Query 003222
Match_columns 838
No_of_seqs 506 out of 3324
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 19:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0153 GalK Galactokinase [Ca 100.0 9.5E-53 2.1E-57 448.2 20.5 254 483-813 9-263 (390)
2 PLN02865 galactokinase 100.0 6.5E-45 1.4E-49 405.5 24.7 244 482-760 14-267 (423)
3 PTZ00290 galactokinase; Provis 100.0 4.6E-44 9.9E-49 402.2 28.6 296 483-826 18-350 (468)
4 PRK05322 galactokinase; Provis 100.0 1.3E-42 2.9E-47 388.5 23.9 233 484-759 7-240 (387)
5 PLN02521 galactokinase 100.0 2.4E-38 5.3E-43 360.7 27.0 232 485-759 37-278 (497)
6 PRK05101 galactokinase; Provis 100.0 5.3E-38 1.2E-42 351.2 28.8 234 483-760 7-245 (382)
7 PRK00555 galactokinase; Provis 100.0 2E-38 4.4E-43 351.9 24.8 214 498-757 3-219 (363)
8 TIGR00131 gal_kin galactokinas 100.0 1.4E-37 3.1E-42 349.5 24.3 232 485-759 6-238 (386)
9 PF13528 Glyco_trans_1_3: Glyc 100.0 4.5E-32 9.8E-37 298.0 28.1 311 16-346 1-317 (318)
10 PRK03817 galactokinase; Provis 100.0 5.4E-31 1.2E-35 292.9 22.9 210 499-757 2-211 (351)
11 PHA03392 egt ecdysteroid UDP-g 100.0 1.6E-28 3.5E-33 284.0 30.6 371 16-415 21-488 (507)
12 TIGR00549 mevalon_kin mevalona 100.0 1.1E-27 2.3E-32 257.9 16.9 180 502-739 1-180 (273)
13 PF00201 UDPGT: UDP-glucoronos 99.9 2.2E-29 4.8E-34 294.1 2.5 196 194-415 246-464 (500)
14 PRK12446 undecaprenyldiphospho 99.9 1.5E-25 3.2E-30 249.2 31.1 325 13-369 1-351 (352)
15 cd03784 GT1_Gtf_like This fami 99.9 4.3E-26 9.4E-31 258.8 24.6 325 16-349 1-372 (401)
16 KOG0631 Galactokinase [Carbohy 99.9 6.5E-27 1.4E-31 254.0 15.5 236 486-761 29-283 (489)
17 TIGR00661 MJ1255 conserved hyp 99.9 4.6E-25 1E-29 243.0 28.5 307 17-350 1-315 (321)
18 PLN02677 mevalonate kinase 99.9 4.5E-26 9.7E-31 252.5 17.9 206 498-739 3-244 (387)
19 TIGR01220 Pmev_kin_Gr_pos phos 99.9 1.9E-25 4.1E-30 248.0 20.4 198 499-738 2-229 (358)
20 PRK13412 fkp bifunctional fuco 99.9 1.6E-25 3.5E-30 267.4 19.0 200 496-739 608-840 (974)
21 COG0707 MurG UDP-N-acetylgluco 99.9 4.7E-23 1E-27 227.1 29.2 318 21-370 5-354 (357)
22 PLN02208 glycosyltransferase f 99.9 1.7E-22 3.7E-27 229.7 34.5 339 22-371 10-420 (442)
23 COG1819 Glycosyl transferases, 99.9 4.1E-24 8.9E-29 241.1 21.0 340 16-373 2-401 (406)
24 TIGR01426 MGT glycosyltransfer 99.9 3E-23 6.5E-28 235.0 27.8 335 24-371 3-390 (392)
25 KOG1511 Mevalonate kinase MVK/ 99.9 1.3E-24 2.8E-29 226.1 13.5 208 498-739 5-244 (397)
26 PRK03926 mevalonate kinase; Pr 99.9 9.5E-23 2.1E-27 222.6 20.2 171 498-738 2-172 (302)
27 PLN03007 UDP-glucosyltransfera 99.9 2.8E-21 6.1E-26 223.3 28.1 344 17-372 7-458 (482)
28 PLN00414 glycosyltransferase f 99.9 9.5E-21 2.1E-25 215.7 30.3 342 22-371 10-421 (446)
29 PLN02210 UDP-glucosyl transfer 99.9 1.5E-20 3.3E-25 215.0 31.6 334 16-371 9-432 (456)
30 COG1577 ERG12 Mevalonate kinas 99.9 5.2E-22 1.1E-26 211.9 16.9 184 499-739 2-185 (307)
31 PLN02670 transferase, transfer 99.9 2.6E-20 5.6E-25 212.6 31.7 343 22-372 12-464 (472)
32 PLN02173 UDP-glucosyl transfer 99.9 7.6E-20 1.7E-24 207.8 32.7 331 22-372 11-426 (449)
33 PLN02448 UDP-glycosyltransfera 99.9 4.3E-20 9.4E-25 212.4 30.7 342 13-372 8-435 (459)
34 PLN02764 glycosyltransferase f 99.9 1.1E-19 2.4E-24 205.9 32.3 346 16-371 6-426 (453)
35 PLN02410 UDP-glucoronosyl/UDP- 99.9 9.9E-20 2.1E-24 207.7 31.7 337 14-372 6-428 (451)
36 COG4671 Predicted glycosyl tra 99.9 1.2E-19 2.6E-24 190.5 28.0 337 13-374 7-392 (400)
37 PLN02992 coniferyl-alcohol glu 99.9 1.4E-19 3E-24 206.9 30.8 331 22-372 11-445 (481)
38 PLN02207 UDP-glycosyltransfera 99.8 9.4E-19 2E-23 199.7 33.2 342 13-372 1-443 (468)
39 PLN02562 UDP-glycosyltransfera 99.8 5.1E-19 1.1E-23 202.2 29.8 328 17-371 8-427 (448)
40 PLN03004 UDP-glycosyltransfera 99.8 6.2E-19 1.3E-23 200.5 30.3 165 194-371 235-438 (451)
41 PLN02554 UDP-glycosyltransfera 99.8 5.6E-19 1.2E-23 204.0 30.4 166 194-371 238-455 (481)
42 PTZ00298 mevalonate kinase; Pr 99.8 2.9E-20 6.2E-25 204.8 18.0 192 499-746 12-205 (328)
43 PLN02555 limonoid glucosyltran 99.8 1.4E-18 3.1E-23 199.0 32.4 331 22-371 13-446 (480)
44 PLN02863 UDP-glucoronosyl/UDP- 99.8 2E-18 4.4E-23 198.3 32.1 339 16-371 10-448 (477)
45 PLN00164 glucosyltransferase; 99.8 1.7E-18 3.7E-23 199.4 30.5 339 13-372 1-451 (480)
46 PLN02152 indole-3-acetate beta 99.8 1.6E-18 3.4E-23 197.4 28.0 336 13-371 1-433 (455)
47 COG2605 Predicted kinase relat 99.8 5.7E-20 1.2E-24 187.7 14.2 187 498-740 2-203 (333)
48 PLN02167 UDP-glycosyltransfera 99.8 6.4E-18 1.4E-22 194.9 30.7 166 194-371 243-449 (475)
49 PRK00726 murG undecaprenyldiph 99.8 6.2E-18 1.3E-22 189.0 28.8 324 16-371 2-355 (357)
50 PLN03015 UDP-glucosyl transfer 99.8 1.7E-17 3.7E-22 188.7 32.5 341 13-371 1-445 (470)
51 PLN02534 UDP-glycosyltransfera 99.8 5.8E-17 1.3E-21 186.1 33.1 343 16-371 9-463 (491)
52 cd03785 GT1_MurG MurG is an N- 99.8 2E-17 4.3E-22 184.0 28.2 301 18-350 2-325 (350)
53 KOG1192 UDP-glucuronosyl and U 99.8 1.2E-17 2.5E-22 195.3 26.0 184 191-388 242-463 (496)
54 PLN02605 monogalactosyldiacylg 99.8 8.4E-18 1.8E-22 189.8 23.2 241 108-370 90-378 (382)
55 TIGR03590 PseG pseudaminic aci 99.8 1.8E-17 4E-22 178.6 22.3 249 23-320 10-279 (279)
56 PRK13608 diacylglycerol glucos 99.8 3.8E-17 8.1E-22 185.0 25.3 321 16-371 6-369 (391)
57 PRK13609 diacylglycerol glucos 99.8 3.1E-17 6.7E-22 185.1 22.6 325 16-371 5-369 (380)
58 TIGR01133 murG undecaprenyldip 99.7 1.5E-15 3.2E-20 168.8 29.7 301 17-350 2-322 (348)
59 TIGR00215 lpxB lipid-A-disacch 99.7 1.5E-15 3.2E-20 171.4 20.7 300 17-350 7-348 (385)
60 TIGR00154 ispE 4-diphosphocyti 99.7 4.9E-16 1.1E-20 168.3 15.4 170 499-738 3-179 (293)
61 PRK00128 ipk 4-diphosphocytidy 99.7 7.9E-16 1.7E-20 166.7 16.6 170 498-738 3-177 (286)
62 PRK02534 4-diphosphocytidyl-2- 99.7 1.1E-15 2.4E-20 167.5 16.6 170 498-737 4-179 (312)
63 PF10509 GalKase_gal_bdg: Gala 99.7 4.6E-17 1E-21 127.1 3.3 50 486-536 3-52 (52)
64 COG3980 spsG Spore coat polysa 99.5 6.5E-13 1.4E-17 136.4 18.9 273 17-350 2-294 (318)
65 PF00288 GHMP_kinases_N: GHMP 99.5 6.4E-14 1.4E-18 117.2 8.4 67 633-701 1-67 (67)
66 PRK00025 lpxB lipid-A-disaccha 99.5 1.4E-12 3.1E-17 147.0 20.8 316 16-371 2-375 (380)
67 TIGR01219 Pmev_kin_ERG8 phosph 99.5 1.5E-12 3.2E-17 146.8 20.6 209 500-739 2-285 (454)
68 PF04101 Glyco_tran_28_C: Glyc 99.5 2.7E-14 5.9E-19 142.1 5.7 127 225-351 1-146 (167)
69 PRK01123 shikimate kinase; Pro 99.4 3.8E-12 8.2E-17 137.5 18.8 123 610-739 56-179 (282)
70 TIGR01920 Shik_kin_archae shik 99.4 1.3E-11 2.9E-16 131.5 20.0 118 611-734 46-164 (261)
71 TIGR03492 conserved hypothetic 99.4 1.7E-11 3.6E-16 138.8 21.0 321 20-370 2-395 (396)
72 PRK00343 ipk 4-diphosphocytidy 99.3 2.3E-11 4.9E-16 130.3 15.5 167 498-738 7-179 (271)
73 PRK14611 4-diphosphocytidyl-2- 99.3 3.1E-11 6.7E-16 129.9 16.2 114 609-738 60-173 (275)
74 PLN02871 UDP-sulfoquinovose:DA 99.3 1.9E-09 4.1E-14 125.2 28.2 308 13-351 56-402 (465)
75 PLN02451 homoserine kinase 99.2 6.5E-11 1.4E-15 131.9 14.1 120 611-738 115-238 (370)
76 cd03814 GT1_like_2 This family 99.2 2.2E-09 4.7E-14 118.6 25.2 289 27-350 14-333 (364)
77 KOG0631 Galactokinase [Carbohy 99.2 6.4E-14 1.4E-18 153.3 -12.7 427 115-621 58-486 (489)
78 PRK14608 4-diphosphocytidyl-2- 99.2 6.4E-10 1.4E-14 120.5 17.4 115 609-738 69-183 (290)
79 cd04962 GT1_like_5 This family 99.2 3.8E-09 8.2E-14 118.1 24.3 131 211-350 185-337 (371)
80 COG0083 ThrB Homoserine kinase 99.1 7.4E-10 1.6E-14 117.7 15.7 120 612-744 60-186 (299)
81 cd03816 GT1_ALG1_like This fam 99.1 2.9E-08 6.2E-13 113.6 26.8 119 221-349 229-381 (415)
82 cd03825 GT1_wcfI_like This fam 99.1 2.3E-08 4.9E-13 111.1 24.9 134 209-350 177-331 (365)
83 cd03817 GT1_UGDG_like This fam 99.1 3.2E-08 7E-13 109.2 25.9 296 24-351 11-345 (374)
84 TIGR00191 thrB homoserine kina 99.1 1.3E-09 2.8E-14 119.1 14.1 116 610-738 60-178 (302)
85 cd03808 GT1_cap1E_like This fa 99.0 7.7E-08 1.7E-12 105.2 27.0 121 222-350 186-330 (359)
86 PRK14616 4-diphosphocytidyl-2- 99.0 5.4E-09 1.2E-13 113.3 17.3 113 610-738 64-177 (287)
87 cd03794 GT1_wbuB_like This fam 99.0 8.2E-08 1.8E-12 106.3 27.3 121 222-350 218-366 (394)
88 cd04951 GT1_WbdM_like This fam 99.0 6.6E-08 1.4E-12 107.2 26.0 129 211-350 176-327 (360)
89 cd03820 GT1_amsD_like This fam 99.0 7.9E-08 1.7E-12 104.6 26.1 121 222-350 176-320 (348)
90 PF04007 DUF354: Protein of un 99.0 1.9E-07 4.2E-12 102.4 28.7 307 16-370 1-333 (335)
91 TIGR03088 stp2 sugar transfera 99.0 4.2E-08 9.1E-13 110.3 24.1 295 16-350 2-339 (374)
92 cd03823 GT1_ExpE7_like This fa 99.0 5.1E-08 1.1E-12 107.3 24.2 121 222-350 189-330 (359)
93 PRK03188 4-diphosphocytidyl-2- 99.0 7.7E-09 1.7E-13 112.9 17.1 104 611-730 65-168 (300)
94 TIGR00144 beta_RFAP_syn beta-R 99.0 1.2E-08 2.5E-13 112.2 18.0 111 610-735 64-192 (324)
95 PRK14614 4-diphosphocytidyl-2- 99.0 8.4E-09 1.8E-13 111.4 15.6 112 611-738 67-178 (280)
96 cd03819 GT1_WavL_like This fam 99.0 1.1E-07 2.3E-12 105.5 24.9 278 27-348 10-329 (355)
97 cd03812 GT1_CapH_like This fam 99.0 9.6E-08 2.1E-12 106.0 24.5 129 214-352 183-334 (358)
98 cd03807 GT1_WbnK_like This fam 99.0 1.4E-07 3E-12 103.6 25.5 130 210-350 180-333 (365)
99 PRK14609 4-diphosphocytidyl-2- 99.0 8.7E-09 1.9E-13 110.4 15.2 114 608-738 62-176 (269)
100 PRK15179 Vi polysaccharide bio 98.9 2E-07 4.4E-12 111.6 27.0 121 223-349 516-659 (694)
101 PRK14612 4-diphosphocytidyl-2- 98.9 2E-08 4.3E-13 108.3 16.1 164 499-738 4-172 (276)
102 cd03801 GT1_YqgM_like This fam 98.9 1.8E-07 4E-12 102.2 24.2 293 26-350 13-342 (374)
103 PRK10307 putative glycosyl tra 98.9 1.1E-06 2.4E-11 100.3 31.3 131 211-350 217-374 (412)
104 cd03811 GT1_WabH_like This fam 98.9 5.2E-07 1.1E-11 98.2 27.3 117 222-346 187-326 (353)
105 PRK01212 homoserine kinase; Pr 98.9 1.5E-08 3.3E-13 110.7 14.9 113 611-737 63-177 (301)
106 PRK14615 4-diphosphocytidyl-2- 98.9 4.1E-08 8.8E-13 106.8 17.8 170 497-738 6-182 (296)
107 TIGR00236 wecB UDP-N-acetylglu 98.9 5.5E-07 1.2E-11 101.2 26.7 238 107-370 75-364 (365)
108 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 4.1E-07 9E-12 101.8 25.2 127 214-351 190-339 (363)
109 COG1685 Archaeal shikimate kin 98.9 1E-07 2.2E-12 98.0 17.9 176 499-745 4-181 (278)
110 TIGR03449 mycothiol_MshA UDP-N 98.8 7.7E-07 1.7E-11 101.2 26.0 300 27-350 20-369 (405)
111 cd03821 GT1_Bme6_like This fam 98.8 1.1E-06 2.4E-11 96.8 26.1 126 214-350 194-346 (375)
112 cd03800 GT1_Sucrose_synthase T 98.8 4.9E-07 1.1E-11 101.9 23.5 128 214-350 211-369 (398)
113 cd03805 GT1_ALG2_like This fam 98.8 1.2E-06 2.5E-11 99.0 26.3 120 222-350 209-365 (392)
114 PRK05749 3-deoxy-D-manno-octul 98.8 7E-07 1.5E-11 102.5 23.8 81 264-350 304-389 (425)
115 cd03799 GT1_amsK_like This is 98.8 1.3E-06 2.8E-11 96.6 24.6 121 222-350 177-328 (355)
116 cd03796 GT1_PIG-A_like This fa 98.8 1.3E-06 2.8E-11 99.3 25.2 119 222-350 191-334 (398)
117 PTZ00299 homoserine kinase; Pr 98.8 4.9E-08 1.1E-12 107.2 12.4 113 610-732 61-178 (336)
118 cd03798 GT1_wlbH_like This fam 98.8 1.9E-06 4.1E-11 94.6 25.2 121 222-350 200-345 (377)
119 PRK00650 4-diphosphocytidyl-2- 98.7 2.7E-07 5.9E-12 98.8 16.6 111 610-736 61-171 (288)
120 cd03818 GT1_ExpC_like This fam 98.7 3.2E-06 7E-11 96.0 26.2 82 261-350 280-367 (396)
121 TIGR01240 mevDPdecarb diphosph 98.7 1.5E-07 3.2E-12 102.3 13.6 81 610-702 66-146 (305)
122 cd03795 GT1_like_4 This family 98.7 3.5E-06 7.5E-11 93.2 24.6 120 222-350 189-333 (357)
123 cd03822 GT1_ecORF704_like This 98.7 3.7E-06 7.9E-11 93.0 24.0 119 223-350 184-335 (366)
124 cd03802 GT1_AviGT4_like This f 98.7 2.8E-06 6.2E-11 93.2 22.6 114 225-348 172-307 (335)
125 PLN02275 transferase, transfer 98.7 6.1E-06 1.3E-10 93.0 25.3 92 246-347 260-371 (371)
126 cd03792 GT1_Trehalose_phosphor 98.6 3E-06 6.6E-11 95.3 22.8 128 212-350 179-338 (372)
127 cd05844 GT1_like_7 Glycosyltra 98.6 3.2E-06 6.9E-11 94.3 22.1 119 224-350 188-337 (367)
128 PRK09922 UDP-D-galactose:(gluc 98.6 1.7E-06 3.6E-11 97.0 19.5 122 224-353 180-328 (359)
129 PRK00654 glgA glycogen synthas 98.5 1.4E-05 3E-10 93.0 24.6 137 210-348 268-427 (466)
130 TIGR02472 sucr_P_syn_N sucrose 98.5 3.1E-05 6.8E-10 89.3 26.1 83 260-350 315-407 (439)
131 PRK15427 colanic acid biosynth 98.5 1.4E-05 3E-10 91.2 22.5 121 222-350 220-372 (406)
132 PRK15490 Vi polysaccharide bio 98.5 3E-05 6.6E-10 89.6 24.7 220 95-333 257-524 (578)
133 TIGR02095 glgA glycogen/starch 98.5 2.7E-05 5.9E-10 90.7 25.0 131 210-348 276-436 (473)
134 PRK14610 4-diphosphocytidyl-2- 98.5 4.3E-06 9.3E-11 90.4 16.6 115 610-743 65-181 (283)
135 PRK14089 ipid-A-disaccharide s 98.4 2E-06 4.4E-11 95.2 12.3 119 222-345 166-315 (347)
136 PRK15484 lipopolysaccharide 1, 98.4 6.9E-05 1.5E-09 84.8 24.2 132 210-350 180-345 (380)
137 PLN02846 digalactosyldiacylgly 98.4 6.2E-05 1.3E-09 86.3 23.6 113 226-350 230-364 (462)
138 KOG3349 Predicted glycosyltran 98.4 5E-06 1.1E-10 78.2 12.0 111 224-334 4-137 (170)
139 PF02684 LpxB: Lipid-A-disacch 98.4 2.4E-05 5.3E-10 87.2 19.5 293 21-350 3-341 (373)
140 PRK10125 putative glycosyl tra 98.3 6.8E-05 1.5E-09 85.5 23.4 95 238-341 260-363 (405)
141 PRK04181 4-diphosphocytidyl-2- 98.3 6.3E-06 1.4E-10 87.5 13.9 118 610-743 61-183 (257)
142 cd01635 Glycosyltransferase_GT 98.3 1.5E-05 3.2E-10 81.6 16.2 52 261-312 160-218 (229)
143 COG0763 LpxB Lipid A disacchar 98.3 4.8E-05 1E-09 83.2 20.5 296 16-350 2-345 (381)
144 TIGR02149 glgA_Coryne glycogen 98.3 9E-05 1.9E-09 83.5 23.5 135 209-350 187-353 (388)
145 cd03809 GT1_mtfB_like This fam 98.3 3.3E-05 7.2E-10 85.3 19.3 117 224-350 195-337 (365)
146 cd04955 GT1_like_6 This family 98.3 0.00017 3.7E-09 80.0 25.1 125 212-350 183-331 (363)
147 PRK01021 lpxB lipid-A-disaccha 98.3 0.0001 2.3E-09 85.7 22.9 226 106-350 298-572 (608)
148 KOG4644 L-fucose kinase [Carbo 98.2 1.2E-05 2.5E-10 88.4 13.2 103 630-736 690-806 (948)
149 TIGR03087 stp1 sugar transfera 98.2 5.3E-05 1.1E-09 86.1 19.2 95 246-350 258-363 (397)
150 PRK14099 glycogen synthase; Pr 98.2 0.00037 8E-09 81.4 25.6 134 211-346 281-441 (485)
151 TIGR02470 sucr_synth sucrose s 98.2 0.0013 2.9E-08 79.5 30.6 126 213-347 538-707 (784)
152 TIGR03568 NeuC_NnaA UDP-N-acet 98.2 0.00069 1.5E-08 76.2 26.0 216 106-348 81-338 (365)
153 cd03791 GT1_Glycogen_synthase_ 98.1 0.00014 3E-09 84.8 20.5 138 210-349 281-442 (476)
154 cd03804 GT1_wbaZ_like This fam 98.1 5.6E-05 1.2E-09 84.1 15.8 117 226-350 197-327 (351)
155 TIGR02468 sucrsPsyn_pln sucros 98.1 0.00062 1.3E-08 84.2 25.6 83 260-350 546-638 (1050)
156 PLN02407 diphosphomevalonate d 98.1 4E-05 8.7E-10 83.3 13.7 60 633-702 105-167 (343)
157 PLN02316 synthase/transferase 98.0 0.003 6.5E-08 78.4 29.6 137 210-349 826-998 (1036)
158 PLN02501 digalactosyldiacylgly 98.0 0.00024 5.1E-09 83.5 18.9 220 108-350 424-682 (794)
159 PRK14613 4-diphosphocytidyl-2- 98.0 6.1E-05 1.3E-09 82.0 12.5 109 610-737 74-183 (297)
160 cd04950 GT1_like_1 Glycosyltra 98.0 0.00091 2E-08 75.5 22.3 115 224-350 205-341 (373)
161 cd03806 GT1_ALG11_like This fa 97.9 0.0023 5E-08 73.4 25.5 119 223-350 236-393 (419)
162 COG1817 Uncharacterized protei 97.9 0.0021 4.6E-08 68.1 22.2 281 27-346 10-312 (346)
163 PRK05905 hypothetical protein; 97.9 0.00024 5.1E-09 75.3 15.2 115 610-743 66-182 (258)
164 PLN02939 transferase, transfer 97.9 0.0082 1.8E-07 73.5 29.9 137 210-348 763-930 (977)
165 COG4542 PduX Protein involved 97.9 5.7E-05 1.2E-09 77.0 9.4 101 629-745 81-181 (293)
166 PLN00142 sucrose synthase 97.8 0.0035 7.5E-08 76.1 25.2 125 214-347 562-730 (815)
167 PF03033 Glyco_transf_28: Glyc 97.8 1.1E-05 2.4E-10 77.2 3.2 113 22-147 4-130 (139)
168 PF02350 Epimerase_2: UDP-N-ac 97.8 0.00013 2.9E-09 81.2 11.7 117 221-349 178-318 (346)
169 COG1947 IspE 4-diphosphocytidy 97.8 0.00086 1.9E-08 71.5 16.7 109 611-735 67-175 (289)
170 PF00534 Glycos_transf_1: Glyc 97.7 0.00012 2.7E-09 72.4 9.2 132 210-350 2-159 (172)
171 cd03813 GT1_like_3 This family 97.7 0.0011 2.4E-08 77.3 17.9 120 222-350 291-443 (475)
172 COG3407 MVD1 Mevalonate pyroph 97.6 0.00051 1.1E-08 74.2 12.4 81 610-702 71-151 (329)
173 COG0381 WecB UDP-N-acetylgluco 97.6 0.014 3.1E-07 64.4 23.1 100 262-371 262-372 (383)
174 cd04949 GT1_gtfA_like This fam 97.6 0.0013 2.8E-08 73.7 15.6 120 224-350 204-346 (372)
175 COG3890 ERG8 Phosphomevalonate 97.5 0.00023 5.1E-09 73.4 7.8 92 643-739 107-207 (337)
176 COG1829 Predicted archaeal kin 97.4 0.0017 3.8E-08 67.7 12.5 119 630-760 73-197 (283)
177 PLN02949 transferase, transfer 97.3 0.032 7E-07 64.8 22.4 95 246-349 302-422 (463)
178 COG5017 Uncharacterized conser 96.9 0.0087 1.9E-07 55.8 10.0 108 226-334 2-126 (161)
179 KOG2833 Mevalonate pyrophospha 96.7 0.0056 1.2E-07 64.5 8.7 62 631-702 105-166 (395)
180 PF13692 Glyco_trans_1_4: Glyc 96.7 0.0036 7.8E-08 59.2 6.2 115 225-349 3-135 (135)
181 TIGR02918 accessory Sec system 96.5 0.016 3.4E-07 68.0 11.5 120 223-348 318-466 (500)
182 PHA01633 putative glycosyl tra 96.4 0.012 2.6E-07 65.0 9.2 138 211-350 135-308 (335)
183 PRK14098 glycogen synthase; Pr 96.3 0.026 5.7E-07 66.1 11.7 135 210-348 292-450 (489)
184 cd04946 GT1_AmsK_like This fam 96.1 0.028 6E-07 64.3 10.4 122 222-350 228-378 (407)
185 PRK09814 beta-1,6-galactofuran 96.0 0.31 6.7E-06 54.1 18.1 110 225-346 170-297 (333)
186 COG1907 Predicted archaeal sug 96.0 0.027 5.9E-07 59.3 8.6 98 630-738 70-176 (312)
187 PF06258 Mito_fiss_Elm1: Mitoc 95.8 0.83 1.8E-05 50.2 19.7 97 262-371 209-309 (311)
188 COG1519 KdtA 3-deoxy-D-manno-o 95.7 1.2 2.6E-05 50.0 20.3 81 263-350 301-387 (419)
189 KOG1537 Homoserine kinase [Ami 95.2 0.028 6.2E-07 57.9 5.1 114 630-745 93-238 (355)
190 PHA01630 putative group 1 glyc 94.2 0.29 6.3E-06 54.3 10.7 68 246-313 172-247 (331)
191 KOG4519 Phosphomevalonate kina 93.7 1.3 2.8E-05 47.5 13.5 60 643-702 152-224 (459)
192 COG2099 CobK Precorrin-6x redu 93.6 2.4 5.2E-05 44.4 15.2 146 111-308 59-231 (257)
193 TIGR02195 heptsyl_trn_II lipop 93.1 8.5 0.00018 42.5 20.0 93 213-306 164-277 (334)
194 PF13477 Glyco_trans_4_2: Glyc 93.0 1.1 2.4E-05 42.3 11.1 100 17-144 1-105 (139)
195 PF02571 CbiJ: Precorrin-6x re 92.8 15 0.00033 39.0 20.3 151 111-310 59-230 (249)
196 PF08660 Alg14: Oligosaccharid 92.7 0.95 2.1E-05 45.1 10.5 39 110-148 84-131 (170)
197 COG3660 Predicted nucleoside-d 92.2 18 0.00038 38.3 20.5 85 274-371 239-326 (329)
198 PF13579 Glyco_trans_4_4: Glyc 92.0 0.6 1.3E-05 44.5 8.0 97 28-145 2-103 (160)
199 PRK10916 ADP-heptose:LPS hepto 91.9 12 0.00026 41.6 19.4 91 214-306 171-287 (348)
200 TIGR00715 precor6x_red precorr 91.9 20 0.00043 38.2 22.1 49 261-309 174-233 (256)
