Query 003221
Match_columns 838
No_of_seqs 379 out of 2396
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-28 5.1E-33 267.6 39.7 269 52-502 15-300 (355)
2 3ow8_A WD repeat-containing pr 99.9 1.6E-24 5.6E-29 232.8 36.9 288 47-461 23-320 (321)
3 1got_B GT-beta; complex (GTP-b 99.9 7.7E-24 2.6E-28 228.1 36.8 255 52-474 51-313 (340)
4 4gqb_B Methylosome protein 50; 99.9 5.8E-24 2E-28 232.0 33.8 238 58-463 84-332 (344)
5 1vyh_C Platelet-activating fac 99.9 5.6E-24 1.9E-28 236.0 33.9 251 53-473 105-380 (410)
6 4g56_B MGC81050 protein; prote 99.9 9.1E-24 3.1E-28 230.3 29.8 282 53-466 39-347 (357)
7 1vyh_C Platelet-activating fac 99.9 2.9E-23 1E-27 230.2 33.3 259 52-460 146-409 (410)
8 2ynn_A Coatomer subunit beta'; 99.9 6.3E-23 2.1E-27 217.5 34.1 252 52-472 9-269 (304)
9 4h5i_A Guanine nucleotide-exch 99.9 7.1E-23 2.4E-27 224.2 34.3 227 83-462 103-343 (365)
10 2pm7_B Protein transport prote 99.9 1.2E-22 3.9E-27 214.8 33.5 264 52-464 5-287 (297)
11 2pbi_B Guanine nucleotide-bind 99.9 2.4E-22 8.4E-27 218.4 35.7 256 52-473 60-326 (354)
12 1nr0_A Actin interacting prote 99.9 1.2E-22 4.1E-27 236.9 34.3 344 52-472 143-579 (611)
13 3frx_A Guanine nucleotide-bind 99.9 6E-22 2E-26 211.7 35.8 248 52-464 13-269 (319)
14 1got_B GT-beta; complex (GTP-b 99.9 9.4E-22 3.2E-26 211.8 35.5 235 55-459 96-340 (340)
15 3ow8_A WD repeat-containing pr 99.9 1.1E-22 3.8E-27 218.5 28.1 256 98-473 25-290 (321)
16 3frx_A Guanine nucleotide-bind 99.9 9.9E-22 3.4E-26 210.0 34.3 240 52-462 61-317 (319)
17 3iz6_a 40S ribosomal protein R 99.9 9.3E-22 3.2E-26 215.4 33.6 275 52-462 62-375 (380)
18 4gqb_B Methylosome protein 50; 99.9 2.1E-22 7.3E-27 219.6 27.8 250 55-474 29-300 (344)
19 1erj_A Transcriptional repress 99.9 9.5E-22 3.2E-26 216.3 32.7 261 55-473 63-352 (393)
20 2ymu_A WD-40 repeat protein; u 99.9 6.6E-22 2.3E-26 225.0 32.1 302 55-459 261-577 (577)
21 4ery_A WD repeat-containing pr 99.9 2.6E-21 8.9E-26 203.8 34.3 253 52-473 19-279 (312)
22 3k26_A Polycomb protein EED; W 99.9 5.8E-22 2E-26 209.7 28.9 271 55-461 68-365 (366)
23 3mmy_A MRNA export factor; mRN 99.9 1.3E-21 4.3E-26 206.8 30.9 289 52-463 35-347 (368)
24 3fm0_A Protein CIAO1; WDR39,SG 99.9 2.6E-21 8.9E-26 209.1 33.9 258 53-464 12-285 (345)
25 2xzm_R RACK1; ribosome, transl 99.9 4.9E-21 1.7E-25 206.1 35.7 261 52-465 17-288 (343)
26 1nr0_A Actin interacting prote 99.9 1.7E-21 5.7E-26 227.3 33.5 292 55-464 17-357 (611)
27 1erj_A Transcriptional repress 99.9 6E-21 2E-25 209.9 35.3 241 59-462 126-389 (393)
28 2ynn_A Coatomer subunit beta'; 99.9 1.4E-21 4.9E-26 207.1 29.1 217 97-474 5-229 (304)
29 3jrp_A Fusion protein of prote 99.9 2.9E-21 9.9E-26 205.3 31.2 263 52-464 7-289 (379)
30 1r5m_A SIR4-interacting protei 99.9 1.7E-21 5.7E-26 210.0 29.8 290 55-461 107-424 (425)
31 4gga_A P55CDC, cell division c 99.9 1.2E-20 4.1E-25 208.7 37.3 268 75-464 116-397 (420)
32 3zwl_B Eukaryotic translation 99.9 1.4E-20 5E-25 198.7 35.9 259 52-473 28-315 (369)
33 3bg1_A Protein SEC13 homolog; 99.9 5.8E-22 2E-26 211.5 25.0 266 52-463 9-294 (316)
34 1gxr_A ESG1, transducin-like e 99.9 2.2E-20 7.5E-25 195.3 34.7 273 54-460 49-335 (337)
35 3f3f_A Nucleoporin SEH1; struc 99.9 2.2E-20 7.5E-25 194.1 33.6 273 52-465 7-340 (351)
36 2pbi_B Guanine nucleotide-bind 99.9 2.1E-20 7.1E-25 203.3 34.6 223 75-459 118-354 (354)
37 2hes_X YDR267CP; beta-propelle 99.9 1.7E-20 5.9E-25 201.4 31.7 285 52-462 10-328 (330)
38 4aow_A Guanine nucleotide-bind 99.9 1.2E-19 4.1E-24 190.8 36.8 264 52-463 34-338 (340)
39 4ggc_A P55CDC, cell division c 99.9 1.5E-19 5.1E-24 188.2 37.2 266 76-462 37-315 (318)
40 2ymu_A WD-40 repeat protein; u 99.9 1.1E-20 3.7E-25 214.9 31.1 316 55-474 220-550 (577)
41 1sq9_A Antiviral protein SKI8; 99.9 1.8E-20 6.2E-25 202.2 31.1 289 52-462 12-395 (397)
42 4ery_A WD repeat-containing pr 99.9 1.4E-19 4.6E-24 190.7 36.3 240 53-461 62-311 (312)
43 3odt_A Protein DOA1; ubiquitin 99.9 8.8E-20 3E-24 189.1 33.7 273 52-463 14-297 (313)
44 3fm0_A Protein CIAO1; WDR39,SG 99.9 8.3E-20 2.8E-24 197.2 34.5 250 53-464 58-337 (345)
45 4aez_A CDC20, WD repeat-contai 99.9 1E-19 3.6E-24 199.6 35.6 270 75-465 104-383 (401)
46 3vl1_A 26S proteasome regulato 99.9 2.4E-20 8.4E-25 203.1 30.1 251 75-464 109-367 (420)
47 4a11_B DNA excision repair pro 99.9 1.6E-19 5.4E-24 193.9 35.6 266 52-468 39-371 (408)
48 2xzm_R RACK1; ribosome, transl 99.9 7.8E-20 2.7E-24 196.7 32.2 240 53-462 73-340 (343)
49 3ei3_B DNA damage-binding prot 99.9 5.8E-20 2E-24 198.7 30.3 281 52-462 69-382 (383)
50 3iz6_a 40S ribosomal protein R 99.9 7.6E-21 2.6E-25 208.1 22.7 262 86-465 48-332 (380)
51 3dm0_A Maltose-binding peripla 99.9 4.4E-20 1.5E-24 217.8 30.7 282 20-466 344-636 (694)
52 2pm9_A Protein WEB1, protein t 99.9 2.1E-20 7.3E-25 202.5 24.1 253 55-468 66-343 (416)
53 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.7E-19 1.6E-23 196.5 35.1 273 53-463 156-443 (445)
54 1r5m_A SIR4-interacting protei 99.9 7.1E-20 2.4E-24 197.3 27.7 276 75-464 57-363 (425)
55 3i2n_A WD repeat-containing pr 99.9 7.6E-20 2.6E-24 193.2 27.3 267 55-463 64-354 (357)
56 3v7d_B Cell division control p 99.9 6.2E-19 2.1E-23 195.6 35.6 253 53-463 118-382 (464)
57 3dm0_A Maltose-binding peripla 99.9 2.5E-19 8.4E-24 211.4 34.0 240 53-462 427-693 (694)
58 1p22_A F-BOX/WD-repeat protein 99.9 3.9E-19 1.3E-23 197.1 33.2 231 53-463 130-366 (435)
59 3k26_A Polycomb protein EED; W 99.9 7.1E-20 2.4E-24 193.7 25.8 287 53-464 15-320 (366)
60 1k8k_C P40, ARP2/3 complex 41 99.9 2.8E-19 9.5E-24 190.3 30.1 241 55-462 7-274 (372)
61 2pm9_A Protein WEB1, protein t 99.9 9.7E-21 3.3E-25 205.2 18.4 262 54-463 111-415 (416)
62 3gre_A Serine/threonine-protei 99.9 6.7E-20 2.3E-24 201.8 25.4 254 53-473 60-370 (437)
63 3dw8_B Serine/threonine-protei 99.8 1.1E-19 3.8E-24 199.1 26.1 259 55-472 27-382 (447)
64 3sfz_A APAF-1, apoptotic pepti 99.8 2.2E-18 7.4E-23 215.0 39.9 347 53-476 612-1006(1249)
65 3vl1_A 26S proteasome regulato 99.8 1.9E-19 6.5E-24 196.0 26.8 184 173-471 119-332 (420)
66 2j04_B YDR362CP, TAU91; beta p 99.8 1.2E-19 4.1E-24 210.1 25.9 286 77-462 175-517 (524)
67 2ovr_B FBW7, F-BOX/WD repeat p 99.8 2.4E-18 8.1E-23 190.9 34.9 259 76-465 130-394 (445)
68 3dwl_C Actin-related protein 2 99.8 1.7E-20 6E-25 201.6 17.2 226 75-462 23-281 (377)
69 3mkq_A Coatomer beta'-subunit; 99.8 8.4E-19 2.9E-23 207.8 33.0 253 52-473 9-270 (814)
70 3i2n_A WD repeat-containing pr 99.8 5.6E-18 1.9E-22 178.8 35.6 256 53-464 15-293 (357)
71 1pgu_A Actin interacting prote 99.8 5.8E-19 2E-23 200.8 29.6 319 58-473 208-584 (615)
72 1p22_A F-BOX/WD-repeat protein 99.8 5.4E-19 1.8E-23 196.1 28.5 241 53-464 170-416 (435)
73 1yfq_A Cell cycle arrest prote 99.8 6.2E-19 2.1E-23 185.8 27.1 257 52-472 7-292 (342)
74 3v7d_B Cell division control p 99.8 4.6E-18 1.6E-22 188.6 34.2 239 53-464 159-423 (464)
75 3zwl_B Eukaryotic translation 99.8 1.3E-17 4.5E-22 176.0 36.1 244 53-462 71-346 (369)
76 2aq5_A Coronin-1A; WD40 repeat 99.8 3.8E-19 1.3E-23 194.6 24.7 229 77-464 49-301 (402)
77 1pgu_A Actin interacting prote 99.8 1.9E-18 6.3E-23 196.7 31.2 248 53-471 15-292 (615)
78 4g56_B MGC81050 protein; prote 99.8 1.5E-19 5.3E-24 196.9 21.3 240 75-473 17-269 (357)
79 2hes_X YDR267CP; beta-propelle 99.8 3.9E-18 1.3E-22 183.0 31.2 100 345-462 125-230 (330)
80 4e54_B DNA damage-binding prot 99.8 4.5E-19 1.5E-23 197.3 23.7 281 55-463 118-431 (435)
81 3sfz_A APAF-1, apoptotic pepti 99.8 2.4E-19 8.1E-24 223.6 23.6 243 75-473 973-1218(1249)
82 2oaj_A Protein SNI1; WD40 repe 99.8 1.7E-18 5.8E-23 212.4 29.7 98 344-461 505-660 (902)
83 3jro_A Fusion protein of prote 99.8 1.3E-18 4.4E-23 208.6 26.8 263 52-464 5-287 (753)
84 2xyi_A Probable histone-bindin 99.8 4E-18 1.4E-22 189.6 28.8 239 75-462 141-410 (430)
85 3lrv_A PRE-mRNA-splicing facto 99.8 2.4E-18 8.1E-23 184.8 26.0 102 345-464 188-294 (343)
86 2aq5_A Coronin-1A; WD40 repeat 99.8 5.6E-18 1.9E-22 185.3 28.9 250 52-463 77-343 (402)
87 1gxr_A ESG1, transducin-like e 99.8 2.1E-18 7.2E-23 180.2 24.2 232 75-472 21-264 (337)
88 1sq9_A Antiviral protein SKI8; 99.8 2.9E-18 9.8E-23 184.9 26.0 267 97-470 8-330 (397)
89 1l0q_A Surface layer protein; 99.8 4.6E-17 1.6E-21 175.8 35.4 271 75-472 2-285 (391)
90 3gre_A Serine/threonine-protei 99.8 7.3E-18 2.5E-22 185.5 29.5 268 55-459 110-437 (437)
91 1k8k_C P40, ARP2/3 complex 41 99.8 6.2E-18 2.1E-22 179.9 28.0 257 53-462 49-361 (372)
92 2vdu_B TRNA (guanine-N(7)-)-me 99.8 8.2E-18 2.8E-22 187.7 30.2 176 173-460 125-337 (450)
93 4h5i_A Guanine nucleotide-exch 99.8 4E-18 1.4E-22 186.4 26.7 111 349-474 197-313 (365)
94 3ei3_B DNA damage-binding prot 99.8 1.4E-17 4.8E-22 180.0 30.4 222 95-473 63-293 (383)
95 2w18_A PALB2, fancn, partner a 99.8 1.2E-17 4.1E-22 183.8 29.6 187 172-460 156-355 (356)
96 4a11_B DNA excision repair pro 99.8 3.1E-18 1.1E-22 183.8 24.4 226 83-466 22-280 (408)
97 2pm7_B Protein transport prote 99.8 1.2E-17 4.1E-22 176.3 28.3 208 100-463 4-239 (297)
98 3dwl_C Actin-related protein 2 99.8 1.8E-19 6.1E-24 193.8 13.7 200 173-474 33-252 (377)
99 1yfq_A Cell cycle arrest prote 99.8 1.6E-17 5.5E-22 175.0 27.9 236 54-460 54-322 (342)
100 4e54_B DNA damage-binding prot 99.8 1.9E-18 6.6E-23 192.1 20.5 111 345-473 227-338 (435)
101 3jrp_A Fusion protein of prote 99.8 2.6E-17 8.9E-22 174.8 28.1 212 96-463 2-241 (379)
102 4aow_A Guanine nucleotide-bind 99.8 1.8E-16 6.2E-21 166.5 33.6 215 96-471 29-255 (340)
103 3bg1_A Protein SEC13 homolog; 99.8 5.6E-18 1.9E-22 180.7 21.6 208 98-462 6-247 (316)
104 4gq1_A NUP37; propeller, trans 99.8 1.2E-17 4.2E-22 184.0 23.6 256 75-462 101-389 (393)
105 3vu4_A KMHSV2; beta-propeller 99.8 2.4E-17 8.3E-22 179.1 25.3 115 345-464 213-338 (355)
106 3bws_A Protein LP49; two-domai 99.8 6.5E-16 2.2E-20 169.1 36.6 225 75-462 181-432 (433)
107 3mkq_A Coatomer beta'-subunit; 99.8 3.3E-16 1.1E-20 185.6 35.1 244 53-464 52-304 (814)
108 2oaj_A Protein SNI1; WD40 repe 99.8 2.1E-16 7.2E-21 193.8 33.1 247 54-461 15-311 (902)
109 3odt_A Protein DOA1; ubiquitin 99.8 2E-16 6.8E-21 163.8 27.9 210 95-473 8-225 (313)
110 3dw8_B Serine/threonine-protei 99.8 1E-16 3.4E-21 175.6 25.9 110 349-460 306-444 (447)
111 2j04_B YDR362CP, TAU91; beta p 99.8 1E-17 3.4E-22 194.0 18.7 111 345-474 283-398 (524)
112 3f3f_A Nucleoporin SEH1; struc 99.7 2.6E-16 9.1E-21 163.3 25.1 102 345-464 130-251 (351)
113 4aez_A CDC20, WD repeat-contai 99.7 3.8E-16 1.3E-20 171.3 24.7 214 172-463 112-337 (401)
114 2xyi_A Probable histone-bindin 99.7 6.1E-16 2.1E-20 172.0 25.3 101 345-464 250-355 (430)
115 4gga_A P55CDC, cell division c 99.7 1.8E-15 6.3E-20 167.1 28.0 225 172-474 124-365 (420)
116 3mmy_A MRNA export factor; mRN 99.7 1.1E-15 3.6E-20 161.3 24.2 257 95-473 29-315 (368)
117 2vdu_B TRNA (guanine-N(7)-)-me 99.7 9.8E-16 3.3E-20 170.8 24.3 101 346-466 168-275 (450)
118 4ggc_A P55CDC, cell division c 99.7 4.3E-15 1.5E-19 154.4 26.5 224 173-474 45-285 (318)
119 3jro_A Fusion protein of prote 99.7 2E-15 7E-20 180.9 26.0 211 98-464 2-240 (753)
120 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.4E-14 4.9E-19 161.3 31.0 238 75-476 144-400 (415)
121 4gq1_A NUP37; propeller, trans 99.7 1.8E-15 6E-20 166.7 23.1 144 51-233 13-188 (393)
122 3bws_A Protein LP49; two-domai 99.7 1.4E-14 4.7E-19 158.6 29.8 232 74-463 133-391 (433)
123 2w18_A PALB2, fancn, partner a 99.7 2E-15 7E-20 166.1 23.1 54 345-399 301-355 (356)
124 3lrv_A PRE-mRNA-splicing facto 99.7 2.4E-15 8.4E-20 161.3 23.3 168 173-460 149-331 (343)
125 1pby_B Quinohemoprotein amine 99.7 1.1E-13 3.8E-18 144.7 32.5 284 77-469 3-317 (337)
126 1l0q_A Surface layer protein; 99.6 1E-13 3.4E-18 149.6 28.0 212 173-464 12-235 (391)
127 3u4y_A Uncharacterized protein 99.6 1.9E-13 6.4E-18 144.1 27.9 271 75-463 10-305 (331)
128 2j04_A TAU60, YPL007P, hypothe 99.6 2.3E-14 7.9E-19 166.7 22.5 238 74-461 26-296 (588)
129 2j04_A TAU60, YPL007P, hypothe 99.6 6.5E-14 2.2E-18 163.0 24.2 222 75-451 97-350 (588)
130 1nir_A Nitrite reductase; hemo 99.6 9.3E-13 3.2E-17 152.8 31.0 237 75-462 149-402 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.6 6.1E-13 2.1E-17 148.2 27.3 174 173-463 159-345 (415)
132 1ri6_A Putative isomerase YBHE 99.6 1.6E-12 5.4E-17 136.2 28.1 276 76-465 6-311 (343)
133 1nir_A Nitrite reductase; hemo 99.5 2.7E-12 9.1E-17 148.9 30.3 280 75-470 191-522 (543)
134 2ojh_A Uncharacterized protein 99.5 7.2E-13 2.5E-17 134.6 22.4 217 172-464 21-260 (297)
135 3vgz_A Uncharacterized protein 99.5 4.2E-11 1.4E-15 126.4 34.1 174 173-463 111-304 (353)
136 2ecf_A Dipeptidyl peptidase IV 99.5 2E-12 6.8E-17 152.4 23.1 100 346-465 309-416 (741)
137 3hfq_A Uncharacterized protein 99.4 6.5E-11 2.2E-15 126.1 30.7 103 348-466 208-321 (347)
138 1jmx_B Amine dehydrogenase; ox 99.4 5.7E-11 1.9E-15 124.9 28.9 89 353-464 237-327 (349)
139 1xfd_A DIP, dipeptidyl aminope 99.4 3.8E-12 1.3E-16 149.4 21.2 275 75-461 28-341 (723)
140 2z3z_A Dipeptidyl aminopeptida 99.4 5.9E-12 2E-16 147.7 21.9 222 173-465 101-345 (706)
141 3scy_A Hypothetical bacterial 99.4 1.2E-10 3.9E-15 125.1 29.1 105 347-467 231-342 (361)
142 2ojh_A Uncharacterized protein 99.4 3.2E-11 1.1E-15 122.4 21.8 89 348-453 194-293 (297)
143 3u4y_A Uncharacterized protein 99.4 3.2E-10 1.1E-14 119.2 29.7 182 173-465 20-210 (331)
144 3vgz_A Uncharacterized protein 99.4 5.2E-10 1.8E-14 118.0 31.3 220 75-453 101-335 (353)
145 2ecf_A Dipeptidyl peptidase IV 99.3 1.9E-11 6.6E-16 144.0 18.8 250 173-472 64-377 (741)
146 3scy_A Hypothetical bacterial 99.3 1.4E-09 4.7E-14 116.7 30.8 103 347-464 175-293 (361)
147 3hfq_A Uncharacterized protein 99.3 1.1E-09 3.6E-14 116.7 29.6 103 347-462 160-271 (347)
148 2oit_A Nucleoporin 214KDA; NH2 99.3 1.5E-10 5.3E-15 130.1 23.1 102 345-465 168-281 (434)
149 1jof_A Carboxy-CIS,CIS-muconat 99.3 5E-10 1.7E-14 121.5 25.6 78 371-463 255-342 (365)
150 2z3z_A Dipeptidyl aminopeptida 99.3 6.2E-10 2.1E-14 130.6 27.4 96 347-463 331-436 (706)
151 3o4h_A Acylamino-acid-releasin 99.3 2.1E-10 7.3E-15 131.9 22.3 91 349-460 175-274 (582)
152 1k32_A Tricorn protease; prote 99.2 2.9E-10 1E-14 140.8 23.8 103 348-472 357-470 (1045)
153 1k32_A Tricorn protease; prote 99.2 3.1E-10 1.1E-14 140.6 23.4 95 347-461 398-501 (1045)
154 2oit_A Nucleoporin 214KDA; NH2 99.2 7.1E-11 2.4E-15 132.9 15.4 97 345-461 114-222 (434)
155 1xfd_A DIP, dipeptidyl aminope 99.2 2.7E-10 9.1E-15 133.7 20.8 103 347-465 278-396 (723)
156 1z68_A Fibroblast activation p 99.2 4.2E-11 1.4E-15 141.1 13.6 282 75-465 27-347 (719)
157 1jof_A Carboxy-CIS,CIS-muconat 99.2 4.9E-09 1.7E-13 113.7 28.9 104 348-464 166-293 (365)
158 1pby_B Quinohemoprotein amine 99.2 9.8E-10 3.3E-14 114.6 22.4 210 173-462 11-269 (337)
159 1ri6_A Putative isomerase YBHE 99.2 1.5E-09 5.3E-14 113.4 22.4 103 347-465 104-212 (343)
160 3pe7_A Oligogalacturonate lyas 99.1 1.1E-08 3.8E-13 109.9 27.1 98 348-463 263-383 (388)
161 3o4h_A Acylamino-acid-releasin 99.1 5.7E-10 1.9E-14 128.4 16.5 99 350-472 133-236 (582)
162 1q7f_A NHL, brain tumor CG1071 99.1 3.4E-07 1.2E-11 94.7 33.4 95 348-462 184-280 (286)
163 1jmx_B Amine dehydrogenase; ox 99.1 1.3E-08 4.5E-13 106.8 23.0 56 173-228 21-82 (349)
164 4a5s_A Dipeptidyl peptidase 4 99.1 2.3E-09 7.9E-14 127.8 18.9 110 75-223 28-144 (740)
165 1z68_A Fibroblast activation p 99.0 2.4E-09 8.1E-14 126.1 13.5 51 173-223 36-102 (719)
166 2oiz_A Aromatic amine dehydrog 98.9 7.2E-07 2.5E-11 97.4 31.2 95 347-463 219-335 (361)
167 2gop_A Trilobed protease; beta 98.9 3.5E-07 1.2E-11 96.8 24.9 96 348-473 243-340 (347)
168 3pe7_A Oligogalacturonate lyas 98.8 1.5E-07 5.2E-12 101.0 20.8 98 347-463 166-274 (388)
169 3dsm_A Uncharacterized protein 98.8 1.3E-06 4.5E-11 93.8 27.9 231 75-461 54-301 (328)
170 3fvz_A Peptidyl-glycine alpha- 98.8 2.1E-06 7.2E-11 91.8 27.9 99 347-463 216-323 (329)
171 3azo_A Aminopeptidase; POP fam 98.8 4.5E-07 1.5E-11 105.4 23.2 99 349-465 217-326 (662)
172 3c5m_A Oligogalacturonate lyas 98.8 1.6E-07 5.4E-12 100.6 17.7 100 349-469 264-389 (396)
173 4a5s_A Dipeptidyl peptidase 4 98.7 7.6E-08 2.6E-12 114.7 15.9 97 348-465 91-205 (740)
174 3e5z_A Putative gluconolactona 98.7 6.5E-06 2.2E-10 85.8 27.7 90 348-464 192-286 (296)
175 3dsm_A Uncharacterized protein 98.7 2.9E-06 9.8E-11 91.1 24.6 178 173-462 64-253 (328)
176 2dg1_A DRP35, lactonase; beta 98.7 3.7E-05 1.3E-09 81.0 32.2 105 75-222 56-173 (333)
177 3c5m_A Oligogalacturonate lyas 98.6 1.2E-06 4.1E-11 93.7 18.4 97 347-462 166-273 (396)
178 3no2_A Uncharacterized protein 98.6 4.7E-05 1.6E-09 80.3 29.3 231 74-465 4-254 (276)
179 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 5.5E-05 1.9E-09 78.4 28.7 97 348-464 197-301 (314)
180 3azo_A Aminopeptidase; POP fam 98.5 3.7E-06 1.3E-10 97.7 20.7 96 350-465 266-370 (662)
181 1q7f_A NHL, brain tumor CG1071 98.5 2.3E-05 8E-10 80.8 23.6 92 348-460 141-236 (286)
182 1qks_A Cytochrome CD1 nitrite 98.5 0.00018 6.1E-09 84.1 33.5 234 75-462 167-421 (567)
183 2xdw_A Prolyl endopeptidase; a 98.5 5.7E-05 2E-09 89.4 29.8 97 348-463 310-415 (710)
184 1xip_A Nucleoporin NUP159; bet 98.4 9.9E-06 3.4E-10 90.5 20.0 82 346-451 143-233 (388)
185 1qks_A Cytochrome CD1 nitrite 98.4 4.5E-05 1.5E-09 89.1 26.0 179 172-464 176-375 (567)
186 2dg1_A DRP35, lactonase; beta 98.4 0.00021 7.2E-09 75.1 28.7 99 348-460 161-261 (333)
187 1rwi_B Serine/threonine-protei 98.3 4.7E-05 1.6E-09 77.3 22.0 96 348-463 170-265 (270)
188 3no2_A Uncharacterized protein 98.3 3E-05 1E-09 81.8 21.1 171 173-462 15-195 (276)
189 3fvz_A Peptidyl-glycine alpha- 98.3 0.0001 3.5E-09 78.6 25.3 53 347-400 266-321 (329)
190 2mad_H Methylamine dehydrogena 98.3 0.001 3.5E-08 73.2 33.8 99 347-465 232-353 (373)
191 2bkl_A Prolyl endopeptidase; m 98.3 1.8E-05 6E-10 93.6 18.5 98 347-463 293-398 (695)
192 2xdw_A Prolyl endopeptidase; a 98.2 9.2E-05 3.1E-09 87.6 24.3 99 348-462 258-366 (710)
193 3sjl_D Methylamine dehydrogena 98.2 0.00044 1.5E-08 77.2 28.3 100 347-466 245-367 (386)
194 3c75_H MADH, methylamine dehyd 98.1 0.00075 2.6E-08 76.2 28.0 277 75-466 85-406 (426)
195 2gop_A Trilobed protease; beta 98.1 6.7E-05 2.3E-09 79.1 18.1 80 348-453 151-236 (347)
196 2ghs_A AGR_C_1268P; regucalcin 98.1 0.0033 1.1E-07 67.1 31.0 84 349-453 201-293 (326)
197 3e5z_A Putative gluconolactona 98.1 0.0014 4.8E-08 67.9 27.4 92 349-461 153-245 (296)
198 2z2n_A Virginiamycin B lyase; 98.1 0.0077 2.6E-07 61.2 32.3 92 348-460 161-253 (299)
199 1yr2_A Prolyl oligopeptidase; 98.1 0.00039 1.3E-08 82.8 25.9 96 348-462 340-441 (741)
200 2ece_A 462AA long hypothetical 98.1 0.00054 1.9E-08 77.8 25.3 81 371-465 322-428 (462)
201 3hrp_A Uncharacterized protein 98.1 0.0023 7.9E-08 71.1 30.3 73 371-461 324-409 (409)
202 3g4e_A Regucalcin; six bladed 98.1 0.0026 8.8E-08 66.6 28.7 84 349-452 171-262 (297)
203 2oiz_A Aromatic amine dehydrog 98.0 9.3E-06 3.2E-10 88.6 9.5 99 347-464 29-142 (361)
204 1xip_A Nucleoporin NUP159; bet 98.0 7.7E-05 2.6E-09 83.3 16.5 90 347-464 104-193 (388)
205 3g4e_A Regucalcin; six bladed 97.9 0.004 1.4E-07 65.1 25.7 50 173-223 35-85 (297)
206 2z2n_A Virginiamycin B lyase; 97.8 0.04 1.4E-06 55.8 32.2 92 348-462 203-295 (299)
207 1mda_H Methylamine dehydrogena 97.8 0.0011 3.7E-08 73.4 20.5 55 174-229 47-114 (368)
208 2qe8_A Uncharacterized protein 97.8 0.0012 4E-08 71.0 19.7 55 173-227 93-161 (343)
209 1kb0_A Quinohemoprotein alcoho 97.7 0.004 1.4E-07 74.0 24.4 43 420-465 468-510 (677)
210 1yr2_A Prolyl oligopeptidase; 97.7 0.005 1.7E-07 73.3 25.2 98 348-464 293-395 (741)
211 2iwa_A Glutamine cyclotransfer 97.6 0.019 6.6E-07 60.7 25.4 175 173-464 44-239 (266)
212 3iuj_A Prolyl endopeptidase; h 97.5 0.013 4.6E-07 69.2 26.2 94 348-462 304-405 (693)
213 1rwi_B Serine/threonine-protei 97.5 0.0019 6.6E-08 65.3 16.1 94 348-461 128-221 (270)
214 2bkl_A Prolyl endopeptidase; m 97.5 0.003 1E-07 74.5 19.8 96 348-463 201-305 (695)
215 2hz6_A Endoplasmic reticulum t 97.5 6.6E-05 2.3E-09 82.3 4.9 92 346-463 99-193 (369)
216 2qc5_A Streptogramin B lactona 97.5 0.12 4.1E-06 52.3 32.9 92 348-460 166-258 (300)
217 2qc5_A Streptogramin B lactona 97.5 0.11 3.8E-06 52.6 28.5 90 348-460 208-298 (300)
218 2ece_A 462AA long hypothetical 97.4 0.0081 2.8E-07 68.3 21.4 100 346-462 161-289 (462)
219 1pjx_A Dfpase, DIISOPROPYLFLUO 97.4 0.015 5.2E-07 59.9 21.9 100 348-461 152-255 (314)
220 3nol_A Glutamine cyclotransfer 97.4 0.015 5.1E-07 61.5 21.7 171 173-460 65-252 (262)
221 3sjl_D Methylamine dehydrogena 97.4 0.00048 1.7E-08 76.8 10.6 99 348-465 58-172 (386)
222 3hrp_A Uncharacterized protein 97.3 0.028 9.6E-07 62.3 23.2 96 348-461 239-353 (409)
223 2ghs_A AGR_C_1268P; regucalcin 97.2 0.087 3E-06 55.9 25.6 97 349-460 161-258 (326)
224 2mad_H Methylamine dehydrogena 97.2 0.0029 9.8E-08 69.6 14.3 94 350-463 48-157 (373)
225 3mbr_X Glutamine cyclotransfer 97.2 0.06 2.1E-06 56.3 23.2 57 173-229 43-103 (243)
226 3dr2_A Exported gluconolactona 97.2 0.075 2.6E-06 55.5 23.9 84 349-456 215-301 (305)
227 3nok_A Glutaminyl cyclase; bet 97.1 0.02 7E-07 60.7 18.9 56 173-229 75-134 (268)
228 3q7m_A Lipoprotein YFGL, BAMB; 97.1 0.43 1.5E-05 50.9 29.4 92 347-463 247-338 (376)
229 1mda_H Methylamine dehydrogena 97.0 0.00092 3.1E-08 74.0 8.1 94 350-462 47-158 (368)
230 2qe8_A Uncharacterized protein 97.0 0.051 1.7E-06 58.1 20.9 80 371-460 196-276 (343)
231 1yiq_A Quinohemoprotein alcoho 97.0 0.18 6.2E-06 59.9 27.3 43 420-465 466-508 (689)
232 3hxj_A Pyrrolo-quinoline quino 96.9 0.051 1.7E-06 56.3 20.0 92 348-463 234-325 (330)
233 1fwx_A Nitrous oxide reductase 96.9 0.043 1.5E-06 64.2 20.8 105 349-462 254-361 (595)
234 3c75_H MADH, methylamine dehyd 96.9 0.0025 8.4E-08 72.0 9.7 98 349-465 99-212 (426)
235 3q7m_A Lipoprotein YFGL, BAMB; 96.8 0.68 2.3E-05 49.3 29.9 57 173-229 113-171 (376)
236 3nol_A Glutamine cyclotransfer 96.7 0.22 7.4E-06 52.6 22.7 57 173-229 107-164 (262)
237 2iwa_A Glutamine cyclotransfer 96.7 0.22 7.5E-06 52.6 22.3 96 347-464 84-183 (266)
238 1kb0_A Quinohemoprotein alcoho 96.6 0.055 1.9E-06 64.2 19.3 57 173-229 87-156 (677)
239 2ad6_A Methanol dehydrogenase 96.5 0.51 1.7E-05 54.8 25.7 26 439-464 471-496 (571)
240 1yiq_A Quinohemoprotein alcoho 96.4 0.12 4.3E-06 61.3 20.8 57 173-229 80-149 (689)
241 3nok_A Glutaminyl cyclase; bet 96.2 0.84 2.9E-05 48.3 23.4 57 173-229 116-173 (268)
242 1kv9_A Type II quinohemoprotei 96.2 0.25 8.5E-06 58.5 21.2 57 173-229 76-145 (668)
243 2hz6_A Endoplasmic reticulum t 95.9 0.002 7E-08 70.4 1.8 93 346-463 56-150 (369)
244 3amr_A 3-phytase; beta-propell 95.9 0.76 2.6E-05 50.6 21.7 100 348-461 152-262 (355)
245 3iuj_A Prolyl endopeptidase; h 95.8 0.034 1.2E-06 65.7 11.7 103 345-464 151-270 (693)
246 1kv9_A Type II quinohemoprotei 95.4 2.6 8.9E-05 49.7 25.8 30 435-464 461-490 (668)
247 1fwx_A Nitrous oxide reductase 95.2 0.36 1.2E-05 56.6 17.1 98 345-451 295-407 (595)
248 1ijq_A LDL receptor, low-densi 95.0 4.3 0.00015 42.8 25.9 95 348-461 98-194 (316)
249 3mbr_X Glutamine cyclotransfer 94.8 4.5 0.00015 42.1 27.2 57 173-229 85-142 (243)
250 2ad6_A Methanol dehydrogenase 94.8 2 6.8E-05 49.8 21.8 58 173-230 125-195 (571)
251 1npe_A Nidogen, entactin; glyc 94.7 4.2 0.00014 41.0 32.0 72 370-463 167-239 (267)
252 3dr2_A Exported gluconolactona 94.3 0.24 8.2E-06 51.6 11.7 84 346-448 64-147 (305)
253 1flg_A Protein (quinoprotein e 93.8 1.7 5.8E-05 50.5 18.6 82 347-450 464-548 (582)
254 1w6s_A Methanol dehydrogenase 93.7 3 0.0001 48.9 20.5 59 172-230 181-297 (599)
255 2fp8_A Strictosidine synthase; 92.9 10 0.00034 39.4 25.2 73 372-463 231-314 (322)
256 3hxj_A Pyrrolo-quinoline quino 92.9 2.2 7.4E-05 43.8 15.8 87 349-459 195-281 (330)
257 1flg_A Protein (quinoprotein e 91.9 14 0.00049 42.7 22.8 56 174-229 79-145 (582)
258 3v65_B Low-density lipoprotein 91.6 17 0.00058 39.5 21.7 92 350-461 182-276 (386)
259 1k3i_A Galactose oxidase precu 91.3 6.2 0.00021 46.0 19.0 50 173-222 265-325 (656)
260 3p5b_L Low density lipoprotein 91.2 20 0.00067 39.2 24.6 94 348-461 180-276 (400)
261 1bpo_A Protein (clathrin); cla 91.2 24 0.00082 40.1 26.4 196 173-464 86-291 (494)
262 3v64_C Agrin; beta propeller, 90.6 20 0.0007 38.2 22.3 93 349-461 138-233 (349)
263 2p4o_A Hypothetical protein; p 90.3 14 0.00047 38.3 18.7 69 373-460 172-240 (306)
264 1npe_A Nidogen, entactin; glyc 89.8 5.6 0.00019 40.1 14.8 95 348-461 57-154 (267)
265 2xzh_A Clathrin heavy chain 1; 89.3 28 0.00097 38.1 29.3 48 173-220 87-135 (365)
266 2xe4_A Oligopeptidase B; hydro 89.3 1 3.6E-05 53.7 10.2 97 347-462 199-304 (751)
267 1w6s_A Methanol dehydrogenase 88.3 29 0.00099 40.4 21.3 57 173-229 73-149 (599)
268 3m0c_C LDL receptor, low-densi 87.8 55 0.0019 39.5 24.1 95 348-461 492-588 (791)
269 3ei3_A DNA damage-binding prot 87.2 25 0.00087 44.3 21.1 95 349-462 904-999 (1158)
270 2xzh_A Clathrin heavy chain 1; 86.6 19 0.00065 39.5 16.8 185 349-586 87-290 (365)
271 4a2l_A BT_4663, two-component 86.3 59 0.002 38.4 33.9 94 347-461 375-479 (795)
272 3tc9_A Hypothetical hydrolase; 85.8 18 0.0006 40.1 16.9 72 372-462 228-301 (430)
273 2p4o_A Hypothetical protein; p 85.8 5 0.00017 41.7 11.8 79 359-460 22-100 (306)
274 4a2l_A BT_4663, two-component 85.7 64 0.0022 38.1 30.0 90 349-462 427-526 (795)
275 1bpo_A Protein (clathrin); cla 85.4 21 0.00072 40.6 16.9 185 349-586 86-289 (494)
276 3pbp_A Nucleoporin NUP82; beta 85.1 6.7 0.00023 44.3 12.8 108 348-462 40-158 (452)
277 3v65_B Low-density lipoprotein 84.6 48 0.0016 35.8 27.6 92 349-460 225-316 (386)
278 3sov_A LRP-6, low-density lipo 83.6 48 0.0016 35.0 21.7 93 349-461 101-196 (318)
279 4hw6_A Hypothetical protein, I 83.0 62 0.0021 35.8 22.1 99 348-459 249-371 (433)
280 1xi4_A Clathrin heavy chain; a 82.9 22 0.00074 45.9 17.2 48 173-220 86-134 (1630)
281 3amr_A 3-phytase; beta-propell 82.7 60 0.0021 35.5 23.6 30 371-400 230-262 (355)
282 2xe4_A Oligopeptidase B; hydro 81.7 1.6 5.3E-05 52.2 6.4 74 367-461 170-255 (751)
283 3ei3_A DNA damage-binding prot 81.7 1.2E+02 0.0041 38.2 36.0 91 350-462 493-591 (1158)
284 2fp8_A Strictosidine synthase; 81.6 13 0.00045 38.5 12.9 86 347-451 163-248 (322)
285 3tc9_A Hypothetical hydrolase; 81.3 60 0.0021 35.7 18.8 53 348-400 247-300 (430)
286 2p9w_A MAL S 1 allergenic prot 79.7 8.6 0.00029 41.8 10.8 99 347-461 98-214 (334)
287 3sre_A PON1, serum paraoxonase 79.2 6.7 0.00023 42.9 9.9 97 348-464 138-254 (355)
288 1n7d_A LDL receptor, low-densi 77.3 4.6 0.00016 48.0 8.5 94 348-461 474-570 (699)
289 4hw6_A Hypothetical protein, I 74.3 68 0.0023 35.4 16.6 73 372-463 230-305 (433)
290 1k3i_A Galactose oxidase precu 73.5 11 0.00038 43.9 10.3 95 350-462 220-323 (656)
291 3kya_A Putative phosphatase; s 72.4 1.1E+02 0.0038 34.9 17.9 29 371-399 311-339 (496)
292 3s94_A LRP-6, low-density lipo 71.5 1.6E+02 0.0053 34.3 20.4 183 131-461 10-201 (619)
293 1ijq_A LDL receptor, low-densi 70.9 1E+02 0.0035 32.0 31.5 75 370-462 164-238 (316)
294 3qqz_A Putative uncharacterize 70.4 34 0.0012 35.5 12.1 82 364-465 21-103 (255)
295 3zwu_A Alkaline phosphatase PH 69.4 12 0.00041 43.8 9.2 61 373-449 479-548 (592)
296 3das_A Putative oxidoreductase 68.6 1.3E+02 0.0046 32.4 16.9 31 193-223 32-65 (347)
297 3v64_C Agrin; beta propeller, 67.5 1.3E+02 0.0045 31.8 29.6 91 349-459 182-272 (349)
298 3qqz_A Putative uncharacterize 67.1 1.2E+02 0.0041 31.3 28.8 73 370-459 173-250 (255)
299 3pbp_A Nucleoporin NUP82; beta 63.8 1.9E+02 0.0067 32.5 20.3 77 368-463 123-211 (452)
300 3sov_A LRP-6, low-density lipo 60.8 1.7E+02 0.0057 30.7 31.6 72 371-462 167-238 (318)
301 4a9v_A PHOX; hydrolase, beta-p 59.2 21 0.00071 41.7 8.5 61 372-449 478-548 (592)
302 3v9f_A Two-component system se 59.0 2.7E+02 0.0092 32.6 29.0 92 349-461 469-567 (781)
303 3p5b_L Low density lipoprotein 58.9 2E+02 0.0068 31.1 32.5 93 350-461 226-319 (400)
304 3v9f_A Two-component system se 58.4 2.7E+02 0.0094 32.5 38.5 91 348-461 382-477 (781)
305 4a0p_A LRP6, LRP-6, low-densit 57.3 2.8E+02 0.0095 32.2 23.5 182 130-461 6-196 (628)
306 2p9w_A MAL S 1 allergenic prot 52.4 98 0.0033 33.5 12.0 105 347-465 33-169 (334)
307 1xi4_A Clathrin heavy chain; a 51.4 77 0.0026 41.1 12.3 106 349-473 86-198 (1630)
308 3sre_A PON1, serum paraoxonase 49.6 73 0.0025 34.6 10.6 51 348-401 202-252 (355)
309 3q6k_A 43.2 kDa salivary prote 48.5 2E+02 0.0068 31.6 13.9 109 349-462 123-253 (381)
310 1tfi_A Transcriptional elongat 48.2 8.4 0.00029 30.3 2.0 32 794-829 15-49 (50)
311 1cru_A Protein (soluble quinop 47.2 87 0.003 34.9 11.1 64 371-450 28-98 (454)
312 3m0c_C LDL receptor, low-densi 45.5 4.7E+02 0.016 31.4 33.3 52 349-400 537-588 (791)
313 3a9g_A Putative uncharacterize 42.6 1E+02 0.0036 32.8 10.4 93 347-451 47-154 (354)
314 2ism_A Putative oxidoreductase 41.2 1E+02 0.0036 32.7 10.1 89 347-451 49-154 (352)
315 2ism_A Putative oxidoreductase 40.5 1.1E+02 0.0038 32.4 10.2 70 371-461 32-113 (352)
316 1qyp_A RNA polymerase II; tran 39.9 14 0.00048 29.4 2.2 22 804-829 33-55 (57)
317 2xbg_A YCF48-like protein; pho 39.4 2.1E+02 0.0072 29.7 12.0 72 367-459 160-231 (327)
318 2xbg_A YCF48-like protein; pho 39.1 66 0.0022 33.7 8.0 91 348-459 224-319 (327)
319 1cru_A Protein (soluble quinop 35.7 1.4E+02 0.0049 33.1 10.4 84 370-462 144-259 (454)
320 3das_A Putative oxidoreductase 33.9 2.2E+02 0.0074 30.7 11.2 29 370-399 32-60 (347)
321 3kya_A Putative phosphatase; s 31.8 1.3E+02 0.0043 34.4 9.2 65 371-453 140-214 (496)
322 3s25_A Hypothetical 7-bladed b 31.4 4.6E+02 0.016 27.2 17.4 67 376-465 190-256 (302)
323 3a9g_A Putative uncharacterize 30.8 1.7E+02 0.0056 31.2 9.6 59 371-450 30-94 (354)
324 1n7d_A LDL receptor, low-densi 28.4 1.1E+02 0.0038 36.1 8.3 52 349-400 519-570 (699)
325 1tl2_A L10, protein (tachylect 27.2 1.3E+02 0.0044 31.0 7.4 65 373-454 91-155 (236)
326 1twf_I B12.6, DNA-directed RNA 26.4 22 0.00076 32.9 1.4 35 794-832 78-115 (122)
327 2wg3_C Hedgehog-interacting pr 26.1 5.8E+02 0.02 28.3 13.4 101 346-453 33-160 (463)
328 1tl2_A L10, protein (tachylect 24.9 93 0.0032 32.1 5.8 73 371-462 42-114 (236)
329 3q6k_A 43.2 kDa salivary prote 21.7 1.9E+02 0.0066 31.7 8.0 56 172-227 122-197 (381)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.5e-28 Score=267.57 Aligned_cols=269 Identities=19% Similarity=0.195 Sum_probs=201.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
...+++.|..+.|+. | +++|++|.++|++|||+++ ...+...+.+.+..+++++. . .
T Consensus 15 ~~~h~~~V~~v~fs~----d---g~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~-----------~--~ 71 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ----D---QSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHR-----------T--N 71 (355)
T ss_dssp ----CCCCCEEEECT----T---SSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTT-----------S--S
T ss_pred cccCCCceEEEEECC----C---CCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCC-----------C--C
Confidence 356788999999976 4 5799999999999999864 33444445456888888853 2 2
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEeCC
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLAT 211 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l~~ 211 (838)
++++++++ +++|+|||+++++.+..+.+++.|.+++++++.++++.++
T Consensus 72 ~~~~~~~~--------------------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 119 (355)
T 3vu4_A 72 YVAFVTGV--------------------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD 119 (355)
T ss_dssp EEEEECSS--------------------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEEECC--------------------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcC
Confidence 66654321 2689999999999999999999999999999999999999
Q ss_pred eEEEEECCCC-ceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCC
Q 003221 212 QIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (838)
Q Consensus 212 ~I~IwD~~t~-e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~ 290 (838)
.|++||+.++ +.++++.+ + .+.+++++.+||+++
T Consensus 120 ~i~i~d~~~~~~~~~~~~~---~-------------~~~~~~s~~~la~~s----------------------------- 154 (355)
T 3vu4_A 120 VISVFKFGNPWKRITDDIR---F-------------GGVCEFSNGLLVYSN----------------------------- 154 (355)
T ss_dssp EEEEEESSTTCCBSSCCEE---E-------------EEEEEEETTEEEEEE-----------------------------
T ss_pred EEEEEECCCCceeeEEecc---C-------------CceEEEEccEEEEeC-----------------------------
Confidence 9999999988 66655444 2 234555444444431
Q ss_pred CcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc----------
Q 003221 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---------- 360 (838)
Q Consensus 291 gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~---------- 360 (838)
+..+|.|+|||+.+++
T Consensus 155 ------------------------------------------------------g~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 155 ------------------------------------------------------EFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp ------------------------------------------------------SSCTTCEEEEECCC------------
T ss_pred ------------------------------------------------------CCcCcEEEEEECCCCCcccccccccc
Confidence 2346889999998765
Q ss_pred ------EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 003221 361 ------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 434 (838)
Q Consensus 361 ------~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I 434 (838)
.+..+.+|..+|.+|+|+|+|++||||+.||+.|+|||+.. | ..+.++.+|.+...|
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-------~----------~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-------G----------VLVREFRRGLDRADV 243 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-------C----------CEEEEEECTTCCSCE
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-------C----------cEEEEEEcCCCCCcE
Confidence 26789999999999999999999999999876699999964 3 578888877566789
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCCCCCcccCccCCCcccCCCCccccccc
Q 003221 435 QDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV 502 (838)
Q Consensus 435 ~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p~~~lp~~~~s~~~~~q~~~ 502 (838)
.+++|+||+++|++++.|++|+||++........ | .+... .+|.++.+.|+++++.+
T Consensus 244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~---~-------~~~~~-~~~~~~~~~~~~~~~~~ 300 (355)
T 3vu4_A 244 VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR---H-------ALKGW-INMKYFQSEWSLCNFKL 300 (355)
T ss_dssp EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCS---E-------ETTTT-EECCCCCCSSCSEEEEC
T ss_pred EEEEECCCCCEEEEEECCCEEEEEEccCCCCccc---c-------cccce-eeccccccccceeEEEe
Confidence 9999999999999999999999999976432110 0 11111 25667777777666444
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.6e-24 Score=232.76 Aligned_cols=288 Identities=11% Similarity=0.137 Sum_probs=203.4
Q ss_pred ecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC-ceeEEeeeccCcEEEEEEecCCCCCCCCC
Q 003221 47 SISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (838)
Q Consensus 47 ~i~~~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g-~v~ells~hdg~V~~l~~lP~p~~~~~~d 124 (838)
.+......|++.|.-+.|.... ...+.+|++|..+ .++|||+.... .+...+.+|.+.|.++.+.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~---~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-------- 91 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNK---KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-------- 91 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS--------
T ss_pred heeeecccCCCcEEEEEEecCC---CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC--------
Confidence 3333456799999999996521 1124566666655 59999996422 123357789999999999864
Q ss_pred CcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC
Q 003221 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR 203 (838)
Q Consensus 125 ~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~ 203 (838)
.++++..+. +++|++||+++++.+..+.. ...|.+++++++
T Consensus 92 -----~~~l~s~s~---------------------------------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd 133 (321)
T 3ow8_A 92 -----LPIAASSSL---------------------------------DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 133 (321)
T ss_dssp -----SSEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCTTCCCCEEECTT
T ss_pred -----CCEEEEEeC---------------------------------CCcEEEEECCCCCEEEEEeCCCccEEEEEECCC
Confidence 246654221 37899999999999999875 457889999885
Q ss_pred --eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCC--CceeecCCCCCCcc
Q 003221 204 --IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQN 276 (838)
Q Consensus 204 --iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~--~~~l~~~G~vs~q~ 276 (838)
+|+++. ++.|++||+.+++...++..+... ...++++| ++||.++. .+.+|+...
T Consensus 134 g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~-------------v~~~~~spdg~~lasg~~dg~i~iwd~~~----- 195 (321)
T 3ow8_A 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF-------------ILSIAYSPDGKYLASGAIDGIINIFDIAT----- 195 (321)
T ss_dssp SSEEEEECTTSEEEEEETTTCSEEEEEECSSSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTT-----
T ss_pred CCEEEEEcCCCcEEEEEcCCCceeEEecCCCce-------------EEEEEECCCCCEEEEEcCCCeEEEEECCC-----
Confidence 777765 568999999999988887765432 34577776 77876643 456777411
Q ss_pred cCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEEC
Q 003221 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (838)
Q Consensus 277 l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl 356 (838)
+..+ +++.++ ......+.+++..+.+. ++..+|.|+|||+
T Consensus 196 --------------~~~~----------------~~~~~h------~~~v~~l~~spd~~~l~----s~s~dg~i~iwd~ 235 (321)
T 3ow8_A 196 --------------GKLL----------------HTLEGH------AMPIRSLTFSPDSQLLV----TASDDGYIKIYDV 235 (321)
T ss_dssp --------------TEEE----------------EEECCC------SSCCCEEEECTTSCEEE----EECTTSCEEEEET
T ss_pred --------------CcEE----------------EEEccc------CCceeEEEEcCCCCEEE----EEcCCCeEEEEEC
Confidence 0000 011110 00111222233333332 4678999999999
Q ss_pred CCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003221 357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (838)
Q Consensus 357 ~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~s 436 (838)
.+++.+..+.+|..+|.+++|+|+|++|||++.||+ |+|||+.. + .++.++. + +...|++
T Consensus 236 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~-------~----------~~~~~~~-~-h~~~v~~ 295 (321)
T 3ow8_A 236 QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGT-------R----------TCVHTFF-D-HQDQVWG 295 (321)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEE
T ss_pred CCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCC-------C----------EEEEEEc-C-CCCcEEE
Confidence 999999999999999999999999999999999876 99999954 2 4666664 4 3457999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEecC
Q 003221 437 ICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 437 IaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
++|+||+++|++++.||+|+||++.
T Consensus 296 v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 296 VKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999963
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.94 E-value=7.7e-24 Score=228.09 Aligned_cols=255 Identities=16% Similarity=0.139 Sum_probs=190.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..+|++.|.-+.|.. + ++.|++|..+| ++|||+.. ++....+..|.+.|.++++.|+.
T Consensus 51 l~gH~~~v~~~~~s~----d---~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~------------- 109 (340)
T 1got_B 51 LRGHLAKIYAMHWGT----D---SRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSG------------- 109 (340)
T ss_dssp ECCCSSCEEEEEECT----T---SSEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTS-------------
T ss_pred ecCCCCceEEEEECC----C---CCEEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCC-------------
Confidence 467889999999865 3 45677776665 99999954 66667778899999999999752
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe----EEEEEe-CCCcEEEEEeCCC--
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC----YEHVLR-FRSSVCMVRCSPR-- 203 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~----~V~tL~-f~s~V~sV~~s~~-- 203 (838)
.+|+..+. +++|++||+.+++ ....+. +...|.++.++++
T Consensus 110 ~~l~s~~~---------------------------------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (340)
T 1got_B 110 NYVACGGL---------------------------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156 (340)
T ss_dssp SEEEEEET---------------------------------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc
Confidence 35654221 3789999998763 445554 4568999998654
Q ss_pred eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCC
Q 003221 204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (838)
Q Consensus 204 iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s 283 (838)
+++.+.++.|++||+.+++.+.++..|..+ ... |++.++.
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~-------~~~~~~~-------------------- 196 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-------------VMS-------LSLAPDT-------------------- 196 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEE-------EEECTTS--------------------
T ss_pred EEEEECCCcEEEEECCCCcEEEEEcCCCCc-------------eEE-------EEECCCC--------------------
Confidence 455566778999999999888777655442 112 2332211
Q ss_pred CCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEE
Q 003221 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (838)
Q Consensus 284 ~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~ 363 (838)
.+++ ++..||.|+|||+.+++.+.
T Consensus 197 --------~~l~------------------------------------------------sg~~d~~v~~wd~~~~~~~~ 220 (340)
T 1got_B 197 --------RLFV------------------------------------------------SGACDASAKLWDVREGMCRQ 220 (340)
T ss_dssp --------SEEE------------------------------------------------EEETTSCEEEEETTTCSEEE
T ss_pred --------CEEE------------------------------------------------EEeCCCcEEEEECCCCeeEE
Confidence 0000 24568999999999999999
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 364 ~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
.+.+|..+|.+++|+|+|.+|||++.||+ |+|||+.. + ..+..+........|.+++|+|||
T Consensus 221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~-------~----------~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 221 TFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRA-------D----------QELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCC-------C----------cEEEEEccCCcccceEEEEECCCC
Confidence 99999999999999999999999999886 99999964 2 345554322223469999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCccccccCCC
Q 003221 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
++|++++.||+|+||++........+.+|..
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~ 313 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313 (340)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred CEEEEECCCCeEEEEEcccCcEeeEeecCCC
Confidence 9999999999999999987665566677753
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.93 E-value=5.8e-24 Score=231.98 Aligned_cols=238 Identities=13% Similarity=0.157 Sum_probs=168.4
Q ss_pred cEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeE----EeeeccCcEEEEEEecCCCCCCCCCCcccCCcEE
Q 003221 58 QVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNE----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (838)
Q Consensus 58 ~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~e----lls~hdg~V~~l~~lP~p~~~~~~d~F~~srpLL 133 (838)
.|.-+.|.. + +++++.+.++.++|||++. ++... .+..|+++|.+|+|.|+. .+|
T Consensus 84 ~v~~~~~s~----d---~~l~~~s~dg~v~lWd~~~-~~~~~~~~~~~~~H~~~V~~v~~spdg-------------~~l 142 (344)
T 4gqb_B 84 GVADLTWVG----E---RGILVASDSGAVELWELDE-NETLIVSKFCKYEHDDIVSTVSVLSSG-------------TQA 142 (344)
T ss_dssp CEEEEEEET----T---TEEEEEETTSEEEEEEECT-TSSCEEEEEEEECCSSCEEEEEECTTS-------------SEE
T ss_pred CEEEEEEeC----C---CeEEEEECCCEEEEEeccC-CCceeEeeccccCCCCCEEEEEECCCC-------------CEE
Confidence 455566643 2 4555554445599999965 43322 234789999999999853 356
Q ss_pred EEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC---eEEEE-
Q 003221 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR---IVAVG- 208 (838)
Q Consensus 134 avV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~---iLaV~- 208 (838)
+..+. +++|++||+++++.+.++. +...|.+++|+++ +|+++
T Consensus 143 ~sgs~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s 189 (344)
T 4gqb_B 143 VSGSK---------------------------------DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189 (344)
T ss_dssp EEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred EEEeC---------------------------------CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeec
Confidence 54321 2689999999999999997 4579999999864 56654
Q ss_pred eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCC
Q 003221 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (838)
Q Consensus 209 l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsp 288 (838)
.++.|++||+.+++...++...... ... ..+++.+.
T Consensus 190 ~D~~v~iwd~~~~~~~~~~~~~~~~-------------~~~-----~~~~~~p~-------------------------- 225 (344)
T 4gqb_B 190 EDNRILLWDTRCPKPASQIGCSAPG-------------YLP-----TSLAWHPQ-------------------------- 225 (344)
T ss_dssp TTSCEEEEETTSSSCEEECC----C-------------CCE-----EEEEECSS--------------------------
T ss_pred cccccccccccccceeeeeecceee-------------ccc-----eeeeecCC--------------------------
Confidence 4678999999999877665432110 001 12233221
Q ss_pred CCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC
Q 003221 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (838)
Q Consensus 289 s~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH 368 (838)
++.+++ .+..+|+|+|||+.+++.+..+.+|
T Consensus 226 -~~~~l~------------------------------------------------sg~~dg~v~~wd~~~~~~~~~~~~h 256 (344)
T 4gqb_B 226 -QSEVFV------------------------------------------------FGDENGTVSLVDTKSTSCVLSSAVH 256 (344)
T ss_dssp -CTTEEE------------------------------------------------EEETTSEEEEEESCC--CCEEEECC
T ss_pred -CCcceE------------------------------------------------EeccCCcEEEEECCCCcEEEEEcCC
Confidence 011110 2456899999999999999999999
Q ss_pred CCCeEEEEECCCC-CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EE
Q 003221 369 TSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WI 446 (838)
Q Consensus 369 ~spIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~L 446 (838)
..+|.+|+|+|+| ++|||||.||+ |+|||+.. + .+.++ +|+ ...|++|+||||++ .|
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~-------~-----------~~~~~-~~H-~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSL-------S-----------ELFRS-QAH-RDFVRDATWSPLNHSLL 315 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSC-EEEECTTC-------C-----------EEEEE-CCC-SSCEEEEEECSSSTTEE
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCC-------C-----------cEEEE-cCC-CCCEEEEEEeCCCCeEE
Confidence 9999999999998 58999999876 99999853 2 45555 454 45799999999987 56
Q ss_pred EEEeCCCeEEEEecCCC
Q 003221 447 AIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 447 as~S~dGTVhIw~l~~~ 463 (838)
+++|.||+|++|++...
T Consensus 316 as~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 316 TTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEETTSCEEEEECCC-
T ss_pred EEEcCCCeEEEEECCCC
Confidence 78999999999999753
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.93 E-value=5.6e-24 Score=235.96 Aligned_cols=251 Identities=15% Similarity=0.193 Sum_probs=192.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
.+|++.|.-+.|.. + +.+|++|..+| ++|||++ .+++...+..|.++|.++++.|+. .
T Consensus 105 ~gh~~~V~~~~~~p----~---~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~~-------------~ 163 (410)
T 1vyh_C 105 SGHRSPVTRVIFHP----V---FSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSG-------------K 163 (410)
T ss_dssp ECCSSCEEEEEECS----S---SSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTTS-------------S
T ss_pred cccCCcEEEEEEcC----C---CCEEEEEeCCCeEEEEECC-CCcEEEEEeccCCcEEEEEEcCCC-------------C
Confidence 35677888888865 2 35677776665 9999995 577778889999999999998752 3
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eEEEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVAVG 208 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iLaV~ 208 (838)
+|+..+. +++|++||+.+++++.++.. ...|.+++++++ +|+++
T Consensus 164 ~l~sgs~---------------------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~ 210 (410)
T 1vyh_C 164 LLASCSA---------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 210 (410)
T ss_dssp EEEEEET---------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEEeC---------------------------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 6655332 26899999999999888864 568999999875 56554
Q ss_pred -eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 209 -LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 209 -l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
.++.|++||+.+++++.++..|... . +.+++.++.
T Consensus 211 s~D~~i~~wd~~~~~~~~~~~~h~~~-------------v-------~~~~~~~~g------------------------ 246 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGYCVKTFTGHREW-------------V-------RMVRPNQDG------------------------ 246 (410)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSC-------------E-------EEEEECTTS------------------------
T ss_pred eCCCeEEEEECCCCcEEEEEeCCCcc-------------E-------EEEEECCCC------------------------
Confidence 4678999999999988887765442 1 112332210
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
.+++ ++..||+|+|||+.+++....+.+
T Consensus 247 ----~~l~------------------------------------------------s~s~D~~v~vwd~~~~~~~~~~~~ 274 (410)
T 1vyh_C 247 ----TLIA------------------------------------------------SCSNDQTVRVWVVATKECKAELRE 274 (410)
T ss_dssp ----SEEE------------------------------------------------EEETTSCEEEEETTTCCEEEEECC
T ss_pred ----CEEE------------------------------------------------EEcCCCeEEEEECCCCceeeEecC
Confidence 1110 245689999999999999999999
Q ss_pred CCCCeEEEEECCC--------------------CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 368 HTSPISALCFDPS--------------------GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 368 H~spIsaLaFSPd--------------------GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
|..+|.+++|+|+ |.+|+|++.||+ |+|||+.. | ..+..+.
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~-------~----------~~~~~~~- 335 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVST-------G----------MCLMTLV- 335 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTT-------T----------EEEEEEE-
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCC-------C----------ceEEEEE-
Confidence 9999999999997 779999999775 99999964 3 4666664
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
|+ ...|.+++|+||+++|++++.||+|+||++........+..|.
T Consensus 336 ~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~ 380 (410)
T 1vyh_C 336 GH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380 (410)
T ss_dssp CC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred CC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence 43 4579999999999999999999999999998766666667775
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.93 E-value=9.1e-24 Score=230.27 Aligned_cols=282 Identities=12% Similarity=0.065 Sum_probs=181.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec------C-cEEEEEccCCCc---eeEEeeeccCcEEEEEEecCCCCCCC
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ------N-GFQVLDVEDASN---FNELVSKRDGPVSFLQMQPFPVKDDG 122 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~------~-G~qVWdv~~~g~---v~ells~hdg~V~~l~~lP~p~~~~~ 122 (838)
..+...|.-+.|.. | +++|++|.. + .+++|+...... .......|++.|.+|+|.|+.
T Consensus 39 ~~H~~~V~~v~fSp----D---G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~----- 106 (357)
T 4g56_B 39 ACMEVQIGAVRYRR----D---GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK----- 106 (357)
T ss_dssp -CCCSEEEEEEECS----S---SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-----
T ss_pred ccccCCEEEEEECC----C---CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-----
Confidence 34788899999965 4 678888875 3 378888743221 122234577889999999852
Q ss_pred CCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE-----eCCCcEEE
Q 003221 123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-----RFRSSVCM 197 (838)
Q Consensus 123 ~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL-----~f~s~V~s 197 (838)
.+| +.+. .++|+|||+.+++.+... .+...|.+
T Consensus 107 --------~~l-~~s~---------------------------------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 107 --------GIL-VASD---------------------------------SGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp --------EEE-EEET---------------------------------TSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred --------CEE-EEEC---------------------------------CCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 233 3222 267999999998765433 24568999
Q ss_pred EEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc---cEEEEeC--CCceeecC
Q 003221 198 VRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYAS--NTLLLSNS 269 (838)
Q Consensus 198 V~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp---r~LAys~--~~~~l~~~ 269 (838)
|+++++ +|+++. ++.|++||+.+++.+..+..|..+ ...+++++ ..++..+ ..+.+|+.
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-------------v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-------------VNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEccCCCceeeeeccCCceEEEEC
Confidence 999885 666655 568999999999988888766553 34566654 3444433 35677874
Q ss_pred CCCCC-cccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCc-cccccccccccCC
Q 003221 270 GRLSP-QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSV-WKVGRHAGADMDN 347 (838)
Q Consensus 270 G~vs~-q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~-~k~~~~~~~~g~~ 347 (838)
..-.+ ..+... . .......+.+++. ...++ .+..
T Consensus 212 ~~~~~~~~~~~~--------~--------------------------------~~~~v~~v~~sp~~~~~la----~g~~ 247 (357)
T 4g56_B 212 RKPKPATRIDFC--------A--------------------------------SDTIPTSVTWHPEKDDTFA----CGDE 247 (357)
T ss_dssp TSSSCBCBCCCT--------T--------------------------------CCSCEEEEEECTTSTTEEE----EEES
T ss_pred CCCceeeeeeec--------c--------------------------------ccccccchhhhhcccceEE----Eeec
Confidence 21100 000000 0 0000001111111 11111 3567
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
+|.|+|||+.+++.+..+.+|..+|.+|+|+|+| ++|||++.||+ |+|||+.. + +.+..+
T Consensus 248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~-------~----------~~~~~~- 308 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADF-------S----------EVFRDL- 308 (357)
T ss_dssp SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTS-------C----------EEEEEC-
T ss_pred ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCC-------C----------cEeEEC-
Confidence 8999999999999999999999999999999997 68999999876 99999853 2 333332
Q ss_pred cccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCCCCCc
Q 003221 427 RGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 427 RG~t~a~I~sIaFSp-Dg~~Las~S~dGTVhIw~l~~~gg~ 466 (838)
| |...|++|+||| |+++||++|.||+|+||++...+..
T Consensus 309 -~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 309 -S-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp -C-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred -C-CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 4 345799999998 8999999999999999999776543
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.92 E-value=2.9e-23 Score=230.17 Aligned_cols=259 Identities=13% Similarity=0.128 Sum_probs=185.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..++.+.|.-+.|.. + +++|++|..+| ++|||+. .+++...+..|+++|.++++.|+.
T Consensus 146 l~~h~~~V~~v~~~~----~---~~~l~sgs~D~~i~iwd~~-~~~~~~~~~~h~~~V~~v~~~p~~------------- 204 (410)
T 1vyh_C 146 LKGHTDSVQDISFDH----S---GKLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMPNG------------- 204 (410)
T ss_dssp ECCCSSCEEEEEECT----T---SSEEEEEETTSCCCEEETT-SSCEEECCCCCSSCEEEEEECSSS-------------
T ss_pred EeccCCcEEEEEEcC----C---CCEEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCEEEEEEeCCC-------------
Confidence 345778888888864 2 45677766665 9999995 466777888999999999999852
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eEEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVAV 207 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iLaV 207 (838)
.+|+..+. +++|++||+++++++.++.. ...|.++.++++ +|++
T Consensus 205 ~~l~s~s~---------------------------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 205 DHIVSASR---------------------------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 25544221 37899999999999999875 468999999875 6666
Q ss_pred Ee-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 208 ~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
+. ++.|++||+.++++..++..|..+ .. .++|.+....... ..
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~-------------v~-------~~~~~~~~~~~~~------~~---------- 295 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHV-------------VE-------CISWAPESSYSSI------SE---------- 295 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSC-------------EE-------EEEECCSCGGGGG------GG----------
T ss_pred EcCCCeEEEEECCCCceeeEecCCCce-------------EE-------EEEEcCcccccch------hh----------
Confidence 54 668999999999988887665542 12 2344332110000 00
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~ 366 (838)
..+.. .. .....+..+ .++..||.|+|||+.+++.+..+.
T Consensus 296 --~~~~~---------------------------------~~-~~~~~g~~l----~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 296 --ATGSE---------------------------------TK-KSGKPGPFL----LSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp --CCSCC-----------------------------------------CCEE----EEEETTSEEEEEETTTTEEEEEEE
T ss_pred --hcccc---------------------------------cc-ccCCCCCEE----EEEeCCCeEEEEECCCCceEEEEE
Confidence 00000 00 000001111 145679999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (838)
+|..+|.+++|+|+|++|+||+.||+ |+|||+.. + .++..+. + +...|.+++|+||+++|
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKN-------K----------RCMKTLN-A-HEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTT-------S----------CCCEEEE-C-CSSCEEEEEECSSSSCE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------ceEEEEc-C-CCCcEEEEEEcCCCCEE
Confidence 99999999999999999999999765 99999854 2 3455553 4 34579999999999999
Q ss_pred EEEeCCCeEEEEec
Q 003221 447 AIVSSKGTCHVFVL 460 (838)
Q Consensus 447 as~S~dGTVhIw~l 460 (838)
+++|.||+|+||++
T Consensus 396 ~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 396 VTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEETTSEEEEEC-
T ss_pred EEEeCCCcEEEEeC
Confidence 99999999999986
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.92 E-value=6.3e-23 Score=217.53 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=183.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..++.+.|..+.|.. + ++.|++|..+ .++|||++ .+.....+..|..+|..+++.|+.
T Consensus 9 ~~~h~~~V~~~~fsp----~---~~~l~s~~~dg~v~lWd~~-~~~~~~~~~~~~~~v~~~~~~~~~------------- 67 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHP----T---EPWVLTTLYSGRVELWNYE-TQVEVRSIQVTETPVRAGKFIARK------------- 67 (304)
T ss_dssp EEEECSCEEEEEECS----S---SSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGG-------------
T ss_pred ecCCCCceEEEEECC----C---CCEEEEEcCCCcEEEEECC-CCceeEEeeccCCcEEEEEEeCCC-------------
Confidence 345778899999965 3 3455555554 59999995 466667788899999999999752
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eEEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVAV 207 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iLaV 207 (838)
.+|+..+. +++|++||+++++.+..++. ...|.+++++++ +|++
T Consensus 68 ~~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 114 (304)
T 2ynn_A 68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114 (304)
T ss_dssp TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE
Confidence 35654321 37899999999999999975 568999999885 6666
Q ss_pred Ee-CCeEEEEECCCCcee-eEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCC
Q 003221 208 GL-ATQIYCFDALTLENK-FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (838)
Q Consensus 208 ~l-~~~I~IwD~~t~e~l-~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~s 285 (838)
+. ++.|++||+.++..+ ..+..|..+ . ..++|.+.
T Consensus 115 gs~D~~v~lWd~~~~~~~~~~~~~h~~~-------------v-------~~v~~~p~----------------------- 151 (304)
T 2ynn_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------V-------MCVAFNPK----------------------- 151 (304)
T ss_dssp EETTSCEEEEEGGGTTEEEEEECCCCSC-------------E-------EEEEECTT-----------------------
T ss_pred ECCCCeEEEEECCCCcchhhhhcccCCc-------------E-------EEEEECCC-----------------------
Confidence 55 668999999887443 334344332 1 12333321
Q ss_pred CCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003221 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (838)
Q Consensus 286 tsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~ 365 (838)
++.+++ ++..||+|+|||+........+
T Consensus 152 ----~~~~l~------------------------------------------------sgs~D~~v~iwd~~~~~~~~~~ 179 (304)
T 2ynn_A 152 ----DPSTFA------------------------------------------------SGCLDRTVKVWSLGQSTPNFTL 179 (304)
T ss_dssp ----CTTEEE------------------------------------------------EEETTSEEEEEETTCSSCSEEE
T ss_pred ----CCCEEE------------------------------------------------EEeCCCeEEEEECCCCCcccee
Confidence 001000 2456899999999877655555
Q ss_pred c-cCCCCeEEEEECC--CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003221 366 K-AHTSPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (838)
Q Consensus 366 ~-aH~spIsaLaFSP--dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 442 (838)
. .|...|.+++|+| ++.+||||+.||+ |+|||+.. + .++.++. |+ ...|.+++|+||
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~-------~----------~~~~~~~-~h-~~~v~~~~~~p~ 239 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQT-------K----------SCVATLE-GH-MSNVSFAVFHPT 239 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTT-------T----------EEEEEEE-CC-SSCEEEEEECSS
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCC-------C----------ccceeeC-CC-CCCEEEEEECCC
Confidence 4 6778999999987 7889999999775 99999964 2 4666764 54 356999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCccccccC
Q 003221 443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (838)
Q Consensus 443 g~~Las~S~dGTVhIw~l~~~gg~~~~~~H 472 (838)
+++|++++.||+|+||++........+..|
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 999999999999999999887665555555
No 9
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=7.1e-23 Score=224.18 Aligned_cols=227 Identities=13% Similarity=0.135 Sum_probs=163.0
Q ss_pred cCcEEEEEccCCCceeEEeee--------ccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 83 QNGFQVLDVEDASNFNELVSK--------RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 83 ~~G~qVWdv~~~g~v~ells~--------hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
+..+|+|+++...+..+.+.. ++..|++++|.|++ .+||+++++
T Consensus 103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-------------~~la~as~~--------------- 154 (365)
T 4h5i_A 103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-------------TVAAIASSK--------------- 154 (365)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-------------SCEEEEESC---------------
T ss_pred CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-------------CEEEEEECC---------------
Confidence 345999999765444443332 23558999999864 256654431
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeCCeEEEEECCCCceeeEEeecCC
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLATQIYCFDALTLENKFSVLTYPV 232 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~l~tL~t~p~ 232 (838)
. +++|+|||+++++++..+++...|.+|+|+++ +|+++.++.+++|+..+++.+........
T Consensus 155 ------~----------d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 4h5i_A 155 ------V----------PAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK 218 (365)
T ss_dssp ------S----------SCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT
T ss_pred ------C----------CCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCC
Confidence 1 38999999999999999999999999999986 88889899999999998876554322111
Q ss_pred cccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccccc
Q 003221 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (838)
Q Consensus 233 p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~kt 312 (838)
. .. + +.++|.++...+..
T Consensus 219 ~--------------~~--v--~~v~fspdg~~l~~-------------------------------------------- 236 (365)
T 4h5i_A 219 N--------------WS--L--SKINFIADDTVLIA-------------------------------------------- 236 (365)
T ss_dssp T--------------EE--E--EEEEEEETTEEEEE--------------------------------------------
T ss_pred C--------------CC--E--EEEEEcCCCCEEEE--------------------------------------------
Confidence 0 00 1 23444432111000
Q ss_pred ccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE----EEEeccCCCCeEEEEECCCCCEEEEEe
Q 003221 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTSPISALCFDPSGTLLVTAS 388 (838)
Q Consensus 313 ls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~----v~~~~aH~spIsaLaFSPdGtlLATAS 388 (838)
...++.....+++||+..... ...+.+|..+|.+|+|||||++||+|+
T Consensus 237 ----------------------------~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 237 ----------------------------ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp ----------------------------EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred ----------------------------EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 000111223578888876542 457789999999999999999999999
Q ss_pred cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 389 ~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
.||+ |+|||+.. | +.+.++.+|+. ..|++|+|||||++||++|.|+||+||+|..
T Consensus 289 ~D~~-V~iwd~~~-------~----------~~~~~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 289 NDNS-IALVKLKD-------L----------SMSKIFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTSC-EEEEETTT-------T----------EEEEEETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCE-EEEEECCC-------C----------cEEEEecCccc-CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9876 99999964 3 56777767754 5699999999999999999999999999954
No 10
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.92 E-value=1.2e-22 Score=214.78 Aligned_cols=264 Identities=11% Similarity=0.102 Sum_probs=175.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCC-CceeEEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDA-SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~-g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..+|++.|.-+.|+. + ++.|++|..+ .++|||++.. ..+...+..|.++|.+|+|.|.. .
T Consensus 5 ~~~h~~~V~~~~~s~----~---g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-----------~ 66 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDY----Y---GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 66 (297)
T ss_dssp CCSCSSCEEEEEECT----T---SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------G
T ss_pred ccCCcCceEEEEECC----C---CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------c
Confidence 467889999999975 3 4456666655 5999999642 34567788999999999997531 1
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEeCCC---
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~--~V~tL~-f~s~V~sV~~s~~--- 203 (838)
..+||..+. +++|+|||+++++ .+..+. +...|.+++++++
T Consensus 67 g~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g 113 (297)
T 2pm7_B 67 GTILASCSY---------------------------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (297)
T ss_dssp CSEEEEEET---------------------------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEEcC---------------------------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC
Confidence 136655331 3789999999874 455555 4568999999873
Q ss_pred -eEEEEe-CCeEEEEECCCCce--eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCC
Q 003221 204 -IVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (838)
Q Consensus 204 -iLaV~l-~~~I~IwD~~t~e~--l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~ 279 (838)
+|+++. ++.|++||+.+.+. ...+..|..+ ...+ +|.+..... .+..
T Consensus 114 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~-------------v~~~-------~~~p~~~~~--~~~~------- 164 (297)
T 2pm7_B 114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSA-------SWAPATIEE--DGEH------- 164 (297)
T ss_dssp SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC-------------EEEE-------EECCCC----------------
T ss_pred cEEEEEECCCcEEEEEecCCCceeeeeeecccCc-------------cceE-------eecCCcccc--cccC-------
Confidence 566654 66899999987642 2333333331 2222 333211000 0000
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~ 359 (838)
. . ....+.+ +++..||+|+|||+.++
T Consensus 165 ----------~------------------------------~----------~~~~~~l----~sgs~D~~v~lwd~~~~ 190 (297)
T 2pm7_B 165 ----------N------------------------------G----------TKESRKF----VTGGADNLVKIWKYNSD 190 (297)
T ss_dssp -------------------------------------------------------CCEE----EEEETTSCEEEEEEETT
T ss_pred ----------C------------------------------C----------CCCcceE----EEEcCCCcEEEEEEcCC
Confidence 0 0 0000111 13567999999999876
Q ss_pred c----EEEEeccCCCCeEEEEECCCC---CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003221 360 A----IISQFKAHTSPISALCFDPSG---TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (838)
Q Consensus 360 ~----~v~~~~aH~spIsaLaFSPdG---tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a 432 (838)
+ ....|.+|..+|.+|+|+|++ .+|||+|.||+ |+|||+... .+ ......+....+..
T Consensus 191 ~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~-----~~---------~~~~~~~~~~~~~~ 255 (297)
T 2pm7_B 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNE-----QG---------PWKKTLLKEEKFPD 255 (297)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESST-----TS---------CCEEEESSSSCCSS
T ss_pred CceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCC-----CC---------ccceeeeecccCCC
Confidence 5 667899999999999999995 89999999876 999998531 01 01111221112345
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 433 ~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
.|++++|+||+++||+++.||+|+||++...+
T Consensus 256 ~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 79999999999999999999999999987543
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.92 E-value=2.4e-22 Score=218.45 Aligned_cols=256 Identities=11% Similarity=0.027 Sum_probs=186.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..+|++.|.-+.|.. + ++.|++|..+| ++|||+. .++....+..|...|..+++.|+.
T Consensus 60 l~gH~~~V~~~~~s~----d---~~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~~~~v~~~~~sp~g------------- 118 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCK----D---KRRIVSSSQDGKVIVWDSF-TTNKEHAVTMPCTWVMACAYAPSG------------- 118 (354)
T ss_dssp EECCSSCEEEEEECT----T---SSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCEEEECTTS-------------
T ss_pred ecCCCCeEEEEEECC----C---CCEEEEEeCCCeEEEEECC-CCCcceEEecCCCCEEEEEECCCC-------------
Confidence 467899999999965 3 35666666665 9999985 466667778888899999999853
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCC------eEEEEE-eCCCcEEEEEeCCC
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVL-RFRSSVCMVRCSPR 203 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg------~~V~tL-~f~s~V~sV~~s~~ 203 (838)
.+||..+ .++++++|++... .....+ .+...|.+++|+++
T Consensus 119 ~~lasg~---------------------------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 165 (354)
T 2pbi_B 119 CAIACGG---------------------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165 (354)
T ss_dssp SEEEEES---------------------------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS
T ss_pred CEEEEee---------------------------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC
Confidence 2555321 1378999998643 223344 35678999999875
Q ss_pred --eEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCC
Q 003221 204 --IVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (838)
Q Consensus 204 --iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~ 280 (838)
.|++ +.++.|++||+.+++.+.++..|..+ ...+ ++..+.
T Consensus 166 ~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-------------v~~~-------~~~~~~----------------- 208 (354)
T 2pbi_B 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGAD-------------VLCL-------DLAPSE----------------- 208 (354)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEE-------EECCCS-----------------
T ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-------------eEEE-------EEEeCC-----------------
Confidence 4544 55678999999999988888766542 1112 222110
Q ss_pred CCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc
Q 003221 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (838)
Q Consensus 281 ~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~ 360 (838)
.+.++ .++..||.|++||+.+++
T Consensus 209 ---------~g~~l------------------------------------------------~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 209 ---------TGNTF------------------------------------------------VSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp ---------SCCEE------------------------------------------------EEEETTSCEEEEETTTCC
T ss_pred ---------CCCEE------------------------------------------------EEEeCCCeEEEEECCCCc
Confidence 00000 024568999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 440 (838)
.+..+.+|..+|.+++|+|+|.+|||++.||+ |+|||+.. + ..+..+........+.+++|+
T Consensus 232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRA-------D----------REVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEEC
T ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEEcCCCcccceeEEEEe
Confidence 99999999999999999999999999999876 99999953 2 344444332233468999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
||+++|++++.|++|+||++........+.+|.
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~ 326 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEEECCC
Confidence 999999999999999999997655455566664
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.92 E-value=1.2e-22 Score=236.93 Aligned_cols=344 Identities=13% Similarity=0.072 Sum_probs=203.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..++++.|..+.|.. +. +..|++|..+ .++|||.. .+++...+..|.+.|.+++|.|++
T Consensus 143 l~gh~~~v~~v~f~p----~~--~~~l~s~s~D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg------------- 202 (611)
T 1nr0_A 143 LTGQARAMNSVDFKP----SR--PFRIISGSDDNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDG------------- 202 (611)
T ss_dssp CCCCSSCEEEEEECS----SS--SCEEEEEETTSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred ecCCCCCceEEEECC----CC--CeEEEEEeCCCeEEEEECC-CCeEeeeeccccCceEEEEECCCC-------------
Confidence 456788898888864 21 2345555554 59999985 466777888999999999999863
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe--------CCCcEEEEEeCC
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR--------FRSSVCMVRCSP 202 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~--------f~s~V~sV~~s~ 202 (838)
.+||..+. +++|+|||+++++.+..+. +...|.+++|++
T Consensus 203 ~~las~s~---------------------------------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 203 SLFASTGG---------------------------------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp SEEEEEET---------------------------------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred CEEEEEEC---------------------------------CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 36665332 2679999999998888873 556899999987
Q ss_pred C--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccC------------------------------CCCccccccccce
Q 003221 203 R--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLA------------------------------GQGAVGINVGYGP 249 (838)
Q Consensus 203 ~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~------------------------------~~~~~~~~~g~g~ 249 (838)
+ +|+++. ++.|++||+.+++++.++......... .....+.......
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~ 329 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA 329 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence 5 566544 567999999988877766422100000 0000011112345
Q ss_pred eEEcc--cEEEEeC--CCceeecCCCCC-CcccCC----CCCCCCCCCCCCcceeeeehhhh---hhhhcccc-------
Q 003221 250 MAVGP--RWLAYAS--NTLLLSNSGRLS-PQNLTP----SGVSPSTSPGGSSLVARYAMEHS---KQFAAGLS------- 310 (838)
Q Consensus 250 ~Alsp--r~LAys~--~~~~l~~~G~vs-~q~l~~----~~~s~stsps~gslva~~A~ds~---k~la~Gl~------- 310 (838)
++++| ++|+.++ ..+.+|+..... ...+.. ...+...++. +.+ +....+.. +.+..+..
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~-~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~ 407 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDL-FTVSWDDHLKVVPAGGSGVDSSKAVA 407 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCE-EEEETTTEEEEECSSSSSSCTTSCCE
T ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC-CcE-EEEEcCCceEEeecCCccccccceee
Confidence 67766 6777654 356788752110 011100 0000111111 121 11111111 00000000
Q ss_pred ccccccc--cccCCCC--------------------------CCCCccCCCccccccccccccCCCceEEEEECCCCcE-
Q 003221 311 KTLSKYC--QELLPDG--------------------------SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI- 361 (838)
Q Consensus 311 ktls~y~--~~~~p~g--------------------------s~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~- 361 (838)
.++.... -.+.|++ ......++++++.++ .+..||+|+|||+.++..
T Consensus 408 ~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~la----sgs~D~~v~lwd~~~~~~~ 483 (611)
T 1nr0_A 408 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVA----VGGQDSKVHVYKLSGASVS 483 (611)
T ss_dssp EECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEE----EEETTSEEEEEEEETTEEE
T ss_pred eecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEE----EeCCCCeEEEEEccCCcee
Confidence 0000000 0000111 011122333334333 467899999999987653
Q ss_pred -EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003221 362 -ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (838)
Q Consensus 362 -v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 440 (838)
+.. .+|..+|.+|+|+|||++||+++.|++ |++|++... + ..+.....+.|...|.+|+||
T Consensus 484 ~~~~-~~h~~~v~~v~fspdg~~las~s~d~~-v~~w~~~~~------~----------~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 484 EVKT-IVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANN------F----------ELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp EEEE-EECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGT------T----------EESCCCCCCCCSSCEEEEEEC
T ss_pred eeec-cCCCCceEEEEECCCCCEEEEEcCCCC-EEEEEcCCC------C----------ceeeeeeeeecccceeEEEEC
Confidence 234 789999999999999999999999776 999998531 1 122221123245679999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCCCCcc--ccccC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSPFGGDS--GFQTL 472 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~~gg~~--~~~~H 472 (838)
|||++||++|.|++|+||+++...... .+.+|
T Consensus 546 pdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 546 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred CCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence 999999999999999999998654322 34455
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.91 E-value=6e-22 Score=211.73 Aligned_cols=248 Identities=17% Similarity=0.164 Sum_probs=178.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC----ceeEEeeeccCcEEEEEEecCCCCCCCCCCc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g----~v~ells~hdg~V~~l~~lP~p~~~~~~d~F 126 (838)
.++|++.|.-+.|.. + .+++|++|..+ .++|||+.... .....+..|.++|..+++.|++
T Consensus 13 l~gH~~~V~~l~~~~----~--~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--------- 77 (319)
T 3frx_A 13 LEGHNGWVTSLATSA----G--QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--------- 77 (319)
T ss_dssp ECCCSSCEEEEEECS----S--CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---------
T ss_pred EccccceEEEEEccC----C--CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---------
Confidence 578899999888853 1 13466666655 59999996422 1234577899999999999753
Q ss_pred ccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--
Q 003221 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR-- 203 (838)
Q Consensus 127 ~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~-- 203 (838)
.+|+..+. +++|++||+++++.+..+. +...|.+++++++
T Consensus 78 ----~~l~s~s~---------------------------------D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 120 (319)
T 3frx_A 78 ----AYALSASW---------------------------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120 (319)
T ss_dssp ----SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC
T ss_pred ----CEEEEEeC---------------------------------CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC
Confidence 25554321 3789999999999999886 4579999999875
Q ss_pred eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCC
Q 003221 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (838)
Q Consensus 204 iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~ 282 (838)
+|+++. ++.|++||+.. +++.++..|..+ ... +++.+....
T Consensus 121 ~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~-------------v~~-------~~~~~~~~~----------------- 162 (319)
T 3frx_A 121 MIISGSRDKTIKVWTIKG-QCLATLLGHNDW-------------VSQ-------VRVVPNEKA----------------- 162 (319)
T ss_dssp EEEEEETTSCEEEEETTS-CEEEEECCCSSC-------------EEE-------EEECCC--------------------
T ss_pred EEEEEeCCCeEEEEECCC-CeEEEEeccCCc-------------EEE-------EEEccCCCC-----------------
Confidence 566554 66899999974 556665554432 111 222221000
Q ss_pred CCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE
Q 003221 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (838)
Q Consensus 283 s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v 362 (838)
...+.. + .++..+|+|++||+.+.+..