201 PF13844 Glyco_transf_41: Glyc 91.6 0.48 1E-05 54.5 7.6 112 214-328 276-412 (468)
202 cd03789 GT1_LPS_heptosyltransf 90.4 16 0.00034 39.2 17.8 36 18-54 2-39 (279)
203 PF01975 SurE: Survival protei 90.3 1.5 3.3E-05 44.7 9.1 36 16-53 1-36 (196)
204 COG3914 Spy Predicted O-linked 90.1 1.3 2.8E-05 51.3 9.2 111 214-330 421-561 (620)
205 KOG1111 N-acetylglucosaminyltr 90.0 6.9 0.00015 43.0 14.1 67 246-312 225-308 (426)
206 COG0859 RfaF ADP-heptose:LPS h 89.9 36 0.00078 37.7 20.6 83 223-306 175-277 (334)
207 PF06925 MGDG_synth: Monogalac 89.7 0.38 8.3E-06 47.8 4.3 41 107-147 78-126 (169)
208 TIGR02400 trehalose_OtsA alpha 89.2 0.83 1.8E-05 53.0 7.1 68 272-350 348-423 (456)
209 PF13439 Glyco_transf_4: Glyco 89.2 3.8 8.2E-05 39.6 10.9 27 27-53 12-38 (177)
210 PRK10422 lipopolysaccharide co 88.2 47 0.001 36.9 22.5 84 222-306 182-288 (352)
211 PF01075 Glyco_transf_9: Glyco 85.1 5.8 0.00012 41.6 10.2 84 221-306 103-209 (247)
212 TIGR02201 heptsyl_trn_III lipo 84.4 71 0.0015 35.3 20.4 84 222-306 180-286 (344)
213 PRK08057 cobalt-precorrin-6x r 81.2 79 0.0017 33.6 20.0 84 224-309 128-225 (248)
214 cd03788 GT1_TPS Trehalose-6-Ph 80.7 1.6 3.5E-05 50.7 4.2 68 272-350 353-428 (460)
215 PF05159 Capsule_synth: Capsul 79.7 3.6 7.8E-05 44.1 6.2 48 262-310 182-229 (269)
216 cd00550 ArsA_ATPase Oxyanion-t 78.7 13 0.00029 39.4 10.1 37 18-54 2-38 (254)
217 COG0297 GlgA Glycogen synthase 77.7 9.4 0.0002 44.5 9.0 136 210-348 279-441 (487)
218 COG4370 Uncharacterized protei 77.0 5.3 0.00012 42.8 6.1 75 273-352 305-382 (412)
219 PLN03063 alpha,alpha-trehalose 75.6 5.5 0.00012 49.6 6.8 68 273-350 369-444 (797)
220 COG0003 ArsA Predicted ATPase 74.9 25 0.00055 38.8 11.0 39 17-55 3-41 (322)
221 cd03793 GT1_Glycogen_synthase_ 74.9 7.7 0.00017 45.9 7.3 71 275-347 470-550 (590)
222 TIGR02193 heptsyl_trn_I lipopo 74.3 15 0.00033 40.2 9.3 125 216-347 172-319 (319)
223 PF02374 ArsA_ATPase: Anion-tr 73.7 16 0.00035 40.0 9.2 40 16-55 1-40 (305)
224 COG0496 SurE Predicted acid ph 71.9 37 0.0008 36.0 10.8 35 16-53 1-35 (252)
225 PF07429 Glyco_transf_56: 4-al 71.4 51 0.0011 36.5 12.0 81 262-350 245-334 (360)
226 COG0438 RfaG Glycosyltransfera 70.5 11 0.00024 39.9 7.0 118 225-350 200-343 (381)
227 PRK10017 colanic acid biosynth 69.9 14 0.0003 42.6 7.9 70 275-350 323-393 (426)
228 PRK08248 O-acetylhomoserine am 68.7 0.72 1.6E-05 53.2 -2.9 44 404-452 378-423 (431)
229 PF04464 Glyphos_transf: CDP-G 68.0 7.4 0.00016 43.7 5.2 97 210-307 179-296 (369)
230 PLN02509 cystathionine beta-ly 67.2 0.83 1.8E-05 53.0 -2.7 44 404-452 412-457 (464)
231 TIGR01326 OAH_OAS_sulfhy OAH/O 66.4 0.92 2E-05 52.1 -2.6 47 401-452 367-415 (418)
232 PRK07049 methionine gamma-lyas 65.9 0.97 2.1E-05 52.0 -2.5 47 401-452 374-422 (427)
233 TIGR03713 acc_sec_asp1 accesso 65.3 6.1 0.00013 46.7 3.9 76 262-350 409-489 (519)
234 PRK06176 cystathionine gamma-s 64.5 0.94 2E-05 51.3 -2.9 43 405-452 330-374 (380)
235 PRK02797 4-alpha-L-fucosyltran 63.9 42 0.00092 36.6 9.5 78 262-347 206-292 (322)
236 PRK07812 O-acetylhomoserine am 63.1 2.9 6.3E-05 48.2 0.7 45 404-453 382-428 (436)
237 PRK13932 stationary phase surv 62.2 87 0.0019 33.4 11.4 36 15-53 5-40 (257)
238 PRK07504 O-succinylhomoserine 62.1 1.1 2.4E-05 51.0 -2.9 44 404-452 346-391 (398)
239 COG0052 RpsB Ribosomal protein 62.1 23 0.00049 37.2 6.8 28 119-146 157-187 (252)
240 PRK08249 cystathionine gamma-s 62.0 1.2 2.7E-05 50.7 -2.6 45 404-453 344-390 (398)
241 PRK06434 cystathionine gamma-l 61.7 1.1 2.4E-05 50.8 -3.1 44 404-452 335-380 (384)
242 PRK12311 rpsB 30S ribosomal pr 60.1 38 0.00083 37.3 8.6 29 118-146 152-183 (326)
243 PRK08045 cystathionine gamma-s 59.6 1.4 3.1E-05 50.0 -2.6 45 404-453 333-379 (386)
244 PRK07671 cystathionine beta-ly 59.0 1.3 2.8E-05 50.1 -3.1 44 404-452 329-374 (377)
245 PF00551 Formyl_trans_N: Formy 58.9 33 0.00072 34.4 7.4 35 16-54 1-38 (181)
246 PRK00346 surE 5'(3')-nucleotid 58.7 1.1E+02 0.0023 32.6 11.4 34 17-53 2-35 (250)
247 PRK08133 O-succinylhomoserine 58.5 1.6 3.4E-05 49.7 -2.5 45 403-452 340-386 (390)
248 KOG0853 Glycosyltransferase [C 58.5 4.1 8.8E-05 47.1 0.8 82 275-363 361-448 (495)
249 PRK05613 O-acetylhomoserine am 58.4 1.4 2.9E-05 51.0 -3.1 32 420-452 399-432 (437)
250 PRK06767 methionine gamma-lyas 58.3 1.9 4E-05 49.0 -2.0 44 404-452 336-381 (386)
251 PRK06084 O-acetylhomoserine am 56.7 1.7 3.6E-05 50.1 -2.8 44 404-452 373-418 (425)
252 PRK08861 cystathionine gamma-s 56.4 1.7 3.6E-05 49.4 -2.7 33 420-453 346-380 (388)
253 PRK08134 O-acetylhomoserine am 56.0 1.6 3.5E-05 50.3 -3.0 44 405-453 379-424 (433)
254 PF13524 Glyco_trans_1_2: Glyc 55.5 38 0.00083 29.3 6.5 53 288-350 11-63 (92)
255 PRK05994 O-acetylhomoserine am 54.8 1.9 4.1E-05 49.7 -2.7 43 405-452 378-422 (427)
256 PRK06460 hypothetical protein; 54.3 1.8 3.8E-05 49.0 -3.0 43 405-452 326-370 (376)
257 PRK05939 hypothetical protein; 54.1 2 4.3E-05 49.0 -2.6 43 405-452 348-392 (397)
258 TIGR01329 cysta_beta_ly_E cyst 53.8 2.1 4.5E-05 48.5 -2.5 43 405-452 327-371 (378)
259 PRK13933 stationary phase surv 53.7 2.1E+02 0.0046 30.4 12.6 34 17-53 2-35 (253)
260 KOG0053 Cystathionine beta-lya 53.1 3.2 7E-05 46.7 -1.1 47 400-452 354-402 (409)
261 TIGR01328 met_gam_lyase methio 53.0 2.6 5.7E-05 47.9 -1.9 32 420-452 353-386 (391)
262 TIGR02919 accessory Sec system 52.0 33 0.00071 39.7 6.8 79 262-350 328-412 (438)
263 PRK08776 cystathionine gamma-s 50.8 2.1 4.5E-05 49.0 -3.2 44 405-453 342-387 (405)
264 PRK07503 methionine gamma-lyas 50.6 3 6.5E-05 47.6 -1.9 33 420-453 359-393 (403)
265 TIGR02080 O_succ_thio_ly O-suc 50.0 2.5 5.4E-05 47.9 -2.7 43 405-452 333-377 (382)
266 PRK06234 methionine gamma-lyas 50.0 2.8 6.1E-05 47.8 -2.3 44 405-453 349-394 (400)
267 COG0626 MetC Cystathionine bet 49.7 3.1 6.8E-05 47.0 -1.9 44 404-452 345-390 (396)
268 cd02037 MRP-like MRP (Multiple 49.4 95 0.0021 30.4 8.9 36 18-53 2-37 (169)
269 PRK06702 O-acetylhomoserine am 48.9 2.8 6.2E-05 48.2 -2.5 40 408-452 379-420 (432)
270 PF01053 Cys_Met_Meta_PP: Cys/ 48.0 1.4 3.1E-05 49.9 -5.0 44 404-452 338-383 (386)
271 TIGR01325 O_suc_HS_sulf O-succ 45.7 2.9 6.3E-05 47.3 -3.0 40 408-452 337-378 (380)
272 TIGR00087 surE 5'/3'-nucleotid 45.0 2.2E+02 0.0047 30.2 11.0 34 17-53 2-35 (244)
273 PRK08574 cystathionine gamma-s 44.5 3.3 7.1E-05 47.0 -2.9 43 405-452 336-380 (385)
274 PRK05986 cob(I)alamin adenolsy 43.8 2.5E+02 0.0055 28.5 10.8 31 22-52 28-58 (191)
275 PRK13935 stationary phase surv 41.7 3.7E+02 0.0079 28.7 12.1 34 17-53 2-35 (253)
276 cd01425 RPS2 Ribosomal protein 41.5 1E+02 0.0023 31.2 7.9 27 28-54 40-66 (193)
277 PRK13934 stationary phase surv 40.9 3.5E+02 0.0076 29.1 11.8 34 17-53 2-35 (266)
278 cd00561 CobA_CobO_BtuR ATP:cor 40.1 3.2E+02 0.007 26.9 10.7 30 22-51 8-37 (159)
279 PRK10964 ADP-heptose:LPS hepto 39.4 1E+02 0.0022 33.8 8.0 36 17-53 2-39 (322)
280 COG2327 WcaK Polysaccharide py 39.4 91 0.002 35.2 7.5 82 262-350 266-351 (385)
281 PF03641 Lysine_decarbox: Poss 38.9 63 0.0014 30.6 5.5 50 276-325 50-111 (133)
282 PRK07810 O-succinylhomoserine 38.8 4.6 0.0001 46.1 -2.8 32 420-452 367-400 (403)
283 PRK14501 putative bifunctional 38.7 26 0.00057 43.3 3.6 68 272-350 354-429 (726)
284 PF00448 SRP54: SRP54-type pro 38.4 2.3E+02 0.0051 28.7 9.9 35 20-54 5-39 (196)
285 PF04413 Glycos_transf_N: 3-De 37.8 60 0.0013 32.8 5.4 91 23-144 27-124 (186)
286 PF12000 Glyco_trans_4_3: Gkyc 37.8 3.2E+02 0.0069 27.3 10.4 31 116-146 64-96 (171)
287 PRK07269 cystathionine gamma-s 37.6 4.3 9.3E-05 45.7 -3.2 32 420-452 327-360 (364)
288 TIGR00730 conserved hypothetic 37.1 65 0.0014 32.4 5.4 50 276-325 93-153 (178)
289 PRK05299 rpsB 30S ribosomal pr 35.0 1.8E+02 0.0038 31.1 8.6 29 118-146 157-188 (258)
290 PF02441 Flavoprotein: Flavopr 34.9 53 0.0011 30.9 4.2 34 17-52 2-35 (129)
291 TIGR00725 conserved hypothetic 34.9 60 0.0013 31.9 4.7 39 275-313 86-129 (159)
292 PRK08247 cystathionine gamma-s 34.3 5.7 0.00012 44.7 -3.0 32 420-452 327-360 (366)
293 PLN02242 methionine gamma-lyas 33.0 6.1 0.00013 45.4 -3.0 45 404-453 365-412 (418)
294 TIGR02398 gluc_glyc_Psyn gluco 32.7 94 0.002 36.5 6.6 65 275-350 377-449 (487)
295 CHL00067 rps2 ribosomal protei 31.6 2.2E+02 0.0048 29.8 8.5 29 118-146 161-192 (230)
296 KOG0780 Signal recognition par 31.4 67 0.0015 36.1 4.7 38 17-54 102-139 (483)
297 PRK13931 stationary phase surv 31.1 4.4E+02 0.0096 28.2 10.8 33 114-146 83-129 (261)
298 KOG2825 Putative arsenite-tran 30.5 1.5E+02 0.0032 31.5 6.7 41 13-55 17-58 (323)
299 cd00614 CGS_like CGS_like: Cys 30.2 7.1 0.00015 43.9 -3.1 25 428-452 340-366 (369)
300 PF15024 Glyco_transf_18: Glyc 30.1 74 0.0016 37.5 5.1 92 260-351 320-432 (559)
301 PF05014 Nuc_deoxyrib_tr: Nucl 30.1 69 0.0015 29.2 4.0 34 275-308 57-98 (113)
302 PF07355 GRDB: Glycine/sarcosi 29.4 1.1E+02 0.0023 34.0 5.9 39 106-144 68-117 (349)
303 PF12146 Hydrolase_4: Putative 29.4 94 0.002 26.6 4.5 32 18-50 18-49 (79)
304 PRK08114 cystathionine beta-ly 29.0 10 0.00023 43.1 -2.0 25 428-452 363-389 (395)
305 PF05728 UPF0227: Uncharacteri 28.8 4.2E+02 0.0092 26.7 9.8 80 20-144 3-87 (187)
306 COG2120 Uncharacterized protei 28.0 1.5E+02 0.0033 31.1 6.7 21 33-53 27-47 (237)
307 TIGR01011 rpsB_bact ribosomal 27.9 2.5E+02 0.0055 29.3 8.2 29 118-146 155-186 (225)
308 COG4088 Predicted nucleotide k 27.5 58 0.0013 33.5 3.2 33 20-52 5-37 (261)
309 PRK07414 cob(I)yrinic acid a,c 27.4 4.2E+02 0.0092 26.6 9.2 40 13-52 18-57 (178)
310 PRK01077 cobyrinic acid a,c-di 27.4 4.1E+02 0.0089 30.8 10.7 37 18-54 6-42 (451)
311 PRK07811 cystathionine gamma-s 27.2 13 0.00028 42.3 -1.7 25 428-452 358-384 (388)
312 cd03109 DTBS Dethiobiotin synt 26.9 95 0.002 29.4 4.5 36 19-54 2-37 (134)
313 PRK08305 spoVFB dipicolinate s 26.4 1E+02 0.0022 31.5 4.7 36 16-53 6-42 (196)
314 PRK13234 nifH nitrogenase redu 26.3 1.2E+02 0.0027 32.8 5.9 32 23-54 11-42 (295)
315 PRK00994 F420-dependent methyl 26.3 83 0.0018 32.8 4.0 36 111-146 53-95 (277)
316 TIGR00162 conserved hypothetic 26.1 2.6E+02 0.0057 28.2 7.8 61 614-684 99-161 (188)
317 PRK09028 cystathionine beta-ly 25.7 13 0.00029 42.2 -1.9 26 428-453 357-384 (394)
318 PRK06849 hypothetical protein; 25.7 2.6E+02 0.0057 31.5 8.7 35 15-54 4-38 (389)
319 COG2185 Sbm Methylmalonyl-CoA 25.6 83 0.0018 30.4 3.7 39 13-52 10-48 (143)
320 PRK02261 methylaspartate mutas 25.4 1.2E+02 0.0025 29.1 4.8 40 13-53 1-40 (137)
321 cd02032 Bchl_like This family 25.3 98 0.0021 32.9 4.8 38 16-54 1-38 (267)
322 PRK10037 cell division protein 25.2 1.1E+02 0.0024 32.2 5.1 38 17-54 3-40 (250)
323 TIGR00708 cobA cob(I)alamin ad 25.0 6.9E+02 0.015 24.9 10.3 30 22-51 11-40 (173)
324 PRK11519 tyrosine kinase; Prov 24.9 5.3E+02 0.012 31.9 11.6 38 16-53 527-564 (719)
325 COG0541 Ffh Signal recognition 24.3 5.1E+02 0.011 29.8 10.1 38 15-53 100-137 (451)
326 PRK08064 cystathionine beta-ly 23.4 12 0.00027 42.4 -2.8 33 420-453 345-379 (390)
327 TIGR01917 gly_red_sel_B glycin 23.3 1.7E+02 0.0036 33.5 6.0 40 105-144 63-113 (431)
328 TIGR01918 various_sel_PB selen 23.1 1.7E+02 0.0036 33.4 6.0 39 106-144 64-113 (431)
329 KOG0832 Mitochondrial/chloropl 23.0 99 0.0021 32.1 3.9 112 21-144 85-202 (251)
330 PRK00207 sulfur transfer compl 22.8 1.5E+02 0.0032 28.0 4.9 35 16-50 3-38 (128)
331 PF13614 AAA_31: AAA domain; P 22.3 1.7E+02 0.0036 27.9 5.4 35 18-52 3-37 (157)
332 PRK05647 purN phosphoribosylgl 22.2 1.7E+02 0.0036 30.0 5.5 15 111-125 73-87 (200)
333 PRK05632 phosphate acetyltrans 22.0 1E+03 0.022 29.2 13.2 35 18-52 5-39 (684)
334 PF01656 CbiA: CobQ/CobB/MinD/ 21.8 1.5E+02 0.0033 29.2 5.1 37 18-54 1-37 (195)
335 cd01980 Chlide_reductase_Y Chl 21.4 1.3E+02 0.0028 34.5 5.1 34 111-146 343-376 (416)
336 TIGR01281 DPOR_bchL light-inde 21.1 1.3E+02 0.0029 31.8 4.8 38 16-54 1-38 (268)
337 KOG3339 Predicted glycosyltran 21.0 2.4E+02 0.0053 28.4 6.0 34 15-50 38-71 (211)
338 TIGR01369 CPSaseII_lrg carbamo 20.4 6.9E+02 0.015 32.5 11.7 24 31-54 575-598 (1050)
339 PRK12815 carB carbamoyl phosph 20.3 6.6E+02 0.014 32.7 11.5 24 31-54 576-599 (1068)
340 PF01993 MTD: methylene-5,6,7, 20.3 1.3E+02 0.0029 31.4 4.2 36 111-146 52-94 (276)
341 TIGR02015 BchY chlorophyllide 20.3 1.3E+02 0.0027 34.8 4.6 34 111-146 348-381 (422)
No 1
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.5e-53 Score=448.24 Aligned_cols=254 Identities=31% Similarity=0.500 Sum_probs=209.3
Q ss_pred HHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeE
Q 003222 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVL 562 (838)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i 562 (838)
-..-++..|+..++...++|||||||||||||||||+|||||||.+|++++.+|+|.++++++.+
T Consensus 9 ~~~~f~~~f~~~~~~~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d~~v~l~s~n--------------- 73 (390)
T COG0153 9 LQALFAEHFGYVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSAN--------------- 73 (390)
T ss_pred HHHHHHHHhcccCcceEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccCceEEEEeCC---------------
Confidence 33345567776567789999999999999999999999999999999999999999887766542
Q ss_pred EEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCC
Q 003222 563 QIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPE 642 (838)
Q Consensus 563 ~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~ 642 (838)
. .+....+..+ ++ +.+ .+..+|+||++|++..+ +..|+.+ .|++++|.||||.
T Consensus 74 ------~--~~~~~~~~~~-~d-------~~~---------~~~~~W~nYvkgvi~~l-~~~g~~~-~G~~i~i~gnIP~ 126 (390)
T COG0153 74 ------F--GNAGDIFFLL-LD-------IAK---------EKIDDWANYVKGVIKAL-QKRGYAF-TGLDIVISGNIPI 126 (390)
T ss_pred ------C--ccccceeecc-hh-------hcc---------cccchhhhhHHHHHHHH-HhcCCCc-CCeeEEEecCCCC
Confidence 1 1111111111 11 111 24479999999998875 4889988 6999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC
Q 003222 643 GKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722 (838)
Q Consensus 643 g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~ 722 (838)
|+|||||||++|+++.++..++++++++.+++++||.+||+|+|+|||+|||++++||+++|++++||+++++ +++++|
T Consensus 127 GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l~~-~~~~~p 205 (390)
T COG0153 127 GAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEY-EPVPFP 205 (390)
T ss_pred CCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEcccCce-EEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 899998
Q ss_pred CC-eEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHhcccCCCCCCCCCCCCCCCCCCcccchhHHHHhhhccccccCCC
Q 003222 723 SH-IRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLS 801 (838)
Q Consensus 723 ~~-~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 801 (838)
.. +.|||+||+++|.+++++||.|| ++||++++.|+. .++.|++++
T Consensus 206 ~~~~~ivI~ns~vkr~la~seYn~Rr-------------------------------~ece~A~~~l~~--~~~~L~d~~ 252 (390)
T COG0153 206 VGGVSIVIVNSNVKRELADSEYNERR-------------------------------AECEEAAEFLGV--SIKSLRDVT 252 (390)
T ss_pred ccceEEEEecCCCccccchhHHHHHH-------------------------------HHHHHHHHHHHH--hhhhhhhcC
Confidence 55 99999999999999999996655 455666666655 255677777
Q ss_pred hhhHHHHHhccC
Q 003222 802 PHRFEALYAKNI 813 (838)
Q Consensus 802 ~~~~~~~~~~~~ 813 (838)
+..|++ +.+.|
T Consensus 253 ~~~~~~-~~~~i 263 (390)
T COG0153 253 DEEFAA-LQAEI 263 (390)
T ss_pred HHHHHh-hhhhc
Confidence 777766 44444
No 2
>PLN02865 galactokinase
Probab=100.00 E-value=6.5e-45 Score=405.54 Aligned_cols=244 Identities=21% Similarity=0.296 Sum_probs=198.7
Q ss_pred HHHHHHhccCCCCCc-eEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCC
Q 003222 482 RERKAAAGLFNWEEE-IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560 (838)
Q Consensus 482 ~~~~~~~~~f~~~~~-~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 560 (838)
+-...+...||.+++ ..+++|||||||||||||||||+||||||+++|+++++++++++++++|.
T Consensus 14 ~l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~-------------- 79 (423)
T PLN02865 14 EIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSA-------------- 79 (423)
T ss_pred HHHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEEC--------------
Confidence 345567789997654 26889999999999999999999999999999999999999876655432
Q ss_pred eEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCC
Q 003222 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAV 640 (838)
Q Consensus 561 ~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~i 640 (838)
++ . ..+++++++.. .|..+. .....+..+|+||++|++..+. +.|..+..||++.|.|+|
T Consensus 80 -------~~--~---~~~~~~~~~~~---~~~~~~----~~~~~~~~~W~~Yv~gv~~~l~-~~g~~~~~G~~~~v~g~v 139 (423)
T PLN02865 80 -------QF--E---GEVRFRVDEIQ---HPIANV----SSDSKEESNWGDYARGAVYALQ-SRGHALSQGITGYISGSE 139 (423)
T ss_pred -------CC--C---CceEEeccccc---cccccc----cccCCCCCCHHHHHHHHHHHHH-HcCCCCCCceEEEEECCC
Confidence 11 0 01223332210 011000 0011244789999999999875 677765579999999999
Q ss_pred -CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeee
Q 003222 641 -PEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719 (838)
Q Consensus 641 -P~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v 719 (838)
|.|+|||||||++||++.|++.+++..+++++++++|+++||.++|+|||+|||+++++|..++++++||+++.+ +.+
T Consensus 140 pP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~~-~~v 218 (423)
T PLN02865 140 GLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTLDH-KLV 218 (423)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEccCCCc-cee
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999876 556
Q ss_pred ccC-------CCeEEEEEeCCCCCcCC-CCchhhHHHHHhcChHHHhcc
Q 003222 720 EIP-------SHIRFWGIDSGIRHSVG-GADYGSVRAGAFMGRKMIKST 760 (838)
Q Consensus 720 ~~~-------~~~~~vi~~s~~~~~~~-~~~y~~~r~~~~~g~~~l~~~ 760 (838)
++| .++.|+++||+++|+++ +++||.||++|..+.+.|...
T Consensus 219 pl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~ 267 (423)
T PLN02865 219 SLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARFLLEA 267 (423)
T ss_pred ecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHHHHHh
Confidence 655 46899999999999988 899999999999999888653
No 3
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=4.6e-44 Score=402.23 Aligned_cols=296 Identities=25% Similarity=0.357 Sum_probs=215.2
Q ss_pred HHHHHhccCCCCCc-----eEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCC
Q 003222 483 ERKAAAGLFNWEEE-----IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557 (838)
Q Consensus 483 ~~~~~~~~f~~~~~-----~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~ 557 (838)
-...+...||.+++ .++++|||||||||||||||||+||||||+++|+++++++.+..
T Consensus 18 l~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~----------------- 80 (468)
T PTZ00290 18 LKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFC----------------- 80 (468)
T ss_pred HHHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCC-----------------
Confidence 34457789997653 17889999999999999999999999999999999998874310
Q ss_pred CCCeEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCC----CCCEE
Q 003222 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF----EDSIS 633 (838)
Q Consensus 558 ~~~~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~----~~g~~ 633 (838)
.+.+++.+.. . ..|+++ .... ..+...|+||++|++..++++.|..+ ..||+
T Consensus 81 -~~~i~~~~~~---~---~~~~~~--~~~~---------------~~~~~~W~nYv~gv~~~~l~~~g~~~~~~~~~G~d 136 (468)
T PTZ00290 81 -DHKLRFATET---D---EHFVLD--HLGG---------------AKHNKAWTTFVRGAATLRLNRLGVAIDAPSLQGVC 136 (468)
T ss_pred -CCeEEEEECC---C---ceeecC--cccc---------------cCCcccHHHHHHHHHHHHHHHhCCCcccCCCCCeE
Confidence 1234443211 0 122222 1100 11336899999999987677788742 25999
Q ss_pred EEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC--------------------CCCHHHHHHHHHHHHhhhcCCCCChhh
Q 003222 634 MLVSSAVPEGKGVSSSASVEVASMSAIAAAHGL--------------------NIHPRDLALLCQKVENHIVGAPCGVMD 693 (838)
Q Consensus 634 i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~--------------------~l~~~ela~~a~~~E~~~~G~~~G~mD 693 (838)
+.|.|+||.|+|||||||++||++.|++.+++. +.+..++|++||++||+|+|+|||+||
T Consensus 137 ~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMD 216 (468)
T PTZ00290 137 MVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMD 216 (468)
T ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCcchhh
Confidence 999999999999999999999999999998732 124489999999999999999999999
Q ss_pred HHHhhcCCCCeEEEEEecCCceeeeeccC----CCeEEEEEeCCCCCcCCCC---chhhHHHHHhcChHHHhcccCCCCC
Q 003222 694 QMASACGEANKLLAMVCQPAELLGVVEIP----SHIRFWGIDSGIRHSVGGA---DYGSVRAGAFMGRKMIKSTASGMLP 766 (838)
Q Consensus 694 q~a~~~G~~~~~l~~d~~~~~~~~~v~~~----~~~~~vi~~s~~~~~~~~~---~y~~~r~~~~~g~~~l~~~~~~~~~ 766 (838)
|++|++|++++++++||+++++ ++++++ .++.|||+||+++|+++++ +||.||++|..+.+.|.......+.
T Consensus 217 Q~asa~g~~~~al~iD~~~l~~-~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l~~~~ 295 (468)
T PTZ00290 217 QFISAFAEEDKFMFLDCKSLTF-ESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRYRGKP 295 (468)
T ss_pred HHHHHhCCCCcEEEEecCCCeE-EEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhccccccchh
Confidence 9999999999999999999887 677764 5789999999999999877 9999999888777777533211110
Q ss_pred CCCCCCCCCCCCCc-ccchhHHHHhhhccccccCCChhhHHHHHhccCcccccHHHHHHHh
Q 003222 767 QSLPSSNGLNNIEP-EVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826 (838)
Q Consensus 767 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 826 (838)
.+++.-.. ....| -++....+. -.|+..|++..++. -++.|-|..|..+|++--
T Consensus 296 ~~Lrd~~~-~~~~~~~~~~~~~~~----~~~~~~l~~~~~~R-a~HVitEn~RV~~a~~al 350 (468)
T PTZ00290 296 FTFSDLVR-NPKKYTFDGDVVAFM----ESCKPLMTPGEFER-GTYNIMEQIRTLEFIKLN 350 (468)
T ss_pred hhHHHhhh-ccccccccccHHHHH----HHhhhcCCHHHHHH-HHHHhhHHHHHHHHHHHH
Confidence 00000000 00000 011112221 13566778877776 667788888888887654
No 4
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=1.3e-42 Score=388.51 Aligned_cols=233 Identities=27% Similarity=0.414 Sum_probs=191.7
Q ss_pred HHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEE
Q 003222 484 RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQ 563 (838)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~ 563 (838)
...+...||.++ ..+++|||||||||||+||+||+|||+||+++|++++++++++++++.
T Consensus 7 ~~~f~~~fg~~p-~~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~~~i~i~------------------- 66 (387)
T PRK05322 7 KKKFAEVFGEEA-EDVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLY------------------- 66 (387)
T ss_pred HHHHHHHhCCCC-ceEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCCCEEEEE-------------------
Confidence 334678899654 578899999999999999999999999999999999999988665543
Q ss_pred EEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCC
Q 003222 564 IVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEG 643 (838)
Q Consensus 564 i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g 643 (838)
|.+.+. ...++++++++. ......|.+|++|++..+. +.+.++..||++.|.|+||.|
T Consensus 67 --s~~~~~---~~~~~~~~~~~~----------------~~~~~~w~~y~~gvi~~l~-~~~~~~~~g~~i~i~s~iP~g 124 (387)
T PRK05322 67 --SANFED---LGIIEFDLDDLS----------------FDKEDDWANYPKGVLKFLQ-EAGYKIDHGFDILIYGNIPNG 124 (387)
T ss_pred --ECCCCC---CceEEEeccccC----------------CCCccchHHHHHHHHHHHH-HcCCCCCCCEEEEEecCCCCC
Confidence 321100 001223332210 1123679999999988754 666654479999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC-
Q 003222 644 KGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP- 722 (838)
Q Consensus 644 ~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~- 722 (838)
+|||||||++||++.|++.+++.++++++++++|+.+|+.++|+|||+|||+++++||.++++++||+++++ +.++++
T Consensus 125 sGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~-~~~~~~~ 203 (387)
T PRK05322 125 AGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEY-EYVPLDL 203 (387)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCCCce-EEeccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876 667775
Q ss_pred CCeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHhc
Q 003222 723 SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKS 759 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~~ 759 (838)
.++.|||+|||++|++.+++||.||.+|..+.+.|+.
T Consensus 204 ~~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~ 240 (387)
T PRK05322 204 GDYVIVIMNTNKRRELADSKYNERRAECEKALEELQK 240 (387)
T ss_pred CCeEEEEEECCCccccCcchhhHHHHHHHHHHHHHhh
Confidence 4678999999999999999998888777666666654
No 5
>PLN02521 galactokinase
Probab=100.00 E-value=2.4e-38 Score=360.65 Aligned_cols=232 Identities=25% Similarity=0.359 Sum_probs=188.7
Q ss_pred HHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCC-ccchhhhhhhhccCCCCCCCCCeEE
Q 003222 485 KAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP-SKQRLWKHALARHNDKGQGPMPVLQ 563 (838)
Q Consensus 485 ~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d-~~~~l~~~~~~~~~~~~~~~~~~i~ 563 (838)
..+...||.++ .++++|||||||||||+|||||+||||||+++++++++++++ ++++
T Consensus 37 ~~F~~~fg~~p-~~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~i~--------------------- 94 (497)
T PLN02521 37 AAFVEVYGAKP-DLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLR--------------------- 94 (497)
T ss_pred HHHHHHHCCCC-CEEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCEEE---------------------
Confidence 34678999754 578999999999999999999999999999999999999986 4444
Q ss_pred EEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHH----HHHHHHHHHHhCCCC--CCCEEEEEE
Q 003222 564 IVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYV----AGTILVLMTELGVRF--EDSISMLVS 637 (838)
Q Consensus 564 i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~----~g~i~~~~~~~g~~~--~~g~~i~i~ 637 (838)
+.+.+... ..+.++++... + .......|.||+ +|++..+. +.+..+ ..||++.|.
T Consensus 95 i~s~~~~~----~~~~~~~~~~~----~----------~~~~~~~W~nYv~~~~~gv~~~l~-~~~~~~~~~~g~~i~i~ 155 (497)
T PLN02521 95 IANVNDKY----TTCTFPADPDQ----E----------VDLANHKWGNYFICGYKGVFEFLK-SKGVDVGPPVGLDVVVD 155 (497)
T ss_pred EEECCCCC----CceeeecCccc----c----------cccccccHHHHHHHHHHHHHHHHH-HhccccCCCCCeEEEEe
Confidence 33321100 01112222100 0 011335799999 77777654 555433 249999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceee
Q 003222 638 SAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLG 717 (838)
Q Consensus 638 s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~ 717 (838)
|+||+|+|||||||++||++.|++.+++.++++++++++|+++|+ ++|.+||+|||+++++|++|+++++||+++.+ +
T Consensus 156 s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~-~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~-~ 233 (497)
T PLN02521 156 GTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCER-HIGTQSGGMDQAISIMAQQGVAKLIDFNPVRA-T 233 (497)
T ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhC-ccCCCCChHHHHHHHhcCCCcEEEEecCCCce-E
Confidence 999999999999999999999999999999999999999999999 68999999999999999999999999999876 7
Q ss_pred eeccCCCeEEEEEeCCCCC---cCCCCchhhHHHHHhcChHHHhc
Q 003222 718 VVEIPSHIRFWGIDSGIRH---SVGGADYGSVRAGAFMGRKMIKS 759 (838)
Q Consensus 718 ~v~~~~~~~~vi~~s~~~~---~~~~~~y~~~r~~~~~g~~~l~~ 759 (838)
++++|.++.|||+||+++| .+++++||.||++|..+.+.|..
T Consensus 234 ~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~ 278 (497)
T PLN02521 234 DVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAV 278 (497)
T ss_pred EeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHh
Confidence 8889989999999999555 58889999999999888888854
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=5.3e-38 Score=351.17 Aligned_cols=234 Identities=29% Similarity=0.495 Sum_probs=191.9
Q ss_pred HHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeE
Q 003222 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVL 562 (838)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i 562 (838)
-...+...||.++ .++++|||||||+|||+||+||+||++|||+++++.+++++++.+++.
T Consensus 7 ~~~~f~~~fg~~p-~~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~~~i~v~------------------ 67 (382)
T PRK05101 7 TQSLFAQQFGYPP-THTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVI------------------ 67 (382)
T ss_pred HHHHHHHHhCCCC-CeEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCCCEEEEE------------------
Confidence 4455678899654 578999999999999999999999999999999999999987655443
Q ss_pred EEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCC
Q 003222 563 QIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPE 642 (838)
Q Consensus 563 ~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~ 642 (838)
+...+ . ....++++. ++. ..+..+|.||+++++..+. ..+... .||++.|.|+||+
T Consensus 68 ---s~~~~--~--~~~~~~~~~------~~~---------~~~~~~w~~yv~~~~~~l~-~~~~~~-~g~~i~i~~~iP~ 123 (382)
T PRK05101 68 ---AADYD--N--QQDEFSLDA------PIV---------PHPEQQWANYVRGVVKHLQ-ERNPDF-GGADLVISGNVPQ 123 (382)
T ss_pred ---ECCCC--C--CceEEecCc------ccc---------cCCCCchHHHHHHHHHHHH-HhCCCC-CCeEEEEeCCCCC
Confidence 32110 0 011123222 110 1234689999999998765 444433 6999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC
Q 003222 643 GKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722 (838)
Q Consensus 643 g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~ 722 (838)
|+|||||||++||++.|++.+++.++++.+++++|+++|+.++|.|||+|||+++++||.++++++|+++..+ .++++|
T Consensus 124 gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~~~~-~~~~~~ 202 (382)
T PRK05101 124 GAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLET-KAVPMP 202 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCCCce-EEeeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998776 678888
Q ss_pred CCeEEEEEeCCCCCcCCCCchhhHHHHH-----hcChHHHhcc
Q 003222 723 SHIRFWGIDSGIRHSVGGADYGSVRAGA-----FMGRKMIKST 760 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~~~~~~y~~~r~~~-----~~g~~~l~~~ 760 (838)
.++.|+|+|||++|++.++.|+.||++| .+|.+.|+++
T Consensus 203 ~~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~ 245 (382)
T PRK05101 203 EGVAVVIINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDV 245 (382)
T ss_pred CCcEEEEEeCCCCccccccchhHHHHHHHHHHHHhChHhhhcC
Confidence 8899999999999999999999999544 4565555554
No 7
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=2e-38 Score=351.93 Aligned_cols=214 Identities=28% Similarity=0.393 Sum_probs=179.5
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
++++|||||||||||+|||||+|+|+||++++++++++++++++++. |...+ ..
T Consensus 3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~~~i~i~---------------------s~~~~-----~~ 56 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITAS---------------------SDRAD-----GS 56 (363)
T ss_pred EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCCCEEEEE---------------------ECCCC-----Cc
Confidence 56799999999999999999999999999999999999998765543 32110 01
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
++++++.. ......|.+|++|++..+. +.|..+ .|+++.|.|+||+|+|||||||++||++
T Consensus 57 ~~~~~~~~-----------------~~~~~~w~~y~~gv~~~l~-~~g~~~-~g~~i~i~s~iP~g~GLgSSAA~~va~~ 117 (363)
T PRK00555 57 ARIPLDTT-----------------PGQVTGWAAYAAGVIWALR-GAGHPV-PGGAMSITSDVEIGSGLSSSAALECAVL 117 (363)
T ss_pred eEEecCCC-----------------CCCCcchHHHHHHHHHHHH-HcCCCC-CCeEEEEecCCCCCCCccHHHHHHHHHH
Confidence 22332210 1123689999999988754 667665 6999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCC---CeEEEEEeCCC
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPS---HIRFWGIDSGI 734 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~---~~~~vi~~s~~ 734 (838)
.|++.++|.++++.+++++|+++|+.++|.|||+|||+++++||.|+++++||++..+ .+++++. .+.|+++||++
T Consensus 118 ~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~d~~~~~~-~~v~~~~~~~~~~lvv~~s~~ 196 (363)
T PRK00555 118 GAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLIDFRDLTV-RPVAFDPDAAGVVLLLMDSRA 196 (363)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEEEcCCCcE-EEeccCCCcCceEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999988665 6777753 36799999999
Q ss_pred CCcCCCCchhhHHHHHhcChHHH
Q 003222 735 RHSVGGADYGSVRAGAFMGRKMI 757 (838)
Q Consensus 735 ~~~~~~~~y~~~r~~~~~g~~~l 757 (838)
+|.+++++||.||.++....+.+
T Consensus 197 ~~~~~~~~y~~rr~~~~~~~~~~ 219 (363)
T PRK00555 197 RHRHAGGEYAARRASCERAAADL 219 (363)
T ss_pred cccccchhhHHHHHHHHHHHHHh
Confidence 99999999999998776554433
No 8
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=1.4e-37 Score=349.55 Aligned_cols=232 Identities=26% Similarity=0.419 Sum_probs=191.6
Q ss_pred HHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEE
Q 003222 485 KAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQI 564 (838)
Q Consensus 485 ~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i 564 (838)
..+...||.++ .++++|||||+|+|||+||+||+||++||++++++.+++++++++++
T Consensus 6 ~~f~~~fg~~p-~~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~~~i~i--------------------- 63 (386)
T TIGR00131 6 KIFASAFGAKP-DFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRI--------------------- 63 (386)
T ss_pred HHHHHHHCCCC-CEEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCCCeEEE---------------------
Confidence 45667889754 57899999999999999999999999999999999999998765443
Q ss_pred EecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCC
Q 003222 565 VSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGK 644 (838)
Q Consensus 565 ~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~ 644 (838)
.+.+.+ .....+++++. .. ......|.+|+++++..+++ .+.....||++.|.|+||+|+
T Consensus 64 ~~~~~~--~~~~~~~~~~~--------~~---------~~~~~~w~~y~~~~~~~~~~-~~~~~~~g~~i~i~s~iP~gs 123 (386)
T TIGR00131 64 YLANAD--NKFAERSLDLP--------LD---------GSEVSDWANYFKGVLHVAQE-RFNSFPLGADIVCSGNVPTGS 123 (386)
T ss_pred EECCCC--CcceEEECCCC--------CC---------CCCCCCcHhHHHHHHHHHHH-hcCCCCCceEEEEECCCCCCC
Confidence 332110 00001222211 10 11236899999999988764 444334699999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCC-
Q 003222 645 GVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPS- 723 (838)
Q Consensus 645 GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~- 723 (838)
|||||||++||++.|++.+++.++++++++++|+.+|+.++|.|||+|||+++++||.+++++++|++.++ .++++|.
T Consensus 124 GLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~~~~-~~~~~~~~ 202 (386)
T TIGR00131 124 GLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECRSLKA-TPFKFPQL 202 (386)
T ss_pred CcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcCCCce-eeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766 6788886
Q ss_pred CeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHhc
Q 003222 724 HIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKS 759 (838)
Q Consensus 724 ~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~~ 759 (838)
++.|+|+|||++|++.++.|+.||++|..+.+.|..
T Consensus 203 ~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~ 238 (386)
T TIGR00131 203 GIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAA 238 (386)
T ss_pred CeEEEEEeCCCccccccchhHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999888777776643
No 9
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=100.00 E-value=4.5e-32 Score=298.04 Aligned_cols=311 Identities=27% Similarity=0.445 Sum_probs=214.0
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccCCCceeeeeeccCCCcccccccccChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 94 (838)
|||+|+++|+|+||++||++||++| +||+|+|++..... ++... +.+... .+++..... ...+..+++..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 71 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-----FPVREI-PGLGPIQEN-GRLDRWKTVRN 71 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-----cCEEEc-cCceEeccC-CccchHHHHHH
Confidence 6899999999999999999999999 59999999887532 11111 112221 222322221 24455555555
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHH-HHh
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQ-IAE 173 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~-l~~ 173 (838)
...+.. .+...+.++.+++++++||+||+|+++.+..+|+..|||++.+++..|...+....... ..+.....+ ...
T Consensus 72 ~~~~~~-~~~~~~~~~~~~l~~~~pDlVIsD~~~~~~~aa~~~giP~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 149 (318)
T PF13528_consen 72 NIRWLA-RLARRIRREIRWLREFRPDLVISDFYPLAALAARRAGIPVIVISNQYWFLHPNFWLPWD-QDFGRLIERYIDR 149 (318)
T ss_pred HHHhhH-HHHHHHHHHHHHHHhcCCCEEEEcChHHHHHHHHhcCCCEEEEEehHHcccccCCcchh-hhHHHHHHHhhhh
Confidence 443321 34456677788999999999999999999999999999999999877653211111100 111122222 222
Q ss_pred h-ccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCC-CCcEEE
Q 003222 174 D-YSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLP-SGWKCL 251 (838)
Q Consensus 174 ~-y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~-~~~~~v 251 (838)
. +..++..+..++..+.+...++..+|++.++ +.++.. +.+.+.|++++|+.+.+ ++.+.+.. +++.++
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~--~~~~~~iLv~~gg~~~~-~~~~~l~~~~~~~~~ 220 (318)
T PF13528_consen 150 YHFPPADRRLALSFYPPLPPFFRVPFVGPIIRP------EIRELP--PEDEPKILVYFGGGGPG-DLIEALKALPDYQFI 220 (318)
T ss_pred ccCCcccceecCCccccccccccccccCchhcc------cccccC--CCCCCEEEEEeCCCcHH-HHHHHHHhCCCCeEE
Confidence 2 4445555544444222222233344544332 111111 23567899999998876 55554433 457777
Q ss_pred EeCCCCC-CCCCCeEECCCC-CCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 003222 252 VCGASDS-QLPPNFIKLPKD-AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (838)
Q Consensus 252 v~G~~~~-~lp~nv~~~~~~-~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l 329 (838)
++|.... ..++|+++.+|. .+++++|+.||++||++|++|++|++++|+|+|++|++.+.||..||+++++.|+|+.+
T Consensus 221 v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~ 300 (318)
T PF13528_consen 221 VFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL 300 (318)
T ss_pred EEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc
Confidence 7787652 257899999987 77889999999999999999999999999999999988789999999999999999999
Q ss_pred ecCCCChhhHHHHHHHH
Q 003222 330 IRRDLLTGHWKPYLERA 346 (838)
Q Consensus 330 ~~~~~~~~~l~~~l~~l 346 (838)
+.++++++.++++|+++
T Consensus 301 ~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 301 SQEDLTPERLAEFLERL 317 (318)
T ss_pred ccccCCHHHHHHHHhcC
Confidence 99999989998888764
No 10
>PRK03817 galactokinase; Provisional
Probab=99.97 E-value=5.4e-31 Score=292.94 Aligned_cols=210 Identities=30% Similarity=0.504 Sum_probs=174.6
Q ss_pred EEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
.++|||||+|+|||+||+||+||++||++++++.+++++ . +.|.+.+.+ ..+
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~~--~---------------------~~i~~~~~~-----~~~ 53 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKSE--K---------------------FIFYSENFN-----EEK 53 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeCC--e---------------------EEEEECCCC-----CcE
Confidence 478999999999999999999999999999999998752 2 233332110 012
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHH
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~ 658 (838)
+++++++ ....+|.+|+++++..+. +.+... .||++.+.|+||.|+|||||||++||++.
T Consensus 54 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~i~s~iP~~~GLgSSaa~~va~~~ 113 (351)
T PRK03817 54 TFELDKL------------------EKLNSWADYIKGVIWVLE-KRGYEV-GGVKGKVSSNLPIGAGLSSSASLEVAVAY 113 (351)
T ss_pred EEeCCcc------------------CCCCchHHHHHHHHHHHH-HcCCCC-CCeEEEEeCCCCCCCCcCcHHHHHHHHHH
Confidence 2232221 123689999999987654 566654 69999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 659 al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
|++.++|.++++.+++++|+++|+.++|.+||+|||+++++|+.++++++++++..+ .++++|.++.|++++||.+|++
T Consensus 114 al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~vv~~sg~~~~~ 192 (351)
T PRK03817 114 ALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMTLEY-EYVPFPEDYEILVFDTGVKREL 192 (351)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEEecCCCce-EEEecCCCcEEEEEeCCCcccc
Confidence 999999999999999999999999999999999999999999999999999988655 5778888999999999999998
Q ss_pred CCCchhhHHHHHhcChHHH
Q 003222 739 GGADYGSVRAGAFMGRKMI 757 (838)
Q Consensus 739 ~~~~y~~~r~~~~~g~~~l 757 (838)
.+.+|+.||..+....+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~l 211 (351)
T PRK03817 193 ASSEYNERRQECEEALKIL 211 (351)
T ss_pred ccchhHHHHHHHHHHHHHh
Confidence 8889999987766655554
No 11
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.97 E-value=1.6e-28 Score=284.02 Aligned_cols=371 Identities=12% Similarity=0.068 Sum_probs=230.8
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcc----cc-cccc-----
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAV----QA-DALT----- 85 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~----~~-~~~~----- 85 (838)
.+||.+++..|.+|..-+..++++|++|||+||++++.+....... ....++........... .. ....
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASH-LCGNITEIDASLSVEYFKKLVKSSAVFRKRGVV 99 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccC-CCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhh
Confidence 5687777888999999999999999999999999977532211110 11122211110000000 00 0000
Q ss_pred cChHHHHHHHHHHhhccHHHHHH--HHHHHHh--cCCCcEEEECC-CchHHHHHHHh-CCcEEEEecCc---hh-HHHH-
Q 003222 86 VDRLASLEKYSETAVAPRKSILK--DEVEWLN--SIKADLVVSDV-VPVACRAAADA-GIRSVCVTNFS---WD-FIYA- 154 (838)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~l~--~~~~~L~--~~kPDlVVsD~-~~~~~~aA~~l-gIP~V~is~~~---~~-~i~~- 154 (838)
.+...............+...+. +..++|+ +.++|+||+|. ..|++.+|+.+ ++|.|.++... |. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~gg 179 (507)
T PHA03392 100 ADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMGA 179 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhcc
Confidence 00000000000110111222232 2367787 78899999995 77888889999 99988875422 11 0000
Q ss_pred -----hhhhhcccc-------hHHHH-------------------HHHHhhc-cc-----------cceEE-ecCC--CC
Q 003222 155 -----EYVMAAGHH-------HRSIV-------------------WQIAEDY-SH-----------CEFLI-RLPG--YC 188 (838)
Q Consensus 155 -----~~~~~~~~~-------~~~i~-------------------~~l~~~y-~~-----------~d~ll-~~~~--~~ 188 (838)
.|+|..... .+++. +++.+.+ .. .+.++ ...+ ..
T Consensus 180 ~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~d~ 259 (507)
T PHA03392 180 VSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFDN 259 (507)
T ss_pred CCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCccccC
Confidence 111110000 01110 0111111 11 01111 1111 22
Q ss_pred CCCCCCceeecCcccc---cCCcChHHHHHHhCCCCCCcEEEEEcCCCCc----hhh----hHHhhCCCCcEEEEe-CC-
Q 003222 189 PMPAFRDVIDVPLVVR---RLHKSRKEVRKELGIEDDVKLLILNFGGQPA----GWK----LKEEYLPSGWKCLVC-GA- 255 (838)
Q Consensus 189 ~~p~~~~v~~ip~~~~---~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~----~~~----ll~~l~~~~~~~vv~-G~- 255 (838)
+.|..++++.+|++.. ..++.++++.++++.. ++++||+||||... +.+ +++++...+..+++. +.
T Consensus 260 ~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~ 338 (507)
T PHA03392 260 NRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE 338 (507)
T ss_pred CCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4455567888888644 2245678898888754 45799999999753 222 333443334555443 32
Q ss_pred CCC-CCCCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEe
Q 003222 256 SDS-QLPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMI 330 (838)
Q Consensus 256 ~~~-~lp~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~ 330 (838)
..+ .+|+||.+. +|+| ++|++ +++||||||+||++||+++|||+|++| .+.||+.||++++++|+|+.++
T Consensus 339 ~~~~~~p~Nv~i~---~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP--~~~DQ~~Na~rv~~~G~G~~l~ 413 (507)
T PHA03392 339 VEAINLPANVLTQ---KWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLP--MMGDQFYNTNKYVELGIGRALD 413 (507)
T ss_pred cCcccCCCceEEe---cCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECC--CCccHHHHHHHHHHcCcEEEec
Confidence 233 578999985 5677 89965 999999999999999999999999999 7899999999999999999999
Q ss_pred cCCCChhhHHHHHHHHhhCCCCcc-----------CCCCHHHHHHHHHHHHhccCCCccCCCc-hhHhhHHHHHhccccc
Q 003222 331 RRDLLTGHWKPYLERAISLKPCYE-----------GGINGGEVAAHILQETAIGKNYASDKLS-GARRLRDAIIFGYELQ 398 (838)
Q Consensus 331 ~~~~~~~~l~~~l~~ll~~~~~~~-----------~~~~g~~~~a~~i~~~~~~~~~~~~r~~-ga~~Lr~a~~~~~~~q 398 (838)
..+++++.+.++|+++++++ .|+ .++..+.+.|.+|.|+ +.||+ |+.|||
T Consensus 414 ~~~~t~~~l~~ai~~vl~~~-~y~~~a~~ls~~~~~~p~~~~~~av~~iE~-------v~r~~~g~~~lr---------- 475 (507)
T PHA03392 414 TVTVSAAQLVLAIVDVIENP-KYRKNLKELRHLIRHQPMTPLHKAIWYTEH-------VIRNKHGNTSLK---------- 475 (507)
T ss_pred cCCcCHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHhCCCCccccc----------
Confidence 99999999999999999876 332 4555444445566666 56888 999999
Q ss_pred cCCCccccccccccccc
Q 003222 399 RVPGRDVSIPEWYQTAE 415 (838)
Q Consensus 399 ~~~~~~~~~p~~~~~~~ 415 (838)
+++.+++ |++|+.