T Consensus 163 -----~~~~~~--------------------------------------------l----~s~~~d~~i~~wd~~~~~~~ 189 (319)
T 3frx_A 163 -----DDDSVT--------------------------------------------I----ISAGNDKMVKAWNLNQFQIE 189 (319)
T ss_dssp --------CCE--------------------------------------------E----EEEETTSCEEEEETTTTEEE
T ss_pred -----CCCccE--------------------------------------------E----EEEeCCCEEEEEECCcchhh
Confidence 000000 0 13457899999999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003221 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (838)
Q Consensus 363 ~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 442 (838)
..+.+|..+|.+|+|+|+|++|||++.||+ |+|||+.. + +.++.+.. ...|.+++|+||
T Consensus 190 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~~---~~~v~~~~~sp~ 248 (319)
T 3frx_A 190 ADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAA-------K----------KAMYTLSA---QDEVFSLAFSPN 248 (319)
T ss_dssp EEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTT-------T----------EEEEEEEC---CSCEEEEEECSS
T ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEecC---CCcEEEEEEcCC
Confidence 999999999999999999999999999775 99999964 2 46666642 246999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCC
Q 003221 443 SQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 443 g~~Las~S~dGTVhIw~l~~~g 464 (838)
+++|++++.+ .++||++++..
T Consensus 249 ~~~la~~~~~-~i~v~~~~~~~ 269 (319)
T 3frx_A 249 RYWLAAATAT-GIKVFSLDPQY 269 (319)
T ss_dssp SSEEEEEETT-EEEEEEETTEE
T ss_pred CCEEEEEcCC-CcEEEEeCcCe
Confidence 9999998866 59999997643
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.91 E-value=9.4e-22 Score=211.75 Aligned_cols=235 Identities=11% Similarity=0.107 Sum_probs=170.6
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC---ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g---~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
+...|.-+.|.. + ++.|++|..+ .++|||+.... .+...+..|.+.|.++.+.|+.
T Consensus 96 ~~~~v~~~~~s~----~---~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------- 155 (340)
T 1got_B 96 RSSWVMTCAYAP----S---GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN------------- 155 (340)
T ss_dssp SSSCEEEEEECT----T---SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-------------
T ss_pred CCccEEEEEECC----C---CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-------------
Confidence 344455555543 2 4566666655 49999996432 2345567889999999998642
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAV 207 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV 207 (838)
.|+..+. +++|++||+++++.+.++. +...|.+++++++ +|++
T Consensus 156 -~l~s~s~---------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 156 -QIVTSSG---------------------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp -EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred -cEEEEEC---------------------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 3443221 2679999999999999987 4568999999885 5665
Q ss_pred Ee-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 208 ~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
+. ++.|++||+.++++..++..|..+ ...+ +|.++.
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~-------------v~~v-------~~~p~~----------------------- 238 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESD-------------INAI-------CFFPNG----------------------- 238 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSC-------------EEEE-------EECTTS-----------------------
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCC-------------EEEE-------EEcCCC-----------------------
Confidence 54 678999999999888877665442 2223 332210
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~ 366 (838)
.+++ ++..||.|+|||+.+++.+..+.
T Consensus 239 -----~~l~------------------------------------------------s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 239 -----NAFA------------------------------------------------TGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp -----SEEE------------------------------------------------EEETTSCEEEEETTTTEEEEEEC
T ss_pred -----CEEE------------------------------------------------EEcCCCcEEEEECCCCcEEEEEc
Confidence 0000 24568999999999988877775
Q ss_pred c--CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003221 367 A--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (838)
Q Consensus 367 a--H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~ 444 (838)
. |..+|.+++|+|+|++|++++.||+ |+|||+.. + ..+..+ .|+ ...|.+|+|+||++
T Consensus 266 ~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~-------~----------~~~~~~-~~h-~~~v~~~~~s~dg~ 325 (340)
T 1got_B 266 HDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALK-------A----------DRAGVL-AGH-DNRVSCLGVTDDGM 325 (340)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTT-------C----------CEEEEE-ECC-SSCEEEEEECTTSS
T ss_pred cCCcccceEEEEECCCCCEEEEECCCCe-EEEEEccc-------C----------cEeeEe-ecC-CCcEEEEEEcCCCC
Confidence 3 3458999999999999999999775 99999854 2 355555 354 45799999999999
Q ss_pred EEEEEeCCCeEEEEe
Q 003221 445 WIAIVSSKGTCHVFV 459 (838)
Q Consensus 445 ~Las~S~dGTVhIw~ 459 (838)
+||+++.||+|+||+
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 999999999999996
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.1e-22 Score=218.50 Aligned_cols=256 Identities=18% Similarity=0.170 Sum_probs=176.3
Q ss_pred eEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEE
Q 003221 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (838)
Q Consensus 98 ~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~I 177 (838)
.+.+..|+++|.+|++.|+.. ....+|+..+ . +++|+|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~---------~~~~~l~tgs-----------------------~----------D~~v~v 62 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKK---------ENSETVVTGS-----------------------L----------DDLVKV 62 (321)
T ss_dssp EEETTSSSSCEEEEEEC----------------CEEEEEE-----------------------T----------TSCEEE
T ss_pred eeecccCCCcEEEEEEecCCC---------CCCCEEEEEc-----------------------C----------CCCEEE
Confidence 344567999999999997531 1123554422 1 378999
Q ss_pred EECCCCeEEE--EEe-CCCcEEEEEeCCC--eEEEE-eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeE
Q 003221 178 YSFQSHCYEH--VLR-FRSSVCMVRCSPR--IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (838)
Q Consensus 178 WDl~tg~~V~--tL~-f~s~V~sV~~s~~--iLaV~-l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~A 251 (838)
||+.+++... .++ +...|.+++++++ +++++ .++.|++||+.+++.+.++..++.. ...++
T Consensus 63 W~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-------------~~~~~ 129 (321)
T 3ow8_A 63 WKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-------------AWTLA 129 (321)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-------------CCCEE
T ss_pred EECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-------------EEEEE
Confidence 9998886543 343 3468999999875 56654 4678999999999988888765542 33567
Q ss_pred Ecc--cEEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCC
Q 003221 252 VGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (838)
Q Consensus 252 lsp--r~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s 327 (838)
++| ++||.+.. .+.+|+.... .... ++.. ......
T Consensus 130 ~spdg~~l~~g~~dg~v~i~~~~~~-------------------~~~~----------------~~~~------~~~~v~ 168 (321)
T 3ow8_A 130 FSPDSQYLATGTHVGKVNIFGVESG-------------------KKEY----------------SLDT------RGKFIL 168 (321)
T ss_dssp ECTTSSEEEEECTTSEEEEEETTTC-------------------SEEE----------------EEEC------SSSCEE
T ss_pred ECCCCCEEEEEcCCCcEEEEEcCCC-------------------ceeE----------------EecC------CCceEE
Confidence 776 77877654 3456653110 0000 0000 000011
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCC
Q 003221 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (838)
Q Consensus 328 ~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~ 407 (838)
...+++.++.++ .+..+|.|+|||+.+++.+..+.+|..+|.+|+|+|+|++||||+.||+ |+|||+..
T Consensus 169 ~~~~spdg~~la----sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~------ 237 (321)
T 3ow8_A 169 SIAYSPDGKYLA----SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQH------ 237 (321)
T ss_dssp EEEECTTSSEEE----EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTT------
T ss_pred EEEECCCCCEEE----EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCC------
Confidence 112222333333 4567999999999999999999999999999999999999999999876 99999954
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 408 ~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
+ ..+.++ .|+ ...|.+++|+||+++|++++.|++|+||++........+..|.
T Consensus 238 -~----------~~~~~~-~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~ 290 (321)
T 3ow8_A 238 -A----------NLAGTL-SGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290 (321)
T ss_dssp -C----------CEEEEE-CCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred -c----------ceeEEE-cCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence 2 355555 443 4579999999999999999999999999998766555666664
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.91 E-value=9.9e-22 Score=210.04 Aligned_cols=240 Identities=12% Similarity=0.170 Sum_probs=173.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..+|++.|.-+.|.. + ++.|++|..+ .++|||+. .++....+..|.++|.++.+.|+.
T Consensus 61 ~~~h~~~v~~~~~s~----d---g~~l~s~s~D~~v~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~------------- 119 (319)
T 3frx_A 61 FKGHSHIVQDCTLTA----D---GAYALSASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKA------------- 119 (319)
T ss_dssp EECCSSCEEEEEECT----T---SSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEECTTS-------------
T ss_pred EeCCcccEEEEEECC----C---CCEEEEEeCCCEEEEEECC-CCCeeEEEccCCCcEEEEEEcCCC-------------
Confidence 345777777777754 2 4566666655 59999995 567777888999999999999752
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEeCCC------
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSPR------ 203 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL-~f~s~V~sV~~s~~------ 203 (838)
.+|+..+. +++|++||++. +.+.++ .+...|.++++.+.
T Consensus 120 ~~l~s~s~---------------------------------D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 120 SMIISGSR---------------------------------DKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp CEEEEEET---------------------------------TSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCC
Confidence 25554221 27899999975 455555 45678999999773
Q ss_pred --eEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCC
Q 003221 204 --IVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (838)
Q Consensus 204 --iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~ 280 (838)
+|++ +.++.|++||+.+++....+..|..+ ... |++.++.
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~-------~~~sp~g----------------- 208 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN-------------INT-------LTASPDG----------------- 208 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC-------------EEE-------EEECTTS-----------------
T ss_pred ccEEEEEeCCCEEEEEECCcchhheeecCCCCc-------------EEE-------EEEcCCC-----------------
Confidence 4554 55678999999998877776655442 122 3333211
Q ss_pred CCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc
Q 003221 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (838)
Q Consensus 281 ~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~ 360 (838)
.+++ ++..||.|+|||+.+++
T Consensus 209 -----------~~l~------------------------------------------------s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 209 -----------TLIA------------------------------------------------SAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp -----------SEEE------------------------------------------------EEETTCEEEEEETTTTE
T ss_pred -----------CEEE------------------------------------------------EEeCCCeEEEEECCCCc
Confidence 0110 24568999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc------cccccE
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG------ITSATI 434 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG------~t~a~I 434 (838)
.+..+..| .+|.+++|+|+|.+||+++.+ .|+||++.+. ..+..++.. .+...|
T Consensus 230 ~~~~~~~~-~~v~~~~~sp~~~~la~~~~~--~i~v~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~v 289 (319)
T 3frx_A 230 AMYTLSAQ-DEVFSLAFSPNRYWLAAATAT--GIKVFSLDPQ-----------------YLVDDLRPEFAGYSKAAEPHA 289 (319)
T ss_dssp EEEEEECC-SCEEEEEECSSSSEEEEEETT--EEEEEEETTE-----------------EEEEEECCCCTTCCGGGCCCE
T ss_pred EEEEecCC-CcEEEEEEcCCCCEEEEEcCC--CcEEEEeCcC-----------------eeeeccCccccccccCcCcce
Confidence 98888865 689999999999999999863 3999999641 234444321 123468
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 435 QDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 435 ~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
.+++|||||++|++++.||+|+||++.+
T Consensus 290 ~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 290 VSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred eEEEECCCCCEEEEeecCceEEEEEEee
Confidence 9999999999999999999999999864
No 17
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.91 E-value=9.3e-22 Score=215.36 Aligned_cols=275 Identities=10% Similarity=0.078 Sum_probs=184.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..+|++.|.-+.|.. + ++.|++|..+| ++|||+. .+.....+..|...|..+++.|+.
T Consensus 62 l~gH~~~V~~~~~sp----~---~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~h~~~v~~~~~s~~g------------- 120 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTP----E---KNWIVSASQDGRLIVWNAL-TSQKTHAIKLHCPWVMECAFAPNG------------- 120 (380)
T ss_dssp ECCCSSCEEEEEECT----T---SSCEEEEETTSEEEEEETT-TTEEEEEEECCCTTCCCCEECTTS-------------
T ss_pred ccccccEEEEEEEcC----C---CCEEEEEeCCCeEEEEECC-CCccceEEecCCCCEEEEEECCCC-------------
Confidence 467889999999865 3 34566666655 9999995 466677788899999999999864
Q ss_pred cEEEEEECCCCCcC----------C---CC-CCCCCCCCcccCccCCCCCC---CCCCCCEEEEEECCCCeEEEEEe---
Q 003221 131 PFLLVVAGEDTNTL----------A---PG-QNRSHLGGVRDGMMDSQSGN---CVNSPTAVRFYSFQSHCYEHVLR--- 190 (838)
Q Consensus 131 pLLavV~~d~t~~~----------~---~~-~~~~~~~~~~~gs~d~~~~~---~~~~p~tV~IWDl~tg~~V~tL~--- 190 (838)
.+||..+.|++-.. + .. .-.+|.+.+....+.+..+. +...+++|++||+++++.+..+.
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 24443222221000 0 00 00122222222222221111 11345899999999999998873
Q ss_pred ---CCCcEEEEEeCC---CeEEEEe-CCeEEEEECCC-CceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCC
Q 003221 191 ---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN 262 (838)
Q Consensus 191 ---f~s~V~sV~~s~---~iLaV~l-~~~I~IwD~~t-~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~ 262 (838)
+...|.++.+++ ++|+++. ++.|++||++. .+.+.++..|..+ ...+ +|.++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~-------------v~~v-------~~~p~ 260 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD-------------INSV-------KFFPD 260 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------------CCEE-------EECTT
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------------eEEE-------EEecC
Confidence 345899999965 4666655 67899999984 4555555555432 2223 33221
Q ss_pred CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccc
Q 003221 263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 342 (838)
Q Consensus 263 ~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~ 342 (838)
. ..+
T Consensus 261 ~----------------------------~~l------------------------------------------------ 264 (380)
T 3iz6_a 261 G----------------------------QRF------------------------------------------------ 264 (380)
T ss_dssp S----------------------------SEE------------------------------------------------
T ss_pred C----------------------------CeE------------------------------------------------
Confidence 0 000
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCC-------CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcccc
Q 003221 343 ADMDNAGIVVVKDFVTRAIISQFKAHTS-------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (838)
Q Consensus 343 ~~g~~~G~V~VwDl~s~~~v~~~~aH~s-------pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~ 415 (838)
++++.||+|+|||+.+++.+..+..|.. .|.+++|+|+|++|++++.+|+ |+|||+.. +
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~-------~------ 330 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLL-------A------ 330 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTT-------C------
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCC-------C------
Confidence 0245789999999999998888876533 4899999999999999999886 99999853 2
Q ss_pred CCcceEEEEEe---cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 416 NSSHVHLYKLH---RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 416 ~~~~~~l~~L~---RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
..+..+. .+ +...|.+++|||||++|+++|.||+|+||++..
T Consensus 331 ----~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 331 ----EMVLNLGTLQNS-HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp ----CEEEEECCSCSS-CCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ----ceEEEEecccCC-CCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 3555552 33 445799999999999999999999999999864
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.90 E-value=2.1e-22 Score=219.63 Aligned_cols=250 Identities=15% Similarity=0.067 Sum_probs=175.4
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEcc----------CCCceeEEeeeccCcEEEEEEecCCCCCCCCC
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVE----------DASNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~----------~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d 124 (838)
....|.-+.|.. | +++|+.|.+..+++||.. .........-.++.+|.+++|.|+.
T Consensus 29 ~~~~v~~~~fs~----d---G~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~------- 94 (344)
T 4gqb_B 29 MERQLEAARYRS----D---GALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER------- 94 (344)
T ss_dssp CCSEEEEEEECT----T---SCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-------
T ss_pred ccCCEEEEEECC----C---CCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-------
Confidence 456688888865 4 578888888888888742 0111111222356789999999742
Q ss_pred CcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCcEEEEE
Q 003221 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCMVR 199 (838)
Q Consensus 125 ~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-----f~s~V~sV~ 199 (838)
.|++.+. +++|+|||+.+++.+..++ +...|.+|+
T Consensus 95 -------~l~~~s~---------------------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~ 134 (344)
T 4gqb_B 95 -------GILVASD---------------------------------SGAVELWELDENETLIVSKFCKYEHDDIVSTVS 134 (344)
T ss_dssp -------EEEEEET---------------------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEE
T ss_pred -------eEEEEEC---------------------------------CCEEEEEeccCCCceeEeeccccCCCCCEEEEE
Confidence 3443221 3789999999998665553 457999999
Q ss_pred eCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcc
Q 003221 200 CSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN 276 (838)
Q Consensus 200 ~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~ 276 (838)
|+++ +|+++. ++.|++||+.+++++.++..|..+ .. .++|..+.
T Consensus 135 ~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------------V~-------~~~~~~~~------------- 181 (344)
T 4gqb_B 135 VLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------------VT-------CVAASPHK------------- 181 (344)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EE-------EEEECSSC-------------
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc-------------eE-------EEEecCCC-------------
Confidence 9875 677665 568999999999998888776553 11 23332210
Q ss_pred cCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEEC
Q 003221 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (838)
Q Consensus 277 l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl 356 (838)
..++ ++++.||+|+|||+
T Consensus 182 --------------~~~l------------------------------------------------~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 182 --------------DSVF------------------------------------------------LSCSEDNRILLWDT 199 (344)
T ss_dssp --------------TTEE------------------------------------------------EEEETTSCEEEEET
T ss_pred --------------CCce------------------------------------------------eeeccccccccccc
Confidence 0000 02456899999999
Q ss_pred CCCcEEEEec--cCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 003221 357 VTRAIISQFK--AHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (838)
Q Consensus 357 ~s~~~v~~~~--aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~ 433 (838)
.+++.+..+. .|...+.+++|+|+ +.+||+|+.||+ |+|||+.. + +.+++|. |+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~-------~----------~~~~~~~-~h-~~~ 259 (344)
T 4gqb_B 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKS-------T----------SCVLSSA-VH-SQC 259 (344)
T ss_dssp TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC-------------------CCEEEE-CC-SSC
T ss_pred cccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCC-------C----------cEEEEEc-CC-CCC
Confidence 9999888775 46678999999995 678999999775 99999964 2 3556664 43 346
Q ss_pred EEEEEEccCC-CEEEEEeCCCeEEEEecCCCCCccccccCCC
Q 003221 434 IQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 434 I~sIaFSpDg-~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
|++|+|+||+ ++||++|.|++|+||++... ....+.+|..
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~~~~~~~H~~ 300 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-ELFRSQAHRD 300 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCC-EEEEECCCSS
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCC-cEEEEcCCCC
Confidence 9999999998 58999999999999998754 3445567753
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.90 E-value=9.5e-22 Score=216.25 Aligned_cols=261 Identities=14% Similarity=0.129 Sum_probs=178.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeecc------------------CcEEEEEEecC
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRD------------------GPVSFLQMQPF 116 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hd------------------g~V~~l~~lP~ 116 (838)
+++.|.-+.|.. + ++.|++|.++.++||++.. +++...+..+. ..|.+++|.|+
T Consensus 63 h~~~V~~v~fsp----d---g~~la~g~~~~v~i~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 63 HTSVVCCVKFSN----D---GEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp CSSCCCEEEECT----T---SSEEEEECBSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCCEEEEEEECC----C---CCEEEEEcCCcEEEEEecC-CCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 566666666644 3 5789999988999999964 55555554332 23888888875
Q ss_pred CCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcE
Q 003221 117 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSV 195 (838)
Q Consensus 117 p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V 195 (838)
. .+||..+. +++|++||+.+++.+..+. +...|
T Consensus 135 g-------------~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~v 168 (393)
T 1erj_A 135 G-------------KFLATGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQDI 168 (393)
T ss_dssp S-------------SEEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCE
T ss_pred C-------------CEEEEEcC---------------------------------CCeEEEEECCCCcEEEEEccCCCCE
Confidence 2 35654321 2689999999999999886 45689
Q ss_pred EEEEeCCC--eEEEE-eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCC
Q 003221 196 CMVRCSPR--IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (838)
Q Consensus 196 ~sV~~s~~--iLaV~-l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~v 272 (838)
.+++++++ +|+++ .++.|++||+.++++..++... .. ...+ ++.+
T Consensus 169 ~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~-------------v~~~-------~~~~----------- 216 (393)
T 1erj_A 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DG-------------VTTV-------AVSP----------- 216 (393)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SC-------------EEEE-------EECS-----------
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC-CC-------------cEEE-------EEEC-----------
Confidence 99999875 55554 5678999999999877665421 10 1112 2221
Q ss_pred CCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEE
Q 003221 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (838)
Q Consensus 273 s~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~ 352 (838)
..+.+++ .+..+|.|+
T Consensus 217 ----------------~~~~~l~------------------------------------------------~~s~d~~v~ 232 (393)
T 1erj_A 217 ----------------GDGKYIA------------------------------------------------AGSLDRAVR 232 (393)
T ss_dssp ----------------TTCCEEE------------------------------------------------EEETTSCEE
T ss_pred ----------------CCCCEEE------------------------------------------------EEcCCCcEE
Confidence 0111111 235689999
Q ss_pred EEECCCCcEEEEe-------ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 353 VKDFVTRAIISQF-------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 353 VwDl~s~~~v~~~-------~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
|||+.+++.+..+ .+|..+|.+|+|+|+|++|||++.||+ |+|||+........ ........+...+
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~~~-----~~~~~~~~~~~~~ 306 (393)
T 1erj_A 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSD-----SKTPNSGTCEVTY 306 (393)
T ss_dssp EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC--------------------CEEEEE
T ss_pred EEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCccc-----ccCCCCCcceEEE
Confidence 9999998887777 689999999999999999999999765 99999864200000 0000011233444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
.|+ ...|.+++|+||+++|++++.||+|+||++........+++|.
T Consensus 307 -~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~ 352 (393)
T 1erj_A 307 -IGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 352 (393)
T ss_dssp -ECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred -ecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence 343 3469999999999999999999999999998765555666674
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.90 E-value=6.6e-22 Score=224.96 Aligned_cols=302 Identities=18% Similarity=0.172 Sum_probs=195.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLL 133 (838)
+...|..+.|.. .++.|++|..++ +++||.+ +++.+.+..|.++|..+++.|+. .+|
T Consensus 261 ~~~~v~~v~~~~-------d~~~l~~~~~d~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~-------------~~l 318 (577)
T 2ymu_A 261 HSSSVNGVAFRP-------DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDG-------------QTI 318 (577)
T ss_dssp CSSCEEEEEECT-------TSSEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECTTS-------------SEE
T ss_pred CCCCEEEEEEcC-------CCCEEEEEeCCCEEEEEeCC--CcEEEEEecCCCCeEEEEECCCC-------------CEE
Confidence 444555555532 245666666654 9999973 56777888899999999999752 356
Q ss_pred EEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEEEe-
Q 003221 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVGL- 209 (838)
Q Consensus 134 avV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV~l- 209 (838)
+..+. +++|++||+...+ +..+. +...|.+++++++ +|+++.
T Consensus 319 ~t~~~---------------------------------d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 364 (577)
T 2ymu_A 319 ASASD---------------------------------DKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASD 364 (577)
T ss_dssp EEEET---------------------------------TSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeC---------------------------------CCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeC
Confidence 54331 2679999986654 44554 5679999999875 777766
Q ss_pred CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCC--CceeecCCCCCCcccCC---CCC
Q 003221 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTP---SGV 282 (838)
Q Consensus 210 ~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~--~~~l~~~G~vs~q~l~~---~~~ 282 (838)
++.|++||. +++.+.++..+..+ ...+++++ ++||.++. .+.+|+......+.+.. +..
T Consensus 365 dg~v~~~~~-~~~~~~~~~~~~~~-------------v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~ 430 (577)
T 2ymu_A 365 DKTVKLWNR-NGQLLQTLTGHSSS-------------VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430 (577)
T ss_dssp TSEEEEEET-TCCEEEEEECCSSC-------------EEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEE
T ss_pred CCEEEEEcC-CCCEEEEecCCCCC-------------eEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeE
Confidence 457999995 56777777665543 44577876 77876643 46678752211111211 000
Q ss_pred CCCCCCCCCcceeeeehhhh---hhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC
Q 003221 283 SPSTSPGGSSLVARYAMEHS---KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (838)
Q Consensus 283 s~stsps~gslva~~A~ds~---k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~ 359 (838)
....+|.+. +++....+.. +.+...+.+++.++. .......++++++.++ ++..+|.|+|||. ++
T Consensus 431 ~~~~s~d~~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~------~~v~~~~~spd~~~la----s~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 431 GVAFSPDDQ-TIASASDDKTVKLWNRNGQLLQTLTGHS------SSVRGVAFSPDGQTIA----SASDDKTVKLWNR-NG 498 (577)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTSCEEEEEECCS------SCEEEEEECTTSCEEE----EEETTSEEEEEET-TS
T ss_pred EEEECCCCC-EEEEEcCCCEEEEEECCCCEEEEEcCCC------CCEEEEEEcCCCCEEE----EEeCCCEEEEEcC-CC
Confidence 111233332 2222212211 111111112222111 1112233334444443 4568999999995 67
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003221 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (838)
Q Consensus 360 ~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF 439 (838)
+.+..+.+|..+|++|+|+|||++|||++.||. |+|||.. | +.+..+. |+ ...|++|+|
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~~--------~----------~~~~~~~-~h-~~~v~~~~f 557 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRN--------G----------QLLQTLT-GH-SSSVWGVAF 557 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECTT--------S----------CEEEEEE-CC-SSCEEEEEE
T ss_pred CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeCC--------C----------CEEEEEc-CC-CCCEEEEEE
Confidence 888999999999999999999999999999765 9999962 3 4666664 54 457999999
Q ss_pred ccCCCEEEEEeCCCeEEEEe
Q 003221 440 SHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 440 SpDg~~Las~S~dGTVhIw~ 459 (838)
+|||++|++++.|++|+||+
T Consensus 558 s~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 558 SPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999996
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.90 E-value=2.6e-21 Score=203.76 Aligned_cols=253 Identities=13% Similarity=0.170 Sum_probs=185.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..+|++.|.-+.|.. + ++.|++|..+ .++|||+. .+++...+..|.++|..+++.|+.
T Consensus 19 ~~gh~~~v~~~~~s~----~---~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~------------- 77 (312)
T 4ery_A 19 LAGHTKAVSSVKFSP----N---GEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS------------- 77 (312)
T ss_dssp ECCCSSCEEEEEECT----T---SSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred EcccCCcEEEEEECC----C---CCEEEEeeCCCeEEEEeCC-CcccchhhccCCCceEEEEEcCCC-------------
Confidence 457888999999965 3 4566666655 59999995 467778888999999999999752
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eEEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVAV 207 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iLaV 207 (838)
.+|+..+. +++|++||+++++.+..++. ...|.++.++++ +|++
T Consensus 78 ~~l~s~~~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 124 (312)
T 4ery_A 78 NLLVSASD---------------------------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124 (312)
T ss_dssp SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 35654321 27899999999999999875 568999999875 6665
Q ss_pred Ee-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 208 ~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
+. ++.|++||+.+++.+.++..+..+ .. .+++.++.
T Consensus 125 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------v~-------~~~~~~~~----------------------- 161 (312)
T 4ery_A 125 GSFDESVRIWDVKTGKCLKTLPAHSDP-------------VS-------AVHFNRDG----------------------- 161 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSC-------------EE-------EEEECTTS-----------------------
T ss_pred EeCCCcEEEEECCCCEEEEEecCCCCc-------------EE-------EEEEcCCC-----------------------
Confidence 54 678999999999887776654432 11 22332210
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~ 366 (838)
.+++ .+..+|.|+|||+.+++.+..+.
T Consensus 162 -----~~l~------------------------------------------------~~~~d~~i~~wd~~~~~~~~~~~ 188 (312)
T 4ery_A 162 -----SLIV------------------------------------------------SSSYDGLCRIWDTASGQCLKTLI 188 (312)
T ss_dssp -----SEEE------------------------------------------------EEETTSCEEEEETTTCCEEEEEC
T ss_pred -----CEEE------------------------------------------------EEeCCCcEEEEECCCCceeeEEe
Confidence 0000 23468899999999988877664
Q ss_pred -cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCC
Q 003221 367 -AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYS 443 (838)
Q Consensus 367 -aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a--~I~sIaFSpDg 443 (838)
.|..+|.+++|+|+|++|++++.+|. |+|||+.. + ..+..+. ++... .+....+.+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~-------~----------~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 189 DDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSK-------G----------KCLKTYT-GHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp CSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTT-------T----------EEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCC-------C----------cEEEEEE-ecCCceEEEEEEEEeCCC
Confidence 57788999999999999999999775 99999954 2 3455553 33222 23333445789
Q ss_pred CEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
++|++++.||+|+||++........+++|.
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 279 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred cEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence 999999999999999998776666677775
No 22
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.90 E-value=5.8e-22 Score=209.69 Aligned_cols=271 Identities=11% Similarity=0.080 Sum_probs=178.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEec-CCCCCCCCCCcccCCcE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP-~p~~~~~~d~F~~srpL 132 (838)
+.+.|.-+.|..-. ...+++|++|..+| ++|||+. .++....+..|.++|.++++.| ++ .+
T Consensus 68 ~~~~v~~~~~~~~~---~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~-------------~~ 130 (366)
T 3k26_A 68 ADENFYTCAWTYDS---NTSHPLLAVAGSRGIIRIINPI-TMQCIKHYVGHGNAINELKFHPRDP-------------NL 130 (366)
T ss_dssp TTCCEEEEEEEECT---TTCCEEEEEEETTCEEEEECTT-TCCEEEEEESCCSCEEEEEECSSCT-------------TE
T ss_pred CCCcEEEEEeccCC---CCCCCEEEEecCCCEEEEEEch-hceEeeeecCCCCcEEEEEECCCCC-------------CE
Confidence 55678878886621 11256788777776 9999996 4667777888999999999997 32 25
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE----eCCCcEEEEEeCCC--eEE
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL----RFRSSVCMVRCSPR--IVA 206 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL----~f~s~V~sV~~s~~--iLa 206 (838)
|++.+. +++|++||+++++.+..+ .+...|.+++++++ +|+
T Consensus 131 l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 131 LLSVSK---------------------------------DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp EEEEET---------------------------------TSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEE
T ss_pred EEEEeC---------------------------------CCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEE
Confidence 554321 267999999999999988 35679999999875 666
Q ss_pred EEe-CCeEEEEECCCCceeeEEeec--CCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCC
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTY--PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~--p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s 283 (838)
++. ++.|++||+.+++....+... -.|. ...+++...-...+. +..
T Consensus 178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~-------------- 226 (366)
T 3k26_A 178 SCGMDHSLKLWRINSKRMMNAIKESYDYNPN------------KTNRPFISQKIHFPD-----FST-------------- 226 (366)
T ss_dssp EEETTSCEEEEESCSHHHHHHHHHHHTCCGG------------GCSSCCCCEEECCCS-----EEE--------------
T ss_pred EecCCCCEEEEECCCCccccccceeEEecCC------------CCcccccceeeccCc-----ccc--------------
Confidence 654 678999999988765544321 0110 000000000000000 000
Q ss_pred CCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc---
Q 003221 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--- 360 (838)
Q Consensus 284 ~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~--- 360 (838)
+.. ..+....+.++ ...+ ..+..+|.|++||+.+++
T Consensus 227 -----------------------------~~~------~~~~v~~~~~~--~~~l----~~~~~d~~i~~wd~~~~~~~~ 265 (366)
T 3k26_A 227 -----------------------------RDI------HRNYVDCVRWL--GDLI----LSKSCENAIVCWKPGKMEDDI 265 (366)
T ss_dssp -----------------------------CSS------CSSCCCEEEEE--TTEE----EEECSSSEEEEEEESSTTCCG
T ss_pred -----------------------------ccC------CcceEEEEEEc--CCEE----EEEecCCEEEEEeCCCccccc
Confidence 000 00000000000 0111 135678999999998764
Q ss_pred -----------EEEEeccCCCCeEEEEECCC--CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 361 -----------IISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 361 -----------~v~~~~aH~spIsaLaFSPd--GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
.+..+..|..+|.+++|+|+ |++||+++.+|. |+|||+.. +. .....+..+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~~-------~~------~~~~~~~~~~~ 331 (366)
T 3k26_A 266 DKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLEV-------ED------PHKAKCTTLTH 331 (366)
T ss_dssp GGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECCS-------SS------GGGCEEEEECC
T ss_pred cccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECCC-------CC------CccccceEEcc
Confidence 48889999999999999999 999999999876 99999964 21 01124445533
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
..+...|.+++|+||+++|++++.||+|+||++.
T Consensus 332 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 332 HKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 2224679999999999999999999999999985
No 23
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=1.3e-21 Score=206.82 Aligned_cols=289 Identities=15% Similarity=0.139 Sum_probs=193.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcee-EEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN-ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~-ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
...+++.|.-+.|.. +...++.|++|..+| ++|||++..+... ..+..|.++|.++++.|+.
T Consensus 35 ~~~h~~~v~~~~~~~----~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------ 98 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSP----PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG------------ 98 (368)
T ss_dssp SSCCSSCEEEEEECC----TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS------------
T ss_pred ccCCCCceEEEEEcC----CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC------------
Confidence 466889999999976 222246788887766 9999997634443 7788899999999999852
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEe--CCC--eE
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRC--SPR--IV 205 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~--s~~--iL 205 (838)
.+|++.+. +++|++||+++++.+....+...|.++++ +++ +|
T Consensus 99 -~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 99 -SKVFTASC---------------------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV 144 (368)
T ss_dssp -SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEE
T ss_pred -CEEEEEcC---------------------------------CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEE
Confidence 35654331 27899999999999998888999999999 665 45
Q ss_pred EEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccE--EEEeCCCceeecCCCCCCcccCCCCC
Q 003221 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRW--LAYASNTLLLSNSGRLSPQNLTPSGV 282 (838)
Q Consensus 206 aV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~--LAys~~~~~l~~~G~vs~q~l~~~~~ 282 (838)
+++. ++.|++||+.+++.+.++..+.. ...+...... ++.....+.+|+.-... ..+....
T Consensus 145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~- 208 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNPMMVLQLPER--------------CYCADVIYPMAVVATAERGLIVYQLENQP-SEFRRIE- 208 (368)
T ss_dssp EEEETTSEEEEECSSCSSCSEEEECSSC--------------EEEEEEETTEEEEEEGGGCEEEEECSSSC-EEEEECC-
T ss_pred EEccCCCcEEEEECCCCcEEEEEecCCC--------------ceEEEecCCeeEEEeCCCcEEEEEecccc-chhhhcc-
Confidence 5554 67899999999998887765322 1122222222 23334455666641110 0000000
Q ss_pred CCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC---
Q 003221 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--- 359 (838)
Q Consensus 283 s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~--- 359 (838)
. +.... ..+ ..+..+....... ...+..+|.|+|||+...
T Consensus 209 ~----~~~~~----------------------~~~---------~~~~~~~~~~~~~--~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 209 S----PLKHQ----------------------HRC---------VAIFKDKQNKPTG--FALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp C----SCSSC----------------------EEE---------EEEEECTTSCEEE--EEEEETTSEEEEEESSCSCHH
T ss_pred c----cccCC----------------------Cce---------EEEcccCCCCCCe--EEEecCCCcEEEEecCCCCcc
Confidence 0 00000 000 0000000000000 114678999999999987
Q ss_pred cEEEEeccCCC------------CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 360 AIISQFKAHTS------------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 360 ~~v~~~~aH~s------------pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
..+..+.+|.. +|.+++|+|+|++||+++.||. |+|||+.. + ..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~- 312 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDA-------R----------TKLKTSE- 312 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEEEECC-
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCC-------C----------cEEEEec-
Confidence 56778888887 7999999999999999999887 99999964 3 4666664
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
+ +...|++++|+||+++|++++.|+..+.|++-..
T Consensus 313 ~-~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 313 Q-LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp C-CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred C-CCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 3 3457999999999999999999997776665443
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.90 E-value=2.6e-21 Score=209.05 Aligned_cols=258 Identities=15% Similarity=0.188 Sum_probs=173.1
Q ss_pred CCCCC-cEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCce--e-EEeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003221 53 EDLKD-QVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNF--N-ELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (838)
Q Consensus 53 ~~~~d-~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v--~-ells~hdg~V~~l~~lP~p~~~~~~d~F~ 127 (838)
.+|++ .|..+.|.. + +++|++|..+ .++|||++. +.. . .+...|.++|.++++.|+.
T Consensus 12 ~~h~~~~v~~l~~sp----~---g~~las~~~D~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~sp~g---------- 73 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNP----A---GTLLASCGGDRRIRIWGTEG-DSWICKSVLSEGHQRTVRKVAWSPCG---------- 73 (345)
T ss_dssp CCSTTSCEEEEEECT----T---SSCEEEEETTSCEEEEEEET-TEEEEEEEECSSCSSCEEEEEECTTS----------
T ss_pred cCCCCCcEEEEEECC----C---CCEEEEEcCCCeEEEEEcCC-CcceeeeeeccccCCcEEEEEECCCC----------
Confidence 45666 777777864 3 4566666655 599999964 332 2 2335788999999999853
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEeCCC-
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR- 203 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~--~V~tL~-f~s~V~sV~~s~~- 203 (838)
.+||..+. +++|+|||+.+++ .+.+++ +...|.+++++++
T Consensus 74 ---~~l~s~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 117 (345)
T 3fm0_A 74 ---NYLASASF---------------------------------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117 (345)
T ss_dssp ---SEEEEEET---------------------------------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS
T ss_pred ---CEEEEEEC---------------------------------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC
Confidence 36665332 2679999998774 566665 4569999999875
Q ss_pred -eEEEEe-CCeEEEEECCCCceee---EEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccC
Q 003221 204 -IVAVGL-ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (838)
Q Consensus 204 -iLaV~l-~~~I~IwD~~t~e~l~---tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~ 278 (838)
+|+++. ++.|++||+.+.+... .+..|..+ . ..++|.++.
T Consensus 118 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~-------------v-------~~~~~~p~~--------------- 162 (345)
T 3fm0_A 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-------------V-------KHVVWHPSQ--------------- 162 (345)
T ss_dssp SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------E-------EEEEECSSS---------------
T ss_pred CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------e-------EEEEECCCC---------------
Confidence 666655 6689999998765432 22222221 1 123332210
Q ss_pred CCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC
Q 003221 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (838)
Q Consensus 279 ~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s 358 (838)
.++ . ++..+|.|+|||+.+
T Consensus 163 -------------~~l--------------------------------------------~----s~s~d~~i~~w~~~~ 181 (345)
T 3fm0_A 163 -------------ELL--------------------------------------------A----SASYDDTVKLYREEE 181 (345)
T ss_dssp -------------SCE--------------------------------------------E----EEETTSCEEEEEEET
T ss_pred -------------CEE--------------------------------------------E----EEeCCCcEEEEEecC
Confidence 000 0 245689999999987
Q ss_pred Cc--EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003221 359 RA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (838)
Q Consensus 359 ~~--~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~s 436 (838)
++ ....+.+|..+|.+|+|+|+|++|||++.||+ |+|||+.... ...+...........++..+ .|.+...|++
T Consensus 182 ~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~ 257 (345)
T 3fm0_A 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPG--NEQGVACSGSDPSWKCICTL-SGFHSRTIYD 257 (345)
T ss_dssp TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTT--CTTCCCCC---CEEEEEEEE-CSSCSSCEEE
T ss_pred CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCC--CCccceeeccCCccceeEEe-cCCCCCcEEE
Confidence 75 45789999999999999999999999999876 9999973210 00000000001112344444 4555668999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 437 ICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 437 IaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
++|+|++..|++++.|++|+||++.+..
T Consensus 258 v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 258 IAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred EEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 9999999999999999999999987643
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.90 E-value=4.9e-21 Score=206.11 Aligned_cols=261 Identities=20% Similarity=0.201 Sum_probs=173.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CceeEEeeeccCcEEEEEEecCCCCCCCCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~------g~v~ells~hdg~V~~l~~lP~p~~~~~~d 124 (838)
..+|++.|..+.|.-.... ...+++|++|..++ ++|||+... +.....+..|.++|.++++.|+.
T Consensus 17 l~gH~~~V~~~~~~~s~~~-~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~------- 88 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKE-NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN------- 88 (343)
T ss_dssp EECCSSCEEEEEECCCSST-TCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-------
T ss_pred eccchhhhhheeeEEEeec-CCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-------
Confidence 4678899999988421110 11256777777655 999999642 23345678899999999999752
Q ss_pred CcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC
Q 003221 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR 203 (838)
Q Consensus 125 ~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~ 203 (838)
.+|+..+. +++|+|||+++++.+..+. +...|.+++++++
T Consensus 89 ------~~l~s~s~---------------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~ 129 (343)
T 2xzm_R 89 ------CFAISSSW---------------------------------DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129 (343)
T ss_dssp ------TEEEEEET---------------------------------TSEEEEEETTSSCEEEEEECCCSCEEEEEECSS
T ss_pred ------CEEEEEcC---------------------------------CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC
Confidence 35554221 3789999999999999886 4579999999875
Q ss_pred --eEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCC
Q 003221 204 --IVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (838)
Q Consensus 204 --iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~ 280 (838)
+|++ +.++.|++||+.. +....+...... ...+ ..++|.+.... ...+
T Consensus 130 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~-------------~~~v----~~~~~~~~~~~--------~~~~--- 180 (343)
T 2xzm_R 130 NRQILSAGAEREIKLWNILG-ECKFSSAEKENH-------------SDWV----SCVRYSPIMKS--------ANKV--- 180 (343)
T ss_dssp TTEEEEEETTSCEEEEESSS-CEEEECCTTTSC-------------SSCE----EEEEECCCCCS--------CSCC---
T ss_pred CCEEEEEcCCCEEEEEeccC-CceeeeecccCC-------------Ccee----eeeeecccccc--------cccc---
Confidence 5555 4567899999973 333322211000 0001 23344332100 0000
Q ss_pred CCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc
Q 003221 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (838)
Q Consensus 281 ~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~ 360 (838)
.| ....+ +.+..+|.|+||| ...+
T Consensus 181 ----------------------------------------~~-----------~~~~l----~s~~~d~~i~iwd-~~~~ 204 (343)
T 2xzm_R 181 ----------------------------------------QP-----------FAPYF----ASVGWDGRLKVWN-TNFQ 204 (343)
T ss_dssp ----------------------------------------CS-----------SCCEE----EEEETTSEEEEEE-TTTE
T ss_pred ----------------------------------------CC-----------CCCEE----EEEcCCCEEEEEc-CCCc
Confidence 00 00001 1356789999999 4567
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 440 (838)
....+.+|..+|.+++|+|+|++|||++.||+ |+|||+... + .....+..+ ..|.+++|+
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~------~----------~~~~~~~~~---~~v~~v~~s 264 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNL------T----------YPQREFDAG---STINQIAFN 264 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCC------S----------SCSEEEECS---SCEEEEEEC
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCC------c----------ccceeecCC---CcEEEEEEC
Confidence 77899999999999999999999999999775 999998421 1 122333222 359999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
||+++|++++ |++|+||++.....
T Consensus 265 p~~~~la~~~-d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 265 PKLQWVAVGT-DQGVKIFNLMTQSK 288 (343)
T ss_dssp SSSCEEEEEE-SSCEEEEESSSCCS
T ss_pred CCCCEEEEEC-CCCEEEEEeCCCCC
Confidence 9999987664 77899999976543
No 26
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.90 E-value=1.7e-21 Score=227.28 Aligned_cols=292 Identities=13% Similarity=0.116 Sum_probs=190.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLa 134 (838)
++.++.-+.|+. + ++.|+.|.++.++|||+. .+.....+.+|.++|.+++|.|++ .+||
T Consensus 17 ~~g~~~~~~~sp----d---g~~l~~~~~~~v~l~~~~-~~~~~~~~~~h~~~v~~~~~spdg-------------~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTP----A---GDKIQYCNGTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPSG-------------YYCA 75 (611)
T ss_dssp CTTCCCCCEECT----T---SSEEEEEETTEEEEEETT-CSSCCEEECCCSSCEEEEEECTTS-------------SEEE
T ss_pred ccCceeEEeeCC----C---CCEEEeCCCCEEEEecCC-CcccCeEecCCCCceEEEEECCCC-------------cEEE
Confidence 455555555643 2 568888888889999995 456777888999999999999863 3666
Q ss_pred EEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEeCCC--eEEEEe
Q 003221 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--IVAVGL 209 (838)
Q Consensus 135 vV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~--~V~tL~-f~s~V~sV~~s~~--iLaV~l 209 (838)
..+. +++|+|||+.+++ ...++. +...|.+|+|+++ +|+++.
T Consensus 76 sg~~---------------------------------d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~ 122 (611)
T 1nr0_A 76 SGDV---------------------------------HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 122 (611)
T ss_dssp EEET---------------------------------TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred EEeC---------------------------------CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEE
Confidence 5321 3789999997554 444554 4679999999986 666655
Q ss_pred CC-----eEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--c-EEEEeCC--CceeecCCCCCCcccCC
Q 003221 210 AT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASN--TLLLSNSGRLSPQNLTP 279 (838)
Q Consensus 210 ~~-----~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r-~LAys~~--~~~l~~~G~vs~q~l~~ 279 (838)
.+ .|++||. ++.+.++..|..+ ...++++| . .|+.++. .+.+|+....
T Consensus 123 ~~~~~~~~v~~wd~--~~~~~~l~gh~~~-------------v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~------- 180 (611)
T 1nr0_A 123 EGRERFGHVFLFDT--GTSNGNLTGQARA-------------MNSVDFKPSRPFRIISGSDDNTVAIFEGPPF------- 180 (611)
T ss_dssp CCSSCSEEEEETTT--CCBCBCCCCCSSC-------------EEEEEECSSSSCEEEEEETTSCEEEEETTTB-------
T ss_pred CCCCceeEEEEeeC--CCCcceecCCCCC-------------ceEEEECCCCCeEEEEEeCCCeEEEEECCCC-------
Confidence 43 5888884 4455555555442 45677776 2 4665542 4667763100
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~ 359 (838)
... +++.++. .......++++++.++ +++.||+|+|||+.++
T Consensus 181 ------------~~~----------------~~l~~H~------~~V~~v~fspdg~~la----s~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 181 ------------KFK----------------STFGEHT------KFVHSVRYNPDGSLFA----STGGDGTIVLYNGVDG 222 (611)
T ss_dssp ------------EEE----------------EEECCCS------SCEEEEEECTTSSEEE----EEETTSCEEEEETTTC
T ss_pred ------------eEe----------------eeecccc------CceEEEEECCCCCEEE----EEECCCcEEEEECCCC
Confidence 000 1111111 0111222333333333 4678999999999999
Q ss_pred cEEEEec-------cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCccc----CC---------------------
Q 003221 360 AIISQFK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----SG--------------------- 407 (838)
Q Consensus 360 ~~v~~~~-------aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~----~~--------------------- 407 (838)
+.+..+. +|..+|.+++|+|+|++|||++.|++ |+|||+...... .+
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 9888884 89999999999999999999999765 999998642100 00
Q ss_pred -CCCC-ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 408 -SGNH-KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 408 -~G~~-~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
.|.. ..+.. ....+ ....|+ ...|++++|+|||++|++++.|++|+||++....
T Consensus 302 ~d~~i~~~~~~-~~~~~-~~~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 302 ANGFINFVNPE-LGSID-QVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp TTCCEEEEETT-TTEEE-EEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEEeCC-CCCcc-eEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 0000 00000 00111 222454 4579999999999999999999999999997644
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.90 E-value=6e-21 Score=209.88 Aligned_cols=241 Identities=12% Similarity=0.141 Sum_probs=171.6
Q ss_pred EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEE
Q 003221 59 VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVA 137 (838)
Q Consensus 59 v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~ 137 (838)
|.-+.|.. .++.|++|..+| ++|||++ .+++...+..|.++|.++++.|+. .+|+..+
T Consensus 126 v~~v~~s~-------dg~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~p~~-------------~~l~s~s 184 (393)
T 1erj_A 126 IRSVCFSP-------DGKFLATGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSG-------------DKLVSGS 184 (393)
T ss_dssp EEEEEECT-------TSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTS-------------SEEEEEE
T ss_pred EEEEEECC-------CCCEEEEEcCCCeEEEEECC-CCcEEEEEccCCCCEEEEEEcCCC-------------CEEEEec
Confidence 55555543 245777777665 9999995 466777888999999999999852 2555432
Q ss_pred CCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCC---CeEEEEe-CCeE
Q 003221 138 GEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQI 213 (838)
Q Consensus 138 ~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~---~iLaV~l-~~~I 213 (838)
. +++|++||+++++.+..+.....|..+++++ ++|+++. ++.|
T Consensus 185 ~---------------------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 185 G---------------------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp T---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred C---------------------------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 1 3789999999999999999999999999986 3666655 6689
Q ss_pred EEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcc
Q 003221 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL 293 (838)
Q Consensus 214 ~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gsl 293 (838)
++||+.+++.+..+....... .+. ...+ ..|+|.++.
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~---~~h------~~~v----~~v~~~~~g------------------------------ 268 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESG---TGH------KDSV----YSVVFTRDG------------------------------ 268 (393)
T ss_dssp EEEETTTCCEEEEEC---------CCC------SSCE----EEEEECTTS------------------------------
T ss_pred EEEECCCCcEEEeecccccCC---CCC------CCCE----EEEEECCCC------------------------------
Confidence 999999988776653211100 000 0000 112332210
Q ss_pred eeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC------------cE
Q 003221 294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------AI 361 (838)
Q Consensus 294 va~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~------------~~ 361 (838)
+.+. ++..||.|+|||+.+. ..
T Consensus 269 ------------------------------------------~~l~----s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~ 302 (393)
T 1erj_A 269 ------------------------------------------QSVV----SGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302 (393)
T ss_dssp ------------------------------------------SEEE----EEETTSEEEEEEC---------------CE
T ss_pred ------------------------------------------CEEE----EEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence 0000 2456899999999753 34
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003221 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (838)
Q Consensus 362 v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 441 (838)
...+.+|...|.+++|+|+|.+|+|++.||+ |+|||+.. | ..+..+ +|+ ...|.+++|++
T Consensus 303 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~-------~----------~~~~~l-~~h-~~~v~~v~~~~ 362 (393)
T 1erj_A 303 EVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKS-------G----------NPLLML-QGH-RNSVISVAVAN 362 (393)
T ss_dssp EEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTT-------C----------CEEEEE-ECC-SSCEEEEEECS
T ss_pred eEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCC-------C----------eEEEEE-CCC-CCCEEEEEecC
Confidence 5678899999999999999999999999775 99999864 3 355666 354 35699999986
Q ss_pred ------CCCEEEEEeCCCeEEEEecCC
Q 003221 442 ------YSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 442 ------Dg~~Las~S~dGTVhIw~l~~ 462 (838)
|+++||+++.||+|+||++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 789999999999999999864
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.90 E-value=1.4e-21 Score=207.05 Aligned_cols=217 Identities=13% Similarity=0.195 Sum_probs=165.5
Q ss_pred eeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEE
Q 003221 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (838)
Q Consensus 97 v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~ 176 (838)
+..++..|.++|.+|+|.|+. ++|+..+. +++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~-------------~~l~s~~~---------------------------------dg~v~ 38 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTE-------------PWVLTTLY---------------------------------SGRVE 38 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSS-------------SEEEEEET---------------------------------TSEEE
T ss_pred eEEeecCCCCceEEEEECCCC-------------CEEEEEcC---------------------------------CCcEE
Confidence 567889999999999999862 46665321 37899
Q ss_pred EEECCCCeEEEEEeCC-CcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEE
Q 003221 177 FYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV 252 (838)
Q Consensus 177 IWDl~tg~~V~tL~f~-s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Al 252 (838)
+||+.+++.+..+..+ ..|.+++|+++ +|+++. ++.|++||+.+++++.++..|+.+ ...
T Consensus 39 lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-------------v~~--- 102 (304)
T 2ynn_A 39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRS--- 102 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEE---
T ss_pred EEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc-------------EEE---
Confidence 9999999999999764 68999999774 666655 568999999999998888776653 222
Q ss_pred cccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCC
Q 003221 253 GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN 332 (838)
Q Consensus 253 spr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n 332 (838)
|+|.++.. +++
T Consensus 103 ----~~~~~~~~----------------------------~l~------------------------------------- 113 (304)
T 2ynn_A 103 ----IAVHPTKP----------------------------YVL------------------------------------- 113 (304)
T ss_dssp ----EEECSSSS----------------------------EEE-------------------------------------
T ss_pred ----EEEcCCCC----------------------------EEE-------------------------------------
Confidence 33332110 000
Q ss_pred CccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCC
Q 003221 333 SVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (838)
Q Consensus 333 ~~~k~~~~~~~~g~~~G~V~VwDl~s~-~~v~~~~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~ 410 (838)
+++.||+|+|||+.++ .....+.+|..+|.+++|+| ++.+||||+.||+ |+|||+.. +
T Consensus 114 -----------sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~-v~iwd~~~-------~- 173 (304)
T 2ynn_A 114 -----------SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLGQ-------S- 173 (304)
T ss_dssp -----------EEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE-EEEEETTC-------S-
T ss_pred -----------EECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe-EEEEECCC-------C-
Confidence 2456899999999887 45678899999999999999 6899999999775 99999853 1
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCeEEEEecCCCCCccccccCCC
Q 003221 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 411 ~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp--Dg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
...+.+..+. ...|..++|+| |+++|++++.|++|+||++........+.+|..
T Consensus 174 ---------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~ 229 (304)
T 2ynn_A 174 ---------TPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (304)
T ss_dssp ---------SCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred ---------CccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence 2334454443 34688899986 889999999999999999987766667777754
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.9e-21 Score=205.34 Aligned_cols=263 Identities=12% Similarity=0.099 Sum_probs=177.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~-~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..+|++.|.-+.|+. + ++.|++|..+| ++|||++. .......+..|.++|.++++.|.. .
T Consensus 7 ~~~h~~~v~~~~~s~----~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~ 68 (379)
T 3jrp_A 7 ANAHNELIHDAVLDY----Y---GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 68 (379)
T ss_dssp EEECCCCEEEEEECS----S---SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----------G
T ss_pred ecCCcccEEEEEEcC----C---CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-----------C
Confidence 456889999999975 3 45777776655 99999963 234556677899999999998641 1
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEeCCC---
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~--~V~tL~-f~s~V~sV~~s~~--- 203 (838)
..+|+.++. +++|++||+++++ .+..+. +...|.+++++++
T Consensus 69 ~~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 69 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEecc---------------------------------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence 236655332 2679999999997 555554 4579999999875
Q ss_pred -eEEEE-eCCeEEEEECCCCceee--EEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCC
Q 003221 204 -IVAVG-LATQIYCFDALTLENKF--SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (838)
Q Consensus 204 -iLaV~-l~~~I~IwD~~t~e~l~--tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~ 279 (838)
+|+++ .++.|++||+.+.+... .+..+..+ ... +++.+..... . +..
T Consensus 116 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~~~-~-~~~------- 166 (379)
T 3jrp_A 116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNS-------ASWAPATIEE-D-GEH------- 166 (379)
T ss_dssp SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC-------------EEE-------EEECCCC----------------
T ss_pred CEEEEecCCCcEEEEecCCCCceeeEEecCCCCc-------------eEE-------EEEcCccccc-c-ccc-------
Confidence 55554 46789999999875433 22233321 112 3333211000 0 000
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~ 359 (838)
.. .+....+. .+..+|.|+|||+.++
T Consensus 167 -----~~---------------------------------------------~~~~~~l~----~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 167 -----NG---------------------------------------------TKESRKFV----TGGADNLVKIWKYNSD 192 (379)
T ss_dssp -----------------------------------------------------CTTCEEE----EEETTSCEEEEEEETT
T ss_pred -----cC---------------------------------------------CCCCCEEE----EEeCCCeEEEEEecCC
Confidence 00 00001111 3456899999999865
Q ss_pred c----EEEEeccCCCCeEEEEECCC---CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-ccccc
Q 003221 360 A----IISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITS 431 (838)
Q Consensus 360 ~----~v~~~~aH~spIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-RG~t~ 431 (838)
+ .+..+.+|..+|.+++|+|+ |.+||+++.||. |+|||+... . ......+. ...+.
T Consensus 193 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~~-------~--------~~~~~~~~~~~~~~ 256 (379)
T 3jrp_A 193 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNE-------Q--------GPWKKTLLKEEKFP 256 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESST-------T--------SCCEEEESSSSCCS
T ss_pred CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCCC-------C--------ccceeeeeccccCC
Confidence 4 55788899999999999999 999999999886 999999641 0 01122222 22244
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 432 a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
..|.+++|+||+++|++++.||+|+||++...+
T Consensus 257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 257 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 579999999999999999999999999998643
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.7e-21 Score=210.00 Aligned_cols=290 Identities=13% Similarity=0.111 Sum_probs=192.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLL 133 (838)
+++.|..+.|.. + ++.|++|..+| ++|||. .+.....+..|.++|.++++.|+. .+|
T Consensus 107 ~~~~v~~~~~s~----~---~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~-------------~~l 164 (425)
T 1r5m_A 107 TTNQVTCLAWSH----D---GNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDG-------------THI 164 (425)
T ss_dssp -CBCEEEEEECT----T---SSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTS-------------SEE
T ss_pred CCCceEEEEEcC----C---CCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCC-------------CEE
Confidence 455788887765 2 45777777665 999994 466777788899999999999752 355
Q ss_pred EEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCc----------------EEE
Q 003221 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSS----------------VCM 197 (838)
Q Consensus 134 avV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~----------------V~s 197 (838)
++++. ++.|++||+++++.+..+..... |.+
T Consensus 165 ~~~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (425)
T 1r5m_A 165 ISMDV---------------------------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211 (425)
T ss_dssp EEEET---------------------------------TCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred EEEec---------------------------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence 54331 26799999999999999876543 888
Q ss_pred EEeCCC-e-EEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCC--CceeecCCC
Q 003221 198 VRCSPR-I-VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGR 271 (838)
Q Consensus 198 V~~s~~-i-LaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~--~~~l~~~G~ 271 (838)
+.++++ . ++.+.++.|++||+.+++.+..+..+..+ ...+++++ ++|+.++. .+.+|+...
T Consensus 212 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP-------------ISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC-------------EEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc-------------eEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 888765 4 44455678999999999888777655443 34567765 67776543 466777421
Q ss_pred CC-CcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCce
Q 003221 272 LS-PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350 (838)
Q Consensus 272 vs-~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~ 350 (838)
.. ...+.. + ......+.+++.. .+. .+..+|.
T Consensus 279 ~~~~~~~~~------------------------------------~------~~~i~~~~~~~~~-~l~----~~~~d~~ 311 (425)
T 1r5m_A 279 GNSQNCFYG------------------------------------H------SQSIVSASWVGDD-KVI----SCSMDGS 311 (425)
T ss_dssp BSCSEEECC------------------------------------C------SSCEEEEEEETTT-EEE----EEETTSE
T ss_pred CccceEecC------------------------------------C------CccEEEEEECCCC-EEE----EEeCCCc
Confidence 10 000000 0 0000001111111 111 3567899
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCccc--CCCCCCccccCC-cceEEEEEec
Q 003221 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNS-SHVHLYKLHR 427 (838)
Q Consensus 351 V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~--~~~G~~~~~~~~-~~~~l~~L~R 427 (838)
|+|||+.+++.+..+..|..+|.+++|+|+|++||+++.+|. |+|||+...... ...+.....+.. ....+..+ +
T Consensus 312 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 389 (425)
T 1r5m_A 312 VRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-Q 389 (425)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEE-C
T ss_pred EEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhh-c
Confidence 999999999999999999999999999999999999999776 999999542000 000000000000 00144555 3
Q ss_pred ccccc-cEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 428 GITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 428 G~t~a-~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
++... .|.+++|+||+++|++++.||+|+||+++
T Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 390 SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 44333 79999999999999999999999999985
No 31
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.89 E-value=1.2e-20 Score=208.70 Aligned_cols=268 Identities=15% Similarity=0.145 Sum_probs=185.2
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEee--eccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells--~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~ 152 (838)
.++|++|.++.++|||++ ++++.+++. .|.+.|.+|+|.|+. .+||+.+.
T Consensus 116 ~n~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspdg-------------~~lasgs~-------------- 167 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGTS-------------- 167 (420)
T ss_dssp TSEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTS-------------SEEEEEET--------------
T ss_pred CCEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCCC-------------CEEEEEEC--------------
Confidence 569999999999999995 577877775 456789999999853 36665321
Q ss_pred CCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCCeEEEEe-CCeEEEEECCCCce-eeEEee
Q 003221 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLEN-KFSVLT 229 (838)
Q Consensus 153 ~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~-l~tL~t 229 (838)
+++|+|||+++++.+..+.. ...|.++.+++++|+++. +..|++||..+... ..++..
T Consensus 168 -------------------Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 168 -------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp -------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred -------------------CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence 26899999999999999875 468999999999888876 45799999887543 444555
Q ss_pred cCCcccCCCCccccccccceeEEcc--cEEEEeC--CCceeecCC--CCCCcccCCCCCCCCCCCCCCcceeeeehhhhh
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSG--RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~--~~~~l~~~G--~vs~q~l~~~~~s~stsps~gslva~~A~ds~k 303 (838)
|... ...+.+.+ ++|+... ..+.+|+.. ......+.
T Consensus 229 h~~~-------------~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~------------------------- 270 (420)
T 4gga_A 229 HSQE-------------VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ------------------------- 270 (420)
T ss_dssp CSSC-------------EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE-------------------------
T ss_pred cccc-------------eeeeeecCCCCeeeeeeccccceEEeeccccccceeee-------------------------
Confidence 5442 22344444 6666544 345667641 11000000
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCc-cccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC
Q 003221 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSV-WKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT 382 (838)
Q Consensus 304 ~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~-~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt 382 (838)
.+..+ .+......+.+. ...+.+ ..+..||+|+|||+.+++.+..+..| ..+.++.|+|++.
T Consensus 271 --------~~~~~------~~~V~~~~~~p~~~~~la~--~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~ 333 (420)
T 4gga_A 271 --------TFTQH------QGAVKAVAWCPWQSNVLAT--GGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYK 333 (420)
T ss_dssp --------EECCC------SSCEEEEEECTTCTTEEEE--EECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTT
T ss_pred --------eeccc------CCceeeeeeCCCcccEEEE--EeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCC
Confidence 00000 000000011110 011111 13568999999999999998888866 5788999999999
Q ss_pred EEEEEe--cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 383 LLVTAS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 383 lLATAS--~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
.|++++ .||+ |+|||+.. + .++.+| +|+ ...|++|+|||||++||+++.||||+||++
T Consensus 334 ~lv~~sg~~d~~-I~iwd~~~-------~----------~~v~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 334 ELISGHGFAQNQ-LVIWKYPT-------M----------AKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEEEEECTTTCC-EEEEETTT-------C----------CEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred eEEEEEecCCCE-EEEEECCC-------C----------cEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 999876 5555 99999853 3 577777 464 457999999999999999999999999999
Q ss_pred CCCC
Q 003221 461 SPFG 464 (838)
Q Consensus 461 ~~~g 464 (838)
....
T Consensus 394 ~~~~ 397 (420)
T 4gga_A 394 FELD 397 (420)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7644
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-20 Score=198.75 Aligned_cols=259 Identities=11% Similarity=0.076 Sum_probs=187.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..+|++.|.-+.|.. + ++.|++|..+| ++|||+. .+.....+..|.++|.++++.|+.
T Consensus 28 l~~h~~~v~~~~~s~----~---~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~------------- 86 (369)
T 3zwl_B 28 LTGHERPLTQVKYNK----E---GDLLFSCSKDSSASVWYSL-NGERLGTLDGHTGTIWSIDVDCFT------------- 86 (369)
T ss_dssp EECCSSCEEEEEECT----T---SCEEEEEESSSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred EEEeeceEEEEEEcC----C---CCEEEEEeCCCEEEEEeCC-CchhhhhhhhcCCcEEEEEEcCCC-------------
Confidence 456888899999865 3 45677776655 9999995 466777888899999999999752
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVG 208 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~ 208 (838)
.+|++++. +++|++||+++++.+..+.+...|.+++++++ +|+++
T Consensus 87 ~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 87 KYCVTGSA---------------------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp SEEEEEET---------------------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEe
Confidence 35654331 27899999999999999999999999999885 66665
Q ss_pred eC------CeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEE-----cccEEEEeCCCceeecCCCCCCccc
Q 003221 209 LA------TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV-----GPRWLAYASNTLLLSNSGRLSPQNL 277 (838)
Q Consensus 209 l~------~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Al-----spr~LAys~~~~~l~~~G~vs~q~l 277 (838)
.. +.|++||+.+.+....+....... ...+.. ....+++.+
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~---------------- 185 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEP------------IHKIITHEGLDAATVAGWST---------------- 185 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSC------------SEEEECCTTCCCEEEEEECG----------------
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccce------------eeeccCCcCccceeEEEEcC----------------
Confidence 54 689999988765444333211100 000000 000111111
Q ss_pred CCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC
Q 003221 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (838)
Q Consensus 278 ~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~ 357 (838)
..+.+. .+..+|.|.+||+.
T Consensus 186 --------------------------------------------------------~~~~l~----~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 186 --------------------------------------------------------KGKYII----AGHKDGKISKYDVS 205 (369)
T ss_dssp --------------------------------------------------------GGCEEE----EEETTSEEEEEETT
T ss_pred --------------------------------------------------------CCCEEE----EEcCCCEEEEEECC
Confidence 111111 24568999999999
Q ss_pred C-CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003221 358 T-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (838)
Q Consensus 358 s-~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~s 436 (838)
+ .+.+..+..|..+|.+++|+|+|.+|++++.+|. |+|||+.. + ..+..+. ....+.+
T Consensus 206 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~-------~----------~~~~~~~---~~~~~~~ 264 (369)
T 3zwl_B 206 NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVST-------L----------QVLKKYE---TDCPLNT 264 (369)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTT-------C----------CEEEEEE---CSSCEEE
T ss_pred CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCC-------C----------ceeeeec---CCCCcee
Confidence 8 7888999999999999999999999999999775 99999964 2 3555554 3357999
Q ss_pred EEEccCCCEEEEEeCCC--------------eEEEEecCCCCCccccccCC
Q 003221 437 ICFSHYSQWIAIVSSKG--------------TCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 437 IaFSpDg~~Las~S~dG--------------TVhIw~l~~~gg~~~~~~H~ 473 (838)
++|+|++++|++++.++ ++++|++........+..|.
T Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 315 (369)
T 3zwl_B 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315 (369)
T ss_dssp EEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS
T ss_pred EEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc
Confidence 99999999999999999 78888887665555555553
No 33
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.89 E-value=5.8e-22 Score=211.54 Aligned_cols=266 Identities=16% Similarity=0.130 Sum_probs=168.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g-~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..+|++.|.-+.|+. + ++.|++|..++ ++|||+.... .+...+..|.++|.+|++.|.. .
T Consensus 9 ~~~H~~~V~~v~~s~----~---g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~---------~-- 70 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDY----Y---GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM---------Y-- 70 (316)
T ss_dssp -----CCEEEEEECG----G---GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG---------G--
T ss_pred cccccCeEEEeeEcC----C---CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC---------C--
Confidence 457899999999975 3 45677776655 9999996432 1345678899999999997521 1
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEeCCC---
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~--~V~tL~-f~s~V~sV~~s~~--- 203 (838)
..+|+..+. +++|+|||+++++ .+..+. +...|.+|+++++
T Consensus 71 ~~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g 117 (316)
T 3bg1_A 71 GNILASCSY---------------------------------DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG 117 (316)
T ss_dssp SSCEEEEET---------------------------------TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC
T ss_pred CCEEEEEEC---------------------------------CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC
Confidence 125654332 2789999999874 555554 4568999999874
Q ss_pred -eEEEEe-CCeEEEEECCCCceeeEEe---ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccC
Q 003221 204 -IVAVGL-ATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (838)
Q Consensus 204 -iLaV~l-~~~I~IwD~~t~e~l~tL~---t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~ 278 (838)
+|+++. ++.|++||+.+........ .|..+ ...++ +.++... |
T Consensus 118 ~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~-------------v~~~~-------~~~~~~~----~-------- 165 (316)
T 3bg1_A 118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG-------------CNAVS-------WAPAVVP----G-------- 165 (316)
T ss_dssp SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC-------------BCCCE-------ECCCCCC-------------
T ss_pred cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC-------------cceEE-------EccccCC----c--------
Confidence 666665 5689999998764221111 11111 12222 2221000 0
Q ss_pred CCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC
Q 003221 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (838)
Q Consensus 279 ~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s 358 (838)
.++.. +.+. ..+ ..+.+ +++..||.|+|||+..
T Consensus 166 -------------~~~~~-------------------------~~~~----~~~-~~~~l----~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 166 -------------SLIDH-------------------------PSGQ----KPN-YIKRF----ASGGCDNLIKLWKEEE 198 (316)
T ss_dssp -------------------------------------------CCSC----CCC-CCCBE----ECCBTTSBCCEEEECT
T ss_pred -------------ccccc-------------------------cccc----Ccc-ccceE----EEecCCCeEEEEEeCC
Confidence 00000 0000 000 00111 1467899999999975
Q ss_pred C---cEEEEeccCCCCeEEEEECCCC----CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003221 359 R---AIISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (838)
Q Consensus 359 ~---~~v~~~~aH~spIsaLaFSPdG----tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~ 431 (838)
. +.+..|.+|..+|.+++|+|++ .+|||+|.||+ |+||++.... .+. .....+ .+ +.
T Consensus 199 ~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v~iw~~~~~~----~~~---------~~~~~~-~~-~~ 262 (316)
T 3bg1_A 199 DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDAS----SNT---------WSPKLL-HK-FN 262 (316)
T ss_dssp TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-EEEEECSSTT----CCC---------CBCCEE-EE-CS
T ss_pred CCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-EEEEEccCcc----ccc---------hhhhhh-hc-CC
Confidence 4 4677899999999999999997 89999999775 9999985310 000 011111 22 24
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 432 a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
..|++++|+||+++||+++.||+|+||++...
T Consensus 263 ~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 263 DVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp SCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 57999999999999999999999999998644
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.89 E-value=2.2e-20 Score=195.26 Aligned_cols=273 Identities=12% Similarity=0.054 Sum_probs=184.3
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcee--EEee--eccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN--ELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~--ells--~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
.+.+.|..+.|.. .+++|++|.++.++|||++...... ..+. .|.++|.++++.|+.
T Consensus 49 ~h~~~v~~~~~~~-------~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------ 109 (337)
T 1gxr_A 49 NHGEVVCAVTISN-------PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------ 109 (337)
T ss_dssp CCSSCCCEEEECS-------SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS------------
T ss_pred cCCCceEEEEEec-------CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC------------
Confidence 3555666666643 2567888876679999997543222 2222 678899999999752
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCcEEEEEeCCC--e
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSPR--I 204 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~--~V~tL~f-~s~V~sV~~s~~--i 204 (838)
.+|++.+. .++|++||+++++ .+..+.. ...|.+++++++ +
T Consensus 110 -~~l~~~~~---------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 110 -CTLIVGGE---------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155 (337)
T ss_dssp -SEEEEEES---------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred -CEEEEEcC---------------------------------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE
Confidence 25554321 2689999999987 4445543 468999999875 6
Q ss_pred EEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCC--CceeecCCCCCCcccCC
Q 003221 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTP 279 (838)
Q Consensus 205 LaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~--~~~l~~~G~vs~q~l~~ 279 (838)
|+++. ++.|++||+.+++....+..+..+ ...+++++ ++|+..+. .+.+|+....
T Consensus 156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------- 215 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTVRSWDLREG------- 215 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTTT-------
T ss_pred EEEEeCCCcEEEEeCCCCceeeeeecccCc-------------eEEEEECCCCCEEEEEecCCcEEEEECCCC-------
Confidence 66655 568999999999888777655442 34567765 56665543 4556764110
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~ 359 (838)
..+..+. .........+++..+.+. .+..+|.|++||+.++
T Consensus 216 ------------~~~~~~~-----------------------~~~~v~~~~~s~~~~~l~----~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 216 ------------RQLQQHD-----------------------FTSQIFSLGYCPTGEWLA----VGMESSNVEVLHVNKP 256 (337)
T ss_dssp ------------EEEEEEE-----------------------CSSCEEEEEECTTSSEEE----EEETTSCEEEEETTSS
T ss_pred ------------ceEeeec-----------------------CCCceEEEEECCCCCEEE----EEcCCCcEEEEECCCC
Confidence 0000000 000000111112222222 3456899999999987
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003221 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (838)
Q Consensus 360 ~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF 439 (838)
+. ..+..|..+|.+++|+|+|++|++++.+|. |++||+.. + ..+..+. +...|.+++|
T Consensus 257 ~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~-------~----------~~~~~~~---~~~~v~~~~~ 314 (337)
T 1gxr_A 257 DK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPY-------G----------ASIFQSK---ESSSVLSCDI 314 (337)
T ss_dssp CE-EEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTT-------C----------CEEEEEE---CSSCEEEEEE
T ss_pred Ce-EEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCC-------C----------eEEEEec---CCCcEEEEEE
Confidence 75 578899999999999999999999999765 99999964 2 2443332 3457999999
Q ss_pred ccCCCEEEEEeCCCeEEEEec
Q 003221 440 SHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 440 SpDg~~Las~S~dGTVhIw~l 460 (838)
+||+++|++++.||+|+||++
T Consensus 315 s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 315 SVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999997
No 35
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.89 E-value=2.2e-20 Score=194.13 Aligned_cols=273 Identities=11% Similarity=0.090 Sum_probs=177.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---ceeEEeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g---~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~ 127 (838)
..+|++.|.-+.|.. + ++.|++|..+| ++|||+.... .+...+..|.++|.++++.|..
T Consensus 7 ~~gH~~~v~~~~~~~----~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------- 69 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDF----Y---GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE---------- 69 (351)
T ss_dssp ECCCSSCEEEEEECS----S---SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG----------
T ss_pred CcccccceeEEEEcC----C---CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC----------
Confidence 357889999999976 3 45677777665 9999997533 2445567799999999999730
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCC---------eEEEEEe-CCCcEEE
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---------CYEHVLR-FRSSVCM 197 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg---------~~V~tL~-f~s~V~s 197 (838)
...+|++.+. +++|++||++++ +.+..+. +...|.+
T Consensus 70 -d~~~l~s~~~---------------------------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 115 (351)
T 3f3f_A 70 -YGRIIASASY---------------------------------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115 (351)
T ss_dssp -GCSEEEEEET---------------------------------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEE
T ss_pred -CCCEEEEEcC---------------------------------CCeEEEEecCCCcccccccCcceeeeecccCCceeE
Confidence 1236655332 267999999987 5566765 4579999
Q ss_pred EEeCCC----eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEc-------ccEEEEeCCCce
Q 003221 198 VRCSPR----IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG-------PRWLAYASNTLL 265 (838)
Q Consensus 198 V~~s~~----iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Als-------pr~LAys~~~~~ 265 (838)
++++++ +|+++. ++.|++||+.+++.+..+...... ..+.+. ...+++.+..
T Consensus 116 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~p~~-- 179 (351)
T 3f3f_A 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--------------KVLSIPPANHLQSDFCLSWCPSR-- 179 (351)
T ss_dssp EEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--------------ESCSCCCSSCSCCCEEEEECCCS--
T ss_pred EEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--------------cccccccCCcccceeEEEeccCC--
Confidence 999864 566554 678999999988765433210000 000000 0111111100
Q ss_pred eecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCcccccccccccc
Q 003221 266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM 345 (838)
Q Consensus 266 l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g 345 (838)
++ ...+. .+
T Consensus 180 -----------------------------------------------------------------~~--~~~l~----~~ 188 (351)
T 3f3f_A 180 -----------------------------------------------------------------FS--PEKLA----VS 188 (351)
T ss_dssp -----------------------------------------------------------------SS--CCEEE----EE
T ss_pred -----------------------------------------------------------------CC--CcEEE----Ee
Confidence 00 00011 24
Q ss_pred CCCceEEEEECCCCcE--EEEeccCCCCeEEEEECCCC----CEEEEEecCCCEEEEEecCCCcccC-------------
Q 003221 346 DNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRS------------- 406 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~--v~~~~aH~spIsaLaFSPdG----tlLATAS~dGt~IrVwdi~p~~~~~------------- 406 (838)
..+|.+.+|+...++. +..+.+|..+|.+++|+|+| ++|||++.||+ |+|||+.......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~ 267 (351)
T 3f3f_A 189 ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFD 267 (351)
T ss_dssp ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC----------------
T ss_pred cCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccC
Confidence 5678888888877764 77889999999999999998 89999999886 9999986421000
Q ss_pred --------CCCCC-------ccccC-CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 407 --------GSGNH-------KYDWN-SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 407 --------~~G~~-------~~~~~-~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
..+.. ..-+. .....+..+ ++ +...|++++|+||+++|++++.||+|+||+++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 268 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DD-HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -----------------------CCSEEEEEEEEE-CT-TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred CCcccccccccccccccceeeeecccccccEEEEE-ec-ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 00000 00000 011233444 34 345799999999999999999999999999987543
No 36
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.89 E-value=2.1e-20 Score=203.25 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=165.7
Q ss_pred CeEEEEEecCc-EEEEEccCCC-----ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDAS-----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g-----~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~ 148 (838)
+..|++|..++ ++||++.... .....+..|.+.|..+.+.|+. ..|+..+.
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~t~s~---------- 174 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-------------MQILTASG---------- 174 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-------------SEEEEEET----------
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-------------CEEEEEeC----------
Confidence 55677776665 9999985321 2345667899999999999752 24554332
Q ss_pred CCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCC----CeEEEEe-CCeEEEEECCCCc
Q 003221 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE 222 (838)
Q Consensus 149 ~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~----~iLaV~l-~~~I~IwD~~t~e 222 (838)
+++|++||+++++.+.++.. ...|.++.+++ ++|+++. ++.|++||+.+++
T Consensus 175 -----------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 175 -----------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp -----------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC
T ss_pred -----------------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 37899999999999999975 46899988865 3666654 6789999999999
Q ss_pred eeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhh
Q 003221 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (838)
Q Consensus 223 ~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~ 302 (838)
++.++..|..+ ...+ +|.++. .+++
T Consensus 232 ~~~~~~~h~~~-------------v~~v-------~~~p~~----------------------------~~l~------- 256 (354)
T 2pbi_B 232 CVQAFETHESD-------------VNSV-------RYYPSG----------------------------DAFA------- 256 (354)
T ss_dssp EEEEECCCSSC-------------EEEE-------EECTTS----------------------------SEEE-------
T ss_pred EEEEecCCCCC-------------eEEE-------EEeCCC----------------------------CEEE-------
Confidence 88877665542 2223 332210 0000
Q ss_pred hhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC--CCCeEEEEECCC
Q 003221 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDPS 380 (838)
Q Consensus 303 k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH--~spIsaLaFSPd 380 (838)
++..||+|+|||+..++.+..+..| ...+.+++|+|+
T Consensus 257 -----------------------------------------s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 257 -----------------------------------------SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS 295 (354)
T ss_dssp -----------------------------------------EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred -----------------------------------------EEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC
Confidence 2456899999999998877777644 457999999999
Q ss_pred CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 381 GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
|++|++++.||+ |+|||+.. | ..+..+ .|+ ...|.+|+|||||++||+++.||+|+||+
T Consensus 296 g~~l~~g~~d~~-i~vwd~~~-------~----------~~~~~l-~~h-~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 296 GRLLFAGYNDYT-INVWDVLK-------G----------SRVSIL-FGH-ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSEEEEEETTSC-EEEEETTT-------C----------SEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEECCCc-EEEEECCC-------C----------ceEEEE-ECC-CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999776 99999954 3 355555 354 45799999999999999999999999995
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-20 Score=201.37 Aligned_cols=285 Identities=12% Similarity=0.095 Sum_probs=176.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC-ceeEEe-ee-ccCcEEEEEEecCCCCCCCCCCcc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS-NFNELV-SK-RDGPVSFLQMQPFPVKDDGCEGFR 127 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g-~v~ell-s~-hdg~V~~l~~lP~p~~~~~~d~F~ 127 (838)
..++++.|.-+.|+. . +|++|..+ .++|||+.... .+...+ .. |.++|.+|++.|+.
T Consensus 10 ~~~h~~~v~~~~~s~--------~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---------- 70 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQ--------G-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT---------- 70 (330)
T ss_dssp EECCSSCEEEEEEET--------T-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS----------
T ss_pred eccCCCceeeeccCC--------C-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC----------
Confidence 356788888888864 2 66666665 59999996422 233444 33 88999999999852
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCC-------CeEEEEEe-CCCcEEEEE
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-------HCYEHVLR-FRSSVCMVR 199 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~t-------g~~V~tL~-f~s~V~sV~ 199 (838)
.+||..+. +++|+|||+.. .+.+..+. +...|.+++
T Consensus 71 ---~~las~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 114 (330)
T 2hes_X 71 ---SLLAAGSF---------------------------------DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114 (330)
T ss_dssp ---SEEEEEET---------------------------------TSCEEEEEC-------CCCEEEEEEC----CEEEEE
T ss_pred ---CEEEEEeC---------------------------------CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEE
Confidence 36665332 26899999853 45666665 456999999
Q ss_pred eCCC--eEEEEe-CCeEEEEECCCC----ceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeC--CCceeec
Q 003221 200 CSPR--IVAVGL-ATQIYCFDALTL----ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSN 268 (838)
Q Consensus 200 ~s~~--iLaV~l-~~~I~IwD~~t~----e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~--~~~~l~~ 268 (838)
|+++ +|+++. ++.|++||+.+. +++.++..|..+ ...++++| ++|+.++ ..+.+|+
T Consensus 115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~v~~~p~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-------------VKHVIWHPSEALLASSSYDDTVRIWK 181 (330)
T ss_dssp ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC-------------EEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc-------------eEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 9875 677655 668999999532 344555555442 44567766 6777654 3466786
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCC
Q 003221 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (838)
Q Consensus 269 ~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~ 348 (838)
.-....+ .+ +++.++.... ....++++.....+ .++..|
T Consensus 182 ~~~~~~~-----------------~~----------------~~~~~h~~~v----~~~~~~~~~~~~~l----~s~s~D 220 (330)
T 2hes_X 182 DYDDDWE-----------------CV----------------AVLNGHEGTV----WSSDFDKTEGVFRL----CSGSDD 220 (330)
T ss_dssp EETTEEE-----------------EE----------------EEECCCSSCE----EEEEECCSSSSCEE----EEEETT
T ss_pred CCCCCee-----------------EE----------------EEccCCCCcE----EEEEecCCCCeeEE----EEEeCC
Confidence 3100000 00 0111110000 00111121111111 146789
Q ss_pred ceEEEEECCCC--------cEEEEecc-CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 349 GIVVVKDFVTR--------AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 349 G~V~VwDl~s~--------~~v~~~~a-H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
|+|+|||+.++ .....+.. |..+|.+++|++++ +||+++.||+ |+|||+.. |. .
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~-------~~--------~ 283 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVD-------GE--------W 283 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEET-------TE--------E
T ss_pred CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCC-------Cc--------e
Confidence 99999999764 34556665 99999999999776 7999999876 99999853 20 1
Q ss_pred eEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCeEEEEecCC
Q 003221 420 VHLYKLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSp--Dg~~Las~S~dGTVhIw~l~~ 462 (838)
..+..+..++....|.+++|+| |+++||+++.||+|+||+++.
T Consensus 284 ~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 284 KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2233333454433799999999 799999999999999999864
No 38
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.88 E-value=1.2e-19 Score=190.78 Aligned_cols=264 Identities=11% Similarity=0.106 Sum_probs=173.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCc----eeEEeeeccCcEEEEEEecCCCCCCCCCCc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASN----FNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~----v~ells~hdg~V~~l~~lP~p~~~~~~d~F 126 (838)
..+|++.|.-+.|.. + .+++|++|..+ .++|||+..... ....+..|.++|.++.+.|+.
T Consensus 34 L~GH~~~V~~v~~sp----~--~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--------- 98 (340)
T 4aow_A 34 LKGHNGWVTQIATTP----Q--FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--------- 98 (340)
T ss_dssp ECCCSSCEEEEEECT----T--CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS---------
T ss_pred ECCccCCEEEEEEeC----C--CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC---------
Confidence 568999999999964 1 13567766655 599999964322 345667889999999999753
Q ss_pred ccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC--
Q 003221 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR-- 203 (838)
Q Consensus 127 ~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~-- 203 (838)
.+|+..+. ++.|++|+...+......... ..+..+.+.++
T Consensus 99 ----~~l~s~~~---------------------------------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
T 4aow_A 99 ----QFALSGSW---------------------------------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141 (340)
T ss_dssp ----SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred ----CEEEEEcc---------------------------------cccceEEeecccceeeeecCCCCceeEEEEeecCc
Confidence 25554321 378999999999888777654 56677777653
Q ss_pred eEEEE-eCCeEEEEECCCCceeeEEe-ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCC
Q 003221 204 IVAVG-LATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (838)
Q Consensus 204 iLaV~-l~~~I~IwD~~t~e~l~tL~-t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~ 281 (838)
+|+++ .++.+++||+.......... .+... . ..+++..+.
T Consensus 142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~-------------v-------~~~~~~~~~------------------ 183 (340)
T 4aow_A 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW-------------V-------SCVRFSPNS------------------ 183 (340)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSSCSSC-------------E-------EEEEECSCS------------------
T ss_pred cceeecCCCeEEEEEeCCCceEEEEeccccCc-------------c-------cceEEccCC------------------
Confidence 55554 46789999987654322111 11110 1 112222210
Q ss_pred CCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE
Q 003221 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (838)
Q Consensus 282 ~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~ 361 (838)
...++ .++..++.|++||+.+++.
T Consensus 184 --------~~~~~------------------------------------------------~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 184 --------SNPII------------------------------------------------VSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp --------SSCEE------------------------------------------------EEEETTSCEEEEETTTTEE
T ss_pred --------CCcEE------------------------------------------------EEEcCCCEEEEEECCCCce
Confidence 00000 0245688999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCccc--------------CCCCCC---c-------cccCC
Q 003221 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--------------SGSGNH---K-------YDWNS 417 (838)
Q Consensus 362 v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~--------------~~~G~~---~-------~~~~~ 417 (838)
+..+.+|..+|.+|+|+|+|++||||+.||+ |+|||+...... +..+.. + ++..
T Consensus 208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~- 285 (340)
T 4aow_A 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE- 285 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETT-
T ss_pred eeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECC-
Confidence 9999999999999999999999999999775 999998642100 000000 0 0000
Q ss_pred cceEEEEEec-------ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 418 SHVHLYKLHR-------GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 418 ~~~~l~~L~R-------G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
....+.++.. ..+...|.+|+|+|||++|++++.||+|+||++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp TTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 0011222211 113446999999999999999999999999999763
No 39
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.88 E-value=1.5e-19 Score=188.19 Aligned_cols=266 Identities=14% Similarity=0.118 Sum_probs=179.4
Q ss_pred eEEEEEecCcEEEEEccCCCceeEEee--eccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 76 QVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 76 ~vL~lG~~~G~qVWdv~~~g~v~ells--~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
++|++|.++.++|||++ ++++.+++. .|.+.|.+|++.|+. .+||..+.
T Consensus 37 ~~lAvg~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~~~-------------~~l~sgs~--------------- 87 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGTS--------------- 87 (318)
T ss_dssp SEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTS-------------SEEEEEET---------------
T ss_pred CEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECCCC-------------CEEEEEEC---------------
Confidence 58999999999999995 577777765 456789999999752 36654221
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCCeEEEEeC-CeEEEEECCCCce-eeEEeec
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-TQIYCFDALTLEN-KFSVLTY 230 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~iLaV~l~-~~I~IwD~~t~e~-l~tL~t~ 230 (838)
+++|++||+++++.+..+..+ ..+.++..++++|+++.. ..+++|+..+... +.++..|
T Consensus 88 ------------------Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 88 ------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp ------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred ------------------CCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence 378999999999999999765 578899999998888765 5688999887644 3444444
Q ss_pred CCcccCCCCccccccccceeEEcc--cEEEEeC--CCceeecCCCCC--CcccCCCCCCCCCCCCCCcceeeeehhhhhh
Q 003221 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLS--PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (838)
Q Consensus 231 p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~--~~~~l~~~G~vs--~q~l~~~~~s~stsps~gslva~~A~ds~k~ 304 (838)
... ...+++.+ ++|+.+. ..+.+|+..... ...+.... ...+. +
T Consensus 150 ~~~-------------~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~-v---------- 199 (318)
T 4ggc_A 150 SQE-------------VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT------QHQGA-V---------- 199 (318)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC------CCCSC-E----------
T ss_pred cCc-------------eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec------ccCCc-e----------
Confidence 432 22344443 5666543 346678742110 00000000 00000 0
Q ss_pred hhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 003221 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 384 (838)
Q Consensus 305 la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlL 384 (838)
.. ....+.. .... ....+..+++|+|||......... ..|..++..++|+|++..|
T Consensus 200 ---------~~-----------~~~~~~~-~~~~--~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 200 ---------KA-----------VAWCPWQ-SNVL--ATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp ---------EE-----------EEECTTS-TTEE--EEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEE
T ss_pred ---------EE-----------EEecCCC-CcEE--EEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccce
Confidence 00 0000000 0000 111456789999999998776544 4577889999999999999
Q ss_pred EEEe--cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 385 VTAS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 385 ATAS--~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
++++ .||+ |+|||+.. + +.+.+| +|+ ...|++|+|||||++||++|.||+|+||++..