T Consensus 476 -~~~~~l~---~~qy~~ 488 (507)
T PHA03392 476 -TKAANVS---YSDYFM 488 (507)
T ss_pred -ccccCCC---HHHHHH
Confidence 9999999 888886
No 12
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.95 E-value=1.1e-27 Score=257.86 Aligned_cols=180 Identities=26% Similarity=0.313 Sum_probs=142.7
Q ss_pred ccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCceecc
Q 003222 502 APGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMD 581 (838)
Q Consensus 502 APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~ 581 (838)
|||||+|+|||+||+||+||++||++++++.+.+++++ + .|.+.. ++.+
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~~-~---------------------~i~~~~---------~~~~ 49 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDG-S---------------------FIESDL---------GRGS 49 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCCC-c---------------------eEeccc---------cCCc
Confidence 79999999999999999999999999999999987653 2 222210 1011
Q ss_pred CCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 003222 582 LSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIA 661 (838)
Q Consensus 582 l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~ 661 (838)
+... ......|.+|+++++..+. ..+ ..++++.+.|+||.|+|||||||+++|++.|++
T Consensus 50 ~~~~-----------------~~~~~~~~~~v~~~l~~~~-~~~---~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~ 108 (273)
T TIGR00549 50 LDDA-----------------PQELDGLVSYIAEALSYFS-ELN---PPPLEIEIDSEIPPGRGLGSSAAVAVALIRALA 108 (273)
T ss_pred HhHh-----------------hHHHHHHHHHHHHHHHHhh-ccC---CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHH
Confidence 1100 0123579999999988664 222 135999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 662 AAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 662 ~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
.+++.++++.+++++|+.+|+.++|.+|| +||+++++||. ++++++... ..+..+.+..+++++|++++++.
T Consensus 109 ~~~~~~~~~~~l~~~a~~~E~~~~G~~sG-~D~~~~~~Gg~---~~~~~~~~~--~~~~~~~~~~lvl~~tg~~~~T~ 180 (273)
T TIGR00549 109 DYFGSELSKEELAKLANEAEKIAHGKPSG-IDTATSTYGGP---VYFEKGEGE--FTKLISLDGYFVIADTGVSGSTK 180 (273)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCCCCch-HhHHHHhcCCe---EEEEcCCCc--eeeccCCCeEEEEEECCCCCcHH
Confidence 99999999999999999999999999999 59999999984 566655432 23334456889999999998763
No 13
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.95 E-value=2.2e-29 Score=294.14 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=112.0
Q ss_pred CceeecCcccc-cCCcChHHHHHHhCCCCCCcEEEEEcCCCCc--hhh----hHHhhCCCCcEEEEe-CCCC-CCCCCCe
Q 003222 194 RDVIDVPLVVR-RLHKSRKEVRKELGIEDDVKLLILNFGGQPA--GWK----LKEEYLPSGWKCLVC-GASD-SQLPPNF 264 (838)
Q Consensus 194 ~~v~~ip~~~~-~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~----ll~~l~~~~~~~vv~-G~~~-~~lp~nv 264 (838)
+++..+|++.. ++++.+++++++++.+.++++|||||||... +.+ +.+.+...+..+++. .... ..+|+|+
T Consensus 246 p~v~~vGgl~~~~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~ 325 (500)
T PF00201_consen 246 PNVVEVGGLHIKPAKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLPKNV 325 (500)
T ss_dssp CTSTTGCGC-S----TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHHTTE
T ss_pred hcccccCccccccccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccccccccceE
Confidence 45666777533 4667888999998864578999999999864 222 333443433455543 3322 2378999
Q ss_pred EECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 003222 265 IKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (838)
Q Consensus 265 ~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~ 340 (838)
++. +|+| ++|+| +++||||||+||++||+++|||||++| .++||+.||+++++.|+|+.++..+++.+.+.
T Consensus 326 ~~~---~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P--~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~ 400 (500)
T PF00201_consen 326 LIV---KWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIP--LFGDQPRNAARVEEKGVGVVLDKNDLTEEELR 400 (500)
T ss_dssp EEE---SS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-G--CSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHH
T ss_pred EEe---ccccchhhhhcccceeeeeccccchhhhhhhccCCccCCC--CcccCCccceEEEEEeeEEEEEecCCcHHHHH
Confidence 874 6888 89975 899999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC----------ccCCCCHHHHHHHHHHHHhccCCCccCCCchhHhhHHHHHhccccccCCCcccccccc
Q 003222 341 PYLERAISLKPC----------YEGGINGGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEW 410 (838)
Q Consensus 341 ~~l~~ll~~~~~----------~~~~~~g~~~~a~~i~~~~~~~~~~~~r~~ga~~Lr~a~~~~~~~q~~~~~~~~~p~~ 410 (838)
++|+++++++.. +++++..+.+.|.+|.|+ +.||+|++||| +++.+++ |
T Consensus 401 ~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~-------v~~~~~~~~l~-----------~~~~~l~---~ 459 (500)
T PF00201_consen 401 AAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEY-------VARHGGAPHLR-----------SPARDLS---F 459 (500)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHTTT--------------------------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------HHhcCCCcccC-----------ChhhcCC---H
Confidence 999999988731 226888999999999999 78999999999 9999999 9
Q ss_pred ccccc
Q 003222 411 YQTAE 415 (838)
Q Consensus 411 ~~~~~ 415 (838)
|||+.
T Consensus 460 ~~~~~ 464 (500)
T PF00201_consen 460 YQYYL 464 (500)
T ss_dssp -----
T ss_pred HHHHH
Confidence 99987
No 14
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.5e-25 Score=249.20 Aligned_cols=325 Identities=14% Similarity=0.150 Sum_probs=204.4
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHH
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASL 92 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l 92 (838)
|+++.| +.|...||+.|+++||++|+++||+|+|++.... +....+...++.+.... ..++. ....+
T Consensus 1 ~~~i~~---~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~-~e~~l~~~~g~~~~~~~-~~~l~--------~~~~~ 67 (352)
T PRK12446 1 MKKIVF---TGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQG-IEKTIIEKENIPYYSIS-SGKLR--------RYFDL 67 (352)
T ss_pred CCeEEE---EcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCc-cccccCcccCCcEEEEe-ccCcC--------CCchH
Confidence 555333 5566689999999999999999999999986542 22222221122222211 01110 00011
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCc---hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHH
Q 003222 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~---~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
..+...+. ......+...++++++||+||+...+ .++++|+.+++|++.+.+.... .. ..
T Consensus 68 ~~~~~~~~--~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~----g~-----------~n 130 (352)
T PRK12446 68 KNIKDPFL--VMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP----GL-----------AN 130 (352)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc----cH-----------HH
Confidence 11211110 11123345678999999999987533 3578899999999988543311 00 01
Q ss_pred HHHhhccccceEE-ecCCCC-CCC-CCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhHHhh-
Q 003222 170 QIAEDYSHCEFLI-RLPGYC-PMP-AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKEEY- 243 (838)
Q Consensus 170 ~l~~~y~~~d~ll-~~~~~~-~~p-~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll~~l- 243 (838)
++...+. ++++ .++... ..+ ....++++|+........+++.++.+++++++++|++++||++.. .++....
T Consensus 131 r~~~~~a--~~v~~~f~~~~~~~~~~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l 208 (352)
T PRK12446 131 KIALRFA--SKIFVTFEEAAKHLPKEKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREAL 208 (352)
T ss_pred HHHHHhh--CEEEEEccchhhhCCCCCeEEECCcCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHH
Confidence 1111111 1111 121110 011 112344555433222233456677788888899999999999985 2332221
Q ss_pred --CCCCcEE-EEeCCCCCC--C--CCCeEECCCC-CCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCC---CC
Q 003222 244 --LPSGWKC-LVCGASDSQ--L--PPNFIKLPKD-AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF---NE 312 (838)
Q Consensus 244 --~~~~~~~-vv~G~~~~~--l--p~nv~~~~~~-~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~---~E 312 (838)
+..++.+ .++|++..+ + -.++.+++|. ++|+++|++||++|||+|.+|++|++++|+|+|++|.+.. .+
T Consensus 209 ~~l~~~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~ 288 (352)
T PRK12446 209 PELLLKYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGD 288 (352)
T ss_pred HhhccCcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCch
Confidence 1234544 467875311 1 1356677887 6899999999999999999999999999999999997532 47
Q ss_pred hHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc------CCCCHHHHHHHHHHH
Q 003222 313 EPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------GGINGGEVAAHILQE 369 (838)
Q Consensus 313 Q~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~------~~~~g~~~~a~~i~~ 369 (838)
|..||+++++.|++..+...+++++.+.+.|.++++++..+. ..+++++++++.+.+
T Consensus 289 Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 289 QILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKTALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred HHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 999999999999999999889999999999999987653332 456777766666543
No 15
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.94 E-value=4.3e-26 Score=258.84 Aligned_cols=325 Identities=18% Similarity=0.128 Sum_probs=191.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccc-----cChHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-----VDRLA 90 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~ 90 (838)
|+|+|+.. ++.||+.|+++||++|+++||+|+|++... +...+...++.+.+...+.......... .....
T Consensus 1 mrIl~~~~-p~~GHv~P~l~la~~L~~rGh~V~~~t~~~---~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (401)
T cd03784 1 MRVLITTI-GSRGDVQPLVALAWALRAAGHEVRVATPPE---FADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPG 76 (401)
T ss_pred CeEEEEeC-CCcchHHHHHHHHHHHHHCCCeEEEeeCHh---HHHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchH
Confidence 46766654 479999999999999999999999998853 1122222233443322111111000000 00001
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchhHHH----------H-hhh-
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWDFIY----------A-EYV- 157 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~~i~----------~-~~~- 157 (838)
........+.......+.+..+.+++++||+||+|. .+++..+|+.+|||++.+....|.... . .+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (401)
T cd03784 77 LLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLYAL 156 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCccchHHHHHHHH
Confidence 111111112223344555566677789999999995 777888999999999988543321000 0 000
Q ss_pred hhcc---cchHHHHHHHHhhccc---------cce-EEecCCCC--CCCCCCc-eeec--Cccccc-CCcChHHHHHHhC
Q 003222 158 MAAG---HHHRSIVWQIAEDYSH---------CEF-LIRLPGYC--PMPAFRD-VIDV--PLVVRR-LHKSRKEVRKELG 218 (838)
Q Consensus 158 ~~~~---~~~~~i~~~l~~~y~~---------~d~-ll~~~~~~--~~p~~~~-v~~i--p~~~~~-~~~~~~~~r~~l~ 218 (838)
.... .............+.. .+. +...++.. ..+..+. ...+ +..... ....+.++..++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (401)
T cd03784 157 LEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLA 236 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCCCCCCCHHHHHHHh
Confidence 0000 0000111111111211 011 11111111 1111111 1111 111111 1122345556654
Q ss_pred CCCCCcEEEEEcCCCCch--hhh----HHhhCCCCcEEE-EeCCCCC---CCCCCeEECCCCCCHHHHHhhcCEEEecCC
Q 003222 219 IEDDVKLLILNFGGQPAG--WKL----KEEYLPSGWKCL-VCGASDS---QLPPNFIKLPKDAYTPDFMAASDCMLGKIG 288 (838)
Q Consensus 219 ~~~~~~~Vlvs~Gs~~~~--~~l----l~~l~~~~~~~v-v~G~~~~---~lp~nv~~~~~~~~~pdlLa~adl~It~gG 288 (838)
+++++|||++||.... ..+ ++.+...++.++ .+|.... .+++||++.+|++ +.++|++||+||||||
T Consensus 237 --~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~~~~~~~v~~~~~~p-~~~ll~~~d~~I~hgG 313 (401)
T cd03784 237 --AGRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVP-HDWLLPRCAAVVHHGG 313 (401)
T ss_pred --CCCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccccCCCCceEEeCCCC-HHHHhhhhheeeecCC
Confidence 4678999999998652 222 233333455444 4565432 3688999988764 4589999999999999
Q ss_pred hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 289 YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 289 ~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
+||++|++++|+|+|++| .+.||+.||+++++.|+|+.+...+++++.+.++|++++++
T Consensus 314 ~~t~~eal~~GvP~v~~P--~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 314 AGTTAAALRAGVPQLVVP--FFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred chhHHHHHHcCCCEEeeC--CCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 999999999999999999 56899999999999999999988778889999999999864
No 16
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=6.5e-27 Score=254.01 Aligned_cols=236 Identities=27% Similarity=0.380 Sum_probs=179.6
Q ss_pred HHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEE
Q 003222 486 AAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIV 565 (838)
Q Consensus 486 ~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~ 565 (838)
++...|+. .+..+++|||||||+|||+||+|+.|+|||||..+.+++.+++|+.++ +++.
T Consensus 29 ~~~~~~~~-kp~~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~~d~~~s-------------------l~~t 88 (489)
T KOG0631|consen 29 AFQAAYGA-KPVFVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVS-------------------LRLT 88 (489)
T ss_pred HHHHhhCC-CceEEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEcCCCcee-------------------EEEe
Confidence 45568895 567899999999999999999999999999999999999999987533 4444
Q ss_pred ecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHH----HHHHHHHHHHhCCCCCC--CEEEEEEeC
Q 003222 566 SYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYV----AGTILVLMTELGVRFED--SISMLVSSA 639 (838)
Q Consensus 566 s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~----~g~i~~~~~~~g~~~~~--g~~i~i~s~ 639 (838)
++++++. .+++++... . ... .....+|.||+ +|+...+ +..+..... |+.+...++
T Consensus 89 N~~~~f~----~~~~~~p~~-~----~~I--------~~~~~~w~ny~~C~~~g~h~~~-~~~~~~~~~~vGl~~l~~g~ 150 (489)
T KOG0631|consen 89 NFNPDFI----YFKYPLPSI-V----WQI--------DPDVSKWENYFYCGMKGFHEYI-KRKPVRFEPPVGLSILNDGS 150 (489)
T ss_pred cCCCccc----eeeccCCch-h----ccc--------CCCccchhhhhccchHHHHHHH-hccccccCCCcceEEEecCC
Confidence 4444432 233333220 0 000 12347999999 4443332 223443334 999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEe--cCCc
Q 003222 640 VPEGKGVSSSASVEVASMSAIAAAH-GLN--IHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVC--QPAE 714 (838)
Q Consensus 640 iP~g~GLgSSAA~~va~~~al~~l~-~~~--l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~--~~~~ 714 (838)
+|.|+|||||||+.++.+.|...+. |.+ +++.+++.++..+| .++|.++|.|||+++++|.+++++++++ .|..
T Consensus 151 vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae-~~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf~ 229 (489)
T KOG0631|consen 151 VPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAE-SYIGLNSGGMDQAASVLAEKGHALLVDPYFTPFR 229 (489)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEee-cccCcCCCcHHHHHHHHHhcCceEEecccCCccc
Confidence 9999999999999999999999988 776 88999999999888 5689999999999999999999999993 3665
Q ss_pred eeeeeccCCCeEEEEEeCCCCCc---CCCCchhhHH-----HHHhcChHHHhccc
Q 003222 715 LLGVVEIPSHIRFWGIDSGIRHS---VGGADYGSVR-----AGAFMGRKMIKSTA 761 (838)
Q Consensus 715 ~~~~v~~~~~~~~vi~~s~~~~~---~~~~~y~~~r-----~~~~~g~~~l~~~~ 761 (838)
. ..+++++.-+|+|.+|-+... .+.+.||.|. ++++++.+.+.+..
T Consensus 230 ~-~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~ 283 (489)
T KOG0631|consen 230 R-SMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELP 283 (489)
T ss_pred c-ccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccH
Confidence 4 577778777999999888774 4567898884 45566666555554
No 17
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.94 E-value=4.6e-25 Score=242.96 Aligned_cols=307 Identities=17% Similarity=0.145 Sum_probs=184.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC-cccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD-FVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~-~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
+|+|+++|+|+||++|+++||++|++ ||+|+|++.... .++.... .+.+...+ +.. +...++ ..+..+++...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~-~~~~~~~p-~~~--~~~~~~-~~~~~~~l~~~ 74 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYG-FKVFETFP-GIK--LKGEDG-KVNIVKTLRNK 74 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhc-CcceeccC-Cce--EeecCC-cCcHHHHHHhh
Confidence 47889999999999999999999999 999999876541 1111110 01111111 001 111111 13344443322
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhc
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDY 175 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y 175 (838)
..+ ....+.++.+++++++||+||+|+.+.+.++|+.++||++.+.+ .+...+.... ....+....+...+
T Consensus 75 ~~~----~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~~-q~~~~~~~~~----~~~~~~~~~~~~~~ 145 (321)
T TIGR00661 75 EYS----PKKAIRREINIIREYNPDLIISDFEYSTVVAAKLLKIPVICISN-QNYTRYPLKT----DLIVYPTMAALRIF 145 (321)
T ss_pred ccc----cHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEec-chhhcCCccc----chhHHHHHHHHHHh
Confidence 121 11345667889999999999999999999999999999998876 2211111000 00111112222222
Q ss_pred -cccceEEecCCCCCCCCCCceeecCcccc-cC-CcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCC-CCcEEE
Q 003222 176 -SHCEFLIRLPGYCPMPAFRDVIDVPLVVR-RL-HKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLP-SGWKCL 251 (838)
Q Consensus 176 -~~~d~ll~~~~~~~~p~~~~v~~ip~~~~-~~-~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~-~~~~~v 251 (838)
..++.+....+..+.+.. |.... .+ +..+.+..+.. +.+.+.|++++|+.+.. .+++.+.. +.+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~--~~~~~~iLv~~g~~~~~-~l~~~l~~~~~~~~i 216 (321)
T TIGR00661 146 NERCERFIVPDYPFPYTIC------PKIIKNMEGPLIRYDVDDVD--NYGEDYILVYIGFEYRY-KILELLGKIANVKFV 216 (321)
T ss_pred ccccceEeeecCCCCCCCC------ccccccCCCcccchhhhccc--cCCCCcEEEECCcCCHH-HHHHHHHhCCCeEEE
Confidence 223333222111111111 11111 11 11112222211 23457788998886653 44555432 344444
Q ss_pred EeCCCC--CCCCCCeEECCCCC-CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE
Q 003222 252 VCGASD--SQLPPNFIKLPKDA-YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE 328 (838)
Q Consensus 252 v~G~~~--~~lp~nv~~~~~~~-~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~ 328 (838)
+.+... ..+++|+.+.+|.. +++++|+.||++|||+|++|++|++++|+|+|++|.+.+.||..||+.+++.|+|+.
T Consensus 217 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~ 296 (321)
T TIGR00661 217 CYSYEVAKNSYNENVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIA 296 (321)
T ss_pred EeCCCCCccccCCCEEEEECChHHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEE
Confidence 333221 12678999888874 788999999999999999999999999999999998777799999999999999999
Q ss_pred EecCCCChhhHHHHHHHHhhCC
Q 003222 329 MIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 329 l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++..++ .+.+.+.++++++
T Consensus 297 l~~~~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 297 LEYKEL---RLLEAILDIRNMK 315 (321)
T ss_pred cChhhH---HHHHHHHhccccc
Confidence 987775 3334554555444
No 18
>PLN02677 mevalonate kinase
Probab=99.94 E-value=4.5e-26 Score=252.54 Aligned_cols=206 Identities=22% Similarity=0.321 Sum_probs=136.3
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCC----ccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP----SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d----~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
+.++|||||+|+|||+||+|++++++||+++||+.+++++. +.+.+. +|++.+.
T Consensus 3 i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~--------------~~di~~~-------- 60 (387)
T PLN02677 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQ--------------LKDLGLE-------- 60 (387)
T ss_pred eEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEE--------------cCCCCce--------
Confidence 47899999999999999999999999999999999998642 222211 3333321
Q ss_pred CCCceeccCCcccc---------CCCCcchh-----hhhcccCC--CCC-CChh-HHHHHHHHHHHHHhCCCCCCCEEEE
Q 003222 574 RGPTFDMDLSDFMD---------EGKPMSYE-----KAKKYFDT--NPS-QKWA-AYVAGTILVLMTELGVRFEDSISML 635 (838)
Q Consensus 574 ~~~~~~~~l~~~~~---------~~~p~~~~-----~~~~~~~~--~~~-~~w~-~y~~g~i~~~~~~~g~~~~~g~~i~ 635 (838)
++++++++.. ...+..+. ...++... .++ ..|. +.+.+.+.-++.-. .. .++++.
T Consensus 61 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~--~~-~~~~i~ 133 (387)
T PLN02677 61 ----FSWPLARIKEALPDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSIL--GF-NPATVV 133 (387)
T ss_pred ----EEechHhhhhhhccccccccccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhc--cC-CCeEEE
Confidence 2233222110 00111110 00111111 010 0110 11112111122111 12 479999
Q ss_pred EEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-CC-------------CHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCC
Q 003222 636 VSSAVPEGKGVSSSASVEVASMSAIAAAHGL-NI-------------HPRDLALLCQKVENHIVGAPCGVMDQMASACGE 701 (838)
Q Consensus 636 i~s~iP~g~GLgSSAA~~va~~~al~~l~~~-~l-------------~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~ 701 (838)
|+|+||+|+|||||||++||++.|+..+++. ++ +.+++.++|+.+|+.+||.|||+ |++++++||
T Consensus 134 I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~a~s~~Gg 212 (387)
T PLN02677 134 VTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DNTVSTYGN 212 (387)
T ss_pred EEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hHHHHhcCC
Confidence 9999999999999999999999999999983 22 23588899999999999999995 999999999
Q ss_pred CCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 702 ANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 702 ~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
++. ++.... ++++.+.++.|+|+|||++|++.
T Consensus 213 ---~I~--f~~~~~-~~l~~~~~l~llv~dTgv~~sT~ 244 (387)
T PLN02677 213 ---MIK--FKSGEL-TRLQSNMPLKMLITNTRVGRNTK 244 (387)
T ss_pred ---eEE--EcCCCc-eecCCCCCceEEEEECCCCCcHH
Confidence 344 444444 56666677899999999999863
No 19
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.93 E-value=1.9e-25 Score=247.99 Aligned_cols=198 Identities=20% Similarity=0.213 Sum_probs=148.0
Q ss_pred EEEccccccccccccccC-CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 499 VARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
.++|||||+|+|||+||+ |.+||++||++++++.++++++..+++ .|... .. ..
T Consensus 2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~~~~i---------------------~s~~~--~~--~~ 56 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADGAADVI---------------------ISSDL--GP--QP 56 (358)
T ss_pred eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCCCceEE---------------------EecCC--CC--Cc
Confidence 578999999999999999 667999999999999999988654333 22111 00 01
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCCC----CCCChHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPEG----KGVSSSA 650 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~---~~g~~~~~g~~i~i~s~iP~g----~GLgSSA 650 (838)
+.+..+.. .+..+ .....+|.+|+++++..+.+ ..+..+ .||++.|.|++|.+ +||||||
T Consensus 57 ~~~~~~~~-----~~~~~-------~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-~g~~~~i~s~ip~~~g~k~GLGSSA 123 (358)
T TIGR01220 57 VGWRRHDG-----RLVVR-------DPDARSALAYVVSAIETVERYAGERNQKL-PALHLSVSSRLDEADGRKYGLGSSG 123 (358)
T ss_pred eEEEecCC-----ceeec-------ccccccchHHHHHHHHHHHHHHHhcCCCC-CceEEEEecCCCCcCCCCCCccHHH
Confidence 11111110 00000 01135799999999876533 335544 58999999999995 6999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE-ec------------------
Q 003222 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV-CQ------------------ 711 (838)
Q Consensus 651 A~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d-~~------------------ 711 (838)
|++||++.|++.++|.++++++++++|+.+|+.++|.++| +||+++++||. +.+. +.
T Consensus 124 A~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~sg-~D~~a~~~GG~---i~~~~~~~~~~~~~~~~~~~~~~~~ 199 (358)
T TIGR01220 124 AVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGSC-GDIAASTYGGW---IAYSTFDHDWVLQLARRVGVDRTLK 199 (358)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCCc-chhhhhhhCCE---EEEecCCHHHHhhhhhccchhhhhc
Confidence 9999999999999999999999999999999999999988 59999999994 3332 11
Q ss_pred ---CCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 712 ---PAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 712 ---~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
+....+++++|.++.|+|+|||+++++
T Consensus 200 ~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T 229 (358)
T TIGR01220 200 APWPGLSIRPLPAPKGLTLLIGWTGSPAST 229 (358)
T ss_pred cCCCccceeECCCCCCCEEEEEeCCCCcCc
Confidence 111125777777899999999999984
No 20
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.93 E-value=1.6e-25 Score=267.41 Aligned_cols=200 Identities=17% Similarity=0.204 Sum_probs=147.3
Q ss_pred ceEEEEccccccccccccc------cCCCeeeccccccc----eEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEE
Q 003222 496 EIFVARAPGRLDVMGGIAD------YSGSLVLQMPIREA----CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIV 565 (838)
Q Consensus 496 ~~~~~~APGRv~L~GeH~D------y~gg~vl~~ai~~~----~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~ 565 (838)
.+.+.+|||||||+||||| |+||.|||+||+++ +++.++++++.++++++.+ +.....
T Consensus 608 ~~~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d-----------~~~~~~- 675 (974)
T PRK13412 608 QIVWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSID-----------LGAMEV- 675 (974)
T ss_pred cEEEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECC-----------CCCceE-
Confidence 4555699999999999999 99999999999997 9999999988776665432 110001
Q ss_pred ecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHH-------------HHHHhCCCCCCCE
Q 003222 566 SYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV-------------LMTELGVRFEDSI 632 (838)
Q Consensus 566 s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~-------------~~~~~g~~~~~g~ 632 (838)
++ +.+++. . ....++|.+|+||++.. .+++....+..|+
T Consensus 676 ------------v~-~~~~l~------~---------~~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G~G~ 727 (974)
T PRK13412 676 ------------VR-TNEELR------D---------YKKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFGSGI 727 (974)
T ss_pred ------------Ee-cchhhc------c---------cccccchHhhhhhhheecccccccccchhHHHHHHHHhcCCCe
Confidence 11 111110 0 11336899999998741 1222111122599
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecC
Q 003222 633 SMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQP 712 (838)
Q Consensus 633 ~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~ 712 (838)
++.+.|+||.|+|||||||++||++.|++++++.++++++++++|+.+|..++|.+++ |||+++++||. +++++.+
T Consensus 728 ~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~-qDq~~a~~GG~---~~i~~~~ 803 (974)
T PRK13412 728 EITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGW-QDQYGGVLPGV---KLLQTGA 803 (974)
T ss_pred EEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCch-hhhhhHhcCCe---EEEEecC
Confidence 9999999999999999999999999999999999999999999999999887766655 99999999994 6666654
Q ss_pred C-c---eeeeeccCC------CeEEEEEeCCCCCcCC
Q 003222 713 A-E---LLGVVEIPS------HIRFWGIDSGIRHSVG 739 (838)
Q Consensus 713 ~-~---~~~~v~~~~------~~~~vi~~s~~~~~~~ 739 (838)
. . ...+++.+. +-.++|++||++|.+.
T Consensus 804 ~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~ 840 (974)
T PRK13412 804 GFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAK 840 (974)
T ss_pred CcccCcceeecCcchhhhhhccCcEEEEECCCeeeHH
Confidence 2 1 112333321 3468999999999753
No 21
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=4.7e-23 Score=227.06 Aligned_cols=318 Identities=18% Similarity=0.147 Sum_probs=198.0
Q ss_pred eecCCCcccHHHHHHHHHHHHHCCCe-EEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHh
Q 003222 21 YVTGHGFGHATRVVEVVRNLISAGHD-VHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETA 99 (838)
Q Consensus 21 ~v~g~G~GHv~r~laLA~~L~~~Gh~-V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 99 (838)
++.|.+.||+.|+++|+++|.++|++ |.++..... ......+..++.++.+ +.+.... .. .+..+...+
T Consensus 5 l~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~-~e~~l~~~~~~~~~~I--~~~~~~~----~~---~~~~~~~~~ 74 (357)
T COG0707 5 LTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDG-LEAFLVKQYGIEFELI--PSGGLRR----KG---SLKLLKAPF 74 (357)
T ss_pred EEeCCCccchhHHHHHHHHHHhhCccEEEEeccccc-ceeeeccccCceEEEE--ecccccc----cC---cHHHHHHHH
Confidence 34566689999999999999999995 666543221 1111111112333322 1221110 00 111111111
Q ss_pred hccHHHHHHHHHHHHhcCCCcEEEECC---CchHHHHHHHhCCcEEEE-ecCchhHHHHhhhhhcccchHHHHHHHHhhc
Q 003222 100 VAPRKSILKDEVEWLNSIKADLVVSDV---VPVACRAAADAGIRSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIAEDY 175 (838)
Q Consensus 100 ~~~~~~~l~~~~~~L~~~kPDlVVsD~---~~~~~~aA~~lgIP~V~i-s~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y 175 (838)
. .-..+.+..+.|++++||+|++.. ...+.++|..++||++.+ +|+.-.- .+.+...+
T Consensus 75 ~--~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~----------------ank~~~~~ 136 (357)
T COG0707 75 K--LLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGL----------------ANKILSKF 136 (357)
T ss_pred H--HHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcch----------------hHHHhHHh
Confidence 1 112345667889999999999864 445678889999999988 3432100 01111111
Q ss_pred cccceEE-ecC--CCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhHHhh---CCCC
Q 003222 176 SHCEFLI-RLP--GYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKEEY---LPSG 247 (838)
Q Consensus 176 ~~~d~ll-~~~--~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll~~l---~~~~ 247 (838)
. +.+. ..+ .....+....++++|+...... .+....+..+. .++++|+|++||+|.. .+++... +...
T Consensus 137 a--~~V~~~f~~~~~~~~~~~~~~tG~Pvr~~~~~-~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~ 212 (357)
T COG0707 137 A--KKVASAFPKLEAGVKPENVVVTGIPVRPEFEE-LPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLANR 212 (357)
T ss_pred h--ceeeeccccccccCCCCceEEecCcccHHhhc-cchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhhC
Confidence 1 0111 011 0001111123455555332222 22222222222 2788999999999985 2333322 1224
Q ss_pred cEE-EEeCCCCCC-----C-CCC-eEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCC--CChHHHH
Q 003222 248 WKC-LVCGASDSQ-----L-PPN-FIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF--NEEPFLR 317 (838)
Q Consensus 248 ~~~-vv~G~~~~~-----l-p~n-v~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~--~EQ~~Na 317 (838)
+.+ ..+|++... . ..| +++.+|.++|+++|+.+|++||++|.+|++|++++|+|+|++|.+.. ++|..||
T Consensus 213 ~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA 292 (357)
T COG0707 213 IQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNA 292 (357)
T ss_pred eEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHH
Confidence 544 467876411 1 123 88899999999999999999999999999999999999999998765 5888899
Q ss_pred HHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHH
Q 003222 318 NMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (838)
Q Consensus 318 ~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~ 370 (838)
+.+++.|+|.++...+++++.+.+.|.++++++..+. ..++.+.++++.+...
T Consensus 293 ~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~ 354 (357)
T COG0707 293 KFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLLLAL 354 (357)
T ss_pred HHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998654321 5778888888877765
No 22
>PLN02208 glycosyltransferase family protein
Probab=99.92 E-value=1.7e-22 Score=229.73 Aligned_cols=339 Identities=12% Similarity=0.115 Sum_probs=201.1
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccc-cCCCceeeeeeccC--CCcccccccccChHHHHHHHHH
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSE-IQSPRLFIRKVLLD--CGAVQADALTVDRLASLEKYSE 97 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~-i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~l~~~~~ 97 (838)
++.++.||++|++.||+.|+.+|++|||+++.... ..... .....+.+...... .|+........+... .+..
T Consensus 10 ~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~---~l~~ 86 (442)
T PLN02208 10 FPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI---SMDN 86 (442)
T ss_pred ecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH---HHHH
Confidence 58899999999999999999999999999864310 01100 00012222221111 122110000001111 1111
Q ss_pred HhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCc-hhHHHHhh--------hhhccc------
Q 003222 98 TAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFS-WDFIYAEY--------VMAAGH------ 162 (838)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~-~~~i~~~~--------~~~~~~------ 162 (838)
++......+.....+++++.+||+||+|+.+|+..+|+.+|||.+.+...+ +...+..+ .+..+.
T Consensus 87 ~~~~~~~~~~~~l~~~L~~~~~~cVV~D~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp~~~~~~~ 166 (442)
T PLN02208 87 LLSEALDLTRDQVEAAVRALRPDLIFFDFAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKLGVPPPGYPSSKVLFR 166 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEECCcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCccccCCCCCCCCCcccccC
Confidence 111122233344566778889999999987888999999999998773321 11011000 010110
Q ss_pred ------------chHHHHHHHHhhccccceEEecCCCC---------CCCCCCceeecCccccc-C--CcChHHHHHHhC
Q 003222 163 ------------HHRSIVWQIAEDYSHCEFLIRLPGYC---------PMPAFRDVIDVPLVVRR-L--HKSRKEVRKELG 218 (838)
Q Consensus 163 ------------~~~~i~~~l~~~y~~~d~ll~~~~~~---------~~p~~~~v~~ip~~~~~-~--~~~~~~~r~~l~ 218 (838)
.+..+..++...+..++-++.-++.. ..+.-+++..||++... . ...++++.+||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd 246 (442)
T PLN02208 167 ENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLS 246 (442)
T ss_pred HHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHh
Confidence 01111111112233344333222211 11112568889887542 2 335678899998
Q ss_pred CCCCCcEEEEEcCCCCc-h-hhhHH---hh--CCCCcEEEEe-C--CCC--CCCC---------CCeEECCCCCCHH--H
Q 003222 219 IEDDVKLLILNFGGQPA-G-WKLKE---EY--LPSGWKCLVC-G--ASD--SQLP---------PNFIKLPKDAYTP--D 275 (838)
Q Consensus 219 ~~~~~~~Vlvs~Gs~~~-~-~~ll~---~l--~~~~~~~vv~-G--~~~--~~lp---------~nv~~~~~~~~~p--d 275 (838)
..+++++|||||||... . .++.+ .+ ....+.+++- + ... ..+| .|+.+. .|+| +
T Consensus 247 ~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~---~W~PQ~~ 323 (442)
T PLN02208 247 GFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWG---GWVQQPL 323 (442)
T ss_pred cCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEee---ccCCHHH
Confidence 77778999999999875 2 22333 22 2234444443 1 101 1255 466553 5888 8
Q ss_pred HHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecCC---CChhhHHHHHHHHhhC
Q 003222 276 FMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRRD---LLTGHWKPYLERAISL 349 (838)
Q Consensus 276 lLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l~~~~---~~~~~l~~~l~~ll~~ 349 (838)
+|+| +.+||||||+||++|++++|||||++| .+.||+.|++++++ .|+|+.++..+ ++.+.+..+|++++++
T Consensus 324 iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P--~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~ 401 (442)
T PLN02208 324 ILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIP--FLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDK 401 (442)
T ss_pred HhcCCccCeEEccCCchHHHHHHHcCCCEEecC--cchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcC
Confidence 9987 678999999999999999999999999 89999999998775 89999997654 7889999999999865
Q ss_pred CCCccCCCCHHHHHHHHHHHHh
Q 003222 350 KPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 350 ~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+. ......++-|..|.+.+
T Consensus 402 ~~---e~g~~~r~~~~~~~~~~ 420 (442)
T PLN02208 402 DS---DLGKLVRSNHTKLKEIL 420 (442)
T ss_pred Cc---hhHHHHHHHHHHHHHHH
Confidence 41 01233555555555553
No 23
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-24 Score=241.06 Aligned_cols=340 Identities=17% Similarity=0.190 Sum_probs=200.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH-H
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE-K 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~-~ 94 (838)
|+|+|+..+. .||+.|+++|+++|+++||+|+|+|... +...+..-+..+..........+......+..++.. .
T Consensus 2 mkil~~~~~~-~Ghv~p~~aL~~eL~~~gheV~~~~~~~---~~~~ve~ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (406)
T COG1819 2 MKILFVVCGA-YGHVNPCLALGKELRRRGHEVVFASTGK---FKEFVEAAGLAFVAYPIRDSELATEDGKFAGVKSFRRL 77 (406)
T ss_pred ceEEEEeccc-cccccchHHHHHHHHhcCCeEEEEeCHH---HHHHHHHhCcceeeccccCChhhhhhhhhhccchhHHH
Confidence 6788888888 9999999999999999999999999853 222221112111111110000000000111111222 1
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCch----------hHHH--H----h---
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSW----------DFIY--A----E--- 155 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~----------~~i~--~----~--- 155 (838)
+.. ......+..+.+.+..||+|+.|...+..+++...++|.+....-.| ..+. . .
T Consensus 78 ~~~-----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
T COG1819 78 LQQ-----FKKLIRELLELLRELEPDLVVDDARLSLGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYP 152 (406)
T ss_pred hhh-----hhhhhHHHHHHHHhcchhhhhcchhhhhhhhhhhcccchhhhhhhhccCCcccccCcccccccccccccccc
Confidence 111 22344566788999999999999866655777888888765422111 0000 0 0
Q ss_pred hhhh-cc-c--chHHHHHHHHhhccc-cc-------eEEecCCCC--------CCC--CCC-ceeecCcccccCCcChHH
Q 003222 156 YVMA-AG-H--HHRSIVWQIAEDYSH-CE-------FLIRLPGYC--------PMP--AFR-DVIDVPLVVRRLHKSRKE 212 (838)
Q Consensus 156 ~~~~-~~-~--~~~~i~~~l~~~y~~-~d-------~ll~~~~~~--------~~p--~~~-~v~~ip~~~~~~~~~~~~ 212 (838)
.... .. . ...+ .......+.. .+ .++..++.. ..| .++ ....+|+....+.. +
T Consensus 153 ~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~ 228 (406)
T COG1819 153 LPPRLVRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGEAAN---E 228 (406)
T ss_pred cChhhccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccccccccccc---c
Confidence 0000 00 0 0000 0000000000 00 000000000 000 001 01112221111111 1
Q ss_pred HHHHhCCCCCCcEEEEEcCCCCchhh----hHHhhCCCCcEEEEe-CCCCC---CCCCCeEECCCCCCHHHHHhhcCEEE
Q 003222 213 VRKELGIEDDVKLLILNFGGQPAGWK----LKEEYLPSGWKCLVC-GASDS---QLPPNFIKLPKDAYTPDFMAASDCML 284 (838)
Q Consensus 213 ~r~~l~~~~~~~~Vlvs~Gs~~~~~~----ll~~l~~~~~~~vv~-G~~~~---~lp~nv~~~~~~~~~pdlLa~adl~I 284 (838)
.. .....++++||+|+||.....+ +++++...++.+++. |.... .+|.|+.+.++.+ ...++++||+||
T Consensus 229 ~~--~~~~~d~~~vyvslGt~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p-~~~~l~~ad~vI 305 (406)
T COG1819 229 LP--YWIPADRPIVYVSLGTVGNAVELLAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVP-QLELLPRADAVI 305 (406)
T ss_pred Cc--chhcCCCCeEEEEcCCcccHHHHHHHHHHHHhcCCcEEEEeccccccccccCCCceEEecCCC-HHHHhhhcCEEE
Confidence 11 1134589999999999985322 233455667776665 44222 2799999976543 237999999999
Q ss_pred ecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------C
Q 003222 285 GKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------G 355 (838)
Q Consensus 285 t~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~ 355 (838)
||||+||++||+++|||+|++| ...||+.||.++++.|+|+.+..+.++++.++++|+++|+++...+ .
T Consensus 306 ~hGG~gtt~eaL~~gvP~vv~P--~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~ 383 (406)
T COG1819 306 HHGGAGTTSEALYAGVPLVVIP--DGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEFK 383 (406)
T ss_pred ecCCcchHHHHHHcCCCEEEec--CCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 6689999999999999999999999999999999999998763221 4
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 003222 356 GINGGEVAAHILQETAIG 373 (838)
Q Consensus 356 ~~~g~~~~a~~i~~~~~~ 373 (838)
..+|..++|+.|++....
T Consensus 384 ~~~g~~~~a~~le~~~~~ 401 (406)
T COG1819 384 EEDGPAKAADLLEEFARE 401 (406)
T ss_pred hcccHHHHHHHHHHHHhc
Confidence 677788899998887543
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.92 E-value=3e-23 Score=235.01 Aligned_cols=335 Identities=15% Similarity=0.114 Sum_probs=196.4
Q ss_pred CCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcc-cccccccChHHHHHHHHHHhhcc
Q 003222 24 GHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAV-QADALTVDRLASLEKYSETAVAP 102 (838)
Q Consensus 24 g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~~~~~~~~ 102 (838)
.++.||+.|+++||++|+++||+|+|++... +...+...++.+.......... ..+.. .. .....+...+...
T Consensus 3 ~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~---~~~~v~~~G~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 76 (392)
T TIGR01426 3 IPAHGHVNPTLGVVEELVARGHRVTYATTEE---FAERVEAAGAEFVLYGSALPPPDNPPEN-TE--EEPIDIIEKLLDE 76 (392)
T ss_pred CCccccccccHHHHHHHHhCCCeEEEEeCHH---HHHHHHHcCCEEEecCCcCccccccccc-cC--cchHHHHHHHHHH
Confidence 3568999999999999999999999998853 2222222233333321111100 00000 00 0111111111111
Q ss_pred HHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchhH-HHH--------hhhhh---cccchHHHHH
Q 003222 103 RKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWDF-IYA--------EYVMA---AGHHHRSIVW 169 (838)
Q Consensus 103 ~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~~-i~~--------~~~~~---~~~~~~~i~~ 169 (838)
....+....+.+++++||+||+|. .+++..+|+.+|||+|.++...+.. .+. ..... .......+.+
T Consensus 77 ~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T TIGR01426 77 AEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAEEGAIAERGLAEYVA 156 (392)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccccccccccccchhhhhhhccccchhHHHHH
Confidence 222344456677888999999997 6788889999999999874321100 000 00000 0000011111
Q ss_pred ---HHHhhcc----c--------cc-eEEecCCCC-C-CCCCC-ceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEc
Q 003222 170 ---QIAEDYS----H--------CE-FLIRLPGYC-P-MPAFR-DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNF 230 (838)
Q Consensus 170 ---~l~~~y~----~--------~d-~ll~~~~~~-~-~p~~~-~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~ 230 (838)
.+...+. . .+ .+...+..+ + .+.++ ++..+|+....+.. ...++....++++||+++
T Consensus 157 ~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~----~~~~~~~~~~~~~v~vs~ 232 (392)
T TIGR01426 157 RLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKE----DGSWERPGDGRPVVLISL 232 (392)
T ss_pred HHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCccc----cCCCCCCCCCCCEEEEec
Confidence 1111111 0 00 111111111 1 11222 35566664332111 111333335788999999
Q ss_pred CCCCch-h----hhHHhhCCCCcEEE-EeCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcC
Q 003222 231 GGQPAG-W----KLKEEYLPSGWKCL-VCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (838)
Q Consensus 231 Gs~~~~-~----~ll~~l~~~~~~~v-v~G~~~~-----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~G 299 (838)
||.... . .+++.+...++.++ .+|.... .+++|+.+.+|++. .++|++||+||+|||++|++|++++|
T Consensus 233 Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~-~~ll~~~~~~I~hgG~~t~~Eal~~G 311 (392)
T TIGR01426 233 GTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQ-LEILKKADAFITHGGMNSTMEALFNG 311 (392)
T ss_pred CccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCH-HHHHhhCCEEEECCCchHHHHHHHhC
Confidence 996432 1 23334544555443 4565432 26789998776553 38999999999999999999999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHH
Q 003222 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (838)
Q Consensus 300 vP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~ 370 (838)
+|+|++| ...||..|++++++.|+|+.+...+++++.+.++|++++.++.... ...+|++.+|+.|+++
T Consensus 312 ~P~v~~p--~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 312 VPMVAVP--QGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred CCEEecC--CcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999 5689999999999999999998888888999999999997753110 2455666777766665
Q ss_pred h
Q 003222 371 A 371 (838)
Q Consensus 371 ~ 371 (838)
+
T Consensus 390 ~ 390 (392)
T TIGR01426 390 L 390 (392)
T ss_pred h
Confidence 3
No 25
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=226.05 Aligned_cols=208 Identities=22% Similarity=0.286 Sum_probs=139.0
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
..++|||+|+|+|||++++|.++++++|++|||+.+++..++++.+. +|++++.
T Consensus 5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san~~i~l~--------------l~di~~~------------ 58 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQ--------------LPDISIE------------ 58 (397)
T ss_pred eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCCCeEEEe--------------cccCCce------------
Confidence 47899999999999999999999999999999999988877665543 4555442
Q ss_pred eeccCCccc-----------cCCCCcc---hhhhhcc---cCCCCCCChhHHHHHHHHHHHHHhCCCCCCC----EEEEE
Q 003222 578 FDMDLSDFM-----------DEGKPMS---YEKAKKY---FDTNPSQKWAAYVAGTILVLMTELGVRFEDS----ISMLV 636 (838)
Q Consensus 578 ~~~~l~~~~-----------~~~~p~~---~~~~~~~---~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g----~~i~i 636 (838)
+.|++.++. ..+.|.+ .+..+++ ++......-.--+...+.-++ -.-.+. .| +++.+
T Consensus 59 ~~w~l~~~~~~l~~~~~~~~~~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~-~l~~~~-~g~lp~~~v~v 136 (397)
T KOG1511|consen 59 KAWSLADFNGALPEQRSTYESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFL-GLCLRA-PGTLPALTVVV 136 (397)
T ss_pred EEEEhhhhhhhhhhhhhhhhccCCcchhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHH-Hhhhcc-cCCCcceEEEE
Confidence 234443321 0011110 1111111 111111100000111111111 111111 34 89999
Q ss_pred EeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH-----------HHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeE
Q 003222 637 SSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP-----------RDLALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (838)
Q Consensus 637 ~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~-----------~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~ 705 (838)
.|.+|+|+|||||||+.||+++++..+.|.--++ .-+-+||++.|..+||+|||+ |+++|++||.
T Consensus 137 ~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGi-DnaV~t~Gg~--- 212 (397)
T KOG1511|consen 137 DSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGI-DNAVCTYGGL--- 212 (397)
T ss_pred eccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCccc-chhhhccCce---
Confidence 9999999999999999999999999998863222 345689999999999999995 9999999994
Q ss_pred EEEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 706 LAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 706 l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
+ .+++....+.++..+.++++|+||+++|++.
T Consensus 213 i--~f~kg~~~~~Lk~~~~L~illtnTrv~RnTk 244 (397)
T KOG1511|consen 213 I--SFKKGVEIESLKHLPPLRILLTNTRVPRNTK 244 (397)
T ss_pred E--EeecCccceecccCCCceEEEEccccCccHH
Confidence 3 3444422255655567999999999999864
No 26
>PRK03926 mevalonate kinase; Provisional
Probab=99.90 E-value=9.5e-23 Score=222.56 Aligned_cols=171 Identities=25% Similarity=0.305 Sum_probs=138.4
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
+.++|||||+|+|||+||+||.++.+||++++++.+.+++++ +.+.+.
T Consensus 2 ~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~~----------------------~~i~~~---------- 49 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS----------------------IYIESD---------- 49 (302)
T ss_pred eEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCCc----------------------eEEecc----------
Confidence 578999999999999999999999999999999999876431 112110
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
+ . ....|.+|+..++..+.+..+ . .|+++.+.++||.|+|||||||+.+|++
T Consensus 50 ~----~---------------------~~~~~~~~~~~~~~~~~~~~~--~-~g~~i~i~~~iP~~~GLGSSsA~~~a~~ 101 (302)
T PRK03926 50 Y----G---------------------KTGEKHPYVSAAIEKMREEAD--K-DGVTVSITSQIPVGSGLGSSAAVTVATI 101 (302)
T ss_pred c----c---------------------cccchhHHHHHHHHHHHHhcC--C-CCeEEEEecCCCCCCCccHHHHHHHHHH
Confidence 0 0 012467788888877665544 3 4999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCc
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~ 737 (838)
.|++.+++.++++.+++++|+.+|+.++|.+|| +|++++.+||. +++... .+++.+ ++.+++++|+.+++
T Consensus 102 ~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg-~D~~~~~~Gg~---~~~~~~-----~~l~~~-~~~~vl~~~~~~~s 171 (302)
T PRK03926 102 GALNRLLGLGLSLEEIAKLGHKVELLVQGAASP-TDTYVSTMGGF---VTIPDR-----KKLPFP-ECGIVVGYTGSSGS 171 (302)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCch-HHHHHHhcCCe---EEEcCC-----CcCCCC-CceEEEEECCCCCc
Confidence 999999999999999999999999999999999 69999999994 333211 133433 67789999999887
Q ss_pred C
Q 003222 738 V 738 (838)
Q Consensus 738 ~ 738 (838)
+
T Consensus 172 T 172 (302)
T PRK03926 172 T 172 (302)
T ss_pred H
Confidence 5
No 27
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.89 E-value=2.8e-21 Score=223.32 Aligned_cols=344 Identities=14% Similarity=0.127 Sum_probs=191.8
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccC-----CCc--eeeeeeccC---CCcccc-ccc
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQ-----SPR--LFIRKVLLD---CGAVQA-DAL 84 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~-----~~~--~~~~~~~~~---~g~~~~-~~~ 84 (838)
+|++ ++.+|.||++|++.||+.|..+|++|||++..... .+..... .+. +.+...... .|+... ...
T Consensus 7 hVvl-vp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~~ 85 (482)
T PLN03007 7 HILF-FPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCENV 85 (482)
T ss_pred EEEE-ECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcccc
Confidence 4433 57889999999999999999999999999875311 1111100 000 011111000 111100 000
Q ss_pred c----cChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCc-hh-----HHH
Q 003222 85 T----VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-----FIY 153 (838)
Q Consensus 85 ~----~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~-~~-----~i~ 153 (838)
. .+..... .+...+......+.....++++..+||+||+|. .+|+..+|+.+|||.+.+...+ +. ..+
T Consensus 86 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 164 (482)
T PLN03007 86 DFITSNNNDDSG-DLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIR 164 (482)
T ss_pred cccccccccchH-HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHH
Confidence 0 0000000 111111111223444456677778999999996 8899999999999998763211 00 000
Q ss_pred Hhh-------------hhhccc-------------chHHHHH---HHHhhccccceEEecCCCC-------CCCC-C-Cc
Q 003222 154 AEY-------------VMAAGH-------------HHRSIVW---QIAEDYSHCEFLIRLPGYC-------PMPA-F-RD 195 (838)
Q Consensus 154 ~~~-------------~~~~~~-------------~~~~i~~---~l~~~y~~~d~ll~~~~~~-------~~p~-~-~~ 195 (838)
..+ .+..+. ....+.. .+.+....++.++.-++.. .... . ..
T Consensus 165 ~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~~~ 244 (482)
T PLN03007 165 VHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVAKR 244 (482)
T ss_pred hcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccCCC
Confidence 000 111100 0000111 1111122222222211100 0111 1 24
Q ss_pred eeecCccccc----------CC---cChHHHHHHhCCCCCCcEEEEEcCCCCch-----hhhHHhhCCCCcEEEE-eCCC
Q 003222 196 VIDVPLVVRR----------LH---KSRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCLV-CGAS 256 (838)
Q Consensus 196 v~~ip~~~~~----------~~---~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-----~~ll~~l~~~~~~~vv-~G~~ 256 (838)
+..|||+... .+ ..++++.+|++..+++++|||||||.... .++...+...++.|++ ++..
T Consensus 245 ~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~ 324 (482)
T PLN03007 245 AWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKN 324 (482)
T ss_pred EEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 6778885321 10 12356788888766788999999998642 2333344444554333 3321
Q ss_pred -C-----CCC---------CCCeEECCCCCCHH--HHHhhc--CEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHH
Q 003222 257 -D-----SQL---------PPNFIKLPKDAYTP--DFMAAS--DCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLR 317 (838)
Q Consensus 257 -~-----~~l---------p~nv~~~~~~~~~p--dlLa~a--dl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na 317 (838)
. ..+ +.|+.+. .|+| ++|+|+ .+||||||+||++||+++|||||++| .+.||+.||
T Consensus 325 ~~~~~~~~~lp~~~~~r~~~~g~~v~---~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P--~~~DQ~~na 399 (482)
T PLN03007 325 ENQGEKEEWLPEGFEERTKGKGLIIR---GWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP--VGAEQFYNE 399 (482)
T ss_pred CcccchhhcCCHHHHHHhccCCEEEe---cCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeecc--chhhhhhhH
Confidence 0 013 4466664 4777 899985 56999999999999999999999999 899999999
Q ss_pred HHHH---HcCcEEEE------ecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 318 NMLE---FYQGGVEM------IRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 318 ~~l~---~~G~g~~l------~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
++++ +.|+++.. +...++.+.+.++|++++.++ .....++.|..|.+.+.
T Consensus 400 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-----~~~~~r~~a~~~~~~a~ 458 (482)
T PLN03007 400 KLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE-----EAEERRLRAKKLAEMAK 458 (482)
T ss_pred HHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHH
Confidence 9886 44555432 334578899999999999654 23455666666666553
No 28
>PLN00414 glycosyltransferase family protein
Probab=99.88 E-value=9.5e-21 Score=215.69 Aligned_cols=342 Identities=16% Similarity=0.152 Sum_probs=197.3
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccc-ccCCCceeeeeeccC--CCcccccccccChHHHHHHHHH
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTS-EIQSPRLFIRKVLLD--CGAVQADALTVDRLASLEKYSE 97 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~-~i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~l~~~~~ 97 (838)
++.++.||++|++.||+.|+.+|++|||++..... .... ....+.+.+...... .|+........+..... ..
T Consensus 10 vPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~~---~~ 86 (446)
T PLN00414 10 YPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPNST---KK 86 (446)
T ss_pred ecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchhhH---HH
Confidence 57889999999999999999999999999865310 1111 000112333221100 12211000000111100 11
Q ss_pred HhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCc------hhHHHH--hh-hhhccc------
Q 003222 98 TAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFS------WDFIYA--EY-VMAAGH------ 162 (838)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~------~~~i~~--~~-~~~~~~------ 162 (838)
.+......+.....++++..+||+||+|+.+|+..+|+.+|||.+.+...+ |..... .. .+..+.