T Consensus 256 ~~~sg~~d~~-i~iwd~~~-------~----------~~~~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 256 ISGHGFAQNQ-LVIWKYPT-------M----------AKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEECTTTCC-EEEEETTT-------C----------CEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEEcCCCE-EEEEECCC-------C----------cEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 8876 5555 99999954 3 477777 464 45799999999999999999999999999864
No 40
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.88 E-value=1.1e-20 Score=214.94 Aligned_cols=316 Identities=18% Similarity=0.171 Sum_probs=198.3
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLL 133 (838)
+...|.-+.|.. + ++.|++|..+| ++|||.+ +...+.+..|.++|..+++.|+. .+|
T Consensus 220 ~~~~v~~~~~s~----d---g~~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~d~-------------~~l 277 (577)
T 2ymu_A 220 HSSSVRGVAFSP----D---GQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRPDG-------------QTI 277 (577)
T ss_dssp CSSCEEEEEECT----T---SSCEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECTTS-------------SEE
T ss_pred CCCCEEEEEECC----C---CCEEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcCCC-------------CEE
Confidence 344455555533 2 44566666554 9999973 56777888899999999999752 355
Q ss_pred EEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEEEe-
Q 003221 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVGL- 209 (838)
Q Consensus 134 avV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV~l- 209 (838)
+..+. .++|++||. +++.+..+. +...|.+++++++ .|+++.
T Consensus 278 ~~~~~---------------------------------d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~ 323 (577)
T 2ymu_A 278 ASASD---------------------------------DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323 (577)
T ss_dssp EEEET---------------------------------TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeC---------------------------------CCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeC
Confidence 54321 267999996 566777775 4579999999875 666655
Q ss_pred CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCC--CceeecCCCCCCcccCC---CCC
Q 003221 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTP---SGV 282 (838)
Q Consensus 210 ~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~--~~~l~~~G~vs~q~l~~---~~~ 282 (838)
++.|++||+.+. .+..+..+..+ ...++++| ++||.... .+.+|+......+.+.. +..
T Consensus 324 d~~i~~w~~~~~-~~~~~~~~~~~-------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~ 389 (577)
T 2ymu_A 324 DKTVKLWNRNGQ-HLQTLTGHSSS-------------VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 389 (577)
T ss_dssp TSCEEEEETTSC-EEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE
T ss_pred CCeEEEEeCCCC-eeEEEeCCCCC-------------EEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE
Confidence 568999997654 44555444432 34567776 67876643 35677742111111111 000
Q ss_pred CCCCCCCCCcceeeeehhhhhhhh--cc-ccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC
Q 003221 283 SPSTSPGGSSLVARYAMEHSKQFA--AG-LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (838)
Q Consensus 283 s~stsps~gslva~~A~ds~k~la--~G-l~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~ 359 (838)
....+|.+. +++....+....+. .+ +.+++..+ ......+.++++.+.+. .+..+|.|++||+ ++
T Consensus 390 ~~~~s~dg~-~l~~~~~d~~v~~~~~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~----~~~~d~~v~~w~~-~~ 457 (577)
T 2ymu_A 390 GVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGH------SSSVWGVAFSPDDQTIA----SASDDKTVKLWNR-NG 457 (577)
T ss_dssp EEEECTTSS-CEEEEETTSEEEEECTTCCEEEEEECC------SSCEEEEEECTTSSEEE----EEETTSEEEEEET-TS
T ss_pred EEEECCCCC-EEEEEeCCCEEEEEeCCCCEEEEecCC------CCCeEEEEECCCCCEEE----EEcCCCEEEEEEC-CC
Confidence 111233332 22221122111110 11 11122111 11111222333333332 4567999999997 56
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003221 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (838)
Q Consensus 360 ~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF 439 (838)
+.+..+.+|..+|.+++|+|+|++||+++.|++ |+|||.. | +.+..+. |+ ...|.+|+|
T Consensus 458 ~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~~--------~----------~~~~~~~-~h-~~~v~~l~~ 516 (577)
T 2ymu_A 458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRN--------G----------QLLQTLT-GH-SSSVRGVAF 516 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEETT--------S----------CEEEEEE-CC-SSCEEEEEE
T ss_pred CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcCC--------C----------CEEEEEe-CC-CCCEEEEEE
Confidence 788899999999999999999999999999765 9999963 3 3566664 43 457999999
Q ss_pred ccCCCEEEEEeCCCeEEEEecCCCCCccccccCCC
Q 003221 440 SHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 440 SpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
|||+++||+++.||+|+||+++ ......+.+|..
T Consensus 517 s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~ 550 (577)
T 2ymu_A 517 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSS 550 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSS
T ss_pred cCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCC
Confidence 9999999999999999999963 333445677753
No 41
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.88 E-value=1.8e-20 Score=202.17 Aligned_cols=289 Identities=11% Similarity=0.045 Sum_probs=192.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCc------eeEEeeeccCcEEEEEEecCCCCCCCCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASN------FNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~------v~ells~hdg~V~~l~~lP~p~~~~~~d 124 (838)
..++++.|..+.|+. +.|++|..+ .++|||++. ++ +...+..|.++|.++++.|+.
T Consensus 12 ~~~h~~~i~~~~~~~---------~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------- 74 (397)
T 1sq9_A 12 GKAHDADIFSVSACN---------SFTVSCSGDGYLKVWDNKL-LDNENPKDKSYSHFVHKSGLHHVDVLQAI------- 74 (397)
T ss_dssp SSCSSSCEEEEEECS---------SEEEEEETTSEEEEEESBC-CTTCCGGGGEEEEECCTTCEEEEEEEEEE-------
T ss_pred hhhhhcCeEEEEecC---------CeEEEEcCCCEEEEEECCC-cccccCCCcceEEecCCCcEEEEEEeccc-------
Confidence 467889999999954 355555555 599999965 44 456667889999999999741
Q ss_pred CcccCC---cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeE-----EEEEeCC----
Q 003221 125 GFRKLH---PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----EHVLRFR---- 192 (838)
Q Consensus 125 ~F~~sr---pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~-----V~tL~f~---- 192 (838)
.... .+|+..+. +++|++||+.+++. +..+..+
T Consensus 75 --~~~g~~~~~l~s~~~---------------------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 119 (397)
T 1sq9_A 75 --ERDAFELCLVATTSF---------------------------------SGDLLFYRITREDETKKVIFEKLDLLDSDM 119 (397)
T ss_dssp --ETTTEEEEEEEEEET---------------------------------TSCEEEEEEEECTTTCCEEEEEECCSCTTG
T ss_pred --ccCCccccEEEEEcC---------------------------------CCCEEEEEccCCcccccccceeeccccccc
Confidence 0001 25554321 26799999999886 7777655
Q ss_pred --CcEEEEEeC----CC--e-EEEEe-CCeEEEEECCC------Cceee-----EEee-------cCCcccCCCCccccc
Q 003221 193 --SSVCMVRCS----PR--I-VAVGL-ATQIYCFDALT------LENKF-----SVLT-------YPVPQLAGQGAVGIN 244 (838)
Q Consensus 193 --s~V~sV~~s----~~--i-LaV~l-~~~I~IwD~~t------~e~l~-----tL~t-------~p~p~~~~~~~~~~~ 244 (838)
..|.+++++ ++ + |+++. ++.|++||+.+ ++.+. ++.. +..
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 187 (397)
T 1sq9_A 120 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ------------ 187 (397)
T ss_dssp GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC------------
T ss_pred CCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC------------
Confidence 899999999 53 6 77765 56899999998 66655 5542 111
Q ss_pred cccceeEEccc-EEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccC
Q 003221 245 VGYGPMAVGPR-WLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 321 (838)
Q Consensus 245 ~g~g~~Alspr-~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~ 321 (838)
....+++++. +|+.+.. .+.+|+.-.. ..+.. +.....+..
T Consensus 188 -~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------------~~~~~----------------~~~~~~h~~ 231 (397)
T 1sq9_A 188 -FATSVDISERGLIATGFNNGTVQISELSTL-------------------RPLYN----------------FESQHSMIN 231 (397)
T ss_dssp -CCCEEEECTTSEEEEECTTSEEEEEETTTT-------------------EEEEE----------------EECCC---C
T ss_pred -CceEEEECCCceEEEEeCCCcEEEEECCCC-------------------ceeEE----------------Eeccccccc
Confidence 1345666653 5555543 3556663110 00000 000000000
Q ss_pred CCCCCCCccCCCccccccccccccCCC---ceEEEEECCCCcEEEEecc-------------CCCCeEEEEECCCCCEEE
Q 003221 322 PDGSSSPVSPNSVWKVGRHAGADMDNA---GIVVVKDFVTRAIISQFKA-------------HTSPISALCFDPSGTLLV 385 (838)
Q Consensus 322 p~gs~s~~s~n~~~k~~~~~~~~g~~~---G~V~VwDl~s~~~v~~~~a-------------H~spIsaLaFSPdGtlLA 385 (838)
.......+.+++..+.+. .+..+ |.|+|||+.+++.+..+.+ |..+|.+++|+|+|.+||
T Consensus 232 ~~~~i~~i~~~~~~~~l~----~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLA----IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp CCCCEEEEEECSSTTEEE----EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred cCCccceEEECCCCCEEE----EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 000111112222223222 34567 9999999999999999999 999999999999999999
Q ss_pred EEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec-----cc--------------ccccEEEEEEccCC---
Q 003221 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------------TSATIQDICFSHYS--- 443 (838)
Q Consensus 386 TAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R-----G~--------------t~a~I~sIaFSpDg--- 443 (838)
+++.+|. |+|||+.. + ..+..+.. ++ +...|.+++|+||+
T Consensus 308 ~~~~dg~-i~iwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 308 SAGWDGK-LRFWDVKT-------K----------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp EEETTSE-EEEEETTT-------T----------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred EEeCCCe-EEEEEcCC-------C----------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 9999765 99999964 2 45666641 22 14579999999999
Q ss_pred -------CEEEEEeCCCeEEEEecCC
Q 003221 444 -------QWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 444 -------~~Las~S~dGTVhIw~l~~ 462 (838)
++|++++.||+|+||++..
T Consensus 370 ~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 370 GMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp STTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccceEEEecCCCcEEEEEcCC
Confidence 7999999999999999865
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.88 E-value=1.4e-19 Score=190.65 Aligned_cols=240 Identities=12% Similarity=0.155 Sum_probs=175.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
..++..|.-+.|.. + ++.|++|..+| ++|||+. .+++...+..|.+.|.++.+.|++ .
T Consensus 62 ~~h~~~v~~~~~~~----~---~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-------------~ 120 (312)
T 4ery_A 62 SGHKLGISDVAWSS----D---SNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQS-------------N 120 (312)
T ss_dssp CCCSSCEEEEEECT----T---SSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSSS-------------S
T ss_pred ccCCCceEEEEEcC----C---CCEEEEECCCCEEEEEECC-CCcEEEEEcCCCCCEEEEEEcCCC-------------C
Confidence 45667777777754 2 45677766665 9999996 466777888899999999999752 3
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eEEEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVAVG 208 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iLaV~ 208 (838)
+|+..+. +++|++||+++++.+..+.. ...|.++.++++ +|+++
T Consensus 121 ~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 121 LIVSGSF---------------------------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEEEEET---------------------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEeC---------------------------------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 5554321 26799999999999998875 468999999875 66655
Q ss_pred e-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 209 l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
. ++.|++||+.+++.+..+.....+ ++ ..++|.++.
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~---------------~~----~~~~~~~~~------------------------ 204 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNP---------------PV----SFVKFSPNG------------------------ 204 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCC---------------CE----EEEEECTTS------------------------
T ss_pred eCCCcEEEEECCCCceeeEEeccCCC---------------ce----EEEEECCCC------------------------
Confidence 4 668999999998877765432111 11 123343321
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
.+++ .+..+|.|+|||+.+++.+..+.+
T Consensus 205 ----~~l~------------------------------------------------~~~~d~~i~iwd~~~~~~~~~~~~ 232 (312)
T 4ery_A 205 ----KYIL------------------------------------------------AATLDNTLKLWDYSKGKCLKTYTG 232 (312)
T ss_dssp ----SEEE------------------------------------------------EEETTTEEEEEETTTTEEEEEECS
T ss_pred ----CEEE------------------------------------------------EEcCCCeEEEEECCCCcEEEEEEe
Confidence 0000 134578999999999999999999
Q ss_pred CCCCeE---EEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003221 368 HTSPIS---ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (838)
Q Consensus 368 H~spIs---aLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~ 444 (838)
|...+. .....++|.+|++++.||. |+|||+.. + ..+.++ +|+ ...|.+++|+|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~-~~h-~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQT-------K----------EIVQKL-QGH-TDVVISTACHPTEN 292 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTT-------C----------CEEEEE-CCC-SSCEEEEEECSSSS
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCC-------c----------hhhhhh-hcc-CCcEEEEeecCcCC
Confidence 987543 3344578999999999886 99999964 2 355666 454 35799999999999
Q ss_pred EEEEEe--CCCeEEEEecC
Q 003221 445 WIAIVS--SKGTCHVFVLS 461 (838)
Q Consensus 445 ~Las~S--~dGTVhIw~l~ 461 (838)
+|++++ .|++|+||+.+
T Consensus 293 ~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 293 IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECTTTCCEEEEECC
T ss_pred ceEEEEccCCccEEEecCC
Confidence 999997 69999999964
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.8e-20 Score=189.07 Aligned_cols=273 Identities=12% Similarity=0.084 Sum_probs=186.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..+|++.|.-+.| . + +..|++|..+| ++|||++ .+.....+..|.++|..+++.|+.
T Consensus 14 l~~h~~~v~~~~~-~----~---~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~------------- 71 (313)
T 3odt_A 14 LKGHDQDVRDVVA-V----D---DSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQGFLNSVCYDSEK------------- 71 (313)
T ss_dssp ECCCSSCEEEEEE-E----E---TTEEEEEETTSEEEEEEES-SSEEEEEEEECSSCEEEEEEETTT-------------
T ss_pred hhCCCCCcEEEEe-c----C---CCEEEEEEcCCcEEEEECC-CCEEEEEeecCCccEEEEEECCCC-------------
Confidence 4678889999888 3 2 34566666665 9999995 566777888899999999999852
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCC---eEEEEEe-CCCcEEEEEeCCCeEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---CYEHVLR-FRSSVCMVRCSPRIVA 206 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg---~~V~tL~-f~s~V~sV~~s~~iLa 206 (838)
.+|++.+. .+.|++|++... +.+..+. +...|.++.++.++|+
T Consensus 72 ~~l~~~~~---------------------------------dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 118 (313)
T 3odt_A 72 ELLLFGGK---------------------------------DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVI 118 (313)
T ss_dssp TEEEEEET---------------------------------TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEE
T ss_pred CEEEEecC---------------------------------CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEE
Confidence 35655332 267999998654 5566664 4579999999888777
Q ss_pred EEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEc---ccEEEEeC--CCceeecCCCCCCcccCCC
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG---PRWLAYAS--NTLLLSNSGRLSPQNLTPS 280 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Als---pr~LAys~--~~~~l~~~G~vs~q~l~~~ 280 (838)
++. ++.|++|| +.+....+..+..+ ...+++. ..+|+..+ ..+.+|+.+.. ...+...
T Consensus 119 ~~~~d~~i~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~ 182 (313)
T 3odt_A 119 SGSWDKTAKVWK--EGSLVYNLQAHNAS-------------VWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGI 182 (313)
T ss_dssp EEETTSEEEEEE--TTEEEEEEECCSSC-------------EEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSS
T ss_pred EEeCCCCEEEEc--CCcEEEecccCCCc-------------eeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEecc
Confidence 766 56899999 56666666655443 2233332 35555543 24566763221 0000000
Q ss_pred CCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc
Q 003221 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (838)
Q Consensus 281 ~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~ 360 (838)
.........+++... + ..+..+|.|++||+.+++
T Consensus 183 -----------------------------------------~~~~i~~~~~~~~~~-~----~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 183 -----------------------------------------HNDVVRHLAVVDDGH-F----ISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp -----------------------------------------CSSCEEEEEEEETTE-E----EEEETTSEEEEEETTTCC
T ss_pred -----------------------------------------CcccEEEEEEcCCCe-E----EEccCCCeEEEEECCchh
Confidence 000000011111111 1 135679999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 440 (838)
.+..+.+|..+|.+++|+|+| .|++++.+|. |+|||+.. + ..+..+. + +...|.+++|+
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~-------~----------~~~~~~~-~-~~~~i~~~~~~ 275 (313)
T 3odt_A 217 VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKEN-------G----------SLKQVIT-L-PAISIWSVDCM 275 (313)
T ss_dssp EEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTT-------C----------CEEEEEE-C-SSSCEEEEEEC
T ss_pred hhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCC-------C----------ceeEEEe-c-cCceEEEEEEc
Confidence 999999999999999999999 5889998775 99999964 3 3555554 2 23479999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~~ 463 (838)
||++ +++++.||+|+||++...
T Consensus 276 ~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 276 SNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp TTSC-EEEEETTSCEEEEESCGG
T ss_pred cCCC-EEEEeCCCcEEEEeCCCC
Confidence 9999 567999999999999764
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.88 E-value=8.3e-20 Score=197.24 Aligned_cols=250 Identities=13% Similarity=0.102 Sum_probs=167.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC-ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g-~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
+++++.|.-+.|.. + ++.|++|..+ .++|||++... .+...+..|.++|.++++.|+.
T Consensus 58 ~~h~~~v~~~~~sp----~---g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~------------- 117 (345)
T 3fm0_A 58 EGHQRTVRKVAWSP----C---GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG------------- 117 (345)
T ss_dssp SSCSSCEEEEEECT----T---SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred cccCCcEEEEEECC----C---CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-------------
Confidence 56788888888865 2 4566666655 59999996432 3456678899999999999853
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe---EEEEEe-CCCcEEEEEeCCC--e
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLR-FRSSVCMVRCSPR--I 204 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~---~V~tL~-f~s~V~sV~~s~~--i 204 (838)
.+|+..+. +++|++||+++++ ++..+. +...|.+++++++ +
T Consensus 118 ~~l~s~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 118 NLLATCSR---------------------------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp SEEEEEET---------------------------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred CEEEEEEC---------------------------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 36655332 2689999998774 344554 4568999999875 6
Q ss_pred EEEEe-CCeEEEEECCCCce--eeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCCCceeecCCCCCCcccCC
Q 003221 205 VAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTP 279 (838)
Q Consensus 205 LaV~l-~~~I~IwD~~t~e~--l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~ 279 (838)
|+++. ++.|++||+.+.+. ..++..|..+ ...++++| ++||.
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~-------------v~~l~~sp~g~~l~s-------------------- 211 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHEST-------------VWSLAFDPSGQRLAS-------------------- 211 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECTTSSEEEE--------------------
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCc-------------eEEEEECCCCCEEEE--------------------
Confidence 66655 66899999987653 3444444332 22344433 23332
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC-
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT- 358 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s- 358 (838)
++.||+|+|||...
T Consensus 212 -----------------------------------------------------------------~s~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 212 -----------------------------------------------------------------CSDDRTVRIWRQYLP 226 (345)
T ss_dssp -----------------------------------------------------------------EETTSCEEEEEEECT
T ss_pred -----------------------------------------------------------------EeCCCeEEEeccccC
Confidence 23455566665421
Q ss_pred --------------CcEEEEecc-CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 359 --------------RAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 359 --------------~~~v~~~~a-H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
.+++..+.+ |...|.+++|+|+|.+||+++.|++ |+||+..+.. . ..........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~-----~----~~~~~~~~~~ 296 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNS-----D----PQQPTFSLTA 296 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTS-----C----TTSCCEEEEE
T ss_pred CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCC-----C----cceeeEEEEe
Confidence 133455555 9999999999999999999999776 9999986420 0 0001111222
Q ss_pred EEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCC
Q 003221 424 KLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg-~~Las~S~dGTVhIw~l~~~g 464 (838)
.+.+|+ ...|.+|+|+|++ .+||++|.||+|+||++....
T Consensus 297 ~~~~~h-~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 297 HLHQAH-SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EETTSS-SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred eecccc-cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 333454 4579999999998 599999999999999997654
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1e-19 Score=199.60 Aligned_cols=270 Identities=11% Similarity=0.068 Sum_probs=184.1
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeee-ccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSK-RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~-hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
..++++|.++.++|||++ .+.+..++.. |.++|.++++.|+. .+|++.+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~~~~~v~~v~~s~~~-------------~~l~~~~~--------------- 154 (401)
T 4aez_A 104 LNVVAVALERNVYVWNAD-SGSVSALAETDESTYVASVKWSHDG-------------SFLSVGLG--------------- 154 (401)
T ss_dssp TSEEEEEETTEEEEEETT-TCCEEEEEECCTTCCEEEEEECTTS-------------SEEEEEET---------------
T ss_pred CCEEEEECCCeEEEeeCC-CCcEeEeeecCCCCCEEEEEECCCC-------------CEEEEECC---------------
Confidence 568888878889999996 4666666655 78899999999852 36655331
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCCeEEEEe-CCeEEEEECCC-CceeeEEeec
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-ATQIYCFDALT-LENKFSVLTY 230 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~iLaV~l-~~~I~IwD~~t-~e~l~tL~t~ 230 (838)
+++|++||+.+++.+..+. +...|.++++++++|+++. ++.|++||+.+ .+....+..+
T Consensus 155 ------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 155 ------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp ------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred ------------------CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 2679999999999999986 4579999999998877766 56899999994 4455555555
Q ss_pred CCcccCCCCccccccccceeEEcc--cEEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhh
Q 003221 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (838)
Q Consensus 231 p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la 306 (838)
..+ ...+++++ ++|+.++. .+.+|+..... .+.
T Consensus 217 ~~~-------------v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-------------------~~~----------- 253 (401)
T 4aez_A 217 SSE-------------VCGLAWRSDGLQLASGGNDNVVQIWDARSSI-------------------PKF----------- 253 (401)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTCSS-------------------EEE-----------
T ss_pred CCC-------------eeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-------------------ccE-----------
Confidence 442 34567765 67776643 56678742110 000
Q ss_pred ccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003221 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (838)
Q Consensus 307 ~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLAT 386 (838)
++..+ ......+.+++....+... ..+..+|.|++||+.+++.+..+. |..+|.+++|+|+|.+|++
T Consensus 254 -----~~~~~------~~~v~~~~~~p~~~~ll~~-~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 254 -----TKTNH------NAAVKAVAWCPWQSNLLAT-GGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp -----EECCC------SSCCCEEEECTTSTTEEEE-ECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred -----EecCC------cceEEEEEECCCCCCEEEE-ecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 00000 0001111112111111111 123479999999999999888886 6689999999999999999
Q ss_pred Ee--cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 387 AS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 387 AS--~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
++ .+| .|+|||+.. + ....+.++. + +...|.+++|+||+++|++++.||+|+||++....
T Consensus 321 ~~g~~dg-~i~v~~~~~-------~--------~~~~~~~~~-~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 321 THGFPDN-NLSIWSYSS-------S--------GLTKQVDIP-A-HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EECTTTC-EEEEEEEET-------T--------EEEEEEEEE-C-CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred EeecCCC-cEEEEecCC-------c--------cceeEEEec-C-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 65 655 599999853 2 012333442 3 34579999999999999999999999999998654
Q ss_pred C
Q 003221 465 G 465 (838)
Q Consensus 465 g 465 (838)
.
T Consensus 383 ~ 383 (401)
T 4aez_A 383 H 383 (401)
T ss_dssp -
T ss_pred c
Confidence 3
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.87 E-value=2.4e-20 Score=203.08 Aligned_cols=251 Identities=13% Similarity=0.127 Sum_probs=174.1
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
++.|++|..+| ++|||+. .+.+..++..|.++|.++++.|+. .+|+..+.
T Consensus 109 ~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~s~s~--------------- 159 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPSG-------------EALISSSQ--------------- 159 (420)
T ss_dssp SCEEEEEETTSCEEEECTT-SCEEEEETTSSSSCEEEEEECTTS-------------SEEEEEET---------------
T ss_pred CCEEEEEECCCCEEEEeCC-CcceeeecccccCccEEEEECCCC-------------CEEEEEeC---------------
Confidence 45677776665 9999995 567777778899999999999852 25654331
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+++|++||+++++.+..+. +...|.+++++++ +|+++. ++.|++||+.+++.+.++..
T Consensus 160 ------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 221 (420)
T 3vl1_A 160 ------------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221 (420)
T ss_dssp ------------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred ------------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence 2789999999999999887 5679999999875 566655 56799999999998888765
Q ss_pred cCCcccCCCCccccccccceeEEcccEEEEeCC-CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcc
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~-~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~G 308 (838)
+..+. . .... +++... ...+...
T Consensus 222 ~~~~~------~----~v~~-------~~~~~~~~~~~~~~--------------------------------------- 245 (420)
T 3vl1_A 222 KENPH------D----GVNS-------IALFVGTDRQLHEI--------------------------------------- 245 (420)
T ss_dssp TTBTT------C----CEEE-------EEEEECCCSSCGGG---------------------------------------
T ss_pred CCCCC------C----CccE-------EEEecCCcceeeec---------------------------------------
Confidence 43320 0 0112 222211 1000000
Q ss_pred ccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEEE
Q 003221 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLVT 386 (838)
Q Consensus 309 l~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~-aH~spIsaLaFSPdGt-lLAT 386 (838)
.........+++.++.+. .+..+|.|+|||+.+++.+..+. .|..+|.+++|+|+|. +|++
T Consensus 246 -------------~~~~v~~~~~s~~~~~l~----~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 246 -------------STSKKNNLEFGTYGKYVI----AGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp -------------CCCCCCTTCSSCTTEEEE----EEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred -------------ccCcccceEEcCCCCEEE----EEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE
Confidence 000011112222222222 35678999999999988777665 5899999999999999 9999
Q ss_pred EecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 387 AS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
++.+|+ |+|||+.. +. ..+..+. +++...|.++.| +|+++|++++.||+|+||++....
T Consensus 309 g~~dg~-i~vwd~~~-------~~---------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 309 GYENGM-LAQWDLRS-------PE---------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EETTSE-EEEEETTC-------TT---------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred EeCCCe-EEEEEcCC-------Cc---------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 999775 99999964 21 2234443 334557888855 588999999999999999998743
No 47
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.87 E-value=1.6e-19 Score=193.90 Aligned_cols=266 Identities=15% Similarity=0.166 Sum_probs=177.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEee-------------eccCcEEEEEEecCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS-------------KRDGPVSFLQMQPFP 117 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells-------------~hdg~V~~l~~lP~p 117 (838)
...+++.|.-+.|..- .++.|++|..+| ++|||++... ....+. .|.++|..+++.|+.
T Consensus 39 ~~~h~~~v~~~~~s~~------~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 39 ERIHGGGINTLDIEPV------EGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CCCCSSCEEEEEECTT------TCCEEEEEETTSCEEEEECCCCS-SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred eeccCCcEEEEEEecC------CCCEEEEEcCCCeEEEEECCCCc-ccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 3458899999998541 145677776665 9999997533 333332 488999999999731
Q ss_pred CCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEE
Q 003221 118 VKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCM 197 (838)
Q Consensus 118 ~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~s 197 (838)
..+|+..+. +++|++||+++++.+..+.+...+.+
T Consensus 112 ------------~~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (408)
T 4a11_B 112 ------------TGMFTSSSF---------------------------------DKTLKVWDTNTLQTADVFNFEETVYS 146 (408)
T ss_dssp ------------TTCEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred ------------CcEEEEEeC---------------------------------CCeEEEeeCCCCccceeccCCCceee
Confidence 125554321 27899999999999999999999999
Q ss_pred EEeCCC-----eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCC
Q 003221 198 VRCSPR-----IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR 271 (838)
Q Consensus 198 V~~s~~-----iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~ 271 (838)
+.+.+. +|+++. ++.|++||+.+++.+..+..+..+ ...+ ++.++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------v~~~-------~~~~~~-------- 198 (408)
T 4a11_B 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE-------------ILAV-------SWSPRY-------- 198 (408)
T ss_dssp EEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC-------------EEEE-------EECSSC--------
T ss_pred eEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc-------------EEEE-------EECCCC--------
Confidence 999762 566655 568999999999888777655442 1222 332210
Q ss_pred CCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceE
Q 003221 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (838)
Q Consensus 272 vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V 351 (838)
..+++ .+..+|.|
T Consensus 199 -------------------~~ll~------------------------------------------------~~~~dg~i 211 (408)
T 4a11_B 199 -------------------DYILA------------------------------------------------TASADSRV 211 (408)
T ss_dssp -------------------TTEEE------------------------------------------------EEETTSCE
T ss_pred -------------------CcEEE------------------------------------------------EEcCCCcE
Confidence 00000 13457888
Q ss_pred EEEECCCCc-EEEEe---------------ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccC-CCCC----
Q 003221 352 VVKDFVTRA-IISQF---------------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGN---- 410 (838)
Q Consensus 352 ~VwDl~s~~-~v~~~---------------~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~-~~G~---- 410 (838)
++||+.++. .+..+ .+|..+|.+++|+|+|++|++++.+|. |+|||+....... ..+.
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~ 290 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNN 290 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCC
T ss_pred EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceecccccccc
Confidence 888887654 33343 689999999999999999999999876 9999986421000 0000
Q ss_pred --Cc------------------------cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 411 --HK------------------------YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 411 --~~------------------------~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
.. .+. .....+..+ .+ +...|.+++|+||+++|++++.||+|+||++....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV-YSGEQITML-KG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CSSCCCCEECCSSSSCEEEEEETTEEEEEET-TTCCEEEEE-CC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred ccccceeEEecCCCceEEEEecCCEEEEEEC-cCCcceeee-cc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 00 000 011334444 33 34579999999999999999999999999998765
Q ss_pred Cccc
Q 003221 465 GDSG 468 (838)
Q Consensus 465 g~~~ 468 (838)
....
T Consensus 368 ~~~~ 371 (408)
T 4a11_B 368 PVPD 371 (408)
T ss_dssp ----
T ss_pred ccCC
Confidence 4433
No 48
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.87 E-value=7.8e-20 Score=196.73 Aligned_cols=240 Identities=12% Similarity=0.206 Sum_probs=161.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
.++++.|.-+.|.. + +.+|++|..+ .++|||+. .+.....+..|.++|.++++.|+. .
T Consensus 73 ~~h~~~V~~~~~~~----~---~~~l~s~s~D~~v~lwd~~-~~~~~~~~~~h~~~v~~v~~sp~~-------------~ 131 (343)
T 2xzm_R 73 TGHNHFVSDLALSQ----E---NCFAISSSWDKTLRLWDLR-TGTTYKRFVGHQSEVYSVAFSPDN-------------R 131 (343)
T ss_dssp CCCSSCEEEEEECS----S---TTEEEEEETTSEEEEEETT-SSCEEEEEECCCSCEEEEEECSST-------------T
T ss_pred ccCCCceEEEEECC----C---CCEEEEEcCCCcEEEEECC-CCcEEEEEcCCCCcEEEEEECCCC-------------C
Confidence 45677777777754 2 4566666655 59999996 466777788899999999999853 2
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCCcEEEEEeCCC-----
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSPR----- 203 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL---~f~s~V~sV~~s~~----- 203 (838)
+|+..+. +++|++||+......... .+...|.+++++++
T Consensus 132 ~l~s~~~---------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 132 QILSAGA---------------------------------EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEEEEET---------------------------------TSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred EEEEEcC---------------------------------CCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence 5554332 268999999854333222 24468999999874
Q ss_pred -------eEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCc
Q 003221 204 -------IVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQ 275 (838)
Q Consensus 204 -------iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q 275 (838)
+|++ +.++.|++|| .+.+...++..|..+ ... |+|.++.
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~-------------v~~-------~~~s~~g------------ 225 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN-------------VNH-------LSISPNG------------ 225 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC-------------EEE-------EEECTTS------------
T ss_pred ccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc-------------ceE-------EEECCCC------------
Confidence 4555 4567899999 445566666555442 122 3333211
Q ss_pred ccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEE
Q 003221 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD 355 (838)
Q Consensus 276 ~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwD 355 (838)
.+++ ++..||.|+|||
T Consensus 226 ----------------~~l~------------------------------------------------sgs~dg~v~iwd 241 (343)
T 2xzm_R 226 ----------------KYIA------------------------------------------------TGGKDKKLLIWD 241 (343)
T ss_dssp ----------------SEEE------------------------------------------------EEETTCEEEEEE
T ss_pred ----------------CEEE------------------------------------------------EEcCCCeEEEEE
Confidence 0000 245689999999
Q ss_pred CCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe--------
Q 003221 356 FVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-------- 426 (838)
Q Consensus 356 l~s~-~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-------- 426 (838)
+.+. .....+ .|..+|.+++|+|+|.+|++++. ++ |+|||+... . ...+..+.
T Consensus 242 ~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d-~~-v~iw~~~~~-------~--------~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 242 ILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTD-QG-VKIFNLMTQ-------S--------KAPVCTIEAEPITKAE 303 (343)
T ss_dssp SSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEES-SC-EEEEESSSC-------C--------SCSEEECCCCSGGGBT
T ss_pred CCCCcccceee-cCCCcEEEEEECCCCCEEEEECC-CC-EEEEEeCCC-------C--------CCceEEeecCcchhhh
Confidence 9543 333344 45678999999999999886654 55 999998642 0 01122221
Q ss_pred --cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 427 --RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 427 --RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
+| +...|.+|+|+|||++|++++.||+|+||+++.
T Consensus 304 ~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 304 GQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp TBCC-SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred hhcC-CCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 13 334699999999999999999999999999864
No 49
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.87 E-value=5.8e-20 Score=198.73 Aligned_cols=281 Identities=14% Similarity=0.093 Sum_probs=183.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEee--eccCcEEEEEEecCCCCCCCCCCccc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRK 128 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells--~hdg~V~~l~~lP~p~~~~~~d~F~~ 128 (838)
...+.+.|..+.|.. ++ .++|++|..+| ++|||+.. +.....+. .|.++|.++++.|+
T Consensus 69 ~~~h~~~v~~~~~~~----~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~------------ 129 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHP----TH--PTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQF------------ 129 (383)
T ss_dssp ECCCSSCEEEEEECS----SC--TTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETT------------
T ss_pred ccCCCCCEEEEEECC----CC--CCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCC------------
Confidence 466888999999976 21 25677776665 99999964 55555554 58899999999972
Q ss_pred CCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CC---CcEEEEEeCCC-
Q 003221 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FR---SSVCMVRCSPR- 203 (838)
Q Consensus 129 srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~---s~V~sV~~s~~- 203 (838)
...+|++.+. +++|++||+++ +.+..+. .. ..|.+++++++
T Consensus 130 ~~~~l~s~~~---------------------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 130 NTNQLFVSSI---------------------------------RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR 175 (383)
T ss_dssp EEEEEEEEET---------------------------------TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT
T ss_pred CCCEEEEEeC---------------------------------CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC
Confidence 1125554321 37899999996 4445553 22 67999999875
Q ss_pred -eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--c-EEEEeCC--CceeecCCCCCCcc
Q 003221 204 -IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASN--TLLLSNSGRLSPQN 276 (838)
Q Consensus 204 -iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r-~LAys~~--~~~l~~~G~vs~q~ 276 (838)
+|+++. ++.|++||+ +++.+.++..+..+ ...+++++ + +|+.++. .+.+|+......
T Consensus 176 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~-------------v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-- 239 (383)
T 3ei3_B 176 QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK-------------VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD-- 239 (383)
T ss_dssp TEEEEEETTSEEEEEET-TSCEEEEEECSSSC-------------EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS--
T ss_pred CEEEEECCCCCEEEEEC-CCCEEEEeccCCCc-------------EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc--
Confidence 666655 568999999 57777777766543 44677776 3 6665543 466787421100
Q ss_pred cCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCC-ccccccccccccCCCceEEEEE
Q 003221 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGADMDNAGIVVVKD 355 (838)
Q Consensus 277 l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~-~~k~~~~~~~~g~~~G~V~VwD 355 (838)
.+..+.. + . ..+....+.+++ ..+.+. .+..+|.|+|||
T Consensus 240 -------------~~~~~~~----------------~-~------~~~~v~~~~~s~~~~~~l~----~~~~d~~i~iwd 279 (383)
T 3ei3_B 240 -------------KNSYIAE----------------M-P------HEKPVNAAYFNPTDSTKLL----TTDQRNEIRVYS 279 (383)
T ss_dssp -------------TTCEEEE----------------E-E------CSSCEEEEEECTTTSCEEE----EEESSSEEEEEE
T ss_pred -------------ccceEEE----------------e-c------CCCceEEEEEcCCCCCEEE----EEcCCCcEEEEE
Confidence 0011100 0 0 000111112222 222222 356789999999
Q ss_pred CCCCcEEEEeccCC-----------------CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCc
Q 003221 356 FVTRAIISQFKAHT-----------------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (838)
Q Consensus 356 l~s~~~v~~~~aH~-----------------spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~ 418 (838)
+.+++.+..+..|. ..+.+++|+|+|++ +++.||+ |+|||+.. |
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~-------~--------- 340 (383)
T 3ei3_B 280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANS-------G--------- 340 (383)
T ss_dssp TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTT-------C---------
T ss_pred CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCC-------C---------
Confidence 99988777776653 34555777787777 7777666 99999964 3
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
..+..+....+...+..++|+||+++|++++ ||+|+||+++.
T Consensus 341 -~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 -GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred -ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4677775433455688889999999999997 89999999864
No 50
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.86 E-value=7.6e-21 Score=208.11 Aligned_cols=262 Identities=17% Similarity=0.146 Sum_probs=168.8
Q ss_pred EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCC
Q 003221 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (838)
Q Consensus 86 ~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~ 165 (838)
..+|+.. ...+...+.+|.++|.+++|.|+. .+|+..+.
T Consensus 48 ~~~~~~~-~~~~~~~l~gH~~~V~~~~~sp~~-------------~~l~s~s~--------------------------- 86 (380)
T 3iz6_a 48 AVSFNPT-DLVCCRTLQGHSGKVYSLDWTPEK-------------NWIVSASQ--------------------------- 86 (380)
T ss_dssp CCCCCCC-CCEEEEEECCCSSCEEEEEECTTS-------------SCEEEEET---------------------------
T ss_pred ccccccc-eeEEeecccccccEEEEEEEcCCC-------------CEEEEEeC---------------------------
Confidence 3456653 344667889999999999999853 35654321
Q ss_pred CCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEeCCC--eEEEE-eCCeEEEEECCCCce-------eeEEeecCCcc
Q 003221 166 GNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVG-LATQIYCFDALTLEN-------KFSVLTYPVPQ 234 (838)
Q Consensus 166 ~~~~~~p~tV~IWDl~tg~~V~tL~f~-s~V~sV~~s~~--iLaV~-l~~~I~IwD~~t~e~-------l~tL~t~p~p~ 234 (838)
+++|+|||+.+++.++.++.+ ..|.+++|+++ +|+++ .++.|++||+.+... ...+..|...
T Consensus 87 ------D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~- 159 (380)
T 3iz6_a 87 ------DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY- 159 (380)
T ss_dssp ------TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC-
T ss_pred ------CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc-
Confidence 378999999999999999865 58999999885 66664 466899999976431 1122222221
Q ss_pred cCCCCccccccccceeEEcc---cEEEEeC--CCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccc
Q 003221 235 LAGQGAVGINVGYGPMAVGP---RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (838)
Q Consensus 235 ~~~~~~~~~~~g~g~~Alsp---r~LAys~--~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl 309 (838)
...+++.+ ..|+.++ ..+.+|+...- ..+..+..+ .
T Consensus 160 ------------v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~-------------------~~~~~~~~~----~---- 200 (380)
T 3iz6_a 160 ------------ASSCQYVPDQETRLITGSGDQTCVLWDVTTG-------------------QRISIFGSE----F---- 200 (380)
T ss_dssp ------------CCCCBCCSSSSSCEEEECTTSCEEEECTTTC-------------------CEEEEECCC----S----
T ss_pred ------------eEEEEEecCCCCEEEEECCCCcEEEEEcCCC-------------------cEEEEeecc----c----
Confidence 12233333 3344443 35677874211 000000000 0
Q ss_pred cccccccccccCCCCCCCCccCCC-ccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003221 310 SKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (838)
Q Consensus 310 ~ktls~y~~~~~p~gs~s~~s~n~-~~k~~~~~~~~g~~~G~V~VwDl~-s~~~v~~~~aH~spIsaLaFSPdGtlLATA 387 (838)
..++. .......+++ ....+ .+++.||.|+|||+. ..+.+..+.+|..+|.+|+|+|+|.+||||
T Consensus 201 ---~~~h~------~~v~~~~~~~~~~~~l----~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 201 ---PSGHT------ADVLSLSINSLNANMF----ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp ---SSSCC------SCEEEEEECSSSCCEE----EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred ---CCCCc------cCeEEEEeecCCCCEE----EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE
Confidence 00000 0000011111 11111 246789999999997 457788999999999999999999999999
Q ss_pred ecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc-----ccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-----TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 388 S~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~-----t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
|.||+ |+|||+.. | ..+..+.... ....|.+++|+|||++|++++.||+|+||++..
T Consensus 268 s~D~~-i~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 268 SDDGT-CRLFDMRT-------G----------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp CSSSC-EEEEETTT-------T----------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred cCCCe-EEEEECCC-------C----------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 99887 99999964 3 3444443221 112489999999999999999999999999876
Q ss_pred CCC
Q 003221 463 FGG 465 (838)
Q Consensus 463 ~gg 465 (838)
...
T Consensus 330 ~~~ 332 (380)
T 3iz6_a 330 AEM 332 (380)
T ss_dssp CCE
T ss_pred Cce
Confidence 543
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.86 E-value=4.4e-20 Score=217.79 Aligned_cols=282 Identities=15% Similarity=0.184 Sum_probs=192.6
Q ss_pred hceeeeeccCCcceeeeccccccccceeccc--CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-
Q 003221 20 SSCLKTVSTNASTVASTVRSAGASVAASISN--ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS- 95 (838)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~s~a~~i~~--~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g- 95 (838)
...|.-+-+|..++...+..|...++..+.. ....|++.|..+.|.. + ...+|++|..+| ++|||+...+
T Consensus 344 ~~~~~~~~~G~~~~~~al~~a~~~~~~~l~~~~~l~~H~~~V~~v~~~~----~--~~~~l~s~s~D~~i~~W~~~~~~~ 417 (694)
T 3dm0_A 344 RTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPI----D--NADIIVSASRDKSIILWKLTKDDK 417 (694)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHCSSEEEEEEECCSSCEEEEECCT----T--CCSEEEEEETTSEEEEEECCCSTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhhcccchhhhcccCCceeEEEEecC----C--CCCEEEEEeCCCcEEEEEccCCCc
Confidence 3333334456666655555554433333332 3568999999998854 2 135777777655 9999996532
Q ss_pred ---ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCC
Q 003221 96 ---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSP 172 (838)
Q Consensus 96 ---~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p 172 (838)
.....+..|.+.|.++.+.|+. .+|+..+. +
T Consensus 418 ~~~~~~~~~~~h~~~v~~v~~s~~g-------------~~l~sgs~---------------------------------D 451 (694)
T 3dm0_A 418 AYGVAQRRLTGHSHFVEDVVLSSDG-------------QFALSGSW---------------------------------D 451 (694)
T ss_dssp CSCEEEEEEECCSSCEEEEEECTTS-------------SEEEEEET---------------------------------T
T ss_pred ccccccceecCCCCcEEEEEECCCC-------------CEEEEEeC---------------------------------C
Confidence 2345678899999999999753 35654221 3
Q ss_pred CEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
++|+|||+.+++.+..+. +...|.+++++++ +|++ +.++.|++||+... +..++...... . ..
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~------h------~~ 518 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEG------H------RD 518 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTS------C------SS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCC------C------CC
Confidence 789999999999998886 4569999999875 5555 45678999998653 33333211100 0 00
Q ss_pred eeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCC
Q 003221 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (838)
Q Consensus 249 ~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~ 328 (838)
.+ ..++|.++.. ...+
T Consensus 519 ~v----~~~~~~~~~~--------------------------~~~l---------------------------------- 534 (694)
T 3dm0_A 519 WV----SCVRFSPNTL--------------------------QPTI---------------------------------- 534 (694)
T ss_dssp CE----EEEEECSCSS--------------------------SCEE----------------------------------
T ss_pred cE----EEEEEeCCCC--------------------------cceE----------------------------------
Confidence 00 1233332100 0000
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCC
Q 003221 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (838)
Q Consensus 329 ~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~ 408 (838)
.+++.||+|+|||+.+++....+.+|..+|.+|+|+|+|++|||++.||+ |+|||+..
T Consensus 535 --------------~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~------- 592 (694)
T 3dm0_A 535 --------------VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAE------- 592 (694)
T ss_dssp --------------EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTT-------
T ss_pred --------------EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------
Confidence 02456899999999999999999999999999999999999999999776 99999964
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCc
Q 003221 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 409 G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~ 466 (838)
+ ..++.+.. ...|.+++|+||+.+|+++++ ++|+||++......
T Consensus 593 ~----------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 593 G----------KKLYSLEA---NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIV 636 (694)
T ss_dssp T----------EEEECCBC---SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEE
T ss_pred C----------ceEEEecC---CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCCh
Confidence 3 45655532 346999999999999988765 56999999865433
No 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.1e-20 Score=202.47 Aligned_cols=253 Identities=10% Similarity=0.090 Sum_probs=177.2
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccC---CCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVED---ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~---~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
+.+.|.-+.|.. + +++|++|..+ .++|||+.. .......+..|.++|.++++.|+. .
T Consensus 66 ~~~~v~~~~~s~----~---~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~ 126 (416)
T 2pm9_A 66 VDSKFNDLDWSH----N---NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ------------D 126 (416)
T ss_dssp CSSCEEEEEECS----S---SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS------------T
T ss_pred cCCceEEEEECC----C---CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC------------C
Confidence 567788888844 2 4567777665 599999965 133666778899999999999751 1
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe------EEEEE----eCCCcEEEEEe
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC------YEHVL----RFRSSVCMVRC 200 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~------~V~tL----~f~s~V~sV~~ 200 (838)
.+|+..+. +++|++||+++++ ....+ .+...|.++++
T Consensus 127 ~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 127 NVLASGGN---------------------------------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp TBEEEECS---------------------------------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred CEEEEEcC---------------------------------CCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 25544221 2679999999887 33333 34578999999
Q ss_pred CCC---eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcc
Q 003221 201 SPR---IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN 276 (838)
Q Consensus 201 s~~---iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~ 276 (838)
+++ +|+++. ++.|++||+.+++.+.++..+.... +. .... ..+++.++.
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~---~~~v-------~~~~~~~~~------------- 226 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS----GI---KQQL-------SVVEWHPKN------------- 226 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS----CC---CCCE-------EEEEECSSC-------------
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc----cc---CCce-------EEEEECCCC-------------
Confidence 875 666655 5679999999998877765432100 00 0001 223333210
Q ss_pred cCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCc---eEEE
Q 003221 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG---IVVV 353 (838)
Q Consensus 277 l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G---~V~V 353 (838)
..+++ .+..+| .|++
T Consensus 227 --------------~~~l~------------------------------------------------~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 227 --------------STRVA------------------------------------------------TATGSDNDPSILI 244 (416)
T ss_dssp --------------TTEEE------------------------------------------------EEECCSSSCCCCE
T ss_pred --------------CCEEE------------------------------------------------EEECCCCCceEEE
Confidence 00110 112344 8999
Q ss_pred EECCCC-cEEEEec-cCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003221 354 KDFVTR-AIISQFK-AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (838)
Q Consensus 354 wDl~s~-~~v~~~~-aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t 430 (838)
||+.++ +.+..+. +|..+|.+++|+| +|.+|++++.||+ |+|||+.. + ..+..+. + +
T Consensus 245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~-------~----------~~~~~~~-~-~ 304 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES-------A----------EQLSQFP-A-R 304 (416)
T ss_dssp EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS-------C----------CEEEEEE-C-S
T ss_pred EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC-------C----------ccceeec-C-C
Confidence 999986 5677888 9999999999999 9999999999775 99999864 2 4666664 3 3
Q ss_pred cccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCCCccc
Q 003221 431 SATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG 468 (838)
Q Consensus 431 ~a~I~sIaFSpDg-~~Las~S~dGTVhIw~l~~~gg~~~ 468 (838)
...|.+++|+||+ ++|++++.||+|+||++........
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 3579999999999 8999999999999999987665443
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=4.7e-19 Score=196.51 Aligned_cols=273 Identities=15% Similarity=0.139 Sum_probs=192.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
..+.+.|.-+.|+. ..|++|..+ .++|||++ .++....+..|.++|.++.+.+.
T Consensus 156 ~~h~~~v~~~~~~~---------~~l~s~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~--------------- 210 (445)
T 2ovr_B 156 VGHTGGVWSSQMRD---------NIIISGSTDRTLKVWNAE-TGECIHTLYGHTSTVRCMHLHEK--------------- 210 (445)
T ss_dssp CCCSSCEEEEEEET---------TEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEETT---------------
T ss_pred cCCCCCEEEEEecC---------CEEEEEeCCCeEEEEECC-cCcEEEEECCCCCcEEEEEecCC---------------
Confidence 44666676666652 355555555 59999995 46677778889999999987631
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCCeEEEEe-
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPRIVAVGL- 209 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~iLaV~l- 209 (838)
+|++.+. +++|++||+++++.+..+.. ...|.++.++.++|+++.
T Consensus 211 ~l~s~s~---------------------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 257 (445)
T 2ovr_B 211 RVVSGSR---------------------------------DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 257 (445)
T ss_dssp EEEEEET---------------------------------TSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred EEEEEeC---------------------------------CCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcC
Confidence 4544221 37899999999999998864 568999999888777766
Q ss_pred CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeC--CCceeecCCCCCCcccCCCCCCCCCC
Q 003221 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 210 ~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~--~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
++.|++||+.+++.+.++..+..+ ...+++..++|+.++ ..+.+|+....
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------- 309 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSIRVWDVETG--------------- 309 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCEEEEETTTC---------------
T ss_pred CCEEEEEECCCCcEeEEecCCCCc-------------eEEEEECCCEEEEEeCCCeEEEEECCCC---------------
Confidence 567999999999988887765543 334566667776654 34667774110
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
..+. ++..+. .....+.++ .+.+ ..+..+|.|++||+.+++.+..+..
T Consensus 310 ----~~~~----------------~~~~~~------~~v~~~~~~--~~~l----~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 310 ----NCIH----------------TLTGHQ------SLTSGMELK--DNIL----VSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp ----CEEE----------------EECCCC------SCEEEEEEE--TTEE----EEEETTSCEEEEETTTCCEEEEECS
T ss_pred ----CEEE----------------EEcCCc------ccEEEEEEe--CCEE----EEEeCCCeEEEEECCCCcEEEEEcc
Confidence 0000 000000 000000111 1111 1356799999999999999999986
Q ss_pred ---CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEcc
Q 003221 368 ---HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSH 441 (838)
Q Consensus 368 ---H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~---RG~t~a~I~sIaFSp 441 (838)
|..+|.+++|+ +.+|++++.||+ |+|||+.. | +.+..+. .+.+...|++++|+|
T Consensus 358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~-v~iwd~~~-------~----------~~~~~~~~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN--KNFVITSSDDGT-VKLWDLKT-------G----------EFIRNLVTLESGGSGGVVWRIRASN 417 (445)
T ss_dssp TTSCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTT-------C----------CEEEEEEECTTGGGTCEEEEEEECS
T ss_pred CCCCCCCEEEEEEC--CCEEEEEeCCCe-EEEEECCC-------C----------ceeeeeeccccCCCCceEEEEEecC
Confidence 89999999996 689999999775 99999964 3 3555552 234556899999999
Q ss_pred CCCEEEEEeCCCe----EEEEecCCC
Q 003221 442 YSQWIAIVSSKGT----CHVFVLSPF 463 (838)
Q Consensus 442 Dg~~Las~S~dGT----VhIw~l~~~ 463 (838)
|+.+||+++.||+ ++||+++..
T Consensus 418 ~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 418 TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999999998 999999763
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.1e-20 Score=197.27 Aligned_cols=276 Identities=11% Similarity=0.085 Sum_probs=172.3
Q ss_pred Ce-EEEEEecCc-EEEEEc----cCCCc------eeEEeee----------ccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 75 KQ-VLLLGYQNG-FQVLDV----EDASN------FNELVSK----------RDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 75 ~~-vL~lG~~~G-~qVWdv----~~~g~------v~ells~----------hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
++ +|++|..+| ++|||+ .. +. ....+.. |.++|.++++.|+. .+
T Consensus 57 ~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------------~~ 122 (425)
T 1r5m_A 57 DESILAYGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG-------------NS 122 (425)
T ss_dssp CTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS-------------SE
T ss_pred CCcEEEEecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEcCCC-------------CE
Confidence 44 777776655 999999 54 33 2333333 67799999999752 36
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEEE-
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVG- 208 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV~- 208 (838)
|++.+. .++|++|| .+++.+..+. +...|.+++++++ +|+++
T Consensus 123 l~~~~~---------------------------------dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (425)
T 1r5m_A 123 IVTGVE---------------------------------NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMD 168 (425)
T ss_dssp EEEEET---------------------------------TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEeC---------------------------------CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEe
Confidence 655331 26799999 6788888886 4579999999875 55554
Q ss_pred eCCeEEEEECCCCceeeEEeecCCcccCCC--CccccccccceeEEcc-cEEEEeC--CCceeecCCCCCCcccCCCCCC
Q 003221 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQ--GAVGINVGYGPMAVGP-RWLAYAS--NTLLLSNSGRLSPQNLTPSGVS 283 (838)
Q Consensus 209 l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~--~~~~~~~g~g~~Alsp-r~LAys~--~~~~l~~~G~vs~q~l~~~~~s 283 (838)
.++.|++||+.+++.+..+..+..+..... ...+.......+++.+ ..++... ..+.+|+......
T Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~--------- 239 (425)
T 1r5m_A 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP--------- 239 (425)
T ss_dssp TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC---------
T ss_pred cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce---------
Confidence 467899999999988877654332100000 0000000012233333 2233222 2344555311000
Q ss_pred CCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEE
Q 003221 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (838)
Q Consensus 284 ~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~ 363 (838)
+. .+..+ ......+.+++..+.+. .+..+|.|+|||+.+++.+.
T Consensus 240 ----------~~----------------~~~~~------~~~i~~~~~~~~~~~l~----~~~~d~~i~i~d~~~~~~~~ 283 (425)
T 1r5m_A 240 ----------TG----------------KLIGH------HGPISVLEFNDTNKLLL----SASDDGTLRIWHGGNGNSQN 283 (425)
T ss_dssp ----------SE----------------EECCC------SSCEEEEEEETTTTEEE----EEETTSCEEEECSSSBSCSE
T ss_pred ----------ee----------------eeccC------CCceEEEEECCCCCEEE----EEcCCCEEEEEECCCCccce
Confidence 00 00000 00000111111122222 35678999999999999999
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 364 ~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
.+.+|..+|.+++|+|+| +|++++.+|. |+|||+.. + ..+..+. + +...|.+++|+||+
T Consensus 284 ~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~-------~----------~~~~~~~-~-~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 284 CFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQ-------N----------TLLALSI-V-DGVPIFAGRISQDG 342 (425)
T ss_dssp EECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTT-------T----------EEEEEEE-C-TTCCEEEEEECTTS
T ss_pred EecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCC-------C----------cEeEecc-c-CCccEEEEEEcCCC
Confidence 999999999999999999 9999999765 99999954 2 4555554 3 23479999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCC
Q 003221 444 QWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l~~~g 464 (838)
++|++++.||+|+||++....
T Consensus 343 ~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SEEEEEETTSCEEEEECHHHH
T ss_pred CEEEEEECCCeEEEEECCCCc
Confidence 999999999999999997543
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.86 E-value=7.6e-20 Score=193.18 Aligned_cols=267 Identities=15% Similarity=0.136 Sum_probs=170.2
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLL 133 (838)
+++.|.-+.|.. +...++.|++|..+| ++|||+.........+..|.++|.++.+.|.-. |.....+|
T Consensus 64 ~~~~v~~~~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~s~~~~~l 132 (357)
T 3i2n_A 64 KAKPIKCGTFGA----TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG-------IGEGAPEI 132 (357)
T ss_dssp ESSCEEEEECTT----CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG-------CC-CCCEE
T ss_pred ccCcEEEEEEcC----CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccc-------cCCCccEE
Confidence 344555555543 111145666666554 999999754436677888999999998876311 33334566
Q ss_pred EEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe-EEEEEeCC-----CcEEEEE----eCC-
Q 003221 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRFR-----SSVCMVR----CSP- 202 (838)
Q Consensus 134 avV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~-~V~tL~f~-----s~V~sV~----~s~- 202 (838)
+..+. +++|++||+++++ .+..+... ..|.++. +++
T Consensus 133 ~~~~~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 133 VTGSR---------------------------------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE 179 (357)
T ss_dssp EEEET---------------------------------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred EEEeC---------------------------------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC
Confidence 65331 2679999999987 67777542 3788888 444
Q ss_pred -CeEEEEeC-CeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCC
Q 003221 203 -RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (838)
Q Consensus 203 -~iLaV~l~-~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~ 280 (838)
++|+++.. +.|++||+.+++.... ..+..+ ... +++.+..
T Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~-------------v~~-------~~~~~~~----------------- 221 (357)
T 3i2n_A 180 ERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG-------------VCS-------LEFDRKD----------------- 221 (357)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEE-EECSSC-------------EEE-------EEESCSS-----------------
T ss_pred CCEEEEEccCCeEEEEECccCceeee-cCCCCc-------------eEE-------EEcCCCC-----------------
Confidence 46777664 6899999999876443 222221 112 2332200
Q ss_pred CCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc
Q 003221 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (838)
Q Consensus 281 ~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~ 360 (838)
..+..++ .+..+|.|++||+.+++
T Consensus 222 --------~~~~~l~------------------------------------------------~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 222 --------ISMNKLV------------------------------------------------ATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp --------SSCCEEE------------------------------------------------EEESTTEEEEEEEEEEE
T ss_pred --------CCCCEEE------------------------------------------------EECCCCeEEEEeCcCCC
Confidence 0000000 23468999999998766
Q ss_pred EEEEec-----cCCCCeEEEEECCCCC-EEEEEecCCCEEEEEecCCCcccC---CCCCCccccCCcceEEEEEeccccc
Q 003221 361 IISQFK-----AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRS---GSGNHKYDWNSSHVHLYKLHRGITS 431 (838)
Q Consensus 361 ~v~~~~-----aH~spIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~---~~G~~~~~~~~~~~~l~~L~RG~t~ 431 (838)
.+..+. +|..+|.+++|+|+|. +|++++.||. |+|||+....... ..|. ..........+..+. + +.
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-~-~~ 321 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGI-EMGVAGSVSLLQNVT-L-ST 321 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSC-CCCCCCEEEEEEEEE-C-CS
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCC-ccccccccceeeccc-c-CC
Confidence 544444 9999999999999999 8999999775 9999996421000 0000 000001123455553 3 34
Q ss_pred ccEEEEEEccCCCEEE-EEeCCCeEEEEecCCC
Q 003221 432 ATIQDICFSHYSQWIA-IVSSKGTCHVFVLSPF 463 (838)
Q Consensus 432 a~I~sIaFSpDg~~La-s~S~dGTVhIw~l~~~ 463 (838)
..|.+++|+||+++|+ +++.||+|+||++...
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 5799999999999999 7999999999999754
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.86 E-value=6.2e-19 Score=195.64 Aligned_cols=253 Identities=17% Similarity=0.223 Sum_probs=172.4
Q ss_pred CCCCCc-EEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 53 EDLKDQ-VTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 53 ~~~~d~-v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
.++.+. +.++.||. ..|++|..+ .++|||+. .++....+..|.++|.++++.|+.
T Consensus 118 ~~h~~~v~~~~~~~~---------~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h~~~V~~l~~~~~~------------- 174 (464)
T 3v7d_B 118 RGHMTSVITCLQFED---------NYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHGG------------- 174 (464)
T ss_dssp ECCSSSCEEEEEEET---------TEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECSTT-------------
T ss_pred cCCCCCcEEEEEECC---------CEEEEEcCCCcEEEEECC-CCcEEEEEeCCCcCEEEEEEcCCC-------------
Confidence 455665 46666653 356666655 59999995 466777788999999999998641
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCC----CeE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP----RIV 205 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~----~iL 205 (838)
+|+..+. +++|++||+++++.+..+. +.+.|.++++++ ++|
T Consensus 175 -~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l 220 (464)
T 3v7d_B 175 -ILVSGST---------------------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 220 (464)
T ss_dssp -EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEE
T ss_pred -EEEEEeC---------------------------------CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEE
Confidence 4544221 2689999999999999997 567999998863 355
Q ss_pred EEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc----cEEEEeCCCceeecCCCCCCcccCCC
Q 003221 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPS 280 (838)
Q Consensus 206 aV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp----r~LAys~~~~~l~~~G~vs~q~l~~~ 280 (838)
+++. ++.|++||+.+.+.......... ...+...+ ..+.... |+.
T Consensus 221 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~--------~~~-------- 270 (464)
T 3v7d_B 221 VTGSRDNTLHVWKLPKESSVPDHGEEHD--------------YPLVFHTPEENPYFVGVLR--------GHM-------- 270 (464)
T ss_dssp EEEETTSCEEEEECCCCCCC------CC--------------SSEEESCGGGCTTEEEEEC--------CCS--------
T ss_pred EEEcCCCcEEEeeCCCCcccccccccCC--------------cceEeeccCCCeEEEEEcc--------Ccc--------
Confidence 5544 67899999998765443221110 00000000 0000000 000
Q ss_pred CCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc
Q 003221 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (838)
Q Consensus 281 ~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~ 360 (838)
..+ ..+++ ....+. .+..+|.|++||+.+++
T Consensus 271 -----------~~v--------------------------------~~~~~--~~~~l~----~~~~d~~i~vwd~~~~~ 301 (464)
T 3v7d_B 271 -----------ASV--------------------------------RTVSG--HGNIVV----SGSYDNTLIVWDVAQMK 301 (464)
T ss_dssp -----------SCE--------------------------------EEEEE--ETTEEE----EEETTSCEEEEETTTTE
T ss_pred -----------ceE--------------------------------EEEcC--CCCEEE----EEeCCCeEEEEECCCCc
Confidence 000 00000 011111 35678999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFS 440 (838)
.+..+.+|..+|.+++|+|+|.+|++++.||+ |+|||+.. | ..+.++. + +...|.+++|+
T Consensus 302 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~~ 361 (464)
T 3v7d_B 302 CLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN-------G----------ELMYTLQ-G-HTALVGLLRLS 361 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEEC
T ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCC-------C----------cEEEEEe-C-CCCcEEEEEEc
Confidence 99999999999999999999999999999876 99999954 3 4666664 4 34579999998
Q ss_pred cCCCEEEEEeCCCeEEEEecCCC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~~ 463 (838)
+++|++++.||+|+||++...
T Consensus 362 --~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 362 --DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp --SSEEEEEETTSEEEEEETTTC
T ss_pred --CCEEEEEeCCCcEEEEECCCC
Confidence 589999999999999999764
No 57
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.86 E-value=2.5e-19 Score=211.41 Aligned_cols=240 Identities=16% Similarity=0.190 Sum_probs=167.6
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
.+|.+.|..+.|.. + ++.|++|..+| ++|||+. .+.....+..|.++|.++++.|+. .
T Consensus 427 ~~h~~~v~~v~~s~----~---g~~l~sgs~Dg~v~vwd~~-~~~~~~~~~~h~~~v~~~~~s~~~-------------~ 485 (694)
T 3dm0_A 427 TGHSHFVEDVVLSS----D---GQFALSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDN-------------R 485 (694)
T ss_dssp ECCSSCEEEEEECT----T---SSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEECTTS-------------S
T ss_pred cCCCCcEEEEEECC----C---CCEEEEEeCCCcEEEEECC-CCcceeEEeCCCCCEEEEEEeCCC-------------C
Confidence 35666777777754 2 45677776655 9999995 466777788899999999999752 2
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCcEEEEEeCCC----
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR---- 203 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~----f~s~V~sV~~s~~---- 203 (838)
+|+..+. +++|++||........... +...|.+++++++
T Consensus 486 ~l~s~s~---------------------------------D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 486 QIVSASR---------------------------------DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp CEEEEET---------------------------------TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEEEeC---------------------------------CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 4554332 2789999987654433322 3457999999874
Q ss_pred eEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCC
Q 003221 204 IVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (838)
Q Consensus 204 iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~ 282 (838)
.|++ +.++.|++||+.+.+...++..|..+ ... |++.++.
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~-------v~~spdg------------------- 573 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGY-------------VST-------VAVSPDG------------------- 573 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------EEE-------EEECTTS-------------------
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEE-------EEEeCCC-------------------
Confidence 4555 44678999999999888777665442 122 2333211
Q ss_pred CCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE
Q 003221 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (838)
Q Consensus 283 s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v 362 (838)
.+++ +++.||.|+|||+.+++.+
T Consensus 574 ---------~~l~------------------------------------------------sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 574 ---------SLCA------------------------------------------------SGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp ---------SEEE------------------------------------------------EEETTSBCEEEETTTTEEE
T ss_pred ---------CEEE------------------------------------------------EEeCCCeEEEEECCCCceE
Confidence 1110 2456899999999999988
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec------------c--
Q 003221 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------------G-- 428 (838)
Q Consensus 363 ~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R------------G-- 428 (838)
..+..| ..|.+++|+|+|.+|++++. + .|+|||+... ..+.++.. |
T Consensus 597 ~~~~~~-~~v~~~~~sp~~~~l~~~~~-~-~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 597 YSLEAN-SVIHALCFSPNRYWLCAATE-H-GIKIWDLESK-----------------SIVEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp ECCBCS-SCEEEEEECSSSSEEEEEET-T-EEEEEETTTT-----------------EEEEEECCCCC------------
T ss_pred EEecCC-CcEEEEEEcCCCcEEEEEcC-C-CEEEEECCCC-----------------CChhhhccccccccccccccccc
Confidence 887654 68999999999999998875 3 4999999642 23333211 0
Q ss_pred -c--ccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 429 -I--TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 429 -~--t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
. +...|.+++|||||++|++++.||+|+||++..
T Consensus 657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 0 011378999999999999999999999999865
No 58
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.85 E-value=3.9e-19 Score=197.14 Aligned_cols=231 Identities=16% Similarity=0.231 Sum_probs=171.4
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
.++...|....||. +.|++|..+ .++|||+. .+++...+..|.++|.++++. + .
T Consensus 130 ~~~~~~v~~~~~d~---------~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~-------------~--~ 184 (435)
T 1p22_A 130 SETSKGVYCLQYDD---------QKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD-------------E--R 184 (435)
T ss_dssp CSSCCCEEEEECCS---------SEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEECC-------------S--S
T ss_pred cCCCCcEEEEEECC---------CEEEEEeCCCeEEEEeCC-CCeEEEEEcCCCCcEEEEEEC-------------C--C
Confidence 34566788887743 355555555 59999995 577778888999999998863 1 2
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCCeEEEEe-
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPRIVAVGL- 209 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~iLaV~l- 209 (838)
+|++.+. +++|++||+++++.+.++.. ...|.+++++++.|+++.
T Consensus 185 ~l~sg~~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 231 (435)
T 1p22_A 185 VIITGSS---------------------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231 (435)
T ss_dssp EEEEEET---------------------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred EEEEEcC---------------------------------CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence 5654321 26899999999999999865 468999999998777766
Q ss_pred CCeEEEEECCCCceee---EEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 210 ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 210 ~~~I~IwD~~t~e~l~---tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
++.|++||+.+++... .+..+..+ .. .+++.++
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------v~-------~~~~~~~------------------------ 267 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAA-------------VN-------VVDFDDK------------------------ 267 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSC-------------EE-------EEEEETT------------------------
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCc-------------EE-------EEEeCCC------------------------
Confidence 5689999999877542 22222221 11 1222110
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~ 366 (838)
.+ ..+..+|.|+|||+.+++.+..+.
T Consensus 268 ------~l------------------------------------------------~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 268 ------YI------------------------------------------------VSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp ------EE------------------------------------------------EEEETTSEEEEEETTTCCEEEEEE
T ss_pred ------EE------------------------------------------------EEEeCCCeEEEEECCcCcEEEEEc
Confidence 00 023468999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (838)
+|..+|.+++| +|.+|++++.||+ |+|||+.. | ..+..+. + +...|.+++| |+++|
T Consensus 294 ~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~--~~~~l 349 (435)
T 1p22_A 294 GHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIEC-------G----------ACLRVLE-G-HEELVRCIRF--DNKRI 349 (435)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCC-------C----------CEEEEEe-C-CcCcEEEEEe--cCCEE
Confidence 99999999999 5789999999876 99999964 3 4666664 4 3457999999 89999
Q ss_pred EEEeCCCeEEEEecCCC
Q 003221 447 AIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 447 as~S~dGTVhIw~l~~~ 463 (838)
++++.||+|+||++...
T Consensus 350 ~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEEETTSCEEEEEHHHH
T ss_pred EEEeCCCcEEEEECCCC
Confidence 99999999999998654
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.85 E-value=7.1e-20 Score=193.66 Aligned_cols=287 Identities=11% Similarity=-0.005 Sum_probs=173.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEEeee-----ccCcEEEEEEecCCCCCCCCCCcc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSK-----RDGPVSFLQMQPFPVKDDGCEGFR 127 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~v~ells~-----hdg~V~~l~~lP~p~~~~~~d~F~ 127 (838)
+++.+.|.-+.|.... ......+++++.++.++|||+.. ++....+.. |++.|.++++.|+..
T Consensus 15 ~~h~~~v~~i~~~p~~--~~~~~~~~~~~~~~~v~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------- 82 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHS--KEGDPLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENFYTCAWTYDSN--------- 82 (366)
T ss_dssp CTTCSCEEEEEECTTC--CTTSCEEEEEEETTEEEEEEECG-GGCEEEEEEEECSCTTCCEEEEEEEECTT---------
T ss_pred cCCCCceEEEEEeccc--CCCCceEEEECCCCEEEEEEcCC-CcEEEeeeeccccCCCCcEEEEEeccCCC---------
Confidence 5788999999997520 11235677777788899999965 444444443 447799999998631
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCC---C
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---R 203 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~---~ 203 (838)
....+|++.+. +++|++||+.+++.+..+. +...|.++++++ +
T Consensus 83 ~~~~~l~~~~~---------------------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 129 (366)
T 3k26_A 83 TSHPLLAVAGS---------------------------------RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN 129 (366)
T ss_dssp TCCEEEEEEET---------------------------------TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT
T ss_pred CCCCEEEEecC---------------------------------CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC
Confidence 11236654321 2789999999999999997 567999999987 3
Q ss_pred eEEEEe-CCeEEEEECCCCceeeEEe---ecCCcccCCCCccccccccceeEEcc--cEEEEeC--CCceeecCCCCCCc
Q 003221 204 IVAVGL-ATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQ 275 (838)
Q Consensus 204 iLaV~l-~~~I~IwD~~t~e~l~tL~---t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~--~~~~l~~~G~vs~q 275 (838)
+|+++. ++.|++||+.+++.+..+. .+..+ ...+++++ ++|+.++ ..+.+|+.-..
T Consensus 130 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--- 193 (366)
T 3k26_A 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE-------------VLSADYDLLGEKIMSCGMDHSLKLWRINSK--- 193 (366)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEESCSH---
T ss_pred EEEEEeCCCeEEEEEeecCeEEEEecccccccCc-------------eeEEEECCCCCEEEEecCCCCEEEEECCCC---
Confidence 666655 6689999999998877763 22221 33455544 3444332 12334442000
Q ss_pred ccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEE
Q 003221 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD 355 (838)
Q Consensus 276 ~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwD 355 (838)
+....+... + ...|++ .... ......
T Consensus 194 ------------------------~~~~~~~~~----~-----~~~~~~-----------~~~~--------~~~~~~-- 219 (366)
T 3k26_A 194 ------------------------RMMNAIKES----Y-----DYNPNK-----------TNRP--------FISQKI-- 219 (366)
T ss_dssp ------------------------HHHHHHHHH----H-----TCCGGG-----------CSSC--------CCCEEE--
T ss_pred ------------------------cccccccee----E-----EecCCC-----------Cccc--------ccceee--
Confidence 000000000 0 000000 0000 000000
Q ss_pred CCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEE
Q 003221 356 FVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQ 435 (838)
Q Consensus 356 l~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~ 435 (838)
.......+.+|..+|.+++|+ |.+|++++.+|. |++||+......- ............+..+. + +...|+
T Consensus 220 --~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~-i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~~~~v~ 289 (366)
T 3k26_A 220 --HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA-IVCWKPGKMEDDI---DKIKPSESNVTILGRFD-Y-SQCDIW 289 (366)
T ss_dssp --CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE-EEEEEESSTTCCG---GGCCTTCCCEEEEEEEE-C-SSCCSS
T ss_pred --ccCccccccCCcceEEEEEEc--CCEEEEEecCCE-EEEEeCCCccccc---cccccCCcchheecccc-c-cCCcEE
Confidence 011234555699999999999 789999999765 9999986421000 00000001112344443 3 334699
Q ss_pred EEEEccC--CCEEEEEeCCCeEEEEecCCCC
Q 003221 436 DICFSHY--SQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 436 sIaFSpD--g~~Las~S~dGTVhIw~l~~~g 464 (838)
+++|+|| +++|++++.||+|+||++....
T Consensus 290 ~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp CCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 9999999 9999999999999999997654
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.85 E-value=2.8e-19 Score=190.35 Aligned_cols=241 Identities=10% Similarity=0.120 Sum_probs=170.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCc--eeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~g~--v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
+++.|.-+.|.. + +++|++|.. +.++|||++. ++ ....+..|.++|.++++.|+. .
T Consensus 7 ~~~~i~~~~~s~----~---~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~-------------~ 65 (372)
T 1k8k_C 7 LVEPISCHAWNK----D---RTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS-------------N 65 (372)
T ss_dssp CSSCCCEEEECT----T---SSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTT-------------T
T ss_pred cCCCeEEEEECC----C---CCEEEEEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEeCCC-------------C
Confidence 566777778865 3 467777755 4599999964 54 556677899999999999852 3
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEeCCC--eEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSPR--IVA 206 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~---f~s~V~sV~~s~~--iLa 206 (838)
+|++.+. +++|++||+++++....+. +...|.+++++++ +|+
T Consensus 66 ~l~~~~~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 112 (372)
T 1k8k_C 66 RIVTCGT---------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 112 (372)
T ss_dssp EEEEEET---------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEcC---------------------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEE
Confidence 5654331 2679999999998766654 4568999999875 677
Q ss_pred EEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCC
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~s 285 (838)
++. ++.|++||+.+.+....+.....+. .. .... |+|.++.
T Consensus 113 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~------~~---~i~~-------~~~~~~~---------------------- 154 (372)
T 1k8k_C 113 VGSGSRVISICYFEQENDWWVCKHIKKPI------RS---TVLS-------LDWHPNS---------------------- 154 (372)
T ss_dssp EEETTSSEEEEEEETTTTEEEEEEECTTC------CS---CEEE-------EEECTTS----------------------
T ss_pred EEeCCCEEEEEEecCCCcceeeeeeeccc------CC---CeeE-------EEEcCCC----------------------
Confidence 665 5689999998876432222111100 00 0112 2222210
Q ss_pred CCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEEC---------
Q 003221 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF--------- 356 (838)
Q Consensus 286 tsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl--------- 356 (838)
.++ . .+..+|.|++||+
T Consensus 155 ------~~l--------------------------------------------~----~~~~dg~i~~~d~~~~~~~~~~ 180 (372)
T 1k8k_C 155 ------VLL--------------------------------------------A----AGSCDFKCRIFSAYIKEVEERP 180 (372)
T ss_dssp ------SEE--------------------------------------------E----EEETTSCEEEEECCCTTTSCCC
T ss_pred ------CEE--------------------------------------------E----EEcCCCCEEEEEcccccccccc
Confidence 000 0 1345778888884
Q ss_pred ---------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 357 ---------VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 357 ---------~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
..++.+..+.+|..+|.+++|+|+|.+|++++.||. |++||+.. + ..+..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~-------~----------~~~~~~~- 241 (372)
T 1k8k_C 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADK-------K----------MAVATLA- 241 (372)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGG-------T----------TEEEEEE-
T ss_pred cccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCC-------C----------ceeEEEc-
Confidence 467788999999999999999999999999999765 99999964 2 3666664
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
+ +...|.+++|+||+++|+++ .|++|+||++..
T Consensus 242 ~-~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 242 S-ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp C-SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred c-CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 3 34479999999999999888 899999999976
No 61
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.85 E-value=9.7e-21 Score=205.17 Aligned_cols=262 Identities=13% Similarity=0.102 Sum_probs=169.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------ceeE--EeeeccCcEEEEEEecCCCCCCCCC
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNE--LVSKRDGPVSFLQMQPFPVKDDGCE 124 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g------~v~e--lls~hdg~V~~l~~lP~p~~~~~~d 124 (838)
.+++.|..+.|.. + .+++|++|..+| ++|||+.... .... .+..|.++|.++++.|+.
T Consensus 111 ~h~~~v~~~~~~~----~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 177 (416)
T 2pm9_A 111 NHSSSVKTVKFNA----K--QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL------- 177 (416)
T ss_dssp CSSSCCCEEEECS----S--STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC-------
T ss_pred CCccceEEEEEcC----C--CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC-------
Confidence 3555566666643 1 145666666654 9999996543 2222 235678899999999751
Q ss_pred CcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-------CCcEEE
Q 003221 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-------RSSVCM 197 (838)
Q Consensus 125 ~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-------~s~V~s 197 (838)
..+|++ ++ .+++|++||+++++.+..+.. ...|.+
T Consensus 178 -----~~~l~~-~~--------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 178 -----AHVFAS-AG--------------------------------SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp -----TTEEEE-ES--------------------------------SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred -----CcEEEE-Ec--------------------------------CCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence 135544 21 126799999999999999987 568999
Q ss_pred EEeCCC---eEEEEeCC----eEEEEECCCCc-eeeEEe-ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeec
Q 003221 198 VRCSPR---IVAVGLAT----QIYCFDALTLE-NKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN 268 (838)
Q Consensus 198 V~~s~~---iLaV~l~~----~I~IwD~~t~e-~l~tL~-t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~ 268 (838)
++++++ +|+++..+ .|++||+.+++ .+..+. .+..+ . ..++|.+.
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~-------------v-------~~~~~s~~------ 273 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG-------------I-------LSLDWCHQ------ 273 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC-------------E-------EEEEECSS------
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc-------------e-------eEEEeCCC------
Confidence 999875 67776655 89999999863 333332 22221 1 12233220
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCC
Q 003221 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (838)
Q Consensus 269 ~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~ 348 (838)
++.+++ .+..+
T Consensus 274 ---------------------~~~~l~------------------------------------------------s~~~d 284 (416)
T 2pm9_A 274 ---------------------DEHLLL------------------------------------------------SSGRD 284 (416)
T ss_dssp ---------------------CSSCEE------------------------------------------------EEESS
T ss_pred ---------------------CCCeEE------------------------------------------------EEeCC
Confidence 001110 23568
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE---
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK--- 424 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~--- 424 (838)
|.|+|||+.+++.+..+.+|..+|.+++|+|+| .+||+++.||+ |+|||+...............-......++.
T Consensus 285 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (416)
T 2pm9_A 285 NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQTLQNLTNTLDEQETETKQQESETDFWNNVS 363 (416)
T ss_dssp SEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEESCCCCCSSCC-------------------
T ss_pred CCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEEccCCCCCcccccccccccCCccccccccc
Confidence 999999999999999999999999999999999 89999999765 9999996421000000000000000000000
Q ss_pred --------------EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 425 --------------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 425 --------------L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
..+. +...+.+++|||||++||+++.||+|+||++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 364 REESKEKPSVFHLQAPTW-YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---CCSCCCSSCCCCCST-TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccCCcc-ccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0000 2345778999999999999999999999999753
No 62
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.85 E-value=6.7e-20 Score=201.82 Aligned_cols=254 Identities=13% Similarity=0.188 Sum_probs=173.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCceeEEee-eccCcEEEEEEecCCCCCCCCCCcc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASNFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR 127 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~---~g~v~ells-~hdg~V~~l~~lP~p~~~~~~d~F~ 127 (838)
+.|.+.|.-+.|..- .++.|++|..+| ++|||+.. .......+. .|.++|.+|++.|+.
T Consensus 60 ~~h~~~V~~~~~s~~------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------- 123 (437)
T 3gre_A 60 ENEPNSITSSAVSPG------ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF---------- 123 (437)
T ss_dssp TTTTSCEEEEEEECS------SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS----------
T ss_pred cCCCCceEEEEECCC------CCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC----------
Confidence 667889999988651 145677776665 99999964 211211222 588999999999752
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECC---CCeEEEEEe-------------C
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---SHCYEHVLR-------------F 191 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~---tg~~V~tL~-------------f 191 (838)
.+|++.+. +++|++||+. +++.+..+. .
T Consensus 124 ---~~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (437)
T 3gre_A 124 ---DAFAVSSK---------------------------------DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK 167 (437)
T ss_dssp ---SEEEEEET---------------------------------TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred ---CEEEEEeC---------------------------------CCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence 35654331 3789999994 665555443 2
Q ss_pred CCcEEEEE--eC--CCeEEEEe-CCeEEEEECCCCceeeEEeec--CCcccCCCCccccccccceeEEcccEEEEeCCCc
Q 003221 192 RSSVCMVR--CS--PRIVAVGL-ATQIYCFDALTLENKFSVLTY--PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTL 264 (838)
Q Consensus 192 ~s~V~sV~--~s--~~iLaV~l-~~~I~IwD~~t~e~l~tL~t~--p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~ 264 (838)
...+.++. ++ .++|+++. ++.|++||+.+++.+.++..+ ..+ . ..|+|.++.
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-------------v-------~~~~~s~~~- 226 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA-------------V-------SSICIDEEC- 226 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC-------------E-------EEEEECTTS-
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc-------------e-------EEEEECCCC-
Confidence 23455555 22 33666655 568999999999988887752 221 1 123333211
Q ss_pred eeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccc
Q 003221 265 LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 344 (838)
Q Consensus 265 ~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~ 344 (838)
.+++ .
T Consensus 227 ---------------------------~~l~------------------------------------------------s 231 (437)
T 3gre_A 227 ---------------------------CVLI------------------------------------------------L 231 (437)
T ss_dssp ---------------------------CEEE------------------------------------------------E
T ss_pred ---------------------------CEEE------------------------------------------------E
Confidence 0000 2
Q ss_pred cCCCceEEEEECCCCcEEEEec-cCCCCeEEE----EECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 345 MDNAGIVVVKDFVTRAIISQFK-AHTSPISAL----CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~-aH~spIsaL----aFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
+..+|.|+|||+.+++.+..+. .|..+|.+| +|+|+|.+||+++.||+ |+|||+.. +
T Consensus 232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~-------~---------- 293 (437)
T 3gre_A 232 GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVK-------G---------- 293 (437)
T ss_dssp EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTT-------T----------
T ss_pred EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCC-------C----------
Confidence 3568999999999999999887 888999999 55567999999999775 99999964 2
Q ss_pred eEEEEEec-----------------------c-cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 420 VHLYKLHR-----------------------G-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 420 ~~l~~L~R-----------------------G-~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
..+..+.. | .+...|.+++|+ |+++|++++.||+|+||++........+..|.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 23444431 1 133469999999 88999999999999999998776666666663
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.85 E-value=1.1e-19 Score=199.13 Aligned_cols=259 Identities=10% Similarity=0.130 Sum_probs=168.8
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----------eeEEeeecc------------CcEEEE
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----------FNELVSKRD------------GPVSFL 111 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~----------v~ells~hd------------g~V~~l 111 (838)
+.+.|.-+.|+. + ++.|++|..+| ++|||++.... +...+..|. ++|..+
T Consensus 27 ~~~~V~~v~~s~----~---g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 27 EADIISTVEFNH----S---GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGGSEEEEEECS----S---SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccCcEEEEEECC----C---CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 567888888876 3 56788887766 99999965331 455677787 889999
Q ss_pred EEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEE-----
Q 003221 112 QMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE----- 186 (838)
Q Consensus 112 ~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V----- 186 (838)
++.|+. ...+|++.+. +++|++||+.+++..
T Consensus 100 ~~~~~~-----------~~~~l~s~s~---------------------------------d~~i~iw~~~~~~~~~~~~~ 135 (447)
T 3dw8_B 100 RWLPQK-----------NAAQFLLSTN---------------------------------DKTIKLWKISERDKRPEGYN 135 (447)
T ss_dssp EECCCC-----------SSSEEEEEEC---------------------------------SSCEEEEEEEEEEEEEECCS
T ss_pred EEcCCC-----------CcceEEEeCC---------------------------------CCeEEEEecccccCCcceec
Confidence 999852 1135554332 267999999875542
Q ss_pred ----------------------------------EEE--eCCCcEEEEEeCCC--eEEEEeCCeEEEEECCCCc-eeeEE
Q 003221 187 ----------------------------------HVL--RFRSSVCMVRCSPR--IVAVGLATQIYCFDALTLE-NKFSV 227 (838)
Q Consensus 187 ----------------------------------~tL--~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e-~l~tL 227 (838)
..+ .+...|.+++++++ +|+++.++.|++||+.+.. .+..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~ 215 (447)
T 3dw8_B 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIV 215 (447)
T ss_dssp CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEE
T ss_pred ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeee
Confidence 122 24568999999875 7888877899999999543 33322
Q ss_pred eecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhc
Q 003221 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (838)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~ 307 (838)
...+.. ..+. ...+ ..++|.++. ..++
T Consensus 216 ~~~~~~------~~~~---~~~v----~~~~~~p~~---------------------------~~~l------------- 242 (447)
T 3dw8_B 216 DIKPAN------MEEL---TEVI----TAAEFHPNS---------------------------CNTF------------- 242 (447)
T ss_dssp ECCCSS------GGGC---CCCE----EEEEECSSC---------------------------TTEE-------------
T ss_pred eccccc------cccc---Ccce----EEEEECCCC---------------------------CcEE-------------
Confidence 211110 0000 0000 223332210 0000
Q ss_pred cccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE----EEEeccCCC------------C
Q 003221 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTS------------P 371 (838)
Q Consensus 308 Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~----v~~~~aH~s------------p 371 (838)
+.+..+|.|+|||+.+++. +..+.+|.. +
T Consensus 243 -----------------------------------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 243 -----------------------------------VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp -----------------------------------EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred -----------------------------------EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence 0245689999999998886 788999886 9
Q ss_pred eEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccccc-----------c---cEEEE
Q 003221 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------A---TIQDI 437 (838)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~-----------a---~I~sI 437 (838)
|.+++|+|+|++|++++. | .|+|||+... + ..+..+. ++.. . .+.++
T Consensus 288 v~~~~~s~~g~~l~~~~~-~-~v~iwd~~~~------~----------~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~ 348 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-L-SVKVWDLNME------N----------RPVETYQ-VHEYLRSKLCSLYENDCIFDKFEC 348 (447)
T ss_dssp EEEEEECTTSSEEEEEES-S-EEEEEETTCC------S----------SCSCCEE-SCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred EEEEEECCCCCEEEEeeC-C-eEEEEeCCCC------c----------cccceee-ccccccccccccccccccccceEE
Confidence 999999999999999998 6 5999999531 1 1222332 2211 0 14459
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCCCCCccccccC
Q 003221 438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (838)
Q Consensus 438 aFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H 472 (838)
+|+||+++|++++.||+|+||++.... ...+..|
T Consensus 349 ~~s~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~ 382 (447)
T 3dw8_B 349 CWNGSDSVVMTGSYNNFFRMFDRNTKR-DITLEAS 382 (447)
T ss_dssp EECTTSSEEEEECSTTEEEEEETTTCC-EEEEECC
T ss_pred EECCCCCEEEEeccCCEEEEEEcCCCc-ceeeeec
Confidence 999999999999999999999997643 3344444
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.84 E-value=2.2e-18 Score=214.96 Aligned_cols=347 Identities=14% Similarity=0.107 Sum_probs=218.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
.++++.|.-+.|.. + ++.|++|..+| ++|||+. .+.....+..|.++|.++++.|+. .