T Consensus 87 ~~~~a~~~l~~~l~~~L~~~~p~cVV~D~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg~p~~~~~~~ 166 (446)
T PLN00414 87 PIFDAMDLLRDQIEAKVRALKPDLIFFDFVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPDYPLSKVALR 166 (446)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEECCchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCCCCCCcCcCc
Confidence 111112223334456677789999999998899999999999998873322 100000 00 010110
Q ss_pred --c------hH---HHHHHHHhhccccceEEecCCCC-------CCC-CC-CceeecCcccccCC-----cChHHHHHHh
Q 003222 163 --H------HR---SIVWQIAEDYSHCEFLIRLPGYC-------PMP-AF-RDVIDVPLVVRRLH-----KSRKEVRKEL 217 (838)
Q Consensus 163 --~------~~---~i~~~l~~~y~~~d~ll~~~~~~-------~~p-~~-~~v~~ip~~~~~~~-----~~~~~~r~~l 217 (838)
. +. .......+....++-++.-++.. .+. .. ++++.|||+..... ....++.+||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WL 246 (446)
T PLN00414 167 GHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWL 246 (446)
T ss_pred hhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHH
Confidence 0 00 00001112222333333222211 000 11 35778888753211 1124577899
Q ss_pred CCCCCCcEEEEEcCCCCch--hhhHH---hhCCCCc--EEEEe---CCCC--CCCCCCeEEC----CC--CCCHH--HHH
Q 003222 218 GIEDDVKLLILNFGGQPAG--WKLKE---EYLPSGW--KCLVC---GASD--SQLPPNFIKL----PK--DAYTP--DFM 277 (838)
Q Consensus 218 ~~~~~~~~Vlvs~Gs~~~~--~~ll~---~l~~~~~--~~vv~---G~~~--~~lp~nv~~~----~~--~~~~p--dlL 277 (838)
+..+++++|||||||.... .++.+ .|...+. .+++- |... ..+|+|+... +. ..|+| ++|
T Consensus 247 D~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL 326 (446)
T PLN00414 247 NGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLIL 326 (446)
T ss_pred hcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHh
Confidence 9888889999999998752 33433 3333343 33332 1111 1256665311 11 25888 799
Q ss_pred hhc--CEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-HcCcEEEEecC---CCChhhHHHHHHHHhhCCC
Q 003222 278 AAS--DCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE-FYQGGVEMIRR---DLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 278 a~a--dl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~-~~G~g~~l~~~---~~~~~~l~~~l~~ll~~~~ 351 (838)
+|+ ++||||||+||++|++++|||||++| .+.||+.||++++ +.|+|+.+... .++.+.+++++++++.++.
T Consensus 327 ~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P--~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~ 404 (446)
T PLN00414 327 SHPSVGCFVNHCGFGSMWESLVSDCQIVFIP--QLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDS 404 (446)
T ss_pred cCCccceEEecCchhHHHHHHHcCCCEEecC--cccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCCh
Confidence 875 88999999999999999999999999 7999999999995 78999999643 3788999999999996531
Q ss_pred CccCCCCHHHHHHHHHHHHh
Q 003222 352 CYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 352 ~~~~~~~g~~~~a~~i~~~~ 371 (838)
......++.|..|.+.+
T Consensus 405 ---e~g~~~r~~a~~~~~~~ 421 (446)
T PLN00414 405 ---EIGNLVKRNHKKLKETL 421 (446)
T ss_pred ---hhHHHHHHHHHHHHHHH
Confidence 01233566666776664
No 29
>PLN02210 UDP-glucosyl transferase
Probab=99.88 E-value=1.5e-20 Score=215.03 Aligned_cols=334 Identities=14% Similarity=0.146 Sum_probs=194.9
Q ss_pred EEEEEeecCCCcccHHHHHHHHHH--HHHCCCeEEEEeCCCCc-cccccc-CCCceeeeeeccCCCcccccccccChHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRN--LISAGHDVHVVTGAPDF-VFTSEI-QSPRLFIRKVLLDCGAVQADALTVDRLAS 91 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~--L~~~Gh~V~~v~~~~~~-~~~~~i-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 91 (838)
.+|++ ++.++.||++|++.||+. |..+|+.|||++..... ...... ....+.+... ..|+... ...+..
T Consensus 9 ~hvv~-~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~--~~glp~~--~~~~~~-- 81 (456)
T PLN02210 9 THVLM-VTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFF--SDGLPKD--DPRAPE-- 81 (456)
T ss_pred CEEEE-eCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEEC--CCCCCCC--cccCHH--
Confidence 34533 578899999999999999 55899999999875311 111100 0112333221 1122210 001111
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCch-hH-HHHhh------------
Q 003222 92 LEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-DF-IYAEY------------ 156 (838)
Q Consensus 92 l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~-~~-i~~~~------------ 156 (838)
.+...+ .........+++++.+||+||+|+ .+|+..+|+.+|||.+.+...+. .+ .+..+
T Consensus 82 --~~~~~~---~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~ 156 (456)
T PLN02210 82 --TLLKSL---NKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLED 156 (456)
T ss_pred --HHHHHH---HHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccc
Confidence 111111 111223345667777899999996 88999999999999987622110 00 00000
Q ss_pred ------hhhccc-c---------------hHHHHHHHHhhccccceEEecCCCCC-------CCCCCceeecCccccc--
Q 003222 157 ------VMAAGH-H---------------HRSIVWQIAEDYSHCEFLIRLPGYCP-------MPAFRDVIDVPLVVRR-- 205 (838)
Q Consensus 157 ------~~~~~~-~---------------~~~i~~~l~~~y~~~d~ll~~~~~~~-------~p~~~~v~~ip~~~~~-- 205 (838)
++..+. . +......+......++.++.-++... ....++++.|||....
T Consensus 157 ~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~~~~ 236 (456)
T PLN02210 157 LNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVSPFL 236 (456)
T ss_pred cCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCchhh
Confidence 110000 0 00111111112222333332222110 0112467888886521
Q ss_pred --CC-------------cChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eCCCC-C-C---
Q 003222 206 --LH-------------KSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASD-S-Q--- 259 (838)
Q Consensus 206 --~~-------------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G~~~-~-~--- 259 (838)
.. ...+++.+|++..+++++|||||||.... . ++...+...++.|++ ++... . .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~ 316 (456)
T PLN02210 237 LGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQV 316 (456)
T ss_pred cCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhh
Confidence 00 01234567887666788999999998642 2 333345455555443 33211 0 1
Q ss_pred ----C-CCCeEECCCCCCHH--HHHhhcC--EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEE
Q 003222 260 ----L-PPNFIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEM 329 (838)
Q Consensus 260 ----l-p~nv~~~~~~~~~p--dlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l 329 (838)
. +++..+. .|+| ++|+|++ +||||||+||++|++++|||||++| .+.||+.||+++++ .|+|+.+
T Consensus 317 ~~~~~~~~~g~v~---~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P--~~~DQ~~na~~~~~~~g~G~~l 391 (456)
T PLN02210 317 LQEMVKEGQGVVL---EWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYP--SWTDQPIDARLLVDVFGIGVRM 391 (456)
T ss_pred HHhhccCCCeEEE---ecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecc--cccccHHHHHHHHHHhCeEEEE
Confidence 1 2444443 5777 7998865 9999999999999999999999999 79999999999987 8999998
Q ss_pred ecC----CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 330 IRR----DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 330 ~~~----~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
... .++.+.+.+++++++.++ .....++-|..|.+.+
T Consensus 392 ~~~~~~~~~~~~~l~~av~~~m~~~-----~g~~~r~~a~~l~~~a 432 (456)
T PLN02210 392 RNDAVDGELKVEEVERCIEAVTEGP-----AAADIRRRAAELKHVA 432 (456)
T ss_pred eccccCCcCCHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHH
Confidence 642 478899999999998654 2234455666666654
No 30
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.88 E-value=5.2e-22 Score=211.90 Aligned_cols=184 Identities=26% Similarity=0.326 Sum_probs=141.2
Q ss_pred EEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
.++|||++.|+|||++++|.+++++||++++++.++..++.++. +.+.+
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~---------------------i~~~~---------- 50 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIV---------------------IESSD---------- 50 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCCCcEE---------------------EeccC----------
Confidence 46899999999999999999999999999999999988764432 22211
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHH
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~ 658 (838)
++-+. ++. +. + ..|+..++..+....+.....+|++.|.|+||+|+|||||||+.||++.
T Consensus 51 -~~~~~-------~~~---------~~--~-~~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~ 110 (307)
T COG1577 51 -LKSST-------LER---------DE--D-EGYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIK 110 (307)
T ss_pred -CCCcc-------ccc---------cc--c-chHHHHHHHHHHHHhcccCCCCeEEEEecCCCCCCCccHHHHHHHHHHH
Confidence 00000 100 00 1 2677766665543333212369999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 659 al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
|++.+||..++++++++++.++|+.++|.+|| +|.++|++|| ++++..+ ... +++.++..-.|+|.|||+++++
T Consensus 111 al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg-~D~a~~~~gg---~v~~~~~-~~~-~~l~~~~~~~~~I~~tg~~~sT 184 (307)
T COG1577 111 ALSAYFGVELSPEELAKLANKVELIVQGKASG-IDIATITYGG---LVAFKKG-FDF-EKLEIELLGTLVIGDTGVPGST 184 (307)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCc-ccceEEEeCC---EEEEecC-CCc-cccccccCCeEEEEEcCCcCcH
Confidence 99999999999999999999999999999999 7999999999 4666542 122 4555543337899999999986
Q ss_pred C
Q 003222 739 G 739 (838)
Q Consensus 739 ~ 739 (838)
.
T Consensus 185 ~ 185 (307)
T COG1577 185 K 185 (307)
T ss_pred H
Confidence 4
No 31
>PLN02670 transferase, transferring glycosyl groups
Probab=99.88 E-value=2.6e-20 Score=212.61 Aligned_cols=343 Identities=13% Similarity=0.138 Sum_probs=195.6
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccccc--CCCceeeeeeccC--CCcccccccccChHHHHHHHH
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEI--QSPRLFIRKVLLD--CGAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i--~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~l~~~~ 96 (838)
++.++.||++|++.||+.|+.+|..|||++..... ...... ..+.+.+...... .|+........+.......+.
T Consensus 12 ~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~~~~~~ 91 (472)
T PLN02670 12 FPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQLL 91 (472)
T ss_pred eCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccchhhHHHH
Confidence 58899999999999999999999999999765311 111100 0112333332110 122110000011110000011
Q ss_pred HHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCch-h-HHHH----------------hh-
Q 003222 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-D-FIYA----------------EY- 156 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~-~-~i~~----------------~~- 156 (838)
.. ....+.....+++++.+|++||+|. .+|+...|+.+|||.+.+...+- . ..+. ..
T Consensus 92 ~~---~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (472)
T PLN02670 92 KK---AFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAEDFT 168 (472)
T ss_pred HH---HHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCcccccc
Confidence 00 1111223335567777899999996 88999999999999988743220 0 0000 00
Q ss_pred -hhhc-c-c--------chHHHH----------HHHH---hhccccceEEecCCCC-------CC-CCC-CceeecCccc
Q 003222 157 -VMAA-G-H--------HHRSIV----------WQIA---EDYSHCEFLIRLPGYC-------PM-PAF-RDVIDVPLVV 203 (838)
Q Consensus 157 -~~~~-~-~--------~~~~i~----------~~l~---~~y~~~d~ll~~~~~~-------~~-p~~-~~v~~ip~~~ 203 (838)
.+.. + . ....+. .... .....++.++.-++.. .+ ..+ ++++.|||+.
T Consensus 169 ~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~ 248 (472)
T PLN02670 169 VVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLP 248 (472)
T ss_pred CCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCC
Confidence 0000 0 0 000000 0000 0111222222211111 00 011 3577888874
Q ss_pred cc--C--C-c--Ch---HHHHHHhCCCCCCcEEEEEcCCCCc-h----hhhHHhhCCCCcEEEE-eCC--CC-----CCC
Q 003222 204 RR--L--H-K--SR---KEVRKELGIEDDVKLLILNFGGQPA-G----WKLKEEYLPSGWKCLV-CGA--SD-----SQL 260 (838)
Q Consensus 204 ~~--~--~-~--~~---~~~r~~l~~~~~~~~Vlvs~Gs~~~-~----~~ll~~l~~~~~~~vv-~G~--~~-----~~l 260 (838)
.. . . . .. +++.+||+..+++++|||||||+.. . .++...+...+..|++ +.. .. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~l 328 (472)
T PLN02670 249 PVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEML 328 (472)
T ss_pred ccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcC
Confidence 31 1 0 0 11 4577899877678999999999864 2 2233344333333332 221 11 125
Q ss_pred CCC---------eEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEE
Q 003222 261 PPN---------FIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGV 327 (838)
Q Consensus 261 p~n---------v~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~ 327 (838)
|+| +.+ ..|+| ++|+| +.+||||||+||++|++++|||||++| .+.||+.||+++++.|+|+
T Consensus 329 p~~f~~~~~~rG~vv---~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P--~~~DQ~~Na~~v~~~g~Gv 403 (472)
T PLN02670 329 PDGFEERVKGRGMIH---VGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFP--VLNEQGLNTRLLHGKKLGL 403 (472)
T ss_pred ChHHHHhccCCCeEE---eCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCc--chhccHHHHHHHHHcCeeE
Confidence 655 333 25888 89977 666999999999999999999999999 8999999999999999999
Q ss_pred EEecC----CCChhhHHHHHHHHhhCCC--Ccc----------CCCCHHHHHHHHHHHHhc
Q 003222 328 EMIRR----DLLTGHWKPYLERAISLKP--CYE----------GGINGGEVAAHILQETAI 372 (838)
Q Consensus 328 ~l~~~----~~~~~~l~~~l~~ll~~~~--~~~----------~~~~g~~~~a~~i~~~~~ 372 (838)
.+... .++.+.+.++|++++.+++ .|+ ....++.++|+.+++++.
T Consensus 404 ~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 464 (472)
T PLN02670 404 EVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLR 464 (472)
T ss_pred EeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 99753 3788999999999997642 121 345555556666655543
No 32
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.87 E-value=7.6e-20 Score=207.78 Aligned_cols=331 Identities=13% Similarity=0.142 Sum_probs=190.9
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccCCCceeeeeeccCCCccccc-ccccChHHHHHHHHHHh
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQSPRLFIRKVLLDCGAVQAD-ALTVDRLASLEKYSETA 99 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~l~~~~~~~ 99 (838)
++.++.||++|++.||+.|+.+|+.|||++..... ..... ..+.+.+... ..|+.... ....+....+..+..
T Consensus 11 ~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-~~~~i~~~~i--pdglp~~~~~~~~~~~~~~~~~~~-- 85 (449)
T PLN02173 11 VPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-PSSPISIATI--SDGYDQGGFSSAGSVPEYLQNFKT-- 85 (449)
T ss_pred ecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-CCCCEEEEEc--CCCCCCcccccccCHHHHHHHHHH--
Confidence 57889999999999999999999999999775211 11110 1123444442 12332100 000011111111111
Q ss_pred hccHHHHHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHhCCcEEEEecCc---hhHHHH-h-------h-hhhcc
Q 003222 100 VAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS---WDFIYA-E-------Y-VMAAG 161 (838)
Q Consensus 100 ~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~---~~~i~~-~-------~-~~~~~ 161 (838)
.......++|++ .+| ++||+|+ .+|+..+|+.+|||.+.+...+ ..-.+. . + .+..+
T Consensus 86 -----~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~~~~~pg~p 160 (449)
T PLN02173 86 -----FGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSLTLPIKDLP 160 (449)
T ss_pred -----hhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCccCCCCCCC
Confidence 112223344443 356 9999996 8899999999999998863311 000000 0 0 01000
Q ss_pred c--------------chHHHHHHH---HhhccccceEEecCCCCC-------CCCCCceeecCccccc--------C-C-
Q 003222 162 H--------------HHRSIVWQI---AEDYSHCEFLIRLPGYCP-------MPAFRDVIDVPLVVRR--------L-H- 207 (838)
Q Consensus 162 ~--------------~~~~i~~~l---~~~y~~~d~ll~~~~~~~-------~p~~~~v~~ip~~~~~--------~-~- 207 (838)
. ..+.....+ ......++-++.-++... +....++..|||+... . .
T Consensus 161 ~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~ 240 (449)
T PLN02173 161 LLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQIKSDND 240 (449)
T ss_pred CCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhcccccccccc
Confidence 0 000011111 111223333332222110 0111357778887421 0 0
Q ss_pred --------cChHHHHHHhCCCCCCcEEEEEcCCCCc-hh----hhHHhhCCCCcEEEEe-CCC--CC-C----C-CCCeE
Q 003222 208 --------KSRKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYLPSGWKCLVC-GAS--DS-Q----L-PPNFI 265 (838)
Q Consensus 208 --------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~~----~ll~~l~~~~~~~vv~-G~~--~~-~----l-p~nv~ 265 (838)
...+.+.+||+..+.+++|||||||... .. ++...+....+.+++- +.. .+ . . +.|+.
T Consensus 241 ~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~~~~~~~ 320 (449)
T PLN02173 241 YDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETVDKDKSL 320 (449)
T ss_pred ccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhhcCCceE
Confidence 0112467888877778899999999865 22 2333453333333332 111 11 1 1 46677
Q ss_pred ECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCC----CCh
Q 003222 266 KLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRD----LLT 336 (838)
Q Consensus 266 ~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~-G~g~~l~~~~----~~~ 336 (838)
+. +|+| ++|+| +.+||||||+||++|++++|||||++| .+.||+.|++++++. |+|+.+...+ ++.
T Consensus 321 i~---~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P--~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~ 395 (449)
T PLN02173 321 VL---KWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMP--QWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKR 395 (449)
T ss_pred Ee---CCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecC--chhcchHHHHHHHHHhCceEEEeecccCCcccH
Confidence 64 5777 89988 559999999999999999999999999 899999999999865 9998886432 477
Q ss_pred hhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 337 GHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 337 ~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
+.+.+++++++.++ .....++.|..|.+.+.
T Consensus 396 e~v~~av~~vm~~~-----~~~~~r~~a~~~~~~a~ 426 (449)
T PLN02173 396 EEIEFSIKEVMEGE-----KSKEMKENAGKWRDLAV 426 (449)
T ss_pred HHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHH
Confidence 89999999999654 22345666666666543
No 33
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.87 E-value=4.3e-20 Score=212.35 Aligned_cols=342 Identities=13% Similarity=0.118 Sum_probs=196.5
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCc-ccccccCCCceeeeeeccCCCcccccccccChH
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDF-VFTSEIQSPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~~-~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
..+.+|++ ++.++.||++|++.||+.|..+ ||.|||++..... ........+++.+.... .+.........+..
T Consensus 8 ~~~~hVvl-vp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp--~~~p~~~~~~~~~~ 84 (459)
T PLN02448 8 TTSCHVVA-MPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIP--NVIPSELVRAADFP 84 (459)
T ss_pred CCCcEEEE-ECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECC--CCCCCccccccCHH
Confidence 33456654 4678899999999999999999 9999999875311 11111111234554421 11111000011221
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcC--CCcEEEECC-CchHHHHHHHhCCcEEEEecCc------hhHHHH------
Q 003222 90 ASLEKYSETAVAPRKSILKDEVEWLNSI--KADLVVSDV-VPVACRAAADAGIRSVCVTNFS------WDFIYA------ 154 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~~~L~~~--kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~~~i~~------ 154 (838)
..+..+. ........+++++. ++|+||+|. .+|+..+|+.+|||.+.+.... |.....
T Consensus 85 ~~~~~~~-------~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~ 157 (459)
T PLN02448 85 GFLEAVM-------TKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGH 157 (459)
T ss_pred HHHHHHH-------HHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccC
Confidence 1111111 11222334445543 679999995 8899999999999998874322 110000
Q ss_pred -h------------hhhhccc----chH--------HHHHHHHhh---ccccceEEecCCCCC-------C-CCC-Ccee
Q 003222 155 -E------------YVMAAGH----HHR--------SIVWQIAED---YSHCEFLIRLPGYCP-------M-PAF-RDVI 197 (838)
Q Consensus 155 -~------------~~~~~~~----~~~--------~i~~~l~~~---y~~~d~ll~~~~~~~-------~-p~~-~~v~ 197 (838)
. .++..+. ... ...+.+.+. ...++.++.-++... + ..+ ..+.
T Consensus 158 ~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~ 237 (459)
T PLN02448 158 FPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVY 237 (459)
T ss_pred CCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceE
Confidence 0 0110000 000 001111111 112222222111100 0 011 2456
Q ss_pred ecCccccc--CC-------c--ChHHHHHHhCCCCCCcEEEEEcCCCCch-----hhhHHhhCCCCcEEEEeCCCC-C--
Q 003222 198 DVPLVVRR--LH-------K--SRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCLVCGASD-S-- 258 (838)
Q Consensus 198 ~ip~~~~~--~~-------~--~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-----~~ll~~l~~~~~~~vv~G~~~-~-- 258 (838)
.|||.... .. . ...++.+|+...+++++|||||||.... .++...+...++.+++..... .
T Consensus 238 ~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~ 317 (459)
T PLN02448 238 PIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEASRL 317 (459)
T ss_pred EecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchhhH
Confidence 67775421 00 1 1136778888766788999999998541 233445555566555432211 1
Q ss_pred -C-CCCCeEECCCCCCHH--HHHhhcC--EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEec
Q 003222 259 -Q-LPPNFIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIR 331 (838)
Q Consensus 259 -~-lp~nv~~~~~~~~~p--dlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l~~ 331 (838)
+ .+.|+.+. +|+| ++|+|.+ +||||||+||++||+++|||||++| .+.||+.|++++++ .|+|+.+..
T Consensus 318 ~~~~~~~~~v~---~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P--~~~DQ~~na~~v~~~~g~G~~~~~ 392 (459)
T PLN02448 318 KEICGDMGLVV---PWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFP--LFWDQPLNSKLIVEDWKIGWRVKR 392 (459)
T ss_pred hHhccCCEEEe---ccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecc--ccccchhhHHHHHHHhCceEEEec
Confidence 1 23577764 4777 8998855 5999999999999999999999999 78999999999987 588888753
Q ss_pred -----CCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 332 -----RDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 332 -----~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
..++++.+++++++++.++. ......++.|..|.+.+.
T Consensus 393 ~~~~~~~~~~~~l~~av~~vl~~~~---~~~~~~r~~a~~~~~~~~ 435 (459)
T PLN02448 393 EVGEETLVGREEIAELVKRFMDLES---EEGKEMRRRAKELQEICR 435 (459)
T ss_pred ccccCCcCcHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHH
Confidence 24678999999999997531 122356667777777654
No 34
>PLN02764 glycosyltransferase family protein
Probab=99.87 E-value=1.1e-19 Score=205.87 Aligned_cols=346 Identities=13% Similarity=0.086 Sum_probs=197.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccCCC-c--eeeeeeccCCCcccccccccChH-H
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQSP-R--LFIRKVLLDCGAVQADALTVDRL-A 90 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~~~-~--~~~~~~~~~~g~~~~~~~~~~~~-~ 90 (838)
++|++ ++.++.||++|++.||+.|+.+|+.|||++..... ........+ . +.+.+.....|+........+.. .
T Consensus 6 ~Hvvl-~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~ 84 (453)
T PLN02764 6 FHVLM-YPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVT 84 (453)
T ss_pred cEEEE-ECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChh
Confidence 45543 57889999999999999999999999999765311 111100001 1 22211111113211000000001 1
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCch--hHHH--H-hh----hhhcc
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSW--DFIY--A-EY----VMAAG 161 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~--~~i~--~-~~----~~~~~ 161 (838)
....+... ...+.....++|++.+||+||+|+.+|+..+|+.+|||.+.+...+- ...+ . .. .+..+
T Consensus 85 ~~~~~~~a----~~~~~~~~~~~l~~~~~~~iV~D~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp 160 (453)
T PLN02764 85 SADLLMSA----MDLTRDQVEVVVRAVEPDLIFFDFAHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELGVPPPGYP 160 (453)
T ss_pred HHHHHHHH----HHHhHHHHHHHHHhCCCCEEEECCchhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCCCCCCCCC
Confidence 11111111 11222344566777789999999988999999999999988733210 0000 0 00 01000
Q ss_pred c--------------------c---hHHHHHHHHhhccccceEEecCCCCC-------CCCC--CceeecCcccccC---
Q 003222 162 H--------------------H---HRSIVWQIAEDYSHCEFLIRLPGYCP-------MPAF--RDVIDVPLVVRRL--- 206 (838)
Q Consensus 162 ~--------------------~---~~~i~~~l~~~y~~~d~ll~~~~~~~-------~p~~--~~v~~ip~~~~~~--- 206 (838)
. . ...+..++......++.++.-+++.. +... ++++.|||+...+
T Consensus 161 ~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~ 240 (453)
T PLN02764 161 SSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKT 240 (453)
T ss_pred CCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCcccc
Confidence 0 0 00111111111222332332222110 0001 3577888875322
Q ss_pred CcChHHHHHHhCCCCCCcEEEEEcCCCCc-h-hhhHH---hhCCC--CcEEEEe---CCCC--CCCCCCeEEC--CC---
Q 003222 207 HKSRKEVRKELGIEDDVKLLILNFGGQPA-G-WKLKE---EYLPS--GWKCLVC---GASD--SQLPPNFIKL--PK--- 269 (838)
Q Consensus 207 ~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~-~~ll~---~l~~~--~~~~vv~---G~~~--~~lp~nv~~~--~~--- 269 (838)
...++++.+||+..+++++|||||||... . .++.+ .|... .+.+++- |... ..+|+|+... +.
T Consensus 241 ~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v 320 (453)
T PLN02764 241 RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVV 320 (453)
T ss_pred ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcE
Confidence 11245688999988889999999999865 2 33333 33333 3444443 1111 1266665321 11
Q ss_pred -CCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-HcCcEEEEecC---CCChhhHH
Q 003222 270 -DAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE-FYQGGVEMIRR---DLLTGHWK 340 (838)
Q Consensus 270 -~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~-~~G~g~~l~~~---~~~~~~l~ 340 (838)
..|+| ++|+| +++||||||+||++|++++|||||++| .+.||+.||++++ ..|+|+.+... .++.+.+.
T Consensus 321 ~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P--~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~ 398 (453)
T PLN02764 321 WGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVP--QLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLR 398 (453)
T ss_pred EeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCC--cccchHHHHHHHHHHhceEEEeccccCCccCHHHHH
Confidence 25888 89988 788999999999999999999999999 7999999999996 58999887543 47889999
Q ss_pred HHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 341 PYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 341 ~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+++++++.++. . .....++.|..|.+.+
T Consensus 399 ~av~~vm~~~~-~--~g~~~r~~a~~~~~~~ 426 (453)
T PLN02764 399 DAINSVMKRDS-E--IGNLVKKNHTKWRETL 426 (453)
T ss_pred HHHHHHhcCCc-h--hHHHHHHHHHHHHHHH
Confidence 99999996541 1 1223445555555543
No 35
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.87 E-value=9.9e-20 Score=207.66 Aligned_cols=337 Identities=13% Similarity=0.116 Sum_probs=193.2
Q ss_pred ceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH
Q 003222 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE 93 (838)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ 93 (838)
++.++++ ++.++.||++|++.||+.|..+|+.|||++...... ......+.+.+... ..|+...+.-.......+.
T Consensus 6 ~~~HVvl-vPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~-~~~~~~~~i~~~~i--p~glp~~~~~~~~~~~~~~ 81 (451)
T PLN02410 6 ARRRVVL-VPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYF-SPSDDFTDFQFVTI--PESLPESDFKNLGPIEFLH 81 (451)
T ss_pred CCCEEEE-ECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccc-ccccCCCCeEEEeC--CCCCCcccccccCHHHHHH
Confidence 3445533 588999999999999999999999999997753211 11111112333332 1232210000001111111
Q ss_pred HHHHHhhccHHHHHHHHHHHHhc------CCCcEEEECC-CchHHHHHHHhCCcEEEEecCc---hh--H----HHH---
Q 003222 94 KYSETAVAPRKSILKDEVEWLNS------IKADLVVSDV-VPVACRAAADAGIRSVCVTNFS---WD--F----IYA--- 154 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~------~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~---~~--~----i~~--- 154 (838)
.+.. .......++|++ -+|++||+|+ .+|+..+|+.+|||.+.+...+ .. . ...