T Consensus 612 ~~h~~~v~~~~~s~----~---~~~l~s~~~d~~i~vw~~~-~~~~~~~~~~h~~~v~~~~~s~~~-------------~ 670 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQ----D---GQRIASCGADKTLQVFKAE-TGEKLLDIKAHEDEVLCCAFSSDD-------------S 670 (1249)
T ss_dssp CCCSSCEEEEEECT----T---SSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred ecccccEEEEEECC----C---CCEEEEEeCCCeEEEEECC-CCCEEEEeccCCCCEEEEEEecCC-------------C
Confidence 45778888888865 3 45777776665 9999995 466667778899999999999852 3
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC----eEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR----IVA 206 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~----iLa 206 (838)
+|++.+. +++|++||+.+++.+.++.. ...|.+++|+++ +++
T Consensus 671 ~l~s~~~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 717 (1249)
T 3sfz_A 671 YIATCSA---------------------------------DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717 (1249)
T ss_dssp EEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred EEEEEeC---------------------------------CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence 6665331 27899999999999999964 569999999873 566
Q ss_pred EEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCC--CceeecCCCC-CCcccC--
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRL-SPQNLT-- 278 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~--~~~l~~~G~v-s~q~l~-- 278 (838)
++. ++.|++||+.++++..++..|..+ ...+++++ ++|+.++. .+.+|+.... ....+.
T Consensus 718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 784 (1249)
T 3sfz_A 718 TGSNDFFLKLWDLNQKECRNTMFGHTNS-------------VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784 (1249)
T ss_dssp EEETTSCEEEEETTSSSEEEEECCCSSC-------------EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred EEeCCCeEEEEECCCcchhheecCCCCC-------------EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccc
Confidence 655 568999999999998888776553 44677776 67776543 4678875211 000000
Q ss_pred --------------CCCCCCCCCCCCCcceeeeehhh--hhhhhccccccccccccccCCCCCCCCccCCCccccccccc
Q 003221 279 --------------PSGVSPSTSPGGSSLVARYAMEH--SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 342 (838)
Q Consensus 279 --------------~~~~s~stsps~gslva~~A~ds--~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~ 342 (838)
....+...+|.+..+++. .... .+.+..+ +.+.... ....+......+++..+...
T Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~~~v~~~d~~~~--~~~~~~~--~~~~~~v~~~~~sp~~~~l~--- 856 (1249)
T 3sfz_A 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVLLFDIHTS--GLLAEIH--TGHHSTIQYCDFSPYDHLAV--- 856 (1249)
T ss_dssp CCC--------CCCCCBCCCCBCTTSSEEEEE-ETTEEEEEETTTC--CEEEEEE--CSSSSCCCEEEECSSTTEEE---
T ss_pred ccccccCCccccccceEEEEEECCCCCEEEEE-cCCcEEEEEecCC--CceeEEc--CCCCCceEEEEEcCCCCEEE---
Confidence 011122334444333321 1110 0111111 0000000 00111122222333333222
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCC-C--ccccC---
Q 003221 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN-H--KYDWN--- 416 (838)
Q Consensus 343 ~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~-~--~~~~~--- 416 (838)
.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|++|+|++.||+ |++|++........... . .....
T Consensus 857 -~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 857 -IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp -EECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred -EEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCC
Confidence 4567899999999999999999999999999999999999999999876 99999742100000000 0 00000
Q ss_pred --------CcceEEEEEecc----cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCCCC
Q 003221 417 --------SSHVHLYKLHRG----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 476 (838)
Q Consensus 417 --------~~~~~l~~L~RG----~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~~~ 476 (838)
.....+.....+ .....|.+++|+||++++++++.+|+|++|++........+..|...+
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 000001110000 113469999999999999999999999999998766656666775433
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.84 E-value=1.9e-19 Score=196.02 Aligned_cols=184 Identities=13% Similarity=0.118 Sum_probs=136.8
Q ss_pred CEEEEEECCCCeEEEEE-eCCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL-~f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
++|++||+++++.+..+ .+...|.+++++++ +|+++. ++.|++||+.+++.+.++..|..+ ..
T Consensus 119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~-------------v~ 185 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT-------------VT 185 (420)
T ss_dssp SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC-------------EE
T ss_pred CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc-------------EE
Confidence 67999999999998876 46679999999875 666655 568999999999988887765542 12
Q ss_pred eeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCC
Q 003221 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (838)
Q Consensus 249 ~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~ 328 (838)
.+ ++.++. .+++
T Consensus 186 ~~-------~~~~~~----------------------------~~l~--------------------------------- 197 (420)
T 3vl1_A 186 DI-------AIIDRG----------------------------RNVL--------------------------------- 197 (420)
T ss_dssp EE-------EEETTT----------------------------TEEE---------------------------------
T ss_pred EE-------EEcCCC----------------------------CEEE---------------------------------
Confidence 22 333211 0000
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC------------------------CCCeEEEEECCCCCEE
Q 003221 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH------------------------TSPISALCFDPSGTLL 384 (838)
Q Consensus 329 ~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH------------------------~spIsaLaFSPdGtlL 384 (838)
++..+|.|+|||+.+++.+..+..| ..+|.+++|+|+|++|
T Consensus 198 ---------------s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 198 ---------------SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp ---------------EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE
T ss_pred ---------------EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE
Confidence 1345788999999988888888753 3455556678999999
Q ss_pred EEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEecCCC
Q 003221 385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 385 ATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~Las~S~dGTVhIw~l~~~ 463 (838)
++++.+|+ |+|||+.. + ..+..+..+ +...|.+++|+||++ +|++++.||+|+||++...
T Consensus 263 ~~~~~dg~-i~i~d~~~-------~----------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 263 IAGHVSGV-ITVHNVFS-------K----------EQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp EEEETTSC-EEEEETTT-------C----------CEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred EEEcCCCe-EEEEECCC-------C----------ceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999887 99999964 2 356666544 345799999999999 9999999999999999875
Q ss_pred CC-cccccc
Q 003221 464 GG-DSGFQT 471 (838)
Q Consensus 464 gg-~~~~~~ 471 (838)
.. ...+..
T Consensus 324 ~~~~~~~~~ 332 (420)
T 3vl1_A 324 ECPVGEFLI 332 (420)
T ss_dssp TSCSEEEEE
T ss_pred cCchhhhhc
Confidence 44 233444
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.2e-19 Score=210.15 Aligned_cols=286 Identities=14% Similarity=0.076 Sum_probs=170.5
Q ss_pred EEEEEecC-cEEEEEccCCCcee----EEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCC
Q 003221 77 VLLLGYQN-GFQVLDVEDASNFN----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (838)
Q Consensus 77 vL~lG~~~-G~qVWdv~~~g~v~----ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~ 151 (838)
+|+.|..+ .++|||++. +++. ..+..|.+.|..|+|.|.+. +.....+||.++.
T Consensus 175 ~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~~~~~LAs~s~------------- 233 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVWDLKWHEGCH-------APHLVGCLSFVSQ------------- 233 (524)
T ss_dssp -------CEEEEEEEEET-TTCCEEEEEEEEECCCSEEEEEECSSCC-------CSSSSCEEEEEET-------------
T ss_pred hhccCCCCceEEEEEccC-CCCCceEEEEEEecCCcEEEEEECCCCC-------CCCCCceEEEEec-------------
Confidence 34444444 499999964 4432 33566778999999998631 1112247765442
Q ss_pred CCCCcccCccCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEe-CCCcEEEEEeCC-CeEEEEe-CCeEEEEE
Q 003221 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLR-FRSSVCMVRCSP-RIVAVGL-ATQIYCFD 217 (838)
Q Consensus 152 ~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~-----------V~tL~-f~s~V~sV~~s~-~iLaV~l-~~~I~IwD 217 (838)
+++|+|||+.+++. ..++. +...|.+++|++ +.|++|. ++.|++||
T Consensus 234 --------------------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD 293 (524)
T 2j04_B 234 --------------------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFD 293 (524)
T ss_dssp --------------------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred --------------------CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEE
Confidence 26899999987642 12444 346899999976 4666655 57899999
Q ss_pred CCCCce-eeEEeecCCcccCCCCcccccccccee--EEcc---cEEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCC
Q 003221 218 ALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPM--AVGP---RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (838)
Q Consensus 218 ~~t~e~-l~tL~t~p~p~~~~~~~~~~~~g~g~~--Alsp---r~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps 289 (838)
+.+++. ..++..|..+ ...+ ++++ .+||.++. .+.+|+.-.. +
T Consensus 294 ~~~~~~~~~~~~~H~~~-------------V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~--~-------------- 344 (524)
T 2j04_B 294 LTDPEVPSFYDQVHDSY-------------ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI--A-------------- 344 (524)
T ss_dssp TTBCSSCSEEEECSSSC-------------EEEEEEECCTTSCCEEEEEETTSEEEEECGGGH--H--------------
T ss_pred CCCCCCceEEeeccccc-------------EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC--C--------------
Confidence 998754 3445556543 2334 3343 46676543 4667874110 0
Q ss_pred CCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC
Q 003221 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT 369 (838)
Q Consensus 290 ~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~ 369 (838)
. .+++.++. ..+......+++....+. .++.+++|+|||+.++..+.++.+|.
T Consensus 345 --------------~-----~~~~~~~~----~~~~v~~v~fsp~~~~l~----s~~~d~tv~lwd~~~~~~~~~l~gH~ 397 (524)
T 2j04_B 345 --------------T-----TKTTVSRF----RGSNLVPVVYCPQIYSYI----YSDGASSLRAVPSRAAFAVHPLVSRE 397 (524)
T ss_dssp --------------H-----HCEEEEEC----SCCSCCCEEEETTTTEEE----EECSSSEEEEEETTCTTCCEEEEECS
T ss_pred --------------c-----cccccccc----ccCcccceEeCCCcCeEE----EeCCCCcEEEEECcccccceeeecCC
Confidence 0 01111110 101111222232222222 35678899999999998888899999
Q ss_pred CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCC--------C-ccccCC------------------cceEE
Q 003221 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN--------H-KYDWNS------------------SHVHL 422 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~--------~-~~~~~~------------------~~~~l 422 (838)
.+|.+|+|+|+|++||+|+.||+ |+|||+.........+. . ...+++ ....+
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~ 476 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSK 476 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--------
T ss_pred CceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcce
Confidence 99999999999999999999775 99999743211110000 0 011111 11233
Q ss_pred EEEecccccccEEEEEEccCC---CEEEEEeCCCeEEEEecCC
Q 003221 423 YKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg---~~Las~S~dGTVhIw~l~~ 462 (838)
.+| +|+ ...|++|+|+||+ .+||+|+.+|+|+||++.-
T Consensus 477 ~~l-~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 477 AKI-DAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eee-cCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 334 343 3469999999995 4999999999999999864
No 67
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.84 E-value=2.4e-18 Score=190.86 Aligned_cols=259 Identities=14% Similarity=0.124 Sum_probs=183.2
Q ss_pred eEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 76 ~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
+.|++|..+ .++|||+. .+++...+..|.++|.++.+.+ .+|+..+.
T Consensus 130 ~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~---------------~~l~s~~~---------------- 177 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRD---------------NIIISGST---------------- 177 (445)
T ss_dssp TEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEET---------------TEEEEEET----------------
T ss_pred CEEEEEECCCcEEEEECC-CCcEEEEEcCCCCCEEEEEecC---------------CEEEEEeC----------------
Confidence 356666655 59999995 5677778889999999998763 25554321
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEeecCC
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPV 232 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~ 232 (838)
+++|++||+.+++.+.++. +...|.++.++++.|+++. ++.|++||+.+++.+.++..+..
T Consensus 178 -----------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 240 (445)
T 2ovr_B 178 -----------------DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240 (445)
T ss_dssp -----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred -----------------CCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence 2689999999999999986 4568999999988777766 56899999999998888876655
Q ss_pred cccCCCCccccccccceeEEcccEEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccc
Q 003221 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (838)
Q Consensus 233 p~~~~~~~~~~~~g~g~~Alspr~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ 310 (838)
+ ...+++..++|+.++. .+.+|+.... ..+
T Consensus 241 ~-------------v~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------~~~---------------- 272 (445)
T 2ovr_B 241 A-------------VRCVQYDGRRVVSGAYDFMVKVWDPETE-------------------TCL---------------- 272 (445)
T ss_dssp C-------------EEEEEECSSCEEEEETTSCEEEEEGGGT-------------------EEE----------------
T ss_pred c-------------EEEEEECCCEEEEEcCCCEEEEEECCCC-------------------cEe----------------
Confidence 3 3345565666665542 4566763110 000
Q ss_pred ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecC
Q 003221 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (838)
Q Consensus 311 ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~d 390 (838)
+++..+. +....+.++ ...+ ..+..+|.|++||+.+++.+..+.+|...+.++++ +|.+|++++.|
T Consensus 273 ~~~~~~~------~~v~~~~~~--~~~l----~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d 338 (445)
T 2ovr_B 273 HTLQGHT------NRVYSLQFD--GIHV----VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNAD 338 (445)
T ss_dssp EEECCCS------SCEEEEEEC--SSEE----EEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETT
T ss_pred EEecCCC------CceEEEEEC--CCEE----EEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCC
Confidence 0000000 000011111 1111 13567999999999999999999999999999988 46799999998
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 391 Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG-~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
|. |+|||+.. + ..+..+... .+...|.+++|+ +++|++++.||+|+||++.....
T Consensus 339 g~-i~vwd~~~-------~----------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 339 ST-VKIWDIKT-------G----------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp SC-EEEEETTT-------C----------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred Ce-EEEEECCC-------C----------cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 76 99999954 3 466666431 134579999995 68999999999999999986543
No 68
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.7e-20 Score=201.64 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=146.3
Q ss_pred CeEEEEEecC-cEEEEEccCCC-ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCC
Q 003221 75 KQVLLLGYQN-GFQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (838)
Q Consensus 75 ~~vL~lG~~~-G~qVWdv~~~g-~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~ 152 (838)
++.|++|..+ .++|||+.... .....+..|.++|.++++.|+. .+|+..+.
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------------~~l~s~s~-------------- 75 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------------NRIVTCSQ-------------- 75 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------------CCEEEEET--------------
T ss_pred CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------------CEEEEEeC--------------
Confidence 5677887555 59999996432 5666778899999999999852 25554332
Q ss_pred CCCcccCccCCCCCCCCCCCCEEEEEECCCCe---EEEEE-eCCCcEEEEEeCCC--eEEEE-eCCeEEEEECCCCce--
Q 003221 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVL-RFRSSVCMVRCSPR--IVAVG-LATQIYCFDALTLEN-- 223 (838)
Q Consensus 153 ~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~---~V~tL-~f~s~V~sV~~s~~--iLaV~-l~~~I~IwD~~t~e~-- 223 (838)
+++|++||+++++ .+..+ .+...|.+++++++ +|+++ .++.|++||+.+.+.
T Consensus 76 -------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 136 (377)
T 3dwl_C 76 -------------------DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW 136 (377)
T ss_dssp -------------------TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC
T ss_pred -------------------CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce
Confidence 2679999999987 33433 45679999999875 55554 466899999998763
Q ss_pred -eeEEee-cCCcccCCCCccccccccceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeeh
Q 003221 224 -KFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (838)
Q Consensus 224 -l~tL~t-~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ 299 (838)
...+.. |..+ ...+++++ ++|+
T Consensus 137 ~~~~~~~~h~~~-------------v~~~~~~~~~~~l~----------------------------------------- 162 (377)
T 3dwl_C 137 VSKHLKRPLRST-------------ILSLDWHPNNVLLA----------------------------------------- 162 (377)
T ss_dssp CCEEECSSCCSC-------------EEEEEECTTSSEEE-----------------------------------------
T ss_pred eeeEeecccCCC-------------eEEEEEcCCCCEEE-----------------------------------------
Confidence 444443 3221 22233322 1111
Q ss_pred hhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC------------------CCcE
Q 003221 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV------------------TRAI 361 (838)
Q Consensus 300 ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~------------------s~~~ 361 (838)
.+..+|.|+|||+. .++.
T Consensus 163 --------------------------------------------~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 198 (377)
T 3dwl_C 163 --------------------------------------------AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV 198 (377)
T ss_dssp --------------------------------------------EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE
T ss_pred --------------------------------------------EEeCCCEEEEEEEEecccCCCccccccccccchhhh
Confidence 12346778888874 3456
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003221 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (838)
Q Consensus 362 v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 441 (838)
+..+ +|..+|.+++|+|+|++||+++.||+ |+|||+.. +. .....+..+. + +...|.+++|+|
T Consensus 199 ~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~-------~~------~~~~~~~~~~-~-~~~~v~~~~~s~ 261 (377)
T 3dwl_C 199 CAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSA-------PE------QPPRALITVK-L-SQLPLRSLLWAN 261 (377)
T ss_dssp EECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECS-------TT------SCEEECCCEE-C-SSSCEEEEEEEE
T ss_pred hhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCC-------CC------CcceeeEeec-C-CCCceEEEEEcC
Confidence 6777 99999999999999999999999775 99999964 21 0001133443 3 345799999999
Q ss_pred CCCEEEEEeCCCeEEEEecCC
Q 003221 442 YSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 442 Dg~~Las~S~dGTVhIw~l~~ 462 (838)
|+++|++++.++++ +|+...
T Consensus 262 ~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 262 ESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp TTEEEEEESSSSEE-EECCCC
T ss_pred CCCEEEEEcCCcEE-EEEeCC
Confidence 99999999877766 787764
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.84 E-value=8.4e-19 Score=207.80 Aligned_cols=253 Identities=13% Similarity=0.076 Sum_probs=187.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~sr 130 (838)
..++.+.|.-+.|.. + ++.|++|..+| ++|||+. .+.....+..|.++|.+++|.|+.
T Consensus 9 ~~~h~~~v~~i~~sp----~---~~~la~~~~~g~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~------------- 67 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHP----T---EPWVLTTLYSGRVEIWNYE-TQVEVRSIQVTETPVRAGKFIARK------------- 67 (814)
T ss_dssp EEEECSCEEEEEECS----S---SSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGG-------------
T ss_pred eecCCCceEEEEECC----C---CCEEEEEeCCCEEEEEECC-CCceEEEEecCCCcEEEEEEeCCC-------------
Confidence 345778888888865 3 46777777665 9999995 466777888899999999999852
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAV 207 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV 207 (838)
.+|++.+. +++|++||+.+++.+.++. +...|.+++++++ .|++
T Consensus 68 ~~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 114 (814)
T 3mkq_A 68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114 (814)
T ss_dssp TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEE
Confidence 36665321 2789999999999999997 5578999999976 6666
Q ss_pred Ee-CCeEEEEECCCC-ceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCC
Q 003221 208 GL-ATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (838)
Q Consensus 208 ~l-~~~I~IwD~~t~-e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~s 285 (838)
+. ++.|++||+.+. .....+..+..+ ... ++|.+..
T Consensus 115 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------------v~~-------~~~~p~~---------------------- 152 (814)
T 3mkq_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMC-------VAFNPKD---------------------- 152 (814)
T ss_dssp EETTSEEEEEEGGGTSEEEEEEECCSSC-------------EEE-------EEEETTE----------------------
T ss_pred EcCCCEEEEEECCCCceEEEEEcCCCCc-------------EEE-------EEEEcCC----------------------
Confidence 65 568999999887 444444444332 112 2333200
Q ss_pred CCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003221 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (838)
Q Consensus 286 tsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~ 365 (838)
+..++ .+..+|.|++||+.+++....+
T Consensus 153 -----~~~l~------------------------------------------------~~~~dg~v~vwd~~~~~~~~~~ 179 (814)
T 3mkq_A 153 -----PSTFA------------------------------------------------SGCLDRTVKVWSLGQSTPNFTL 179 (814)
T ss_dssp -----EEEEE------------------------------------------------EEETTSEEEEEETTCSSCSEEE
T ss_pred -----CCEEE------------------------------------------------EEeCCCeEEEEECCCCcceeEE
Confidence 00000 1345789999999988877777
Q ss_pred ccCC-CCeEEEEECC--CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003221 366 KAHT-SPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (838)
Q Consensus 366 ~aH~-spIsaLaFSP--dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 442 (838)
..|. .+|.+++|+| +|.+|++++.+|+ |++||+.. + ..+..+. ++ ...|.+++|+||
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~-------~----------~~~~~~~-~~-~~~v~~~~~~~~ 239 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQT-------K----------SCVATLE-GH-MSNVSFAVFHPT 239 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTT-------T----------EEEEEEE-CC-SSCEEEEEECSS
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCC-------C----------cEEEEEc-CC-CCCEEEEEEcCC
Confidence 7655 8999999999 9999999999775 99999854 2 3555553 33 357999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 443 g~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
+++|++++.||+|+||++........+..|.
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 9999999999999999998766555555553
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.84 E-value=5.6e-18 Score=178.83 Aligned_cols=256 Identities=9% Similarity=0.077 Sum_probs=170.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec---C-cEEEEEccCCCceeEE-eeeccCcEEEEEEecCCCCCCCCCCcc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ---N-GFQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~---~-G~qVWdv~~~g~v~el-ls~hdg~V~~l~~lP~p~~~~~~d~F~ 127 (838)
.++++.|.-+.|.. + ...+|++|.. + .++|||++. ++...+ ...|.++|.++++.|+.
T Consensus 15 ~~h~~~v~~~~~~p----~--~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---------- 77 (357)
T 3i2n_A 15 KGFNYTVFDCKWVP----C--SAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATS---------- 77 (357)
T ss_dssp EECSSCEEEEEECT----T--SSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCC----------
T ss_pred cCCCCceEEEEEcC----C--CceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCC----------
Confidence 34778888888865 2 1467777864 4 499999964 444433 34688999999999751
Q ss_pred cCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe-EEEEEe-CCCcEEEEEe-----
Q 003221 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLR-FRSSVCMVRC----- 200 (838)
Q Consensus 128 ~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~-~V~tL~-f~s~V~sV~~----- 200 (838)
....+|++.+. +++|++||+.+++ .+..+. +...|.++.+
T Consensus 78 ~~~~~l~~~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 124 (357)
T 3i2n_A 78 LQQRYLATGDF---------------------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG 124 (357)
T ss_dssp TTTCCEEEEET---------------------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG
T ss_pred CCCceEEEecC---------------------------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccc
Confidence 00135554321 2679999999988 777776 4568999955
Q ss_pred -CCC--eEEEEe-CCeEEEEECCCCc-eeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCc
Q 003221 201 -SPR--IVAVGL-ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQ 275 (838)
Q Consensus 201 -s~~--iLaV~l-~~~I~IwD~~t~e-~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q 275 (838)
+++ +|+++. ++.|++||+.+++ ....+..+.... . ... ..+++...
T Consensus 125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~----~~v-----~~~~~~~~------------- 175 (357)
T 3i2n_A 125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN-------K----RDC-----WTVAFGNA------------- 175 (357)
T ss_dssp CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC-------C----CCE-----EEEEEECC-------------
T ss_pred cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC-------C----Cce-----EEEEEEec-------------
Confidence 343 666655 5689999999887 455554332210 0 000 11222110
Q ss_pred ccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEE
Q 003221 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD 355 (838)
Q Consensus 276 ~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwD 355 (838)
.+|.+ .+ +. .+..+|.|++||
T Consensus 176 ----------~~~~~-~~--------------------------------------------l~----~~~~d~~i~i~d 196 (357)
T 3i2n_A 176 ----------YNQEE-RV--------------------------------------------VC----AGYDNGDIKLFD 196 (357)
T ss_dssp ----------CC-CC-CE--------------------------------------------EE----EEETTSEEEEEE
T ss_pred ----------cCCCC-CE--------------------------------------------EE----EEccCCeEEEEE
Confidence 00000 00 00 235679999999
Q ss_pred CCCCcEEEEeccCCCCeEEEEECC---CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE--EEEecccc
Q 003221 356 FVTRAIISQFKAHTSPISALCFDP---SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL--YKLHRGIT 430 (838)
Q Consensus 356 l~s~~~v~~~~aH~spIsaLaFSP---dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l--~~L~RG~t 430 (838)
+.+++. .....|..+|.+++|+| +|.+|++++.+|. |+|||+... . . ...+ ..+ .+ +
T Consensus 197 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~-------~------~-~~~~~~~~~-~~-~ 258 (357)
T 3i2n_A 197 LRNMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQ-------H------P-TKGFASVSE-KA-H 258 (357)
T ss_dssp TTTTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEE-------E------T-TTEEEEEEE-EC-C
T ss_pred CccCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCC-------C------c-ccceeeecc-CC-C
Confidence 999876 44577999999999999 9999999999775 999998531 0 0 0111 122 23 3
Q ss_pred cccEEEEEEccCCC-EEEEEeCCCeEEEEecCCCC
Q 003221 431 SATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 431 ~a~I~sIaFSpDg~-~Las~S~dGTVhIw~l~~~g 464 (838)
...|.+++|+||++ +|++++.||+|+||++....
T Consensus 259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 45799999999999 89999999999999997644
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.84 E-value=5.8e-19 Score=200.84 Aligned_cols=319 Identities=10% Similarity=0.040 Sum_probs=192.0
Q ss_pred cEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEe-e---eccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 58 QVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELV-S---KRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 58 ~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ell-s---~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
.|..+.|.. + .++.|++|..+ .++|||+.. ++....+ . .|.++|..+.+. ++ .+
T Consensus 208 ~v~~~~~~~----~--~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~-------------~~ 266 (615)
T 1pgu_A 208 FVRDVEFSP----D--SGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DS-------------QK 266 (615)
T ss_dssp CEEEEEECS----T--TCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SS-------------SE
T ss_pred eEEEEEECC----C--CCCEEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CC-------------CE
Confidence 677777754 1 03566666655 599999964 5565666 5 788999999987 42 25
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-----CcEEEEEe-CCCeEE
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-----SSVCMVRC-SPRIVA 206 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~-----s~V~sV~~-s~~iLa 206 (838)
|++.+. +++|++||+++++.+..+..+ ..+.++.+ +.+.|+
T Consensus 267 l~~~~~---------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 313 (615)
T 1pgu_A 267 FATVGA---------------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 313 (615)
T ss_dssp EEEEET---------------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred EEEEcC---------------------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence 554321 268999999999999999876 57777777 445555
Q ss_pred EEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeC--CCceeecCCCCCCcccCCCCCC
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS--NTLLLSNSGRLSPQNLTPSGVS 283 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~--~~~~l~~~G~vs~q~l~~~~~s 283 (838)
++. ++.|++||+.+++.+..+..|..+ ...+++ +. |+.++ ..+.+|+...+...+ ..+...
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~-~~~v~~ 377 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGHNKG-------------ITALTV-NP-LISGSYDGRIMEWSSSSMHQDH-SNLIVS 377 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCCSSC-------------EEEEET-TT-TEEEETTSCEEETTTTEEECCC-CSCEEE
T ss_pred EEECCCCEEEEECCCCcEEEEEeCCCCC-------------EEEEEe-cC-cEEECCCCeEEEEEchhhcCcc-cCceEE
Confidence 544 668999999998888877665543 334455 44 33332 234556532110000 000000
Q ss_pred CCCCCCCCcceeeeehhhh---hhhhccc---------------------ccccccc-------ccccCCCCCCCCccCC
Q 003221 284 PSTSPGGSSLVARYAMEHS---KQFAAGL---------------------SKTLSKY-------CQELLPDGSSSPVSPN 332 (838)
Q Consensus 284 ~stsps~gslva~~A~ds~---k~la~Gl---------------------~ktls~y-------~~~~~p~gs~s~~s~n 332 (838)
... +.+..++ ....+.. +.+..+- .+.+.-| ...+........+.++
T Consensus 378 ~~~-~~~~~l~-~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (615)
T 1pgu_A 378 LDN-SKAQEYS-SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS 455 (615)
T ss_dssp EEC-CSTTCCE-EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred EEE-CCCcEEE-EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc
Confidence 000 0011111 1111100 1110000 0000000 0000000000001111
Q ss_pred CccccccccccccCC-CceEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCC
Q 003221 333 SVWKVGRHAGADMDN-AGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (838)
Q Consensus 333 ~~~k~~~~~~~~g~~-~G~V~VwDl~s~~~v-~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~ 410 (838)
.+.+. .+.. +|.|++||+.+++.. ..+.+|..+|.+++|+|+|++||+++.+|. |+|||+.. +
T Consensus 456 --~~~l~----~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~-------~- 520 (615)
T 1pgu_A 456 --QNYVA----VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQS-------R- 520 (615)
T ss_dssp --SSEEE----EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T-
T ss_pred --CCEEE----EeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCC-------C-
Confidence 11111 3456 899999999987765 788899999999999999999999999876 99999964 3
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEcc----------CCCEEEEEeCCCeEEEEecCCCC-CccccccCC
Q 003221 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSH----------YSQWIAIVSSKGTCHVFVLSPFG-GDSGFQTLS 473 (838)
Q Consensus 411 ~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp----------Dg~~Las~S~dGTVhIw~l~~~g-g~~~~~~H~ 473 (838)
..+..+ .+.+...|.+++|+| |+++||+++.||+|+||++...+ ....+..|.
T Consensus 521 ---------~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~ 584 (615)
T 1pgu_A 521 ---------EVKTSR-WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 584 (615)
T ss_dssp ---------EEEECC-SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST
T ss_pred ---------cceeEe-ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCc
Confidence 345444 343456799999999 99999999999999999998763 334455563
No 72
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.84 E-value=5.4e-19 Score=196.07 Aligned_cols=241 Identities=15% Similarity=0.178 Sum_probs=171.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
.++.+.|..+.|| ++.|++|..+| ++|||+. .+++...+..|.++|.++.+.+.
T Consensus 170 ~~h~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~--------------- 224 (435)
T 1p22_A 170 TGHTGSVLCLQYD---------ERVIITGSSDSTVRVWDVN-TGEMLNTLIHHCEAVLHLRFNNG--------------- 224 (435)
T ss_dssp CCCSSCEEEEECC---------SSEEEEEETTSCEEEEESS-SCCEEEEECCCCSCEEEEECCTT---------------
T ss_pred cCCCCcEEEEEEC---------CCEEEEEcCCCeEEEEECC-CCcEEEEEcCCCCcEEEEEEcCC---------------
Confidence 3566777777763 24667776665 9999995 46677778889999999987631
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEE---EEE-eCCCcEEEEEeCCCeEEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVL-RFRSSVCMVRCSPRIVAV 207 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V---~tL-~f~s~V~sV~~s~~iLaV 207 (838)
+|++.+. +++|++||+++++.+ ..+ .+...|.++.++.++|++
T Consensus 225 ~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 271 (435)
T 1p22_A 225 MMVTCSK---------------------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 271 (435)
T ss_dssp EEEEEET---------------------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred EEEEeeC---------------------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEE
Confidence 5554321 267999999988765 334 345799999998888877
Q ss_pred Ee-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 208 ~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
+. ++.|++||+.+++.+.++..+..+ ... +++.+.
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~------------------------ 307 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRG-------------IAC-------LQYRDR------------------------ 307 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSC-------------EEE-------EEEETT------------------------
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCc-------------EEE-------EEeCCC------------------------
Confidence 66 568999999999988887765442 111 222110
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~ 366 (838)
+++ .+..+|.|+|||+.+++.+..+.
T Consensus 308 ------~l~------------------------------------------------~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 308 ------LVV------------------------------------------------SGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp ------EEE------------------------------------------------EEETTSCEEEEETTTCCEEEEEC
T ss_pred ------EEE------------------------------------------------EEeCCCeEEEEECCCCCEEEEEe
Confidence 000 23468899999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (838)
+|..+|.+++| +|.+|++++.||+ |+|||+...... . .......+..+ .+ +...|.+++| |+++|
T Consensus 334 ~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~---~-----~~~~~~~~~~~-~~-h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 334 GHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDP---R-----APAGTLCLRTL-VE-HSGRVFRLQF--DEFQI 398 (435)
T ss_dssp CCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTST---T-----SCTTTTEEEEE-CC-CSSCCCCEEE--CSSCE
T ss_pred CCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCc---c-----ccccchheeec-cC-CCCCeEEEEe--CCCEE
Confidence 99999999999 7899999999886 999998531000 0 00001245555 34 3457999999 88999
Q ss_pred EEEeCCCeEEEEecCCCC
Q 003221 447 AIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 447 as~S~dGTVhIw~l~~~g 464 (838)
++++.||+|+||++....
T Consensus 399 ~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 399 VSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EECCSSSEEEEEC-----
T ss_pred EEEeCCCEEEEEECCCCC
Confidence 999999999999997644
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.83 E-value=6.2e-19 Score=185.82 Aligned_cols=257 Identities=11% Similarity=0.030 Sum_probs=170.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCc--eeEEeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~g~--v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~ 128 (838)
...+++.|.-+.|.. + ++.|++|.. +.++|||++.... ....+..|.++|.++++.|++
T Consensus 7 ~~~h~~~v~~~~~s~----~---~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------- 68 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP----S---KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT----------- 68 (342)
T ss_dssp SSCCSSCEEEEEEEG----G---GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-----------
T ss_pred ccCCCCcEEEEEEcC----C---CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-----------
Confidence 346889999999986 2 345566555 4599999975331 123345788999999999752
Q ss_pred CCc-EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEEC-CCCeEEEEEe--CCCcEEEEEeCC-C
Q 003221 129 LHP-FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLR--FRSSVCMVRCSP-R 203 (838)
Q Consensus 129 srp-LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl-~tg~~V~tL~--f~s~V~sV~~s~-~ 203 (838)
. +|++.+. .++|++||+ .+++...... +...|.++++++ +
T Consensus 69 --~~~l~~~~~---------------------------------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 113 (342)
T 1yfq_A 69 --DLQIYVGTV---------------------------------QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD 113 (342)
T ss_dssp --SEEEEEEET---------------------------------TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTT
T ss_pred --CcEEEEEcC---------------------------------CCeEEEEEeccCCceEeccccCCCCceEEEEeCCCC
Confidence 3 4554221 267999999 8887733334 667999999985 5
Q ss_pred eEEEEe-CCeEEEEECCC---------CceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCC
Q 003221 204 IVAVGL-ATQIYCFDALT---------LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLS 273 (838)
Q Consensus 204 iLaV~l-~~~I~IwD~~t---------~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs 273 (838)
+|+++. ++.|++||+.+ ++.+.++. ++.+ . ..+++.++.
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-------------v-------~~~~~~~~~---------- 162 (342)
T 1yfq_A 114 KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK-------------I-------FTMDTNSSR---------- 162 (342)
T ss_dssp EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC-------------E-------EEEEECSSE----------
T ss_pred EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc-------------e-------EEEEecCCc----------
Confidence 555544 66899999886 33322211 1110 1 112221110
Q ss_pred CcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEE
Q 003221 274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV 353 (838)
Q Consensus 274 ~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~V 353 (838)
+ ..+..+|.|++
T Consensus 163 -------------------l-------------------------------------------------~~~~~d~~i~i 174 (342)
T 1yfq_A 163 -------------------L-------------------------------------------------IVGMNNSQVQW 174 (342)
T ss_dssp -------------------E-------------------------------------------------EEEESTTEEEE
T ss_pred -------------------E-------------------------------------------------EEEeCCCeEEE
Confidence 0 02345789999
Q ss_pred EECCC-Cc--EEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003221 354 KDFVT-RA--IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (838)
Q Consensus 354 wDl~s-~~--~v~~~~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~ 429 (838)
||+.+ +. .......|..+|.+++|+| +|.+|++++.+|. |+||++... |. ......++.+....
T Consensus 175 ~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~------~~-----~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQ------GD-----DYNSSKRFAFRCHR 242 (342)
T ss_dssp EESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTT------CC-----STTCTTCEEEECCC
T ss_pred EECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCC------Cc-----ccccccceeeeccc
Confidence 99988 54 3445567999999999999 9999999999775 999998541 00 00001233342211
Q ss_pred -------ccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccC
Q 003221 430 -------TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (838)
Q Consensus 430 -------t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H 472 (838)
+...|.+++|+||+++|++++.||+|+||++........+..|
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 1237999999999999999999999999999865544444444
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.83 E-value=4.6e-18 Score=188.60 Aligned_cols=239 Identities=13% Similarity=0.157 Sum_probs=174.4
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
.++++.|.-+.|.. + + .|++|..+ .++|||++ .+.....+..|.++|.++++.|.+ ...
T Consensus 159 ~~h~~~V~~l~~~~----~---~-~l~s~s~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~-----------~~~ 218 (464)
T 3v7d_B 159 SGHDGGVWALKYAH----G---G-ILVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYK-----------NIK 218 (464)
T ss_dssp CCCSSCEEEEEECS----T---T-EEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEEESS-----------SCE
T ss_pred eCCCcCEEEEEEcC----C---C-EEEEEeCCCCEEEEECC-CCcEEEEECCCCCccEEEEEecCC-----------CCC
Confidence 45677777777743 2 2 55555555 59999995 567777888899999999999643 223
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeE-----------------------EEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------------------EHV 188 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~-----------------------V~t 188 (838)
+|+..+. +++|++||+++++. +..
T Consensus 219 ~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 219 YIVTGSR---------------------------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEEEET---------------------------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEEEcC---------------------------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 5554321 26799999998763 333
Q ss_pred Ee-CCCcEEEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCcee
Q 003221 189 LR-FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL 266 (838)
Q Consensus 189 L~-f~s~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l 266 (838)
+. +...|.++..+.++|+++. ++.|++||+.+++.+.++..+..+ .. .+++.++.
T Consensus 266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~-------~~~~~~~~--- 322 (464)
T 3v7d_B 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-------------IY-------STIYDHER--- 322 (464)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EE-------EEEEETTT---
T ss_pred ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------EE-------EEEEcCCC---
Confidence 43 3468899988888777766 568999999999988877655432 11 22333211
Q ss_pred ecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccC
Q 003221 267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346 (838)
Q Consensus 267 ~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~ 346 (838)
..++ .+.
T Consensus 323 -------------------------~~l~------------------------------------------------sg~ 329 (464)
T 3v7d_B 323 -------------------------KRCI------------------------------------------------SAS 329 (464)
T ss_dssp -------------------------TEEE------------------------------------------------EEE
T ss_pred -------------------------CEEE------------------------------------------------EEe
Confidence 0000 235
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+|.|+|||+.+++.+..+.+|..+|.+++|+ +.+|++++.||+ |+|||+.. + ...+.+.
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~-------~----------~~~~~~~ 389 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDAND-------Y----------SRKFSYH 389 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTT-------C----------CEEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCC-------C----------ceeeeec
Confidence 68999999999999999999999999999997 589999999775 99999964 2 3444543
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
+...+..++|++|+++|++++ ||+|+||++....
T Consensus 390 ---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 390 ---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp ---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred ---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 233577889999999999999 8999999998643
No 75
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.3e-17 Score=176.02 Aligned_cols=244 Identities=10% Similarity=0.175 Sum_probs=170.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
..+.+.|.-+.|.. + ++.|++|..+| ++|||+.. +.+...+. +.++|..+++.|+. .
T Consensus 71 ~~h~~~v~~~~~~~----~---~~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~-------------~ 128 (369)
T 3zwl_B 71 DGHTGTIWSIDVDC----F---TKYCVTGSADYSIKLWDVSN-GQCVATWK-SPVPVKRVEFSPCG-------------N 128 (369)
T ss_dssp CCCSSCEEEEEECT----T---SSEEEEEETTTEEEEEETTT-CCEEEEEE-CSSCEEEEEECTTS-------------S
T ss_pred hhcCCcEEEEEEcC----C---CCEEEEEeCCCeEEEEECCC-CcEEEEee-cCCCeEEEEEccCC-------------C
Confidence 44667777777754 2 34566666554 99999964 55666665 78899999999752 3
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEe-CCC--cEEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLR-FRS--SVCM 197 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~-----------V~tL~-f~s--~V~s 197 (838)
+|++...+ . ...++.|++||+.+++. +..+. +.. .|.+
T Consensus 129 ~l~~~~~~-~---------------------------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 129 YFLAILDN-V---------------------------MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp EEEEEECC-B---------------------------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred EEEEecCC-c---------------------------cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 55543321 0 01237899999976642 22222 222 8999
Q ss_pred EEeCCC--eEEEEe-CCeEEEEECCC-CceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCC
Q 003221 198 VRCSPR--IVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLS 273 (838)
Q Consensus 198 V~~s~~--iLaV~l-~~~I~IwD~~t-~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs 273 (838)
++++++ +|+++. ++.|++||+.+ .+....+..+..+ ... +++.++.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~---------- 230 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS-------------ISD-------MQFSPDL---------- 230 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC-------------EEE-------EEECTTS----------
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc-------------eeE-------EEECCCC----------
Confidence 999875 666655 56899999998 6666665544332 112 2332211
Q ss_pred CcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEE
Q 003221 274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV 353 (838)
Q Consensus 274 ~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~V 353 (838)
.+++ .+..+|.|++
T Consensus 231 ------------------~~l~------------------------------------------------~~~~d~~i~v 244 (369)
T 3zwl_B 231 ------------------TYFI------------------------------------------------TSSRDTNSFL 244 (369)
T ss_dssp ------------------SEEE------------------------------------------------EEETTSEEEE
T ss_pred ------------------CEEE------------------------------------------------EecCCceEEE
Confidence 0000 1345789999
Q ss_pred EECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCC-------------EEEEEecCCCcccCCCCCCccccCCcce
Q 003221 354 KDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-------------NINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 354 wDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt-------------~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
||+.+++.+..+. |..++.+++|+|+|++|++++.++. .|++||+.. + .
T Consensus 245 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------~----------~ 306 (369)
T 3zwl_B 245 VDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-------E----------E 306 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-------C----------C
T ss_pred EECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-------C----------c
Confidence 9999999888887 7889999999999999999998764 689999854 2 3
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
.+..+. ++ ...|.+++|+||+++|++++.||+|+||+++.
T Consensus 307 ~~~~~~-~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 307 EIGRVQ-GH-FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEEEE-CC-SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred chhhee-cc-cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 555653 43 35799999999999999999999999999975
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.83 E-value=3.8e-19 Score=194.64 Aligned_cols=229 Identities=14% Similarity=0.149 Sum_probs=161.6
Q ss_pred EEEEEecCc-EEEEEccCCCce---eEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCC
Q 003221 77 VLLLGYQNG-FQVLDVEDASNF---NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (838)
Q Consensus 77 vL~lG~~~G-~qVWdv~~~g~v---~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~ 152 (838)
+++.|..+| ++|||++..+.. ...+..|.++|.++++.|. . ..+|++.+.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~----------~--~~~l~s~s~-------------- 102 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH----------N--DNVIASGSE-------------- 102 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT----------C--TTEEEEEET--------------
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC----------C--CCEEEEEeC--------------
Confidence 344455554 999999665432 3456789999999999972 1 236665321
Q ss_pred CCCcccCccCCCCCCCCCCCCEEEEEECCCC-------eEEEEEe-CCCcEEEEEeCCC---eEEEEe-CCeEEEEECCC
Q 003221 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLR-FRSSVCMVRCSPR---IVAVGL-ATQIYCFDALT 220 (838)
Q Consensus 153 ~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg-------~~V~tL~-f~s~V~sV~~s~~---iLaV~l-~~~I~IwD~~t 220 (838)
+++|+|||+.++ +.+..+. +...|.+++++++ +|+++. ++.|++||+.+
T Consensus 103 -------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 163 (402)
T 2aq5_A 103 -------------------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT 163 (402)
T ss_dssp -------------------TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT
T ss_pred -------------------CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC
Confidence 378999999988 5667776 5579999999875 566655 66899999999
Q ss_pred CceeeEE--eecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeee
Q 003221 221 LENKFSV--LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (838)
Q Consensus 221 ~e~l~tL--~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A 298 (838)
++.+.++ ..+..+ ... |++.++. .+++
T Consensus 164 ~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~----------------------------~~l~--- 192 (402)
T 2aq5_A 164 GAAVLTLGPDVHPDT-------------IYS-------VDWSRDG----------------------------ALIC--- 192 (402)
T ss_dssp TEEEEEECTTTCCSC-------------EEE-------EEECTTS----------------------------SCEE---
T ss_pred CCccEEEecCCCCCc-------------eEE-------EEECCCC----------------------------CEEE---
Confidence 9888777 333331 112 2332210 0000
Q ss_pred hhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe-ccCCCC-eEEEE
Q 003221 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSP-ISALC 376 (838)
Q Consensus 299 ~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~-~aH~sp-IsaLa 376 (838)
.+..+|.|+|||+.+++.+..+ .+|... +.+++
T Consensus 193 ---------------------------------------------~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 193 ---------------------------------------------TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp ---------------------------------------------EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred ---------------------------------------------EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence 2346899999999999999998 799887 99999
Q ss_pred ECCCCCEEEEE---ecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE-EeCC
Q 003221 377 FDPSGTLLVTA---SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-VSSK 452 (838)
Q Consensus 377 FSPdGtlLATA---S~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las-~S~d 452 (838)
|+|+|++|+++ +.+| .|+|||+.. +. ....+..+ + +...|.+++|+||+++|++ ++.|
T Consensus 228 ~~~~~~~l~~g~~~~~d~-~i~iwd~~~-------~~-------~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSER-QVALWDTKH-------LE-------EPLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp ECSTTEEEEEEECTTCCE-EEEEEETTB-------CS-------SCSEEEEC--C-CCSSCEEEEEETTTTEEEEEETTC
T ss_pred EcCCCcEEEEeccCCCCc-eEEEEcCcc-------cc-------CCceEEec--c-CCCceeEEEEcCCCCEEEEEEcCC
Confidence 99999999999 5655 599999964 11 00122222 2 2346899999999999975 5579
Q ss_pred CeEEEEecCCCC
Q 003221 453 GTCHVFVLSPFG 464 (838)
Q Consensus 453 GTVhIw~l~~~g 464 (838)
|+|+||++....
T Consensus 290 g~i~i~d~~~~~ 301 (402)
T 2aq5_A 290 SSIRYFEITSEA 301 (402)
T ss_dssp SCEEEEEECSST
T ss_pred CeEEEEEecCCC
Confidence 999999998654
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.83 E-value=1.9e-18 Score=196.66 Aligned_cols=248 Identities=12% Similarity=0.088 Sum_probs=183.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCC----ceeEEeeeccCc-EEEEEEec--CCCCCCCCCC
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDAS----NFNELVSKRDGP-VSFLQMQP--FPVKDDGCEG 125 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g----~v~ells~hdg~-V~~l~~lP--~p~~~~~~d~ 125 (838)
..+++.|..+.|.. + ++.|++|.++.++|||++. + .....+..|.++ |.++++.| ++
T Consensus 15 ~~~~~~v~~~~~sp----d---g~~l~~~~~~~v~v~~~~~-~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-------- 78 (615)
T 1pgu_A 15 STQRNFTTHLSYDP----T---TNAIAYPCGKSAFVRCLDD-GDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-------- 78 (615)
T ss_dssp CCCTTCCCCCEEET----T---TTEEEEEETTEEEEEECCS-SCCSSCSEEEECTTTTSCEEEEEECSSTTC--------
T ss_pred CCccCceeEEEECC----C---CCEEEEecCCeEEEEECCC-CCCccccceEEecCCCceEEEEEECcCCCC--------
Confidence 45778888888876 3 5688888888899999964 5 566778889999 99999998 53
Q ss_pred cccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCC--------eEEEEEe-CCCcEE
Q 003221 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--------CYEHVLR-FRSSVC 196 (838)
Q Consensus 126 F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg--------~~V~tL~-f~s~V~ 196 (838)
.+||+.+. +++|++||+.++ +.+..+. +...|.
T Consensus 79 -----~~l~s~~~---------------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 120 (615)
T 1pgu_A 79 -----QYLCSGDE---------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 120 (615)
T ss_dssp -----CEEEEEET---------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE
T ss_pred -----CEEEEecC---------------------------------CCEEEEEeCCCCcccccccccccchhhcccccEE
Confidence 36655321 278999999855 6666776 467999
Q ss_pred EEEeCCC--eEEEEeCC-----eEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecC
Q 003221 197 MVRCSPR--IVAVGLAT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNS 269 (838)
Q Consensus 197 sV~~s~~--iLaV~l~~-----~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~ 269 (838)
+++++++ +|+++..+ .|++|| +++.+..+..+..+ .. .++|.++.
T Consensus 121 ~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~-------------v~-------~~~~~~~~------ 172 (615)
T 1pgu_A 121 DISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR-------------IN-------ACHLKQSR------ 172 (615)
T ss_dssp EEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC-------------EE-------EEEECSSS------
T ss_pred EEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc-------------EE-------EEEECCCC------
Confidence 9999986 67776654 688888 55555555444332 11 23333211
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCc
Q 003221 270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 349 (838)
Q Consensus 270 G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G 349 (838)
..+++ .+..+|
T Consensus 173 ---------------------~~~l~------------------------------------------------~~~~d~ 183 (615)
T 1pgu_A 173 ---------------------PMRSM------------------------------------------------TVGDDG 183 (615)
T ss_dssp ---------------------SCEEE------------------------------------------------EEETTT
T ss_pred ---------------------CcEEE------------------------------------------------EEeCCC
Confidence 00000 234689
Q ss_pred eEEEEECCCCcEEEEeccCCC---CeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 350 IVVVKDFVTRAIISQFKAHTS---PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~s---pIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
.|+|||+.+++.+..+.+|.. +|.+++|+|+ |++|++++.+|. |+|||+.. + ..+..+
T Consensus 184 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~~~~ 245 (615)
T 1pgu_A 184 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS-------G----------EFLKYI 245 (615)
T ss_dssp EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT-------C----------CEEEEC
T ss_pred cEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCC-------C----------CEeEEe
Confidence 999999999999999999999 9999999999 999999999876 99999854 3 456666
Q ss_pred ec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccccc
Q 003221 426 HR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (838)
Q Consensus 426 ~R---G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~ 471 (838)
.. + +...|.+++|+ |+++|++++.||+|+||++........+..
T Consensus 246 ~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 246 EDDQEP-VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp CBTTBC-CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred cccccc-cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 33 3 44579999999 999999999999999999986544444433
No 78
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.83 E-value=1.5e-19 Score=196.85 Aligned_cols=240 Identities=9% Similarity=0.037 Sum_probs=146.0
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~ 154 (838)
+.++..+.+...+.|++.. .....|++.|.+|+|.|++ .+||..+.|.
T Consensus 17 ~~~~~~~g~~~~~~w~~p~-----~~p~~H~~~V~~v~fSpDG-------------~~las~s~d~-------------- 64 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPV-----TAPACMEVQIGAVRYRRDG-------------ALLLAASSLS-------------- 64 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSS-------------CEEEEEECSS--------------
T ss_pred ceEEecCCCccccccCCCC-----CCcccccCCEEEEEECCCC-------------CEEEEEcCCC--------------
Confidence 3445555556689999854 2234689999999999874 2666533221
Q ss_pred CcccCccCCCCCCCCCCCCEEEEEECCCCeEE-----EEEeCCCcEEEEEeCCC--eEEEEeCCeEEEEECCCCceeeEE
Q 003221 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE-----HVLRFRSSVCMVRCSPR--IVAVGLATQIYCFDALTLENKFSV 227 (838)
Q Consensus 155 ~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V-----~tL~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~l~tL 227 (838)
...|| ++|++|+..++... ....+...|.+++|+++ +|+++.++.|+|||+.+++.+...
T Consensus 65 ---~~~wd----------~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~ 131 (357)
T 4g56_B 65 ---SRTWG----------GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN 131 (357)
T ss_dssp ---SSSCC----------EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC
T ss_pred ---Ccccc----------CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE
Confidence 01244 78999999887643 33456788999999875 677777889999999987653321
Q ss_pred e----ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhh
Q 003221 228 L----TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (838)
Q Consensus 228 ~----t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k 303 (838)
. .|..+ . ..|+|.++. .+
T Consensus 132 ~~~~~~h~~~-------------V-------~~v~~spdg----------------------------~~---------- 153 (357)
T 4g56_B 132 KFAKYEHDDI-------------V-------KTLSVFSDG----------------------------TQ---------- 153 (357)
T ss_dssp CEEECCCSSC-------------E-------EEEEECSSS----------------------------SE----------
T ss_pred eeccCCCCCC-------------E-------EEEEECCCC----------------------------CE----------
Confidence 1 11111 1 223333211 00
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-
Q 003221 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT- 382 (838)
Q Consensus 304 ~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt- 382 (838)
+. ++..+|+|+|||+.+++.+..|.+|..+|.+|+|+|++.
T Consensus 154 ----------------------------------l~----sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 154 ----------------------------------AV----SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp ----------------------------------EE----EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred ----------------------------------EE----EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 00 245689999999999999999999999999999999984
Q ss_pred EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecC
Q 003221 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 383 lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD-g~~Las~S~dGTVhIw~l~ 461 (838)
+|++++.||+ |+|||+.. + +.+..+....+...|.+|+|+|| +++||+++.|++|+||++.
T Consensus 196 ~~~s~~~dg~-v~~wd~~~-------~----------~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 196 IFLSCGEDGR-ILLWDTRK-------P----------KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp CEEEEETTSC-EEECCTTS-------S----------SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred eeeeeccCCc-eEEEECCC-------C----------ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 8999999876 99999864 2 12222222233457999999998 5689999999999999998
Q ss_pred CCCCccccccCC
Q 003221 462 PFGGDSGFQTLS 473 (838)
Q Consensus 462 ~~gg~~~~~~H~ 473 (838)
.......+..|.
T Consensus 258 ~~~~~~~~~~~~ 269 (357)
T 4g56_B 258 NPDSAQTSAVHS 269 (357)
T ss_dssp CGGGCEEECCCS
T ss_pred CCcEeEEEeccc
Confidence 766555666664
No 79
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.9e-18 Score=182.98 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=82.1
Q ss_pred cCCCceEEEEECCC----CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 345 MDNAGIVVVKDFVT----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 345 g~~~G~V~VwDl~s----~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
++.||+|+|||+.. .+.+..+.+|..+|.+|+|+|+|.+||||+.||+ |+|||+.. + ...
T Consensus 125 ~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~iW~~~~-------~--------~~~ 188 (330)
T 2hes_X 125 CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT-VRIWKDYD-------D--------DWE 188 (330)
T ss_dssp EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC-EEEEEEET-------T--------EEE
T ss_pred EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCC-------C--------Cee
Confidence 45689999999943 2567889999999999999999999999999876 99999843 1 113
Q ss_pred EEEEEecccccccEEEEEEccC--CCEEEEEeCCCeEEEEecCC
Q 003221 421 HLYKLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpD--g~~Las~S~dGTVhIw~l~~ 462 (838)
.+..+ .|+ ...|++++|+|+ +.+|++++.|++|+||++..
T Consensus 189 ~~~~~-~~h-~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 189 CVAVL-NGH-EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEEE-CCC-SSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred EEEEc-cCC-CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 45555 454 457999999999 78999999999999999864
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.82 E-value=4.5e-19 Score=197.26 Aligned_cols=281 Identities=12% Similarity=0.091 Sum_probs=174.7
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEE--eeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~el--ls~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
+.++|+-+.|.- ..+++|++|..+| |+|||++. ++...+ +.+|.++|.+|+|.|.- + .
T Consensus 118 ~~~~V~~l~~~P------~~~~~lasGs~dg~i~lWd~~~-~~~~~~~~~~gH~~~V~~l~f~p~~----------~--~ 178 (435)
T 4e54_B 118 FDRRATSLAWHP------THPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSITGLKFNPLN----------T--N 178 (435)
T ss_dssp CSSCEEEEEECS------SCTTCEEEEETTSCEEEECSSC-CSCCEEECCCSSSCCCCEEEECSSC----------T--T
T ss_pred CCCCEEEEEEeC------CCCCEEEEEeCCCEEEEEECCC-CCceeEEEccCCCCCEEEEEEeCCC----------C--C
Confidence 456677777743 1246788888776 99999964 333333 34689999999999731 1 2
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CcEEEEEeCCC--eEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPR--IVA 206 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~---s~V~sV~~s~~--iLa 206 (838)
+|+..+. +++|+|||++++........+ ..+.+++++++ +|+
T Consensus 179 ~l~s~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (435)
T 4e54_B 179 QFYASSM---------------------------------EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV 225 (435)
T ss_dssp EEEEECS---------------------------------SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEE
T ss_pred EEEEEeC---------------------------------CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEE
Confidence 5544221 378999999887654433332 35678888764 777
Q ss_pred EEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc---cEEEEeC--CCceeecCCCCC-CcccCC
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYAS--NTLLLSNSGRLS-PQNLTP 279 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp---r~LAys~--~~~~l~~~G~vs-~q~l~~ 279 (838)
++. ++.|++||+.+ +.+.++..|..+ ...++++| .+|+.++ ..+.+|+.-... ...+..
T Consensus 226 ~g~~dg~i~~wd~~~-~~~~~~~~h~~~-------------v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~ 291 (435)
T 4e54_B 226 TGDNVGNVILLNMDG-KELWNLRMHKKK-------------VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY 291 (435)
T ss_dssp EECSSSBEEEEESSS-CBCCCSBCCSSC-------------EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred EEeCCCcEeeeccCc-ceeEEEecccce-------------EEeeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence 765 56899999864 445555555443 44577765 4566543 346678741110 000000
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~ 359 (838)
...+ ......+.+++.++.+. ++..||.|+|||+.++
T Consensus 292 ---------------------------------~~~h------~~~v~~~~~spdg~~l~----s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 292 ---------------------------------SLPH------RHPVNAACFSPDGARLL----TTDQKSEIRVYSASQW 328 (435)
T ss_dssp ---------------------------------CCBC------SSCEEECCBCTTSSEEE----EEESSSCEEEEESSSS
T ss_pred ---------------------------------eeec------cccccceeECCCCCeeE----EEcCCCEEEEEECCCC
Confidence 0000 00011122223333332 4678999999999998
Q ss_pred cEEEEeccCCCC------eEEEEECCCCCEEEEEec-----------CCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 360 AIISQFKAHTSP------ISALCFDPSGTLLVTASV-----------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 360 ~~v~~~~aH~sp------IsaLaFSPdGtlLATAS~-----------dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
+....+..|... +....|+|++.++++++. +++.|+|||+.. | ..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~-------g----------~~~ 391 (435)
T 4e54_B 329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS-------G----------KMM 391 (435)
T ss_dssp SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS-------C----------CEE
T ss_pred ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC-------C----------cEE
Confidence 888877776532 234567777776666643 456799999864 3 467
Q ss_pred EEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 423 YKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 423 ~~L~RG~t~a~I~sI-aFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
..+..++ ...|.++ +|||||++||+++ |++|+||+++..
T Consensus 392 ~~l~~~~-~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 392 CQLYDPE-SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp EEECCSS-CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred EEEeCCC-CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 7775554 3457776 6999999999876 789999999764
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.82 E-value=2.4e-19 Score=223.58 Aligned_cols=243 Identities=13% Similarity=0.178 Sum_probs=176.4
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
++.+++|..+| +++||+. .+.....+..|.++|..+++.|+. .+|+..+.
T Consensus 973 g~~l~~g~~~g~i~i~d~~-~~~~~~~~~~h~~~v~~l~~s~dg-------------~~l~s~~~--------------- 1023 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELP-NNRVFSSGVGHKKAVRHIQFTADG-------------KTLISSSE--------------- 1023 (1249)
T ss_dssp SSEEEEEETTSCCEEEETT-TTSCEEECCCCSSCCCCEEECSSS-------------SCEEEECS---------------
T ss_pred CCEEEEEcCCCCEEEEEcC-CCceeeecccCCCceEEEEECCCC-------------CEEEEEcC---------------
Confidence 56788888776 9999995 466777788899999999999753 24544221
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeCCeEEEEECCCCceeeEEeecC
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLATQIYCFDALTLENKFSVLTYP 231 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~l~tL~t~p 231 (838)
+++|++||+.+++.+....+...|.++.++++ +++++.++.|++||+.+++...++..+.
T Consensus 1024 ------------------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 1085 (1249)
T 3sfz_A 1024 ------------------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQ 1085 (1249)
T ss_dssp ------------------SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCS
T ss_pred ------------------CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccC
Confidence 26899999999998877677889999999886 5666778899999999999888776654
Q ss_pred CcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccc
Q 003221 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (838)
Q Consensus 232 ~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~k 311 (838)
.+ ...++ +.++. ..+
T Consensus 1086 ~~-------------v~~~~-------~s~d~----------------------------~~l----------------- 1100 (1249)
T 3sfz_A 1086 GT-------------VLSCA-------ISSDA----------------------------TKF----------------- 1100 (1249)
T ss_dssp SC-------------CCCEE-------ECSSS----------------------------SSC-----------------
T ss_pred Cc-------------EEEEE-------ECCCC----------------------------CEE-----------------
Confidence 42 11232 22210 000
Q ss_pred cccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC
Q 003221 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391 (838)
Q Consensus 312 tls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG 391 (838)
. .+..+|.|+|||+.+++.+..+.+|..+|.+++|+|+|++|||++.||
T Consensus 1101 ---------------------------~----s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1101 ---------------------------S----STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp ---------------------------E----EECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred ---------------------------E----EEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 0 235688999999999999999999999999999999999999999988
Q ss_pred CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccccc
Q 003221 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (838)
Q Consensus 392 t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~ 471 (838)
+ |+|||+.. |........ ........+ +...|.+++|||||++|++++ |+|+||++........+..
T Consensus 1150 ~-i~vwd~~~-------~~~~~~~~~--~~~~~~~~~-~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~ 1216 (1249)
T 3sfz_A 1150 E-IRIWNVSD-------GQLLHSCAP--ISVEEGTAT-HGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT 1216 (1249)
T ss_dssp C-CCEEESSS-------SCCCCCCCC--CC--------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC
T ss_pred E-EEEEECCC-------CceEEEecc--ccccccccc-cCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec
Confidence 7 99999964 210000000 000011122 344699999999999999886 8999999987665555555
Q ss_pred CC
Q 003221 472 LS 473 (838)
Q Consensus 472 H~ 473 (838)
|.
T Consensus 1217 ~~ 1218 (1249)
T 3sfz_A 1217 NG 1218 (1249)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 82
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.7e-18 Score=212.40 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=80.1
Q ss_pred ccCCCceEEEEECCCC---------------------------------------------cEEEEeccCCCCeEEEEEC
Q 003221 344 DMDNAGIVVVKDFVTR---------------------------------------------AIISQFKAHTSPISALCFD 378 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~---------------------------------------------~~v~~~~aH~spIsaLaFS 378 (838)
.+..||+|+|||+.++ +++..+.+|..+|++|+||
T Consensus 505 sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafS 584 (902)
T 2oaj_A 505 VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNS 584 (902)
T ss_dssp EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEEC
T ss_pred EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEec
Confidence 4678999999999765 2467889999999999999
Q ss_pred CCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-c----ccccccEEEEEEc-----cCC---CE
Q 003221 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-R----GITSATIQDICFS-----HYS---QW 445 (838)
Q Consensus 379 PdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-R----G~t~a~I~sIaFS-----pDg---~~ 445 (838)
||| +||+|+.||+ |+|||+.. + ..+++.. + | +...|++|+|| ||| ++
T Consensus 585 pdG-~lAsgs~D~t-v~lwd~~~-------~----------~~~~~~~~~~~~~g-h~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 585 NIG-FVGIAYAAGS-LMLIDRRG-------P----------AIIYMENIREISGA-QSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp BTS-EEEEEETTSE-EEEEETTT-------T----------EEEEEEEGGGTCSS-CCCCEEEEEEEEEECTTSSSEEEE
T ss_pred CCc-EEEEEeCCCc-EEEEECCC-------C----------eEEEEeehhHhccc-cccceEEEEEEEEecCCCCCcceE
Confidence 999 9999999765 99999853 1 2333211 2 4 34579999999 885 89
Q ss_pred EEEEeCCCeEEEEecC
Q 003221 446 IAIVSSKGTCHVFVLS 461 (838)
Q Consensus 446 Las~S~dGTVhIw~l~ 461 (838)
|++++.|+||++|++.
T Consensus 645 l~sgs~D~tv~~wd~~ 660 (902)
T 2oaj_A 645 MVCGTDMGEVITYKIL 660 (902)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEecCCcEEEEEEe
Confidence 9999999999999993
No 83
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.3e-18 Score=208.61 Aligned_cols=263 Identities=11% Similarity=0.097 Sum_probs=174.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~-~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..+|++.|.-+.|+. + ++.|++|..+| ++|||+.. .+.....+..|.++|.++++.|+. .
T Consensus 5 l~gH~~~V~~l~~s~----d---g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-----------~ 66 (753)
T 3jro_A 5 ANAHNELIHDAVLDY----Y---GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 66 (753)
T ss_dssp ---CCCCEEEECCCS----S---SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-----------S
T ss_pred cccCcceeEEEEECC----C---CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-----------C
Confidence 467888999888865 2 34566666555 99999963 234556677899999999998742 1
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEeCCC---
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~--~V~tL~-f~s~V~sV~~s~~--- 203 (838)
..+|++++. +++|++||+++++ .+..+. +...|.+++++++
T Consensus 67 ~~~l~s~s~---------------------------------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 113 (753)
T 3jro_A 67 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (753)
T ss_dssp CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEEeC---------------------------------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC
Confidence 235655332 2679999999997 555554 4579999999864
Q ss_pred -eEEEEe-CCeEEEEECCCCcee--eEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCC
Q 003221 204 -IVAVGL-ATQIYCFDALTLENK--FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (838)
Q Consensus 204 -iLaV~l-~~~I~IwD~~t~e~l--~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~ 279 (838)
+|+++. ++.|++||+.+.... ..+..++.+ . ..+++.+.... +
T Consensus 114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~-------------v-------~~l~~~p~~~~-------------~ 160 (753)
T 3jro_A 114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------V-------NSASWAPATIE-------------E 160 (753)
T ss_dssp SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC-------------E-------EEEEECCCC----------------
T ss_pred CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc-------------e-------EEEEecCcccc-------------c
Confidence 566655 568999999987432 233333221 1 22333321100 0
Q ss_pred CCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC
Q 003221 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (838)
Q Consensus 280 ~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~ 359 (838)
.+.. ...++...+. .+..+|.|++||+.++
T Consensus 161 ----------~~~~------------------------------------~~~~d~~~l~----sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 161 ----------DGEH------------------------------------NGTKESRKFV----TGGADNLVKIWKYNSD 190 (753)
T ss_dssp ----------------------------------------------------CGGGCCEE----EEETTSCEEEEEEETT
T ss_pred ----------cccc------------------------------------ccCCCCCEEE----EEECCCeEEEEeccCC
Confidence 0000 0000001111 3567899999999876
Q ss_pred ----cEEEEeccCCCCeEEEEECCC---CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE-eccccc
Q 003221 360 ----AIISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITS 431 (838)
Q Consensus 360 ----~~v~~~~aH~spIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L-~RG~t~ 431 (838)
.....+.+|..+|.+++|+|+ |.+|++++.||+ |+|||+.... + .....+ ....+.
T Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~-----~----------~~~~~~~~~~~~~ 254 (753)
T 3jro_A 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----G----------PWKKTLLKEEKFP 254 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSS-----S----------CCBCCBSSSSCCS
T ss_pred cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCC-----C----------cceeEEeccCCCC
Confidence 566788999999999999999 999999999886 9999996420 0 001111 111234
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 432 a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
..|++++|+|||++|++++.||+|+||++...+
T Consensus 255 ~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 579999999999999999999999999998644
No 84
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.81 E-value=4e-18 Score=189.60 Aligned_cols=239 Identities=13% Similarity=0.184 Sum_probs=162.8
Q ss_pred CeEEEEEecCc-EEEEEccCC---------CceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDA---------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTL 144 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~---------g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~ 144 (838)
+.+|++|..+| ++|||+... ......+..|.++|.+|.+.|.. ..+|++.+
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------------~~~l~s~~------- 201 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL------------NGYLLSAS------- 201 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS------------TTEEEEEC-------
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC------------CCeEEEEe-------
Confidence 56888888776 999999652 34455677889999999999752 11554321
Q ss_pred CCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeE-------EEEE-eCCCcEEEEEeCC---CeEEEEe-CCe
Q 003221 145 APGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-------EHVL-RFRSSVCMVRCSP---RIVAVGL-ATQ 212 (838)
Q Consensus 145 ~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~-------V~tL-~f~s~V~sV~~s~---~iLaV~l-~~~ 212 (838)
.+++|++||+.++.. ...+ .+...|.+|++++ .+|+++. ++.
T Consensus 202 --------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 202 --------------------------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp --------------------------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred --------------------------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 136899999987422 2334 3456899999987 3666654 678
Q ss_pred EEEEECCCC---ceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCC
Q 003221 213 IYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (838)
Q Consensus 213 I~IwD~~t~---e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps 289 (838)
|++||+++. +....+..+..+ . +.|+|.++.
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~-------------v-------~~i~~~p~~-------------------------- 289 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAE-------------V-------NCLSFNPYS-------------------------- 289 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSC-------------E-------EEEEECSSC--------------------------
T ss_pred EEEEECCCCCCCcceeEeecCCCC-------------e-------EEEEeCCCC--------------------------
Confidence 999999987 344444433221 1 223332210
Q ss_pred CCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC-CcEEEEeccC
Q 003221 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAH 368 (838)
Q Consensus 290 ~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s-~~~v~~~~aH 368 (838)
..++ +.+..+|.|+|||+.+ .+.+..+.+|
T Consensus 290 -~~~l------------------------------------------------~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 290 -EFIL------------------------------------------------ATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp -TTEE------------------------------------------------EEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred -CCEE------------------------------------------------EEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 0000 0245689999999998 5678899999
Q ss_pred CCCeEEEEECCCC-CEEEEEecCCCEEEEEecCCCcccCCCCCCcc--c-cCCcceEEEEEecccccccEEEEEEccCCC
Q 003221 369 TSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKY--D-WNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (838)
Q Consensus 369 ~spIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~--~-~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~ 444 (838)
..+|.+|+|+|+| .+||+++.+|+ |+|||+... +.... + -......++.+ .|+ ...|.+++|+|+++
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~~~p~~~ 391 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKI------GEEQSTEDAEDGPPELLFIH-GGH-TAKISDFSWNPNEP 391 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGT------TCCCCHHHHHHCCTTEEEEC-CCC-SSCEEEEEECSSST
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCC------ccccCccccccCCcceEEEc-CCC-CCCceEEEECCCCC
Confidence 9999999999999 57999999876 999999641 10000 0 00001244443 343 45799999999999
Q ss_pred -EEEEEeCCCeEEEEecCC
Q 003221 445 -WIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 445 -~Las~S~dGTVhIw~l~~ 462 (838)
.|++++.||+|+||++..
T Consensus 392 ~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 392 WIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TEEEEEETTSEEEEEEECH
T ss_pred CEEEEEECCCCEEEeEccc
Confidence 899999999999999864
No 85
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.4e-18 Score=184.84 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=77.2
Q ss_pred cCCCceEEEEECCCCcEE-EEecc-CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 345 MDNAGIVVVKDFVTRAII-SQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v-~~~~a-H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
+..+|.|+|||+.+++.+ ..|.. |..+|.+|+|+|+|.+||+++. + .|+|||+... .. ...+
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~-------~~-------~~~~ 251 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKD-------VG-------TLAY 251 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSS-------TT-------CBSS
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCC-------Cc-------ceee
Confidence 456899999999999877 88998 9999999999999999999994 6 6999999642 10 0000
Q ss_pred EEEecccccccE--EEEEEccCCCEEEEEeC-CCeEEEEecCCCC
Q 003221 423 YKLHRGITSATI--QDICFSHYSQWIAIVSS-KGTCHVFVLSPFG 464 (838)
Q Consensus 423 ~~L~RG~t~a~I--~sIaFSpDg~~Las~S~-dGTVhIw~l~~~g 464 (838)
..+. + +...+ .+++|+|||++|++++. +++++||+++...
T Consensus 252 ~~~~-~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 252 PTYT-I-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp CCCB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred cccc-c-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 0000 0 00112 47999999999999998 9999999997543
No 86
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.81 E-value=5.6e-18 Score=185.29 Aligned_cols=250 Identities=11% Similarity=0.052 Sum_probs=171.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------ceeEEeeeccCcEEEEEEecCCCCCCCCC
Q 003221 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (838)
Q Consensus 52 ~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g------~v~ells~hdg~V~~l~~lP~p~~~~~~d 124 (838)
..++++.|.-+.|... .+++|++|..+| ++|||+...+ .....+..|.++|.++++.|+.
T Consensus 77 ~~~h~~~V~~~~~~p~------~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~------- 143 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPH------NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA------- 143 (402)
T ss_dssp BCCCSSCEEEEEECTT------CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-------
T ss_pred EecCCCCEEEEEeCCC------CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-------
Confidence 3457888998888641 145777777665 9999996542 4456778899999999999852
Q ss_pred CcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEeC
Q 003221 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCS 201 (838)
Q Consensus 125 ~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~---f~s~V~sV~~s 201 (838)
..+|+..+. +++|++||+++++.+..+. +...|.+++++
T Consensus 144 -----~~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 144 -----QNVLLSAGC---------------------------------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp -----TTEEEEEET---------------------------------TSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred -----CCEEEEEcC---------------------------------CCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence 125554321 2679999999999999983 56799999998
Q ss_pred CC--eEEEE-eCCeEEEEECCCCceeeEE-eecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCccc
Q 003221 202 PR--IVAVG-LATQIYCFDALTLENKFSV-LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL 277 (838)
Q Consensus 202 ~~--iLaV~-l~~~I~IwD~~t~e~l~tL-~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l 277 (838)
++ +|+++ .++.|++||+.+++.+.++ ..+.... . ..+++.++.
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------~-------~~~~~~~~~-------------- 232 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR------------P-------VHAVFVSEG-------------- 232 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS------------C-------CEEEECSTT--------------
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc------------c-------eEEEEcCCC--------------
Confidence 75 56655 4678999999999887776 3333210 1 112232211
Q ss_pred CCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC
Q 003221 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (838)
Q Consensus 278 ~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~ 357 (838)
.+++. | .....+|.|+|||+.
T Consensus 233 --------------~~l~~-----------g----------------------------------~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 233 --------------KILTT-----------G----------------------------------FSRMSERQVALWDTK 253 (402)
T ss_dssp --------------EEEEE-----------E----------------------------------ECTTCCEEEEEEETT
T ss_pred --------------cEEEE-----------e----------------------------------ccCCCCceEEEEcCc
Confidence 01000 0 011468999999999
Q ss_pred CCcE-EEEec-cCCCCeEEEEECCCCCEEEEEe-cCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 003221 358 TRAI-ISQFK-AHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 434 (838)
Q Consensus 358 s~~~-v~~~~-aH~spIsaLaFSPdGtlLATAS-~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I 434 (838)
+++. +..+. .|...|.+++|+|+|.+|++++ .|| .|+|||+.. +. ..+..+..-.+...|
T Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg-~i~i~d~~~-------~~---------~~~~~l~~~~~~~~v 316 (402)
T 2aq5_A 254 HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS-SIRYFEITS-------EA---------PFLHYLSMFSSKESQ 316 (402)
T ss_dssp BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS-CEEEEEECS-------ST---------TCEEEEEEECCSSCC
T ss_pred cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC-eEEEEEecC-------CC---------cceEeecccccCCcc
Confidence 8654 33333 5788999999999999998655 555 499999964 21 113333321234579
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 435 QDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 435 ~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
.+++|+||++++++ .++++++|++...
T Consensus 317 ~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 317 RGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp SEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred cceEEeccccccee--cceeEEEEEcCCC
Confidence 99999999998874 6779999999864
No 87
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.81 E-value=2.1e-18 Score=180.22 Aligned_cols=232 Identities=13% Similarity=0.168 Sum_probs=160.2
Q ss_pred CeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
++.|+++... .+.+|+.......... ..|.++|.++++.|+. .+|+. ++
T Consensus 21 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~-------------~~l~~-~~--------------- 70 (337)
T 1gxr_A 21 GQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNPT-------------RHVYT-GG--------------- 70 (337)
T ss_dssp SCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSSS-------------SEEEE-EC---------------
T ss_pred CCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecCC-------------cEEEE-cC---------------
Confidence 5677666654 4666665433322233 3588999999999752 35554 21
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeE---EEEEe---CCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCce-
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLR---FRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLEN- 223 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~---V~tL~---f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~- 223 (838)
+++|++||+.+++. +..+. +...|.+++++++ +|+++. ++.|++||+.+++.
T Consensus 71 ------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 132 (337)
T 1gxr_A 71 ------------------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132 (337)
T ss_dssp ------------------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred ------------------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc
Confidence 16899999987753 33443 4578999999875 566655 67899999998763
Q ss_pred -eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhh
Q 003221 224 -KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (838)
Q Consensus 224 -l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~ 302 (838)
...+..+..+ . ..+++.++. .++
T Consensus 133 ~~~~~~~~~~~-------------i-------~~~~~~~~~----------------------------~~l-------- 156 (337)
T 1gxr_A 133 IKAELTSSAPA-------------C-------YALAISPDS----------------------------KVC-------- 156 (337)
T ss_dssp EEEEEECSSSC-------------E-------EEEEECTTS----------------------------SEE--------
T ss_pred eeeecccCCCc-------------e-------EEEEECCCC----------------------------CEE--------
Confidence 3333332221 1 122332210 000
Q ss_pred hhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC
Q 003221 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT 382 (838)
Q Consensus 303 k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt 382 (838)
. .+..+|.|++||+.+++.+..+..|..+|.+++|+|+|.
T Consensus 157 ------------------------------------~----~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 196 (337)
T 1gxr_A 157 ------------------------------------F----SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp ------------------------------------E----EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred ------------------------------------E----EEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC
Confidence 0 134578999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 383 lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
+|++++.+|. |++||+.. + ..+..+. ....|.+++|+||+++|++++.+|+|++|++..
T Consensus 197 ~l~~~~~dg~-i~~~d~~~-------~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 197 KLWTGGLDNT-VRSWDLRE-------G----------RQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp EEEEEETTSE-EEEEETTT-------T----------EEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred EEEEEecCCc-EEEEECCC-------C----------ceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 9999999775 99999954 2 3444443 234699999999999999999999999999976
Q ss_pred CCCccccccC
Q 003221 463 FGGDSGFQTL 472 (838)
Q Consensus 463 ~gg~~~~~~H 472 (838)
.. ...+..|
T Consensus 256 ~~-~~~~~~~ 264 (337)
T 1gxr_A 256 PD-KYQLHLH 264 (337)
T ss_dssp SC-EEEECCC
T ss_pred CC-eEEEcCC
Confidence 43 2334444
No 88
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.81 E-value=2.9e-18 Score=184.94 Aligned_cols=267 Identities=13% Similarity=0.118 Sum_probs=172.6
Q ss_pred eeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEE
Q 003221 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (838)
Q Consensus 97 v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~ 176 (838)
+..++..|.++|.+|++.| .+|++.+. +++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~---------------~~l~s~~~---------------------------------dg~i~ 39 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN---------------SFTVSCSG---------------------------------DGYLK 39 (397)
T ss_dssp EEEESSCSSSCEEEEEECS---------------SEEEEEET---------------------------------TSEEE
T ss_pred hhhhhhhhhcCeEEEEecC---------------CeEEEEcC---------------------------------CCEEE
Confidence 3567778999999999985 15654331 37899
Q ss_pred EEECCCCe------EEEEEe-CCCcEEEEEeCC---------CeEEEEe-CCeEEEEECCCCce-----eeEEeecCCcc
Q 003221 177 FYSFQSHC------YEHVLR-FRSSVCMVRCSP---------RIVAVGL-ATQIYCFDALTLEN-----KFSVLTYPVPQ 234 (838)
Q Consensus 177 IWDl~tg~------~V~tL~-f~s~V~sV~~s~---------~iLaV~l-~~~I~IwD~~t~e~-----l~tL~t~p~p~ 234 (838)
+||+.+++ .+..+. +...|.++++++ ++|+++. ++.|++||+.+++. +..+..++...
T Consensus 40 iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 119 (397)
T 1sq9_A 40 VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM 119 (397)
T ss_dssp EEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG
T ss_pred EEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc
Confidence 99999988 566665 567999999975 4566554 66899999998886 66666553100
Q ss_pred cCCCCccccccccceeEEc----c--cE-EEEeC--CCceeecCCCCC----CcccCCCCCCCCCCCCCCcceeeeehhh
Q 003221 235 LAGQGAVGINVGYGPMAVG----P--RW-LAYAS--NTLLLSNSGRLS----PQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (838)
Q Consensus 235 ~~~~~~~~~~~g~g~~Als----p--r~-LAys~--~~~~l~~~G~vs----~q~l~~~~~s~stsps~gslva~~A~ds 301 (838)
. .-....+++. + ++ |+.++ ..+.+|+..... .+.+. ..+ .
T Consensus 120 ~--------~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~----~------------ 172 (397)
T 1sq9_A 120 K--------KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN---WSP----T------------ 172 (397)
T ss_dssp G--------GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC---CCC----E------------
T ss_pred C--------CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee---ccC----c------------
Confidence 0 0014456777 5 56 66553 246677642200 00000 000 0
Q ss_pred hhhhhccccccccccccc-cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc---C---CCCeEE
Q 003221 302 SKQFAAGLSKTLSKYCQE-LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---H---TSPISA 374 (838)
Q Consensus 302 ~k~la~Gl~ktls~y~~~-~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a---H---~spIsa 374 (838)
.++...... .........+.+++.. .+. .+..+|.|+|||+.+++.+..+.. | ..+|.+
T Consensus 173 ---------~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~----~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 173 ---------LELQGTVESPMTPSQFATSVDISERG-LIA----TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp ---------EEEEEEECCSSSSCCCCCEEEECTTS-EEE----EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred ---------ceeeeeeccccCCCCCceEEEECCCc-eEE----EEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence 001000000 0000111112222222 222 457899999999999999999999 9 999999
Q ss_pred EEECCCCCEEEEEecC---CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc-----------ccccEEEEEEc
Q 003221 375 LCFDPSGTLLVTASVY---GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-----------TSATIQDICFS 440 (838)
Q Consensus 375 LaFSPdGtlLATAS~d---Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~-----------t~a~I~sIaFS 440 (838)
++|+|+|++|++++.+ | .|+|||+.. + ..+..+.... +...|.+++|+
T Consensus 239 i~~~~~~~~l~~~~~d~~~g-~i~i~d~~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFG-CITLYETEF-------G----------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp EEECSSTTEEEEEEEETTEE-EEEEEETTT-------C----------CEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred EEECCCCCEEEEEecCCCCc-eEEEEECCC-------C----------cccceeccCcccccccccccccCCcEEEEEEC
Confidence 9999999999999997 5 599999954 2 3555553200 34579999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCCCCccccc
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~~gg~~~~~ 470 (838)
||+++|++++.||+|+||++........+.
T Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 301 DSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 999999999999999999998765444444
No 89
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.81 E-value=4.6e-17 Score=175.81 Aligned_cols=271 Identities=15% Similarity=0.085 Sum_probs=179.7
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+.++++|..++ ++|||++ .+++...+..+. .+.++++.|+. ..|++....
T Consensus 2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~~~~-~~~~~~~s~dg-------------~~l~~~~~~-------------- 52 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVT-SNKVTATIPVGS-NPMGAVISPDG-------------TKVYVANAH-------------- 52 (391)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEEECSS-SEEEEEECTTS-------------SEEEEEEGG--------------
T ss_pred CEEEEEcCCCCEEEEEECC-CCeEEEEeecCC-CcceEEECCCC-------------CEEEEECCC--------------
Confidence 35677777655 9999995 466766676654 48899998753 244432211
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEe--CCeEEEEECCCCceeeEEee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL--ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l--~~~I~IwD~~t~e~l~tL~t 229 (838)
.++|++||+.+++.+..+..+..|.+++++++ .|+++. ++.|++||+.+++.+..+..
T Consensus 53 ------------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 53 ------------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp ------------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 26899999999999999999889999999875 565544 46899999999988776654
Q ss_pred cCCcccCCCCccccccccceeEEcc--cEEEEeC---CCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhh
Q 003221 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS---NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (838)
Q Consensus 230 ~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~---~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~ 304 (838)
+.. ...+++++ ++|++.. ..+.+|+... +..+..
T Consensus 115 ~~~--------------~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-------------------~~~~~~-------- 153 (391)
T 1l0q_A 115 GKS--------------PLGLALSPDGKKLYVTNNGDKTVSVINTVT-------------------KAVINT-------- 153 (391)
T ss_dssp SSS--------------EEEEEECTTSSEEEEEETTTTEEEEEETTT-------------------TEEEEE--------
T ss_pred CCC--------------cceEEECCCCCEEEEEeCCCCEEEEEECCC-------------------CcEEEE--------
Confidence 322 23566766 5564432 2455666311 000000
Q ss_pred hhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 003221 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 384 (838)
Q Consensus 305 la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlL 384 (838)
+.. ........+++..+.+.+ .+..+|.|.+||+.+++.+..+. |...+.+++|+|+|++|
T Consensus 154 --------~~~-------~~~~~~~~~~~dg~~l~~---~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l 214 (391)
T 1l0q_A 154 --------VSV-------GRSPKGIAVTPDGTKVYV---ANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKA 214 (391)
T ss_dssp --------EEC-------CSSEEEEEECTTSSEEEE---EETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEE
T ss_pred --------Eec-------CCCcceEEECCCCCEEEE---EeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEE
Confidence 000 000001111222222211 24567999999999998877776 45678999999999999
Q ss_pred EEEec--CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE-EEEeCCCeEEEEecC
Q 003221 385 VTASV--YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLS 461 (838)
Q Consensus 385 ATAS~--dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L-as~S~dGTVhIw~l~ 461 (838)
++++. .+..|++||+.. + ..+..+..+ ..+.+++|+||+++| ++++.+++|+||++.
T Consensus 215 ~~~~~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 215 YVTNVDKYFNTVSMIDTGT-------N----------KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EEEEECSSCCEEEEEETTT-------T----------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEecCcCCCcEEEEECCC-------C----------eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 99884 345699999854 2 355555433 248899999999988 566889999999998
Q ss_pred CCCCccccccC
Q 003221 462 PFGGDSGFQTL 472 (838)
Q Consensus 462 ~~gg~~~~~~H 472 (838)
.......+..|
T Consensus 275 ~~~~~~~~~~~ 285 (391)
T 1l0q_A 275 TNTITATMAVG 285 (391)
T ss_dssp TTEEEEEEECS
T ss_pred CCcEEEEEECC
Confidence 75444444444
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7.3e-18 Score=185.51 Aligned_cols=268 Identities=11% Similarity=0.087 Sum_probs=160.3
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEcc--CCCceeEEeeeccCcEEEEEEecCCCCCCCCC---Cccc
Q 003221 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVE--DASNFNELVSKRDGPVSFLQMQPFPVKDDGCE---GFRK 128 (838)
Q Consensus 55 ~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~--~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d---~F~~ 128 (838)
+...|..+.|.. + ++.|++|..+| ++|||++ ..+.+...+..+ .|..+.+.|.+....... .+..
T Consensus 110 h~~~v~~~~~~~----~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 110 CSSTVTQITMIP----N---FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp CSSCEEEEEECT----T---SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred CCCCEEEEEEeC----C---CCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEEcC
Confidence 556677777753 2 45666666655 9999995 345555555544 566665554210000000 0111
Q ss_pred CCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCcEEEEEeCCC--
Q 003221 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSPR-- 203 (838)
Q Consensus 129 srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f---~s~V~sV~~s~~-- 203 (838)
...+|++.+ . +++|++||+++++.+..+.. ...|.+++++++
T Consensus 181 ~~~~l~~~~-----------------------~----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 227 (437)
T 3gre_A 181 EKSLLVALT-----------------------N----------LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC 227 (437)
T ss_dssp SCEEEEEEE-----------------------T----------TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC
T ss_pred CCCEEEEEe-----------------------C----------CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC
Confidence 223443321 1 37899999999999999975 579999999875
Q ss_pred eEEEEe-CCeEEEEECCCCceeeEEe-ecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCC
Q 003221 204 IVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (838)
Q Consensus 204 iLaV~l-~~~I~IwD~~t~e~l~tL~-t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~ 281 (838)
+|+++. ++.|++||+.+++++.++. .+..+ ...+ ++.+.
T Consensus 228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------v~~~-------~~~~~------------------- 268 (437)
T 3gre_A 228 VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP-------------ITHV-------EVCQF------------------- 268 (437)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEBCTTCEE-------------EEEE-------EECTT-------------------
T ss_pred EEEEEcCCCeEEEEEcCCccEEEEEecCCCCc-------------eEEE-------Eeccc-------------------
Confidence 666655 5679999999988777664 22111 1122 22110
Q ss_pred CCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE
Q 003221 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (838)
Q Consensus 282 ~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~ 361 (838)
.+|. +.+ +. .+..+|.|+|||+.+++.
T Consensus 269 ----~s~~-~~~--------------------------------------------l~----s~~~dg~i~iwd~~~~~~ 295 (437)
T 3gre_A 269 ----YGKN-SVI--------------------------------------------VV----GGSSKTFLTIWNFVKGHC 295 (437)
T ss_dssp ----TCTT-EEE--------------------------------------------EE----EESTTEEEEEEETTTTEE
T ss_pred ----cCCC-ccE--------------------------------------------EE----EEcCCCcEEEEEcCCCcE
Confidence 0000 000 00 245688899999988887
Q ss_pred EEEecc--------------------------CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccC-CCCC--Cc
Q 003221 362 ISQFKA--------------------------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGN--HK 412 (838)
Q Consensus 362 v~~~~a--------------------------H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~-~~G~--~~ 412 (838)
+..+.+ |..+|.+|+|+ +|.+|+|++.||+ |+|||+....... ..+. ..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~~ 373 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS-IVMFSLNELSSSKAVISPSRFS 373 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE-EEEEETTCGGGCEEEECC--CC
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe-EEEEECCCcccceEEecccccC
Confidence 777764 55668889999 7899999999775 9999996421000 0000 00
Q ss_pred c-----ccCCcceEEE-----------EEecccccccEEEEEEccC--CCEEEEEeCCCeEEEEe
Q 003221 413 Y-----DWNSSHVHLY-----------KLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 413 ~-----~~~~~~~~l~-----------~L~RG~t~a~I~sIaFSpD--g~~Las~S~dGTVhIw~ 459 (838)
. .+......+. ....+ +...|.+|+|+++ +.+|++++.||+|+||+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 374 DVFIPTQVTANLTMLLRKMKRTSTHSVDDSLY-HHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEEEEeecceEEEEEecccccccccCcccc-cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0 0000000000 00111 3457999999998 88999999999999995
No 91
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.81 E-value=6.2e-18 Score=179.91 Aligned_cols=257 Identities=11% Similarity=0.090 Sum_probs=163.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEE--eeeccCcEEEEEEecCCCCCCCCCCcccC
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~g~v~el--ls~hdg~V~~l~~lP~p~~~~~~d~F~~s 129 (838)
..+++.|.-+.|.. + ++.|++|..+ .++|||++. ++.... +..|.++|.++++.|+.
T Consensus 49 ~~h~~~v~~~~~~~----~---~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~------------ 108 (372)
T 1k8k_C 49 KEHNGQVTGVDWAP----D---SNRIVTCGTDRNAYVWTLKG-RTWKPTLVILRINRAARCVRWAPNE------------ 108 (372)
T ss_dssp ECCSSCEEEEEEET----T---TTEEEEEETTSCEEEEEEET-TEEEEEEECCCCSSCEEEEEECTTS------------
T ss_pred cCCCCcccEEEEeC----C---CCEEEEEcCCCeEEEEECCC-CeeeeeEEeecCCCceeEEEECCCC------------
Confidence 45677788888865 2 3466666655 599999964 443333 35678899999999752
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeE---EEEEe--CCCcEEEEEeCCC-
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLR--FRSSVCMVRCSPR- 203 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~---V~tL~--f~s~V~sV~~s~~- 203 (838)
.+|++.+. .+.|++||+++++. ...+. +...|.+++++++
T Consensus 109 -~~l~~~~~---------------------------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 109 -KKFAVGSG---------------------------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp -SEEEEEET---------------------------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred -CEEEEEeC---------------------------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 35655332 26799999988763 33332 3578999999875
Q ss_pred -eEEEEe-CCeEEEEECCCCc------------------eeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCC
Q 003221 204 -IVAVGL-ATQIYCFDALTLE------------------NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNT 263 (838)
Q Consensus 204 -iLaV~l-~~~I~IwD~~t~e------------------~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~ 263 (838)
+|+++. ++.|++||+.... .+..+..+..+ . ..+++.+
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v-------~~~~~~~-- 212 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-------------V-------HGVCFSA-- 212 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-------------E-------EEEEECS--
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe-------------E-------EEEEECC--
Confidence 666655 6689999976432 11111111000 0 0011111
Q ss_pred ceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCcccccccccc
Q 003221 264 LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 343 (838)
Q Consensus 264 ~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~ 343 (838)
..+.+.
T Consensus 213 ----------------------------------------------------------------------~~~~l~---- 218 (372)
T 1k8k_C 213 ----------------------------------------------------------------------NGSRVA---- 218 (372)
T ss_dssp ----------------------------------------------------------------------SSSEEE----
T ss_pred ----------------------------------------------------------------------CCCEEE----
Confidence 111111
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCC--Cc---ccCCCCCC-------
Q 003221 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP--SC---MRSGSGNH------- 411 (838)
Q Consensus 344 ~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p--~~---~~~~~G~~------- 411 (838)
.+..+|.|++||+.+++.+..+..|..+|.+++|+|+|++|+++ .+|. |+||++.. .. ........
T Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296 (372)
T ss_dssp EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETTTTEEEECCCCCCC--------
T ss_pred EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCcCceEEEeeccCccccchhhhc
Confidence 24568999999999999999999999999999999999999988 6565 99999964 10 00000000
Q ss_pred --cccc---CCcceEE------EEEecccccccEEEEEEc-cCC---CEEEEEeCCCeEEEEecCC
Q 003221 412 --KYDW---NSSHVHL------YKLHRGITSATIQDICFS-HYS---QWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 412 --~~~~---~~~~~~l------~~L~RG~t~a~I~sIaFS-pDg---~~Las~S~dGTVhIw~l~~ 462 (838)
..-| ....... ..+..|+ ...|.+++|. +|| ++|++++.||+|+||++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 297 TARERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred chhhhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0000 0000111 3333454 4579999965 777 9999999999999999865
No 92
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.2e-18 Score=187.66 Aligned_cols=176 Identities=13% Similarity=0.187 Sum_probs=128.3
Q ss_pred CEEEEEECC--CCeEEEEE---eCCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceee----EEeecCCcccCCCCc
Q 003221 173 TAVRFYSFQ--SHCYEHVL---RFRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKF----SVLTYPVPQLAGQGA 240 (838)
Q Consensus 173 ~tV~IWDl~--tg~~V~tL---~f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~----tL~t~p~p~~~~~~~ 240 (838)
++|++||+. +++.+..+ .+...|.+++++++ +|+++. ++.|++||+.+++... .+..|..+
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~------- 197 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM------- 197 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC-------
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCc-------
Confidence 789999999 88888887 45689999999875 666665 4689999998876433 22222211
Q ss_pred cccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccccccccccccc
Q 003221 241 VGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (838)
Q Consensus 241 ~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~ 320 (838)
. ..|+|.++. .++.+++
T Consensus 198 ------v-------~~~~~sp~~-------------------------~~~~~l~------------------------- 214 (450)
T 2vdu_B 198 ------L-------TDVHLIKDS-------------------------DGHQFII------------------------- 214 (450)
T ss_dssp ------E-------EEEEEEECT-------------------------TSCEEEE-------------------------
T ss_pred ------e-------EEEEEcCCC-------------------------CCCcEEE-------------------------
Confidence 1 223333210 0000000
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 321 ~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~-~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
+++.+|.|+|||+.+++.+.. +.+|..+|.+++|+ +|++|++++.||+ |+|||+
T Consensus 215 -----------------------s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~ 269 (450)
T 2vdu_B 215 -----------------------TSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDW 269 (450)
T ss_dssp -----------------------EEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEET
T ss_pred -----------------------EEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEEC
Confidence 234678999999999888877 56999999999999 9999999999765 999999
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecc-----------------------cccccEEEEEEccCCCEEEEEe-CCCeE
Q 003221 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----------------------ITSATIQDICFSHYSQWIAIVS-SKGTC 455 (838)
Q Consensus 400 ~p~~~~~~~G~~~~~~~~~~~~l~~L~RG-----------------------~t~a~I~sIaFSpDg~~Las~S-~dGTV 455 (838)
.. | ..+..+..+ .....|.+|+|+||+++|++++ .+++|
T Consensus 270 ~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 270 KT-------G----------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp TT-------C----------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred CC-------C----------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence 64 3 345554321 1223699999999999999999 89999
Q ss_pred EEEec
Q 003221 456 HVFVL 460 (838)
Q Consensus 456 hIw~l 460 (838)
+||++
T Consensus 333 ~iw~~ 337 (450)
T 2vdu_B 333 IILEM 337 (450)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.81 E-value=4e-18 Score=186.42 Aligned_cols=111 Identities=16% Similarity=0.103 Sum_probs=81.3
Q ss_pred ceEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEecCCC---EEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 349 GIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 349 G~V~VwDl~s~~~v~--~~~aH~spIsaLaFSPdGtlLATAS~dGt---~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+.+.+|+..+++.+. ....|...|.+++|+|+|++|++++.++. .+++|++... . .......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~-------~------~~~~~~~ 263 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSG-------N------TSVLRSK 263 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETT-------E------EEEEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccc-------e------ecceeee
Confidence 456777777766543 45679999999999999999999998764 5888988431 0 0001223
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccc-cccCCC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSS 474 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~-~~~H~~ 474 (838)
.+. + +...|++|+|||||++||+++.|++|+||++........ +++|..
T Consensus 264 ~~~-~-~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~ 313 (365)
T 4h5i_A 264 QVT-N-RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF 313 (365)
T ss_dssp EEE-S-SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS
T ss_pred eec-C-CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC
Confidence 332 3 234699999999999999999999999999987655444 467753
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.81 E-value=1.4e-17 Score=180.01 Aligned_cols=222 Identities=10% Similarity=0.080 Sum_probs=160.3
Q ss_pred CceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCE
Q 003221 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (838)
Q Consensus 95 g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~t 174 (838)
..+...+..|.++|.++++.|+. ..+|++.+. +++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~------------~~~l~s~~~---------------------------------dg~ 97 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTH------------PTTVAVGSK---------------------------------GGD 97 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSC------------TTEEEEEEB---------------------------------TSC
T ss_pred cceEEeccCCCCCEEEEEECCCC------------CCEEEEEcC---------------------------------CCe
Confidence 34455677899999999999852 136655331 267
Q ss_pred EEEEECCCCeEEEEEe---CCCcEEEEEeCC---CeEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCcccccccc
Q 003221 175 VRFYSFQSHCYEHVLR---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (838)
Q Consensus 175 V~IWDl~tg~~V~tL~---f~s~V~sV~~s~---~iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~ 247 (838)
|+|||+.+++....+. +...|.++++++ ++|+++. ++.|++||+.+ +.+..+..+... .
T Consensus 98 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~-------------~ 163 (383)
T 3ei3_B 98 IILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSW-------------D 163 (383)
T ss_dssp EEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCS-------------S
T ss_pred EEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCC-------------C
Confidence 9999999999888886 567999999988 3666655 67899999996 445555433210 0
Q ss_pred ceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCC
Q 003221 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (838)
Q Consensus 248 g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s 327 (838)
..+ ..+++.++.. +++
T Consensus 164 ~~v----~~~~~~~~~~----------------------------~l~-------------------------------- 179 (383)
T 3ei3_B 164 YWY----CCVDVSVSRQ----------------------------MLA-------------------------------- 179 (383)
T ss_dssp CCE----EEEEEETTTT----------------------------EEE--------------------------------
T ss_pred CCe----EEEEECCCCC----------------------------EEE--------------------------------
Confidence 001 2233333210 000
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEecCCCcccC
Q 003221 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRS 406 (838)
Q Consensus 328 ~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~ 406 (838)
.+..+|.|++||+ +++.+..+.+|..+|.+++|+|+|+ +|++++.||+ |+|||+...
T Consensus 180 ----------------~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~---- 237 (383)
T 3ei3_B 180 ----------------TGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKLWDLRNI---- 237 (383)
T ss_dssp ----------------EEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EEEEEGGGC----
T ss_pred ----------------EECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EEEEeCCCC----
Confidence 2356899999999 5778899999999999999999999 9999999765 999999641
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 407 ~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp-Dg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
......+..+ + +...|.+++|+| |+++|++++.||+|+||++........+..|.
T Consensus 238 ---------~~~~~~~~~~--~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 238 ---------KDKNSYIAEM--P-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp ---------CSTTCEEEEE--E-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred ---------CcccceEEEe--c-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 0011344454 2 345799999999 99999999999999999998877666666664
No 95
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.80 E-value=1.2e-17 Score=183.85 Aligned_cols=187 Identities=11% Similarity=0.021 Sum_probs=123.9
Q ss_pred CCEEEEEEC-CCCeEEEEEeCC-CcEEEEEeCC-----CeEEE-EeCCeEEEEECCCCceeeEEeecCCcccCCCCcccc
Q 003221 172 PTAVRFYSF-QSHCYEHVLRFR-SSVCMVRCSP-----RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 243 (838)
Q Consensus 172 p~tV~IWDl-~tg~~V~tL~f~-s~V~sV~~s~-----~iLaV-~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~ 243 (838)
+++|++|++ .+|+.+..+..+ ..|..++|++ .+||. +.++.|+|||+.|+++++++..+....
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v--------- 226 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ--------- 226 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC------------
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce---------
Confidence 689999999 558888877654 3454444444 57777 556789999999999999997644320
Q ss_pred ccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCC
Q 003221 244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (838)
Q Consensus 244 ~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~ 323 (838)
. +...+||.++...+..... + +..+.+
T Consensus 227 ---~-----~v~~vafSpdG~~lvs~s~----------------~-----------~~~w~l------------------ 253 (356)
T 2w18_A 227 ---A-----SVCHKAYSEMGLLFIVLSH----------------P-----------CAKESE------------------ 253 (356)
T ss_dssp ---C-----CCEEEEEEETTEEEEEEC-----------------------------------------------------
T ss_pred ---e-----eeEEEEECCCCCEEEEecc----------------C-----------CCccee------------------
Confidence 0 1122345443221100000 0 000000
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe-----ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEe
Q 003221 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-----KAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (838)
Q Consensus 324 gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~-----~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwd 398 (838)
+++..|++|++||..+++.+..+ .+|...+.+..+ +|.++|+++.||+ |||||
T Consensus 254 -------------------aSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWD 311 (356)
T 2w18_A 254 -------------------SLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWD 311 (356)
T ss_dssp -----------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEE
T ss_pred -------------------eccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCc-EEEEE
Confidence 13567899999999999887665 377766544444 4899999999876 99999
Q ss_pred cCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 399 i~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
+.. | +.+.+| .|++...+.+++|||||++|++|+.|+||+||++
T Consensus 312 l~t-------G----------k~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLL-------G----------QCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTT-------C----------SEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCC-------C----------cEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 964 4 577777 4555545667999999999999999999999986
No 96
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.80 E-value=3.1e-18 Score=183.85 Aligned_cols=226 Identities=15% Similarity=0.199 Sum_probs=162.6
Q ss_pred cCcEEEEEccCCCceeEEeeeccCcEEEEEEec-CCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCcc
Q 003221 83 QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMM 161 (838)
Q Consensus 83 ~~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP-~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~ 161 (838)
+..++||+++ .+...+++..|.++|.++++.| ++ .+|++.+.
T Consensus 22 ~~~~~v~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~-------------~~l~~~~~----------------------- 64 (408)
T 4a11_B 22 ESTRRVLGLE-LNKDRDVERIHGGGINTLDIEPVEG-------------RYMLSGGS----------------------- 64 (408)
T ss_dssp HHHHHHHTEE-ECTTEEECCCCSSCEEEEEECTTTC-------------CEEEEEET-----------------------
T ss_pred cCcceeeccc-cCcceeeeeccCCcEEEEEEecCCC-------------CEEEEEcC-----------------------
Confidence 3457889885 4667788889999999999998 42 36655331
Q ss_pred CCCCCCCCCCCCEEEEEECCCCeEEEEEe--------------CCCcEEEEEeCC-C--eEEEEe-CCeEEEEECCCCce
Q 003221 162 DSQSGNCVNSPTAVRFYSFQSHCYEHVLR--------------FRSSVCMVRCSP-R--IVAVGL-ATQIYCFDALTLEN 223 (838)
Q Consensus 162 d~~~~~~~~~p~tV~IWDl~tg~~V~tL~--------------f~s~V~sV~~s~-~--iLaV~l-~~~I~IwD~~t~e~ 223 (838)
+++|++||+.+++....+. +...|.++++++ + +|+++. ++.|++||+.+++.
T Consensus 65 ----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 65 ----------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp ----------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred ----------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 2679999999887665554 667999999987 2 566655 67899999999887
Q ss_pred eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhh
Q 003221 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (838)
Q Consensus 224 l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k 303 (838)
...+.. +.+ ...+ ++.... ..+.+++
T Consensus 135 ~~~~~~-~~~-------------~~~~-------~~~~~~-------------------------~~~~~~~-------- 160 (408)
T 4a11_B 135 ADVFNF-EET-------------VYSH-------HMSPVS-------------------------TKHCLVA-------- 160 (408)
T ss_dssp EEEEEC-SSC-------------EEEE-------EECSSC-------------------------SSCCEEE--------
T ss_pred ceeccC-CCc-------------eeee-------EeecCC-------------------------CCCcEEE--------
Confidence 666542 221 1111 221100 0000000
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-
Q 003221 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT- 382 (838)
Q Consensus 304 ~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt- 382 (838)
.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|.
T Consensus 161 ----------------------------------------~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 200 (408)
T 4a11_B 161 ----------------------------------------VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200 (408)
T ss_dssp ----------------------------------------EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT
T ss_pred ----------------------------------------EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc
Confidence 234678999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-------------cccccccEEEEEEccCCCEEEEE
Q 003221 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-------------RGITSATIQDICFSHYSQWIAIV 449 (838)
Q Consensus 383 lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-------------RG~t~a~I~sIaFSpDg~~Las~ 449 (838)
+|++++.+|. |+|||+.... ..+..+. ...+...|.+++|+||+++|+++
T Consensus 201 ll~~~~~dg~-i~i~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 201 ILATASADSR-VKLWDVRRAS----------------GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp EEEEEETTSC-EEEEETTCSS----------------CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCc-EEEEECCCCC----------------cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 6999999876 9999996421 0111110 01234579999999999999999
Q ss_pred eCCCeEEEEecCCCCCc
Q 003221 450 SSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 450 S~dGTVhIw~l~~~gg~ 466 (838)
+.||+|+||++......
T Consensus 264 ~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENT 280 (408)
T ss_dssp ETTSCEEEEETTTCCBC
T ss_pred cCCCeEEEEECCCCccc
Confidence 99999999999875543
No 97
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.80 E-value=1.2e-17 Score=176.30 Aligned_cols=208 Identities=14% Similarity=0.180 Sum_probs=145.0
Q ss_pred EeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEE
Q 003221 100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS 179 (838)
Q Consensus 100 lls~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWD 179 (838)
++..|.++|.+++|.|++ .+||..+. +++|+|||
T Consensus 4 ~~~~h~~~V~~~~~s~~g-------------~~las~s~---------------------------------D~~v~iw~ 37 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYG-------------KRMATCSS---------------------------------DKTIKIFE 37 (297)
T ss_dssp ECCSCSSCEEEEEECTTS-------------SEEEEEET---------------------------------TSCEEEEE
T ss_pred eccCCcCceEEEEECCCC-------------CEEEEEeC---------------------------------CCEEEEEe
Confidence 567799999999999753 26665331 27899999
Q ss_pred CCC--CeEEEEEe-CCCcEEEEEeCC----CeEEEEe-CCeEEEEECCCCc--eeeEEeecCCcccCCCCccccccccce
Q 003221 180 FQS--HCYEHVLR-FRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYGP 249 (838)
Q Consensus 180 l~t--g~~V~tL~-f~s~V~sV~~s~----~iLaV~l-~~~I~IwD~~t~e--~l~tL~t~p~p~~~~~~~~~~~~g~g~ 249 (838)
+.+ ++.+.++. +...|.+|+|++ ++|+++. ++.|++||+.+++ .+.++..|..+ .
T Consensus 38 ~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------v-- 102 (297)
T 2pm7_B 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS-------------V-- 102 (297)
T ss_dssp BCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC-------------E--
T ss_pred cCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc-------------e--
Confidence 974 46677876 456999999963 4676655 6789999998874 33333333221 1
Q ss_pred eEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCc
Q 003221 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (838)
Q Consensus 250 ~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~ 329 (838)
+.++|.++. .+.++
T Consensus 103 -----~~v~~~p~~--------------------------~g~~l----------------------------------- 116 (297)
T 2pm7_B 103 -----NSVQWAPHE--------------------------YGPML----------------------------------- 116 (297)
T ss_dssp -----EEEEECCGG--------------------------GCSEE-----------------------------------
T ss_pred -----eEEEeCcCC--------------------------CCcEE-----------------------------------
Confidence 123332210 00000
Q ss_pred cCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCC-------------CCEEEEEecCCCEE
Q 003221 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPS-------------GTLLVTASVYGNNI 394 (838)
Q Consensus 330 s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~--~v~~~~aH~spIsaLaFSPd-------------GtlLATAS~dGt~I 394 (838)
. .+..||.|+|||+.++. ....+.+|..+|.+++|+|+ +++||||+.||+ |
T Consensus 117 ---------~----s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~-v 182 (297)
T 2pm7_B 117 ---------L----VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-V 182 (297)
T ss_dssp ---------E----EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC-E
T ss_pred ---------E----EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc-E
Confidence 0 24568999999998763 24678899999999999997 579999999876 9
Q ss_pred EEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC---CEEEEEeCCCeEEEEecCCC
Q 003221 395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 395 rVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg---~~Las~S~dGTVhIw~l~~~ 463 (838)
+|||+.. +. .....+..| +|+ ...|.+|+|+||+ ++||+++.|++|+||++...
T Consensus 183 ~lwd~~~-------~~------~~~~~~~~l-~~H-~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 183 KIWKYNS-------DA------QTYVLESTL-EGH-SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEEEEET-------TT------TEEEEEEEE-CCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEEEcC-------CC------ceEEEEEEe-cCC-CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9999853 10 011233444 454 4579999999995 89999999999999998753
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.80 E-value=1.8e-19 Score=193.77 Aligned_cols=200 Identities=12% Similarity=0.126 Sum_probs=127.1
Q ss_pred CEEEEEECCCC--eEEEEEe-CCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCc---eeeEEeecCCcccCCCCcccc
Q 003221 173 TAVRFYSFQSH--CYEHVLR-FRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGI 243 (838)
Q Consensus 173 ~tV~IWDl~tg--~~V~tL~-f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e---~l~tL~t~p~p~~~~~~~~~~ 243 (838)
++|+|||+.++ +.+..+. +...|.+++++++ +|+++. ++.|++||+.+++ ....+..+..+
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~---------- 102 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA---------- 102 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC----------
T ss_pred CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc----------
Confidence 67999999998 6666665 4569999999875 666655 6689999999876 22222222221
Q ss_pred ccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCC
Q 003221 244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (838)
Q Consensus 244 ~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~ 323 (838)
. ..++|.++.
T Consensus 103 ---v-------~~~~~~~~~------------------------------------------------------------ 112 (377)
T 3dwl_C 103 ---A-------TFVRWSPNE------------------------------------------------------------ 112 (377)
T ss_dssp ---E-------EEEECCTTS------------------------------------------------------------
T ss_pred ---e-------EEEEECCCC------------------------------------------------------------
Confidence 1 112222210
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCc---EEEEecc-CCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 324 gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~---~v~~~~a-H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
+.+. .+..+|.|+|||+.+++ ....+.. |..+|.+++|+|+|++||+++.||+ |+|||+
T Consensus 113 ------------~~l~----~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~ 175 (377)
T 3dwl_C 113 ------------DKFA----VGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSA 175 (377)
T ss_dssp ------------SCCE----EEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC-EEEEEE
T ss_pred ------------CEEE----EEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE-EEEEEE
Confidence 0000 23568899999999877 4678887 9999999999999999999999876 999998
Q ss_pred CCCcccCCCCCCccccCC---cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC----ccccccC
Q 003221 400 MPSCMRSGSGNHKYDWNS---SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG----DSGFQTL 472 (838)
Q Consensus 400 ~p~~~~~~~G~~~~~~~~---~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg----~~~~~~H 472 (838)
......... ....|.. ....+..+ + +...|.+++|+||+++|++++.||+|+||++..... ...+..|
T Consensus 176 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (377)
T 3dwl_C 176 YVRDVDAKP--EASVWGSRLPFNTVCAEY--P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS 250 (377)
T ss_dssp CCSSCC-CC--CSCSSCSCCCEEEEEECC--C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS
T ss_pred EecccCCCc--cccccccccchhhhhhcc--c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC
Confidence 531000000 0000000 11334444 3 445799999999999999999999999999987766 4556666
Q ss_pred CC
Q 003221 473 SS 474 (838)
Q Consensus 473 ~~ 474 (838)
..
T Consensus 251 ~~ 252 (377)
T 3dwl_C 251 QL 252 (377)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.80 E-value=1.6e-17 Score=175.00 Aligned_cols=236 Identities=12% Similarity=0.157 Sum_probs=168.1
Q ss_pred CCCCcEEEEEEeeccCCCCCCCe-EEEEEecC-cEEEEEc-cCCCceeEEeee--ccCcEEEEEEecCCCCCCCCCCccc
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQ-VLLLGYQN-GFQVLDV-EDASNFNELVSK--RDGPVSFLQMQPFPVKDDGCEGFRK 128 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~-vL~lG~~~-G~qVWdv-~~~g~v~ells~--hdg~V~~l~~lP~p~~~~~~d~F~~ 128 (838)
.+.+.|..+.|.. + ++ .|++|..+ .+++||+ +. +.. ..+.. |.++|.++++.| +
T Consensus 54 ~~~~~v~~~~~~~----~---~~~~l~~~~~dg~i~~wd~~~~-~~~-~~~~~~~~~~~v~~l~~~~-~----------- 112 (342)
T 1yfq_A 54 RYKHPLLCCNFID----N---TDLQIYVGTVQGEILKVDLIGS-PSF-QALTNNEANLGICRICKYG-D----------- 112 (342)
T ss_dssp ECSSCEEEEEEEE----S---SSEEEEEEETTSCEEEECSSSS-SSE-EECBSCCCCSCEEEEEEET-T-----------
T ss_pred ecCCceEEEEECC----C---CCcEEEEEcCCCeEEEEEeccC-Cce-EeccccCCCCceEEEEeCC-C-----------
Confidence 4566777777765 2 45 56666655 5999999 64 444 56677 899999999996 2
Q ss_pred CCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCC---------CeEEEEEeCCCcEEEEE
Q 003221 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS---------HCYEHVLRFRSSVCMVR 199 (838)
Q Consensus 129 srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~t---------g~~V~tL~f~s~V~sV~ 199 (838)
.+|+..+. +++|++||+++ ++.+..+.+...|.+++
T Consensus 113 --~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 157 (342)
T 1yfq_A 113 --DKLIAASW---------------------------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp --TEEEEEET---------------------------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred --CEEEEEcC---------------------------------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence 25554321 27899999998 77777778888999999
Q ss_pred eCCCeEEEEe-CCeEEEEECCC-CceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeC-CCceeecCCCCCCcc
Q 003221 200 CSPRIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS-NTLLLSNSGRLSPQN 276 (838)
Q Consensus 200 ~s~~iLaV~l-~~~I~IwD~~t-~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~-~~~~l~~~G~vs~q~ 276 (838)
++++.|+++. ++.|++||+.+ ++........+... .. +.+++.+ +.
T Consensus 158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----------~i-------~~i~~~~~~~------------- 206 (342)
T 1yfq_A 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY-----------QI-------RDVALLPKEQ------------- 206 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS-----------CE-------EEEEECSGGG-------------
T ss_pred ecCCcEEEEeCCCeEEEEECCccccccceeeecCCCC-----------ce-------eEEEECCCCC-------------
Confidence 9998776665 55899999998 65433322211110 01 2223322 10
Q ss_pred cCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEEC
Q 003221 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (838)
Q Consensus 277 l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl 356 (838)
.++ . .+..+|.|+|||+
T Consensus 207 ---------------~~l--------------------------------------------~----~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 207 ---------------EGY--------------------------------------------A----CSSIDGRVAVEFF 223 (342)
T ss_dssp ---------------CEE--------------------------------------------E----EEETTSEEEEEEC
T ss_pred ---------------CEE--------------------------------------------E----EEecCCcEEEEEE
Confidence 000 0 1345889999999
Q ss_pred CCC------cEEEEeccCCC---------CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE
Q 003221 357 VTR------AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (838)
Q Consensus 357 ~s~------~~v~~~~aH~s---------pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~ 421 (838)
... +.+..+.+|.. +|.+++|+|+|++||+++.+|. |+|||+.. + ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~ 285 (342)
T 1yfq_A 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT-------R----------KK 285 (342)
T ss_dssp CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EE
T ss_pred cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCcc-------H----------hH
Confidence 876 77888888866 9999999999999999999886 99999964 3 45
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCe-EEEEec
Q 003221 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGT-CHVFVL 460 (838)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGT-VhIw~l 460 (838)
+..+ .+++...|.+++ ||+++|++++.||+ .+.|..
T Consensus 286 ~~~~-~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 286 IKNF-AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEC-CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred hhhh-hcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 6665 444356799999 99999999999999 665554
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.79 E-value=1.9e-18 Score=192.13 Aligned_cols=111 Identities=18% Similarity=0.293 Sum_probs=87.0
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+..+|.|++||+.. +.+..+.+|..+|.+|+|+|++. +||+++.||+ |+|||+.... .. ..+
T Consensus 227 g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~-----~~---------~~~- 289 (435)
T 4e54_B 227 GDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVR-----GK---------ASF- 289 (435)
T ss_dssp ECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCC-----SS---------SCC-
T ss_pred EeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEeccccc-----cc---------ceE-
Confidence 45689999999864 56788999999999999999986 8889999775 9999996420 00 011
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
....+ +...|.+|+|+|||++|++++.||+|+||++........+..|.
T Consensus 290 ~~~~~-h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 290 LYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp SBCCB-CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred EEeee-ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 11123 34579999999999999999999999999998877666666664
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.6e-17 Score=174.82 Aligned_cols=212 Identities=14% Similarity=0.182 Sum_probs=148.5
Q ss_pred ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEE
Q 003221 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (838)
Q Consensus 96 ~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV 175 (838)
.+..++..|.++|.++++.|+. .+||+.+. +++|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~-------------~~l~~~~~---------------------------------dg~i 35 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYG-------------KRLATCSS---------------------------------DKTI 35 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSS-------------SEEEEEET---------------------------------TSCE
T ss_pred CccEEecCCcccEEEEEEcCCC-------------CEEEEEEC---------------------------------CCcE
Confidence 4567788999999999999752 36665321 2679
Q ss_pred EEEECC--CCeEEEEEe-CCCcEEEEEeC----CCeEEEEe-CCeEEEEECCCCc--eeeEEeecCCcccCCCCcccccc
Q 003221 176 RFYSFQ--SHCYEHVLR-FRSSVCMVRCS----PRIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINV 245 (838)
Q Consensus 176 ~IWDl~--tg~~V~tL~-f~s~V~sV~~s----~~iLaV~l-~~~I~IwD~~t~e--~l~tL~t~p~p~~~~~~~~~~~~ 245 (838)
+|||+. +++.+..+. +...|.+++++ .++|+++. ++.|++||+.+++ ....+..+..+
T Consensus 36 ~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------ 103 (379)
T 3jrp_A 36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS------------ 103 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------
T ss_pred EEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc------------
Confidence 999998 556777775 45799999997 45676665 5689999999886 33333333221
Q ss_pred ccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCC
Q 003221 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (838)
Q Consensus 246 g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs 325 (838)
. ..|++.++. .+.++
T Consensus 104 -v-------~~~~~~~~~--------------------------~~~~l------------------------------- 118 (379)
T 3jrp_A 104 -V-------NSVQWAPHE--------------------------YGPLL------------------------------- 118 (379)
T ss_dssp -E-------EEEEECCGG--------------------------GCSEE-------------------------------
T ss_pred -e-------EEEEeCCCC--------------------------CCCEE-------------------------------
Confidence 1 122332210 00000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEecC
Q 003221 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVY 390 (838)
Q Consensus 326 ~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~--~v~~~~aH~spIsaLaFSP-------------dGtlLATAS~d 390 (838)
..+..+|.|+|||+.+.. ....+.+|..+|.+++|+| +|.+|++++.+
T Consensus 119 -----------------~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 181 (379)
T 3jrp_A 119 -----------------LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181 (379)
T ss_dssp -----------------EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred -----------------EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence 023568999999998873 4557789999999999999 79999999998
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCeEEEEecCCC
Q 003221 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 391 Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD---g~~Las~S~dGTVhIw~l~~~ 463 (838)
|. |+|||+... . .....+..+ .+ +...|.+++|+|| +++|++++.||+|+||++...
T Consensus 182 g~-i~i~d~~~~-------~------~~~~~~~~~-~~-h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 182 NL-VKIWKYNSD-------A------QTYVLESTL-EG-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp SC-EEEEEEETT-------T------TEEEEEEEE-CC-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred Ce-EEEEEecCC-------C------cceeeEEEE-ec-ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 86 999999531 0 011233344 34 3457999999999 999999999999999999764
No 102
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.79 E-value=1.8e-16 Score=166.47 Aligned_cols=215 Identities=12% Similarity=0.101 Sum_probs=150.1
Q ss_pred ceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEE
Q 003221 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (838)
Q Consensus 96 ~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV 175 (838)
.++.+|.+|.++|.+|++.|+. ..+||..+. +++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~------------~~~l~S~s~---------------------------------D~~i 63 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQF------------PDMILSASR---------------------------------DKTI 63 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTC------------TTEEEEEET---------------------------------TSCE
T ss_pred EEEEEECCccCCEEEEEEeCCC------------CCEEEEEcC---------------------------------CCeE
Confidence 4566788999999999999851 126654321 3789
Q ss_pred EEEECCCCe-----EEEEEeC-CCcEEEEEeCCC--eEEEE-eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccc
Q 003221 176 RFYSFQSHC-----YEHVLRF-RSSVCMVRCSPR--IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 176 ~IWDl~tg~-----~V~tL~f-~s~V~sV~~s~~--iLaV~-l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
+|||+.+++ ...+++. ...|.+++++++ +|+++ .++.|++|+............+...
T Consensus 64 ~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~------------- 130 (340)
T 4aow_A 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD------------- 130 (340)
T ss_dssp EEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred EEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-------------
Confidence 999997654 4556654 569999999875 56654 4668999999987665544332221
Q ss_pred cceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCC
Q 003221 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (838)
Q Consensus 247 ~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~ 326 (838)
. . .+.+... + ..+
T Consensus 131 ~--~-----~~~~~~~---------------------------~-~~l-------------------------------- 143 (340)
T 4aow_A 131 V--L-----SVAFSSD---------------------------N-RQI-------------------------------- 143 (340)
T ss_dssp E--E-----EEEECTT---------------------------S-SCE--------------------------------
T ss_pred e--e-----EEEEeec---------------------------C-ccc--------------------------------
Confidence 0 0 0111110 0 000
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCC--CEEEEEecCCCEEEEEecCCCc
Q 003221 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPSC 403 (838)
Q Consensus 327 s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~-v~~~~aH~spIsaLaFSPdG--tlLATAS~dGt~IrVwdi~p~~ 403 (838)
.++..+|.+++||+..... ...+.+|...|.+++|++++ .++++++.|++ |++||+..
T Consensus 144 ----------------~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~-- 204 (340)
T 4aow_A 144 ----------------VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLAN-- 204 (340)
T ss_dssp ----------------EEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTT--
T ss_pred ----------------eeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCC--
Confidence 0235688999999987654 45667899999999999875 57899999776 99999964
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCcccccc
Q 003221 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (838)
Q Consensus 404 ~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~ 471 (838)
+ ..+..+ .++ ...|.+|+|+||+++|++++.||+|+||++........+..
T Consensus 205 -----~----------~~~~~~-~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 255 (340)
T 4aow_A 205 -----C----------KLKTNH-IGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255 (340)
T ss_dssp -----T----------EEEEEE-CCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred -----C----------ceeeEe-cCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence 2 355555 453 45799999999999999999999999999987554444433
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.78 E-value=5.6e-18 Score=180.66 Aligned_cols=208 Identities=14% Similarity=0.155 Sum_probs=140.3
Q ss_pred eEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEE
Q 003221 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (838)
Q Consensus 98 ~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~I 177 (838)
+.++..|.++|.+++|.|++ .+||..+. +++|+|
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g-------------~~lasgs~---------------------------------D~~v~l 39 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYG-------------TRLATCSS---------------------------------DRSVKI 39 (316)
T ss_dssp --------CCEEEEEECGGG-------------CEEEEEET---------------------------------TTEEEE
T ss_pred eeecccccCeEEEeeEcCCC-------------CEEEEEeC---------------------------------CCeEEE
Confidence 45677899999999999752 26655321 378999
Q ss_pred EECCCCe--EEEEEe-CCCcEEEEEeCC----CeEEEEe-CCeEEEEECCCCc--eeeEEeecCCcccCCCCcccccccc
Q 003221 178 YSFQSHC--YEHVLR-FRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGY 247 (838)
Q Consensus 178 WDl~tg~--~V~tL~-f~s~V~sV~~s~----~iLaV~l-~~~I~IwD~~t~e--~l~tL~t~p~p~~~~~~~~~~~~g~ 247 (838)
||+++++ .+.+++ +...|.+|+|++ ++|+++. ++.|++||+.+++ ...++..|..+ .
T Consensus 40 wd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------V 106 (316)
T 3bg1_A 40 FDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS-------------V 106 (316)
T ss_dssp EEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC-------------C
T ss_pred EEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc-------------e
Confidence 9999885 456665 457999999963 4666654 6789999999874 34444334332 1
Q ss_pred ceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCC
Q 003221 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (838)
Q Consensus 248 g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s 327 (838)
+.|+|.++. .+.++
T Consensus 107 -------~~v~~~p~~--------------------------~g~~l--------------------------------- 120 (316)
T 3bg1_A 107 -------NSVCWAPHD--------------------------YGLIL--------------------------------- 120 (316)
T ss_dssp -------CEEEECCTT--------------------------TCSCE---------------------------------
T ss_pred -------EEEEECCCC--------------------------CCcEE---------------------------------
Confidence 223333210 00000
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEECCC-----------------CCEEEEE
Q 003221 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPS-----------------GTLLVTA 387 (838)
Q Consensus 328 ~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~---~v~~~~aH~spIsaLaFSPd-----------------GtlLATA 387 (838)
+++..||.|+|||+..+. ....+.+|..+|.+++|+|+ |++|||+
T Consensus 121 ---------------asgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 185 (316)
T 3bg1_A 121 ---------------ACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG 185 (316)
T ss_dssp ---------------EEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC
T ss_pred ---------------EEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe
Confidence 024568999999998763 24567899999999999998 5799999
Q ss_pred ecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEecCC
Q 003221 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 388 S~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg----~~Las~S~dGTVhIw~l~~ 462 (838)
+.||+ |+|||+... + ....+..| .|+ ...|.+++|+||+ ++||+++.||+|+||++..
T Consensus 186 s~D~~-v~lWd~~~~------~--------~~~~~~~l-~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 186 GCDNL-IKLWKEEED------G--------QWKEEQKL-EAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp BTTSB-CCEEEECTT------S--------CEEEEECC-BCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cCCCe-EEEEEeCCC------C--------ccceeeec-ccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 99776 999998531 1 01234444 454 4579999999997 8999999999999999976
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.78 E-value=1.2e-17 Score=183.98 Aligned_cols=256 Identities=14% Similarity=0.044 Sum_probs=135.6
Q ss_pred CeEEEEEecC-cEEEEEccCCCcee-----EEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCC
Q 003221 75 KQVLLLGYQN-GFQVLDVEDASNFN-----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (838)
Q Consensus 75 ~~vL~lG~~~-G~qVWdv~~~g~v~-----ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~ 148 (838)
.++|+.|..+ .++|||+.. +++. ..+.+|.+.|..|+|.|..... ......+||.++.
T Consensus 101 ~~~las~~~d~~v~lw~~~~-~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~-----~~~d~~~las~s~---------- 164 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKN-ETIITQHVLGGKSGHHNFVNDIDIADVYSAD-----NRLAEQVIASVGD---------- 164 (393)
T ss_dssp EEEEEEEETTSCEEEEEEET-TEEEEEEEECTTTSCSSCEEEEEEEEEECTT-----CSEEEEEEEEEET----------
T ss_pred CCEEEEEeCCCcEEEEECCC-CccceeeeecccCCCCCceEEEEEccccccc-----cCCCCCEEEEEEC----------
Confidence 4567777765 599999964 3332 2357899999999999842110 0011236654331
Q ss_pred CCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEE-EEeCCCcEEEEEeCCC---eEEEEe-CCeEEEEECCCCce
Q 003221 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEH-VLRFRSSVCMVRCSPR---IVAVGL-ATQIYCFDALTLEN 223 (838)
Q Consensus 149 ~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~-tL~f~s~V~sV~~s~~---iLaV~l-~~~I~IwD~~t~e~ 223 (838)
+++|+|||++++..+. .+.+++.|.+|+|+|+ +|+++. ++.|++||+.+++.
T Consensus 165 -----------------------D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 165 -----------------------DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp -----------------------TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred -----------------------CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 3899999998876554 5578899999999974 566655 56899999999877
Q ss_pred eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCce-eec-CCCCCCcccCCCCCCCCCCCCCCcceeeeehhh
Q 003221 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL-LSN-SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (838)
Q Consensus 224 l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~-l~~-~G~vs~q~l~~~~~s~stsps~gslva~~A~ds 301 (838)
...+..++.. ....++ ........ ... .|.. ..+..
T Consensus 222 ~~~~~~~~~~-------------~~~~~~-----s~~~~~~~~~~~~~~~~-------------------~~v~~----- 259 (393)
T 4gq1_A 222 AEENSQTELV-------------KNPWLL-----TLNTLPLVNTCHSSGIA-------------------SSLAN----- 259 (393)
T ss_dssp ---------C-------------SCCCSE-----EEESGGGC------CCS-------------------SSCSE-----
T ss_pred cccccccCCc-------------ccceEE-----ecccccceeeeeccccc-------------------cccee-----
Confidence 6554433221 000000 11110000 000 0000 00000
Q ss_pred hhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC--
Q 003221 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-- 379 (838)
Q Consensus 302 ~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSP-- 379 (838)
..+. .++++.+. .+..+++|+|||+..++....+..|...+..+.|.|
T Consensus 260 -------------------------v~~~-~~dg~~l~----s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~ 309 (393)
T 4gq1_A 260 -------------------------VRWI-GSDGSGIL----AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV 309 (393)
T ss_dssp -------------------------EEEE-TTTTCEEE----EECTTSEEEEEEC-------------------CCSCSE
T ss_pred -------------------------eeee-cCCCCEEE----EEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence 0000 00111111 356789999999998887777777776666655554
Q ss_pred ------------------CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003221 380 ------------------SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (838)
Q Consensus 380 ------------------dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 441 (838)
++.++++++.|| .|+|||+.+ | ..+..+..+ ...|.+|+|||
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~-------~----------~~~~~~~~~--~~~V~svafsp 369 (393)
T 4gq1_A 310 QGISLFPSLLGACPHPRYMDYFATAHSQHG-LIQLINTYE-------K----------DSNSIPIQL--GMPIVDFCWHQ 369 (393)
T ss_dssp EEECSSCCSSCCEECSSCTTEEEEEETTTT-EEEEEETTC-------T----------TCCEEEEEC--SSCEEEEEECT
T ss_pred ccccccCcceeEEEccCCCCEEEEEECCCC-EEEEEECCC-------C----------cEEEEecCC--CCcEEEEEEcC
Confidence 344667777766 599999964 2 233333322 34799999999
Q ss_pred CCCEEEEEeCCCeEEEEecCC
Q 003221 442 YSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 442 Dg~~Las~S~dGTVhIw~l~~ 462 (838)
||++||+++++| +.||.|..
T Consensus 370 dG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 370 DGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp TSSEEEEEESSE-EEEEEEGG
T ss_pred CCCEEEEEeCCC-eEEEEEeC
Confidence 999999999876 66676643
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.78 E-value=2.4e-17 Score=179.11 Aligned_cols=115 Identities=13% Similarity=0.198 Sum_probs=82.5
Q ss_pred cCCCce-EEEEECCCCcEEEEec-c-CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccC---CCC-----CCcc
Q 003221 345 MDNAGI-VVVKDFVTRAIISQFK-A-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS---GSG-----NHKY 413 (838)
Q Consensus 345 g~~~G~-V~VwDl~s~~~v~~~~-a-H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~---~~G-----~~~~ 413 (838)
++.||+ |+|||+.+++.+..|. + |..+|.+|+|+|+|++||+++.||+ |+|||+....... ..+ ....
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 291 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKGWINMKYFQS 291 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTTTEECCCCCC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccceeecccccc
Confidence 567898 9999999999999998 5 9999999999999999999999765 9999996421000 000 0000
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 414 ~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
.|. ...+.+..+. ......++|++|+++|++++.||++++|++...+
T Consensus 292 ~~~---~~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 292 EWS---LCNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSC---SEEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ccc---eeEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 000 1122222221 1234669999999999999999999999997643
No 106
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.77 E-value=6.5e-16 Score=169.15 Aligned_cols=225 Identities=8% Similarity=0.034 Sum_probs=163.8
Q ss_pred CeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+++|+++..+ .+++||++ .++....+..|...+..+++.|+. ..|++...
T Consensus 181 ~~~~~s~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~--------------- 231 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLK-TLAYKATVDLTGKWSKILLYDPIR-------------DLVYCSNW--------------- 231 (433)
T ss_dssp TEEEEEEGGGTEEEEEETT-TCCEEEEEECSSSSEEEEEEETTT-------------TEEEEEET---------------
T ss_pred CEEEEEECCCCEEEEEECC-CceEEEEEcCCCCCeeEEEEcCCC-------------CEEEEEec---------------
Confidence 5788888775 49999995 466666777788899999999752 24443221
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEe---------CCeEEEEECCCCc
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL---------ATQIYCFDALTLE 222 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l---------~~~I~IwD~~t~e 222 (838)
..++|++||+++++.+..+.....+.+++++++ .|+++. ++.|++||+.+++
T Consensus 232 -----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 232 -----------------ISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK 294 (433)
T ss_dssp -----------------TTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred -----------------CCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc
Confidence 126899999999999999888888999999875 666655 5589999999987
Q ss_pred eeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhh
Q 003221 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (838)
Q Consensus 223 ~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~ 302 (838)
.+..+.. +. .++.+++.++. ..+.+
T Consensus 295 ~~~~~~~-~~--------------------~~~~~~~~~~g---------------------------~~l~~------- 319 (433)
T 3bws_A 295 LIDTIGP-PG--------------------NKRHIVSGNTE---------------------------NKIYV------- 319 (433)
T ss_dssp EEEEEEE-EE--------------------CEEEEEECSST---------------------------TEEEE-------
T ss_pred EEeeccC-CC--------------------CcceEEECCCC---------------------------CEEEE-------
Confidence 6555421 11 01223333211 00000
Q ss_pred hhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC
Q 003221 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT 382 (838)
Q Consensus 303 k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt 382 (838)
.+..+|.|.+||+.+++.+..+. |...+.+++|+|+|+
T Consensus 320 -----------------------------------------~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~ 357 (433)
T 3bws_A 320 -----------------------------------------SDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK 357 (433)
T ss_dssp -----------------------------------------EETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS
T ss_pred -----------------------------------------EecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC
Confidence 12357899999999998887776 778899999999999
Q ss_pred EEEEEecCC--------------CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003221 383 LLVTASVYG--------------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 383 lLATAS~dG--------------t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las 448 (838)
+|++++.+. ..|++||+.. + ..+..+.. ...+.+++|+|||++|++
T Consensus 358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-------~----------~~~~~~~~---~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-------D----------TVKEFWEA---GNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-------T----------EEEEEEEC---SSSEEEEEECTTSCEEEE
T ss_pred EEEEEecCCCccccccccccccceEEEEEECCC-------C----------cEEEEecC---CCCCceEEEcCCCCEEEE
Confidence 999988742 2699999854 3 34555543 236899999999999998
Q ss_pred EeC-CCeEEEEecCC
Q 003221 449 VSS-KGTCHVFVLSP 462 (838)
Q Consensus 449 ~S~-dGTVhIw~l~~ 462 (838)
++. |++|+||+++.
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999874
No 107
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.77 E-value=3.3e-16 Score=185.56 Aligned_cols=244 Identities=15% Similarity=0.204 Sum_probs=177.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCc
Q 003221 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (838)
Q Consensus 53 ~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srp 131 (838)
..+...|.-+.|.. + ++.|++|..+| ++|||+. .++....+..|.++|.++++.|+. +
T Consensus 52 ~~~~~~v~~~~~s~----~---~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~v~~~~~s~~~-------------~ 110 (814)
T 3mkq_A 52 QVTETPVRAGKFIA----R---KNWIIVGSDDFRIRVFNYN-TGEKVVDFEAHPDYIRSIAVHPTK-------------P 110 (814)
T ss_dssp ECCSSCEEEEEEEG----G---GTEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSSS-------------S
T ss_pred ecCCCcEEEEEEeC----C---CCEEEEEeCCCeEEEEECC-CCcEEEEEecCCCCEEEEEEeCCC-------------C
Confidence 34667788888866 2 45677777665 9999995 466777788899999999999752 4
Q ss_pred EEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCC-eEEEEEe-CCCcEEEEEeCC-C--eEE
Q 003221 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLR-FRSSVCMVRCSP-R--IVA 206 (838)
Q Consensus 132 LLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg-~~V~tL~-f~s~V~sV~~s~-~--iLa 206 (838)
+|++.+. +++|++||+.++ .....+. +...|.++++++ + .|+
T Consensus 111 ~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 111 YVLSGSD---------------------------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp EEEEEET---------------------------------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EEEEEcC---------------------------------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 6654321 278999999987 6667775 457899999988 3 566
Q ss_pred EEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCC
Q 003221 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (838)
Q Consensus 207 V~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~s 285 (838)
++. ++.|++||+.+++....+..+... +. ..++|.+..
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~------------~v-------~~~~~~~~~---------------------- 196 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQER------------GV-------NYVDYYPLP---------------------- 196 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTT------------CC-------CEEEECCST----------------------
T ss_pred EEeCCCeEEEEECCCCcceeEEecCCCC------------CE-------EEEEEEECC----------------------
Confidence 555 678999999988877776653321 01 233333200
Q ss_pred CCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003221 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (838)
Q Consensus 286 tsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~ 365 (838)
.+.+++ .+..+|.|++||+.+++.+..+
T Consensus 197 ----~~~~l~------------------------------------------------~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 197 ----DKPYMI------------------------------------------------TASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp ----TCCEEE------------------------------------------------EECTTSEEEEEETTTTEEEEEE
T ss_pred ----CCCEEE------------------------------------------------EEeCCCEEEEEECCCCcEEEEE
Confidence 000000 2356899999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-
Q 003221 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ- 444 (838)
Q Consensus 366 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~- 444 (838)
.+|..+|.+++|+|+|.+|++++.||+ |+|||+.. + ..+..+..+ ...|++++|+||++
T Consensus 225 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~~~--~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSST-------Y----------KVEKTLNVG--LERSWCIATHPTGRK 284 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTT-------C----------SEEEEECCS--SSSEEEEEECTTCGG
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEeecC--CCcEEEEEEccCCCc
Confidence 999999999999999999999999886 99999854 2 456666432 34799999999998
Q ss_pred -EEEEEeCCCeEEEEecCCCC
Q 003221 445 -WIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 445 -~Las~S~dGTVhIw~l~~~g 464 (838)
++++++ ++.+.+|++....
T Consensus 285 ~~~~~~~-~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 285 NYIASGF-DNGFTVLSLGNDE 304 (814)
T ss_dssp GEEEEEE-TTEEEEEECSCCS
T ss_pred eEEEEEe-CCCEEEEEcCCCC
Confidence 455555 6668899886543
No 108
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.1e-16 Score=193.84 Aligned_cols=247 Identities=11% Similarity=0.113 Sum_probs=165.8
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcE
Q 003221 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (838)
Q Consensus 54 ~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpL 132 (838)
++++.|..+.|+. + +++|++|..+| ++|||... .++...+ .|.++|..|+|.| . .+
T Consensus 15 gh~~~V~~lafsp----d---g~~lAsgs~Dg~I~lw~~~~-~~~~~~~-~~~~~V~~l~fsp-g-------------~~ 71 (902)
T 2oaj_A 15 GMSSKPIAAAFDF----T---QNLLAIATVTGEVHIYGQQQ-VEVVIKL-EDRSAIKEMRFVK-G-------------IY 71 (902)
T ss_dssp ECSSCEEEEEEET----T---TTEEEEEETTSEEEEECSTT-CEEEEEC-SSCCCEEEEEEET-T-------------TE
T ss_pred CCCCCcEEEEECC----C---CCEEEEEeCCCEEEEEeCCC-cEEEEEc-CCCCCEEEEEEcC-C-------------CE
Confidence 4678899999976 3 46888888776 99999853 3333222 3678999999996 2 15
Q ss_pred EEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEe-
Q 003221 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL- 209 (838)
Q Consensus 133 LavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l- 209 (838)
|+.++. +++|+|||+++++.++++.++..|.+++++++ +|+++.
T Consensus 72 L~S~s~---------------------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~ 118 (902)
T 2oaj_A 72 LVVINA---------------------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ 118 (902)
T ss_dssp EEEEET---------------------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET
T ss_pred EEEEEC---------------------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC
Confidence 654332 37899999999999999998899999999885 777766
Q ss_pred CCeEEEEECCCCceeeEEeecCCcc--cCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCC
Q 003221 210 ATQIYCFDALTLENKFSVLTYPVPQ--LAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (838)
Q Consensus 210 ~~~I~IwD~~t~e~l~tL~t~p~p~--~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~sts 287 (838)
++.|++||+.+++.. .+....... ....+. .+++ ..|+|.++.
T Consensus 119 dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h------~~~V----~sl~~sp~~------------------------ 163 (902)
T 2oaj_A 119 NGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAAR------LSPI----VSIQWNPRD------------------------ 163 (902)
T ss_dssp TSCEEEEETTTTEEE-EEEECCHHHHHTCSSSC------CCCC----CEEEEETTE------------------------
T ss_pred CCcEEEEECCCCccc-cceeccccccccccccC------CCCe----EEEEEccCC------------------------
Confidence 568999999988652 111100000 000000 0000 223332210
Q ss_pred CCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a 367 (838)
+ ..+. .+..+|.| |||+.+++.+..+..
T Consensus 164 ---~--------------------------------------------~~l~----~g~~dg~v-lWd~~~~~~~~~~~~ 191 (902)
T 2oaj_A 164 ---I--------------------------------------------GTVL----ISYEYVTL-TYSLVENEIKQSFIY 191 (902)
T ss_dssp ---E--------------------------------------------EEEE----EECSSCEE-EEETTTTEEEEEECC
T ss_pred ---C--------------------------------------------CEEE----EEeCCCcE-EEECCCCceEEEEec
Confidence 0 0000 23567899 999999998888876
Q ss_pred C------------------CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE--Ee-
Q 003221 368 H------------------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK--LH- 426 (838)
Q Consensus 368 H------------------~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~--L~- 426 (838)
| ..+|.+++|+|+|++|||++.||+ |+|||+.. | +.+.. +.
T Consensus 192 ~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~-------g----------~~~~~r~l~~ 253 (902)
T 2oaj_A 192 ELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANS-------G----------HMIMARTVFE 253 (902)
T ss_dssp CBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTT-------C----------CEEEEECSSC
T ss_pred ccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCC-------C----------cEEEEEeecc
Confidence 6 578999999999999999999886 99999964 3 23322 21
Q ss_pred -ccc------------ccccEEEEEEc----cCC-CEEEEEeCC-----CeEEEEecC
Q 003221 427 -RGI------------TSATIQDICFS----HYS-QWIAIVSSK-----GTCHVFVLS 461 (838)
Q Consensus 427 -RG~------------t~a~I~sIaFS----pDg-~~Las~S~d-----GTVhIw~l~ 461 (838)
.++ +...|++++|+ ||+ ..|++++.+ .++++|++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 011 23369999995 554 567777665 379999864
No 109
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2e-16 Score=163.81 Aligned_cols=210 Identities=11% Similarity=0.084 Sum_probs=152.5
Q ss_pred CceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCE
Q 003221 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (838)
Q Consensus 95 g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~t 174 (838)
-.+...+..|.++|.++++ |+. .+|++.+. +++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~-------------~~l~s~~~---------------------------------dg~ 40 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD-------------SKVASVSR---------------------------------DGT 40 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET-------------TEEEEEET---------------------------------TSE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC-------------CEEEEEEc---------------------------------CCc
Confidence 3456778899999999998 642 25654331 378
Q ss_pred EEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCc---eeeEEeecCCcccCCCCcccccccc
Q 003221 175 VRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINVGY 247 (838)
Q Consensus 175 V~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e---~l~tL~t~p~p~~~~~~~~~~~~g~ 247 (838)
|++||+.+++....+.. ...|.+++++++ +|+++. ++.|++||+.+.. ....+..+..+ .
T Consensus 41 v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~-------------i 107 (313)
T 3odt_A 41 VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN-------------V 107 (313)
T ss_dssp EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC-------------E
T ss_pred EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC-------------E
Confidence 99999999998887754 679999999875 666655 5689999987653 23333222221 1
Q ss_pred ceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCC
Q 003221 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (838)
Q Consensus 248 g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s 327 (838)
..+++.++ +
T Consensus 108 -------~~~~~~~~------------------------------~---------------------------------- 116 (313)
T 3odt_A 108 -------CSLSFQDG------------------------------V---------------------------------- 116 (313)
T ss_dssp -------EEEEEETT------------------------------E----------------------------------
T ss_pred -------EEEEecCC------------------------------E----------------------------------
Confidence 11222110 0
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccC
Q 003221 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRS 406 (838)
Q Consensus 328 ~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~ 406 (838)
+ ..+..+|.|++|| .++.+..+..|..+|.+++|+| ++.+|++++.+|. |++||..
T Consensus 117 ----------l----~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~d~~------ 173 (313)
T 3odt_A 117 ----------V----ISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT-IKLWQND------ 173 (313)
T ss_dssp ----------E----EEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-EEEEETT------
T ss_pred ----------E----EEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC-EEEEecC------
Confidence 0 0234689999999 6778889999999999999999 9999999999876 9999952
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCC
Q 003221 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 407 ~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
..+..+ .+.+...|.+++|+|+++ |++++.||+|+||++........+..|.
T Consensus 174 -------------~~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 174 -------------KVIKTF-SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp -------------EEEEEE-CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred -------------ceEEEE-eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 244444 343556799999999999 9999999999999998766555666664
No 110
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.75 E-value=1e-16 Score=175.64 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=70.4
Q ss_pred ceEEEEECCC-CcEEEEeccCCCCe---------------EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCc
Q 003221 349 GIVVVKDFVT-RAIISQFKAHTSPI---------------SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (838)
Q Consensus 349 G~V~VwDl~s-~~~v~~~~aH~spI---------------saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~ 412 (838)
|.|+|||+.+ ++.+..+.+|...+ ..++|+|+|++||+++.||+ |+|||+.........+...
T Consensus 306 ~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~ 384 (447)
T 3dw8_B 306 LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF-FRMFDRNTKRDITLEASRE 384 (447)
T ss_dssp SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE-EEEEETTTCCEEEEECCST
T ss_pred CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE-EEEEEcCCCcceeeeeccc
Confidence 8999999997 88888999996533 34999999999999999775 9999996421000000000
Q ss_pred cccC-CcceEEEEEe------------cccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 413 YDWN-SSHVHLYKLH------------RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 413 ~~~~-~~~~~l~~L~------------RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
.... .......... .-.....|.+++|+|++.+||+++.++ ++||.-
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 385 NNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 0000 0000000000 001123588999999999999999887 788863
No 111
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1e-17 Score=194.00 Aligned_cols=111 Identities=11% Similarity=-0.014 Sum_probs=87.5
Q ss_pred cCCCceEEEEECCCCc-EEEEeccCCCCeEEE--EECCCC-CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 345 MDNAGIVVVKDFVTRA-IISQFKAHTSPISAL--CFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~-~v~~~~aH~spIsaL--aFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
+..||+|+|||+.++. ....+.+|..+|.+| +|+|+| .+|||||.||+ |+|||+.. + .
T Consensus 283 gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t-vklWD~~~-------~----------~ 344 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY-FYIFNPKD-------I----------A 344 (524)
T ss_dssp EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE-EEEECGGG-------H----------H
T ss_pred EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe-EEEEECCC-------C----------C
Confidence 5679999999998764 456789999999999 689998 99999999775 99999953 1 2
Q ss_pred EEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccCCC
Q 003221 421 HLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 421 ~l~~L~RG~t~-a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
++..+. |+.. ..|.+|+|+||++.|++++.|+||+||++........+.+|..
T Consensus 345 ~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~ 398 (524)
T 2j04_B 345 TTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398 (524)
T ss_dssp HHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred cccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC
Confidence 222222 2222 2478999999999999999999999999987666566777754
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.74 E-value=2.6e-16 Score=163.28 Aligned_cols=102 Identities=22% Similarity=0.226 Sum_probs=77.9
Q ss_pred cCCCceEEEEECCCCcEEEEec-------------cCCCCeEEEEECCC---CCEEEEEecCCCEEEEEecCCCcccCCC
Q 003221 345 MDNAGIVVVKDFVTRAIISQFK-------------AHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGS 408 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~-------------aH~spIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~~~ 408 (838)
+..+|.|+|||+.+++.+..+. .|...+.+++|+|+ +.+|++++.+|. +.+|+...
T Consensus 130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~------- 201 (351)
T 3f3f_A 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKD------- 201 (351)
T ss_dssp EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTT-------
T ss_pred ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCC-------
Confidence 4568999999998876544433 68899999999997 999999999775 65665532
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEecCCCC
Q 003221 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 409 G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg----~~Las~S~dGTVhIw~l~~~g 464 (838)
+ ....+..+ .+ +...|.+++|+||+ ++|++++.||+|+||++....
T Consensus 202 ~--------~~~~~~~~-~~-h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 202 G--------KLHVAAKL-PG-HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp S--------CEEEEEEC-CC-CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred C--------ceeeeeec-CC-CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 2 11223343 34 34579999999998 899999999999999997643
No 113
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.72 E-value=3.8e-16 Score=171.27 Aligned_cols=214 Identities=14% Similarity=0.121 Sum_probs=152.2
Q ss_pred CCEEEEEECCCCeEEEEEeC--CCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f--~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
.++|++||+.+++....+.. ...|.+++++++ +|+++. ++.|++||+.+++.+.++..+..+
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------- 178 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------- 178 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc-------------
Confidence 47899999999999888876 578999999875 777765 668999999999988887765543
Q ss_pred cceeEEcccEEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCC
Q 003221 247 YGPMAVGPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (838)
Q Consensus 247 ~g~~Alspr~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~g 324 (838)
...+++.+++|+.++. .+.+|+.-.. +..+. ++..+ .+
T Consensus 179 v~~~~~~~~~l~~~~~dg~i~i~d~~~~------------------~~~~~----------------~~~~~------~~ 218 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRSGAIHHHDVRIA------------------NHQIG----------------TLQGH------SS 218 (401)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSS------------------SCEEE----------------EEECC------SS
T ss_pred eEEEEECCCEEEEEcCCCCEEEEecccC------------------cceee----------------EEcCC------CC
Confidence 3456777777776653 4566764110 00000 00000 00
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEe--cCCCEEEEEecCC
Q 003221 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTAS--VYGNNINIFRIMP 401 (838)
Q Consensus 325 s~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdG-tlLATAS--~dGt~IrVwdi~p 401 (838)
....+.+++..+.+. .+..+|.|+|||+.+++.+..+..|..+|.+++|+|+| .+|++++ .+| .|++||+..
T Consensus 219 ~v~~~~~~~~~~~l~----s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~d~~~ 293 (401)
T 4aez_A 219 EVCGLAWRSDGLQLA----SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFWNAAT 293 (401)
T ss_dssp CEEEEEECTTSSEEE----EEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC-EEEEEETTT
T ss_pred CeeEEEEcCCCCEEE----EEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC-EEEEEECCC
Confidence 011111222222222 45678999999999999999999999999999999976 5777765 555 599999954
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEecCCC
Q 003221 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPF 463 (838)
Q Consensus 402 ~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S--~dGTVhIw~l~~~ 463 (838)
+ ..+..+.. ...|.+++|+||+++|++++ .||+|+||++...
T Consensus 294 -------~----------~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 294 -------G----------ARVNTVDA---GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp -------C----------CEEEEEEC---SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred -------C----------CEEEEEeC---CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 3 35566642 34699999999999999954 8999999999764
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.72 E-value=6.1e-16 Score=171.99 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=82.7
Q ss_pred cCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 345 MDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 345 g~~~G~V~VwDl~s~---~~v~~~~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
+..+|.|+|||+.++ +.+..+.+|..+|.+|+|+|+|. +|||++.+|+ |+|||+... + .
T Consensus 250 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~------~----------~ 312 (430)
T 2xyi_A 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNL------K----------L 312 (430)
T ss_dssp EETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCT------T----------S
T ss_pred EeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCC------C----------C
Confidence 356899999999987 57788899999999999999997 7999999775 999999631 1 2
Q ss_pred EEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEecCCCC
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~-~Las~S~dGTVhIw~l~~~g 464 (838)
.+..+. + +...|.+|+|+|+++ +|++++.||+|+||++...+
T Consensus 313 ~~~~~~-~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 313 KLHSFE-S-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp CSEEEE-C-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CeEEee-c-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 344553 2 345799999999995 69999999999999998754
No 115
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.71 E-value=1.8e-15 Score=167.10 Aligned_cols=225 Identities=16% Similarity=0.151 Sum_probs=154.0
Q ss_pred CCEEEEEECCCCeEEEEEeCC---CcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCcccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~---s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~ 245 (838)
+++|+|||+.+|+.++.++++ ..|.+|+|+++ +|++|. ++.|++||+.+++++.++..|...
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------ 191 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------ 191 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc------------
Confidence 379999999999999888754 47999999985 777766 568999999999998888776553
Q ss_pred ccceeEEcccEEEEeCC--CceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCC
Q 003221 246 GYGPMAVGPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (838)
Q Consensus 246 g~g~~Alspr~LAys~~--~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~ 323 (838)
...++..++.|+.++. ...+|+..... ..+. ++..+...
T Consensus 192 -v~~~s~~~~~l~sgs~d~~i~~~d~~~~~------------------~~~~----------------~~~~h~~~---- 232 (420)
T 4gga_A 192 -VGSLSWNSYILSSGSRSGHIHHHDVRVAE------------------HHVA----------------TLSGHSQE---- 232 (420)
T ss_dssp -EEEEEEETTEEEEEETTSEEEEEETTSSS------------------CEEE----------------EEECCSSC----
T ss_pred -eEEEeeCCCEEEEEeCCCceeEeeecccc------------------eeeE----------------Eecccccc----
Confidence 3456666677776654 23445431100 0000 01110000
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCc----EEEEeccCCCCeEEEEECCC-CCEEEEEe--cCCCEEEE
Q 003221 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPS-GTLLVTAS--VYGNNINI 396 (838)
Q Consensus 324 gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~----~v~~~~aH~spIsaLaFSPd-GtlLATAS--~dGt~IrV 396 (838)
.......+.++.+. .+..||.|+|||..+++ .+..+..|..+|.+++|+|+ +.+|++++ .| ..|+|
T Consensus 233 --~~~~~~~~~g~~l~----s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D-~~I~i 305 (420)
T 4gga_A 233 --VCGLRWAPDGRHLA----SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD-RHIRI 305 (420)
T ss_dssp --EEEEEECTTSSEEE----EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT-CEEEE
T ss_pred --eeeeeecCCCCeee----eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC-CEEEE
Confidence 00001111112121 45679999999998764 35677889999999999996 45777654 44 46999
Q ss_pred EecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEecCCCCCccccccCCC
Q 003221 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 397 wdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S--~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
||+.. | ..+..+.. ...|.++.|+++++.|++++ .|++|+||++........+.+|..
T Consensus 306 wd~~t-------~----------~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~ 365 (420)
T 4gga_A 306 WNVCS-------G----------ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 365 (420)
T ss_dssp EETTT-------T----------EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS
T ss_pred EeCCc-------c----------ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC
Confidence 99964 3 45555543 24689999999999998876 789999999988776677788853
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.71 E-value=1.1e-15 Score=161.32 Aligned_cols=257 Identities=14% Similarity=0.065 Sum_probs=160.3
Q ss_pred CceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCE
Q 003221 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (838)
Q Consensus 95 g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~t 174 (838)
....+++..|.++|.+|++.|+. ....+|++.+. +++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~----------~~g~~l~~~~~---------------------------------dg~ 65 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPT----------LPGNFLIAGSW---------------------------------AND 65 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTT----------SSSEEEEEEET---------------------------------TSE
T ss_pred cceeEeccCCCCceEEEEEcCCC----------CCceEEEEECC---------------------------------CCc
Confidence 34556788899999999999851 00135654221 278
Q ss_pred EEEEECCC-CeEE-EEEe-CCCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 175 VRFYSFQS-HCYE-HVLR-FRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 175 V~IWDl~t-g~~V-~tL~-f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
|+|||+.+ ++.+ ..+. +...|.+++++++ +|+++. ++.|++||+.+++... +..+..+ ..
T Consensus 66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~-------------v~ 131 (368)
T 3mmy_A 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP-------------VK 131 (368)
T ss_dssp EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSC-------------EE
T ss_pred EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCc-------------eE
Confidence 99999997 5554 5554 5679999999875 666655 6689999999988655 3444442 34
Q ss_pred eeEE--cc--cEEEEeC--CCceeecCCCCC-CcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccC
Q 003221 249 PMAV--GP--RWLAYAS--NTLLLSNSGRLS-PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 321 (838)
Q Consensus 249 ~~Al--sp--r~LAys~--~~~~l~~~G~vs-~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~ 321 (838)
.+++ .+ ++|+.++ ..+.+|+..... ...+..+. .
T Consensus 132 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------~----------------------------- 172 (368)
T 3mmy_A 132 TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE----------R----------------------------- 172 (368)
T ss_dssp EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS----------C-----------------------------
T ss_pred EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC----------C-----------------------------
Confidence 5666 44 5566554 346678742110 00000000 0
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEE-Ee-ccCCCCeEEEEECCCCCE----EEEEecCCCEEE
Q 003221 322 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QF-KAHTSPISALCFDPSGTL----LVTASVYGNNIN 395 (838)
Q Consensus 322 p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~-~~-~aH~spIsaLaFSPdGtl----LATAS~dGt~Ir 395 (838)
.....+.. .... .+..++.+.+||+....... .+ ..+...+.++++.+++.. |++++.+|. |+
T Consensus 173 ----~~~~~~~~--~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~ 241 (368)
T 3mmy_A 173 ----CYCADVIY--PMAV----VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VA 241 (368)
T ss_dssp ----EEEEEEET--TEEE----EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EE
T ss_pred ----ceEEEecC--CeeE----EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EE
Confidence 00000000 0000 23467899999998765432 22 235566777777766655 999999765 99
Q ss_pred EEecCCCcccCCCCCCccccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 396 Vwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~-----------a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
|||+.... ....++.+. ++.. ..|.+++|+||+++|++++.||+|+||++....
T Consensus 242 i~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 242 IHYINPPN--------------PAKDNFTFK-CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp EEESSCSC--------------HHHHSEEEE-CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred EEecCCCC--------------ccccceeee-eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 99996420 001223332 2221 159999999999999999999999999998765
Q ss_pred CccccccCC
Q 003221 465 GDSGFQTLS 473 (838)
Q Consensus 465 g~~~~~~H~ 473 (838)
....+..|.
T Consensus 307 ~~~~~~~~~ 315 (368)
T 3mmy_A 307 KLKTSEQLD 315 (368)
T ss_dssp EEEECCCCS
T ss_pred EEEEecCCC
Confidence 555555554
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.8e-16 Score=170.85 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=83.9
Q ss_pred CCCceEEEEECCCCcEEE----EeccCCCCeEEEEECCC---CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCc
Q 003221 346 DNAGIVVVKDFVTRAIIS----QFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~----~~~aH~spIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~ 418 (838)
..+|.|.+||+.+++... .+.+|..+|.+|+|+|+ |++|++++.||+ |+|||+.. +
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~-------~--------- 230 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQ-------C--------- 230 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESC-------T---------
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCC-------C---------
Confidence 457899999998876544 88899999999999999 999999999776 99999953 2
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCc
Q 003221 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~ 466 (838)
..+..+..|+ ...|.+++|+ |+++|++++.|++|+||++......
T Consensus 231 -~~~~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 231 -FIVDKWLFGH-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp -TCEEEECCCC-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE
T ss_pred -ceeeeeecCC-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe
Confidence 3455554554 4579999999 9999999999999999999865433
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.69 E-value=4.3e-15 Score=154.43 Aligned_cols=224 Identities=14% Similarity=0.131 Sum_probs=145.8
Q ss_pred CEEEEEECCCCeEEEEEeCC---CcEEEEEeCCC--eEEEEe-CCeEEEEECCCCceeeEEeecCCcccCCCCccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~---s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
++|+|||+.++++++.++++ ..|.+|+++++ +|++|. ++.|++||+.+++++.++..|...
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------- 111 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------- 111 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-------------
Confidence 78999999999999998754 47999999885 677655 568999999999999888776553
Q ss_pred cceeEEcccEEEEeCCC--ceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCC
Q 003221 247 YGPMAVGPRWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (838)
Q Consensus 247 ~g~~Alspr~LAys~~~--~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~g 324 (838)
...++..++.|+..... ..+|..... ...+ +++.++..
T Consensus 112 ~~~~~~~~~~l~s~~~~~~~~~~~~~~~------------------~~~~----------------~~~~~~~~------ 151 (318)
T 4ggc_A 112 VGSLSWNSYILSSGSRSGHIHHHDVRVA------------------EHHV----------------ATLSGHSQ------ 151 (318)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSS------------------SCEE----------------EEEECCSS------
T ss_pred EEEeecCCCEEEEEecCCceEeeecCCC------------------ceeE----------------EEEcCccC------
Confidence 22344455666655432 222321100 0000 00000000
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCE-E--EEEecCCCEEEEE
Q 003221 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTL-L--VTASVYGNNINIF 397 (838)
Q Consensus 325 s~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~----~v~~~~aH~spIsaLaFSPdGtl-L--ATAS~dGt~IrVw 397 (838)
...........+.+. ++..+|.|+|||+.+++ .......|..+|.+++++|++.. + ++++.+ ..|+||
T Consensus 152 ~~~~~~~~~~~~~l~----s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~i~lw 226 (318)
T 4ggc_A 152 EVCGLRWAPDGRHLA----SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD-RHIRIW 226 (318)
T ss_dssp CEEEEEECTTSSEEE----EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT-CEEEEE
T ss_pred ceEEEEEcCCCCEEE----EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC-CEEEEE
Confidence 000001111111111 45679999999998765 34566788999999999997653 3 344454 469999
Q ss_pred ecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEecCCCCCccccccCCC
Q 003221 398 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLSS 474 (838)
Q Consensus 398 di~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S--~dGTVhIw~l~~~gg~~~~~~H~~ 474 (838)
|... + ....... +...|..++|+|+++.+++++ .|++|+||++........+++|..
T Consensus 227 d~~~-------~----------~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~ 285 (318)
T 4ggc_A 227 NVCS-------G----------ACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 285 (318)
T ss_dssp ETTT-------C----------CEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS
T ss_pred eccc-------c----------ccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC
Confidence 9854 1 2222222 234699999999999988765 799999999988776677788853
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2e-15 Score=180.87 Aligned_cols=211 Identities=14% Similarity=0.179 Sum_probs=144.0
Q ss_pred eEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEE
Q 003221 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (838)
Q Consensus 98 ~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~I 177 (838)
..++.+|.++|.++++.|++ .+|++.+. +++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg-------------~~latg~~---------------------------------dg~I~v 35 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYG-------------KRLATCSS---------------------------------DKTIKI 35 (753)
T ss_dssp ------CCCCEEEECCCSSS-------------CCEEEEET---------------------------------TTEEEE
T ss_pred eeecccCcceeEEEEECCCC-------------CeEEEEEC---------------------------------CCcEEE
Confidence 35678899999999998752 35554321 278999
Q ss_pred EECC--CCeEEEEEe-CCCcEEEEEeCC----CeEEEEe-CCeEEEEECCCCc--eeeEEeecCCcccCCCCcccccccc
Q 003221 178 YSFQ--SHCYEHVLR-FRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGY 247 (838)
Q Consensus 178 WDl~--tg~~V~tL~-f~s~V~sV~~s~----~iLaV~l-~~~I~IwD~~t~e--~l~tL~t~p~p~~~~~~~~~~~~g~ 247 (838)
||+. +++.+.++. +...|.++++++ ++|+++. ++.|++||+.+++ ....+..+..+ .
T Consensus 36 wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-------------V 102 (753)
T 3jro_A 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-------------V 102 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------E
T ss_pred EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-------------e
Confidence 9998 556677775 457999999974 4666655 6689999999876 33333333221 1
Q ss_pred ceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCC
Q 003221 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (838)
Q Consensus 248 g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s 327 (838)
..+++.++. .+..+
T Consensus 103 -------~~v~~sp~~--------------------------~~~~l--------------------------------- 116 (753)
T 3jro_A 103 -------NSVQWAPHE--------------------------YGPLL--------------------------------- 116 (753)
T ss_dssp -------EEEEECCGG--------------------------GCSEE---------------------------------
T ss_pred -------EEEEECCCC--------------------------CCCEE---------------------------------
Confidence 122332210 00000
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEecCCC
Q 003221 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVYGN 392 (838)
Q Consensus 328 ~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~--~v~~~~aH~spIsaLaFSP-------------dGtlLATAS~dGt 392 (838)
..+..+|.|+|||+.++. ....+.+|..+|.+++|+| +|.+|++++.||+
T Consensus 117 ---------------~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 117 ---------------LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp ---------------EEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred ---------------EEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 024568999999998873 4557789999999999999 5999999999887
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCeEEEEecCCCC
Q 003221 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 393 ~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD---g~~Las~S~dGTVhIw~l~~~g 464 (838)
|+|||+... . .....+..+ .+ +...|.+++|+|| +++|++++.||+|+||++....
T Consensus 182 -I~iwd~~~~-------~------~~~~~~~~~-~~-h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 182 -VKIWKYNSD-------A------QTYVLESTL-EG-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -EEEEEEETT-------T------TEEEEEEEE-CC-CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred -EEEEeccCC-------c------ccceeeeee-cC-CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 999999541 0 111233344 34 3457999999999 9999999999999999998754
No 120
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.68 E-value=1.4e-14 Score=161.34 Aligned_cols=238 Identities=15% Similarity=0.077 Sum_probs=159.5
Q ss_pred CeEEEEEec------CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCC
Q 003221 75 KQVLLLGYQ------NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (838)
Q Consensus 75 ~~vL~lG~~------~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~ 148 (838)
.+++.++.+ ..+++||++ .+ ....+..|.+.|..++|.|+. ..||.++.++
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~-g~-~~~~l~~~~~~v~~~~~Spdg-------------~~la~~s~~~-------- 200 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYD-GY-NQFVVHRSPQPLMSPAWSPDG-------------SKLAYVTFES-------- 200 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETT-SC-SCEEEEEESSCEEEEEECTTS-------------SEEEEEECTT--------
T ss_pred CEEEEEEecCCCCccceEEEEcCC-CC-CCEEEeCCCCcceeeEEcCCC-------------CEEEEEEecC--------
Confidence 455555554 459999995 34 345666788899999999863 2566654321
Q ss_pred CCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEE-e---CCeEEEEECCCCc
Q 003221 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVG-L---ATQIYCFDALTLE 222 (838)
Q Consensus 149 ~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~-l---~~~I~IwD~~t~e 222 (838)
...+|++||+++++......+...+.+++|+++ .|++. . ...|++||+.+++
T Consensus 201 ----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 201 ----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp ----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred ----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 025899999999998766667789999999986 56643 3 2359999999876
Q ss_pred eeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehh
Q 003221 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (838)
Q Consensus 223 ~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~d 300 (838)
. ..+..+... ...++++| ++|+|...
T Consensus 259 ~-~~l~~~~~~-------------~~~~~~spdg~~l~~~s~-------------------------------------- 286 (415)
T 2hqs_A 259 I-RQVTDGRSN-------------NTEPTWFPDSQNLAFTSD-------------------------------------- 286 (415)
T ss_dssp E-EECCCCSSC-------------EEEEEECTTSSEEEEEEC--------------------------------------
T ss_pred E-EeCcCCCCc-------------ccceEECCCCCEEEEEEC--------------------------------------
Confidence 4 333332221 12233332 22222210
Q ss_pred hhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 003221 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS 380 (838)
Q Consensus 301 s~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPd 380 (838)
.+....|.+||+.+++ +..+..|...+.+++|+||
T Consensus 287 --------------------------------------------~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 287 --------------------------------------------QAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSD 321 (415)
T ss_dssp --------------------------------------------TTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTT
T ss_pred --------------------------------------------CCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCC
Confidence 0012268888998876 3556678889999999999
Q ss_pred CCEEEEEecCC--CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC---eE
Q 003221 381 GTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TC 455 (838)
Q Consensus 381 GtlLATAS~dG--t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dG---TV 455 (838)
|++||+++.++ ..|.+||+.. | .+..+..+ ..+.+++|+|||++|+.++.++ ++
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~-------~-----------~~~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLAT-------G-----------GVQVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTT-------C-----------CEEECCCS---SSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred CCEEEEEECcCCceEEEEEECCC-------C-----------CEEEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 99999988752 4699999853 2 22344332 2689999999999999998887 78
Q ss_pred EEEecCCCCCccccccCCCCC
Q 003221 456 HVFVLSPFGGDSGFQTLSSQG 476 (838)
Q Consensus 456 hIw~l~~~gg~~~~~~H~~~~ 476 (838)
++|++. .+....+..|...+
T Consensus 381 ~~~d~~-g~~~~~l~~~~~~v 400 (415)
T 2hqs_A 381 NLVSTD-GRFKARLPATDGQV 400 (415)
T ss_dssp EEEETT-SCCEEECCCSSSEE
T ss_pred EEEECC-CCcEEEeeCCCCCC
Confidence 899886 33344555664433
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.68 E-value=1.8e-15 Score=166.71 Aligned_cols=144 Identities=11% Similarity=0.096 Sum_probs=85.0
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCc-------eeEEee-eccCcEEEEEEecCCCCCCC
Q 003221 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASN-------FNELVS-KRDGPVSFLQMQPFPVKDDG 122 (838)
Q Consensus 51 ~~~~~~d~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~g~-------v~ells-~hdg~V~~l~~lP~p~~~~~ 122 (838)
+.+...-.+.|+.+. ....++|+.|.++++.+|+...... ...+.. .+..++..+.+.+.......
T Consensus 13 pl~~~p~~~~w~~~~------~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (393)
T 4gq1_A 13 PLNVRPYTTTWCSQS------PSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSEN 86 (393)
T ss_dssp CTTCCEEEEEECTTS------GGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC
T ss_pred cCCCCCeEEEEeCCC------CCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcccccc
Confidence 455566666765322 2235689999999999998753221 111111 23356666766543211100
Q ss_pred C-------CCcccCCcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEE------
Q 003221 123 C-------EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL------ 189 (838)
Q Consensus 123 ~-------d~F~~srpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL------ 189 (838)
. ..+.....+|| .|+. +++|+|||+++++.....
T Consensus 87 ~~~~~~~~~~~~~~~~~la-----------------------s~~~----------d~~v~lw~~~~~~~~~~~~~~~~~ 133 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLA-----------------------CVCQ----------DNTVRLIITKNETIITQHVLGGKS 133 (393)
T ss_dssp ----------CCEEEEEEE-----------------------EEET----------TSCEEEEEEETTEEEEEEEECTTT
T ss_pred ccCCCcceeecCCCCCEEE-----------------------EEeC----------CCcEEEEECCCCccceeeeecccC
Confidence 0 01111111222 2222 378999999999765432
Q ss_pred eCCCcEEEEEeCC----------CeEEEEe-CCeEEEEECCCCceeeEEeecCCc
Q 003221 190 RFRSSVCMVRCSP----------RIVAVGL-ATQIYCFDALTLENKFSVLTYPVP 233 (838)
Q Consensus 190 ~f~s~V~sV~~s~----------~iLaV~l-~~~I~IwD~~t~e~l~tL~t~p~p 233 (838)
.+...|.+|+|++ ++||.+. |.+|+|||+.+.++...+..+..+
T Consensus 134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 1456999999975 3677655 668999999988877777766553
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.68 E-value=1.4e-14 Score=158.61 Aligned_cols=232 Identities=12% Similarity=0.132 Sum_probs=155.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEE-----eeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCC
Q 003221 74 FKQVLLLGYQNG-FQVLDVEDASNFNEL-----VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (838)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~g~v~el-----ls~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~ 147 (838)
.+++++++..++ +++||++. +++... +..|.+.|..+++.|+. .+++. +.
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~s-~~--------- 188 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEHN-------------ELWVS-QM--------- 188 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGGT-------------EEEEE-EG---------
T ss_pred CCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCCC-------------EEEEE-EC---------
Confidence 467788777665 99999964 555552 33577889999987642 24433 21
Q ss_pred CCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEeCCC--eE-EEE-eCCeEEEEECCCCc
Q 003221 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IV-AVG-LATQIYCFDALTLE 222 (838)
Q Consensus 148 ~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f-~s~V~sV~~s~~--iL-aV~-l~~~I~IwD~~t~e 222 (838)
.+++|++||+++++.+..+.. ...+.+++++++ .| +++ .++.|++||+.+++
T Consensus 189 -----------------------~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 189 -----------------------QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp -----------------------GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred -----------------------CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 127899999999999998874 458999999875 45 445 36789999999987
Q ss_pred eeeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhh
Q 003221 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (838)
Q Consensus 223 ~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~ 302 (838)
.+..+..... . ..+++.++...++. +.
T Consensus 246 ~~~~~~~~~~--------------~-------~~~~~~~~g~~l~~--------------------------~~------ 272 (433)
T 3bws_A 246 EIRKTDKIGL--------------P-------RGLLLSKDGKELYI--------------------------AQ------ 272 (433)
T ss_dssp EEEECCCCSE--------------E-------EEEEECTTSSEEEE--------------------------EE------
T ss_pred EEEEecCCCC--------------c-------eEEEEcCCCCEEEE--------------------------EE------
Confidence 6554432111 1 22333322111000 00
Q ss_pred hhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC
Q 003221 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT 382 (838)
Q Consensus 303 k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGt 382 (838)
+-. + . ....+|.|++||+.+++.+..+ .|...+.+++|+|+|+
T Consensus 273 -------------~~~-----~--------------~----~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 273 -------------FSA-----S--------------N----QESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTEN 315 (433)
T ss_dssp -------------EES-----C--------------T----TCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTT
T ss_pred -------------CCC-----C--------------c----cccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCC
Confidence 000 0 0 0024789999999998876665 5666899999999997
Q ss_pred EE-EEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC----------
Q 003221 383 LL-VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS---------- 451 (838)
Q Consensus 383 lL-ATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~---------- 451 (838)
.| ++++.+ ..|++||+.. + ..+..+.. ...+.+++|+||+++|++++.
T Consensus 316 ~l~~~~~~~-~~v~v~d~~~-------~----------~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 316 KIYVSDMCC-SKIEVYDLKE-------K----------KVQKSIPV---FDKPNTIALSPDGKYLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp EEEEEETTT-TEEEEEETTT-------T----------EEEEEEEC---SSSEEEEEECTTSSEEEEEECCCCCTTTCTT
T ss_pred EEEEEecCC-CEEEEEECCC-------C----------cEEEEecC---CCCCCeEEEcCCCCEEEEEecCCCccccccc
Confidence 55 555664 4699999853 2 34445432 346899999999999999887
Q ss_pred -----CCeEEEEecCCC
Q 003221 452 -----KGTCHVFVLSPF 463 (838)
Q Consensus 452 -----dGTVhIw~l~~~ 463 (838)
||+|++|++...
T Consensus 375 ~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp SCCSSCCEEEEEETTTT
T ss_pred cccccceEEEEEECCCC
Confidence 579999998764
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.68 E-value=2e-15 Score=166.15 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=46.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCe-EEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPI-SALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spI-saLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
+..||+|+|||+.+++.+.+|.+|...+ .+++|+|||++|||||.|++ |||||+
T Consensus 301 gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 301 ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 4568999999999999999999998765 46999999999999999776 999996
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.4e-15 Score=161.32 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=113.9
Q ss_pred CEEEEEECCCCeEEEEEeC--CCcEEEEEeCCC--eEEEEe-CCeEEEEECCCCcee-eEEee-cCCcccCCCCcccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENK-FSVLT-YPVPQLAGQGAVGINV 245 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f--~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~l-~tL~t-~p~p~~~~~~~~~~~~ 245 (838)
++|++||+++++.+..+.. ...|.+++++++ +|++|. ++.|++||+++++.+ .++.. |..+
T Consensus 149 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~------------ 216 (343)
T 3lrv_A 149 GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK------------ 216 (343)
T ss_dssp CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC------------
T ss_pred CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC------------
Confidence 6899999999999777643 347999999886 777755 668999999999876 55544 3332
Q ss_pred ccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCC
Q 003221 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (838)
Q Consensus 246 g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs 325 (838)
. ..|+|.++. .+++
T Consensus 217 -v-------~~l~fs~~g----------------------------~~l~------------------------------ 230 (343)
T 3lrv_A 217 -I-------KEVKFADNG----------------------------YWMV------------------------------ 230 (343)
T ss_dssp -E-------EEEEECTTS----------------------------SEEE------------------------------
T ss_pred -E-------EEEEEeCCC----------------------------CEEE------------------------------
Confidence 1 223343321 0000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc---CCCCeE--EEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPIS--ALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 326 ~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a---H~spIs--aLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
.+. ++.|+|||+.+.+.+..+.. |..++. +++|+|+|++||+++..+..|+||++.