T Consensus 82 ~~~~-------~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~ 154 (451)
T PLN02410 82 KLNK-------ECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNV 154 (451)
T ss_pred HHHH-------HhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccC
Confidence 1111 111112222322 2569999996 8899999999999998874332 10 0 000
Q ss_pred --h----------hhhhccc----ch--------HHHHHHHHh--hccccceEEecCCCCC-------C-CCC-Cceeec
Q 003222 155 --E----------YVMAAGH----HH--------RSIVWQIAE--DYSHCEFLIRLPGYCP-------M-PAF-RDVIDV 199 (838)
Q Consensus 155 --~----------~~~~~~~----~~--------~~i~~~l~~--~y~~~d~ll~~~~~~~-------~-p~~-~~v~~i 199 (838)
. .++..+. .+ +.+...+.. ....++-++.-++... . ... +++..+
T Consensus 155 ~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~v 234 (451)
T PLN02410 155 LAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPI 234 (451)
T ss_pred CCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEe
Confidence 0 0000000 00 001111110 1122333332222110 0 011 357788
Q ss_pred Cccccc---CCcC---hHHHHHHhCCCCCCcEEEEEcCCCCch--h---hhHHhhCCCCcEEEE-eCCC------C----
Q 003222 200 PLVVRR---LHKS---RKEVRKELGIEDDVKLLILNFGGQPAG--W---KLKEEYLPSGWKCLV-CGAS------D---- 257 (838)
Q Consensus 200 p~~~~~---~~~~---~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~---~ll~~l~~~~~~~vv-~G~~------~---- 257 (838)
||+... +... ..+..+||+..+.+++|||||||...- . ++...|...+..|++ +... .
T Consensus 235 Gpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~l 314 (451)
T PLN02410 235 GPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESL 314 (451)
T ss_pred cccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcC
Confidence 886431 1111 123567888777789999999998752 2 233344333333332 2211 0
Q ss_pred C-C----CCCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEE
Q 003222 258 S-Q----LPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGV 327 (838)
Q Consensus 258 ~-~----lp~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~-G~g~ 327 (838)
+ . .++|..+. +|+| ++|+| +++||||||+||++||+++|||||++| .+.||+.||+++++. |+|+
T Consensus 315 p~~f~er~~~~g~v~---~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P--~~~DQ~~na~~~~~~~~~G~ 389 (451)
T PLN02410 315 PKEFSKIISGRGYIV---KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKP--FSSDQKVNARYLECVWKIGI 389 (451)
T ss_pred ChhHHHhccCCeEEE---ccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEecc--ccccCHHHHHHHHHHhCeeE
Confidence 1 1 23555654 5787 89988 777999999999999999999999999 799999999999866 9999
Q ss_pred EEecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 328 EMIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 328 ~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
.+. ..++.+.+.++|++++.++ ......+.|..|.+.+.
T Consensus 390 ~~~-~~~~~~~v~~av~~lm~~~-----~~~~~r~~a~~l~~~~~ 428 (451)
T PLN02410 390 QVE-GDLDRGAVERAVKRLMVEE-----EGEEMRKRAISLKEQLR 428 (451)
T ss_pred EeC-CcccHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHHH
Confidence 887 5788899999999999764 22345666666666543
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=190.46 Aligned_cols=337 Identities=21% Similarity=0.247 Sum_probs=206.8
Q ss_pred CceEEEEEee-cCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCC---CcccccccCCCceeeeee-ccCCCcccccccc
Q 003222 13 SKHLVFAYYV-TGHGFGHATRVVEVVRNLISA--GHDVHVVTGAP---DFVFTSEIQSPRLFIRKV-LLDCGAVQADALT 85 (838)
Q Consensus 13 m~~~~Il~~v-~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~---~~~~~~~i~~~~~~~~~~-~~~~g~~~~~~~~ 85 (838)
+++++|+||+ ...|.||+.||+.+|++|++. |.+|+++++.+ .|.....+ ..+..++. ..+.|.+......
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gV--d~V~LPsl~k~~~G~~~~~d~~ 84 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGV--DFVKLPSLIKGDNGEYGLVDLD 84 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccC--ceEecCceEecCCCceeeeecC
Confidence 3456777776 678999999999999999998 99999999875 22222222 12233332 1223433221122
Q ss_pred cChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHH------HHH--hCCcE-EEEecCchhHHHHhh
Q 003222 86 VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRA------AAD--AGIRS-VCVTNFSWDFIYAEY 156 (838)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~a------A~~--lgIP~-V~is~~~~~~i~~~~ 156 (838)
.+ +....++ +.+++ ...++.+|||++|+|..|.|+.- +.. .+-+. +.+++.. ++....
T Consensus 85 ~~----l~e~~~~----Rs~li---l~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~--D~p~~~ 151 (400)
T COG4671 85 GD----LEETKKL----RSQLI---LSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIR--DIPQEL 151 (400)
T ss_pred CC----HHHHHHH----HHHHH---HHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhh--hchhhh
Confidence 22 2222221 33333 44468999999999987777431 111 13222 3332211 000000
Q ss_pred hhhcccchHHHHHHHHhhccccceEEe-cC-CCCCCCC-------CCceeecCccccc-CC-cChHHHHHHhCCCCCCcE
Q 003222 157 VMAAGHHHRSIVWQIAEDYSHCEFLIR-LP-GYCPMPA-------FRDVIDVPLVVRR-LH-KSRKEVRKELGIEDDVKL 225 (838)
Q Consensus 157 ~~~~~~~~~~i~~~l~~~y~~~d~ll~-~~-~~~~~p~-------~~~v~~ip~~~~~-~~-~~~~~~r~~l~~~~~~~~ 225 (838)
... .........+...|.. .++. -| ++-+... ..+++++|.+.+. +. ..|.. ..++...
T Consensus 152 ~~~--w~~~~~~~~I~r~yD~--V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~~------~~pE~~~ 221 (400)
T COG4671 152 EAD--WRRAETVRLINRFYDL--VLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPPH------EAPEGFD 221 (400)
T ss_pred ccc--hhhhHHHHHHHHhheE--EEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCCc------CCCccce
Confidence 000 0001111122223321 1111 11 1111111 1246666666321 10 11111 0135567
Q ss_pred EEEEcCCCCchhhhHHhh-----CCCCc---EEEEeCCCCCC---------CC--CCeEECCCCCCHHHHHhhcCEEEec
Q 003222 226 LILNFGGQPAGWKLKEEY-----LPSGW---KCLVCGASDSQ---------LP--PNFIKLPKDAYTPDFMAASDCMLGK 286 (838)
Q Consensus 226 Vlvs~Gs~~~~~~ll~~l-----~~~~~---~~vv~G~~~~~---------lp--~nv~~~~~~~~~pdlLa~adl~It~ 286 (838)
|+||.||...+.++.+.. ..+++ .+++.|+..|. .+ +++.++.|...+-++|+.|+.+|+.
T Consensus 222 Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm 301 (400)
T COG4671 222 ILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSM 301 (400)
T ss_pred EEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhheeeec
Confidence 999999888776665521 11222 45678988763 24 7899999998888999999999999
Q ss_pred CChhhHHHHHHcCCcEEEEeCC-CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc--cCCCCHHHHH
Q 003222 287 IGYGTVSEALAYKLPFVFVRRD-YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY--EGGINGGEVA 363 (838)
Q Consensus 287 gG~~Tv~Eal~~GvP~l~iP~~-~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~--~~~~~g~~~~ 363 (838)
|||||+||-+++|||.|+||+. ...||-.-|++++++|..-++.+++++++.++++|...+..++.. .-..+|++.+
T Consensus 302 ~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~~~~~~L~L~G~~~~ 381 (400)
T COG4671 302 GGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPSPSKPHLDLEGLEHI 381 (400)
T ss_pred ccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCCCCccccCchhhHhH
Confidence 9999999999999999999985 345788899999999999999999999999999999988754221 2578999999
Q ss_pred HHHHHHHhccC
Q 003222 364 AHILQETAIGK 374 (838)
Q Consensus 364 a~~i~~~~~~~ 374 (838)
+.++.+++..+
T Consensus 382 a~~l~e~L~~~ 392 (400)
T COG4671 382 ARILAELLSTR 392 (400)
T ss_pred HHHHHHHhhhh
Confidence 99998887543
No 37
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.86 E-value=1.4e-19 Score=206.87 Aligned_cols=331 Identities=15% Similarity=0.158 Sum_probs=192.5
Q ss_pred ecCCCcccHHHHHHHHHHHH-HCCCeEEEEeCCCC--cccccccCCCceeeeeecc-CC-CcccccccccChHHHHHHHH
Q 003222 22 VTGHGFGHATRVVEVVRNLI-SAGHDVHVVTGAPD--FVFTSEIQSPRLFIRKVLL-DC-GAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~-~~Gh~V~~v~~~~~--~~~~~~i~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~l~~~~ 96 (838)
++.++.||++|++.||+.|. .+|+.|||++.... .+.......+.+.+..... +. |+... ..+. ...+.
T Consensus 11 ~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~---~~~~---~~~~~ 84 (481)
T PLN02992 11 FSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDP---SAHV---VTKIG 84 (481)
T ss_pred eCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCC---CccH---HHHHH
Confidence 58899999999999999998 68999999977521 1111111111233322110 00 11100 0011 11111
Q ss_pred HHhhccHHHHHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh-H-HHHhh---------------
Q 003222 97 ETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD-F-IYAEY--------------- 156 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~-~-i~~~~--------------- 156 (838)
.. .........++|++ .+|++||+|+ .+|+..+|+.+|||.+.+...+.. . .+..+
T Consensus 85 ~~----~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~ 160 (481)
T PLN02992 85 VI----MREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQR 160 (481)
T ss_pred HH----HHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccCC
Confidence 11 11122333455554 3789999996 889999999999999887432210 0 00000
Q ss_pred ----hhhccc-chHHH-----------HHHH---HhhccccceEEecCCCC-------CCC------C--CCceeecCcc
Q 003222 157 ----VMAAGH-HHRSI-----------VWQI---AEDYSHCEFLIRLPGYC-------PMP------A--FRDVIDVPLV 202 (838)
Q Consensus 157 ----~~~~~~-~~~~i-----------~~~l---~~~y~~~d~ll~~~~~~-------~~p------~--~~~v~~ip~~ 202 (838)
++..+. ....+ ...+ ...+..++.++.-++.. .+. . .++++.|||+
T Consensus 161 ~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl 240 (481)
T PLN02992 161 KPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPL 240 (481)
T ss_pred CCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCc
Confidence 000000 00000 0000 11122333333222110 000 0 1357788887
Q ss_pred ccc--CCcChHHHHHHhCCCCCCcEEEEEcCCCCc-h-h---hhHHhhCCCC--cEEEEe----CC-------------C
Q 003222 203 VRR--LHKSRKEVRKELGIEDDVKLLILNFGGQPA-G-W---KLKEEYLPSG--WKCLVC----GA-------------S 256 (838)
Q Consensus 203 ~~~--~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~-~---~ll~~l~~~~--~~~vv~----G~-------------~ 256 (838)
... ......++.+||+..+.+++|||||||+.. . . ++...|...+ +.+++- +. .
T Consensus 241 ~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~ 320 (481)
T PLN02992 241 CRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETR 320 (481)
T ss_pred cCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccc
Confidence 542 112234577899876678899999999865 1 2 2333343333 333331 10 0
Q ss_pred C--C-CCCCC---------eEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 003222 257 D--S-QLPPN---------FIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (838)
Q Consensus 257 ~--~-~lp~n---------v~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l 320 (838)
. . .+|+| +.+. .|+| ++|+| +.+||||||+||++|++++|||||++| .+.||+.||+++
T Consensus 321 ~~~~~~lp~~f~eR~~~rg~vv~---~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P--~~~DQ~~na~~~ 395 (481)
T PLN02992 321 DNTPEYLPEGFVSRTHDRGFVVP---SWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWP--LFAEQNMNAALL 395 (481)
T ss_pred cchhhhCCHHHHHHhcCCCEEEe---ecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecC--ccchhHHHHHHH
Confidence 0 1 15554 5553 5777 89988 456999999999999999999999999 899999999999
Q ss_pred -HHcCcEEEEecC--CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 321 -EFYQGGVEMIRR--DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 321 -~~~G~g~~l~~~--~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
+++|+|+.++.. .++.+.+.++|++++.++ ......+.|+.+.+.+.
T Consensus 396 ~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~-----~g~~~r~~a~~~~~~a~ 445 (481)
T PLN02992 396 SDELGIAVRSDDPKEVISRSKIEALVRKVMVEE-----EGEEMRRKVKKLRDTAE 445 (481)
T ss_pred HHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHHH
Confidence 599999999763 478899999999999754 22345666666666553
No 38
>PLN02207 UDP-glycosyltransferase
Probab=99.85 E-value=9.4e-19 Score=199.68 Aligned_cols=342 Identities=11% Similarity=0.088 Sum_probs=194.2
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCC--CeEEEEeCCCCc--ccccccC-----CCceeeeeeccCCCccccc-
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHVVTGAPDF--VFTSEIQ-----SPRLFIRKVLLDCGAVQAD- 82 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~G--h~V~~v~~~~~~--~~~~~i~-----~~~~~~~~~~~~~g~~~~~- 82 (838)
|++.++++ ++..|.||++|++.+|+.|..+| ..|||++..... .....+. .+.+.+.... .+.....
T Consensus 1 ~~~~hvv~-~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp--~~~~~~~~ 77 (468)
T PLN02207 1 MRNAELIF-IPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVP--ELEEKPTL 77 (468)
T ss_pred CCCcEEEE-eCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeC--CCCCCCcc
Confidence 55556644 58899999999999999999998 899998654211 1111111 1123333321 0100000
Q ss_pred ccccChHHHHHHHHHHhhccHHHHHHHHHHHHhcC----CC-cEEEECC-CchHHHHHHHhCCcEEEEecCc------hh
Q 003222 83 ALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSI----KA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS------WD 150 (838)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~----kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~~ 150 (838)
....+... .+..........+.....+++++. +| ++||+|. .+|+..+|+.+|||.+.+...+ +.
T Consensus 78 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~ 154 (468)
T PLN02207 78 GGTQSVEA---YVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQ 154 (468)
T ss_pred ccccCHHH---HHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 00111111 111111101010111123334322 45 8999995 8899999999999998873322 10
Q ss_pred HHH---H-h--h----------hhhc-cc-c-------------hHHHHHHHHhhccccceEEecCCCC---C-------
Q 003222 151 FIY---A-E--Y----------VMAA-GH-H-------------HRSIVWQIAEDYSHCEFLIRLPGYC---P------- 189 (838)
Q Consensus 151 ~i~---~-~--~----------~~~~-~~-~-------------~~~i~~~l~~~y~~~d~ll~~~~~~---~------- 189 (838)
.+. . . . ++.. +. . +..+...+ .....++.++.-++.. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~vlvNtf~~LE~~~~~~~~~ 233 (468)
T PLN02207 155 YLADRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLA-ILFTKANGILVNSSFDIEPYSVNHFLD 233 (468)
T ss_pred HhhhccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHH-HhcccCCEEEEEchHHHhHHHHHHHHh
Confidence 000 0 0 0 0100 00 0 00111111 1122233333222111 0
Q ss_pred CCCCCceeecCccccc-CCc-------ChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eC-
Q 003222 190 MPAFRDVIDVPLVVRR-LHK-------SRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CG- 254 (838)
Q Consensus 190 ~p~~~~v~~ip~~~~~-~~~-------~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G- 254 (838)
.+..++++.|||+... ... ..+++.+||+..+++++|||||||.... . ++...+...+..|++ +.
T Consensus 234 ~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~ 313 (468)
T PLN02207 234 EQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRT 313 (468)
T ss_pred ccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 1234568889887542 111 1256889998777788999999998652 2 233344444444433 22
Q ss_pred CCC--CC-C--------CCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHH
Q 003222 255 ASD--SQ-L--------PPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM 319 (838)
Q Consensus 255 ~~~--~~-l--------p~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~ 319 (838)
... .. + ++|..+. .|+| ++|+| +.+||||||+||++||+++|||||++| .+.||+.|+++
T Consensus 314 ~~~~~~~~lp~~f~er~~~~g~i~---~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P--~~~DQ~~Na~~ 388 (468)
T PLN02207 314 EEVTNDDLLPEGFLDRVSGRGMIC---GWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWP--MYAEQQLNAFL 388 (468)
T ss_pred CCccccccCCHHHHhhcCCCeEEE---EeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecC--ccccchhhHHH
Confidence 111 11 3 3455443 5888 79988 777999999999999999999999999 89999999998
Q ss_pred HHH-cCcEEEEec------C-CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 320 LEF-YQGGVEMIR------R-DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 320 l~~-~G~g~~l~~------~-~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
+++ .|+|+.+.. . -++.+.+.++|++++.+ .....++.|..|.+.+.
T Consensus 389 ~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~------~~~~~r~~a~~l~~~a~ 443 (468)
T PLN02207 389 MVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK------DNNVVRKRVMDISQMIQ 443 (468)
T ss_pred HHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHH
Confidence 876 899987632 1 24778999999999852 12456666666666653
No 39
>PLN02562 UDP-glycosyltransferase
Probab=99.84 E-value=5.1e-19 Score=202.23 Aligned_cols=328 Identities=12% Similarity=0.086 Sum_probs=188.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccC-CCceeeeeeccCCCcccccccccChHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQ-SPRLFIRKVLLDCGAVQADALTVDRLASLEK 94 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 94 (838)
+|++ ++.++.||++|++.||+.|..+|+.|||+++.... .....+. .+++.+... ..|.. +....+. ..
T Consensus 8 HVVl-vPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~l--p~g~~--~~~~~~~----~~ 78 (448)
T PLN02562 8 KIIL-VPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSI--SDGQD--DDPPRDF----FS 78 (448)
T ss_pred EEEE-EcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEEC--CCCCC--CCccccH----HH
Confidence 4433 58899999999999999999999999999875311 1111111 112333332 12221 1111111 11
Q ss_pred HHHHhhccHHHHHHHHHHHHhcC---CC-cEEEECC-CchHHHHHHHhCCcEEEEecCc------hhHH--H--Hh----
Q 003222 95 YSETAVAPRKSILKDEVEWLNSI---KA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS------WDFI--Y--AE---- 155 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~---kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~~~i--~--~~---- 155 (838)
+...+. ..+.....+++++. .| ++||+|+ .+|+..+|+.+|||.+.+...+ |... . ..
T Consensus 79 l~~a~~---~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 79 IENSME---NTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred HHHHHH---HhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 111110 01122233444432 23 8999996 8899999999999998873322 1000 0 00
Q ss_pred -----------hhhhccc----c----------hHHHHHHHH---hhccccceEEecCCCC-------------CCCCCC
Q 003222 156 -----------YVMAAGH----H----------HRSIVWQIA---EDYSHCEFLIRLPGYC-------------PMPAFR 194 (838)
Q Consensus 156 -----------~~~~~~~----~----------~~~i~~~l~---~~y~~~d~ll~~~~~~-------------~~p~~~ 194 (838)
..+..+. . .......+. .....++.++.-++.. +.+..+
T Consensus 156 ~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNP 235 (448)
T ss_pred ccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCC
Confidence 0010000 0 000011111 1112223233211110 112235
Q ss_pred ceeecCcccccCC-----c--Ch--HHHHHHhCCCCCCcEEEEEcCCCCc--hhh----hHHhhCCCCcEEEE-eCC---
Q 003222 195 DVIDVPLVVRRLH-----K--SR--KEVRKELGIEDDVKLLILNFGGQPA--GWK----LKEEYLPSGWKCLV-CGA--- 255 (838)
Q Consensus 195 ~v~~ip~~~~~~~-----~--~~--~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~----ll~~l~~~~~~~vv-~G~--- 255 (838)
+++.||++...+. . .+ .+..+||+..+.+++|||||||+.. ..+ +...+...+..|++ ...
T Consensus 236 ~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~ 315 (448)
T PLN02562 236 QILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR 315 (448)
T ss_pred CEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch
Confidence 6888988753211 1 12 2345888876667899999999752 222 33334334443332 221
Q ss_pred --CCCC----CCCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cC
Q 003222 256 --SDSQ----LPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQ 324 (838)
Q Consensus 256 --~~~~----lp~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G 324 (838)
..+. +++|+.+. +|+| ++|+| +.+||||||+||++|++++|||+|++| .+.||+.||+++++ .|
T Consensus 316 ~~l~~~~~~~~~~~~~v~---~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P--~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 316 EGLPPGYVERVSKQGKVV---SWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYP--VAGDQFVNCAYIVDVWK 390 (448)
T ss_pred hhCCHHHHHHhccCEEEE---ecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCC--cccchHHHHHHHHHHhC
Confidence 1111 45788774 5777 89988 668999999999999999999999999 89999999999976 58
Q ss_pred cEEEEecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 325 GGVEMIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 325 ~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+|+.+. +++.+.+.++|++++.++ ...+.|..+.+.+
T Consensus 391 ~g~~~~--~~~~~~l~~~v~~~l~~~--------~~r~~a~~l~~~~ 427 (448)
T PLN02562 391 IGVRIS--GFGQKEVEEGLRKVMEDS--------GMGERLMKLRERA 427 (448)
T ss_pred ceeEeC--CCCHHHHHHHHHHHhCCH--------HHHHHHHHHHHHH
Confidence 887774 577889999999998643 3455556565543
No 40
>PLN03004 UDP-glycosyltransferase
Probab=99.84 E-value=6.2e-19 Score=200.50 Aligned_cols=165 Identities=14% Similarity=0.183 Sum_probs=116.8
Q ss_pred CceeecCcccccCC---c---ChHHHHHHhCCCCCCcEEEEEcCCCCc-hh----hhHHhhCCCCcEEEE-eCCC-----
Q 003222 194 RDVIDVPLVVRRLH---K---SRKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYLPSGWKCLV-CGAS----- 256 (838)
Q Consensus 194 ~~v~~ip~~~~~~~---~---~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~~----~ll~~l~~~~~~~vv-~G~~----- 256 (838)
++++.|||+...+. . ...+..+||+..+++++|||||||+.. .. ++...|...+..|++ +...
T Consensus 235 ~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~ 314 (451)
T PLN03004 235 RNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEK 314 (451)
T ss_pred CCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccc
Confidence 36788888753211 0 113467889877778999999999865 22 233334333333332 2211
Q ss_pred ----CCC-CC---------CCeEECCCCCCHH--HHHhhcCE--EEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHH
Q 003222 257 ----DSQ-LP---------PNFIKLPKDAYTP--DFMAASDC--MLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRN 318 (838)
Q Consensus 257 ----~~~-lp---------~nv~~~~~~~~~p--dlLa~adl--~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~ 318 (838)
... +| .|+.+. +|+| ++|+|+++ ||||||+||++|++++|||||++| .+.||+.||+
T Consensus 315 ~~~~~~~~lp~gf~er~~~~g~~v~---~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P--~~~DQ~~na~ 389 (451)
T PLN03004 315 TELDLKSLLPEGFLSRTEDKGMVVK---SWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWP--LYAEQRFNRV 389 (451)
T ss_pred cccchhhhCChHHHHhccCCcEEEE---eeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecc--ccccchhhHH
Confidence 111 44 577663 5777 89999776 999999999999999999999999 7999999999
Q ss_pred HHHH-cCcEEEEecC---CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 319 MLEF-YQGGVEMIRR---DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 319 ~l~~-~G~g~~l~~~---~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
++++ .|+|+.++.. .++.+.+.++|++++.++ ..++.|..|.+.+
T Consensus 390 ~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~--------~~r~~a~~~~~~a 438 (451)
T PLN03004 390 MIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC--------PVRERTMAMKNAA 438 (451)
T ss_pred HHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH--------HHHHHHHHHHHHH
Confidence 9975 6999999754 468899999999998642 3555555555543
No 41
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.84 E-value=5.6e-19 Score=204.00 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=116.4
Q ss_pred CceeecCcccc--cC-----CcChHHHHHHhCCCCCCcEEEEEcCCCCc-hh----hhHHhhCCCCcEEEEe-CCC----
Q 003222 194 RDVIDVPLVVR--RL-----HKSRKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYLPSGWKCLVC-GAS---- 256 (838)
Q Consensus 194 ~~v~~ip~~~~--~~-----~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~~----~ll~~l~~~~~~~vv~-G~~---- 256 (838)
++++.||++.. .+ ...++++.+|++..+.+++|||||||+.. .. ++...+...++.|++. ...