T Consensus 231 ------------------s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 231 ------------------VEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp ------------------EEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ------------------EEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 112 44899999998876555554 556665 699999999999999844469999985
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---CCCEEEEEeCCCeEEEEec
Q 003221 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH---YSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 401 p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp---Dg~~Las~S~dGTVhIw~l 460 (838)
.. . ...+. ..+..++|++ +.+.|++++.||++.++--
T Consensus 292 ~~------~-----------~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 292 KK------T-----------KNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp TT------T-----------CSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred cc------c-----------cceEe------cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 31 1 11222 2477889999 9999999999999998764
No 125
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.66 E-value=1.1e-13 Score=144.67 Aligned_cols=284 Identities=10% Similarity=0.051 Sum_probs=167.9
Q ss_pred EEEEEe-cCcEEEEEccCCCceeEEeeeccC--cEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 77 VLLLGY-QNGFQVLDVEDASNFNELVSKRDG--PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 77 vL~lG~-~~G~qVWdv~~~g~v~ells~hdg--~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+|+++. ++.+++||+. .+++...+..... .+..+++.|+. ..|++...
T Consensus 3 ~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~dg-------------~~l~v~~~--------------- 53 (337)
T 1pby_B 3 YILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPGG-------------RIAYATVN--------------- 53 (337)
T ss_dssp EEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTTS-------------SEEEEEET---------------
T ss_pred EEEEcCCCCeEEEEECC-CCcEEEEEEcCCCCCCccceEEcCCC-------------CEEEEEeC---------------
Confidence 455554 5569999995 4555554443221 46778888752 24444321
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEeCCC--eEEEEe-------------CCe
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSPR--IVAVGL-------------ATQ 212 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s------~V~sV~~s~~--iLaV~l-------------~~~ 212 (838)
..+.|.+||+.+++.+..+.+.. .+..++++++ .|+++. +++
T Consensus 54 -----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T 1pby_B 54 -----------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp -----------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred -----------------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence 12689999999999999888754 6778888864 677763 578
Q ss_pred EEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCCCceeecCCCCCC-cccCCCC--CCCCCC
Q 003221 213 IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSP-QNLTPSG--VSPSTS 287 (838)
Q Consensus 213 I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~~~l~~~G~vs~-q~l~~~~--~s~sts 287 (838)
|++||+.+++....+..... ...+++++ ++|++++..+.+|+...-.. ..+.... .+...+
T Consensus 117 i~v~d~~~~~~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s 182 (337)
T 1pby_B 117 VALYDAETLSRRKAFEAPRQ--------------ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182 (337)
T ss_dssp EEEEETTTTEEEEEEECCSS--------------CCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCC
T ss_pred EEEEECCCCcEEEEEeCCCC--------------cceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCCceeC
Confidence 99999999887766553211 23466766 67777766677776411100 0000000 001111
Q ss_pred CCCCcceeeeehhhhhhhhcccccccc-ccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE-EEe
Q 003221 288 PGGSSLVARYAMEHSKQFAAGLSKTLS-KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-SQF 365 (838)
Q Consensus 288 ps~gslva~~A~ds~k~la~Gl~ktls-~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v-~~~ 365 (838)
|.+..+.+.. +.. +.+. .|.......+ . .. .......|.+||+.+++.. ..+
T Consensus 183 ~dg~~l~~~~--~~~--------~~~~~~~~~~~~~~~-----------~--~~---~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 183 PDVLAVWNQH--ESS--------GVMATPFYTARKDID-----------P--AD---PTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp CBCCCCCCCC--TTT--------TEEEEEEEEEBTTSC-----------T--TS---GGGEEEEEEEEETTTCCEEEEEE
T ss_pred CCccEEeeec--cCC--------Cceeeeeeccccccc-----------c--cc---ccccccceEEEeCCCCCceEeec
Confidence 1111100000 000 0000 0000000000 0 00 0011226899999998764 345
Q ss_pred ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003221 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (838)
Q Consensus 366 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (838)
..|...+..++|+|||++|++++ + .|.+||+.. + +.+..+..+ ..+.+++|+|||++
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~~--~-~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGAY--N-VLESFDLEK-------N----------ASIKRVPLP---HSYYSVNVSTDGST 293 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEEE--S-EEEEEETTT-------T----------EEEEEEECS---SCCCEEEECTTSCE
T ss_pred CCCCCceeeEEECCCCCEEEEeC--C-eEEEEECCC-------C----------cCcceecCC---CceeeEEECCCCCE
Confidence 56777889999999999999883 4 599999853 2 344444433 34789999999999
Q ss_pred EEEEeCCCeEEEEecCCCCCcccc
Q 003221 446 IAIVSSKGTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 446 Las~S~dGTVhIw~l~~~gg~~~~ 469 (838)
|++++.+++|+||++........+
T Consensus 294 l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 294 VWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCcEEEEECcCCcEEEEE
Confidence 999999999999999876543333
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.62 E-value=1e-13 Score=149.64 Aligned_cols=212 Identities=14% Similarity=0.082 Sum_probs=144.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eE-EEE-eCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IV-AVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iL-aV~-l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
++|++||+++++.+..+..+..+.+++++++ .| +++ .++.|++||+.+++.+..+..+.. ..
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--------------v~ 77 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS--------------PQ 77 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--------------EE
T ss_pred CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC--------------cc
Confidence 7899999999999999999889999999875 45 444 467899999999998777654321 34
Q ss_pred eeEEcc--cEEEEeC---CCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCC
Q 003221 249 PMAVGP--RWLAYAS---NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (838)
Q Consensus 249 ~~Alsp--r~LAys~---~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~ 323 (838)
.+++++ ++|+++. ..+.+|+... +..+..+ .. .
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~-------------------~~~~~~~----------------~~-------~ 115 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTS-------------------NTVAGTV----------------KT-------G 115 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTT-------------------TEEEEEE----------------EC-------S
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCC-------------------CeEEEEE----------------eC-------C
Confidence 567776 5665543 2455666311 0111000 00 0
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCc
Q 003221 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (838)
Q Consensus 324 gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~ 403 (838)
.....+.+++.++.+.+ .+..++.|.+||+.+++.+..+..|. .+.+++|+|+|++|+.++.++..|++||+..
T Consensus 116 ~~~~~~~~s~dg~~l~~---~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-- 189 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYV---TNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVT-- 189 (391)
T ss_dssp SSEEEEEECTTSSEEEE---EETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT--
T ss_pred CCcceEEECCCCCEEEE---EeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCC--
Confidence 00011111222222211 24568999999999999988888775 4599999999998854444355699999854
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe---CCCeEEEEecCCCC
Q 003221 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPFG 464 (838)
Q Consensus 404 ~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S---~dGTVhIw~l~~~g 464 (838)
+ ..+..+.. ...+.+++|+||+++|++++ .+++|++|++....
T Consensus 190 -----~----------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 190 -----N----------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp -----T----------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred -----C----------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 2 34444432 23689999999999999998 68999999997643
No 127
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.61 E-value=1.9e-13 Score=144.08 Aligned_cols=271 Identities=8% Similarity=0.015 Sum_probs=165.4
Q ss_pred CeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+.+++++..+ .+.+||++ .+++...+..+..++ .+++.|+. ..|+++..+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~-~~~~s~dg-------------~~l~~~~~~-------------- 60 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTD-TLEILNQITLGYDFV-DTAITSDC-------------SNVVVTSDF-------------- 60 (331)
T ss_dssp CEEEEEEGGGTEEEEEETT-TCCEEEEEECCCCEE-EEEECSSS-------------CEEEEEEST--------------
T ss_pred CEEEEEecCCCeEEEEeCc-ccceeeeEEccCCcc-eEEEcCCC-------------CEEEEEeCC--------------
Confidence 5667776665 49999995 466766666555566 88888753 244443321
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCCCcEEE-EEeCCC--eEEEEeCC----eEEEEECCCCceee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFRSSVCM-VRCSPR--IVAVGLAT----QIYCFDALTLENKF 225 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~-V~tL~f~s~V~s-V~~s~~--iLaV~l~~----~I~IwD~~t~e~l~ 225 (838)
.++|.+||+.+++. ...+........ ++++++ +|+++... .|++||+.+++.+.
T Consensus 61 ------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~ 122 (331)
T 3u4y_A 61 ------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS 122 (331)
T ss_dssp ------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE
T ss_pred ------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE
Confidence 26899999999987 777766655555 888875 67666655 89999999998777
Q ss_pred EEeecCCcccCCCCccccccccceeEEcc--cEEEEeC---CC-ceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeeh
Q 003221 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS---NT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (838)
Q Consensus 226 tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~---~~-~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ 299 (838)
.+..... ...++++| ++|..+. .. +.+|+... .+.+... .
T Consensus 123 ~~~~~~~--------------~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~------------------~g~~~~~-~- 168 (331)
T 3u4y_A 123 TIPIPYD--------------AVGIAISPNGNGLILIDRSSANTVRRFKIDA------------------DGVLFDT-G- 168 (331)
T ss_dssp EEECCTT--------------EEEEEECTTSSCEEEEEETTTTEEEEEEECT------------------TCCEEEE-E-
T ss_pred EEECCCC--------------ccceEECCCCCEEEEEecCCCceEEEEEECC------------------CCcEeec-C-
Confidence 6543222 23466766 4444332 23 44554210 0000000 0
Q ss_pred hhhhhhhccccccccccccccCCCC-CCCCccCCCccccccccccccCCCceEEEEECCCCcE---EEEeccCCCCeEEE
Q 003221 300 EHSKQFAAGLSKTLSKYCQELLPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---ISQFKAHTSPISAL 375 (838)
Q Consensus 300 ds~k~la~Gl~ktls~y~~~~~p~g-s~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~---v~~~~aH~spIsaL 375 (838)
....+.+ ....+.++++++.+.+ ....++.|.+||+.+++. +..+..+ ..+..+
T Consensus 169 ------------------~~~~~~~~~~~~~~~spdg~~l~v---~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~ 226 (331)
T 3u4y_A 169 ------------------QEFISGGTRPFNITFTPDGNFAFV---ANLIGNSIGILETQNPENITLLNAVGTN-NLPGTI 226 (331)
T ss_dssp ------------------EEEECSSSSEEEEEECTTSSEEEE---EETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCE
T ss_pred ------------------CccccCCCCccceEECCCCCEEEE---EeCCCCeEEEEECCCCcccceeeeccCC-CCCceE
Confidence 0000000 0011122222332211 234578999999999887 7777755 566889
Q ss_pred EECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc--cccc---cEEEEEEccCCCEEEEEe
Q 003221 376 CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG--ITSA---TIQDICFSHYSQWIAIVS 450 (838)
Q Consensus 376 aFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG--~t~a---~I~sIaFSpDg~~Las~S 450 (838)
+|+|||++|+.++..+..|.+||+.. |. ...+..+..+ .... ...+++|+|||++|++++
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLS-------GT--------LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTT-------TE--------EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCC-------Cc--------eeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 99999998877776556699999854 21 1123333333 1111 235689999999987665
Q ss_pred C-CCeEEEEecCCC
Q 003221 451 S-KGTCHVFVLSPF 463 (838)
Q Consensus 451 ~-dGTVhIw~l~~~ 463 (838)
. +++|.||++...
T Consensus 292 ~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 292 NISRELKVFTISGK 305 (331)
T ss_dssp TTTTEEEEEETTSC
T ss_pred CCCCcEEEEEecCC
Confidence 5 569999999753
No 128
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.3e-14 Score=166.73 Aligned_cols=238 Identities=10% Similarity=0.040 Sum_probs=156.2
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCC----C---Cc--ccCCcEEEEEECCCCCc
Q 003221 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGC----E---GF--RKLHPFLLVVAGEDTNT 143 (838)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~----d---~F--~~srpLLavV~~d~t~~ 143 (838)
+++.+++++.++ ++ |... .+.+.+|.+.|..|+++|++....-. + .+ ....+..++ .
T Consensus 26 DG~~iASas~D~TV~--d~~~----~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v-a------ 92 (588)
T 2j04_A 26 DGTLYLTTFPDISIG--QPKY----AKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC-K------ 92 (588)
T ss_dssp TSCEEEECSSSEEEE--EECC----CSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE-E------
T ss_pred CCCEEEEEcCCceee--cccc----cceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE-E------
Confidence 478899988886 67 6432 23446889999999999987321100 0 11 111112221 1
Q ss_pred CCCCCCCCCCCC-cccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEeCCC--eEEEEe-CCeE
Q 003221 144 LAPGQNRSHLGG-VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSPR--IVAVGL-ATQI 213 (838)
Q Consensus 144 ~~~~~~~~~~~~-~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s------~V~sV~~s~~--iLaV~l-~~~I 213 (838)
++..|. ++.++. .++|++||.++ ++..++ +. .|.+++|+|+ +||++. +++|
T Consensus 93 ------wSPdG~~LAs~s~----------dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 93 ------PSPIDDWMAVLSN----------NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp ------ECSSSSCEEEEET----------TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred ------ECCCCCEEEEEeC----------CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 111222 233333 48899999644 667777 44 4999999986 677665 6789
Q ss_pred EEEECCCCce-------eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCC
Q 003221 214 YCFDALTLEN-------KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (838)
Q Consensus 214 ~IwD~~t~e~-------l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~st 286 (838)
+|||+.+++. +.++..+... . .+.+ ..+||+++.
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~g------h------~~~V----~sVawSPdg----------------------- 194 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAG------S------KDWV----THIVWYEDV----------------------- 194 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTT------C------CCCE----EEEEEETTE-----------------------
T ss_pred EEEECCCCccccccceeeeeeeccccc------c------cccE----EEEEEcCCc-----------------------
Confidence 9999998752 3454332210 0 0000 223443321
Q ss_pred CCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE---EE
Q 003221 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---IS 363 (838)
Q Consensus 287 sps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~---v~ 363 (838)
++ .+..|++|++||+.+++. ..
T Consensus 195 ------La-------------------------------------------------ass~D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 195 ------LV-------------------------------------------------AALSNNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp ------EE-------------------------------------------------EEETTCCEEEECCCSSSSCCCEE
T ss_pred ------EE-------------------------------------------------EEeCCCeEEEEECCCCcccccee
Confidence 11 123478999999988773 45
Q ss_pred Ee-ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE--c
Q 003221 364 QF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--S 440 (838)
Q Consensus 364 ~~-~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF--S 440 (838)
++ .+|...|.+++|+ |+.||+++. | .|++||+.. + ++..+..| +.+.|++|+| |
T Consensus 220 tL~~~h~~~V~svaFs--g~~LASa~~-~-tIkLWd~~~-------~-----------~~~~~~~g-h~~~V~~va~~~s 276 (588)
T 2j04_A 220 MIQNASRRKITDLKIV--DYKVVLTCP-G-YVHKIDLKN-------Y-----------SISSLKTG-SLENFHIIPLNHE 276 (588)
T ss_dssp EEECCCSSCCCCEEEE--TTEEEEECS-S-EEEEEETTT-------T-----------EEEEEECS-CCSCCCEEEETTC
T ss_pred eecccccCcEEEEEEE--CCEEEEEeC-C-eEEEEECCC-------C-----------eEEEEEcC-CCceEEEEEeeeC
Confidence 67 4899999999999 799999984 5 599999853 2 44344446 5678999999 9
Q ss_pred cCCCEEEEEeCCCeEEEEecC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~ 461 (838)
||++.|++++.+|+ +||.++
T Consensus 277 ~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 277 KESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SSCEEEEECSSCEE-EEEESS
T ss_pred CCCCEEEEEcCCCC-EEEeec
Confidence 99999999999999 999987
No 129
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.5e-14 Score=163.02 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=143.9
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCc-----EEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGP-----VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~-----V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~ 148 (838)
++.|+++..+| ++|||.+. +...+. |+.+ |.+++|.|++ .+||+.+.
T Consensus 97 G~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG-------------~~LAsgs~---------- 149 (588)
T 2j04_A 97 DDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIE-------------SSIVVGNE---------- 149 (588)
T ss_dssp SSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSS-------------SCEEEEET----------
T ss_pred CCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCC-------------CEEEEEcC----------
Confidence 55666666665 99999743 566667 7764 9999999864 25666332
Q ss_pred CCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCe-------EEEEEeC-----CCcEEEEEeCCC-eEEEEeCCeEEE
Q 003221 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-------YEHVLRF-----RSSVCMVRCSPR-IVAVGLATQIYC 215 (838)
Q Consensus 149 ~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~-------~V~tL~f-----~s~V~sV~~s~~-iLaV~l~~~I~I 215 (838)
+++|+|||++++. .+.+++. .+.|++|+++++ +++++.++.|++
T Consensus 150 -----------------------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrl 206 (588)
T 2j04_A 150 -----------------------DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFS 206 (588)
T ss_dssp -----------------------TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEE
T ss_pred -----------------------CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEE
Confidence 3789999999985 3677643 359999999987 455566778999
Q ss_pred EECCCCcee---eEEee-cCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCC
Q 003221 216 FDALTLENK---FSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGS 291 (838)
Q Consensus 216 wD~~t~e~l---~tL~t-~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~g 291 (838)
||+.+.+.. +++.. |... ...+ ||.+ ..
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~-------------V~sv-------aFsg-~~--------------------------- 238 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRK-------------ITDL-------KIVD-YK--------------------------- 238 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSC-------------CCCE-------EEET-TE---------------------------
T ss_pred EECCCCccccceeeecccccCc-------------EEEE-------EEEC-CE---------------------------
Confidence 999887632 34432 2110 1112 2221 00
Q ss_pred cceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCC
Q 003221 292 SLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP 371 (838)
Q Consensus 292 slva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~sp 371 (838)
++ .+. +|+|++||+.+++......+|...
T Consensus 239 ----------------------------------------------LA----Sa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 239 ----------------------------------------------VV----LTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp ----------------------------------------------EE----EEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred ----------------------------------------------EE----EEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 00 011 489999999988764444489999
Q ss_pred eEEEEE--CCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCc-------cccCCcceEEEEEecccccccEEEEEEccC
Q 003221 372 ISALCF--DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK-------YDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (838)
Q Consensus 372 IsaLaF--SPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~-------~~~~~~~~~l~~L~RG~t~a~I~sIaFSpD 442 (838)
|..++| +|||+.|++|+++|+ |||.... ...+..+... .-|......+..+ .+ +..|++|+||||
T Consensus 268 V~~va~~~s~d~~~La~a~edG~--klw~~d~-~~~spd~~l~a~~d~~v~lW~~~g~~l~~~-~~--~~~I~~va~SPd 341 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSY--KVLLEDE-LHVTADNIIAPYLEKKFKKWSTIWNEFNNY-ET--TLVIHGISLSPD 341 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEE--EEEESSS-EEEECCCSSHHHHHHHHHHTTTTTTSSSSS-CC--EEEEEEEEECTT
T ss_pred EEEEEeeeCCCCCEEEEEcCCCC--EEEeecc-EEECCCceEEEEcCCEEEEEECCCCceeee-cc--ceEEEEEEECCC
Confidence 999999 999999999999876 9998731 1000011100 0011111122222 22 346999999999
Q ss_pred CCEEEEEeC
Q 003221 443 SQWIAIVSS 451 (838)
Q Consensus 443 g~~Las~S~ 451 (838)
|+.||+++.
T Consensus 342 G~~lA~~~~ 350 (588)
T 2j04_A 342 GYSIAIVYD 350 (588)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999998873
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.57 E-value=9.3e-13 Score=152.77 Aligned_cols=237 Identities=12% Similarity=0.113 Sum_probs=154.5
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
++++++++.++ +.|||.. ++++...+..+.. +..+++.|+. .+|++.+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~g~~-~~~v~~spdg-------------~~l~v~~~--------------- 198 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYA-VHISRMSASG-------------RYLLVIGR--------------- 198 (543)
T ss_dssp GEEEEEEGGGTEEEEEETT-TCCEEEEEECSTT-EEEEEECTTS-------------CEEEEEET---------------
T ss_pred CEEEEEEcCCCeEEEEECC-CceEEEEEecCcc-cceEEECCCC-------------CEEEEECC---------------
Confidence 57888888765 9999995 5667777763333 8889999863 25555331
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEEC--CCCeEEEEEeCCCcEEEEEeCC----C--eEEEEe--CCeEEEEECCCCce
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSF--QSHCYEHVLRFRSSVCMVRCSP----R--IVAVGL--ATQIYCFDALTLEN 223 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl--~tg~~V~tL~f~s~V~sV~~s~----~--iLaV~l--~~~I~IwD~~t~e~ 223 (838)
.++|++||+ .+++.+.++.....+..|++++ + +|+++. +++|.+||..+++.
T Consensus 199 ------------------d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 199 ------------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp ------------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred ------------------CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 268999999 8999999999888899999998 5 666654 68999999999999
Q ss_pred eeEEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhh
Q 003221 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (838)
Q Consensus 224 l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k 303 (838)
+.++.+....... +.+.. ...+ ..++++.+ +..+++
T Consensus 261 ~~~i~~~g~~~~~-~~~~~---~~~v-----~~i~~s~~---------------------------~~~~~v-------- 296 (543)
T 1nir_A 261 KQIVSTRGMTVDT-QTYHP---EPRV-----AAIIASHE---------------------------HPEFIV-------- 296 (543)
T ss_dssp EEEEECCEECSSS-CCEES---CCCE-----EEEEECSS---------------------------SSEEEE--------
T ss_pred ceeecccCcccCc-ccccc---CCce-----EEEEECCC---------------------------CCEEEE--------
Confidence 8887653211000 00000 0000 01112111 000000
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEE--EeccCCCCeEEEEECCCC
Q 003221 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSG 381 (838)
Q Consensus 304 ~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~--~~~aH~spIsaLaFSPdG 381 (838)
....+|.|.+||+.+.+.+. .+ .|...+..++|+|||
T Consensus 297 ----------------------------------------s~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg 335 (543)
T 1nir_A 297 ----------------------------------------NVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSH 335 (543)
T ss_dssp ----------------------------------------EETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTS
T ss_pred ----------------------------------------EECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCC
Confidence 12347899999998765433 44 356678889999999
Q ss_pred CEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc--ccccEEEEEEccC-CCEEEEEe-CCCeEEE
Q 003221 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI--TSATIQDICFSHY-SQWIAIVS-SKGTCHV 457 (838)
Q Consensus 382 tlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~--t~a~I~sIaFSpD-g~~Las~S-~dGTVhI 457 (838)
++|++++..+..|.|||+.. | +++..+.-|. +......+ ++|| ++.+++++ .++||.|
T Consensus 336 ~~l~va~~~~~~v~v~D~~t-------g----------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v 397 (543)
T 1nir_A 336 RYFMTAANNSNKVAVIDSKD-------R----------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL 397 (543)
T ss_dssp CEEEEEEGGGTEEEEEETTT-------T----------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred CEEEEEecCCCeEEEEECCC-------C----------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEE
Confidence 98877776566799999964 3 4555554332 22122223 5777 55566665 5899999
Q ss_pred EecCC
Q 003221 458 FVLSP 462 (838)
Q Consensus 458 w~l~~ 462 (838)
|++.+
T Consensus 398 ~d~~~ 402 (543)
T 1nir_A 398 IGTDP 402 (543)
T ss_dssp EECCT
T ss_pred EEeCC
Confidence 99988
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.56 E-value=6.1e-13 Score=148.18 Aligned_cols=174 Identities=18% Similarity=0.116 Sum_probs=118.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEe-CC---eEEEEECCCCceeeEEeecCCcccCCCCccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL-AT---QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l-~~---~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
++|++||+..++..........|.+++++++ .|+.+. ++ .|++||+.+++.. .+..++..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~------------- 224 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRH------------- 224 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSC-------------
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCc-------------
Confidence 6899999986554333456779999999986 666655 33 8999999998764 34433221
Q ss_pred cceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCC
Q 003221 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (838)
Q Consensus 247 ~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~g 324 (838)
...++++| ++|||...
T Consensus 225 ~~~~~~spdg~~la~~~~-------------------------------------------------------------- 242 (415)
T 2hqs_A 225 NGAPAFSPDGSKLAFALS-------------------------------------------------------------- 242 (415)
T ss_dssp EEEEEECTTSSEEEEEEC--------------------------------------------------------------
T ss_pred ccCEEEcCCCCEEEEEEe--------------------------------------------------------------
Confidence 22334433 23332210
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCC--EEEEEecCCC
Q 003221 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPS 402 (838)
Q Consensus 325 s~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~ 402 (838)
.+....|.+||+.+++. ..+..|...+.+++|+|||++|++++.++. .|.+||+..
T Consensus 243 --------------------~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~- 300 (415)
T 2hqs_A 243 --------------------KTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING- 300 (415)
T ss_dssp --------------------TTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-
T ss_pred --------------------cCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-
Confidence 11234699999998775 678889999999999999999999887443 466667742
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC---CeEEEEecCCC
Q 003221 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSPF 463 (838)
Q Consensus 403 ~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d---GTVhIw~l~~~ 463 (838)
| .+..+.. +...+.+++|||||++|+.++.+ .+|++|++...
T Consensus 301 ------~-----------~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 301 ------G-----------APQRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp ------S-----------CCEECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred ------C-----------CEEEEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 2 1222221 22368899999999999998875 58999998753
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.55 E-value=1.6e-12 Score=136.19 Aligned_cols=276 Identities=13% Similarity=0.095 Sum_probs=154.9
Q ss_pred eEEEEEe-cCcEEEEEccCCCceeEEe-eeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 76 QVLLLGY-QNGFQVLDVEDASNFNELV-SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 76 ~vL~lG~-~~G~qVWdv~~~g~v~ell-s~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
.+++.+. ++.+++||++..+....+. -.+.+.+..+++.|+. .+|+++..+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-------------~~l~~~~~~-------------- 58 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDK-------------RYLYVGVRP-------------- 58 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTS-------------SEEEEEETT--------------
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCC-------------CEEEEeecC--------------
Confidence 4455545 4569999996555443332 2355678888888752 355543321
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECC--CCe--EEEEEeCCCcEEEEEeCCC--eEEEEe--CCeEEEEECCCC---c
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHC--YEHVLRFRSSVCMVRCSPR--IVAVGL--ATQIYCFDALTL---E 222 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~--tg~--~V~tL~f~s~V~sV~~s~~--iLaV~l--~~~I~IwD~~t~---e 222 (838)
.++|.+|++. +++ .+..+.....+..++++++ .|+++. ++.|++||+.++ +
T Consensus 59 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~ 120 (343)
T 1ri6_A 59 ------------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG 120 (343)
T ss_dssp ------------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred ------------------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc
Confidence 1689999997 665 4455665668889999875 565554 457999999433 3
Q ss_pred eeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeC---CCceeecCCCCCCcccCCCCCCCCCCCCCCcceeee
Q 003221 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS---NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (838)
Q Consensus 223 ~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~---~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~ 297 (838)
....+..... ...+++++ ++|+.+. ..+.+|+... .+.+....
T Consensus 121 ~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~------------------~~~~~~~~ 168 (343)
T 1ri6_A 121 VVDVVEGLDG--------------CHSANISPDNRTLWVPALKQDRICLFTVSD------------------DGHLVAQD 168 (343)
T ss_dssp EEEEECCCTT--------------BCCCEECTTSSEEEEEEGGGTEEEEEEECT------------------TSCEEEEE
T ss_pred ccccccCCCC--------------ceEEEECCCCCEEEEecCCCCEEEEEEecC------------------CCceeeec
Confidence 3333222111 23466666 4555443 3445555310 00000000
Q ss_pred ehhhhhhhhccccccccccccccCCCC-CCCCccCCCccccccccccccCCCceEEEEECCC--CcE--EEEec---cC-
Q 003221 298 AMEHSKQFAAGLSKTLSKYCQELLPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI--ISQFK---AH- 368 (838)
Q Consensus 298 A~ds~k~la~Gl~ktls~y~~~~~p~g-s~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s--~~~--v~~~~---aH- 368 (838)
.. .+ ..+.+ ....+.+++.++.+.+ ....++.|.+||+.. ++. ...+. .+
T Consensus 169 ---------~~---~~------~~~~~~~~~~~~~~pdg~~l~~---~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 169 ---------PA---EV------TTVEGAGPRHMVFHPNEQYAYC---VNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp ---------EE---EE------ECSTTCCEEEEEECTTSSEEEE---EETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred ---------cc---cc------ccCCCCCcceEEECCCCCEEEE---EeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 00 00 00000 0011112222222211 234678999999953 332 22222 11
Q ss_pred --CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003221 369 --TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (838)
Q Consensus 369 --~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (838)
...+..++|+|+|++|+.+...+..|++||+... .+ ....+..+..+ ..+.+++|+|||++|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-----~~--------~~~~~~~~~~~---~~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-----GS--------VLSKEGFQPTE---TQPRGFNVDHSGKYL 291 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----SC--------CEEEEEEEECS---SSCCCEEECTTSSEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC-----CC--------ceEEeeeecCC---CccceEEECCCCCEE
Confidence 2356789999999988866644556999999631 01 11333344322 237889999999999
Q ss_pred EEEe-CCCeEEEEecCCCCC
Q 003221 447 AIVS-SKGTCHVFVLSPFGG 465 (838)
Q Consensus 447 as~S-~dGTVhIw~l~~~gg 465 (838)
++++ .+++|.||+++...+
T Consensus 292 ~~~~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVGEQG 311 (343)
T ss_dssp EEECTTTCEEEEEEEETTTT
T ss_pred EEecCCCCeEEEEEEcCCCc
Confidence 9888 679999998876544
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.53 E-value=2.7e-12 Score=148.93 Aligned_cols=280 Identities=11% Similarity=0.100 Sum_probs=170.4
Q ss_pred CeEEEEEecCcEEEEEcc-CCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVE-DASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~-~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+.+++.+.++.+.+||+. .++.+...+. +...++.+++.|.+- |.+ .+|++...
T Consensus 191 ~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~-------~dg--~~l~v~~~--------------- 245 (543)
T 1nir_A 191 RYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKG-------YED--RYTIAGAY--------------- 245 (543)
T ss_dssp CEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTT-------CTT--TEEEEEEE---------------
T ss_pred CEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcC-------CCC--CEEEEEEc---------------
Confidence 345555555569999993 2355555554 344578899987110 012 25554221
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC------------CcEEEEEeCCC--eEEEEe--CCeEEEEE
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR------------SSVCMVRCSPR--IVAVGL--ATQIYCFD 217 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~------------s~V~sV~~s~~--iLaV~l--~~~I~IwD 217 (838)
.+++|.+||..+++++.++..+ ..|.+|.++++ .++++. +++|.+||
T Consensus 246 -----------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd 308 (543)
T 1nir_A 246 -----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 308 (543)
T ss_dssp -----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred -----------------cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence 1378999999999999998652 27899999874 444444 45899999
Q ss_pred CCCCceee--EEeecCCcccCCCCccccccccceeEEcc--cEEEEe---CCCceeecCCCCCCcccCCCCCCCCCCCCC
Q 003221 218 ALTLENKF--SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYA---SNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (838)
Q Consensus 218 ~~t~e~l~--tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys---~~~~~l~~~G~vs~q~l~~~~~s~stsps~ 290 (838)
+.+++.+. ++..... ...++++| ++|..+ ++.+.+|+.- .
T Consensus 309 ~~~~~~l~~~~i~~~~~--------------~~~~~~spdg~~l~va~~~~~~v~v~D~~-------------------t 355 (543)
T 1nir_A 309 YKDIDNLTVTSIGAAPF--------------LHDGGWDSSHRYFMTAANNSNKVAVIDSK-------------------D 355 (543)
T ss_dssp CTTSSSCEEEEEECCSS--------------CCCEEECTTSCEEEEEEGGGTEEEEEETT-------------------T
T ss_pred ecCCCcceeEEeccCcC--------------ccCceECCCCCEEEEEecCCCeEEEEECC-------------------C
Confidence 99887655 3321111 22466766 554322 3456667631 0
Q ss_pred CcceeeeehhhhhhhhccccccccccccccCC-CCCCCCccCCCc-ccccccccccc-CCCceEEEEECCC-------Cc
Q 003221 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLP-DGSSSPVSPNSV-WKVGRHAGADM-DNAGIVVVKDFVT-------RA 360 (838)
Q Consensus 291 gslva~~A~ds~k~la~Gl~ktls~y~~~~~p-~gs~s~~s~n~~-~k~~~~~~~~g-~~~G~V~VwDl~s-------~~ 360 (838)
+.+++.+.. | ..| .+....+. ++. +.... ++ ..+++|.|||+.+ .+
T Consensus 356 g~l~~~i~~--------g-----------~~ph~g~g~~~~-~p~~g~~~~----s~~~~d~~V~v~d~~~~~~~~~~~~ 411 (543)
T 1nir_A 356 RRLSALVDV--------G-----------KTPHPGRGANFV-HPKYGPVWS----TSHLGDGSISLIGTDPKNHPQYAWK 411 (543)
T ss_dssp TEEEEEEEC--------S-----------SSBCCTTCEEEE-ETTTEEEEE----EEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred CeEEEeecc--------C-----------CCCCCCCCcccC-CCCCccEEE----eccCCCceEEEEEeCCCCCchhcCe
Confidence 111111000 0 000 00000010 111 11111 22 2478999999998 88
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEec---C---CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-c------
Q 003221 361 IISQFKAHTSPISALCFDPSGTLLVTASV---Y---GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-R------ 427 (838)
Q Consensus 361 ~v~~~~aH~spIsaLaFSPdGtlLATAS~---d---Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-R------ 427 (838)
++.++..|...+..++|+|+|++|++++. + +..|.|||+.+ + ..+|+.. -
T Consensus 412 ~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~-------~----------~~~~~~~~v~~~~~~ 474 (543)
T 1nir_A 412 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-------L----------DAKYQVLPIAEWADL 474 (543)
T ss_dssp EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC-------T----------TSCCEEECHHHHHCC
T ss_pred EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC-------C----------CCCeEEeechhhccc
Confidence 99999999999999999999999999872 1 23599999965 2 1222221 1
Q ss_pred ccccccEEEEEEccCCCEEEEE-----eCCCeEEEEecCCCCCccccc
Q 003221 428 GITSATIQDICFSHYSQWIAIV-----SSKGTCHVFVLSPFGGDSGFQ 470 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~-----S~dGTVhIw~l~~~gg~~~~~ 470 (838)
+.....+..+.|+|||++|.++ +.+++|.|||..+.+....++
T Consensus 475 ~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 475 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 1112368999999999999977 347999999998876544443
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.53 E-value=7.2e-13 Score=134.64 Aligned_cols=217 Identities=9% Similarity=0.004 Sum_probs=138.7
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeCCeEEEEECCC-CceeeEEeecCCcccCCCCccccccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t-~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
+++|++||+.+++....+.+...|.+++++++ +|+++.++.|++||+.+ ++.......+... ...
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------~~~ 88 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI------------CNN 88 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC------------BCS
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc------------ccc
Confidence 47899999999998877788889999999985 88888899999999998 7654332222110 134
Q ss_pred eeEEcc--cEEEEeCC----CceeecC--CCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccccccccccccc
Q 003221 249 PMAVGP--RWLAYASN----TLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (838)
Q Consensus 249 ~~Alsp--r~LAys~~----~~~l~~~--G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~ 320 (838)
.+++++ ++|++... ...+|.. .......+...
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------------------------------- 128 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN---------------------------------------- 128 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS----------------------------------------
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC----------------------------------------
Confidence 567776 78887652 2333321 00000110000
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 321 ~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~-s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
.......++++.+.+.+ .+..++.+.||++. .......+..|...+.+++|+|+|++|+.++..+..++||++
T Consensus 129 ---~~~~~~~~spdg~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 129 ---LPSYWHGWSPDGKSFTY---CGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp ---SSEEEEEECTTSSEEEE---EEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ---CCccceEECCCCCEEEE---EECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEE
Confidence 00000111122222221 13456788888853 223456778888999999999999998887753445899998
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-----------CeEEEEecCCCC
Q 003221 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-----------GTCHVFVLSPFG 464 (838)
Q Consensus 400 ~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d-----------GTVhIw~l~~~g 464 (838)
... + ..+..+..+ ...+.+++|+|||++|++++.+ +++++|++....
T Consensus 203 ~~~------~----------~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 203 RVD------G----------SSVERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp ETT------S----------SCEEECCCC--SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred CCC------C----------CCcEEEecC--CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 532 1 133444322 2468999999999999998876 569999987543
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.50 E-value=4.2e-11 Score=126.43 Aligned_cols=174 Identities=13% Similarity=0.081 Sum_probs=121.9
Q ss_pred CEEEEEECCCCeEEEEEeCCC----------cEEEEEeCCC--eEEEEe---CCeEEEEECCCCceeeEEeecCCcccCC
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS----------SVCMVRCSPR--IVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAG 237 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s----------~V~sV~~s~~--iLaV~l---~~~I~IwD~~t~e~l~tL~t~p~p~~~~ 237 (838)
+.|.+||.++++.+..+.... .+.++.++++ .|+++. ++.|++||+.+++....+......
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---- 186 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM---- 186 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT----
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc----
Confidence 689999999999999998753 2688889764 566554 567999999999877665421110
Q ss_pred CCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccc
Q 003221 238 QGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 317 (838)
Q Consensus 238 ~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~ 317 (838)
...++ +.++. ..+.
T Consensus 187 ---------~~~~~-------~s~dg---------------------------~~l~----------------------- 200 (353)
T 3vgz_A 187 ---------STGLA-------LDSEG---------------------------KRLY----------------------- 200 (353)
T ss_dssp ---------CCCCE-------EETTT---------------------------TEEE-----------------------
T ss_pred ---------cceEE-------ECCCC---------------------------CEEE-----------------------
Confidence 11122 22210 0000
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc----CCCCeEEEEECCCCCEEEEEecCCCE
Q 003221 318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----HTSPISALCFDPSGTLLVTASVYGNN 393 (838)
Q Consensus 318 ~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a----H~spIsaLaFSPdGtlLATAS~dGt~ 393 (838)
.+..++.|.+||+.+++.+..+.. +...+..++|+|+|++|+.++.++..
T Consensus 201 --------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 201 --------------------------TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp --------------------------EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred --------------------------EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence 012367899999999998877765 56678899999999988888876678
Q ss_pred EEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCC
Q 003221 394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (838)
Q Consensus 394 IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~~ 463 (838)
|.+||+.. + +.+..+..+. -..++|+||+++|+++. .+++|++|++...
T Consensus 255 v~~~d~~~-------~----------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 255 VLVVDTRN-------G----------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEEETTT-------C----------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEEECCC-------C----------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 99999853 3 3444544332 24699999999776666 6899999998754
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.47 E-value=2e-12 Score=152.42 Aligned_cols=100 Identities=13% Similarity=0.201 Sum_probs=73.8
Q ss_pred CCCceEEEEECCCCcEEEEeccCCC----CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~s----pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~ 421 (838)
..++.|.+||+.+++....+..|.. .+..++|+|||++|++++.+|+ ++||.+... | .
T Consensus 309 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~------~----------~- 370 (741)
T 2ecf_A 309 QKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK------G----------K- 370 (741)
T ss_dssp SSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS------S----------C-
T ss_pred CCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC------C----------C-
Confidence 4568899999999988777776654 5678999999999999988775 788887431 2 2
Q ss_pred EEEEecccccccEEEE-EEccCCCEEEEEeC-CC--eEEEEecCCCCC
Q 003221 422 LYKLHRGITSATIQDI-CFSHYSQWIAIVSS-KG--TCHVFVLSPFGG 465 (838)
Q Consensus 422 l~~L~RG~t~a~I~sI-aFSpDg~~Las~S~-dG--TVhIw~l~~~gg 465 (838)
+..|..+ ...|.++ +|||||++|+..+. ++ +++||+++..+.
T Consensus 371 ~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 371 AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 3444333 3457777 59999998865544 44 899999976443
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.45 E-value=6.5e-11 Score=126.14 Aligned_cols=103 Identities=12% Similarity=0.221 Sum_probs=69.1
Q ss_pred CceEEEEECCC--CcE--EEEeccCC------CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCC
Q 003221 348 AGIVVVKDFVT--RAI--ISQFKAHT------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (838)
Q Consensus 348 ~G~V~VwDl~s--~~~--v~~~~aH~------spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~ 417 (838)
++.|.+||+.. ++. +..+..+. ..+..++|+|||++|+.++..+..|.||++.+. |
T Consensus 208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~------g-------- 273 (347)
T 3hfq_A 208 SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD------G-------- 273 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG------G--------
T ss_pred CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC------C--------
Confidence 56788888763 432 23333322 348899999999988655544556999998531 2
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCC-CeEEEEecCCCCCc
Q 003221 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGD 466 (838)
Q Consensus 418 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d-GTVhIw~l~~~gg~ 466 (838)
....+..+..+ ...+.+++|+|||++|++++.+ ++|.||+++...+.
T Consensus 274 ~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 274 HLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp CEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred cEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 11334444321 2347899999999999888765 89999998776554
No 138
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.43 E-value=5.7e-11 Score=124.93 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=67.0
Q ss_pred EEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003221 353 VKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (838)
Q Consensus 353 VwDl~s~~~-v~~~~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t 430 (838)
.+|..+++. ...+..+...+..++|+| ||++|+++ ++ .|.+||+.. + +.+..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~-- 294 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN-RLAKYDLKQ-------R----------KLIKAANLD-- 294 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS--
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC-eEEEEECcc-------C----------eEEEEEcCC--
Confidence 367766653 233445677889999999 99999998 34 599999853 3 344555433
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 431 ~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
..+.+++|+|||++|++++.+++|+||++....
T Consensus 295 -~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 295 -HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp -SCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred -CCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 246789999999999999999999999997654
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.42 E-value=3.8e-12 Score=149.36 Aligned_cols=275 Identities=13% Similarity=0.050 Sum_probs=159.1
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccC---cEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg---~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~ 151 (838)
+++++.+.++.+++||+. +++...++..+.. .|..+++.|++ ..||....+..
T Consensus 28 g~~~~~~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg-------------~~l~~~~~~~~---------- 83 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDR-------------EYALFSYNVEP---------- 83 (723)
T ss_dssp SCBCCCCSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTS-------------SEEEEEESCCC----------
T ss_pred CcEEEEeCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCC-------------CEEEEEecCcc----------
Confidence 455655555569999995 5677777776665 48999999863 25665443211
Q ss_pred CCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC----CcEEEEEeCCC--eEEEEeCCeEEEEECCCCceee
Q 003221 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR----SSVCMVRCSPR--IVAVGLATQIYCFDALTLENKF 225 (838)
Q Consensus 152 ~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~----s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~l~ 225 (838)
+ +. ......+.+||+.+++. ..+... ..|..++++|+ .||.+..++|++||+.+++...
T Consensus 84 ----~----~~------~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~ 148 (723)
T 1xfd_A 84 ----I----YQ------HSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR 148 (723)
T ss_dssp ----C----SS------SCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE
T ss_pred ----c----ee------ecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEE
Confidence 0 00 01237899999999986 344322 23888999886 8888888999999999987654
Q ss_pred EEeecCCcccCCCCccc------cccccceeEEcc--cEEEEeCC---CceeecCCCCCCcccCCCCCCCCCCCCCCcce
Q 003221 226 SVLTYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASN---TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLV 294 (838)
Q Consensus 226 tL~t~p~p~~~~~~~~~------~~~g~g~~Alsp--r~LAys~~---~~~l~~~G~vs~q~l~~~~~s~stsps~gslv 294 (838)
......... ...|.+. ..-....++++| ++|||... .+.+|..... .
T Consensus 149 ~~~~~~~~~-~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~-----~---------------- 206 (723)
T 1xfd_A 149 VVSTGKEGV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY-----T---------------- 206 (723)
T ss_dssp EECCCBTTT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC-----S----------------
T ss_pred EecCCCCCc-eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeecc-----C----------------
Confidence 332211110 0000000 000013477777 77887642 1112211000 0
Q ss_pred eeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC------
Q 003221 295 ARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH------ 368 (838)
Q Consensus 295 a~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH------ 368 (838)
....+......+..+ + .......|.+||+.+++....+..|
T Consensus 207 -----------------------~~~~~~~~~~~~~~~--G--------~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 207 -----------------------GSIYPTVKPYHYPKA--G--------SENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp -----------------------SSSSCCCEEEECCBT--T--------SCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred -----------------------CcCCCcceeccCCCC--C--------CCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 000000000000000 0 0122458999999988866667665
Q ss_pred CCCeEEEEECCCCCEEEEEecCC---CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccE----EEEEEcc
Q 003221 369 TSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI----QDICFSH 441 (838)
Q Consensus 369 ~spIsaLaFSPdGtlLATAS~dG---t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I----~sIaFSp 441 (838)
...+..++|||||++|++.+.++ ..|++||+.. | +....+. +.+...+ .+++|||
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-------g----------~~~~~~~-~~~~~~~~~~~~~~~~sp 315 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-------G----------VCTKKHE-DESEAWLHRQNEEPVFSK 315 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-------C----------CEEEEEE-EECSSCCCCCCCCCEECT
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-------C----------cceEEEE-eccCCEEeccCCCceEcC
Confidence 67899999999999998876532 4689999853 3 2222221 1112223 3789999
Q ss_pred CCCEEEEE--eCCC----eEEEEecC
Q 003221 442 YSQWIAIV--SSKG----TCHVFVLS 461 (838)
Q Consensus 442 Dg~~Las~--S~dG----TVhIw~l~ 461 (838)
||++|+.. ..++ +.+||.++
T Consensus 316 dg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 316 DGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp TSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CCCeEEEEEecccCCCcceeEEEEEe
Confidence 99988764 4567 66777665
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.42 E-value=5.9e-12 Score=147.75 Aligned_cols=222 Identities=14% Similarity=0.118 Sum_probs=131.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeCCeEEEEECCC-----CceeeEEeecCCcccCCCCcc---c
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLATQIYCFDALT-----LENKFSVLTYPVPQLAGQGAV---G 242 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t-----~e~l~tL~t~p~p~~~~~~~~---~ 242 (838)
++|.+||+.+++..........+.+++++++ .|+++.++.|++||+.+ ++....... .... ...+.+ .
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~-~~~~-~~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTID-GTET-LVYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSC-CBTT-EEESSCCGGG
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccC-CCCC-eEcccchhhh
Confidence 5799999999988776666778888999886 78888889999999998 765332111 1100 000000 0
Q ss_pred cccccceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcccccccccccccc
Q 003221 243 INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (838)
Q Consensus 243 ~~~g~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~ 320 (838)
-......++++| ++|||... +...+..-.+.... . ... ....+ .
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~-----d~~~~~~~~~~~~~--~-----~~~-------------------~~~~~---~ 224 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRM-----DQSMVKPTPIVDYH--P-----LEA-------------------ESKPL---Y 224 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEE-----ECTTSCCEEEEECC--S-----SSC-------------------EEEEE---C
T ss_pred hcCCCceEEECCCCCEEEEEEE-----CCCCCceEEeeccC--C-----CCC-------------------ceEEe---e
Confidence 000013466776 77777641 00000000000000 0 000 00000 0
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEecCC----CEE
Q 003221 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYG----NNI 394 (838)
Q Consensus 321 ~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~--aH~spIsaLaFSPdGtlLATAS~dG----t~I 394 (838)
+|. ++ ....++.|.+||+.+++...... .|...+.+++|+|||++|++++.++ ..|
T Consensus 225 y~~-----------------~g-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v 286 (706)
T 2z3z_A 225 YPM-----------------AG-TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKV 286 (706)
T ss_dssp CCB-----------------TT-SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEE
T ss_pred CCC-----------------CC-CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEE
Confidence 000 00 12345789999999887654442 5778899999999999999988754 269
Q ss_pred EEEecCCCcccCCCCCCccccCCcceEEEEEecccccc---cEEEEEEcc--CCCEEEEEeCCCeEEEEecCCCCC
Q 003221 395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 395 rVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a---~I~sIaFSp--Dg~~Las~S~dGTVhIw~l~~~gg 465 (838)
++||+.. | ..+..+....... .+.+++||| ||++|++++.+|+++||.++..++
T Consensus 287 ~~~d~~~-------g----------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 287 NAYDAET-------G----------RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp EEEETTT-------C----------CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred EEEECCC-------C----------ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 9999853 2 1222222111111 246789999 999999999999999999974443
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.40 E-value=1.2e-10 Score=125.13 Aligned_cols=105 Identities=11% Similarity=0.258 Sum_probs=74.3
Q ss_pred CCceEEEEECCCCcE--EEEe---ccCCCCeEEEEECCCCCEEEEEecC-CCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 347 NAGIVVVKDFVTRAI--ISQF---KAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~--v~~~---~aH~spIsaLaFSPdGtlLATAS~d-Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
.++.|.+||+.+++. +..+ ..|......++|+|||++|+.+... +..|+||++.+. .| ...
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~g--------~~~ 297 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----NG--------TLT 297 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----TC--------CEE
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----CC--------cEE
Confidence 367899999987653 2333 3344557899999999999887775 467999999532 12 112
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCCCcc
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDS 467 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~~gg~~ 467 (838)
.+..+..| ..+.+++|+|||++|++++ .+++|.||.++...+..
T Consensus 298 ~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 298 KVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 33344322 3578899999999999888 67999999988765543
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.38 E-value=3.2e-11 Score=122.41 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=65.6
Q ss_pred CceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC----------CEEEEEecCCCcccCCCCCCccccC
Q 003221 348 AGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVYG----------NNINIFRIMPSCMRSGSGNHKYDWN 416 (838)
Q Consensus 348 ~G~V~VwDl~-s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG----------t~IrVwdi~p~~~~~~~G~~~~~~~ 416 (838)
++.+.||++. .+..+..+..|...+..++|+|+|++|++++.++ ..|.+||+.. +
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-------~------- 259 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG-------G------- 259 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS-------C-------
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC-------C-------
Confidence 4566777765 4456678888989999999999999999988753 4599999853 2
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003221 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (838)
Q Consensus 417 ~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dG 453 (838)
....+..+.. +...|.+++|+||+++|++++.+.
T Consensus 260 -~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 260 -NVETLFDLFG--GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -SCEEEEEEEE--STTTSCSCCBCTTSSEEEEEEECC
T ss_pred -CceeeeccCC--CCcccccceECCCCCEEEEEEecc
Confidence 1134444432 234588899999999999888764
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.37 E-value=3.2e-10 Score=119.24 Aligned_cols=182 Identities=10% Similarity=0.093 Sum_probs=118.5
Q ss_pred CEEEEEECCCCeEEEEEeCCC-cEEEEEeCCC--eEEEEe--CCeEEEEECCCCce-eeEEeecCCcccCCCCccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPR--IVAVGL--ATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s-~V~sV~~s~~--iLaV~l--~~~I~IwD~~t~e~-l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
++|.+||+.+++.+..+.+.. .+ .++++++ .|+++. +++|++||+.+++. ...+.....|
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------- 85 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS------------- 85 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC-------------
T ss_pred CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC-------------
Confidence 689999999999999888754 45 9999875 455544 45899999999886 4444433222
Q ss_pred cceeEEcccE-EEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCC
Q 003221 247 YGPMAVGPRW-LAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (838)
Q Consensus 247 ~g~~Alspr~-LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs 325 (838)
.. +++.++... +++
T Consensus 86 --------~~~~~~s~dg~~---------------------------l~~------------------------------ 100 (331)
T 3u4y_A 86 --------MADVDITPDDQF---------------------------AVT------------------------------ 100 (331)
T ss_dssp --------CCCEEECTTSSE---------------------------EEE------------------------------
T ss_pred --------ccceEECCCCCE---------------------------EEE------------------------------
Confidence 12 233221100 000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCE-EEEEecCCCcc
Q 003221 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN-INIFRIMPSCM 404 (838)
Q Consensus 326 ~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~-IrVwdi~p~~~ 404 (838)
.. .....+.|.+||+.+++.+..+..+.. ..+++|+|||++|++++.++.. |.+|++.+.
T Consensus 101 ---------------~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~-- 161 (331)
T 3u4y_A 101 ---------------VT-GLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDAD-- 161 (331)
T ss_dssp ---------------CC-CSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTT--
T ss_pred ---------------ec-CCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCC--
Confidence 00 001224899999999998888876554 5899999999877666655455 999999642
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCCC
Q 003221 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG 465 (838)
Q Consensus 405 ~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~~gg 465 (838)
|.. . ......+.. ...+..++|+|||++|++++ .+++|++|++.....
T Consensus 162 ----g~~-~-----~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 162 ----GVL-F-----DTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ----CCE-E-----EEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ----CcE-e-----ecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 210 0 000112211 23478999999999776554 688999999976543
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.37 E-value=5.2e-10 Score=118.02 Aligned_cols=220 Identities=6% Similarity=-0.016 Sum_probs=143.4
Q ss_pred CeEEEEEec-CcEEEEEccCCCceeEEeeeccCc---------EEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcC
Q 003221 75 KQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGP---------VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTL 144 (838)
Q Consensus 75 ~~vL~lG~~-~G~qVWdv~~~g~v~ells~hdg~---------V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~ 144 (838)
+.+++++.. +.+.+||++ .+++...+..+++. +..+.+.|+. ..|++...+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------------~~l~~~~~~----- 161 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAK-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-------------NTVYISGIG----- 161 (353)
T ss_dssp TEEEEEETTTTEEEEEETT-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-------------TEEEEEEES-----
T ss_pred CEEEEEecCCCEEEEEeCC-CCeeEEEEecCCCccccccCCCCCceEEECCCC-------------CEEEEEecC-----
Confidence 346666664 459999995 46665555554322 5778888752 244442211
Q ss_pred CCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEeCCC--eEEEEe-CCeEEEEECCC
Q 003221 145 APGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVGL-ATQIYCFDALT 220 (838)
Q Consensus 145 ~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~-f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t 220 (838)
..+.|.+||+++++.+..+. ....+..+.++++ .|+++. ++.|++||+.+
T Consensus 162 --------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~ 215 (353)
T 3vgz_A 162 --------------------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD 215 (353)
T ss_dssp --------------------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT
T ss_pred --------------------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 13689999999999999998 4445888888764 565554 56899999999
Q ss_pred CceeeEEeecCC-cccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeeh
Q 003221 221 LENKFSVLTYPV-PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (838)
Q Consensus 221 ~e~l~tL~t~p~-p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ 299 (838)
++....+..... +. ..+ .-+++.++.. .+
T Consensus 216 ~~~~~~~~~~~~~~~------------~~~-----~~~~~s~dg~---------------------------~l------ 245 (353)
T 3vgz_A 216 NKILSRKKLLDDGKE------------HFF-----INISLDTARQ---------------------------RA------ 245 (353)
T ss_dssp TEEEEEEECCCSSSC------------CCE-----EEEEEETTTT---------------------------EE------
T ss_pred CeEEEEEEcCCCCCC------------ccc-----ceEEECCCCC---------------------------EE------
Confidence 987776653211 10 000 1123332210 00
Q ss_pred hhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC
Q 003221 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP 379 (838)
Q Consensus 300 ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSP 379 (838)
|+ ....++.|.+||+.+++.+..+..+. + ..++|+|
T Consensus 246 ----------------~~--------------------------~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~s~ 281 (353)
T 3vgz_A 246 ----------------FI--------------------------TDSKAAEVLVVDTRNGNILAKVAAPE-S-LAVLFNP 281 (353)
T ss_dssp ----------------EE--------------------------EESSSSEEEEEETTTCCEEEEEECSS-C-CCEEEET
T ss_pred ----------------EE--------------------------EeCCCCEEEEEECCCCcEEEEEEcCC-C-ceEEECC
Confidence 00 01235789999999999888887654 3 5699999
Q ss_pred CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003221 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (838)
Q Consensus 380 dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dG 453 (838)
+|++|+.++..+..|.+||+.. + +.+..+..+ ..+.+++|+|||++|+++..++
T Consensus 282 dg~~l~v~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 282 ARNEAYVTHRQAGKVSVIDAKS-------Y----------KVVKTFDTP---THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTT-------T----------EEEEEEECC---SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCEEEEEECCCCeEEEEECCC-------C----------eEEEEEecC---CCCCeEEEcCCCCEEEEEEccc
Confidence 9997777775566799999853 3 344555433 2589999999999888877764
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.33 E-value=1.9e-11 Score=144.00 Aligned_cols=250 Identities=10% Similarity=0.032 Sum_probs=140.0
Q ss_pred CEEEEEECCCCeEEEEEeCC-------------------------CcEEEEEeCCC--eEEEEeCCeEEEEECCCCc--e
Q 003221 173 TAVRFYSFQSHCYEHVLRFR-------------------------SSVCMVRCSPR--IVAVGLATQIYCFDALTLE--N 223 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~-------------------------s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e--~ 223 (838)
.+|.+||+.+++....+.++ ..|.+++++++ .|+++..++|++||+.+++ .
T Consensus 64 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 64 LDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAA 143 (741)
T ss_dssp EEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTS
T ss_pred cEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcce
Confidence 47999999999987777653 23788899886 7888888999999999872 2
Q ss_pred eeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCC-CceeecCCCCCCcccCCCC-------------------
Q 003221 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTPSG------------------- 281 (838)
Q Consensus 224 l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~-~~~l~~~G~vs~q~l~~~~------------------- 281 (838)
...+..+.. ....++++| ++|||..+ .+.+|+...-....++...
T Consensus 144 ~~~l~~~~~-------------~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~ 210 (741)
T 2ecf_A 144 VRQLTHGEG-------------FATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDR 210 (741)
T ss_dssp CCBCCCSSS-------------CEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCC
T ss_pred EEEcccCCc-------------ccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeecccc
Confidence 333333222 134577887 88998765 4667765211111221100
Q ss_pred -CCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCC--CceEEEEECCC
Q 003221 282 -VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDN--AGIVVVKDFVT 358 (838)
Q Consensus 282 -~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~--~G~V~VwDl~s 358 (838)
..+..||.+..++.. ..+.... ..+. .....|... .......+. .+.. ...|.+||+.+
T Consensus 211 ~~~~~~SpDg~~l~~~-~~d~~~~------~~~~--~~~~~p~~~--------~~~~~~~~~-~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYA-RIDESPV------PVQK--RYEVYADRT--------DVIEQRYPA-AGDANVQVKLGVISPAE 272 (741)
T ss_dssp CCSEEECTTSSCEEEE-EEECTTS------CEEE--EEEECSSCE--------EEEEEECCB-TTSCCCEEEEEEECSST
T ss_pred ccceEECCCCCEEEEE-EEcCCCC------ceEe--cCCCCCCcc--------cceEeecCC-CCCCCCeeEEEEEECCC
Confidence 111122322221110 0000000 0000 000000000 000000000 0111 22688899988
Q ss_pred -CcEEEEec--cCCCCeEEEEECCCCCEEEEEec----CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003221 359 -RAIISQFK--AHTSPISALCFDPSGTLLVTASV----YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (838)
Q Consensus 359 -~~~v~~~~--aH~spIsaLaFSPdGtlLATAS~----dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~ 431 (838)
++...... .|...+..++| |||++|+.++. +...|++||+.. | .....+ .+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-------g----------~~~~~~-~~~~~ 333 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-------N----------QQRVLA-HETSP 333 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-------C----------CEEEEE-EEECS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-------C----------ceEEEE-EcCCC
Confidence 77554443 48889999999 99999998764 234588999853 3 122222 22121
Q ss_pred c---cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCccccccC
Q 003221 432 A---TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (838)
Q Consensus 432 a---~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg~~~~~~H 472 (838)
. .+.+++|||||++|++++.+|+++||.++..++...+..|
T Consensus 334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~ 377 (741)
T 2ecf_A 334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHG 377 (741)
T ss_dssp SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCS
T ss_pred CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeec
Confidence 1 3468999999999999999999999998754443333333
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.31 E-value=1.4e-09 Score=116.71 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=69.0
Q ss_pred CCceEEEEECCCCc-------E------EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCcc
Q 003221 347 NAGIVVVKDFVTRA-------I------ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (838)
Q Consensus 347 ~~G~V~VwDl~s~~-------~------v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~ 413 (838)
.++.|.+||+.... . ......+......++|+|||++|+.++..+..|++|++.. |.
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-------g~--- 244 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-------GM--- 244 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-------TE---
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-------Cc---
Confidence 35688999876533 1 1112234455789999999999988886566799999853 21
Q ss_pred ccCCcceEEEEEeccc-ccccEEEEEEccCCCEEEEEeCC--CeEEEEecCCCC
Q 003221 414 DWNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSK--GTCHVFVLSPFG 464 (838)
Q Consensus 414 ~~~~~~~~l~~L~RG~-t~a~I~sIaFSpDg~~Las~S~d--GTVhIw~l~~~g 464 (838)
...+..+.... ......+|+|||||++|+++..+ ++|.||++++..
T Consensus 245 -----~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~ 293 (361)
T 3scy_A 245 -----LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN 293 (361)
T ss_dssp -----EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT
T ss_pred -----eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC
Confidence 12233332211 11246899999999999776665 899999997543
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.31 E-value=1.1e-09 Score=116.74 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCceEEEEECC-CCcE--EEEeccCC-CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 347 NAGIVVVKDFV-TRAI--ISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 347 ~~G~V~VwDl~-s~~~--v~~~~aH~-spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
.++.|.+||+. +++. +..+..+. .....++|+|||++|+.++..+..|+||++... .| ....+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g--------~~~~~ 226 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TG--------AFTQL 226 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEEE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CC--------ceEEe
Confidence 35689999998 4443 22333332 357789999999988887776778999998531 12 11122
Q ss_pred EEEecccc----cccEEEEEEccCCCEEE-EEeCCCeEEEEecCC
Q 003221 423 YKLHRGIT----SATIQDICFSHYSQWIA-IVSSKGTCHVFVLSP 462 (838)
Q Consensus 423 ~~L~RG~t----~a~I~sIaFSpDg~~La-s~S~dGTVhIw~l~~ 462 (838)
..+..... ...+..++|||||++|+ +...+++|+||++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 23321111 13488999999999885 455689999999974
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.30 E-value=1.5e-10 Score=130.15 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=77.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
+..||+|+|||+.++..+....+|...|.+++|+|+|++||+|+.||+ |+|||+. + .....
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~--------~----------~~~~~ 228 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT--------L----------QEKKV 228 (434)
T ss_dssp EETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT--------C----------CEEEE
T ss_pred EECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC--------C----------ccccc
Confidence 456899999999998777777889999999999999999999999876 9999984 1 12223
Q ss_pred Eec--c---cccccEEEEEEccCCCEEEEEe-CCC------eEEEEecCCCCC
Q 003221 425 LHR--G---ITSATIQDICFSHYSQWIAIVS-SKG------TCHVFVLSPFGG 465 (838)
Q Consensus 425 L~R--G---~t~a~I~sIaFSpDg~~Las~S-~dG------TVhIw~l~~~gg 465 (838)
+.. . .+...|.+++|++++.++++.+ .+| .+++|++...++
T Consensus 229 ~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 229 IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred ccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 321 1 1123799999999999886643 443 389999976543
No 149
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.28 E-value=5e-10 Score=121.48 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=54.0
Q ss_pred CeEEEE-ECCCCCEEEEEecCCC-----EEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---
Q 003221 371 PISALC-FDPSGTLLVTASVYGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH--- 441 (838)
Q Consensus 371 pIsaLa-FSPdGtlLATAS~dGt-----~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp--- 441 (838)
.+..++ |+|||++|++++..+. .|+||++.+. |. ...+..+... ....+..++|+|
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~------g~--------~~~~~~~~~~-~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS--------IEKQLFLSPT-PTSGGHSNAVSPCPW 319 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC--------EEEEEEEEEC-SSCCTTCCCEEECTT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC------CC--------EEEeeeeeec-CCCCcccceecCCCc
Confidence 478999 9999999988776443 7999998531 31 0111111111 112356789999
Q ss_pred CCCEEEEEeCC-CeEEEEecCCC
Q 003221 442 YSQWIAIVSSK-GTCHVFVLSPF 463 (838)
Q Consensus 442 Dg~~Las~S~d-GTVhIw~l~~~ 463 (838)
||++|++++.+ ++|.||+++..
T Consensus 320 dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999875 89999999753
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.27 E-value=6.2e-10 Score=130.58 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=66.9
Q ss_pred CCceEEEEECC-CCcEEEEeccCCCCeEE-EEECCCCCEEEEEecCCC----EEEEEecCCCcccCCCCCCccccCCcce
Q 003221 347 NAGIVVVKDFV-TRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 347 ~~G~V~VwDl~-s~~~v~~~~aH~spIsa-LaFSPdGtlLATAS~dGt----~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
.+|.++||++. +++.+..+..|...+.. ++|+|||+.|+.++.++. .|..||+.. |
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------~----------- 392 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-------G----------- 392 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-------C-----------
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-------C-----------
Confidence 35667777765 56677888889888987 899999998877766543 455555432 2
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEecCCC
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSPF 463 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d----GTVhIw~l~~~ 463 (838)
.+..+. +...+.+++|||||++|+.+..+ +++++|++...
T Consensus 393 ~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 393 KTKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CCEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred Cceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 122222 22358899999999999877544 46999998653
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.26 E-value=2.1e-10 Score=131.92 Aligned_cols=91 Identities=9% Similarity=0.065 Sum_probs=70.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC-CEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
+.|.+||+.+++. ..+..|...+..++|||||++||+++.+| ..|++||+.. | ... +..
T Consensus 175 ~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-------~----------~~~--~~~ 234 (582)
T 3o4h_A 175 VSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-------G----------SVE--DLE 234 (582)
T ss_dssp EEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-------C----------CEE--ECC
T ss_pred eEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-------C----------cEE--Ecc
Confidence 5699999988775 47788999999999999999999777766 2589999853 2 222 223
Q ss_pred ccccccEEEEE--------EccCCCEEEEEeCCCeEEEEec
Q 003221 428 GITSATIQDIC--------FSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 428 G~t~a~I~sIa--------FSpDg~~Las~S~dGTVhIw~l 460 (838)
+. ...+.+++ |||||+.+++++.+|+++||++
T Consensus 235 ~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 235 LP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 32 22344455 9999999999999999999999
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.24 E-value=2.9e-10 Score=140.79 Aligned_cols=103 Identities=21% Similarity=0.199 Sum_probs=77.1
Q ss_pred CceEE-EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVV-VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~-VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
++.+. +||+.+++.. .+..|...+..++|||||++||+++.++ .|++||+.. | .. ..+.
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~-~v~~~d~~t-------g----------~~-~~~~ 416 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRF-EIMTVDLET-------G----------KP-TVIE 416 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CE-EEEE
T ss_pred CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCC-eEEEEECCC-------C----------ce-EEec
Confidence 45688 8999877654 4458889999999999999999999865 599999964 3 22 2332
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC----------eEEEEecCCCCCccccccC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKG----------TCHVFVLSPFGGDSGFQTL 472 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dG----------TVhIw~l~~~gg~~~~~~H 472 (838)
.+ +...|.+++|||||++|++++.++ +|++|++.... ...+..|
T Consensus 417 ~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~ 470 (1045)
T 1k32_A 417 RS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE 470 (1045)
T ss_dssp EC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS
T ss_pred cC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC
Confidence 33 234688999999999999988755 89999997533 3444444
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.24 E-value=3.1e-10 Score=140.59 Aligned_cols=95 Identities=7% Similarity=0.024 Sum_probs=78.0
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC---------CEEEEEecCCCcccCCCCCCccccCC
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG---------NNINIFRIMPSCMRSGSGNHKYDWNS 417 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG---------t~IrVwdi~p~~~~~~~G~~~~~~~~ 417 (838)
.++.|++||+.+++....+..|..+|.+++|||||++||+++.++ ..|++||+.. |
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------g-------- 462 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-------R-------- 462 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-------T--------
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC-------C--------
Confidence 356899999999998888889999999999999999999988754 4799999853 2
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 418 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
.+..+.. +...+.+++|+|||++|+.++.++...+|+..
T Consensus 463 ---~~~~l~~--~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 463 ---KIFAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ---EEEECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ---cEEEeeC--CCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 3444432 23458889999999999999999999999865
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.22 E-value=7.1e-11 Score=132.91 Aligned_cols=97 Identities=13% Similarity=0.273 Sum_probs=79.5
Q ss_pred cCCCceEEEEECCCC--------c---EEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCc
Q 003221 345 MDNAGIVVVKDFVTR--------A---IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (838)
Q Consensus 345 g~~~G~V~VwDl~s~--------~---~v~~~~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~ 412 (838)
+..+|.|+|||+.+. + .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+.. +
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~-------~--- 182 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTE-------T--- 182 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESS-------S---
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCC-------C---
Confidence 456899999998654 1 25667789999999999998 899999999887 99999964 2
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 413 ~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
..+... .+ +...|++++|+|||++|++++.||+|+||++.
T Consensus 183 -------~~~~~~-~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 183 -------VKVCAT-LP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp -------EEEEEE-EC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred -------cceeec-cC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 233333 23 34579999999999999999999999999987
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.22 E-value=2.7e-10 Score=133.66 Aligned_cols=103 Identities=12% Similarity=0.211 Sum_probs=65.6
Q ss_pred CCceEEEEECCCCcEEEEecc-CCCCeE----EEEECCCCCEEEEE-ecCCC------EEEEEecCCCcccCCCCCCccc
Q 003221 347 NAGIVVVKDFVTRAIISQFKA-HTSPIS----ALCFDPSGTLLVTA-SVYGN------NINIFRIMPSCMRSGSGNHKYD 414 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~a-H~spIs----aLaFSPdGtlLATA-S~dGt------~IrVwdi~p~~~~~~~G~~~~~ 414 (838)
.+..|.+||+.+++....+.. |...+. .++|+|||+.|+.+ +.++. .|.+||+... +.
T Consensus 278 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~------~~---- 347 (723)
T 1xfd_A 278 NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN------SS---- 347 (723)
T ss_dssp CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC------SS----
T ss_pred CeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC------CC----
Confidence 456899999999887766654 444443 78999999988865 43333 3555552111 10
Q ss_pred cCCcceEEEEEecccccccEEE-EEEccCCCEEEEEeCC---CeEEEEecCCCCC
Q 003221 415 WNSSHVHLYKLHRGITSATIQD-ICFSHYSQWIAIVSSK---GTCHVFVLSPFGG 465 (838)
Q Consensus 415 ~~~~~~~l~~L~RG~t~a~I~s-IaFSpDg~~Las~S~d---GTVhIw~l~~~gg 465 (838)
...+..|..|. ..+.. ++|||||++|+..+.+ ++++||+++..++
T Consensus 348 ----~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 348 ----NDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp ----SCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred ----ccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 00022232221 23444 6999999999877666 7899999986553
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.22 E-value=4.2e-11 Score=141.05 Aligned_cols=282 Identities=12% Similarity=0.046 Sum_probs=157.4
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccC---cEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg---~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~ 151 (838)
++++..+.++.+++||+. .++...++..+.. .|..++++|++ ..||+....
T Consensus 27 g~~~~~~~d~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~SpDg-------------~~la~~~~~------------ 80 (719)
T 1z68_A 27 QEYLHQSADNNIVLYNIE-TGQSYTILSNRTMKSVNASNYGLSPDR-------------QFVYLESDY------------ 80 (719)
T ss_dssp SEEEEECTTSCEEEEESS-SCCEEEEECHHHHHTTTCSEEEECTTS-------------SEEEEEEEE------------
T ss_pred CeEEEEcCCCCEEEEEcC-CCcEEEEEccccccccceeeEEECCCC-------------CeEEEEecC------------
Confidence 457777766679999995 5777777776544 48899999863 256654321
Q ss_pred CCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeCCeEEEEECCCCceeeEEee
Q 003221 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 152 ~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~l~tL~t 229 (838)
.+.|. ....++|++||+.+++.+....+...+..++++|+ .||.+.++.|++||+.+++... +..
T Consensus 81 ------~~~~~------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~-l~~ 147 (719)
T 1z68_A 81 ------SKLWR------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ-ITF 147 (719)
T ss_dssp ------EECSS------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCC
T ss_pred ------ceeEE------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE-Eec
Confidence 01110 01136899999999987432334567889999986 8888889999999999887643 221
Q ss_pred cCCcccCCCCcccc------ccccceeEEcc--cEEEEeCCC---ceeecCCCCCCcccCCCCCCCCCCCCCCcceeeee
Q 003221 230 YPVPQLAGQGAVGI------NVGYGPMAVGP--RWLAYASNT---LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (838)
Q Consensus 230 ~p~p~~~~~~~~~~------~~g~g~~Alsp--r~LAys~~~---~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A 298 (838)
.........|.+.- ......++++| ++|||.... ..+|..-.. ..+ . .|
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~-----~~~---~--~~---------- 207 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYY-----GDE---Q--YP---------- 207 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEEC-----CSS---S--SC----------
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeecc-----CCC---C--Cc----------
Confidence 11110000000000 00013577777 788876421 111110000 000 0 00
Q ss_pred hhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE--------EEeccCCC
Q 003221 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--------SQFKAHTS 370 (838)
Q Consensus 299 ~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v--------~~~~aH~s 370 (838)
....+ .+|. ++ .......|.+||+.+++.. ..+.+|..
T Consensus 208 -------------~~~~~---~yp~-----------------~g-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 208 -------------RTINI---PYPK-----------------AG-AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp -------------EEEEE---ECCB-----------------TT-SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred -------------cceee---cCCC-----------------CC-CCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 00000 0010 00 1122457999999987642 22457889
Q ss_pred CeEEEEECCCCCEEEEEecCC---CEEEEEe----cCCCcccCCCCCCccccCCcceEEEE-EecccccccEE-----EE
Q 003221 371 PISALCFDPSGTLLVTASVYG---NNINIFR----IMPSCMRSGSGNHKYDWNSSHVHLYK-LHRGITSATIQ-----DI 437 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dG---t~IrVwd----i~p~~~~~~~G~~~~~~~~~~~~l~~-L~RG~t~a~I~-----sI 437 (838)
.+..++|||||++++++...+ ..|.+|| +.. |. ...+.+ .+.+. ...|. ++
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------g~--------~~~~~~~~~~~~-~~~~~~~~~~~~ 317 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-------WD--------CPKTQEHIEESR-TGWAGGFFVSTP 317 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-------EE--------CCGGGEEEEECS-SSCSSSSSCCCC
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-------Cc--------eEEEEecccccC-CceEccccCCcc
Confidence 999999999999888865432 2377788 532 20 011111 00122 22344 78
Q ss_pred EEccCCCEEEE--EeCCCeEEEEecCCCCC
Q 003221 438 CFSHYSQWIAI--VSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 438 aFSpDg~~Las--~S~dGTVhIw~l~~~gg 465 (838)
+|||||++|+. +..+|..+||.++..++
T Consensus 318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp EECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred EECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 99999996654 55677777776655443
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.22 E-value=4.9e-09 Score=113.67 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=70.2
Q ss_pred CceEEEEECC-CCcE--EEEec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE-
Q 003221 348 AGIVVVKDFV-TRAI--ISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH- 421 (838)
Q Consensus 348 ~G~V~VwDl~-s~~~--v~~~~--aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~- 421 (838)
++.|.+||+. +++. +..+. .|...+..++|+|||++|+.++..+..|.||++.+. .|. ...
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~--------~~~~ 232 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THM--------PVYT 232 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCC--------EEEE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCc--------EEEc
Confidence 4579999998 6654 23443 356678999999999999999886677999987531 121 011
Q ss_pred EEEEe---cccc--cc------cEEEEE-EccCCCEEEEEeCCC------eEEEEecCCCC
Q 003221 422 LYKLH---RGIT--SA------TIQDIC-FSHYSQWIAIVSSKG------TCHVFVLSPFG 464 (838)
Q Consensus 422 l~~L~---RG~t--~a------~I~sIa-FSpDg~~Las~S~dG------TVhIw~l~~~g 464 (838)
...+. .+.. .. .+.+++ |||||++|++++... +|.||+++..+
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g 293 (365)
T 1jof_A 233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence 11221 1111 11 488999 999999998776432 89999997533
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.22 E-value=9.8e-10 Score=114.61 Aligned_cols=210 Identities=9% Similarity=-0.006 Sum_probs=129.8
Q ss_pred CEEEEEECCCCeEEEEEeCCC---cEEEEEeCCC--eEEEEe--CCeEEEEECCCCceeeEEeecC-CcccCCCCccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPR--IVAVGL--ATQIYCFDALTLENKFSVLTYP-VPQLAGQGAVGIN 244 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s---~V~sV~~s~~--iLaV~l--~~~I~IwD~~t~e~l~tL~t~p-~p~~~~~~~~~~~ 244 (838)
++|.+||+.+++.+..+.... .+..++++++ .|+++. +++|++||+.+++.+.++.... .. .+
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------~~-- 81 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------RV-- 81 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------EE--
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------cc--
Confidence 789999999999999998877 6889999875 555544 4589999999998877665311 00 00
Q ss_pred cccceeEEcc--cEEEEeC--------------CCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhcc
Q 003221 245 VGYGPMAVGP--RWLAYAS--------------NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (838)
Q Consensus 245 ~g~g~~Alsp--r~LAys~--------------~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~G 308 (838)
.....+++++ ++|++.. ..+.+|+... +..+..
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-------------------~~~~~~------------ 130 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-------------------LSRRKA------------ 130 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-------------------TEEEEE------------
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-------------------CcEEEE------------
Confidence 0123466765 5666552 2333444210 000000
Q ss_pred ccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEE
Q 003221 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVT 386 (838)
Q Consensus 309 l~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~--spIsaLaFSPdGtlLAT 386 (838)
+. .........++++++.+.+ + ++.|.+||+.+++.+..+..+. .++ +|+|+|+.|+.
T Consensus 131 ----~~-------~~~~~~~~~~s~dg~~l~~----~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~ 190 (337)
T 1pby_B 131 ----FE-------APRQITMLAWARDGSKLYG----L--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWN 190 (337)
T ss_dssp ----EE-------CCSSCCCEEECTTSSCEEE----E--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCC
T ss_pred ----Ee-------CCCCcceeEECCCCCEEEE----e--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEee
Confidence 00 0000111122222332221 1 5789999999999888887654 444 89999998877
Q ss_pred EecCCCE-----------------------EEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 387 ASVYGNN-----------------------INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 387 AS~dGt~-----------------------IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
++..+.. |.+||+.. +. .....+. .....+.+++|+|||
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-------~~---------~~~~~~~--~~~~~~~~~~~s~dg 252 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE---------MAMREVR--IMDVFYFSTAVNPAK 252 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-------CC---------EEEEEEE--ECSSCEEEEEECTTS
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCC-------CC---------ceEeecC--CCCCceeeEEECCCC
Confidence 6655543 57888753 21 1122222 223458899999999
Q ss_pred CEEEEEeCCCeEEEEecCC
Q 003221 444 QWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 444 ~~Las~S~dGTVhIw~l~~ 462 (838)
++|+++ +++|++|++..
T Consensus 253 ~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 253 TRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp SEEEEE--ESEEEEEETTT
T ss_pred CEEEEe--CCeEEEEECCC
Confidence 999988 78999999865
No 159
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.19 E-value=1.5e-09 Score=113.41 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=71.2
Q ss_pred CCceEEEEEC---CCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 347 NAGIVVVKDF---VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 347 ~~G~V~VwDl---~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
.++.|.+||+ ...+.+..+..+ ..+.+++|+|+|++|++++..+..|++||+... |. ...+.
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~------~~--------~~~~~ 168 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD------GH--------LVAQD 168 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT------SC--------EEEEE
T ss_pred CCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC------Cc--------eeeec
Confidence 3678999999 444455555554 458899999999999988833456999999531 21 11222
Q ss_pred --EEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCCC
Q 003221 424 --KLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG 465 (838)
Q Consensus 424 --~L~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~~gg 465 (838)
.+.. .....+.+++|+||+++|++++ .+++++||+++...+
T Consensus 169 ~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 169 PAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp EEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred cccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 2221 1223688999999999886655 889999999976443
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.14 E-value=1.1e-08 Score=109.95 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=60.8
Q ss_pred CceEEEEECCCCcE--EEEeccCCCC---eEEEEECCCCCEEEEEe--------cCCCEEEEEecCCCcccCCCCCCccc
Q 003221 348 AGIVVVKDFVTRAI--ISQFKAHTSP---ISALCFDPSGTLLVTAS--------VYGNNINIFRIMPSCMRSGSGNHKYD 414 (838)
Q Consensus 348 ~G~V~VwDl~s~~~--v~~~~aH~sp---IsaLaFSPdGtlLATAS--------~dGt~IrVwdi~p~~~~~~~G~~~~~ 414 (838)
.+.|.+||+.+++. +..+.++... ...++|+|||+.|+... ..+..|.+||+.. |
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-------~----- 330 (388)
T 3pe7_A 263 DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-------G----- 330 (388)
T ss_dssp CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT-------T-----
T ss_pred cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-------C-----
Confidence 34699999998873 3444442111 11237999999988653 2244699999853 2
Q ss_pred cCCcceEEEEEeccccc---------ccEEEEEEccCCCEEEEEeC-CCeEEEEecCCC
Q 003221 415 WNSSHVHLYKLHRGITS---------ATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF 463 (838)
Q Consensus 415 ~~~~~~~l~~L~RG~t~---------a~I~sIaFSpDg~~Las~S~-dGTVhIw~l~~~ 463 (838)
.+..+..+... ..+.+++|||||++|+.++. +|..+||.++..
T Consensus 331 ------~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 331 ------TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp ------EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ------ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 33444332210 03678899999999987765 678889887653
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.12 E-value=5.7e-10 Score=128.40 Aligned_cols=99 Identities=9% Similarity=0.016 Sum_probs=69.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC---CEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG---t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+.|||+.+++.......+. .+++|||||++||+++.++ ..|++||+.. | .+..|.
T Consensus 133 ~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-------g-----------~~~~l~ 191 (582)
T 3o4h_A 133 RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-------G-----------GLRVFD 191 (582)
T ss_dssp CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-------C-----------CCEEEC
T ss_pred CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-------C-----------CceEee
Confidence 34499998887554444333 8899999999999888751 4589999853 3 122443
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC--eEEEEecCCCCCccccccC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKG--TCHVFVLSPFGGDSGFQTL 472 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dG--TVhIw~l~~~gg~~~~~~H 472 (838)
+ +...+.+++|||||++|+++..++ +|++|+++..... .+..|
T Consensus 192 -~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~ 236 (582)
T 3o4h_A 192 -S-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP 236 (582)
T ss_dssp -C-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS
T ss_pred -c-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC
Confidence 2 234689999999999999888888 7888888754333 33444
No 162
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.07 E-value=3.4e-07 Score=94.73 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=69.6
Q ss_pred CceEEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 348 AGIVVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH--~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
++.|.+||.. ++.+..+..+ ...+..|+|+|+|+++++...++..|++||.. | ..+..+
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--------g----------~~~~~~ 244 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------G----------QLISAL 244 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------S----------CEEEEE
T ss_pred CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--------C----------CEEEEE
Confidence 5679999974 5566666543 46789999999999999887754369999853 3 345555
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
..+.....+.+|+|+|||+.+++ +.+++|+||++..
T Consensus 245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 43332335889999999987666 6789999999864
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.07 E-value=1.3e-08 Score=106.78 Aligned_cols=56 Identities=16% Similarity=0.066 Sum_probs=45.7
Q ss_pred CEEEEEECCCCeEEEEEeCCC--cEEEEEeCCC--eEEEEe--CCeEEEEECCCCceeeEEe
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSPR--IVAVGL--ATQIYCFDALTLENKFSVL 228 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s--~V~sV~~s~~--iLaV~l--~~~I~IwD~~t~e~l~tL~ 228 (838)
++|.+||+.+++.+..+.... .+..++++++ .++++. +++|++||+.+++....+.
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 789999999999999998776 7888999875 455443 5689999999998776665
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.06 E-value=2.3e-09 Score=127.80 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=76.4
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEEeeeccCc---EEE--EEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCC
Q 003221 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGP---VSF--LQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (838)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~g~v~ells~hdg~---V~~--l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~ 149 (838)
+++|+.+ ++.+++||+. +++...++..|... +.+ +.++|+. ..|++...+.+
T Consensus 28 g~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-------------~~l~~~~~~~~-------- 84 (740)
T 4a5s_A 28 HEYLYKQ-ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDG-------------QFILLEYNYVK-------- 84 (740)
T ss_dssp SEEEEEE-TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTS-------------SEEEEEEEEEE--------
T ss_pred CcEEEEc-CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCC-------------CEEEEEECCee--------
Confidence 5788887 7779999995 57777888877643 323 6777753 25665442211
Q ss_pred CCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEeCCeEEEEECCCCce
Q 003221 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGLATQIYCFDALTLEN 223 (838)
Q Consensus 150 ~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~ 223 (838)
+ |. +.....+.+||+.+++..........+..++++|+ .||.+.++.|++||+.+++.
T Consensus 85 ------~----~r------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 85 ------Q----WR------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS 144 (740)
T ss_dssp ------C----SS------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred ------e----EE------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Confidence 0 00 01125688999999987543345678999999986 88888899999999998874
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.97 E-value=2.4e-09 Score=126.10 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=41.0
Q ss_pred CEEEEEECCCCeEEEEEeCCC----cEEEEEeCCC--eEEEEeC----------CeEEEEECCCCce
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS----SVCMVRCSPR--IVAVGLA----------TQIYCFDALTLEN 223 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s----~V~sV~~s~~--iLaV~l~----------~~I~IwD~~t~e~ 223 (838)
++|++||+.+++....+..+. .|.+++++++ .|+.+.. .+|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 679999999999877776543 3889999986 6776654 6899999999875
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.94 E-value=7.2e-07 Score=97.44 Aligned_cols=95 Identities=8% Similarity=0.078 Sum_probs=65.7
Q ss_pred CCceEEEEECCCCc--EEEEecc------CC----CCeEEEEECCCCCEEEEEec-C---------CCEEEEEecCCCcc
Q 003221 347 NAGIVVVKDFVTRA--IISQFKA------HT----SPISALCFDPSGTLLVTASV-Y---------GNNINIFRIMPSCM 404 (838)
Q Consensus 347 ~~G~V~VwDl~s~~--~v~~~~a------H~----spIsaLaFSPdGtlLATAS~-d---------Gt~IrVwdi~p~~~ 404 (838)
.+|.|.++|+...+ .+..+.. +. .....++|+|+|..|..+.. + +..|.|||+..
T Consensus 219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--- 295 (361)
T 2oiz_A 219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--- 295 (361)
T ss_dssp TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT---
T ss_pred CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC---
Confidence 46789999997653 2222211 11 11123789999887776643 2 23699999864
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 405 ~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
+ +.+.++.-|. +.+|+|+|||++|++++. ++|.|||+...
T Consensus 296 ----~----------~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 296 ----K----------QRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ----T----------EEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ----C----------cEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 2 5666665442 789999999999999887 99999998765
No 167
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.87 E-value=3.5e-07 Score=96.77 Aligned_cols=96 Identities=11% Similarity=0.192 Sum_probs=68.8
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsa-LaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
...|.+|| +++....+..|...+.. ++|+ || ++++++.+| .++|| +. . | .. ..+.
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~-~~~l~-~~-~------g----------~~-~~~~ 298 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG-SVNLY-IW-D------G----------EI-KPIA 298 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT-EEEEE-EE-S------S----------SE-EEEE
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC-cEEEE-Ec-C------C----------ce-EEEe
Confidence 46789999 66665556677888986 9999 99 999999866 58999 84 2 3 12 3333
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeE-EEEecCCCCCccccccCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTC-HVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTV-hIw~l~~~gg~~~~~~H~ 473 (838)
.+ ...|.+++|+| +++++++.+++. +||.++ +....+..|+
T Consensus 299 ~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n 340 (347)
T 2gop_A 299 KG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYN 340 (347)
T ss_dssp CS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTT
T ss_pred cC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEecccc
Confidence 33 34699999999 777777777775 899887 4444455554
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.84 E-value=1.5e-07 Score=101.00 Aligned_cols=98 Identities=7% Similarity=-0.028 Sum_probs=67.4
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEecCC-----CEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSP-dGtlLATAS~dG-----t~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
..+.|.+||+.+++. ..+..|...+..++|+| ||++||.++..+ ..|.++|+.. +
T Consensus 166 ~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~----------- 226 (388)
T 3pe7_A 166 PCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-------T----------- 226 (388)
T ss_dssp CCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-------C-----------
T ss_pred CcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-------C-----------
Confidence 457899999998864 45556777899999999 999999888642 1366666532 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCC-C----eEEEEecCCC
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSK-G----TCHVFVLSPF 463 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d-G----TVhIw~l~~~ 463 (838)
.+..+..+.....+..++|||||++|+..+.+ + +|++|++...
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 227 NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 22233332222357889999999988776553 2 3888888653
No 169
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.83 E-value=1.3e-06 Score=93.78 Aligned_cols=231 Identities=10% Similarity=-0.042 Sum_probs=140.2
Q ss_pred CeEEEEEec-CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~-~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
++++++... +.+.+||.. ++++...+.. ......+.+.|+. .|.+...
T Consensus 54 ~~lyv~~~~~~~v~viD~~-t~~~~~~i~~-~~~p~~i~~~~~g--------------~lyv~~~--------------- 102 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDIN-TFKEVGRITG-FTSPRYIHFLSDE--------------KAYVTQI--------------- 102 (328)
T ss_dssp TEEEEEEGGGTEEEEEETT-TCCEEEEEEC-CSSEEEEEEEETT--------------EEEEEEB---------------
T ss_pred CEEEEEEcCCCEEEEEECc-ccEEEEEcCC-CCCCcEEEEeCCC--------------eEEEEEC---------------
Confidence 467777765 459999995 4556554432 3456677776531 2333221
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEeCCCeEEEEe---CCeEEEEECCCCcee
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSPRIVAVGL---ATQIYCFDALTLENK 224 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s------~V~sV~~s~~iLaV~l---~~~I~IwD~~t~e~l 224 (838)
..++|.+||.++++.+..+.... ....+.+..+.|.|+. ++.|.+||+.+++.+
T Consensus 103 -----------------~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 103 -----------------WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp -----------------SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred -----------------CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 02689999999999998887655 5556666666555553 678999999999877
Q ss_pred eEEeecCCcccCCCCccccccccceeEEcc-cEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhh
Q 003221 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (838)
Q Consensus 225 ~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp-r~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k 303 (838)
.++.....| ..+++.+ .-|.+... |.
T Consensus 166 ~~i~~g~~p--------------~~i~~~~dG~l~v~~~-------~~-------------------------------- 192 (328)
T 3dsm_A 166 DELTIGIQP--------------TSLVMDKYNKMWTITD-------GG-------------------------------- 192 (328)
T ss_dssp EEEECSSCB--------------CCCEECTTSEEEEEBC-------CB--------------------------------
T ss_pred EEEEcCCCc--------------cceEEcCCCCEEEEEC-------CC--------------------------------
Confidence 776542222 1233322 00111000 00
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCC
Q 003221 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGT 382 (838)
Q Consensus 304 ~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH-~spIsaLaFSPdGt 382 (838)
|- ..+ .....+.|.++|..++++...+... ......|+|+|||+
T Consensus 193 ------------~~---------------------~~~--~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 193 ------------YE---------------------GSP--YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD 237 (328)
T ss_dssp ------------CT---------------------TCS--SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred ------------cc---------------------CCc--cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence 00 000 0112578999999999887777643 23678999999999
Q ss_pred EEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEE----eCCCeEEE
Q 003221 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIV----SSKGTCHV 457 (838)
Q Consensus 383 lLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg-~~Las~----S~dGTVhI 457 (838)
+|..+.. .|.+||+.. +.. .. ... +..+ ......|+++|++ +..++. ..+++|.+
T Consensus 238 ~lyv~~~---~v~~~d~~t-------~~~----~~--~~~--~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v 297 (328)
T 3dsm_A 238 TLYWINN---DIWRMPVEA-------DRV----PV--RPF--LEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297 (328)
T ss_dssp EEEEESS---SEEEEETTC-------SSC----CS--SCS--BCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred EEEEEcc---EEEEEECCC-------Cce----ee--eee--ecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence 9988764 488999854 210 00 000 0011 2357899999954 444554 57889999
Q ss_pred EecC
Q 003221 458 FVLS 461 (838)
Q Consensus 458 w~l~ 461 (838)
|+.+
T Consensus 298 ~d~~ 301 (328)
T 3dsm_A 298 YSPQ 301 (328)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 9976
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.80 E-value=2.1e-06 Score=91.81 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=71.8
Q ss_pred CCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEec------CCCEEEEEecCCCcccCCCCCCccccCCc
Q 003221 347 NAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASV------YGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~--aH~spIsaLaFSPdGtlLATAS~------dGt~IrVwdi~p~~~~~~~G~~~~~~~~~ 418 (838)
.++.|++||..+++.+..+. .+...+.+++|+| |.++++.+. .+..|++|+... |
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-------g--------- 278 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-------G--------- 278 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-------C---------
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-------C---------
Confidence 35789999999888888884 5667889999999 544444332 123589999753 3
Q ss_pred ceEEEEEecc-cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 419 HVHLYKLHRG-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 419 ~~~l~~L~RG-~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
..+..+..+ ..-..+.+|+|+|||+.+++.+.+++|++|+++..
T Consensus 279 -~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 279 -EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp -CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred -eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 355555311 11235899999999988888899999999998653
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.77 E-value=4.5e-07 Score=105.41 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=67.7
Q ss_pred ceEEEEECC-CC---cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEE
Q 003221 349 GIVVVKDFV-TR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (838)
Q Consensus 349 G~V~VwDl~-s~---~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~ 424 (838)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|+ ++||.+... .| .+..
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~-----~~-----------~~~~ 279 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPA-----TG-----------AATQ 279 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTT-----TC-----------CEEE
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECC-----CC-----------ceee
Confidence 579999998 56 444444556789999999999998888887664 455555321 02 1222
Q ss_pred Eecccccc-------cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 425 LHRGITSA-------TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 425 L~RG~t~a-------~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
+..+.... .+.+++|+||++++++++. ++++||.++..++
T Consensus 280 l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 280 LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 22221111 1567999999999999999 9999998765443
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.76 E-value=1.6e-07 Score=100.55 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=62.9
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEec---------------CCCEEEEEecCCCcccCCCCCCc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASV---------------YGNNINIFRIMPSCMRSGSGNHK 412 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSP-dGtlLATAS~---------------dGt~IrVwdi~p~~~~~~~G~~~ 412 (838)
+.|.+||+.+++...... .. ... ++|+| ||++|++++. .+..|.+||+.. |
T Consensus 264 ~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-------~--- 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-------K--- 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-------T---
T ss_pred ceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-------C---
Confidence 569999998876433221 11 233 89999 9999998652 235689999853 2
Q ss_pred cccCCcceEEEEEeccccc---------ccEEEEEEccCCCEEEEEeC-CCeEEEEecCCCCCcccc
Q 003221 413 YDWNSSHVHLYKLHRGITS---------ATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGDSGF 469 (838)
Q Consensus 413 ~~~~~~~~~l~~L~RG~t~---------a~I~sIaFSpDg~~Las~S~-dGTVhIw~l~~~gg~~~~ 469 (838)
.+..+..+... ..+.+++|+|||++|+.++. +++..||.++..++...+
T Consensus 331 --------~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 331 --------SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL 389 (396)
T ss_dssp --------BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred --------ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence 11222221110 02566899999999988775 577888888766655544
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.74 E-value=7.6e-08 Score=114.73 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=70.1
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH- 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~- 426 (838)
.|.+.|||+.+++. ..+..|...+...+|||||+.||.++. ..|.+|++.. |. ...+.
T Consensus 91 ~~~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~-------~~-----------~~~lt~ 149 (740)
T 4a5s_A 91 TASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPN-------LP-----------SYRITW 149 (740)
T ss_dssp EEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTT-------SC-----------CEECCS
T ss_pred ceEEEEEECCCCcE-EEcccCCCcceeeEECCCCCEEEEEEC--CeEEEEECCC-------Cc-----------eEEEcC
Confidence 46799999999874 457788889999999999999999964 4699999853 21 11111
Q ss_pred ccccc----------------ccEEEEEEccCCCEEEEEeCCCe-EEEEecCCCCC
Q 003221 427 RGITS----------------ATIQDICFSHYSQWIAIVSSKGT-CHVFVLSPFGG 465 (838)
Q Consensus 427 RG~t~----------------a~I~sIaFSpDg~~Las~S~dGT-VhIw~l~~~gg 465 (838)
.|... .....++|||||++||.++.|.+ |.+|.+..++.
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~ 205 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC
Confidence 11111 01134899999999999987776 88888865443
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.71 E-value=6.5e-06 Score=85.75 Aligned_cols=90 Identities=11% Similarity=0.140 Sum_probs=61.2
Q ss_pred CceEEEEECC-CCcE---EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 348 AGIVVVKDFV-TRAI---ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 348 ~G~V~VwDl~-s~~~---v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
++.|.+||+. +++. ...+..+...+..|+|+++|+++++. .+ .|.+|+.. | ..+.
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~-~v~~~~~~--------g----------~~~~ 250 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD-GVHVLTPD--------G----------DELG 250 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT-EEEEECTT--------S----------CEEE
T ss_pred CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC-eEEEECCC--------C----------CEEE
Confidence 4678888876 4443 23344455667889999999988877 34 58999863 3 3455
Q ss_pred EEecccccccEEEEEE-ccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 424 KLHRGITSATIQDICF-SHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaF-SpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
.+... .. +.+++| +||+++|.+++.++ ||.+.+..
T Consensus 251 ~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~~ 286 (296)
T 3e5z_A 251 RVLTP--QT-TSNLCFGGPEGRTLYMTVSTE---FWSIETNV 286 (296)
T ss_dssp EEECS--SC-CCEEEEESTTSCEEEEEETTE---EEEEECSC
T ss_pred EEECC--CC-ceeEEEECCCCCEEEEEcCCe---EEEEEccc
Confidence 55422 22 789999 69999999999874 55555443
No 175
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.68 E-value=2.9e-06 Score=91.09 Aligned_cols=178 Identities=6% Similarity=-0.047 Sum_probs=117.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCC-CeEEEEe--CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccce
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~-~iLaV~l--~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~ 249 (838)
++|.+||.++++.+.++........|++++ ..|.++. ++.|.+||+.+++...++...... +.
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------------~~ 129 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD--------------ME 129 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------------TT
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------------cc
Confidence 689999999999999997667788888843 3555554 779999999999877666532210 00
Q ss_pred eEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCc
Q 003221 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (838)
Q Consensus 250 ~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~ 329 (838)
. -.|.-|++.+..+ |..
T Consensus 130 ~-~~p~~i~~~~~~l---------------------------------------------------yv~----------- 146 (328)
T 3dsm_A 130 S-GSTEQMVQYGKYV---------------------------------------------------YVN----------- 146 (328)
T ss_dssp T-CBCCCEEEETTEE---------------------------------------------------EEE-----------
T ss_pred C-CCcceEEEECCEE---------------------------------------------------EEE-----------
Confidence 0 0011222211100 000
Q ss_pred cCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecC---------CCEEEEEecC
Q 003221 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNINIFRIM 400 (838)
Q Consensus 330 s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~d---------Gt~IrVwdi~ 400 (838)
....++.|.++|..+++.+..+..... ...++|+|+|++++++..+ ...|.+||..
T Consensus 147 --------------~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 147 --------------CWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp --------------ECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred --------------cCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 001256899999999998888876444 4689999999988887653 1468899975
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 401 p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
. + +.+..+..+. ......|+|+||+++|.++.. +|.+|++..
T Consensus 212 t-------~----------~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 212 T-------F----------TVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp T-------T----------EEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred C-------C----------eEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence 3 2 2333333211 124789999999999988765 888888764
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.66 E-value=3.7e-05 Score=80.97 Aligned_cols=105 Identities=7% Similarity=0.040 Sum_probs=65.2
Q ss_pred CeEEEEEec-CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~-~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+++++++.. +++.+||.+ .+.+..+...+...+..+.+.|+. .+++ +..++.
T Consensus 56 g~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~dg-------------~l~v-~~~~~~------------ 108 (333)
T 2dg1_A 56 GQLFLLDVFEGNIFKINPE-TKEIKRPFVSHKANPAAIKIHKDG-------------RLFV-CYLGDF------------ 108 (333)
T ss_dssp SCEEEEETTTCEEEEECTT-TCCEEEEEECSSSSEEEEEECTTS-------------CEEE-EECTTS------------
T ss_pred CCEEEEECCCCEEEEEeCC-CCcEEEEeeCCCCCcceEEECCCC-------------cEEE-EeCCCC------------
Confidence 567777765 469999985 466665554456678888888642 2443 221100
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEeCCC--eEEEEeC-------CeEEEEECCCC
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSPR--IVAVGLA-------TQIYCFDALTL 221 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~---f~s~V~sV~~s~~--iLaV~l~-------~~I~IwD~~t~ 221 (838)
...+.|.+||..+++....+. ....+.++.++++ ++++... ..|+.||..++
T Consensus 109 ----------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 109 ----------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp ----------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred ----------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC
Confidence 012579999998887654443 2246899999875 4444432 46888887665
Q ss_pred c
Q 003221 222 E 222 (838)
Q Consensus 222 e 222 (838)
+
T Consensus 173 ~ 173 (333)
T 2dg1_A 173 T 173 (333)
T ss_dssp C
T ss_pred E
Confidence 4
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.59 E-value=1.2e-06 Score=93.66 Aligned_cols=97 Identities=8% Similarity=-0.049 Sum_probs=67.6
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEecCC-----CEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSP-dGtlLATAS~dG-----t~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
....|.+||+.+++..... .+...+..++|+| +|+.|+.++.++ ..|.+||+.. +
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~----------- 226 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-------S----------- 226 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-------C-----------
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-------C-----------
Confidence 4568999999988754433 5777899999999 899888877533 2477777632 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCC-----CeEEEEecCC
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSK-----GTCHVFVLSP 462 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d-----GTVhIw~l~~ 462 (838)
.+..+..+.....+..++|||||++|+.++.+ ++|++|++..
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 227 NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 12222221112358889999999998888665 4599998864
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.56 E-value=4.7e-05 Score=80.27 Aligned_cols=231 Identities=9% Similarity=-0.036 Sum_probs=148.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEEeeecc-CcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCC
Q 003221 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (838)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~g~v~ells~hd-g~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~ 151 (838)
.+++|++|..++ +++||.+ +|++.-.+..++ ..+..+.++|+. .+|+ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~-tG~~~w~~~~~~~~~~~~~~~~pdG-------------~ilv--s~------------- 54 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD-TKEIVWEYPLEKGWECNSVAATKAG-------------EILF--SY------------- 54 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT-TTEEEEEEECCTTCCCCEEEECTTS-------------CEEE--EC-------------
T ss_pred CCcEEEeeCCCCEEEEEECC-CCeEEEEeCCCccCCCcCeEECCCC-------------CEEE--eC-------------
Confidence 467888887765 8999984 576666666555 367888888753 2443 32
Q ss_pred CCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEeCCC--eEEEEe--CCeEEEEECCCCceee
Q 003221 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSPR--IVAVGL--ATQIYCFDALTLENKF 225 (838)
Q Consensus 152 ~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~--s~V~sV~~s~~--iLaV~l--~~~I~IwD~~t~e~l~ 225 (838)
.+.|..||. +|+.+..++.. ..+.++.+.++ +|++.. ..+|+.+|. +++.++
T Consensus 55 --------------------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~ 112 (276)
T 3no2_A 55 --------------------SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS 112 (276)
T ss_dssp --------------------BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred --------------------CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence 156999999 89999999875 47888888764 666544 357888886 677776
Q ss_pred EEeecCCcccCCCCccccccccceeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhh
Q 003221 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (838)
Q Consensus 226 tL~t~p~p~~~~~~~~~~~~g~g~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~l 305 (838)
++.....- .+... .++.++... .+.-++
T Consensus 113 ~~~~~~~~-------------~~~~~-~~~~v~~~~---------------------------~G~~lv----------- 140 (276)
T 3no2_A 113 KTEFETGI-------------ERPHA-QFRQINKNK---------------------------KGNYLV----------- 140 (276)
T ss_dssp EEEECCSC-------------SSGGG-SCSCCEECT---------------------------TSCEEE-----------
T ss_pred EEeccCCC-------------Ccccc-cccCceECC---------------------------CCCEEE-----------
Confidence 65421100 00000 001111100 011000
Q ss_pred hccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003221 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (838)
Q Consensus 306 a~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLA 385 (838)
....++.|.+||.. ++.+.++..+. ...++.+.++|.+|+
T Consensus 141 --------------------------------------~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v 180 (276)
T 3no2_A 141 --------------------------------------PLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLV 180 (276)
T ss_dssp --------------------------------------EETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred --------------------------------------EecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEE
Confidence 12346889999998 99999988764 445678899999999
Q ss_pred EEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccCCCEEEEEeCC--------C
Q 003221 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHYSQWIAIVSSK--------G 453 (838)
Q Consensus 386 TAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~----t~a~I~sIaFSpDg~~Las~S~d--------G 453 (838)
+++. +..|..||..+ | +.+.++.+.. .-..+..++..+||..+++.+.- +
T Consensus 181 ~~~~-~~~v~~~d~~t-------G----------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~ 242 (276)
T 3no2_A 181 ACGD-AHCFVQLNLES-------N----------RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK 242 (276)
T ss_dssp ECBT-TSEEEEECTTT-------C----------CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred EeCC-CCeEEEEeCcC-------C----------cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence 8877 44588888743 4 4677775421 12348899999999988887421 3
Q ss_pred eEEEEecCCCCC
Q 003221 454 TCHVFVLSPFGG 465 (838)
Q Consensus 454 TVhIw~l~~~gg 465 (838)
..+++.+++.|.
T Consensus 243 ~~~~~~~~~~g~ 254 (276)
T 3no2_A 243 HPQLVEIDSEGK 254 (276)
T ss_dssp CCSEEEECTTSB
T ss_pred CceEEEECCCCC
Confidence 458899877553
No 179
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.54 E-value=5.5e-05 Score=78.44 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=64.8
Q ss_pred CceEEEEECC-CCc-----EEEEeccCC-CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 348 AGIVVVKDFV-TRA-----IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 348 ~G~V~VwDl~-s~~-----~v~~~~aH~-spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
++.|.+||+. +++ ....+..+. ..+..|+++++|.++++...++ .|.+||... | .
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~-------g----------~ 258 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDG-------G----------Q 258 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTC-------B----------S
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCC-------C----------c
Confidence 4567777765 333 334455554 5678899999999998877644 588998742 2 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEecCCCC
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~-S~dGTVhIw~l~~~g 464 (838)
.+..+.. ....+.+++|++|+++|.++ ..++.|.+|++...|
T Consensus 259 ~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 259 PKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp CSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 2222221 12468999999999966555 456889999987644
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.50 E-value=3.7e-06 Score=97.70 Aligned_cols=96 Identities=14% Similarity=0.002 Sum_probs=58.7
Q ss_pred eEEEEECCCCcEEEEeccCCCC--------eEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE
Q 003221 350 IVVVKDFVTRAIISQFKAHTSP--------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~sp--------IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~ 421 (838)
.|.+||+.+++....+..|... +..++|+|+|+++++++. |+ ++||.+... + ..
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~------~----------~~ 327 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE------S----------GE 327 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT------T----------TE
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC------C----------Cc
Confidence 5777777666654433333322 567999999999999998 76 889965321 1 13
Q ss_pred EEEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 422 LYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 422 l~~L~RG~t~a~I~sI-aFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
+..|..+ ...+.++ +++.+.-++++++.+....||.++..++
T Consensus 328 ~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 328 LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 4454322 2346666 5544444455566676677777655444
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.47 E-value=2.3e-05 Score=80.79 Aligned_cols=92 Identities=11% Similarity=0.202 Sum_probs=66.8
Q ss_pred CceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 348 AGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~--aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
++.|.+||.. ++.+..+. .+...+..|+|+|+|+++++.+. +..|++||.. | ..+..+
T Consensus 141 ~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~--------g----------~~~~~~ 200 (286)
T 1q7f_A 141 VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-AHCVKVFNYE--------G----------QYLRQI 200 (286)
T ss_dssp TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-GTEEEEEETT--------C----------CEEEEE
T ss_pred CCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-CCEEEEEcCC--------C----------CEEEEE
Confidence 4678888864 55555554 45567899999999998887766 4459999973 3 244444
Q ss_pred ec-ccccccEEEEEEccCCCEEEEEeCCC-eEEEEec
Q 003221 426 HR-GITSATIQDICFSHYSQWIAIVSSKG-TCHVFVL 460 (838)
Q Consensus 426 ~R-G~t~a~I~sIaFSpDg~~Las~S~dG-TVhIw~l 460 (838)
.. |. ...+..|+|++||+.+++...++ +|.+|+.
T Consensus 201 ~~~g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 201 GGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp SCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred ccCCc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 21 21 13588999999999888888876 9999984
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.46 E-value=0.00018 Score=84.11 Aligned_cols=234 Identities=14% Similarity=0.117 Sum_probs=140.9
Q ss_pred CeEEEEEecC-cEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCCCCCC
Q 003221 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (838)
Q Consensus 75 ~~vL~lG~~~-G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~~~~~ 153 (838)
+.++++...+ .+.|||.+ ++++...+... ..+..+.+.|+. .+|.+ +++
T Consensus 167 ~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g-~~p~~v~~SpDG-------------r~lyv-~~~-------------- 216 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGS-TYEIKTVLDTG-YAVHISRLSASG-------------RYLFV-IGR-------------- 216 (567)
T ss_dssp GEEEEEETTTTEEEEEETT-TCCEEEEEECS-SCEEEEEECTTS-------------CEEEE-EET--------------
T ss_pred ceEEEEeCCCCeEEEEECC-CCeEEEEEeCC-CCccceEECCCC-------------CEEEE-EcC--------------
Confidence 3455555444 49999995 45565555432 246688888753 24443 321
Q ss_pred CCcccCccCCCCCCCCCCCCEEEEEECC--CCeEEEEEeCCCcEEEEEeC----CC--eEEEEe--CCeEEEEECCCCce
Q 003221 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHCYEHVLRFRSSVCMVRCS----PR--IVAVGL--ATQIYCFDALTLEN 223 (838)
Q Consensus 154 ~~~~~gs~d~~~~~~~~~p~tV~IWDl~--tg~~V~tL~f~s~V~sV~~s----~~--iLaV~l--~~~I~IwD~~t~e~ 223 (838)
.+.|.+||+. +++.+.++........++++ ++ +|.|+. .++|.+||..|++.
T Consensus 217 ------------------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~ 278 (567)
T 1qks_A 217 ------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP 278 (567)
T ss_dssp ------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred ------------------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence 2579999996 89999999877778899998 34 555544 57899999999998
Q ss_pred eeEEeecCCcccCCCCccccccccceeEEccc--EEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhh
Q 003221 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPR--WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (838)
Q Consensus 224 l~tL~t~p~p~~~~~~~~~~~~g~g~~Alspr--~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds 301 (838)
+.++.+...+... ++ +. -.+| .|+.+... ..++.
T Consensus 279 ~~~i~~~~~~~~~-~~-------~~---p~~rva~i~~s~~~---------------------------~~~vv------ 314 (567)
T 1qks_A 279 KKIQSTRGMTYDE-QE-------YH---PEPRVAAILASHYR---------------------------PEFIV------ 314 (567)
T ss_dssp EEEEECCEECTTT-CC-------EE---SCCCEEEEEECSSS---------------------------SEEEE------
T ss_pred EEEEecccccccc-cc-------cc---CCCceEEEEEcCCC---------------------------CEEEE------
Confidence 8877642211000 00 00 0001 01111100 00000
Q ss_pred hhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE--EEEeccCCCCeEEEEECC
Q 003221 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDP 379 (838)
Q Consensus 302 ~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~--v~~~~aH~spIsaLaFSP 379 (838)
.....|.|.++|....+. +..+. .......+.|+|
T Consensus 315 ------------------------------------------~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p 351 (567)
T 1qks_A 315 ------------------------------------------NVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG 351 (567)
T ss_dssp ------------------------------------------EETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT
T ss_pred ------------------------------------------EecCCCeEEEEecCCCccceeeeee-ccccccCceECC
Confidence 113468899999876542 23332 234466789999
Q ss_pred CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec-ccccc---cEEEEEEccCCCEEEEEe--CCC
Q 003221 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITSA---TIQDICFSHYSQWIAIVS--SKG 453 (838)
Q Consensus 380 dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R-G~t~a---~I~sIaFSpDg~~Las~S--~dG 453 (838)
||++|.++......|.|+|+.. + +.+..+.- |.... .+. + |.||+..+.+.+ .++
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t-------~----------kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~ 412 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKE-------G----------KLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDD 412 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTT-------T----------EEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSS
T ss_pred CCCEEEEEeCCCCeEEEEECCC-------C----------cEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCC
Confidence 9999988887677899999964 2 33434433 32211 122 2 688866665544 468
Q ss_pred eEEEEecCC
Q 003221 454 TCHVFVLSP 462 (838)
Q Consensus 454 TVhIw~l~~ 462 (838)
+|.|++..+
T Consensus 413 ~Vsvid~~~ 421 (567)
T 1qks_A 413 SVALIGTDP 421 (567)
T ss_dssp EEEEEECCT
T ss_pred eEEEecCCC
Confidence 999999887
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.46 E-value=5.7e-05 Score=89.36 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=67.0
Q ss_pred CceEEEEECCCCc--EEEEeccCCC--CeEEEEECCCCCEEEEEecCCCE-EEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 348 AGIVVVKDFVTRA--IISQFKAHTS--PISALCFDPSGTLLVTASVYGNN-INIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 348 ~G~V~VwDl~s~~--~v~~~~aH~s--pIsaLaFSPdGtlLATAS~dGt~-IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
.+.|.+||+.+++ ....+..|.. .|..++|++++.+++++..+|.. |.+|++.. | ..+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-------g----------~~~ 372 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-------G----------ALL 372 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-------C----------CEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-------C----------CEE
Confidence 4679999998764 2345555644 68889999889999999987752 55666532 3 244
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeC----CCeEEEEecCCC
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSPF 463 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~----dGTVhIw~l~~~ 463 (838)
.++... ...|.+++|+||++.|+.+.. .+++++|++...
T Consensus 373 ~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 373 KIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 555322 456899999999987764432 368999998653
No 184
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.40 E-value=9.9e-06 Score=90.53 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=59.6
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE--EE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH--LY 423 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~--l~ 423 (838)
..+|.|.+||+.++.... +...|+|++|||+| ++.+..+|+ |++|+... + .. ..
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~-------~----------~~~~k~ 198 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRN-------G----------EMEKQF 198 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEET-------T----------EEEEEE
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCC-------c----------cccccc
Confidence 458999999999877543 45689999999999 667778776 99997632 1 11 33
Q ss_pred EEec----c---cccccEEEEEEccCCCEEEEEeC
Q 003221 424 KLHR----G---ITSATIQDICFSHYSQWIAIVSS 451 (838)
Q Consensus 424 ~L~R----G---~t~a~I~sIaFSpDg~~Las~S~ 451 (838)
++-+ + .+...|.+|.|.++++||++=+.
T Consensus 199 ~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 199 EFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred eecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 3411 1 12457999999999999988443
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.39 E-value=4.5e-05 Score=89.11 Aligned_cols=179 Identities=9% Similarity=-0.026 Sum_probs=122.1
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEe-CCeEEEEECC--CCceeeEEeecCCcccCCCCccccccc
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL-ATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVG 246 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l-~~~I~IwD~~--t~e~l~tL~t~p~p~~~~~~~~~~~~g 246 (838)
.++|.+||..+++.+.++.....+..+.++++ +|.|+. ++.|.+||+. +++.+.++.....
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-------------- 241 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-------------- 241 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE--------------
T ss_pred CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC--------------
Confidence 37899999999999999998888889999875 555544 5689999996 7776665543211
Q ss_pred cceeEEcccEEEEe----CCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCC
Q 003221 247 YGPMAVGPRWLAYA----SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (838)
Q Consensus 247 ~g~~Alspr~LAys----~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p 322 (838)
|+.|+++ ++...+ ++
T Consensus 242 -------P~~ia~s~~~~pDGk~l--------------------------~v---------------------------- 260 (567)
T 1qks_A 242 -------ARSIETSKMEGWEDKYA--------------------------IA---------------------------- 260 (567)
T ss_dssp -------EEEEEECCSTTCTTTEE--------------------------EE----------------------------
T ss_pred -------CceeEEccccCCCCCEE--------------------------EE----------------------------
Confidence 2445554 121000 00
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc----------CCC-CeEEEEECCCCCEEEEEecCC
Q 003221 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----------HTS-PISALCFDPSGTLLVTASVYG 391 (838)
Q Consensus 323 ~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~a----------H~s-pIsaLaFSPdGtlLATAS~dG 391 (838)
....+++|.|+|..+++.+..+.. |.. .+.++.+++++..++..-.+.
T Consensus 261 ---------------------~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 261 ---------------------GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp ---------------------EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred ---------------------EEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 012357899999999988877753 223 588999999987766666666
Q ss_pred CEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCC
Q 003221 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (838)
Q Consensus 392 t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~~g 464 (838)
..|.++|..+. ....+.++..| ....++.|+||+++|.++. .+++|.|+|+....
T Consensus 320 g~v~~vd~~~~---------------~~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 320 GKILLVDYTDL---------------NNLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp TEEEEEETTCS---------------SEEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CeEEEEecCCC---------------ccceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 66889987531 00122233222 2467899999999987655 57899999998654
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.38 E-value=0.00021 Score=75.12 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=61.2
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE-E-E
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY-K-L 425 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~-~-L 425 (838)
.+.|..+|..+++.. .+..+...+..++|+|+|+.|..+...+..|.+||+... |. ....+. . +
T Consensus 161 ~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~------g~-------~~~~~~~~~~ 226 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD------GV-------TIQPFGATIP 226 (333)
T ss_dssp CEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SS-------SEEEEEEEEE
T ss_pred CceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC------Cc-------CcccccceEE
Confidence 355677776655433 233334457899999999866555443456999998531 21 001110 0 1
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
........+..|+|++||+.+++...++.|.+|+.
T Consensus 227 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 227 YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred EecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 00000135788999999998888888899999986
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.35 E-value=4.7e-05 Score=77.31 Aligned_cols=96 Identities=9% Similarity=-0.012 Sum_probs=67.2
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
++.|.+||............+...+..|+++++|.++++...++. |.+|+.... ........
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~-----------------~~~~~~~~ 231 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST-----------------TSTVLPFT 231 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCS-----------------CCEECCCC
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCC-----------------cceeeccC
Confidence 457888888766554433444467889999999988887766444 889987421 11111111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
+. ..+.+|+|++||+.+++.+.+++|++|++...
T Consensus 232 ~~--~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 232 GL--NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp SC--SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CC--CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 21 35899999999998889999999999998653
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.35 E-value=3e-05 Score=81.77 Aligned_cols=171 Identities=9% Similarity=0.058 Sum_probs=113.3
Q ss_pred CEEEEEECCCCeEEEEEeCCC--cEEEEEeCCC--eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSPR--IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s--~V~sV~~s~~--iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
+.|.+||.++|+.+.++..+. .+.++.+.++ +|+ +.++.|++||. +++.++++...... ...
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~------------~~~ 80 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC------------EMQ 80 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC------------EEE
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc------------ccc
Confidence 789999999999999998764 6888888775 555 67788999999 89988887652110 000
Q ss_pred eeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCC
Q 003221 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (838)
Q Consensus 249 ~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~ 328 (838)
.+++ .. .+..+++.
T Consensus 81 ~~~~-------~~---------------------------dG~~lv~~-------------------------------- 94 (276)
T 3no2_A 81 TARI-------LP---------------------------DGNALVAW-------------------------------- 94 (276)
T ss_dssp EEEE-------CT---------------------------TSCEEEEE--------------------------------
T ss_pred ccEE-------CC---------------------------CCCEEEEe--------------------------------
Confidence 1111 11 11111110
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEec------cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCC
Q 003221 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (838)
Q Consensus 329 ~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~------aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~ 402 (838)
....+.|..+|. +++.+..+. .+..+...++++++|++|++.+.++ .|.+||..
T Consensus 95 ----------------~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~-- 154 (276)
T 3no2_A 95 ----------------CGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN-- 154 (276)
T ss_dssp ----------------ESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT--
T ss_pred ----------------cCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC-EEEEECCC--
Confidence 011344555554 444444443 2223455678999999999988755 58899973
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 403 ~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
| +.+.++.++. .+.++.+.++|+.|++++.++.|..|+...
T Consensus 155 ------G----------~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 155 ------G----------QLLNSVKLSG---TPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp ------S----------CEEEEEECSS---CCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred ------C----------CEEEEEECCC---CccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 4 5777776542 356788999999999999888888777554
No 189
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.34 E-value=0.0001 Score=78.63 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=44.4
Q ss_pred CCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 347 NAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~---~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
....|.+||+.+++.+..+ .+|......|+|+|+|.++++...++ .|++|++.
T Consensus 266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~-~I~~~~~~ 321 (329)
T 3fvz_A 266 EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN-TVWKFTLT 321 (329)
T ss_dssp CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC-CEEEEEEE
T ss_pred CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC-EEEEEeCC
Confidence 3568999999999998888 47778899999999998888777755 59999974
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.33 E-value=0.001 Score=73.20 Aligned_cols=99 Identities=9% Similarity=0.074 Sum_probs=66.1
Q ss_pred CCceEEEEECCCCc--EEEEeccC----------CCCeEEEEECCCCCEEEEEecC---------CCEEEEEecCCCccc
Q 003221 347 NAGIVVVKDFVTRA--IISQFKAH----------TSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMR 405 (838)
Q Consensus 347 ~~G~V~VwDl~s~~--~v~~~~aH----------~spIsaLaFSPdGtlLATAS~d---------Gt~IrVwdi~p~~~~ 405 (838)
..|.|.+.|+.+.. .+..+.-. ......++|+|||+.|..+... +..|.|+|+..
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t---- 307 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV---- 307 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC----
Confidence 45688889986542 23333211 1224458899999888876542 24588889854
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCeEEEEecCCCCC
Q 003221 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFGG 465 (838)
Q Consensus 406 ~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~Las~S-~dGTVhIw~l~~~gg 465 (838)
+ +.+.++.-|. ..+.|+|+|||+ .|.++. .+++|.|||+...+.
T Consensus 308 ---~----------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 308 ---G----------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred ---C----------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 2 3455554442 478999999999 677766 489999999987654
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.25 E-value=1.8e-05 Score=93.63 Aligned_cols=98 Identities=8% Similarity=-0.100 Sum_probs=66.4
Q ss_pred CCceEEEEECCCCcE--EEEeccC--CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 347 NAGIVVVKDFVTRAI--ISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~--v~~~~aH--~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
.++.|.+||+.+++. ...+..| ...|..++|+ ++.++++...+|. .+||.+... | ..+
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g----------~~~ 354 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLK------G----------KPV 354 (695)
T ss_dssp TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETT------C----------CEE
T ss_pred CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------C----------Cee
Confidence 468899999987653 2334333 4568889998 7889999988664 788876421 3 234
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeC----CCeEEEEecCCC
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSPF 463 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~----dGTVhIw~l~~~ 463 (838)
.++. ......|..++|+||++.|+.... .++|++|++...
T Consensus 355 ~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 355 RTVQ-LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EECC-CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEec-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 4442 112346888999999988774433 368999998653
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.24 E-value=9.2e-05 Score=87.62 Aligned_cols=99 Identities=4% Similarity=-0.099 Sum_probs=65.8
Q ss_pred CceEEEEECCC------Cc-EEEEeccCCCCeEEEEECCCCCEEEEEecCCC---EEEEEecCCCcccCCCCCCccccCC
Q 003221 348 AGIVVVKDFVT------RA-IISQFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNS 417 (838)
Q Consensus 348 ~G~V~VwDl~s------~~-~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt---~IrVwdi~p~~~~~~~G~~~~~~~~ 417 (838)
+..|.+||+.+ +. ....+..|...+.. .|+|+|..|+..+.++. .|.+||+.. +.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-------~~------- 322 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD-------PE------- 322 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS-------CC-------
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC-------CC-------
Confidence 45788999876 43 45667777777665 58999998887776443 577888742 10
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 418 ~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
......+..+.....|.+++|++++..+++...+++.+||.++.
T Consensus 323 -~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 323 -ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp -GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred -cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 00122333322223688999998888889999999877766554
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.24 E-value=0.00044 Score=77.21 Aligned_cols=100 Identities=10% Similarity=0.072 Sum_probs=67.9
Q ss_pred CCceEEEEECCCCc--EEEEec--------c--CCCCeEEEEECCCCCEEEEEecC---------CCEEEEEecCCCccc
Q 003221 347 NAGIVVVKDFVTRA--IISQFK--------A--HTSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMR 405 (838)
Q Consensus 347 ~~G~V~VwDl~s~~--~v~~~~--------a--H~spIsaLaFSPdGtlLATAS~d---------Gt~IrVwdi~p~~~~ 405 (838)
..|.|.+.|+.+.. .+..+. . +-..+..++++|++..|..+..+ ++.|-|+|+.+
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t---- 320 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT---- 320 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT----
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC----
Confidence 46899999997654 333222 0 11233458889999988887531 35688888864
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEE-eCCCeEEEEecCCCCCc
Q 003221 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIV-SSKGTCHVFVLSPFGGD 466 (838)
Q Consensus 406 ~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~-~Las~-S~dGTVhIw~l~~~gg~ 466 (838)
+ +.+.++.-|. .+++|+||+|++ .|.++ ..+++|.|+|....+..
T Consensus 321 ---~----------kv~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 321 ---G----------ERLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp ---C----------CEEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ---C----------eEEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 2 4555555442 588999999997 66554 45899999999876543
No 194
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.14 E-value=0.00075 Score=76.23 Aligned_cols=277 Identities=10% Similarity=0.022 Sum_probs=149.0
Q ss_pred CeEEEEEec-----CcEEEEEccCCCceeEEeeeccCcEEEEEEecCCCCCCCCCCcccCCcEEEEEECCCCCcCCCCCC
Q 003221 75 KQVLLLGYQ-----NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (838)
Q Consensus 75 ~~vL~lG~~-----~G~qVWdv~~~g~v~ells~hdg~V~~l~~lP~p~~~~~~d~F~~srpLLavV~~d~t~~~~~~~~ 149 (838)
+++++.... +.+.|+|.. +.++...+.-...| .+.+.|+. ..|.+......
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~-t~~vv~~I~vG~~P--gia~SpDg-------------k~lyVan~~~~-------- 140 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGS-TGRILGMTDGGFLP--HPVAAEDG-------------SFFAQASTVFE-------- 140 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETT-TTEEEEEEEECSSC--EEEECTTS-------------SCEEEEEEEEE--------
T ss_pred CEEEEECCCcCCCCCeEEEEECC-CCEEEEEEECCCCC--ceEECCCC-------------CEEEEEecccc--------
Confidence 556666553 469999995 46666666555567 68888763 13333221000
Q ss_pred CCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--------CcEEEEEeCCC--eEEEEe---CCeEEEE
Q 003221 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--------SSVCMVRCSPR--IVAVGL---ATQIYCF 216 (838)
Q Consensus 150 ~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~--------s~V~sV~~s~~--iLaV~l---~~~I~Iw 216 (838)
....|. ..+.|.++|..+++.+.++... ..-..+.++++ +|.|+. .+.|.++
T Consensus 141 -----~~~~G~----------~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVI 205 (426)
T 3c75_H 141 -----RIARGK----------RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVV 205 (426)
T ss_dssp -----ETTEEE----------EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEE
T ss_pred -----ccccCC----------CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEE
Confidence 000000 0157999999999999998764 23457778764 666654 3579999
Q ss_pred ECCCCceeeEEeecCCcccCCCCccccccccceeEEc-ccEEEEeCCCceee-cC--CCCCCcccCCCCCCCCCCCCCCc
Q 003221 217 DALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG-PRWLAYASNTLLLS-NS--GRLSPQNLTPSGVSPSTSPGGSS 292 (838)
Q Consensus 217 D~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Als-pr~LAys~~~~~l~-~~--G~vs~q~l~~~~~s~stsps~gs 292 (838)
|+.+++.+.++.. +.+ ......+ ..|++...+..+++ +. +.+
T Consensus 206 D~~t~kvv~~I~v---~g~-----------~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v-------------------- 251 (426)
T 3c75_H 206 DLEGKTFDRMLDV---PDC-----------YHIFPASPTVFYMNCRDGSLARVDFADGET-------------------- 251 (426)
T ss_dssp ETTTTEEEEEEEC---CSE-----------EEEEEEETTEEEEEETTSSEEEEECCTTCC--------------------
T ss_pred ECCCCeEEEEEEc---CCc-----------eeeccCCCcEEEEEcCCCCEEEEECCCCcE--------------------
Confidence 9999988777653 200 0011111 13455554433222 11 111
Q ss_pred ceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE--EEecc---
Q 003221 293 LVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--SQFKA--- 367 (838)
Q Consensus 293 lva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v--~~~~a--- 367 (838)
..+. . ....+.. .|-....++..+. +...+ ....|.|.+.|..+.+.. ..+.-
T Consensus 252 -~~~~-~-~~~~v~~-------------~p~~~~~~~~~dg--~~~~~----~s~~g~V~ViD~~~~~~~v~~~~~~~~~ 309 (426)
T 3c75_H 252 -KVTN-T-EVFHTED-------------ELLINHPAFSLRS--GRLVW----PTYTGKIFQADLTAEGATFRAPIEALTE 309 (426)
T ss_dssp -EEEE-C-CCCSCTT-------------SCBCSCCEECTTT--CEEEE----EBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred -EEEe-e-eeeccCC-------------CceeeEeeecCCC--CEEEE----EeCCCcEEEEeccCCceEEeeeeeeccc
Confidence 0000 0 0000000 0000000001111 10000 123578999998765421 11110
Q ss_pred -------CCCCeEEEEECCCCCEEEEEecC---------CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003221 368 -------HTSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (838)
Q Consensus 368 -------H~spIsaLaFSPdGtlLATAS~d---------Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~ 431 (838)
+-.....++|+|+|++|..+..+ +..|-|+|+.+ + +.+.++.-|.
T Consensus 310 ~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-------~----------kvv~~I~vg~-- 370 (426)
T 3c75_H 310 AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-------G----------ERINKIELGH-- 370 (426)
T ss_dssp TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-------C----------CEEEEEEEEE--
T ss_pred cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-------C----------eEEEEEECCC--
Confidence 00112237899998877776431 23599999864 2 3555554342
Q ss_pred ccEEEEEEccCCC-EEEEEe-CCCeEEEEecCCCCCc
Q 003221 432 ATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFGGD 466 (838)
Q Consensus 432 a~I~sIaFSpDg~-~Las~S-~dGTVhIw~l~~~gg~ 466 (838)
..+.|+|+||++ +|+++. .+++|.|+|+...+..
T Consensus 371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp -EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 478899999999 788777 5899999999887644
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.13 E-value=6.7e-05 Score=79.13 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=54.2
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC-----C-EEEEEecCCCcccCCCCCCccccCCcceE
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-----N-NINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG-----t-~IrVwdi~p~~~~~~~G~~~~~~~~~~~~ 421 (838)
...|.+||+.+++.+..+.. . .+..++|+||| ++++++.++ . ..+||.+.. | .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-------~-----------~ 209 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED-------G-----------K 209 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET-------T-----------E
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC-------C-----------c
Confidence 45799999998876455655 4 88899999999 888887643 1 356676531 3 2
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003221 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (838)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dG 453 (838)
+..+..+ ..+.++ ||||++|+.++.++
T Consensus 210 ~~~l~~~---~~~~~~--spdg~~l~~~~~~~ 236 (347)
T 2gop_A 210 EEKMFEK---VSFYAV--DSDGERILLYGKPE 236 (347)
T ss_dssp EEEEEEE---ESEEEE--EECSSCEEEEECCS
T ss_pred eEEeccC---cceeeE--CCCCCEEEEEEccc
Confidence 2333322 234444 99999999888654
No 196
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.11 E-value=0.0033 Score=67.09 Aligned_cols=84 Identities=10% Similarity=0.098 Sum_probs=53.6
Q ss_pred ceEEEEECC--CC-c-----EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 349 GIVVVKDFV--TR-A-----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 349 G~V~VwDl~--s~-~-----~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
+.|.+||+. ++ + ....+..+......++++++|.++++....+ .|.+|+.. | .
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~-~v~~~d~~--------g----------~ 261 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG-AVDRYDTD--------G----------N 261 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT-EEEEECTT--------C----------C
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC-EEEEECCC--------C----------C
Confidence 456666654 33 2 2333433445567899999999888765534 58888862 3 2
Q ss_pred EEEEEecccccccEEEEEEc-cCCCEEEEEeCCC
Q 003221 421 HLYKLHRGITSATIQDICFS-HYSQWIAIVSSKG 453 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFS-pDg~~Las~S~dG 453 (838)
.+..+.-. ...+.+++|+ +|++.|.+++.++
T Consensus 262 ~~~~i~~~--~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 262 HIARYEVP--GKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEEECS--CSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEEECC--CCCcEEEEEecCCCCEEEEEecCC
Confidence 44444322 2359999998 9998887766554
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.11 E-value=0.0014 Score=67.92 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=60.4
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcc-eEEEEEec
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH-VHLYKLHR 427 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~-~~l~~L~R 427 (838)
+.|..+|.. ++ +..+..+....+.++|+|||++|++.+. +..|.+|++... |. . .....+ .
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~-~~~i~~~~~~~~------g~--------~~~~~~~~-~ 214 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTG-DNATHRYCLNAR------GE--------TEYQGVHF-T 214 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETT-TTEEEEEEECSS------SC--------EEEEEEEE-C
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCC-CCeEEEEEECCC------Cc--------CcCCCeEe-e
Confidence 456666665 43 3445566677899999999999955554 556999998521 31 0 011222 2
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
. ....+.+|+|++||+..++. ++.|.+|+.+
T Consensus 215 ~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 215 V-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp C-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred C-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 1 22346789999999966665 7889999864
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.10 E-value=0.0077 Score=61.21 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=62.0
Q ss_pred CceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~-~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+.|.+||. +++.... +..+...+..|+++++|+++++... +..|.+||. . |. ...+.+.
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~ 221 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII-GNKIGRITT-S-------GE---------ITEFKIP 221 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECS
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC-CceEEEECC-C-------Cc---------EEEEECC
Confidence 356777777 5554332 3344566889999999998877655 445888887 3 31 1222221
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
.....+.+|++++||+..++...++.|.+|+.
T Consensus 222 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 222 --TPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp --STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred --CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 12246899999999997777667888999986
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.10 E-value=0.00039 Score=82.80 Aligned_cols=96 Identities=5% Similarity=-0.048 Sum_probs=64.2
Q ss_pred CceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 348 ~G~V~VwDl~s~--~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
.+.|.+||+.++ +....+..+...|..++|+ ++.++++...+|. .+||.+... | ..+..+
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g----------~~~~~l 401 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD------G----------KPAGAV 401 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT------S----------CEEEEC
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------C----------Cceeec
Confidence 467999999874 3444455566667788888 6778888888664 677766321 3 234444
Q ss_pred ecccccccEEEEEEccCCCEEEEEe----CCCeEEEEecCC
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSP 462 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S----~dGTVhIw~l~~ 462 (838)
.. .....|..++|+||++.|+... ..+++++|++..
T Consensus 402 ~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 402 SL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp BC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred cC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 31 1234689999999998776432 236899999864
No 200
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.09 E-value=0.00054 Score=77.83 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=56.3
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccc---------c---ccEEEEE
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT---------S---ATIQDIC 438 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t---------~---a~I~sIa 438 (838)
..+.+.+||||++|..+......|.|||+... + ..+.+..+.-|-. . ..-+.++
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~------~--------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP------F--------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSST------T--------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC------C--------CcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence 46789999999999999887778999999521 1 1134555544311 0 0247799
Q ss_pred EccCCCEEEEEe------------CCCeEEEE--ecCCCCC
Q 003221 439 FSHYSQWIAIVS------------SKGTCHVF--VLSPFGG 465 (838)
Q Consensus 439 FSpDg~~Las~S------------~dGTVhIw--~l~~~gg 465 (838)
+||||++|.++. .+...+++ ++++.+|
T Consensus 388 lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G 428 (462)
T 2ece_A 388 ISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG 428 (462)
T ss_dssp ECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC
T ss_pred EcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC
Confidence 999999999998 33345555 6687766
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.09 E-value=0.0023 Score=71.15 Aligned_cols=73 Identities=11% Similarity=0.206 Sum_probs=50.7
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-c----ccc--------cccEEEE
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-R----GIT--------SATIQDI 437 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-R----G~t--------~a~I~sI 437 (838)
....|+|+|+|.++++-+..++.|++|++.. | .+..+. + |.. -.....|
T Consensus 324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-------G-----------~v~~~~g~~~~~g~~~g~~~~~~~~~P~gi 385 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-------G-----------YVSTVAGQVDVASQIDGTPLEATFNYPYDI 385 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTTCEEEEEETTT-------T-----------EEEEEEECTTCBSCCCBSTTTCCBSSEEEE
T ss_pred CCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-------C-----------EEEEEeCCCCCCCcCCCChhceEeCCceEE
Confidence 4678999999997666541467799999632 3 222221 1 100 1248899
Q ss_pred EEccCCCEEEEEeCCCeEEEEecC
Q 003221 438 CFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 438 aFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
++++||..+++-..++.|+.++++
T Consensus 386 avd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 386 CYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEcCCCCEEEEECCCCeEEEEEeC
Confidence 999999988888888999888764
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.07 E-value=0.0026 Score=66.64 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=56.6
Q ss_pred ceEEEEEC--CCCc-----EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceE
Q 003221 349 GIVVVKDF--VTRA-----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (838)
Q Consensus 349 G~V~VwDl--~s~~-----~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~ 421 (838)
+.|.+||+ .++. ....+..+......|+++++|.+.++... +..|.+||... | +.
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-~~~v~~~d~~t-------G----------~~ 232 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-GGRVIRLDPVT-------G----------KR 232 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-TTEEEEECTTT-------C----------CE
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-CCEEEEEcCCC-------c----------eE
Confidence 45666665 2332 23344444556788999999998887766 55588888743 3 35
Q ss_pred EEEEecccccccEEEEEEc-cCCCEEEEEeCC
Q 003221 422 LYKLHRGITSATIQDICFS-HYSQWIAIVSSK 452 (838)
Q Consensus 422 l~~L~RG~t~a~I~sIaFS-pDg~~Las~S~d 452 (838)
+..+.-. ...+.+++|+ ||++.|.+++.+
T Consensus 233 ~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 233 LQTVKLP--VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEEECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence 5555432 2368999999 999988887765
No 203
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.04 E-value=9.3e-06 Score=88.61 Aligned_cols=99 Identities=6% Similarity=-0.001 Sum_probs=75.6
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec---------CCCEEEEEecCCCcccCCCCCCccccCC
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~---------dGt~IrVwdi~p~~~~~~~G~~~~~~~~ 417 (838)
.++.|.+||..+++.+..+..+..| .++|+|||++|+.++. .+..|.+||+.. +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-------~-------- 91 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-------L-------- 91 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-------C--------
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-------C--------
Confidence 4789999999999999999988877 8999999999999873 134599999853 2
Q ss_pred cceEEEEEeccc----ccccEEEEEEccCCCEEEEEeC--CCeEEEEecCCCC
Q 003221 418 SHVHLYKLHRGI----TSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPFG 464 (838)
Q Consensus 418 ~~~~l~~L~RG~----t~a~I~sIaFSpDg~~Las~S~--dGTVhIw~l~~~g 464 (838)
+.+.++.-+. .......|+|||||++|.++.. +++|.||++...+
T Consensus 92 --~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 92 --TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp --CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred --cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence 3444443211 0113456899999999999874 5899999998754
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.02 E-value=7.7e-05 Score=83.35 Aligned_cols=90 Identities=9% Similarity=0.096 Sum_probs=71.1
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+|.|++||+.+......+..|..+|..+.+.+.. +|.++.+|. +.+||+.. + ... .+.
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~~-------~----------~~~-~~~ 162 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLRT-------K----------STK-QLA 162 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETTT-------C----------CEE-EEE
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEccC-------C----------ccc-ccc
Confidence 35789999999887777888899999998887763 888888775 99999963 2 122 221
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
..|.|++|||+| ++++..||++++|+.+...
T Consensus 163 -----~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 163 -----QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp -----ESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred -----CCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence 259999999999 7889999999999775433
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.87 E-value=0.004 Score=65.15 Aligned_cols=50 Identities=8% Similarity=0.005 Sum_probs=41.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCC-eEEEEeCCeEEEEECCCCce
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR-IVAVGLATQIYCFDALTLEN 223 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~-iLaV~l~~~I~IwD~~t~e~ 223 (838)
++|..||..+++. ..+.+...+.++.++++ .|.++....|++||..+++.
T Consensus 35 ~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 35 KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSA 85 (297)
T ss_dssp TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEE
T ss_pred CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcE
Confidence 6899999998875 56777889999999875 56667788999999988764
No 206
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.80 E-value=0.04 Score=55.82 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=58.1
Q ss_pred CceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~-~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+.|.+||. +++... .+..+...+.+|+++++|+++++.... ..|.+||.. |. ...+.+.
T Consensus 203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-~~i~~~d~~--------g~---------~~~~~~~ 263 (299)
T 2z2n_A 203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA-NKIGRLTSN--------NI---------IEEYPIQ 263 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT-TEEEEEETT--------TE---------EEEEECS
T ss_pred CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCC-ceEEEECCC--------Cc---------eEEEeCC
Confidence 456777887 555332 233456778999999999988776553 458899872 20 1222222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
.+ ...+.++++ ++++..++.+ .+.+..|+...
T Consensus 264 ~~--~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 264 IK--SAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp SS--SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CC--CCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 21 236899999 9988776665 55666666543
No 207
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.79 E-value=0.0011 Score=73.45 Aligned_cols=55 Identities=7% Similarity=-0.153 Sum_probs=44.3
Q ss_pred EEEEEECCCCeEEEEEeCCCcEEEEEeCCC--eEEEEe-----------CCeEEEEECCCCceeeEEee
Q 003221 174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL-----------ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 174 tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~--iLaV~l-----------~~~I~IwD~~t~e~l~tL~t 229 (838)
+|.++|..+++.+.++.....= .+.++++ .|.|+. ++.|.+||+.|++...++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 8999999999999999754322 7888875 666664 46799999999999888864
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.76 E-value=0.0012 Score=70.97 Aligned_cols=55 Identities=9% Similarity=-0.023 Sum_probs=41.2
Q ss_pred CEEEEEECCCCeEEEEEeCCC-------cEEEEEeCC--CeEEEE-----eCCeEEEEECCCCceeeEE
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS-------SVCMVRCSP--RIVAVG-----LATQIYCFDALTLENKFSV 227 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s-------~V~sV~~s~--~iLaV~-----l~~~I~IwD~~t~e~l~tL 227 (838)
.+|.+||+++++.+..+.++. .+..|++++ ..+.++ ....|++||+.+++....+
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 689999999999989888752 357888874 355454 3468999999988765544
No 209
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.67 E-value=0.004 Score=73.98 Aligned_cols=43 Identities=2% Similarity=-0.079 Sum_probs=31.6
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
+.+.++..+. .+++..++.++..+++++.+|++++|++.+.+.
T Consensus 468 ~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 468 KAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 4555554332 345566788999999999999999999987553
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.67 E-value=0.005 Score=73.26 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=64.2
Q ss_pred CceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEecCC---CEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 348 ~G~V~VwDl~s~--~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG---t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
...|.+||+.++ +....+..+...+.... +|+|+.|+..+.++ ..|.+||+.. + . ...
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~-------~--------~-~~~ 355 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG-------S--------T-PRF 355 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS-------S--------S-CEE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC-------C--------c-ccc
Confidence 357899999876 31456666666665554 49999998887643 2377777642 1 0 122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
..+..+. ...+.+++|+ +++.+++...+++.+||.++..+
T Consensus 356 ~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 395 (741)
T 1yr2_A 356 DTVVPES-KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG 395 (741)
T ss_dssp EEEECCC-SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred EEEecCC-CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 3333332 2357788888 67788889999999999887544
No 211
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.58 E-value=0.019 Score=60.75 Aligned_cols=175 Identities=14% Similarity=0.085 Sum_probs=114.1
Q ss_pred CEEEEEECCCCeEEEEEeCCC--cEEEEEeCCCeEEEEe--CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s--~V~sV~~s~~iLaV~l--~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
++|+++|+++++.+.++.... -...+.+..+.|.++. ++.|.++|+.|++.+.++... .| .
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~-------------~- 108 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK-------------D- 108 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS-------------S-
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC-------------C-
Confidence 689999999999999998755 3346677777666655 568999999999888776532 11 0
Q ss_pred eeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCC
Q 003221 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (838)
Q Consensus 249 ~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~ 328 (838)
.++ |++.+.. + |.
T Consensus 109 g~g-----lt~Dg~~-----------------------------l----------------------~v----------- 121 (266)
T 2iwa_A 109 GWG-----LATDGKI-----------------------------L----------------------YG----------- 121 (266)
T ss_dssp CCE-----EEECSSS-----------------------------E----------------------EE-----------
T ss_pred eEE-----EEECCCE-----------------------------E----------------------EE-----------
Confidence 011 1111100 0 00
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC--CC---CeEEEEECCCCCEEEEEecCCCEEEEEecCCCc
Q 003221 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TS---PISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (838)
Q Consensus 329 ~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH--~s---pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~ 403 (838)
++.+++|.++|..+.+.+..+.-- .. .++.|.|. +|++.|+. .....|.+.|..+
T Consensus 122 ----------------s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~-~~~~~V~vID~~t-- 181 (266)
T 2iwa_A 122 ----------------SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI-WQTDCIARISAKD-- 181 (266)
T ss_dssp ----------------ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-TTSSEEEEEETTT--
T ss_pred ----------------ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec-CCCCeEEEEECCC--
Confidence 012568999999999888887632 22 36788888 78665554 4355688999864
Q ss_pred ccCCCCCCccccCCcceEEEEEec-ccc----------cccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCC
Q 003221 404 MRSGSGNHKYDWNSSHVHLYKLHR-GIT----------SATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (838)
Q Consensus 404 ~~~~~G~~~~~~~~~~~~l~~L~R-G~t----------~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~~~g 464 (838)
| +.+..+.- |.. ......|+|+||++.|.++. ..+++.+.++.+..
T Consensus 182 -----g----------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 182 -----G----------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp -----C----------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred -----C----------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 3 23444432 211 12568999999987665544 66888888887653
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.54 E-value=0.013 Score=69.20 Aligned_cols=94 Identities=9% Similarity=0.019 Sum_probs=64.4
Q ss_pred CceEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEecCCC--EEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 348 AGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 348 ~G~V~VwDl~s~~~--v~~~~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
.+.|.++|+.++.. ...|..|...+. .|+++|..|+....++. .|++|++. | ....
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--------g----------~~~~ 363 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--------G----------KRVR 363 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--------S----------CEEE
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--------C----------CeeE
Confidence 46788899887643 356667776665 99999998887766553 47777763 2 2334
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEecCC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSP 462 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~d----GTVhIw~l~~ 462 (838)
.+... ....+..+++++|++.|+....+ ++++.|++..
T Consensus 364 ~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 364 EVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred EeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 44322 12357888999999988776655 7888888764
No 213
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.52 E-value=0.0019 Score=65.29 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=60.9
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
++.|.+||..+.........+...+..|+++|+|+++++... +..|.+||... + ........
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~~-------~----------~~~~~~~~ 189 (270)
T 1rwi_B 128 NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD-NNRVVKLEAES-------N----------NQVVLPFT 189 (270)
T ss_dssp GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG-GTEEEEECTTT-------C----------CEEECCCS
T ss_pred CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC-CCEEEEEecCC-------C----------ceEeeccc
Confidence 345666765544332222233346788999999998877665 44589998742 1 11111111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
+. ..+.+|++++||+.+++...++.|.+|+..
T Consensus 190 ~~--~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 190 DI--TAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp SC--CSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred CC--CCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 11 358899999999888877788899999864
No 214
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.50 E-value=0.003 Score=74.52 Aligned_cols=96 Identities=7% Similarity=0.120 Sum_probs=59.3
Q ss_pred CceEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEEEEEecCC-CEEEEEecCCCcccCCCCCCccccCCcceEE
Q 003221 348 AGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (838)
Q Consensus 348 ~G~V~VwDl~s~~----~v~~~~aH~spIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l 422 (838)
...|.+|++.+++ ++.....|...+..++|||||++|+.++.++ ....||-+... .+ .+
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~-----~~-----------~~ 264 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG-----EK-----------DF 264 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT-----CS-----------SC
T ss_pred CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC-----CC-----------ce
Confidence 3469999998765 3444455667889999999999999887655 33444443211 01 12
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeC----CCeEEEEecCCC
Q 003221 423 YKLHRGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSPF 463 (838)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~Las~S~----dGTVhIw~l~~~ 463 (838)
..|..+. . .+....| +||+ |+..++ +++|.+|++...
T Consensus 265 ~~l~~~~-~-~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 265 RLLVKGV-G-AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp EEEEECS-S-CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred EEeecCC-C-ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 2232221 1 2455556 6777 555554 578888888654
No 215
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.48 E-value=6.6e-05 Score=82.28 Aligned_cols=92 Identities=12% Similarity=0.001 Sum_probs=46.3
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
..+|.|..||..+++.+..+..|. ...++|++..|++++.+|+ |+.||... |. .+.++
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~t-------G~----------~~W~~ 156 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKT-------RE----------LRWNA 156 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSS-------SS----------CCCEE
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCC-------CC----------EEEeE
Confidence 346889999999999888887664 2456788889999988665 89999854 41 22222
Q ss_pred ecccccccEEEEEEccCC---CEEEEEeCCCeEEEEecCCC
Q 003221 426 HRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg---~~Las~S~dGTVhIw~l~~~ 463 (838)
..+ .....+++.|. ..+++++.+|+++.|+....
T Consensus 157 ~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 157 TYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp EEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred ecc----cccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 211 11234455543 56778899999999998653
No 216
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.46 E-value=0.12 Score=52.30 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=59.4
Q ss_pred CceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~-~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+.|.++|. +++... .+..+...+..|+++++|.+.++... +..|.+|+. . |. ...+.+.
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~ 226 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT-T-------GE---------ISEYDIP 226 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECS
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC-C-------Cc---------EEEEECC
Confidence 345777776 444332 12234456889999999998876655 445888886 2 31 1222221
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
. ....+.+|+++++|+..++...++.|.+|+.
T Consensus 227 ~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 227 T--PNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp S--TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred C--CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 1 1235899999999997766666788988876
No 217
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.45 E-value=0.11 Score=52.57 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=55.4
Q ss_pred CceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~-~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+.|.+||. +++... .+..+...+.+|+++++|++.++... +..|.+|+.. |. ...+.+.
T Consensus 208 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~~--------g~---------~~~~~~~ 268 (300)
T 2qc5_A 208 GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG-ANQIGRITND--------NT---------IQEYQLQ 268 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEECTT--------SC---------EEEEECC
T ss_pred CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC-CCeEEEECCC--------Cc---------EEEEECC
Confidence 345777776 343322 23345567889999999997776654 3458888862 21 1223332
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
.+ ...+.+|++++||+..++.. + .|..|+.
T Consensus 269 ~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 269 TE--NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ST--TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred cc--CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 12 23578999999998655544 4 6666654
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.44 E-value=0.0081 Score=68.28 Aligned_cols=100 Identities=11% Similarity=0.193 Sum_probs=73.1
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCC--eE-EEEECCCCCEEEEEe------------------cCCCEEEEEecCCCcc
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSP--IS-ALCFDPSGTLLVTAS------------------VYGNNINIFRIMPSCM 404 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~sp--Is-aLaFSPdGtlLATAS------------------~dGt~IrVwdi~p~~~ 404 (838)
...|.|.++|..+.+++.++..-..+ +. .+-|+|+++.|+|+. ..|..|.|||+..
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--- 237 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--- 237 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---
Confidence 44688999999999999999743333 22 377899999999986 3478899999953
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEe------CCCeEEEEecCC
Q 003221 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVS------SKGTCHVFVLSP 462 (838)
Q Consensus 405 ~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF--SpDg~~Las~S------~dGTVhIw~l~~ 462 (838)
+ +.+.++.-|........|.| +||++++.++. .+++|.+|..+.
T Consensus 238 ----~----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 238 ----R----------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp ----T----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ----C----------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 2 45666655522223455656 99999988877 567898888763
No 219
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.43 E-value=0.015 Score=59.87 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=61.7
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEEC----CCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFD----PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFS----PdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
.+.|..||.. ++.. .+..+......++|+ |+|+.|..+...+..|.+||+... |. +. ....+.
T Consensus 152 ~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~------g~----~~-~~~~~~ 218 (314)
T 1pjx_A 152 FGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP------AK----IE-NKKVWG 218 (314)
T ss_dssp CEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET------TE----EE-EEEEEE
T ss_pred CCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC------Cc----cc-cceEEE
Confidence 4567777765 4433 333344456889999 999766555544556999997421 20 00 000111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
.+ .+.....+..|+|++||+.+++...++.|.+|+..
T Consensus 219 ~~-~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 219 HI-PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EC-CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EC-CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 22 11110357889999999988888888899999865
No 220
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.41 E-value=0.015 Score=61.53 Aligned_cols=171 Identities=10% Similarity=0.041 Sum_probs=108.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE--EEEeCCCeEEEEe--CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccc
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~--sV~~s~~iLaV~l--~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g 248 (838)
..|+.+|+++++.+..+.+....+ .+....+.|-+.. ++.+.+||+.|++.+.++...+..
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--------------- 129 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--------------- 129 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC---------------
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc---------------
Confidence 479999999999999999887663 4666666555555 678999999999988876532110
Q ss_pred eeEEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCC
Q 003221 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (838)
Q Consensus 249 ~~Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~ 328 (838)
.+ |++.+. .+. .
T Consensus 130 -~g-----lt~dg~-----------------------------~L~----------------------~----------- 141 (262)
T 3nol_A 130 -WG-----LTHNDQ-----------------------------YLI----------------------M----------- 141 (262)
T ss_dssp -CC-----EEECSS-----------------------------CEE----------------------E-----------
T ss_pred -eE-----EecCCC-----------------------------EEE----------------------E-----------
Confidence 11 111110 000 0
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC--CCC---eEEEEECCCCCEEEEEecCCCEEEEEecCCCc
Q 003221 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSP---ISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (838)
Q Consensus 329 ~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH--~sp---IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~ 403 (838)
.+.+++|.++|..+.+.+..+... ..| ++.|.|. +|++.|.. .....|.+.|..+
T Consensus 142 ----------------SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~-w~~~~I~vIDp~t-- 201 (262)
T 3nol_A 142 ----------------SDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV-WQTNKIVRIDPET-- 201 (262)
T ss_dssp ----------------CCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-TTSSEEEEECTTT--
T ss_pred ----------------ECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE-ccCCeEEEEECCC--
Confidence 012467999999999888887653 233 5668886 78766544 4455688888754
Q ss_pred ccCCCCCCccccCCcceEEEEEecc--------cccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 404 MRSGSGNHKYDWNSSHVHLYKLHRG--------ITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 404 ~~~~~G~~~~~~~~~~~~l~~L~RG--------~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
|. ......+... ........|||+|+++.|.+.+..= =++|.|
T Consensus 202 -----G~--------V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W-p~~~ev 252 (262)
T 3nol_A 202 -----GK--------VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW-PKVFEI 252 (262)
T ss_dssp -----CB--------EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC-SEEEEE
T ss_pred -----Cc--------EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC-CceEEE
Confidence 41 1222333100 1123578999999999999888663 244444
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.40 E-value=0.00048 Score=76.84 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=74.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec---------CCCEEEEEecCCCcccCCCCCCccccCCc
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~---------dGt~IrVwdi~p~~~~~~~G~~~~~~~~~ 418 (838)
++.|.|+|..+++++.++..-..| . |+|||||++|..++. ++..|.+||..+ +
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t-------~--------- 119 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-------L--------- 119 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-------C---------
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------C---------
Confidence 579999999999999999977777 4 999999999887762 234699999864 2
Q ss_pred ceEEEEEeccc-----ccccEEEEEEccCCCEEEEEeC--CCeEEEEecCCCCC
Q 003221 419 HVHLYKLHRGI-----TSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPFGG 465 (838)
Q Consensus 419 ~~~l~~L~RG~-----t~a~I~sIaFSpDg~~Las~S~--dGTVhIw~l~~~gg 465 (838)
+.+.++.-+. ....-..++|+|||++|.++.. +++|.|+|+....-
T Consensus 120 -~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 120 -LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp -CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred -eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 3444443221 1112346899999999998874 68999999987653
No 222
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.28 E-value=0.028 Score=62.35 Aligned_cols=96 Identities=5% Similarity=-0.036 Sum_probs=58.4
Q ss_pred CceEEEEECCCCcEEEE----eccCCC--CeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 348 AGIVVVKDFVTRAIISQ----FKAHTS--PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~----~~aH~s--pIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
++.|..||..++..... ..++.. |.+.|+|+|+ |.+++ +....+.|++|+.. |. .
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv-~d~~~~~I~~~~~~--------g~---------~ 300 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM-SDQNLSSVYKITPD--------GE---------C 300 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE-EETTTTEEEEECTT--------CC---------E
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE-EeCCCCEEEEEecC--------CC---------E
Confidence 56788888876653222 222222 2349999996 55555 44446668888763 21 1
Q ss_pred EEEEEec---ccc--------cccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 003221 421 HLYKLHR---GIT--------SATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (838)
Q Consensus 421 ~l~~L~R---G~t--------~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~ 461 (838)
....-.. |.. -.....|+|++||+.+++-+ .++.|++|++.
T Consensus 301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 1111000 100 12378999999999888877 88899999874
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.23 E-value=0.087 Score=55.94 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=59.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCC-CCccccCCcceEEEEEec
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG-NHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G-~~~~~~~~~~~~l~~L~R 427 (838)
+.|..+| +++. ..+..+....+.++|+|||+.|..+...+..|.+|++.+. .| . .. ..+.+..+.
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-----~Gl~----~~-~~~~~~~~~- 226 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-----TGLP----TG-KAEVFIDST- 226 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-----TCCB----SS-CCEEEEECT-
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-----cCCc----cc-CceEEEECC-
Confidence 4566666 4443 3333344456789999999977666655567999997411 02 1 00 001222221
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
+ ....+..+++.+||+..++...++.|.+|+.
T Consensus 227 ~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 227 G-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp T-SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred C-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 1 1234788999999997777767788888875
No 224
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.22 E-value=0.0029 Score=69.64 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=69.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec---------CCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~---------dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
.|.+||..+++.+..+..-..| .++|||||++|+.+.. ++..|.+||+.. + +
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-------~----------~ 108 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-------F----------L 108 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC-------C----------c
Confidence 8999999999999999876666 9999999999998863 245689999853 1 2
Q ss_pred EEEEEecc-----cccccEEEEEEccCCCEEEEEeC--CCeEEEEecCCC
Q 003221 421 HLYKLHRG-----ITSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPF 463 (838)
Q Consensus 421 ~l~~L~RG-----~t~a~I~sIaFSpDg~~Las~S~--dGTVhIw~l~~~ 463 (838)
.+.++.-+ .+...-..++|||||++|.+++. +++|.++| ...
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 33332211 00112457999999999999874 47899999 654
No 225
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.20 E-value=0.06 Score=56.26 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=45.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE--EEEEeCCCeEEEEe--CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V--~sV~~s~~iLaV~l--~~~I~IwD~~t~e~l~tL~t 229 (838)
..|+.+|+++|+.+..+..+... ..+.+..+.|-+.. ++.+.+||+.|++.+.++..
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 58999999999999999988765 44566666555544 67899999999998887653
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.16 E-value=0.075 Score=55.51 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=52.6
Q ss_pred ceEEEEECCCCcE--EEEe-ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 349 GIVVVKDFVTRAI--ISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 349 G~V~VwDl~s~~~--v~~~-~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
+.|.+||+..+.. ...+ .........|+++++|.+.++. . + -|.+|+.. | ..+..+
T Consensus 215 ~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~-~-gv~~~~~~--------g----------~~~~~~ 273 (305)
T 3dr2_A 215 VEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-G-T-GVCVFDSD--------G----------QLLGHI 273 (305)
T ss_dssp CEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-S-S-EEEEECTT--------S----------CEEEEE
T ss_pred CEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-C-C-cEEEECCC--------C----------CEEEEE
Confidence 4677777654331 1111 1123344679999999977665 3 3 38888862 3 344454
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEE
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCH 456 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGTVh 456 (838)
... ..+.+++|++|++.|.+++.++..+
T Consensus 274 ~~~---~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 274 PTP---GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp ECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred ECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 322 2478899999999999999875433
No 227
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.13 E-value=0.02 Score=60.65 Aligned_cols=56 Identities=5% Similarity=-0.017 Sum_probs=44.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEE--EEeCCCeEEEEe--CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCM--VRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~s--V~~s~~iLaV~l--~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|+.+|+++++.+..+ ++...+. +.+..+.|-+.. ++.+.+||+.|++.+.++..
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 56999999999999998 8776544 777777555544 77899999999998887753
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.07 E-value=0.43 Score=50.86 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+|.|..+|..+++.+..... .....+..+ +..|..++.+|. +..||..+ | +.+.+..
T Consensus 247 ~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~t-------G----------~~~w~~~ 304 (376)
T 3q7m_A 247 YNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDR-VMALTIDG-------G----------VTLWTQS 304 (376)
T ss_dssp TTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCC-EEEEETTT-------C----------CEEEEEC
T ss_pred cCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCe-EEEEECCC-------C----------cEEEeec
Confidence 467899999998887766553 334455543 556666777666 88899854 4 3444443
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
.. ....+..... .+..|.+++.+|.+++|+....
T Consensus 305 ~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 305 DL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp TT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred cc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence 11 1111222222 3567889999999999997653
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.04 E-value=0.00092 Score=74.00 Aligned_cols=94 Identities=10% Similarity=-0.060 Sum_probs=71.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEe---------cCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---------VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS---------~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
.|.|+|..+++++.+|..-..| .++|+|||++|..+. +++..|.|||+.+ + +
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------~----------~ 107 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------F----------L 107 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------C----------C
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------C----------C
Confidence 8999999999999999877778 799999999999887 3456799999965 2 3
Q ss_pred EEEEEecc-cc----cccEEEEEEccCCCEEEEEeC--CCeEEE--EecCC
Q 003221 421 HLYKLHRG-IT----SATIQDICFSHYSQWIAIVSS--KGTCHV--FVLSP 462 (838)
Q Consensus 421 ~l~~L~RG-~t----~a~I~sIaFSpDg~~Las~S~--dGTVhI--w~l~~ 462 (838)
.+.++.-| .. ......++|||||+||.++.. ..+|.| +|+..
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 55555432 00 012346899999999999874 467888 88755
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.98 E-value=0.051 Score=58.09 Aligned_cols=80 Identities=6% Similarity=0.022 Sum_probs=49.2
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE-ecccccccEEEEEEccCCCEEEEE
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITSATIQDICFSHYSQWIAIV 449 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L-~RG~t~a~I~sIaFSpDg~~Las~ 449 (838)
.++.|+|+|||+.|..++..++.|..++.... .+ +... +. .....+..+ .+| ....|+|++||+.+++.
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~--~~--~~~~-~~-~~~~~~~~~g~~g----~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADL--SN--LQLT-DA-ELGSKIERYSEKP----ICDGISIDKDHNIYVGD 265 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHH--TC--TTCC-HH-HHHTTCEEEEECC----SCSCEEECTTCCEEEEE
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHh--cC--CCCC-hh-hhhcceEecccCC----CCceEEECCCCCEEEEc
Confidence 35789999999999999887875544443110 00 0000 00 000001111 122 24569999999999999
Q ss_pred eCCCeEEEEec
Q 003221 450 SSKGTCHVFVL 460 (838)
Q Consensus 450 S~dGTVhIw~l 460 (838)
..+++|.+|+.
T Consensus 266 ~~~~~V~~~d~ 276 (343)
T 2qe8_A 266 LAHSAIGVITS 276 (343)
T ss_dssp GGGTEEEEEET
T ss_pred cCCCeEEEEEC
Confidence 99999999997
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.96 E-value=0.18 Score=59.89 Aligned_cols=43 Identities=7% Similarity=-0.032 Sum_probs=30.3
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 003221 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~gg 465 (838)
+.+.++..+. .+..-.++..+..|++++.||+++.||..+.+.
T Consensus 466 ~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 466 QAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 4555554332 233346777889999999999999999987543
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.95 E-value=0.051 Score=56.31 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=56.8
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
+|.|..+|. +++.+..+......+..+.++++|.+.+ ++.+|. |..||. . | ..+..+.-
T Consensus 234 ~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~-------g----------~~~~~~~~ 292 (330)
T 3hxj_A 234 DGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-D-------G----------TEKWNFET 292 (330)
T ss_dssp TTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-T-------S----------CEEEEEEC
T ss_pred CCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-C-------C----------cEEEEEEc
Confidence 445666663 4455555555555556677888887665 555455 777774 2 3 24444432
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
+ ...+.++.+.+||+ |.+++.+|.+++...+..
T Consensus 293 ~--~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 293 G--SWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp S--SCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred C--CccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 2 23567788888887 567899999999887654
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.91 E-value=0.043 Score=64.24 Aligned_cols=105 Identities=9% Similarity=-0.013 Sum_probs=69.9
Q ss_pred ceEEEEECCC--CcE-EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 349 GIVVVKDFVT--RAI-ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 349 G~V~VwDl~s--~~~-v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
+.|.|.|..+ ++. +..+..-. ...++.|+|||+++..++.....|.|+|+...... -.|. +........++
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~-~~~~----l~~~~~v~~~v 327 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV-FYEN----ADPRSAVVAEP 327 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH-HHSC----CCGGGGEEECC
T ss_pred CcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc-cccc----cCcccceEEEc
Confidence 4599999998 555 56665433 33579999999999999987778999999631000 0000 00111233444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
.-|. .-.-++|+|||....+.-.+++|-+|+++.
T Consensus 328 ~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 4443 467899999995455677889999999976
No 234
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.87 E-value=0.0025 Score=72.02 Aligned_cols=98 Identities=11% Similarity=-0.005 Sum_probs=73.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec---------CCCEEEEEecCCCcccCCCCCCccccCCcc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~---------dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~ 419 (838)
+.|.|+|..+++++.++..-..| .++|||||++|..+.. .+..|.|+|..+ +
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-------~---------- 159 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-------F---------- 159 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-------C----------
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-------C----------
Confidence 89999999999999999977778 8999999998888863 245699999864 2
Q ss_pred eEEEEEecc-cc----cccEEEEEEccCCCEEEEEeC--CCeEEEEecCCCCC
Q 003221 420 VHLYKLHRG-IT----SATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPFGG 465 (838)
Q Consensus 420 ~~l~~L~RG-~t----~a~I~sIaFSpDg~~Las~S~--dGTVhIw~l~~~gg 465 (838)
+.+.++.-+ .. ...-..++|||||++|.++.. +++|.|.|+.....
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 344444322 00 012346899999999999874 57899999887543
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.84 E-value=0.68 Score=49.33 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=41.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE-EEEeCCCeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVC-MVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~-sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|..+|.++|+.+...+....+. ......+.|.++. ++.|+.+|+.|++.++....
T Consensus 113 g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 679999999999998887765432 1223345555554 56799999999998887653
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.73 E-value=0.22 Score=52.63 Aligned_cols=57 Identities=4% Similarity=-0.007 Sum_probs=47.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+++.+||.++.+.+.++.+...=+.++.+.+.|.++. .++|+++|..|++.+.++..
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred CEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 7899999999999999998765567777777777765 56799999999998887753
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.66 E-value=0.22 Score=52.60 Aligned_cols=96 Identities=9% Similarity=-0.024 Sum_probs=63.7
Q ss_pred CCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 347 NAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH-~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
.++.|.++|..+.+++.+|..- ... ..+++||+.|..+.. +..|.++|..+. +.+..+
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~g-s~~l~viD~~t~-----------------~v~~~I 142 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDG-TSILYEIDPHTF-----------------KLIKKH 142 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECS-SSEEEEECTTTC-----------------CEEEEE
T ss_pred cCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECC-CCeEEEEECCCC-----------------cEEEEE
Confidence 4678999999999999998643 222 335568887777664 556999997541 233343
Q ss_pred ecc---cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 426 HRG---ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 426 ~RG---~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
.-| ..-..+..+.|. |++..+..-.+++|.+-|..+..
T Consensus 143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC
T ss_pred EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc
Confidence 322 222247788888 88655666567888888876543
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.62 E-value=0.055 Score=64.22 Aligned_cols=57 Identities=16% Similarity=-0.007 Sum_probs=42.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCc------------EEEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSS------------VCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~------------V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|.-+|.++|+.+..++.... ...+....+.|.++. ++.|+.+|+.|++.+++...
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence 5688999999999999876531 123444555555554 67899999999999988764
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.46 E-value=0.51 Score=54.79 Aligned_cols=26 Identities=4% Similarity=-0.147 Sum_probs=20.3
Q ss_pred EccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 439 FSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 439 FSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
+...+..|.+++.||+++.|+..+.+
T Consensus 471 ~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 471 LYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEECCCEEEEEcCCCeEEEEECCCCC
Confidence 34456778889999999999987644
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.44 E-value=0.12 Score=61.29 Aligned_cols=57 Identities=23% Similarity=0.078 Sum_probs=41.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCc-----------E-EEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~-----------V-~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|.-+|.++|+.+..++.... + ..+....+.|.++. +++|+.+|+.|++.+++...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 5688999999999998865421 1 12334455566554 77899999999999988764
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.23 E-value=0.84 Score=48.28 Aligned_cols=57 Identities=9% Similarity=-0.128 Sum_probs=48.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+++.+||.++.+.+.++.+...=+.++.+.+.|.++. .++|+++|..|++.+.++..
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 7899999999999999998766577777778777766 56899999999998887763
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.16 E-value=0.25 Score=58.45 Aligned_cols=57 Identities=19% Similarity=-0.051 Sum_probs=41.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE------------EEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSV------------CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V------------~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|.-+|.++|+.+..++..... ..+....+.|.++. +++|+.+|+.|++.+++...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 57889999999999988654211 12333445555554 77899999999999988764
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=95.94 E-value=0.002 Score=70.36 Aligned_cols=93 Identities=9% Similarity=0.089 Sum_probs=41.4
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCC-e-EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSP-I-SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~sp-I-saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
..+|.|..||..+++.+..+..+... + .+.+++.+ .+|++++.+|+ |..||..+ | +.+.
T Consensus 56 s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~-~~v~~g~~dg~-v~a~D~~t-------G----------~~~w 116 (369)
T 2hz6_A 56 PNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSD-GILYMGKKQDI-WYVIDLLT-------G----------EKQQ 116 (369)
T ss_dssp TTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEE-EEEECCC-----------------------
T ss_pred CCCCEEEEEECCCCceeeeeeccCccccccCceEecC-CEEEEEeCCCE-EEEEECCC-------C----------cEEE
Confidence 35788999999888776666544211 1 01112233 45667776564 89999864 4 3444
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 003221 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~ 463 (838)
++..+. .+.++|++..|++++.+++|+.|+....
T Consensus 117 ~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 117 TLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp ----------------------EEEEEEEEEEECCCSSSS
T ss_pred EecCCC------cccccccCCEEEEEecCCEEEEEECCCC
Confidence 443221 2456789999999999999999987654
No 244
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.87 E-value=0.76 Score=50.56 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=64.0
Q ss_pred CceEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 348 AGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 348 ~G~V~VwDl~-------s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
+|.+..|++. +.+.+.+|.-- +.+..+++++....|..+-++ .-|..|+..|. . + .+.+
T Consensus 152 ~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~--~---~-------~~~~ 217 (355)
T 3amr_A 152 EGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPD--G---G-------SNGT 217 (355)
T ss_dssp SSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTT--S---C-------SCCE
T ss_pred CCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcC--C---C-------CCce
Confidence 4677777762 34567777654 467888999988888888885 44555555442 0 0 0113
Q ss_pred EEEEEecccccccEEEEEE--ccCCC-EEEEEe-CCCeEEEEecC
Q 003221 421 HLYKLHRGITSATIQDICF--SHYSQ-WIAIVS-SKGTCHVFVLS 461 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaF--SpDg~-~Las~S-~dGTVhIw~l~ 461 (838)
.+..+-.|.-.+.+-.|+. .+|++ ||++++ .+.+.+||+..
T Consensus 218 ~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 218 VIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 3333322333456888888 67777 777777 66799999986
No 245
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=95.81 E-value=0.034 Score=65.70 Aligned_cols=103 Identities=9% Similarity=0.048 Sum_probs=66.2
Q ss_pred cCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEecCC------------CEEEEEecCCCcccCCCCCC
Q 003221 345 MDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYG------------NNINIFRIMPSCMRSGSGNH 411 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~~v~~-~~aH~spIsaLaFSPdGtlLATAS~dG------------t~IrVwdi~p~~~~~~~G~~ 411 (838)
++....|+|||+.+++.+.. +... ....++|+ ||+.|+.++.++ ..|++|++.+. .
T Consensus 151 G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~------~-- 219 (693)
T 3iuj_A 151 GSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTA------Q-- 219 (693)
T ss_dssp SCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSC------G--
T ss_pred CCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCC------c--
Confidence 34457899999999986543 2221 12567899 999999888763 35888887431 0
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEecCCCC
Q 003221 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSPFG 464 (838)
Q Consensus 412 ~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d----GTVhIw~l~~~g 464 (838)
....++++.. +.+...+.+++|||||++|+..+.+ ..++++++....
T Consensus 220 -----~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 220 -----EDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp -----GGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred -----ccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 0113444321 1012347789999999999776643 368888886543
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.42 E-value=2.6 Score=49.70 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=23.6
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 435 QDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 435 ~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
....+...+..|++++.+|.+++|+.....
T Consensus 461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 334556678899999999999999987544
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.23 E-value=0.36 Score=56.55 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=58.9
Q ss_pred cCCCceEEEEECCCCc------------EEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCc
Q 003221 345 MDNAGIVVVKDFVTRA------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (838)
Q Consensus 345 g~~~G~V~VwDl~s~~------------~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~ 412 (838)
...+.+|.|+|+.+.+ ++.++..-.+| ..++|+|+| .+.+...-+..|-+||+.... +...|.
T Consensus 295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP-~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~-~~~~g~-- 369 (595)
T 1fwx_A 295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP-LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAI-RAYAGE-- 369 (595)
T ss_dssp CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE-EEEEECTTS-EEEEEETTTTEEEEEEHHHHH-HHHHTC--
T ss_pred CCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc-ceEEECCCC-eEEEEEecCCcEEEEEhhHhh-hhhccc--
Confidence 3456789999998653 55666554444 678999999 677776667779999985310 000010
Q ss_pred cccCCcceEEEEEecccccccE---EEEEEccCCCEEEEEeC
Q 003221 413 YDWNSSHVHLYKLHRGITSATI---QDICFSHYSQWIAIVSS 451 (838)
Q Consensus 413 ~~~~~~~~~l~~L~RG~t~a~I---~sIaFSpDg~~Las~S~ 451 (838)
.....+.++.-+...... ..+.++|||+||.++..
T Consensus 370 ----~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 370 ----KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp ----SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ----ccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 011345555544321111 12356899999988653
No 248
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.00 E-value=4.3 Score=42.78 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=56.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC-CEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+.|.++|+........+.........|+++|++..|.-+.... ..|.++++. |. ....+.
T Consensus 98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--------G~----------~~~~~~ 159 (316)
T 1ijq_A 98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV 159 (316)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEEE
T ss_pred CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--------CC----------CeEEEE
Confidence 35677777765443333333334568999999766665555532 456666652 31 222222
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~ 461 (838)
.. .-.....|+|+++++.|..+. ..++|..++++
T Consensus 160 ~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 160 TE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 11 112467899999887776554 55688888875
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.82 E-value=4.5 Score=42.07 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=47.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEeCCCeEEEEe-CCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~s~~iLaV~l-~~~I~IwD~~t~e~l~tL~t 229 (838)
+++.+||.++.+.+.++.+...=+.++.+.+.|.++. .++|+++|..|++.+.++..
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 7899999999999999998765577777777666665 45799999999998887763
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.77 E-value=2 Score=49.79 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=41.3
Q ss_pred CEEEEEECCCCeEEEEEeCCC-----cEE-EEEeCCCeEEEEe-------CCeEEEEECCCCceeeEEeec
Q 003221 173 TAVRFYSFQSHCYEHVLRFRS-----SVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY 230 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s-----~V~-sV~~s~~iLaV~l-------~~~I~IwD~~t~e~l~tL~t~ 230 (838)
+.|..+|.++|+.+...+... .+. +-....+.|.++. ++.|+.||+.|++.+++....
T Consensus 125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 679999999999998886543 221 1112245555554 468999999999999988753
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=94.66 E-value=4.2 Score=41.04 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=44.9
Q ss_pred CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003221 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~ 449 (838)
.....|+|+|+|..|..+....+.|.++|.. | ..+..+..+. .....|++ |+.+|.++
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~--------g----------~~~~~~~~~~--~~P~gi~~--d~~~lyva 224 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--------Q----------PGRRKVLEGL--QYPFAVTS--YGKNLYYT 224 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------E----------EEEEEEEECC--CSEEEEEE--ETTEEEEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecC--------C----------CceEEEecCC--CCceEEEE--eCCEEEEE
Confidence 3467899999988887777767789999874 2 1222222221 12456665 45555555
Q ss_pred e-CCCeEEEEecCCC
Q 003221 450 S-SKGTCHVFVLSPF 463 (838)
Q Consensus 450 S-~dGTVhIw~l~~~ 463 (838)
. ..+.|.+++....
T Consensus 225 ~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 225 DWKTNSVIAMDLAIS 239 (267)
T ss_dssp ETTTTEEEEEETTTT
T ss_pred ECCCCeEEEEeCCCC
Confidence 4 5578888886543
No 252
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=94.34 E-value=0.24 Score=51.61 Aligned_cols=84 Identities=11% Similarity=-0.069 Sum_probs=55.2
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 346 ~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
...+.|..||. +++ ...+..+...+..++|+|+|+++++... +..|.+|+.. |. ...+...
T Consensus 64 ~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~-~~~v~~~~~~--------g~--------~~~~~~~ 124 (305)
T 3dr2_A 64 LVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHG-RRAITRSDAD--------GQ--------AHLLVGR 124 (305)
T ss_dssp TTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETT-TTEEEEECTT--------SC--------EEEEECE
T ss_pred CCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECC-CCEEEEECCC--------CC--------EEEEEec
Confidence 34678999998 444 4566667778999999999997765544 3458888762 21 1222222
Q ss_pred ecccccccEEEEEEccCCCEEEE
Q 003221 426 HRGITSATIQDICFSHYSQWIAI 448 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las 448 (838)
..+.....+.+++|++||+..++
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEE
T ss_pred cCCCccCCCCCEEECCCCCEEEe
Confidence 22222224778999999998876
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.82 E-value=1.7 Score=50.52 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=53.6
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..|.|..||+.+++.+.+++.+. ++..-.+...|.+++.++.||. ++.||..+ | +.+.+++
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~-l~A~D~~t-------G----------~~lW~~~ 524 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAKS-------G----------KELWKFQ 524 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETTT-------C----------CEEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCc-EEEEECCC-------C----------CEEEEec
Confidence 46899999999999887776442 3322122224667888888775 99999864 5 5777776
Q ss_pred cccccccEE--EEEEccCCC-EEEEEe
Q 003221 427 RGITSATIQ--DICFSHYSQ-WIAIVS 450 (838)
Q Consensus 427 RG~t~a~I~--sIaFSpDg~-~Las~S 450 (838)
-+. .|. -+.|..||+ |+++.+
T Consensus 525 ~~~---g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 525 TGS---GIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp CSS---CCCSCCEEEEETTEEEEEEEE
T ss_pred CCC---CcccCceEEEECCEEEEEEEc
Confidence 432 222 266778887 555443
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.74 E-value=3 Score=48.86 Aligned_cols=59 Identities=15% Similarity=0.040 Sum_probs=42.8
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcE-----------------------------------------EEEEeCCCeEEEEeC
Q 003221 172 PTAVRFYSFQSHCYEHVLRFRSSV-----------------------------------------CMVRCSPRIVAVGLA 210 (838)
Q Consensus 172 p~tV~IWDl~tg~~V~tL~f~s~V-----------------------------------------~sV~~s~~iLaV~l~ 210 (838)
++.|.-+|.++|+.+..+...... .++....++|.++..
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g 260 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence 478999999999999888654322 123334456666654
Q ss_pred -----------------CeEEEEECCCCceeeEEeec
Q 003221 211 -----------------TQIYCFDALTLENKFSVLTY 230 (838)
Q Consensus 211 -----------------~~I~IwD~~t~e~l~tL~t~ 230 (838)
..|+.+|+.|++.++...+.
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred CCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 37999999999999887653
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=92.92 E-value=10 Score=39.45 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=42.0
Q ss_pred eEEEEECCCCCEEEEEecC---------CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe--cccccccEEEEEEc
Q 003221 372 ISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH--RGITSATIQDICFS 440 (838)
Q Consensus 372 IsaLaFSPdGtlLATAS~d---------Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~--RG~t~a~I~sIaFS 440 (838)
...|+++++|.+.++.... ...|.+|| +. | +.+..+. .|.....+.++++
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d--~~------G----------~~~~~~~~~~g~~~~~~~~~~~- 291 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFD--EF------G----------NILEVIPLPPPFAGEHFEQIQE- 291 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEEC--TT------S----------CEEEEEECCTTTTTSCCCEEEE-
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEEC--CC------C----------CEEEEEECCCCCccccceEEEE-
Confidence 5779999999988776541 12244444 32 3 2333332 3321234677777
Q ss_pred cCCCEEEEEeCCCeEEEEecCCC
Q 003221 441 HYSQWIAIVSSKGTCHVFVLSPF 463 (838)
Q Consensus 441 pDg~~Las~S~dGTVhIw~l~~~ 463 (838)
.+++..++...++.|.+|++...
T Consensus 292 ~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 292 HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp ETTEEEEECSSCSEEEEEEC---
T ss_pred eCCEEEEeecCCCceEEEecccc
Confidence 46665555556788999988643
No 256
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=92.91 E-value=2.2 Score=43.80 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=57.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
+.|..+| .+++.+..+..+...+.++.++++|++.+.. .+|. |..||.. | ..+..+..+
T Consensus 195 ~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-~~~g-l~~~~~~--------g----------~~~~~~~~~ 253 (330)
T 3hxj_A 195 DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTS-LDGH-LYAINPD--------G----------TEKWRFKTG 253 (330)
T ss_dssp SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEE-TTTE-EEEECTT--------S----------CEEEEEECS
T ss_pred CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEc-CCCe-EEEECCC--------C----------CEeEEeeCC
Confidence 6788888 6777777777666779999999999877644 4354 6666642 3 244444332
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
. ..+.++.+.+++ .|.+++.+|.++.|+
T Consensus 254 ~--~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 254 K--RIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp S--CCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred C--CccccceEcCCC-eEEEecCCCCEEEEC
Confidence 1 123445666666 466788888888886
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=91.94 E-value=14 Score=42.72 Aligned_cols=56 Identities=9% Similarity=-0.098 Sum_probs=40.5
Q ss_pred EEEEEECCCCeEEEEEeCCCcE----------EEEEeCCCeEEEE-eCCeEEEEECCCCceeeEEee
Q 003221 174 AVRFYSFQSHCYEHVLRFRSSV----------CMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 174 tV~IWDl~tg~~V~tL~f~s~V----------~sV~~s~~iLaV~-l~~~I~IwD~~t~e~l~tL~t 229 (838)
.|.-+|.++|+.+..++..... ..+....+.|.++ .++.|+.+|+.|++.+++...
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4888999999999988764321 2223344555554 577999999999999988654
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=91.56 E-value=17 Score=39.47 Aligned_cols=92 Identities=8% Similarity=-0.043 Sum_probs=51.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC-CEEEEEecCCCcccCCCCCCccccCCcceEEEEE-ec
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HR 427 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L-~R 427 (838)
.|.+.|+........+.........|+++|++..|.-+.... ..|..++.. |. ....+ ..
T Consensus 182 ~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~----------~~~~~~~~ 243 (386)
T 3v65_B 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS----------GRRIIADT 243 (386)
T ss_dssp EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------SCEEEECS
T ss_pred eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------CC----------CcEEEEEC
Confidence 455555443322222333334568899999766666666544 556666652 31 11122 12
Q ss_pred ccccccEEEEEEccCCCEEEEE-eCCCeEEEEecC
Q 003221 428 GITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLS 461 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~-S~dGTVhIw~l~ 461 (838)
+. ..-..|+|+|++..|..+ +..+.|..++++
T Consensus 244 ~~--~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 244 HL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SC--SCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CC--CCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 22 246789999887776655 445667777764
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.32 E-value=6.2 Score=45.99 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=30.5
Q ss_pred CEEEEEECCCCeEEEEEeCC---CcEEEEEe-CCCeEEEEeC-------CeEEEEECCCCc
Q 003221 173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRC-SPRIVAVGLA-------TQIYCFDALTLE 222 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~---s~V~sV~~-s~~iLaV~l~-------~~I~IwD~~t~e 222 (838)
..+.+||..+++-...-..+ ..-.++.+ +.+++++|.. ..+.+||+.+.+
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 36999999988654322222 22234455 5667777651 358899988754
No 260
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=91.24 E-value=20 Score=39.22 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=56.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec-CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE-
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL- 425 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~-dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L- 425 (838)
.+.|.+.|+........+.........|+++|.+.+|.-+.. +...|..+++. |. ....+
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--------G~----------~~~~~~ 241 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV 241 (400)
T ss_dssp TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--------SC----------SCEEEE
T ss_pred CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--------CC----------ccEEEE
Confidence 356777777655444444433445689999997656655553 22347776662 31 11122
Q ss_pred ecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 003221 426 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (838)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~ 461 (838)
..+. .....|+|++++++|..+. ..++|..++++
T Consensus 242 ~~~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 242 TENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp CSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ECCC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 1221 2478899999888877664 45678888765
No 261
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.19 E-value=24 Score=40.10 Aligned_cols=196 Identities=11% Similarity=0.137 Sum_probs=113.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe-CCCeEEEEeCCeEEEEECCCCc-eeeEEeecCCcccCCCCcccccccccee
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~-s~~iLaV~l~~~I~IwD~~t~e-~l~tL~t~p~p~~~~~~~~~~~~g~g~~ 250 (838)
+++.|+|+.+.+.++...++..|.==++ +++.|+...+..||-|++.... ..+-+.-+++- +
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L--------------~-- 149 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL--------------A-- 149 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGG--------------T--
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhc--------------c--
Confidence 7899999999999999999887755555 7889999999999999986422 22222223221 0
Q ss_pred EEcccEEEEeCCCceeecCCCCCCcccCCCCCCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCcc
Q 003221 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (838)
Q Consensus 251 Alspr~LAys~~~~~l~~~G~vs~q~l~~~~~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s 330 (838)
+...+-|..+.-.-| -+..|+.
T Consensus 150 --~~QIInY~~d~~~kW------------------------------------~~l~GI~-------------------- 171 (494)
T 1bpo_A 150 --GCQIINYRTDAKQKW------------------------------------LLLTGIS-------------------- 171 (494)
T ss_dssp --TCEEEEEEECTTSSE------------------------------------EEEEEEE--------------------
T ss_pred --cceEEEEEECCCCCe------------------------------------EEEEeec--------------------
Confidence 113333433211101 0111100
Q ss_pred CCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC---CCEEEEEec--CCCEEEEEecCCCccc
Q 003221 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---GTLLVTASV--YGNNINIFRIMPSCMR 405 (838)
Q Consensus 331 ~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPd---GtlLATAS~--dGt~IrVwdi~p~~~~ 405 (838)
...+.-.|.+++|..+.+ .-..+.+|...-..+.+.-+ .++++.|.. .|..++|-++.....
T Consensus 172 -----------~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~- 238 (494)
T 1bpo_A 172 -----------AQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT- 238 (494)
T ss_dssp -----------EETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT-
T ss_pred -----------ccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc-
Confidence 001223688999998754 45677888654433333321 246666655 356799999832100
Q ss_pred CCCCCCccccCCcceEEEEEec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 003221 406 SGSGNHKYDWNSSHVHLYKLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (838)
Q Consensus 406 ~~~G~~~~~~~~~~~~l~~L~R---G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~~g 464 (838)
|. ..+ .++..++.. ....- -.++..|+.=..+..-+.-|.+|+||+++..
T Consensus 239 ---~~--~~f---~kk~vdv~fppe~~~DF-Pvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 239 ---GN--QPF---PKKAVDVFFPPEAQNDF-PVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp ---TC--CCC---CCEEEECCCCTTSTTCC-EEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred ---CC--CCc---cceeeeeeCCcccccCc-eeEEEecccCCEEEEEecCceEEEEecccce
Confidence 10 001 022223221 11111 3457788888889999999999999998754
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=90.57 E-value=20 Score=38.23 Aligned_cols=93 Identities=8% Similarity=-0.043 Sum_probs=53.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC-CEEEEEecCCCcccCCCCCCccccCCcceEEEEE-e
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-H 426 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L-~ 426 (838)
+.|.+.|+........+.........|+++|.+..|.-+.... ..|..++.. |. ....+ .
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------G~----------~~~~~~~ 199 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS----------GRRIIAD 199 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------SCEESCC
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------CC----------CcEEEEE
Confidence 4566666654432223333334568999999666665555534 557666652 31 11111 1
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~ 461 (838)
.+. ..-..|+|+|++..|..+. ..++|..++++
T Consensus 200 ~~~--~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 200 THL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCC--CCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 121 2467899999877766554 45678888765
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=90.27 E-value=14 Score=38.27 Aligned_cols=69 Identities=9% Similarity=0.029 Sum_probs=44.4
Q ss_pred EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003221 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 373 saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d 452 (838)
+.| +|+|+.|..+....+.|.+|++... |. . .....+..+ .....|++++||+..++....
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~------g~----~-~~~~~~~~~------~~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDST------DK----P-GEPEIFVEQ------TNIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTT------SC----B-CCCEEEEES------CCCSSEEEBTTCCEEEECBTT
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCC------CC----C-CccEEEecc------CCCCCeEECCCCCEEEEeCCC
Confidence 445 8899877777776777999998531 11 0 001112221 124568999999987777777
Q ss_pred CeEEEEec
Q 003221 453 GTCHVFVL 460 (838)
Q Consensus 453 GTVhIw~l 460 (838)
+.|.+|+.
T Consensus 233 ~~V~~~~~ 240 (306)
T 2p4o_A 233 NSVVRIAP 240 (306)
T ss_dssp CCEEEECT
T ss_pred CeEEEECC
Confidence 88888874
No 264
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=89.75 E-value=5.6 Score=40.08 Aligned_cols=95 Identities=7% Similarity=0.050 Sum_probs=60.2
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
.+.|.++|+........+.........|+|+|++..|..+......|.+++.. |. ....+ +..
T Consensus 57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~--------g~-------~~~~~--~~~ 119 (267)
T 1npe_A 57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD--------GT-------QRRVL--FDT 119 (267)
T ss_dssp TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC-------SCEEE--ECS
T ss_pred CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC--------CC-------CEEEE--EEC
Confidence 56899999876554333333334568999999877677676656678888874 21 00111 112
Q ss_pred ccccccEEEEEEccCCCEEEEEeC---CCeEEEEecC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLS 461 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~---dGTVhIw~l~ 461 (838)
+. .....|+|+|++.+|..+.. .+.|.+++++
T Consensus 120 ~~--~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 120 GL--VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp SC--SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CC--CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 21 24688999998777666554 3577777765
No 265
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=89.34 E-value=28 Score=38.07 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=43.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe-CCCeEEEEeCCeEEEEECCC
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALT 220 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~-s~~iLaV~l~~~I~IwD~~t 220 (838)
+++.++|+.+.+.++...++..|.==++ +++.|+...+..||-|++..
T Consensus 87 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~ 135 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 135 (365)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESST
T ss_pred CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccC
Confidence 6899999999999999999988876666 77899999999999999865
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=89.29 E-value=1 Score=53.74 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=57.8
Q ss_pred CCceEEEEECCCC-cEEE-EeccCCCCeEEEEECCCCCEEEEEecCC----CEEEEEecCCCcccCCCCCCccccCCcce
Q 003221 347 NAGIVVVKDFVTR-AIIS-QFKAHTSPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (838)
Q Consensus 347 ~~G~V~VwDl~s~-~~v~-~~~aH~spIsaLaFSPdGtlLATAS~dG----t~IrVwdi~p~~~~~~~G~~~~~~~~~~~ 420 (838)
....|.|+|+.++ +.+. .+.. ....++|+|||+.|+-.+.+. ..|.++++.. +. ....
T Consensus 199 ~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt-------~~------~~~~ 262 (751)
T 2xe4_A 199 EVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK-------LQ------SEDV 262 (751)
T ss_dssp SCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS-------CG------GGCE
T ss_pred ceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC-------Cc------hhcE
Confidence 3457999999988 6321 1211 134688999998888777642 2355566521 10 0112
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCC---eEEEEecCC
Q 003221 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (838)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dG---TVhIw~l~~ 462 (838)
.+++. . ......++.|||||++|+..+.++ .|+++++..
T Consensus 263 lv~~~--~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 263 CLYEE--H-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEEC--C-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEec--C-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 34432 1 122356889999999999877443 366666654
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=88.29 E-value=29 Score=40.43 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=40.1
Q ss_pred CEEEEEEC-CCCeEEEEEeCCCcE------------EEEEe--CCCe----EEEE-eCCeEEEEECCCCceeeEEee
Q 003221 173 TAVRFYSF-QSHCYEHVLRFRSSV------------CMVRC--SPRI----VAVG-LATQIYCFDALTLENKFSVLT 229 (838)
Q Consensus 173 ~tV~IWDl-~tg~~V~tL~f~s~V------------~sV~~--s~~i----LaV~-l~~~I~IwD~~t~e~l~tL~t 229 (838)
+.|.-+|. ++|+.+...+..... ..+.. ..+. |.++ .+++|+.+|+.|++.+++...
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 56888999 999999988764321 22344 3333 5555 567899999999999887653
No 268
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=87.82 E-value=55 Score=39.50 Aligned_cols=95 Identities=17% Similarity=0.094 Sum_probs=57.5
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCC-CEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+.|.+.|+........+.........|+++|.+.+|.-+.... ..|.++++. |. ....+.
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--------G~----------~~~~lv 553 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV 553 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--------CC----------ceEEEE
Confidence 45788888875554444444445578999999855665555422 457776663 31 222332
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S-~dGTVhIw~l~ 461 (838)
.+. -.....|++.+++.+|..+. ..++|..++++
T Consensus 554 ~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 554 TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 211 12578899998888777664 34567777664
No 269
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=87.16 E-value=25 Score=44.30 Aligned_cols=95 Identities=9% Similarity=0.116 Sum_probs=58.2
Q ss_pred ceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec
Q 003221 349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (838)
Q Consensus 349 G~V~VwDl~s~~~v~-~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R 427 (838)
..|+|||+...+.+. .-..+. .|..+...-.|.+++.|+.... |.++...+. ...+..+-|
T Consensus 904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~----------------~~~L~~~a~ 965 (1158)
T 3ei3_A 904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPM----------------EGNFEEIAR 965 (1158)
T ss_dssp TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETT----------------TTEEEEEEE
T ss_pred CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC----------------CCeEEEEEe
Confidence 467888877554332 111111 1333333335778888887543 444433221 036777777
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 428 G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
-.....++++.|=.|+ .++.+..+|.++|+..++
T Consensus 966 D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 6666679999997665 567788999999999876
No 270
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=86.59 E-value=19 Score=39.46 Aligned_cols=185 Identities=11% Similarity=0.166 Sum_probs=107.9
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
.+++|+|+.+++.+..+.-. .+|..=.|--+- .|+--. ++.+.-|++... +...++++.+.-
T Consensus 87 ~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT--~taVyHWs~~~~--------------s~P~kvFdR~~~ 148 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHSS 148 (365)
T ss_dssp TEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEE--SSEEEEEESSTT--------------CCCEEEEECCGG
T ss_pred CeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEc--CCcEEEEcccCC--------------CCCceeeecchh
Confidence 57999999998877666543 577777775543 444444 346899998521 112455554333
Q ss_pred cccccEEEEEEccCCCEEEEEeCC-------CeEEEEecCCCCCccccccCCCCCCCCcccCccCCCcccCCCCcccccc
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSK-------GTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQC 501 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~d-------GTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p~~~lp~~~~s~~~~~q~~ 501 (838)
..++.|.+-.-++|.+|++..+-. |.+.+|.++. +....+++|... +.++.
T Consensus 149 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~---------------------F~~~~ 206 (365)
T 2xzh_A 149 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS---------------------FAQFK 206 (365)
T ss_dssp GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEE---------------------EEEEC
T ss_pred cccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeee---------------------eEEEe
Confidence 345678889999999999887652 7789999865 445567787421 11111
Q ss_pred cC-CCCCeeeeeee----------eeeecCCCcccccccccccccCcccccccceeeecccCcccccccccccc-CCccc
Q 003221 502 VL-PPPPVTLSVVS----------RIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT-NSLEH 569 (838)
Q Consensus 502 ~~-~~~~~~l~~v~----------rI~~~~~~w~~~~~~~~~~at~~~~~ps~~v~~~F~~~~~~~~~~~~~~~-~~~~~ 569 (838)
++ .+.|..|-... =|+.+.. .++....+. ...++|-..-+...-|+...+ ++-.=
T Consensus 207 ~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~------------~~~~~~f~k-k~vdi~fppea~~DFPVamqvs~kygv 273 (365)
T 2xzh_A 207 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTP------------PTGNQPFPK-KAVDVFFPPEAQNDFPVAMQISEKHDV 273 (365)
T ss_dssp CTTCSSCEEEEEEEEEETTEEEEEEEECSSC------------CTTCCCCCC-EEEEECCCTTCTTCCEEEEEEETTTTE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCC------------CCCCCCccc-ccceeeCCccccCCceEEEEecccCCE
Confidence 10 01111111111 1122111 011112222 256777666555555555433 44566
Q ss_pred EEEEcCCceEEEEeccc
Q 003221 570 LLVYTPSGYVVQHELLP 586 (838)
Q Consensus 570 LlV~s~~G~l~~Y~L~p 586 (838)
++|.+--|+++.|+|..
T Consensus 274 iyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 274 VFLITKYGYIHLYDLET 290 (365)
T ss_dssp EEEEETTSEEEEEETTT
T ss_pred EEEEeCCcEEEEEEccc
Confidence 89999999999999963
No 271
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=86.34 E-value=59 Score=38.37 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=57.1
Q ss_pred CCceEEEEECCCCcEEEEecc--------CCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCc
Q 003221 347 NAGIVVVKDFVTRAIISQFKA--------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~a--------H~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~ 418 (838)
..|-|..||..+++....... ....|.+|+.+++|++|-.|..++. |.+||... +
T Consensus 375 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~-------~--------- 437 (795)
T 4a2l_A 375 NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNS-------G--------- 437 (795)
T ss_dssp SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTT-------C---------
T ss_pred CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCC-------C---------
Confidence 445688888877654322211 2357999999999993444555343 78888743 2
Q ss_pred ceEEEEEec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 419 HVHLYKLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 419 ~~~l~~L~R---G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
....+.. +.....|.+|...++|+..+.+ .+| +.+|+..
T Consensus 438 --~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~ 479 (795)
T 4a2l_A 438 --QVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPE 479 (795)
T ss_dssp --CEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETT
T ss_pred --cEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCC
Confidence 2222221 1123469999999998855444 454 7777754
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=85.83 E-value=18 Score=40.08 Aligned_cols=72 Identities=11% Similarity=-0.039 Sum_probs=44.3
Q ss_pred eEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE-E
Q 003221 372 ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-V 449 (838)
Q Consensus 372 IsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las-~ 449 (838)
...++++| +|.++++-.. .+.|.+|+... + .....+..+. ...-..|+|+|||++|.+ -
T Consensus 228 p~giavdp~~g~lyv~d~~-~~~V~~~~~~~-------~----------~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWN-AGQVFRYDFTT-------Q----------ETTPLFTIQD-SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp CCCEEECTTTCCEEEEETT-TTEEEEEETTT-------T----------EEEEEEECSS-SSCCEEEEECTTSSEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECC-CCEEEEEECCC-------C----------cEEEEEEcCC-CCcceeEEEcCCCCEEEEEE
Confidence 46788999 7776665444 55588888642 1 1111111221 123578999999995544 4
Q ss_pred eCCCeEEEEecCC
Q 003221 450 SSKGTCHVFVLSP 462 (838)
Q Consensus 450 S~dGTVhIw~l~~ 462 (838)
...+.|++|+.+.
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 5677888888754
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=85.83 E-value=5 Score=41.67 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=48.5
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003221 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (838)
Q Consensus 359 ~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIa 438 (838)
.+.+..|..+ .....++|+|+|+++++-.. +..|..||.. | .....+..+ .....|+
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~-~~~I~~~d~~--------g----------~~~~~~~~~---~~p~gia 78 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHE-VGEIVSITPD--------G----------NQQIHATVE---GKVSGLA 78 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETT-TTEEEEECTT--------C----------CEEEEEECS---SEEEEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCC-CCeEEEECCC--------C----------ceEEEEeCC---CCceeEE
Confidence 4556677654 44678999999997776655 4457777652 2 122222222 3588999
Q ss_pred EccCCCEEEEEeCCCeEEEEec
Q 003221 439 FSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 439 FSpDg~~Las~S~dGTVhIw~l 460 (838)
|++||+.+++.......+|+.+
T Consensus 79 ~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 79 FTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEeccCCcceEEEE
Confidence 9999997666544333344443
No 274
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=85.67 E-value=64 Score=38.10 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=55.7
Q ss_pred ceEEEEECCCCcEEEEec-----cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 349 GIVVVKDFVTRAIISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~-----aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+.|.+||..+++.. .+. .+...|.++..+++|++.+... .| +.+||... + ...
T Consensus 427 ~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G--l~~~~~~~-------~-----------~~~ 484 (795)
T 4a2l_A 427 GGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA--LVRFNPEQ-------R-----------SFT 484 (795)
T ss_dssp TEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEES-SC--EEEEETTT-------T-----------EEE
T ss_pred CceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc--eeEEeCCC-------C-----------eEE
Confidence 44677777665532 232 2345799999999999887654 34 77888642 1 222
Q ss_pred EEec-----ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 003221 424 KLHR-----GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 424 ~L~R-----G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~~ 462 (838)
.+.. +.....|.+|...++|+..+.+. +| +.+|+...
T Consensus 485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~ 526 (795)
T 4a2l_A 485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEG 526 (795)
T ss_dssp ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEET
T ss_pred EccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCC
Confidence 2211 22234699999999998655444 44 77777643
No 275
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=85.39 E-value=21 Score=40.55 Aligned_cols=185 Identities=11% Similarity=0.161 Sum_probs=106.0
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
.+++|+|+.+++.+..+.-. .+|..=.|=-+ +.|+--. ++.+.-|++... +...++++.+.-
T Consensus 86 ~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~lVT--~taVyHWsi~~~--------------s~P~kvFdR~~~ 147 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHSS 147 (494)
T ss_dssp TEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEEEEC--SSEEEEEESSSS--------------CCCEEEEECCGG
T ss_pred CeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEEEEc--CCeeEEecccCC--------------CCchhheecchh
Confidence 57999999998877666543 35655555333 3454444 356999998521 112455554333
Q ss_pred cccccEEEEEEccCCCEEEEEeC-------CCeEEEEecCCCCCccccccCCCCCCCCcccCccCCCcccCCCCcccccc
Q 003221 429 ITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQC 501 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~-------dGTVhIw~l~~~gg~~~~~~H~~~~~~~~~~p~~~lp~~~~s~~~~~q~~ 501 (838)
..++.|.+-.-++|.+|++..+- .|.+.+|.++. +....+++|... +.++.
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~---------------------F~~~~ 205 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS---------------------FAQFK 205 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEE---------------------EEEEE
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeee---------------------eEEEe
Confidence 34567888999999999987654 37789999875 455667788421 11111
Q ss_pred cC-CCCCeeeeee----------eeeeecCCCcccccccccccccCcccccccceeeecccCcccccccccccc-CCccc
Q 003221 502 VL-PPPPVTLSVV----------SRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT-NSLEH 569 (838)
Q Consensus 502 ~~-~~~~~~l~~v----------~rI~~~~~~w~~~~~~~~~~at~~~~~ps~~v~~~F~~~~~~~~~~~~~~~-~~~~~ 569 (838)
++ .+.|.+|-.. .=|+.+.. .++...++- ...++|-..-+....|+...+ ++-.=
T Consensus 206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~------------~~~~~~f~k-k~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTP------------PTGNQPFPK-KAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp CTTCSSEEEEEEEEECSTTCCEEEEEECSCC------------CTTCCCCCC-EEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCC------------ccCCCCccc-eeeeeeCCcccccCceeEEEecccCCE
Confidence 10 0111111111 11122111 011112222 256777766565555555433 44566
Q ss_pred EEEEcCCceEEEEeccc
Q 003221 570 LLVYTPSGYVVQHELLP 586 (838)
Q Consensus 570 LlV~s~~G~l~~Y~L~p 586 (838)
++|.+--|+++.|+|..
T Consensus 273 iyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLET 289 (494)
T ss_dssp EEEEETTSEEEEEETTT
T ss_pred EEEEecCceEEEEeccc
Confidence 89999999999999963
No 276
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=85.14 E-value=6.7 Score=44.27 Aligned_cols=108 Identities=12% Similarity=0.160 Sum_probs=68.5
Q ss_pred CceEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 348 AGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH----~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+..||.-++.....-+.++.- -..|..|..||+|++||-.+. +.|.|-.+-...... .+ ... ....+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~-~~---~~~-~~~~q~~ 112 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYSNV-ED---VSI-QDAFQIF 112 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS--SEEEEEECCTTCSCC-CC---HHH-HHTTEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC--CeEEEEEecCccccC-cc---ccc-cccccee
Confidence 456777777643333333321 236788999999999999987 469999983121100 00 000 0112334
Q ss_pred EEeccc----ccccEEEEEEccC---CCEEEEEeCCCeEEEEecCC
Q 003221 424 KLHRGI----TSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 424 ~L~RG~----t~a~I~sIaFSpD---g~~Las~S~dGTVhIw~l~~ 462 (838)
.++-|. ....|..+.|+|- +..|++-..|++|++|++..
T Consensus 113 ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 113 HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 444442 2357999999986 55899999999999999986
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=84.60 E-value=48 Score=35.79 Aligned_cols=92 Identities=10% Similarity=-0.042 Sum_probs=51.5
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
+.|..+|.........+...-..-+.|+|+|++..|.-+....+.|..+|+. |. .... -+..+
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--------G~--------~~~~-~~~~~ 287 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--------GS--------HRKA-VISQG 287 (386)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--------SC--------SCEE-EECSS
T ss_pred CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--------CC--------eeEE-EEECC
Confidence 4455555543322222222233457899999888888888777778888863 21 0111 11122
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l 460 (838)
. .....|++ .++..+.+-...+.|..++.
T Consensus 288 ~--~~P~giav-~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 288 L--PHPFAITV-FEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp C--SSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred C--CCceEEEE-ECCEEEEeeCCCCeEEEEEC
Confidence 1 23677888 34444555556677776663
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=83.60 E-value=48 Score=34.97 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=53.1
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec-CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE-e
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-H 426 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~-dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L-~ 426 (838)
+.|.++|+........+......-..|+++|.+.+|.-+.. ....|..++.. |. ....+ .
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~----------~~~~~~~ 162 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--------GS----------SRFIIIN 162 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--------SC----------SCEEEEC
T ss_pred CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--------CC----------CeEEEEE
Confidence 46777777543322223233345589999997555555553 23446666552 31 11122 1
Q ss_pred cccccccEEEEEEccCCCEEEEE-eCCCeEEEEecC
Q 003221 427 RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLS 461 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~-S~dGTVhIw~l~ 461 (838)
.+. ..-..|+|+++++.|..+ +..+.|..++++
T Consensus 163 ~~l--~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 163 SEI--YWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCC--CCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 222 246789999987776665 445678888875
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=82.96 E-value=62 Score=35.76 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=58.3
Q ss_pred CceEEEEECCCCcEEEEe-ccCCCC-eEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE
Q 003221 348 AGIVVVKDFVTRAIISQF-KAHTSP-ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~-~aH~sp-IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L 425 (838)
.+.|..+|..++.....+ .....+ -..|+|+|+|..|..+....+.|+.++.... .+. ....+.+
T Consensus 249 ~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~-----~~~--------~~~~~~~ 315 (433)
T 4hw6_A 249 HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE-----TGK--------LAVPYIV 315 (433)
T ss_dssp CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT-----TCC--------BCCCEEE
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC-----Ccc--------cCcEEEE
Confidence 567888888766652333 222222 2469999999977777776778888886421 010 0000111
Q ss_pred e-----ccc--------ccccEEEEEE---------ccCCCEEEEEeCCCeEEEEe
Q 003221 426 H-----RGI--------TSATIQDICF---------SHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 426 ~-----RG~--------t~a~I~sIaF---------SpDg~~Las~S~dGTVhIw~ 459 (838)
. .|. .-..-..|+| .++|...++-+..+.|++++
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 0 010 0013677999 77887777777777787775
No 280
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=82.90 E-value=22 Score=45.92 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=42.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe-CCCeEEEEeCCeEEEEECCC
Q 003221 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALT 220 (838)
Q Consensus 173 ~tV~IWDl~tg~~V~tL~f~s~V~sV~~-s~~iLaV~l~~~I~IwD~~t 220 (838)
+++.|+|+.+.+.++...++..|.==++ +++.|+...+..|+-|++..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 7899999999999999999888765565 77899999999999999864
No 281
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=82.68 E-value=60 Score=35.47 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=23.2
Q ss_pred CeEEEEE--CCCCC-EEEEEecCCCEEEEEecC
Q 003221 371 PISALCF--DPSGT-LLVTASVYGNNINIFRIM 400 (838)
Q Consensus 371 pIsaLaF--SPdGt-lLATAS~dGt~IrVwdi~ 400 (838)
.+..|++ .++|+ +|+.+|+....+.|||..
T Consensus 230 DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 230 DIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 5777877 56777 788888766689999985
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=81.68 E-value=1.6 Score=52.23 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=47.1
Q ss_pred cCCC-CeEEEEEC-CCCCEEEEEecC-C---CEEEEEecCCCcccCCCC-CCccccCCcceEEEEEecccccccEEEEEE
Q 003221 367 AHTS-PISALCFD-PSGTLLVTASVY-G---NNINIFRIMPSCMRSGSG-NHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (838)
Q Consensus 367 aH~s-pIsaLaFS-PdGtlLATAS~d-G---t~IrVwdi~p~~~~~~~G-~~~~~~~~~~~~l~~L~RG~t~a~I~sIaF 439 (838)
+|.. .+...+|| |||++||-+... | ..|+|+|+.. | . .....+.. ...+++|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~-------g~~---------~l~~~~~~-----~~~~~~W 228 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD-------PSQ---------TIADKVSG-----TNGEIVW 228 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC-------TTC---------CCCCCEEE-----ECSCCEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC-------CCE---------eCCccccC-----ceeeEEE
Confidence 3554 68899999 999999866543 3 2599999853 2 1 00001111 1246889
Q ss_pred ccCCCEEEEEeCCC-----eEEEEecC
Q 003221 440 SHYSQWIAIVSSKG-----TCHVFVLS 461 (838)
Q Consensus 440 SpDg~~Las~S~dG-----TVhIw~l~ 461 (838)
||||+.|+..+.+. .|+++++.
T Consensus 229 spDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 229 GPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp CSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred ecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 99999999888763 35555553
No 283
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=81.65 E-value=1.2e+02 Score=38.21 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=59.6
Q ss_pred eEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 350 IVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH-~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
.|++.|...++.+..++.- ...|.+.+.+. .+++.|+ |..|.+|.+.. | .+.+..+-
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~--g~~l~~fel~~-------~-----------~L~~~~~~ 550 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV--GRALYYLQIHP-------Q-----------ELRQISHT 550 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE--TTEEEEEEEET-------T-----------EEEEEEEE
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE--CCEEEEEEeeC-------C-----------ceeeeccc
Confidence 4667776655556666543 34677777664 4666665 45677888843 2 22222221
Q ss_pred cccccEEEEEEccC------CCEEEEEeC-CCeEEEEecCC
Q 003221 429 ITSATIQDICFSHY------SQWIAIVSS-KGTCHVFVLSP 462 (838)
Q Consensus 429 ~t~a~I~sIaFSpD------g~~Las~S~-dGTVhIw~l~~ 462 (838)
.....|.|+++.|. ++++|+|.. |+||+|++++.
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 12347999999864 579999996 99999999963
No 284
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=81.59 E-value=13 Score=38.49 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=51.8
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
..|.|..||..+++....... ....+.|+|+|+|+.|..+......|.+|++.... .+ ....+..+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~----~~--------~~~~~~~~- 228 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK----KG--------TAEVLVKI- 228 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT----TT--------CEEEEEEC-
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc----CC--------ccceEEeC-
Confidence 357899999877654322221 12346799999999776665545669999885210 01 11111121
Q ss_pred cccccccEEEEEEccCCCEEEEEeC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVSS 451 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S~ 451 (838)
.. ...|++.+||+..++...
T Consensus 229 ----~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 229 ----PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp ----SS-EEEEEECTTSCEEEEEEE
T ss_pred ----CC-CCCeEECCCCCEEEEecC
Confidence 12 677999999986665544
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=81.29 E-value=60 Score=35.71 Aligned_cols=53 Identities=25% Similarity=0.199 Sum_probs=36.3
Q ss_pred CceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 348 AGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH-~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
.+.|..+|...+.....+... ...-..|+|+|+|++|..+....+.|.+|+..
T Consensus 247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 467888888766542222221 12347899999999777777777888888764
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=79.75 E-value=8.6 Score=41.84 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=66.0
Q ss_pred CCceEEEEECC---CCcEEEEe--ccCC-----------CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCC
Q 003221 347 NAGIVVVKDFV---TRAIISQF--KAHT-----------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (838)
Q Consensus 347 ~~G~V~VwDl~---s~~~v~~~--~aH~-----------spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~ 410 (838)
.+..|..||+. +++.+..+ .+.. .....|+++++|+.-+|.+..-.. ||.+.+. |.
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pd------G~ 169 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSAD------GK 169 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTT------SC
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCC------CC
Confidence 35679999998 66654333 2222 247899999999999999984043 6666553 41
Q ss_pred CccccCCcceEEEEEec--ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 411 HKYDWNSSHVHLYKLHR--GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 411 ~~~~~~~~~~~l~~L~R--G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
. ....-+.. +.+......|++.|||+.|++....|.+..|++.
T Consensus 170 ~--------~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 170 T--------VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp C--------EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred E--------EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 0 11111221 1222236689999999999998889999999987
No 287
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=79.23 E-value=6.7 Score=42.89 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=59.1
Q ss_pred CceEEEEECCCC-c---EEEEeccC-CCCeEEEEECCCCCEEEEEecC--------------CCEEEEEecCCCcccCCC
Q 003221 348 AGIVVVKDFVTR-A---IISQFKAH-TSPISALCFDPSGTLLVTASVY--------------GNNINIFRIMPSCMRSGS 408 (838)
Q Consensus 348 ~G~V~VwDl~s~-~---~v~~~~aH-~spIsaLaFSPdGtlLATAS~d--------------Gt~IrVwdi~p~~~~~~~ 408 (838)
...|.||++... + .+..+.+. -...+.++++++|++.+|...- ...=+||.+.+
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~------- 210 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP------- 210 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-------
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-------
Confidence 456777776542 2 23444432 2346899999999999987620 01134555543
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEecCCCC
Q 003221 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (838)
Q Consensus 409 G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~-S~dGTVhIw~l~~~g 464 (838)
+ .+..+..+.. .-..|+||||+++|.++ +..++|+.|++...+
T Consensus 211 ~-----------~~~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g 254 (355)
T 3sre_A 211 N-----------DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 254 (355)
T ss_dssp T-----------CCEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred C-----------eEEEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence 1 1112222322 35789999999887665 457899999997543
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=77.30 E-value=4.6 Score=47.95 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=51.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEec-CCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~-dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+.|.++|+........+.........|+++|.+.+|.-+.. ....|.++++. |. ....+.
T Consensus 474 ~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--------G~----------~~~~l~ 535 (699)
T 1n7d_A 474 LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV 535 (699)
T ss_dssp TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--------SC----------CCCEES
T ss_pred CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--------CC----------CeeEEE
Confidence 456778887655443333332334578999996554444443 21346555542 21 111121
Q ss_pred -cccccccEEEEEEccCCCEEEE-EeCCCeEEEEecC
Q 003221 427 -RGITSATIQDICFSHYSQWIAI-VSSKGTCHVFVLS 461 (838)
Q Consensus 427 -RG~t~a~I~sIaFSpDg~~Las-~S~dGTVhIw~l~ 461 (838)
.+. ..-..|+|+|++++|.. -+..++|.++++.
T Consensus 536 ~~~l--~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 536 TENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CSSC--SSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred eCCC--CCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 111 13457999998665544 4455678888875
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=74.31 E-value=68 Score=35.42 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=43.4
Q ss_pred eEEEEECC-CCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEE-ecccccccEEEEEEccCCCEEEE-
Q 003221 372 ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITSATIQDICFSHYSQWIAI- 448 (838)
Q Consensus 372 IsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L-~RG~t~a~I~sIaFSpDg~~Las- 448 (838)
...++++| +|.+.++-.. ...|+.|+... | .....+ ..+.. ..-..|+|+||+++|.+
T Consensus 230 P~giavd~~~G~lyv~d~~-~~~V~~~d~~~-------g----------~~~~~~~~~~~~-~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYH-HAMISSYDPAT-------G----------TLTEEEVMMDTK-GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp BCCCEECTTTCCEEECBTT-CSEEEEECTTT-------C----------CEEEEEEECSCC-SSCEEEEECTTSSEEEEE
T ss_pred CCEEEEeCCCCeEEEEECC-CCEEEEEECCC-------C----------eEEEEEeccCCC-CCcccEEEeCCCCEEEEE
Confidence 35688999 7776655443 45577777632 2 121122 22222 22346999999995554
Q ss_pred EeCCCeEEEEecCCC
Q 003221 449 VSSKGTCHVFVLSPF 463 (838)
Q Consensus 449 ~S~dGTVhIw~l~~~ 463 (838)
-...+.|..++++..
T Consensus 291 d~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRE 305 (433)
T ss_dssp ETTTTEEEEEEBCTT
T ss_pred eCCCCEEEEEeCCCC
Confidence 455678888887643
No 290
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=73.48 E-value=11 Score=43.86 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=61.1
Q ss_pred eEEEEECCCCcE--EEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe
Q 003221 350 IVVVKDFVTRAI--ISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (838)
Q Consensus 350 ~V~VwDl~s~~~--v~~~~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~ 426 (838)
.+.+||..+++- +..+. .+.....++++.++|++++.++.++..+.+||.... .| ..+-.+.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-----------~W----~~~~~~~ 284 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD-----------SW----IPGPDMQ 284 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT-----------EE----EECCCCS
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC-----------ce----eECCCCC
Confidence 588999988652 23332 344445578899999999999976777999998531 11 1111111
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CC-----CeEEEEecCC
Q 003221 427 RGITSATIQDICFSHYSQWIAIVS-SK-----GTCHVFVLSP 462 (838)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~Las~S-~d-----GTVhIw~l~~ 462 (838)
.+. .-.++++-+|++.++.|+ .+ .++.+|+...
T Consensus 285 ~~R---~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 285 VAR---GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SCC---SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccc---cccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 110 112355668999999998 34 5689999765
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=72.40 E-value=1.1e+02 Score=34.86 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
.-..|+|+|+|.+|..+....+.|+.++.
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 34789999999987778877888888765
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=71.50 E-value=1.6e+02 Score=34.27 Aligned_cols=183 Identities=13% Similarity=0.021 Sum_probs=0.0
Q ss_pred cEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCC--eEEEEEeCCCcEEEEEeCCC--eEE
Q 003221 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFRSSVCMVRCSPR--IVA 206 (838)
Q Consensus 131 pLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg--~~V~tL~f~s~V~sV~~s~~--iLa 206 (838)
|||+.... +.|+..|+... +....+.--..+.+|+++.+ .|.
T Consensus 10 ~~~~~~~~----------------------------------~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly 55 (619)
T 3s94_A 10 PLLLYANR----------------------------------RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIY 55 (619)
T ss_dssp CCEEEECS----------------------------------SBEEEECCC---------CBCCSCEEEEEEETTTTEEE
T ss_pred ceEEEecc----------------------------------ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEE
Q ss_pred EEe--CCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCCC
Q 003221 207 VGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (838)
Q Consensus 207 V~l--~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~~ 282 (838)
++. .++|+.+++.......++...... ...-+|+.. +.|-++.
T Consensus 56 ~sD~~~~~I~r~~~~g~~~~~~v~~~~~~------------~P~GlAvD~~~~~ly~~d--------------------- 102 (619)
T 3s94_A 56 WSDVSEEAIKRTEFNKTESVQNVVVSGLL------------SPDGLACDWLGEKLYWTD--------------------- 102 (619)
T ss_dssp EEETTTTEEEEEEC-----CEEEECSSCS------------CEEEEEEETTTTEEEEEE---------------------
T ss_pred EEECCCCeEEEEEccCCCceEEEEeCCCC------------CcCeEEEEecCCEEEEEe---------------------
Q ss_pred CCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE
Q 003221 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (838)
Q Consensus 283 s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~v 362 (838)
...+.|.+.|+......
T Consensus 103 ---------------------------------------------------------------~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 103 ---------------------------------------------------------------SETNRIEVSNLDGSLRK 119 (619)
T ss_dssp ---------------------------------------------------------------TTTTEEEEEETTSCSCE
T ss_pred ---------------------------------------------------------------CCCCEEEEEECCCCCEE
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-
Q 003221 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH- 441 (838)
Q Consensus 363 ~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp- 441 (838)
..+...-..-..|+++|.+.+|.-+.. |..-+|+..... | .....+....-.. ...|++++
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~-g~~~~I~r~~~d------G----------~~~~~l~~~~~~~-P~Glald~~ 181 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMD------G----------SSRFIIINSEIYW-PNGLTLDYE 181 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEEC-SSSCEEEEEETT------S----------CSCEEEECSSCSS-EEEEEEETT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEecc-CCCCEEEEEECC------C----------CceEEEEeCCCCC-CcEEEEEcc
Q ss_pred CCCEEEEEeCCCeEEEEecC
Q 003221 442 YSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 442 Dg~~Las~S~dGTVhIw~l~ 461 (838)
+++...+-+..++|..++++
T Consensus 182 ~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 182 EQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp TTEEEEEETTTCCEEEESSS
T ss_pred CCEEEEEeCCCCeEEEecCC
No 293
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=70.85 E-value=1e+02 Score=31.96 Aligned_cols=75 Identities=7% Similarity=-0.110 Sum_probs=45.3
Q ss_pred CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003221 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~ 449 (838)
..-+.|+|+|++..|.-+....+.|.++|.. |. ..+.+.. .+..-.....|++. ++....+-
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--------g~-------~~~~~~~--~~~~~~~P~giav~-~~~ly~~d 225 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN--------GG-------NRKTILE--DEKRLAHPFSLAVF-EDKVFWTD 225 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC-------SCEEEEE--CTTTTSSEEEEEEE-TTEEEEEE
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecC--------CC-------ceEEEee--cCCccCCcEEEEEE-CCEEEEEE
Confidence 3457899999988888888767779999873 21 0112222 11111235678884 34555555
Q ss_pred eCCCeEEEEecCC
Q 003221 450 SSKGTCHVFVLSP 462 (838)
Q Consensus 450 S~dGTVhIw~l~~ 462 (838)
...+.|..++...
T Consensus 226 ~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 226 IINEAIFSANRLT 238 (316)
T ss_dssp TTTTEEEEEETTT
T ss_pred CCCCeEEEEeCCC
Confidence 5667777777543
No 294
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=70.41 E-value=34 Score=35.45 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=54.6
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccC
Q 003221 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHY 442 (838)
Q Consensus 364 ~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~-RG~t~a~I~sIaFSpD 442 (838)
.+.+-...++.|+|+|++..|.+.+.+...|...|.. | ..+.++. .|. ...-.|++.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--------g----------~v~~~i~l~g~--~D~EGIa~~~~ 80 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--------G----------DLIRTIPLDFV--KDLETIEYIGD 80 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--------C----------CEEEEEECSSC--SSEEEEEECST
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--------C----------CEEEEEecCCC--CChHHeEEeCC
Confidence 4455556899999999876666655444445555542 3 2344432 232 24778899999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCC
Q 003221 443 SQWIAIVSSKGTCHVFVLSPFGG 465 (838)
Q Consensus 443 g~~Las~S~dGTVhIw~l~~~gg 465 (838)
++++++.-.++.+.+|++...+.
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCe
Confidence 98777766778999999977653
No 295
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.44 E-value=12 Score=43.82 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=41.3
Q ss_pred EEEEECCCCCEEEEEecCCC---------EEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003221 373 SALCFDPSGTLLVTASVYGN---------NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (838)
Q Consensus 373 saLaFSPdGtlLATAS~dGt---------~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg 443 (838)
--|+|+|.|.|++.-+..+. .-.+|-..+. .| .++.|.++...+.++.++|+||+
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~-----~g-----------~~~rf~~~P~gaE~TG~~fspDg 542 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-----TG-----------EIRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTT-----TC-----------CEEEEEECCTTCEEEEEEECTTS
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCC-----CC-----------eEEEEEeCCCCccCcCeeECCCC
Confidence 45999999998876553211 1123433221 12 57778788878899999999999
Q ss_pred CEEEEE
Q 003221 444 QWIAIV 449 (838)
Q Consensus 444 ~~Las~ 449 (838)
+.|.+.
T Consensus 543 ~tlfvn 548 (592)
T 3zwu_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 877663
No 296
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=68.56 E-value=1.3e+02 Score=32.39 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=21.4
Q ss_pred CcEEEEEeCCC--eEEEEe-CCeEEEEECCCCce
Q 003221 193 SSVCMVRCSPR--IVAVGL-ATQIYCFDALTLEN 223 (838)
Q Consensus 193 s~V~sV~~s~~--iLaV~l-~~~I~IwD~~t~e~ 223 (838)
..-..|++.++ ++++-. .++|++++..+++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 35578888765 555555 67899998776653
No 297
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=67.47 E-value=1.3e+02 Score=31.81 Aligned_cols=91 Identities=10% Similarity=-0.053 Sum_probs=49.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
+.|..+|+........+...-..-+.|+|+|++..|.-+....+.|..+++. |. .... -+..+
T Consensus 182 ~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--------G~--------~~~~-~~~~~ 244 (349)
T 3v64_C 182 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--------GS--------HRKA-VISQG 244 (349)
T ss_dssp CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC--------SCEE-EECSS
T ss_pred CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--------CC--------ceEE-EEeCC
Confidence 3455555543222111122223457899999888888888777778888873 21 0111 11111
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
-.....|++ .++....+-...+.|..++
T Consensus 245 --~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 245 --LPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp --CSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred --CCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 123577888 3444444555566666665
No 298
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=67.08 E-value=1.2e+02 Score=31.27 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=48.7
Q ss_pred CCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEccCCC
Q 003221 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSHYSQ 444 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~-----a~I~sIaFSpDg~ 444 (838)
..+++|+|+|.-..|..-|...+.+-++|.. | .....+.|.+|... ..--.|+|.++|+
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--------g--------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV--------G--------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT--------C--------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC--------C--------CEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 4578999999755555556667888888863 3 12445666666422 2357899999998
Q ss_pred EEEEEeCCCeEEEEe
Q 003221 445 WIAIVSSKGTCHVFV 459 (838)
Q Consensus 445 ~Las~S~dGTVhIw~ 459 (838)
|.++|.-+-+.+|.
T Consensus 237 -lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 237 -IYIVSEPNRFYRFT 250 (255)
T ss_dssp -EEEEETTTEEEEEE
T ss_pred -EEEEcCCceEEEEE
Confidence 66667777555554
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=63.80 E-value=1.9e+02 Score=32.52 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=50.3
Q ss_pred CCCCeEEEEECCC---CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec-----ccc--cccEEEE
Q 003221 368 HTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GIT--SATIQDI 437 (838)
Q Consensus 368 H~spIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R-----G~t--~a~I~sI 437 (838)
...+|..+-|+|- |..|++=-.|+. ||+||+..... +.. .|.+ |.. .-.|.++
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~---------------~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQE---------------KPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTS---------------CCE-EESCCCSEEESCSSCCCEEEE
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCC---------------CCc-chhccccccCCCcccceEEEE
Confidence 4678999999995 456777777665 99999964210 111 2211 211 1368999
Q ss_pred EEccCCCEEEEEe--CCCeEEEEecCCC
Q 003221 438 CFSHYSQWIAIVS--SKGTCHVFVLSPF 463 (838)
Q Consensus 438 aFSpDg~~Las~S--~dGTVhIw~l~~~ 463 (838)
+|+.++-.|-+.+ ..| .||.|-|+
T Consensus 186 ~Fg~~~lTLYvl~~t~~G--DIYAlcP~ 211 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGG--DIFAFYPF 211 (452)
T ss_dssp EECTTSSCEEEEECTTSC--EEEEESSC
T ss_pred EEcCCCcEEEEEecCCCC--CEEEECCC
Confidence 9999988777755 555 66777664
No 300
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=60.81 E-value=1.7e+02 Score=30.71 Aligned_cols=72 Identities=13% Similarity=-0.104 Sum_probs=43.8
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S 450 (838)
.-+.|+|+|++..|.-+......|..+|+. |. ....+..+. -.....|++..+ ..+.+-.
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--------G~----------~~~~~~~~~-~~~P~glav~~~-~lywtd~ 226 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLD--------GT----------NRQAVVKGS-LPHPFALTLFED-ILYWTDW 226 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC----------SCEEEECSC-CSCEEEEEEETT-EEEEEET
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCC--------CC----------ceEEEecCC-CCCceEEEEeCC-EEEEEec
Confidence 347899999888888888777778888873 21 111222221 123567777533 3444455
Q ss_pred CCCeEEEEecCC
Q 003221 451 SKGTCHVFVLSP 462 (838)
Q Consensus 451 ~dGTVhIw~l~~ 462 (838)
..+.|..++...
T Consensus 227 ~~~~V~~~~~~~ 238 (318)
T 3sov_A 227 STHSILACNKYT 238 (318)
T ss_dssp TTTEEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 566777777543
No 301
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.16 E-value=21 Score=41.71 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=40.5
Q ss_pred eEEEEECCCCCEEEEEecC----------CCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003221 372 ISALCFDPSGTLLVTASVY----------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (838)
Q Consensus 372 IsaLaFSPdGtlLATAS~d----------Gt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 441 (838)
-.-|+|+++|.+.+..+.. |. -.||.+.+. .| .+..|..+...+.++.++|||
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gn-n~v~~~dp~-----tG-----------el~~fl~~P~~aEpnGiafSP 540 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGN-NQMLCADPA-----TG-----------EIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCS-CEEEEECTT-----TC-----------CEEEEEECCTTCEEEEEEECT
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCC-ceEEEEeCC-----CC-----------eEEEEEeCCCCccccCCEECC
Confidence 3569999999988844321 11 156666442 13 355555554456899999999
Q ss_pred CCCEEEEE
Q 003221 442 YSQWIAIV 449 (838)
Q Consensus 442 Dg~~Las~ 449 (838)
|++.|.++
T Consensus 541 D~ktLfV~ 548 (592)
T 4a9v_A 541 DQKTLFVG 548 (592)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99988775
No 302
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=58.98 E-value=2.7e+02 Score=32.57 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=56.4
Q ss_pred ceEEEEECCCCcEEEEeccC-----CCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 349 GIVVVKDFVTRAIISQFKAH-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH-----~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+-|.+||..+++........ ...|.+|..+++|++.+.....| +..||... + .+.
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G--l~~~~~~~-------~-----------~~~ 528 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG--VGIYTPDM-------Q-----------LVR 528 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC--EEEECTTC-------C-----------EEE
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC--EEEEeCCC-------C-----------eEE
Confidence 45788888776543222212 36799999999999887554334 56677532 1 222
Q ss_pred EEe--cccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 424 KLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 424 ~L~--RG~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
.+. .|.....|.+|...++|+..++ +.+|-+..|+..
T Consensus 529 ~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~ 567 (781)
T 3v9f_A 529 KFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSAR 567 (781)
T ss_dssp EECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTT
T ss_pred EccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCC
Confidence 332 2333446999999999985444 447754666543
No 303
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=58.92 E-value=2e+02 Score=31.06 Aligned_cols=93 Identities=8% Similarity=-0.111 Sum_probs=51.0
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc-
Q 003221 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG- 428 (838)
Q Consensus 350 ~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG- 428 (838)
.|...|+........+...-..-+.|+|+|++..|.-+....+.|..+|+. |. ....+..+
T Consensus 226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--------G~----------~~~~~~~~~ 287 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--------GG----------NRKTILEDE 287 (400)
T ss_dssp CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC----------CCEEEEECS
T ss_pred EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--------CC----------ccEEEEeCC
Confidence 345555543222222222224568899999988888888877789888873 21 11122111
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
..-.....|++. .+..+.+-...+.|..++..
T Consensus 288 ~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 288 KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp STTSSEEEEEEE-TTEEEEEESSSCSEEEEESS
T ss_pred CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcC
Confidence 111234567773 33444455566677777643
No 304
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=58.42 E-value=2.7e+02 Score=32.50 Aligned_cols=91 Identities=12% Similarity=0.056 Sum_probs=54.8
Q ss_pred CceEEEEECCCCcEEEEe----ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 348 AGIVVVKDFVTRAIISQF----KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~----~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
.+-|.+||..+++. ..+ ......|.+|..+++|.+.+ |...+. +.+|+... + .+.
T Consensus 382 ~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~G-l~~~~~~~-------~-----------~~~ 440 (781)
T 3v9f_A 382 GGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGN-ISYYNTRL-------K-----------KFQ 440 (781)
T ss_dssp SSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEE-EEEECSSS-------C-----------EEE
T ss_pred CCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCC-EEEEcCCC-------C-----------cEE
Confidence 44578888765432 222 12346799999999999887 444233 67777632 2 222
Q ss_pred EEec-ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 003221 424 KLHR-GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (838)
Q Consensus 424 ~L~R-G~t~a~I~sIaFSpDg~~Las~S~dGTVhIw~l~ 461 (838)
.+.. +.....|.+|...++++..+ ++.. -+.+|+..
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~ 477 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKIWI-GTHA-GVFVIDLA 477 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEEEE-EETT-EEEEEESS
T ss_pred EeccCCCCCCeEEEEEECCCCCEEE-EECC-ceEEEeCC
Confidence 2221 22334699999998887444 4444 47777754
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=57.26 E-value=2.8e+02 Score=32.20 Aligned_cols=182 Identities=12% Similarity=-0.000 Sum_probs=0.0
Q ss_pred CcEEEEEECCCCCcCCCCCCCCCCCCcccCccCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--cEEEEEeCCC----
Q 003221 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSPR---- 203 (838)
Q Consensus 130 rpLLavV~~d~t~~~~~~~~~~~~~~~~~gs~d~~~~~~~~~p~tV~IWDl~tg~~V~tL~f~s--~V~sV~~s~~---- 203 (838)
.|+|++... ..|+..|+.+.+....+.+.. .+.+|+++++
T Consensus 6 ~~~Ll~s~~----------------------------------~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~l 51 (628)
T 4a0p_A 6 EAFLLFSRR----------------------------------ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRI 51 (628)
T ss_dssp CCEEEEEET----------------------------------TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEE
T ss_pred CcEEEEEeC----------------------------------CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEE
Q ss_pred eEEEEeCCeEEEEECCCCceeeEEeecCCcccCCCCccccccccceeEEcc--cEEEEeCCCceeecCCCCCCcccCCCC
Q 003221 204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (838)
Q Consensus 204 iLaV~l~~~I~IwD~~t~e~l~tL~t~p~p~~~~~~~~~~~~g~g~~Alsp--r~LAys~~~~~l~~~G~vs~q~l~~~~ 281 (838)
+++=...++|+.+++........+...-.. ..-+|+.. +.|-++.
T Consensus 52 ywtD~~~~~I~r~~~~g~~~~~v~~~g~~~-------------P~GlAvD~~~~~LY~tD-------------------- 98 (628)
T 4a0p_A 52 YWTDISLKTISRAFMNGSALEHVVEFGLDY-------------PEGMAVDWLGKNLYWAD-------------------- 98 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSC-------------CCEEEEETTTTEEEEEE--------------------
T ss_pred EEEECCCCeEEEEECCCCCcEEEEeCCCCC-------------cceEEEEeCCCEEEEEE--------------------
Q ss_pred CCCCCCCCCCcceeeeehhhhhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcE
Q 003221 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (838)
Q Consensus 282 ~s~stsps~gslva~~A~ds~k~la~Gl~ktls~y~~~~~p~gs~s~~s~n~~~k~~~~~~~~g~~~G~V~VwDl~s~~~ 361 (838)
...+.|.+.|+.....
T Consensus 99 ----------------------------------------------------------------~~~~~I~v~~~dG~~~ 114 (628)
T 4a0p_A 99 ----------------------------------------------------------------TGTNRIEVSKLDGQHR 114 (628)
T ss_dssp ----------------------------------------------------------------TTTTEEEEEETTSTTC
T ss_pred ----------------------------------------------------------------CCCCEEEEEecCCCcE
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003221 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (838)
Q Consensus 362 v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSp 441 (838)
...+...-..-..|+++|...+|.-+.. |..-+|+.+... | .....+-.+... ...|++++
T Consensus 115 ~~l~~~~l~~P~~iavdp~~G~lY~tD~-g~~~~I~r~~~d------G----------~~~~~l~~~~~~--P~GlalD~ 175 (628)
T 4a0p_A 115 QVLVWKDLDSPRALALDPAEGFMYWTEW-GGKPKIDRAAMD------G----------SERTTLVPNVGR--ANGLTIDY 175 (628)
T ss_dssp EEEECSSCCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETT------S----------CSCEEEECSCSS--EEEEEEET
T ss_pred EEEEeCCCCCcccEEEccCCCeEEEeCC-CCCCEEEEEeCC------C----------CceEEEECCCCC--cceEEEcc
Q ss_pred CCCEEEEE-eCCCeEEEEecC
Q 003221 442 YSQWIAIV-SSKGTCHVFVLS 461 (838)
Q Consensus 442 Dg~~Las~-S~dGTVhIw~l~ 461 (838)
+++.|..+ +..+.|..++++
T Consensus 176 ~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 176 AKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETT
T ss_pred ccCEEEEEECCCCEEEEEcCC
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=52.45 E-value=98 Score=33.54 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=63.5
Q ss_pred CCceEEEEECCCCcEEE-Eecc----CCC--CeEEEEE---CCCCCEEEEEec------------CCCEEEEEecCCCcc
Q 003221 347 NAGIVVVKDFVTRAIIS-QFKA----HTS--PISALCF---DPSGTLLVTASV------------YGNNINIFRIMPSCM 404 (838)
Q Consensus 347 ~~G~V~VwDl~s~~~v~-~~~a----H~s--pIsaLaF---SPdGtlLATAS~------------dGt~IrVwdi~p~~~ 404 (838)
..|+|..||...+.... .+.. ... .+..|.| +|+|++|+.+.. ....+..||+.-
T Consensus 33 ~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~--- 109 (334)
T 2p9w_A 33 YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPL--- 109 (334)
T ss_dssp TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSC---
T ss_pred cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCc---
Confidence 56899999987554332 3332 111 3578999 799999986441 134577888740
Q ss_pred cCCCCCCccccCCcceEEEEEec---------ccccccEEEEEEccCCCEEEEEeCC-CeEEEEecCCCCC
Q 003221 405 RSGSGNHKYDWNSSHVHLYKLHR---------GITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 465 (838)
Q Consensus 405 ~~~~G~~~~~~~~~~~~l~~L~R---------G~t~a~I~sIaFSpDg~~Las~S~d-GTVhIw~l~~~gg 465 (838)
+.+|. ......|.. |.......+|+..++|+--++.+.. +. ||.+++.|.
T Consensus 110 -~~tg~--------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~ 169 (334)
T 2p9w_A 110 -SENSK--------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK 169 (334)
T ss_dssp -CTTCC--------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC
T ss_pred -CCCCC--------EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC
Confidence 00021 011122210 1111248899999999988888877 64 777877664
No 307
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=51.36 E-value=77 Score=41.06 Aligned_cols=106 Identities=8% Similarity=0.175 Sum_probs=65.5
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecc
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG 428 (838)
.+++|+|+.++..+..+.- ..+|..=.|=-+- .|+--. ++.|.-|++... +..++++..+.-
T Consensus 86 ~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT--~~aVyHW~~~~~--------------s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHSS 147 (1630)
T ss_pred CeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc--CCeEEEeccCCC--------------CccHHHHhcchh
Confidence 5799999988765554443 3466665554433 333333 245899999421 111233332222
Q ss_pred cccccEEEEEEccCCCEEEEEeC-------CCeEEEEecCCCCCccccccCC
Q 003221 429 ITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLS 473 (838)
Q Consensus 429 ~t~a~I~sIaFSpDg~~Las~S~-------dGTVhIw~l~~~gg~~~~~~H~ 473 (838)
..++.|.+-.-++|.+|++..+- .|.+.+|.++. +....+.+|.
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha 198 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 198 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhH
Confidence 23456888889999999987554 47889999865 4455677774
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=49.58 E-value=73 Score=34.59 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=34.5
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCC
Q 003221 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (838)
.|.|.-+|.. ++ ..+...-.--+.|+|||||+.|..+......|.+|++..
T Consensus 202 ~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 202 WSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 4566666653 22 222222234588999999998888887677899999853
No 309
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=48.54 E-value=2e+02 Score=31.60 Aligned_cols=109 Identities=10% Similarity=0.149 Sum_probs=63.7
Q ss_pred ceEEEEECCCC--cEEEEecc------CCCCeEEEEEC---CC----CCEEEEEecCCCEEEEEecCCCcccCCCCCCcc
Q 003221 349 GIVVVKDFVTR--AIISQFKA------HTSPISALCFD---PS----GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (838)
Q Consensus 349 G~V~VwDl~s~--~~v~~~~a------H~spIsaLaFS---Pd----GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~ 413 (838)
-.+.+||+.+. +++.++.- ..+-+..|+++ |+ +.+..-++..+.-|-|+|+......-- ...
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv---~~~ 199 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNV---THP 199 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEE---ECG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEE---ccC
Confidence 36999999999 88876642 24568999999 33 456666666566789999965210000 000
Q ss_pred ccCCcceEEEEEecccc---cccEEEEEEccC----CCEEEEEeCCCeEEEEecCC
Q 003221 414 DWNSSHVHLYKLHRGIT---SATIQDICFSHY----SQWIAIVSSKGTCHVFVLSP 462 (838)
Q Consensus 414 ~~~~~~~~l~~L~RG~t---~a~I~sIaFSpD----g~~Las~S~dGTVhIw~l~~ 462 (838)
.+.....-.+.. .|.. ...|..|+.||| +++|.-....++ ++|.|++
T Consensus 200 ~~~pd~~~~~~i-~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T 253 (381)
T 3q6k_A 200 TFKAERPTKFDY-GGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNT 253 (381)
T ss_dssp GGSCCSCEEEEE-TTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEH
T ss_pred CCccccCcceEE-CCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEH
Confidence 000000001110 1110 124888999998 788888777764 7777754
No 310
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=48.18 E-value=8.4 Score=30.31 Aligned_cols=32 Identities=31% Similarity=0.716 Sum_probs=21.9
Q ss_pred eecCCCCC--CccccCCCCeeEEEecccceeeee-eeee
Q 003221 794 CHSNPASL--SSTESSEGGKTLFFVCPMEIINCA-IWKV 829 (838)
Q Consensus 794 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 829 (838)
|+...+.. .-+-|.|++.|+||+|. +|. .|++
T Consensus 15 Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~----~Cg~~w~~ 49 (50)
T 1tfi_A 15 CKKKNCTYTQVQTRSADEPMTTFVVCN----ECGNRWKF 49 (50)
T ss_dssp SCSSCEEEEEECSSSSSSCCEEEEEES----SSCCEEEC
T ss_pred CCCCEEEEEEecCcCCCCCceEEEEcC----CCCCeEEe
Confidence 55554442 34678999999999994 575 5654
No 311
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=47.22 E-value=87 Score=34.89 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=37.4
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccC---C
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHY---S 443 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~----t~a~I~sIaFSpD---g 443 (838)
.-..|+|.|+|++|++-.. |..|++++... |. ...+..+.... ....+..|+|+|| +
T Consensus 28 ~P~~~a~~pdG~l~V~e~~-gg~I~~~~~~~-------g~--------~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~ 91 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERA-TGKILRVNPES-------GS--------VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN 91 (454)
T ss_dssp SEEEEEECTTSCEEEEETT-TCEEEEECTTT-------CC--------EEEEEECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred CceEEEEcCCCcEEEEEcC-CCEEEEEECCC-------Cc--------EeEEecCCccccccCCCCceeEEEECCCcCcC
Confidence 3468999999998887544 54465555321 21 12223332211 1235789999997 6
Q ss_pred CEEEEEe
Q 003221 444 QWIAIVS 450 (838)
Q Consensus 444 ~~Las~S 450 (838)
.+|.++.
T Consensus 92 g~lYv~~ 98 (454)
T 1cru_A 92 PYIYISG 98 (454)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 6665554
No 312
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=45.53 E-value=4.7e+02 Score=31.36 Aligned_cols=52 Identities=10% Similarity=-0.041 Sum_probs=34.4
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
+.|.+.++........+...-...+.|++++.+..|.-+..+...|.++++.
T Consensus 537 ~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 537 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 3455566554333333333334678999999888888888777778888873
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=42.56 E-value=1e+02 Score=32.85 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=46.8
Q ss_pred CCceEEEEECCCCc-EEEEec---cCCCCeEEEEECCC----CCEEEEEec---CC---CEEEEEecCCCcccCCCCCCc
Q 003221 347 NAGIVVVKDFVTRA-IISQFK---AHTSPISALCFDPS----GTLLVTASV---YG---NNINIFRIMPSCMRSGSGNHK 412 (838)
Q Consensus 347 ~~G~V~VwDl~s~~-~v~~~~---aH~spIsaLaFSPd----GtlLATAS~---dG---t~IrVwdi~p~~~~~~~G~~~ 412 (838)
..|.|.++|. +++ .+..+. .-......|+|+|+ |.+.++-+. ++ +.|..|+.... .+.
T Consensus 47 ~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-----~~~-- 118 (354)
T 3a9g_A 47 RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-----TFK-- 118 (354)
T ss_dssp TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-----SCC--
T ss_pred CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-----CcC--
Confidence 3488888873 343 333322 12345788999997 666665542 11 34555555321 000
Q ss_pred cccCCcceEEEE-EecccccccEEEEEEccCCCEEEEEeC
Q 003221 413 YDWNSSHVHLYK-LHRGITSATIQDICFSHYSQWIAIVSS 451 (838)
Q Consensus 413 ~~~~~~~~~l~~-L~RG~t~a~I~sIaFSpDg~~Las~S~ 451 (838)
+. ..+.+.. +..+.. ..-..|+|.|||+..++.++
T Consensus 119 --~~-~~~~l~~~~~~~~~-h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 119 --LK-EVKTLIDGIPGAYI-HNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp --EE-EEEEEEEEEECCSS-CCCCCEEECTTSCEEEECCC
T ss_pred --cC-ccEEEEEcCCCCCC-cCCceEEECCCCcEEEEECC
Confidence 00 0122222 221111 12467999999986666544
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=41.24 E-value=1e+02 Score=32.65 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=46.0
Q ss_pred CCceEEEEECCCCc--EEEEec---cCCCCeEEEEECCC----CCEEEEEecCC----CEEEEEecCCCcccCCCCCCcc
Q 003221 347 NAGIVVVKDFVTRA--IISQFK---AHTSPISALCFDPS----GTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKY 413 (838)
Q Consensus 347 ~~G~V~VwDl~s~~--~v~~~~---aH~spIsaLaFSPd----GtlLATAS~dG----t~IrVwdi~p~~~~~~~G~~~~ 413 (838)
..|.|.+++ .++ .+..+. .-......|+|+|+ |.+.++-+..+ +.|..|+... +.
T Consensus 49 ~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~-------~~--- 116 (352)
T 2ism_A 49 RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG-------ER--- 116 (352)
T ss_dssp TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS-------SC---
T ss_pred CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC-------CC---
Confidence 348888888 333 222222 12345788999998 55555544321 3466666531 10
Q ss_pred ccCCcceEEEE-Ee--cc-cccccEEEEEEccCCCEEEEEeC
Q 003221 414 DWNSSHVHLYK-LH--RG-ITSATIQDICFSHYSQWIAIVSS 451 (838)
Q Consensus 414 ~~~~~~~~l~~-L~--RG-~t~a~I~sIaFSpDg~~Las~S~ 451 (838)
+. ..+.+.+ +. .+ .+ ....|+|.|||...++.++
T Consensus 117 -~~-~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 117 -GV-LDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp -EE-EEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEECCC
T ss_pred -cC-ceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEEECC
Confidence 00 1122222 32 11 12 2357999999976555443
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=40.50 E-value=1.1e+02 Score=32.43 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=41.6
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccC---CC
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHY---SQ 444 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~---RG~t~a~I~sIaFSpD---g~ 444 (838)
.-..|+|+|+|+++++- ..| .|++++ . |. ...+..+. .| ......|+|+|| +.
T Consensus 32 ~P~~ia~~pdG~l~V~e-~~g-~I~~i~--~-------g~--------~~~~~~~~v~~~g--~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAE-RPG-RIRLFR--E-------GR--------LSTYAELSVYHRG--ESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CEEEEEECTTSCEEEEE-TTT-EEEEEE--T-------TE--------EEEEEECCCCCST--TCSEEEEEECTTTTTSC
T ss_pred CceEEEEcCCCeEEEEe-CCC-eEEEEE--C-------CC--------ccEeecceEeecC--CCCceeEEECCCCCCCC
Confidence 34689999999977764 435 477776 2 21 01222221 11 124789999999 66
Q ss_pred EEEEEeCC------CeEEEEecC
Q 003221 445 WIAIVSSK------GTCHVFVLS 461 (838)
Q Consensus 445 ~Las~S~d------GTVhIw~l~ 461 (838)
+|.++... +.|..|++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeC
Confidence 66554432 456666654
No 316
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=39.90 E-value=14 Score=29.42 Aligned_cols=22 Identities=27% Similarity=0.912 Sum_probs=17.0
Q ss_pred cccCCCCeeEEEecccceeeee-eeee
Q 003221 804 TESSEGGKTLFFVCPMEIINCA-IWKV 829 (838)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~-~~~~ 829 (838)
+-|.|++.|+||+|+ +|. .|+.
T Consensus 33 ~rsadep~T~fy~C~----~Cg~~w~~ 55 (57)
T 1qyp_A 33 TRAGDEPSTIFYKCT----KCGHTWRS 55 (57)
T ss_dssp CSSSSCSSEEEEEES----SSCCEEEC
T ss_pred cccCCCCCcEEEEcC----CCCCEecc
Confidence 347899999999996 475 5665
No 317
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=39.35 E-value=2.1e+02 Score=29.67 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=45.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003221 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (838)
Q Consensus 367 aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (838)
.+...+..++|+|+|++++.+.. |...+-+|- .|. .| ..+ ..+ ....+.+++++++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~--------gG~---tW----~~~---~~~-~~~~~~~~~~~~~g~~~ 219 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEP--------GQT---AW----EPH---NRT-TSRRLHNMGFTPDGRLW 219 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETT-SSEEEEECT--------TCS---SC----EEE---ECC-SSSCEEEEEECTTSCEE
T ss_pred CCCcceEEEEEcCCCcEEEEECC-CcEEEEeCC--------CCC---ce----eEC---CCC-CCCccceeEECCCCCEE
Confidence 45567899999999999887654 775554442 021 11 222 223 23468999999999866
Q ss_pred EEEeCCCeEEEEe
Q 003221 447 AIVSSKGTCHVFV 459 (838)
Q Consensus 447 as~S~dGTVhIw~ 459 (838)
+ ++.+|.+.+..
T Consensus 220 ~-~~~~G~~~~s~ 231 (327)
T 2xbg_A 220 M-IVNGGKIAFSD 231 (327)
T ss_dssp E-EETTTEEEEEE
T ss_pred E-EeCCceEEEec
Confidence 4 45678776653
No 318
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=39.08 E-value=66 Score=33.69 Aligned_cols=91 Identities=14% Similarity=0.194 Sum_probs=50.2
Q ss_pred CceEEEEECCCCcEEEEec----cCCCCeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEE
Q 003221 348 AGIVVVKDFVTRAIISQFK----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (838)
Q Consensus 348 ~G~V~VwDl~s~~~v~~~~----aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~ 423 (838)
+|.+.+.+...++.-..+. .+...+.+++|.++++++|.+.. |. | |..... |. .| .
T Consensus 224 ~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-g~-i--~~S~Dg------G~---tW-------~ 283 (327)
T 2xbg_A 224 GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-GA-L--LCSQDG------GQ---TW-------Q 283 (327)
T ss_dssp TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST-TC-E--EEESST------TS---SC-------E
T ss_pred CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC-Ce-E--EEeCCC------Cc---cc-------E
Confidence 4666665433233333232 12345899999999998887764 76 3 332221 31 11 1
Q ss_pred EEeccc-ccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003221 424 KLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (838)
Q Consensus 424 ~L~RG~-t~a~I~sIaFSpDg~~Las~S~dGTVhIw~ 459 (838)
.+..+. ....+++|+|.++++ +++++.+|+|.-++
T Consensus 284 ~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 284 QDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp ECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 222221 124578899986665 55667789765544
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=35.72 E-value=1.4e+02 Score=33.15 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=47.1
Q ss_pred CCeEEEEECCCCCEEEEEecCCC-----------------------------EEEEEecCCCcccCCCCCCccc--cCCc
Q 003221 370 SPISALCFDPSGTLLVTASVYGN-----------------------------NINIFRIMPSCMRSGSGNHKYD--WNSS 418 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt-----------------------------~IrVwdi~p~~~~~~~G~~~~~--~~~~ 418 (838)
+....|+|+|||.|.++.+..+. .=+|+++.+. |....+ +..
T Consensus 144 H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~d------G~ip~~Npf~~- 216 (454)
T 1cru_A 144 HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLD------GSIPKDNPSFN- 216 (454)
T ss_dssp CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTT------SCCCTTCCEET-
T ss_pred CCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCC------CCCCCCCCCCC-
Confidence 35789999999999998664321 1246666553 210000 000
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEE-EeCCCeEEEEecCC
Q 003221 419 HVHLYKLHRGITSATIQDICFSHYSQWIAI-VSSKGTCHVFVLSP 462 (838)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~Las-~S~dGTVhIw~l~~ 462 (838)
......+..|+. ..+.|+|.|+|+..++ -+.++--.|..|.+
T Consensus 217 ~~~~ei~a~G~R--Np~gla~dp~G~L~~~d~g~~~~dein~i~~ 259 (454)
T 1cru_A 217 GVVSHIYTLGHR--NPQGLAFTPNGKLLQSEQGPNSDDEINLIVK 259 (454)
T ss_dssp TEECSEEEBCCS--EEEEEEECTTSCEEEEEECSSSCEEEEECCT
T ss_pred CCcceEEEECCC--CcceEEECCCCCEEEEecCCCCCeEEEEecC
Confidence 001122334653 4899999999875444 44555566666654
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=33.91 E-value=2.2e+02 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCEEEEEecCCCEEEEEec
Q 003221 370 SPISALCFDPSGTLLVTASVYGNNINIFRI 399 (838)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (838)
..-..|+|.|||++|+|--..|+ |++++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~-I~~v~~ 60 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEAT-ITRVDA 60 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCE-EEEECT
T ss_pred CCceEEEEcCCCcEEEEEecCCE-EEEEEC
Confidence 44578999999999988764465 666654
No 321
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=31.77 E-value=1.3e+02 Score=34.39 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=41.6
Q ss_pred CeEEEEECCC-CCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEec-cccc-ccEEEEEE-------c
Q 003221 371 PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITS-ATIQDICF-------S 440 (838)
Q Consensus 371 pIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~R-G~t~-a~I~sIaF-------S 440 (838)
.-..|+|+|. +..|..+...++.|+++|+.. ..+..|.. |... .....|+| +
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~------------------~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d 201 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN------------------RMLSSPLNINTIPTNRIRSIAFNKKIEGYA 201 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT------------------TEEEEEECCTTSSCSBEEEEEECCCBTTTB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC------------------CEEEEEEccCccccCCCcEEEEeecccccC
Confidence 4578999993 444444444456688888753 24445432 2211 24899999 9
Q ss_pred cCCCEEEEEeCCC
Q 003221 441 HYSQWIAIVSSKG 453 (838)
Q Consensus 441 pDg~~Las~S~dG 453 (838)
+|+++|.++...+
T Consensus 202 ~~G~~lyvad~~~ 214 (496)
T 3kya_A 202 DEAEYMIVAIDYD 214 (496)
T ss_dssp CTTCEEEEEECCC
T ss_pred CCCCEEEEEeCCC
Confidence 9999777776665
No 322
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=31.37 E-value=4.6e+02 Score=27.19 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=40.7
Q ss_pred EECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeE
Q 003221 376 CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTC 455 (838)
Q Consensus 376 aFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dGTV 455 (838)
.++|+|.+|+-....+. .+|+.+... |. ....|.. ..+ ..|+|++++|.-++..+.-
T Consensus 190 ~~~P~g~~iy~t~~~~~-~~I~~~~ld------G~----------~~~~Lt~----~~~--~~~~~~g~~Iy~~~~~~~~ 246 (302)
T 3s25_A 190 PVVLDDTNVYYMDVNRD-NAIVHVNIN------NP----------NPVVLTE----ANI--EHYNVYGSLIFYQRGGDNP 246 (302)
T ss_dssp EEEEETTEEEEEEGGGT-TEEEEECSS------SC----------CCEECSC----SCE--EEEEEETTEEEEEECSSSC
T ss_pred eeeecCCEEEEEEcCCC-cEEEEEECC------CC----------CeEEEeC----CCc--ceEEECCCEEEEEECCCCc
Confidence 46799999987776443 456665432 31 2223321 223 3488999999877655456
Q ss_pred EEEecCCCCC
Q 003221 456 HVFVLSPFGG 465 (838)
Q Consensus 456 hIw~l~~~gg 465 (838)
+|+.+..-|.
T Consensus 247 ~i~~~~~DG~ 256 (302)
T 3s25_A 247 ALCVVKNDGT 256 (302)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEECCCC
Confidence 7787776553
No 323
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=30.81 E-value=1.7e+02 Score=31.24 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=35.2
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccC---CC
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHY---SQ 444 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~---RG~t~a~I~sIaFSpD---g~ 444 (838)
.-..|+|+|+|+++++- ..|+ |++++. . | . ..+..+. .| ......|+|+|| +.
T Consensus 30 ~P~~ia~~pdG~l~V~e-~~g~-I~~~d~-~-------G--------~-~~~~~~~v~~~g--~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTE-RPGR-LVLISP-S-------G--------K-KLVASFDVANVG--EAGLLGLALHPEFPKKS 88 (354)
T ss_dssp CEEEEEEEETTEEEEEE-TTTE-EEEECS-S-------C--------E-EEEEECCCCCST--TCSEEEEEECTTTTTSC
T ss_pred CCeEEEEcCCCeEEEEe-CCCE-EEEEeC-C-------C--------c-eEeeccceeecC--CCceeeEEeCCCCCcCC
Confidence 45789999999977764 4354 666652 1 3 0 1222211 11 124789999998 55
Q ss_pred EEEEEe
Q 003221 445 WIAIVS 450 (838)
Q Consensus 445 ~Las~S 450 (838)
+|.++.
T Consensus 89 ~lyv~~ 94 (354)
T 3a9g_A 89 WVYLYA 94 (354)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 655544
No 324
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=28.43 E-value=1.1e+02 Score=36.05 Aligned_cols=52 Identities=10% Similarity=-0.041 Sum_probs=32.1
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEecC
Q 003221 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (838)
Q Consensus 349 G~V~VwDl~s~~~v~~~~aH~spIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (838)
+.|.++++........+...-..-+.|+|+|++..|.-+....+.|.++++.
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 5677777653322112222223346799999877777777767778888873
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=27.24 E-value=1.3e+02 Score=31.05 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=38.7
Q ss_pred EEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003221 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (838)
Q Consensus 373 saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~d 452 (838)
.++.|+|+|.+.|. + +|. |+++.+.. + +. ..|.....++- ++|- ..+..|.|.|||..-|+. |
T Consensus 91 ~a~~fD~~G~LYav-~-dG~---iyr~~pP~--~--~~--~~Wl~~a~~vg--~~gw--~~~~~lff~p~G~Lyav~--d 153 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV-S-KDK---LYKASPPQ--S--DT--DNWIARATEVG--SGGW--SGFKFLFFHPNGYLYAVH--G 153 (236)
T ss_dssp SEEEECTTSCEEEE-E-TTE---EEEESCCC--S--TT--CCHHHHSEEEE--CSSG--GGEEEEEECTTSCEEEEE--T
T ss_pred eEEEECCCCCEEEe-C-CCE---EEEeCCCc--C--CC--CceeccccEec--cCCC--CceEEEEECCCceEEEEe--C
Confidence 57999999999988 4 475 44444421 1 11 12221112221 1222 258999999999988777 7
Q ss_pred Ce
Q 003221 453 GT 454 (838)
Q Consensus 453 GT 454 (838)
+.
T Consensus 154 g~ 155 (236)
T 1tl2_A 154 QQ 155 (236)
T ss_dssp TE
T ss_pred Cc
Confidence 76
No 326
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=26.44 E-value=22 Score=32.86 Aligned_cols=35 Identities=29% Similarity=0.673 Sum_probs=25.1
Q ss_pred eecCCCCCC--ccccCCCCeeEEEecccceeeee-eeeeecc
Q 003221 794 CHSNPASLS--STESSEGGKTLFFVCPMEIINCA-IWKVENL 832 (838)
Q Consensus 794 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 832 (838)
|+...+..- -+-|.|+|.|+||+|. +|. .|+.+|.
T Consensus 78 C~~~~a~~~q~q~rsade~~t~fy~C~----~C~~~w~~nn~ 115 (122)
T 1twf_I 78 CHSRENVFFQSQQRRKDTSMVLFFVCL----SCSHIFTSDQK 115 (122)
T ss_dssp TCCCCEEEEECSSCCTTCCCCEEEEET----TTCCEEECCTT
T ss_pred CCCCEEEEEEecCccCCCCceEEEEeC----CCCCEeccCCh
Confidence 555554432 3678999999999995 586 5888763
No 327
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=26.08 E-value=5.8e+02 Score=28.34 Aligned_cols=101 Identities=11% Similarity=0.138 Sum_probs=52.5
Q ss_pred CCCceEEEEECCCC---cEEEEec---c------CCCCeEEEEECCC----CCEEEEEecCC---------CEEEE--Ee
Q 003221 346 DNAGIVVVKDFVTR---AIISQFK---A------HTSPISALCFDPS----GTLLVTASVYG---------NNINI--FR 398 (838)
Q Consensus 346 ~~~G~V~VwDl~s~---~~v~~~~---a------H~spIsaLaFSPd----GtlLATAS~dG---------t~IrV--wd 398 (838)
+..|.|+++|.... +.+..+. + -..-+..|+|+|+ |.+.++-+..+ ...+| |.
T Consensus 33 er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~ 112 (463)
T 2wg3_C 33 EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYT 112 (463)
T ss_dssp ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEE
T ss_pred eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEE
Confidence 45688888875422 1223332 1 1356788999996 77766655321 12344 55
Q ss_pred cCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003221 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (838)
Q Consensus 399 i~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S~dG 453 (838)
+... + .. ..++. +.+.+.++........-..|+|.|||+..++.++.+
T Consensus 113 ~~~~---~-~~--~~d~~-~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 113 VSRK---N-PH--QVDLR-TARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp BCTT---C-TT--SBCGG-GCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EcCC---C-CC--ccCCC-CceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 4320 0 00 01111 124455543211112468899999998777766654
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=24.94 E-value=93 Score=32.11 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=41.3
Q ss_pred CeEEEEECCCCCEEEEEecCCCEEEEEecCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003221 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (838)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~~G~~~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDg~~Las~S 450 (838)
.+..|+|+|+|.|-|. +. |. +|.+.+.. + .+..|-.+..++-. .|-+. -..+.|.|+|...++
T Consensus 42 ~~~~laf~P~G~LYaV-~~-G~---Ly~~~~~t-----~-~~~~W~~s~t~IG~--~Gw~~--F~a~~fD~~G~LYav-- 104 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LN-DK---IYKGTPPT-----H-DNDNWMGRAKKIGN--GGWNQ--FQFLFFDPNGYLYAV-- 104 (236)
T ss_dssp TCSEEEECTTSCEEEE-ET-TE---EEEESCCC-----S-TTCCHHHHCEEEEC--SCGGG--CSEEEECTTSCEEEE--
T ss_pred cceeEEECCCccEEEE-eC-Ce---EEEECCCC-----C-CcccccccccEecc--ccccc--ceEEEECCCCCEEEe--
Confidence 5569999999998887 44 64 67665421 0 11122111122111 12111 367899999998888
Q ss_pred CCCeEEEEecCC
Q 003221 451 SKGTCHVFVLSP 462 (838)
Q Consensus 451 ~dGTVhIw~l~~ 462 (838)
.|| +||.+++
T Consensus 105 ~dG--~iyr~~p 114 (236)
T 1tl2_A 105 SKD--KLYKASP 114 (236)
T ss_dssp ETT--EEEEESC
T ss_pred CCC--EEEEeCC
Confidence 458 4555555
No 329
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=21.71 E-value=1.9e+02 Score=31.70 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=40.6
Q ss_pred CCEEEEEECCCC--eEEEEEeCCC-------cEEEEEeC---------CCeEEEEe--CCeEEEEECCCCceeeEE
Q 003221 172 PTAVRFYSFQSH--CYEHVLRFRS-------SVCMVRCS---------PRIVAVGL--ATQIYCFDALTLENKFSV 227 (838)
Q Consensus 172 p~tV~IWDl~tg--~~V~tL~f~s-------~V~sV~~s---------~~iLaV~l--~~~I~IwD~~t~e~l~tL 227 (838)
+-+|.+||++|+ +.++++.|+. -..+++++ ..++-++. ...|.+||+.+++-.+.+
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 458999999999 9999999864 34566655 22444444 347999999998865543
Done!