T Consensus 238 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~ 317 (481)
T PLN02554 238 PPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNI 317 (481)
T ss_pred CCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccc
Confidence 56888998732 21 12345788999876677899999999854 22 3333444444544432 210
Q ss_pred ---------C-CC-CCC--------CeEECCCCCCHH--HHHh--hcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCCh
Q 003222 257 ---------D-SQ-LPP--------NFIKLPKDAYTP--DFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEE 313 (838)
Q Consensus 257 ---------~-~~-lp~--------nv~~~~~~~~~p--dlLa--~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ 313 (838)
. .. +|+ |+.+ ++|+| ++|+ ++++||||||+||+.|++++|||||++| .+.||
T Consensus 318 ~~~~~~~~~~~~~~lp~~~~~r~~~~g~v---~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P--~~~DQ 392 (481)
T PLN02554 318 MKEPPGEFTNLEEILPEGFLDRTKDIGKV---IGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWP--LYAEQ 392 (481)
T ss_pred cccccccccchhhhCChHHHHHhccCceE---EeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecC--ccccc
Confidence 0 01 343 4444 35888 7995 5889999999999999999999999999 89999
Q ss_pred HHHHH-HHHHcCcEEEEec-----------CCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 314 PFLRN-MLEFYQGGVEMIR-----------RDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 314 ~~Na~-~l~~~G~g~~l~~-----------~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+.||+ ++++.|+|+.+.. ..++.+.+.++|++++.+. ...++.|..+.+.+
T Consensus 393 ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~-------~~~r~~a~~l~~~~ 455 (481)
T PLN02554 393 KFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD-------SDVRKRVKEMSEKC 455 (481)
T ss_pred hhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHH
Confidence 99994 5789999999863 3578899999999998522 34555556665554
No 42
>PTZ00298 mevalonate kinase; Provisional
Probab=99.84 E-value=2.9e-20 Score=204.79 Aligned_cols=192 Identities=18% Similarity=0.190 Sum_probs=140.6
Q ss_pred EEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
...|||||+|||||+|++|.+++..+|+++..+.+...+.. +.+.+.+
T Consensus 12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~~~--------------------~~~~~~~------------ 59 (328)
T PTZ00298 12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKGV--------------------PGLQVVD------------ 59 (328)
T ss_pred CCCcCeeEEEEecceeecCCchhhhecccceEEEEEEccCC--------------------CCceecc------------
Confidence 45799999999999999999999999999866666543310 0111111
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCC-CCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF-EDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~-~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
+...++ . +. ..-.|.+..+...+.+..|... ..|+++.|.++||+|+|||||||++||++
T Consensus 60 --~~~~~~-----~-~~-----------~~~~n~~~~a~~~~~~~~~~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l 120 (328)
T PTZ00298 60 --QRPAVP-----G-YI-----------VEKREEQRKAHQLVLRHLNIDTSVDGLKMHLGGPLVPSSGIGASASDVVSLS 120 (328)
T ss_pred --cccccc-----c-hH-----------HHhHHHHHHHHHHHHHHHhcccCCCCeEEEEECCCCCCCCchHHHHHHHHHH
Confidence 000000 0 00 0114555555666666666532 14999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCC-ceeeeeccCCCeEEEEEeCCCCC
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPA-ELLGVVEIPSHIRFWGIDSGIRH 736 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~-~~~~~v~~~~~~~~vi~~s~~~~ 736 (838)
.|++.+++.++++++++++|+.+|+.++|.+|| +|+.++++||. +++..... +...+++++.++.+++++|++++
T Consensus 121 ~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG-~D~~~~~~Gg~---~~~~~~~g~~~~~~l~~~~~~~lvv~~~~~~~ 196 (328)
T PTZ00298 121 RALSELYQLNLTEEEVNLSAFVGEGGYHGTPSG-ADNTAATYGGL---ISYRRVNGKSVFKRIAFQQPLYLVVCSTGITA 196 (328)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCh-HHHHHHHcCCe---EEEecCCCccceeEecCCCCCeEEEEECCCch
Confidence 999999999999999999999999999999999 59999999993 44443222 22356677677889999999998
Q ss_pred cCCCCchhhH
Q 003222 737 SVGGADYGSV 746 (838)
Q Consensus 737 ~~~~~~y~~~ 746 (838)
++. ..|..+
T Consensus 197 sT~-~~~~~v 205 (328)
T PTZ00298 197 STT-KVVGDV 205 (328)
T ss_pred hHH-HHHHHH
Confidence 763 335433
No 43
>PLN02555 limonoid glucosyltransferase
Probab=99.84 E-value=1.4e-18 Score=199.00 Aligned_cols=331 Identities=16% Similarity=0.121 Sum_probs=187.5
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC-Cccccc--cc-----C---CCceeeeeeccCCCcccccccccChHH
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP-DFVFTS--EI-----Q---SPRLFIRKVLLDCGAVQADALTVDRLA 90 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~-~~~~~~--~i-----~---~~~~~~~~~~~~~g~~~~~~~~~~~~~ 90 (838)
++.++.||++|++.||+.|+.+|..|||++... ...... .+ . ...+.+... ..|+........+..
T Consensus 13 ~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~--pdglp~~~~~~~~~~- 89 (480)
T PLN02555 13 VSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFF--EDGWAEDDPRRQDLD- 89 (480)
T ss_pred ECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeC--CCCCCCCcccccCHH-
Confidence 578999999999999999999999999997753 111110 00 0 011233221 113221100000111
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHhCCcEEEEecCc------hhHHHHh---
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS------WDFIYAE--- 155 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~~~i~~~--- 155 (838)
.+...+. ........++|++ .+| ++||+|. .+|+..+|+.+|||.+.+...+ +..+...
T Consensus 90 ---~~~~~~~---~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~ 163 (480)
T PLN02555 90 ---LYLPQLE---LVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVP 163 (480)
T ss_pred ---HHHHHHH---HhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCC
Confidence 1111110 0111122333332 345 9999996 8899999999999998763221 0000000
Q ss_pred h-----------hhhccc--------------chHHHHHHHHh---hccccceEEecCCCCC-------CCCCCceeecC
Q 003222 156 Y-----------VMAAGH--------------HHRSIVWQIAE---DYSHCEFLIRLPGYCP-------MPAFRDVIDVP 200 (838)
Q Consensus 156 ~-----------~~~~~~--------------~~~~i~~~l~~---~y~~~d~ll~~~~~~~-------~p~~~~v~~ip 200 (838)
+ ++..+. ....+...+.+ ....++-++.-++... +.....+..+|
T Consensus 164 ~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v~~iG 243 (480)
T PLN02555 164 FPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPIKPVG 243 (480)
T ss_pred cccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCEEEeC
Confidence 0 000000 00011111111 1122232332222110 00111367788
Q ss_pred cccccC----C-------cChHHHHHHhCCCCCCcEEEEEcCCCCc-h----hhhHHhhCCCCcEEEEe-CC------CC
Q 003222 201 LVVRRL----H-------KSRKEVRKELGIEDDVKLLILNFGGQPA-G----WKLKEEYLPSGWKCLVC-GA------SD 257 (838)
Q Consensus 201 ~~~~~~----~-------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~----~~ll~~l~~~~~~~vv~-G~------~~ 257 (838)
|+...+ . ....++.+||+..+.+++|||||||+.. . .++...+...+..|++. .. ..
T Consensus 244 Pl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~ 323 (480)
T PLN02555 244 PLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVE 323 (480)
T ss_pred cccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccch
Confidence 864311 0 1134677888876667899999999764 1 23333454455554432 21 00
Q ss_pred C-CC--------CCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-
Q 003222 258 S-QL--------PPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY- 323 (838)
Q Consensus 258 ~-~l--------p~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~- 323 (838)
. .+ ++|+.+. .|+| ++|+| +.+||||||+||++||+++|||||++| .+.||+.|++++++.
T Consensus 324 ~~~lp~~~~~~~~~~g~v~---~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P--~~~DQ~~Na~~~~~~~ 398 (480)
T PLN02555 324 PHVLPEEFLEKAGDKGKIV---QWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFP--QWGDQVTDAVYLVDVF 398 (480)
T ss_pred hhcCChhhhhhcCCceEEE---ecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCC--CccccHHHHHHHHHHh
Confidence 0 12 3466554 5777 78865 999999999999999999999999999 899999999999876
Q ss_pred CcEEEEe-----cCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 324 QGGVEMI-----RRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 324 G~g~~l~-----~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
|+|+.+. ...++.+.+.++|++++.++ .....++-|..|.+.+
T Consensus 399 gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~-----~g~~~r~ra~~l~~~a 446 (480)
T PLN02555 399 KTGVRLCRGEAENKLITREEVAECLLEATVGE-----KAAELKQNALKWKEEA 446 (480)
T ss_pred CceEEccCCccccCcCcHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHH
Confidence 9999994 33577889999999998654 2234455555555543
No 44
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.84 E-value=2e-18 Score=198.25 Aligned_cols=339 Identities=14% Similarity=0.115 Sum_probs=191.6
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccccc-CCCceeeeeecc--CCCcccccccccChH-H
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEI-QSPRLFIRKVLL--DCGAVQADALTVDRL-A 90 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i-~~~~~~~~~~~~--~~g~~~~~~~~~~~~-~ 90 (838)
.++++ ++.++.||++|++.||+.|+.+|+.|||++..... ...... ..+.+.+..... ..++........+.. .
T Consensus 10 ~HVvl-~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~~ 88 (477)
T PLN02863 10 THVLV-FPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPPS 88 (477)
T ss_pred CEEEE-ecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcchh
Confidence 44433 57899999999999999999999999999765211 111111 011222221100 011110000000100 0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHhCCcEEEEecCc---hh---HHHHh------
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFS---WD---FIYAE------ 155 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~---~~---~i~~~------ 155 (838)
....+.. ..........++|++ .+|++||+|. .+|+..+|+.+|||.+.+...+ .. .++..
T Consensus 89 ~~~~~~~----a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~ 164 (477)
T PLN02863 89 GFPLMIH----ALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKIN 164 (477)
T ss_pred hHHHHHH----HHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccc
Confidence 0111111 111223334555655 3679999996 8999999999999998874322 00 01000
Q ss_pred -----------hhhhccc-ch-------------HHHHHHHHhhc---cccceEEecCCCC-------CC-CCC--Ccee
Q 003222 156 -----------YVMAAGH-HH-------------RSIVWQIAEDY---SHCEFLIRLPGYC-------PM-PAF--RDVI 197 (838)
Q Consensus 156 -----------~~~~~~~-~~-------------~~i~~~l~~~y---~~~d~ll~~~~~~-------~~-p~~--~~v~ 197 (838)
.++..+. .. +.....+.... ..++-++.-++.. .+ ..+ +++.
T Consensus 165 ~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~ 244 (477)
T PLN02863 165 PDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVW 244 (477)
T ss_pred ccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeE
Confidence 0010000 00 00111111111 1223122111110 00 111 3577
Q ss_pred ecCcccccC--C-----------cChHHHHHHhCCCCCCcEEEEEcCCCCch-----hhhHHhhCCCCcEEEE-eCCCC-
Q 003222 198 DVPLVVRRL--H-----------KSRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCLV-CGASD- 257 (838)
Q Consensus 198 ~ip~~~~~~--~-----------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-----~~ll~~l~~~~~~~vv-~G~~~- 257 (838)
.|||+.... . ...+++.+||+..+++++|||||||...- .++...+...++.|++ ++...
T Consensus 245 ~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~ 324 (477)
T PLN02863 245 AVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVN 324 (477)
T ss_pred EeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcc
Confidence 888874311 0 01346788998777789999999998642 2333445455554443 34211
Q ss_pred -----CCCCC---------CeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHH
Q 003222 258 -----SQLPP---------NFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM 319 (838)
Q Consensus 258 -----~~lp~---------nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~ 319 (838)
..+|+ |+.+. .|+| ++|+| +++||||||+||++||+++|||+|++| .+.||+.|+++
T Consensus 325 ~~~~~~~lp~~~~~r~~~~g~~v~---~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P--~~~DQ~~na~~ 399 (477)
T PLN02863 325 EESDYSNIPSGFEDRVAGRGLVIR---GWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWP--MAADQFVNASL 399 (477)
T ss_pred cccchhhCCHHHHHHhccCCEEec---CCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCC--ccccchhhHHH
Confidence 11444 34443 5777 79987 899999999999999999999999999 78999999999
Q ss_pred HH-HcCcEEEEecC---CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 320 LE-FYQGGVEMIRR---DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 320 l~-~~G~g~~l~~~---~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
++ +.|+|+.+... ..+.+.+.+++.+++.. ....++.|..|.+.+
T Consensus 400 v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~-------~~~~r~~a~~l~e~a 448 (477)
T PLN02863 400 LVDELKVAVRVCEGADTVPDSDELARVFMESVSE-------NQVERERAKELRRAA 448 (477)
T ss_pred HHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHH
Confidence 75 67999988532 24667888888887732 245566666666654
No 45
>PLN00164 glucosyltransferase; Provisional
Probab=99.83 E-value=1.7e-18 Score=199.45 Aligned_cols=339 Identities=12% Similarity=0.087 Sum_probs=193.5
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCC----CeEEEEeCCCCcc-----cccccC-----CCceeeeeeccCCCc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAG----HDVHVVTGAPDFV-----FTSEIQ-----SPRLFIRKVLLDCGA 78 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~G----h~V~~v~~~~~~~-----~~~~i~-----~~~~~~~~~~~~~g~ 78 (838)
|++.++++ ++.++.||++|++.||+.|..+| +.|||++...... ....+. ...+.+... ..+.
T Consensus 1 ~~~~HVVl-vPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l--p~~~ 77 (480)
T PLN00164 1 MAAPTVVL-LPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHL--PAVE 77 (480)
T ss_pred CCCCEEEE-eCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEEC--CCCC
Confidence 45556644 58899999999999999999986 7899987542110 111110 002333331 1111
Q ss_pred ccccccccChHHHHHHHHHHhhccHHHHHHHHHHHHhcC--CCcEEEECC-CchHHHHHHHhCCcEEEEecCc------h
Q 003222 79 VQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSI--KADLVVSDV-VPVACRAAADAGIRSVCVTNFS------W 149 (838)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~--kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~ 149 (838)
. +... .+.... +.... ........++|++. ++++||+|+ .+|+..+|+.+|||.+.+...+ +
T Consensus 78 ~-p~~~-e~~~~~---~~~~~----~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~ 148 (480)
T PLN00164 78 P-PTDA-AGVEEF---ISRYI----QLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALM 148 (480)
T ss_pred C-CCcc-ccHHHH---HHHHH----HhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 1 0000 011111 11111 11222334556554 459999996 8899999999999998873322 1
Q ss_pred hHH----------HHhh-----hhhc--------cc-----c---hHHHHHHHHhhccccceEEecCCCC-------CC-
Q 003222 150 DFI----------YAEY-----VMAA--------GH-----H---HRSIVWQIAEDYSHCEFLIRLPGYC-------PM- 190 (838)
Q Consensus 150 ~~i----------~~~~-----~~~~--------~~-----~---~~~i~~~l~~~y~~~d~ll~~~~~~-------~~- 190 (838)
... +... ++.. +. . +..+..+. +....++-++.-++.. .+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 149 LRLPALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHG-RRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred hhhhhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHH-HhhhhcCEEEEechHHhhHHHHHHHH
Confidence 000 0000 0000 00 0 01111111 1122233333211110 00
Q ss_pred -----C--CCCceeecCccccc---C--CcChHHHHHHhCCCCCCcEEEEEcCCCCch--h---hhHHhhCCCCcEEE-E
Q 003222 191 -----P--AFRDVIDVPLVVRR---L--HKSRKEVRKELGIEDDVKLLILNFGGQPAG--W---KLKEEYLPSGWKCL-V 252 (838)
Q Consensus 191 -----p--~~~~v~~ip~~~~~---~--~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~---~ll~~l~~~~~~~v-v 252 (838)
+ ..+.++.|||+... + ....+++.+||+..+.+++|||||||.... . ++...|...+..|+ +
T Consensus 228 ~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv 307 (480)
T PLN00164 228 DGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWV 307 (480)
T ss_pred hccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 01468888887531 1 122356889998776788999999997542 2 23334434444443 2
Q ss_pred eCC-CC-----------C-CCCCC---------eEECCCCCCHH--HHHhhcC--EEEecCChhhHHHHHHcCCcEEEEe
Q 003222 253 CGA-SD-----------S-QLPPN---------FIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 253 ~G~-~~-----------~-~lp~n---------v~~~~~~~~~p--dlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
+.. .. . .+|+| +.+ ..|+| ++|+|.+ +||||||+||++|++++|||||++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v---~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 308 LRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVW---PTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred EcCCcccccccccccchhhhCChHHHHHhcCCCeEE---eecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCC
Confidence 221 10 0 14555 333 25787 7998854 8999999999999999999999999
Q ss_pred CCCCCChHHHHHHHH-HcCcEEEEecC-----CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 307 RDYFNEEPFLRNMLE-FYQGGVEMIRR-----DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 307 ~~~~~EQ~~Na~~l~-~~G~g~~l~~~-----~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
.+.||+.|+++++ ..|+|+.+..+ .++.+.+.++|++++.+. .+ .....++-|..|.+.+.
T Consensus 385 --~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~-~~--~~~~~r~~a~~~~~~~~ 451 (480)
T PLN00164 385 --LYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGG-EE--EGRKAREKAAEMKAACR 451 (480)
T ss_pred --ccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCC-ch--hHHHHHHHHHHHHHHHH
Confidence 8999999998874 68999988532 257889999999999654 11 12346666666666543
No 46
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.83 E-value=1.6e-18 Score=197.42 Aligned_cols=336 Identities=15% Similarity=0.152 Sum_probs=186.4
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHH-CCCeEEEEeCCCCcccccccC----CCceeeeeeccCCCccccc-cccc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLIS-AGHDVHVVTGAPDFVFTSEIQ----SPRLFIRKVLLDCGAVQAD-ALTV 86 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~-~Gh~V~~v~~~~~~~~~~~i~----~~~~~~~~~~~~~g~~~~~-~~~~ 86 (838)
|++.++++ ++.++.||++|++.||+.|+. +|+.|||++...... ..... .+.+.+... ..|+.... ....
T Consensus 1 ~~~~hvv~-~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~-~~~~~~~~~~~~i~~~~i--~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLL-VTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH-RSMIPNHNNVENLSFLTF--SDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEE-ecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh-hhhhccCCCCCCEEEEEc--CCCCCCccccccc
Confidence 44445543 588999999999999999996 699999997752111 11111 113444432 12322100 0011
Q ss_pred ChHHHHHHHHHHhhccHHHHHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHhCCcEEEEecCc-hh-HHHHhh--
Q 003222 87 DRLASLEKYSETAVAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-FIYAEY-- 156 (838)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~-~~-~i~~~~-- 156 (838)
+....+..... . ......++|++ -+| ++||+|. .+|+..+|+.+|||.+.+...+ +. ..+..+
T Consensus 77 ~~~~~~~~~~~----~---~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 77 DVQNRLVNFER----N---GDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred cHHHHHHHHHH----h---ccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 11111111111 1 11122333332 134 9999996 8899999999999998874322 00 001000
Q ss_pred -------hhhccc----c----------hHHHHH---HHHhhccc--cceEEecCCCC-------CCCCCCceeecCccc
Q 003222 157 -------VMAAGH----H----------HRSIVW---QIAEDYSH--CEFLIRLPGYC-------PMPAFRDVIDVPLVV 203 (838)
Q Consensus 157 -------~~~~~~----~----------~~~i~~---~l~~~y~~--~d~ll~~~~~~-------~~p~~~~v~~ip~~~ 203 (838)
++..+. . .+.... +....... ++-++.-++.. .+.. .+++.|||+.
T Consensus 150 ~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~~v~~VGPL~ 228 (455)
T PLN02152 150 GNNSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-IEMVAVGPLL 228 (455)
T ss_pred cCCCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-CCEEEEcccC
Confidence 111000 0 000001 11111111 22233222211 0111 2577888875
Q ss_pred ccC----C---------cChHHHHHHhCCCCCCcEEEEEcCCCCc-h----hhhHHhhCCCCcEE--EEeCCC-------
Q 003222 204 RRL----H---------KSRKEVRKELGIEDDVKLLILNFGGQPA-G----WKLKEEYLPSGWKC--LVCGAS------- 256 (838)
Q Consensus 204 ~~~----~---------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~----~~ll~~l~~~~~~~--vv~G~~------- 256 (838)
... . ....++.+||+..+.+++|||||||+.. . .++...+...+..| ++-...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~ 308 (455)
T PLN02152 229 PAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIE 308 (455)
T ss_pred ccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccc
Confidence 311 0 1123578899877678999999999864 2 22333343333333 332210
Q ss_pred -C--------CC----CCCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHH
Q 003222 257 -D--------SQ----LPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM 319 (838)
Q Consensus 257 -~--------~~----lp~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~ 319 (838)
. +. .++|..+. +|+| ++|+| +.+||||||+||++|++++|||+|++| .+.||+.||++
T Consensus 309 ~~~~~~~~~~~~f~e~~~~~g~v~---~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P--~~~DQ~~na~~ 383 (455)
T PLN02152 309 GEEETEIEKIAGFRHELEEVGMIV---SWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFP--MWSDQPANAKL 383 (455)
T ss_pred cccccccccchhHHHhccCCeEEE---eeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecc--ccccchHHHHH
Confidence 0 00 23455553 5888 89988 558999999999999999999999999 79999999999
Q ss_pred HHH-cCcEEEEe--cCC-CChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 320 LEF-YQGGVEMI--RRD-LLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 320 l~~-~G~g~~l~--~~~-~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+++ .|+|+.+. ..+ ++.+.+.++|++++.++ ....++.|..|.+.+
T Consensus 384 ~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~------~~~~r~~a~~~~~~~ 433 (455)
T PLN02152 384 LEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK------SVELRESAEKWKRLA 433 (455)
T ss_pred HHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHH
Confidence 987 35555553 333 47889999999999633 123455555555543
No 47
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.83 E-value=5.7e-20 Score=187.71 Aligned_cols=187 Identities=26% Similarity=0.318 Sum_probs=140.5
Q ss_pred EEEEccccccccccccccC------CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 003222 498 FVARAPGRLDVMGGIADYS------GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~------gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (838)
++.+||-|+.+.|+-||+. ||.|++++||+++|+.+.+..|.++++. .+
T Consensus 2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d~~I~~~----------------------~~--- 56 (333)
T COG2605 2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDEIRVR----------------------YD--- 56 (333)
T ss_pred cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCCceEEEe----------------------cc---
Confidence 4667999999999999997 9999999999999999999887664422 00
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHH-HHHHhCCCCCCCEEEEEEeCCCCCCCCChHH
Q 003222 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV-LMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (838)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~-~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (838)
+ . + ..++ ++.++ ++ ..++.++.. ++...|. ..+++...+++|+|+|||||+
T Consensus 57 --~--~-~-~v~~------~~~~~-----------h~--~~~~~~l~r~~l~~~g~---~~~el~~~~D~P~GSGLGSSS 108 (333)
T COG2605 57 --R--T-E-FVKS------YLENE-----------HK--PLVVESLKRDFLEFNGG---TPIELHTQSDAPPGSGLGSSS 108 (333)
T ss_pred --h--H-H-hhhh------hHhhc-----------Cc--hHHHHHHHHHHHhhcCC---CceEEEEecCCCCCCCCCchH
Confidence 0 0 0 0011 11111 11 223443332 3322222 129999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCc-e-eeeeccC------
Q 003222 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE-L-LGVVEIP------ 722 (838)
Q Consensus 651 A~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~-~-~~~v~~~------ 722 (838)
|+.||+..|+..+-|..+++.+||+.|+.+|++..+.+.|.+||++++|||.|. +.++... + +.++.+.
T Consensus 109 a~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnf---MEf~~~~~V~v~pL~i~~e~~~E 185 (333)
T COG2605 109 AFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNF---MEFRGNGEVVVNPLRINRERTAE 185 (333)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCceE---EEEcCCCcEEEeecccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999764 4555443 2 3455553
Q ss_pred CCeEEEEEeCCCCCcCCC
Q 003222 723 SHIRFWGIDSGIRHSVGG 740 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~~~~ 740 (838)
...++++++||+.|...+
T Consensus 186 le~~~lL~yTGi~R~Ss~ 203 (333)
T COG2605 186 LEARLLLYYTGITRQSSE 203 (333)
T ss_pred HHhceEEEEeccccchhH
Confidence 256889999999998653
No 48
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.82 E-value=6.4e-18 Score=194.94 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=116.3
Q ss_pred CceeecCccccc-C---Cc----ChHHHHHHhCCCCCCcEEEEEcCCCCc-h----hhhHHhhCCCCcEEEE-eCCC-C-
Q 003222 194 RDVIDVPLVVRR-L---HK----SRKEVRKELGIEDDVKLLILNFGGQPA-G----WKLKEEYLPSGWKCLV-CGAS-D- 257 (838)
Q Consensus 194 ~~v~~ip~~~~~-~---~~----~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~----~~ll~~l~~~~~~~vv-~G~~-~- 257 (838)
++++.|||+... . .. ..+++.+|++..+.+++|||||||+.. . .++...+...++.|++ ++.. .
T Consensus 243 p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~ 322 (475)
T PLN02167 243 PPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAE 322 (475)
T ss_pred CeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCccc
Confidence 567888886531 1 11 125688899877678899999999854 2 2333344445555443 3321 1
Q ss_pred ----C-CCCCCe--------EECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHH-
Q 003222 258 ----S-QLPPNF--------IKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM- 319 (838)
Q Consensus 258 ----~-~lp~nv--------~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~- 319 (838)
. .+|+|+ .+ +.|+| ++|+| +++||||||+||++||+++|||||++| .+.||+.|+++
T Consensus 323 ~~~~~~~lp~~~~er~~~rg~v---~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P--~~~DQ~~na~~~ 397 (475)
T PLN02167 323 YASPYEPLPEGFMDRVMGRGLV---CGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP--MYAEQQLNAFTM 397 (475)
T ss_pred ccchhhhCChHHHHHhccCeee---eccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecc--ccccchhhHHHH
Confidence 0 156653 23 35888 78987 789999999999999999999999999 88999999976
Q ss_pred HHHcCcEEEEecC-------CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 320 LEFYQGGVEMIRR-------DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 320 l~~~G~g~~l~~~-------~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
++..|+|+.+... .++.+.+.++|++++.+. ...++.|..+.+.+
T Consensus 398 ~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-------~~~r~~a~~~~~~~ 449 (475)
T PLN02167 398 VKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-------DVPRKKVKEIAEAA 449 (475)
T ss_pred HHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHH
Confidence 6799999988642 357889999999998643 23444455555443
No 49
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.81 E-value=6.2e-18 Score=189.03 Aligned_cols=324 Identities=18% Similarity=0.051 Sum_probs=192.6
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
|+|++...|.| ||...++.+|++|.++||+|++++...... .......++.+..... .+.. .......+...
T Consensus 2 ~~i~i~~~g~g-G~~~~~~~la~~L~~~g~ev~vv~~~~~~~-~~~~~~~g~~~~~~~~-~~~~-----~~~~~~~l~~~ 73 (357)
T PRK00726 2 KKILLAGGGTG-GHVFPALALAEELKKRGWEVLYLGTARGME-ARLVPKAGIEFHFIPS-GGLR-----RKGSLANLKAP 73 (357)
T ss_pred cEEEEEcCcch-HhhhHHHHHHHHHHhCCCEEEEEECCCchh-hhccccCCCcEEEEec-cCcC-----CCChHHHHHHH
Confidence 56766666676 999999999999999999999998743211 1111111222222110 0100 00111111112
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHH
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~ 172 (838)
..+ ...+....+++++.+||+|+++.. ..+..+++..++|+|.+....|......+.
T Consensus 74 ~~~-----~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~--------------- 133 (357)
T PRK00726 74 FKL-----LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVPGLANKLL--------------- 133 (357)
T ss_pred HHH-----HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCccHHHHHH---------------
Confidence 111 123445567789999999998852 234556677899998763322110000000
Q ss_pred hhccccceEEecCC---CCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhH-Hh---h
Q 003222 173 EDYSHCEFLIRLPG---YCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-EE---Y 243 (838)
Q Consensus 173 ~~y~~~d~ll~~~~---~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll-~~---l 243 (838)
+..++.++.... ....+....+++.|+....... ...++.++.+++.++|++..|+.+.. ..++ +. +
T Consensus 134 --~~~~d~ii~~~~~~~~~~~~~~i~vi~n~v~~~~~~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~ 209 (357)
T PRK00726 134 --ARFAKKVATAFPGAFPEFFKPKAVVTGNPVREEILAL--AAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALL 209 (357)
T ss_pred --HHHhchheECchhhhhccCCCCEEEECCCCChHhhcc--cchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHh
Confidence 001111111000 0000111123333433221111 11223456555666777766655432 2233 22 2
Q ss_pred CCCCcEEEEeCCCCCC-------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC--CCChH
Q 003222 244 LPSGWKCLVCGASDSQ-------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEP 314 (838)
Q Consensus 244 ~~~~~~~vv~G~~~~~-------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~--~~EQ~ 314 (838)
......++++|....+ ++.+|.+.+|.++++++|+.||++|+++|.++++||+++|+|+|++|... ..||.
T Consensus 210 ~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~ 289 (357)
T PRK00726 210 PEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQT 289 (357)
T ss_pred hhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHH
Confidence 1111345567865421 22247888988888999999999999999999999999999999999632 46888
Q ss_pred HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 315 FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 315 ~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
.|++.+.+.|.|..+...+++++.+.++|+++++++..+. ....++.++++.|.+++
T Consensus 290 ~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 290 ANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEELA 355 (357)
T ss_pred HHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 9999999999999999888888999999999998754321 57788888888888764
No 50
>PLN03015 UDP-glucosyl transferase
Probab=99.81 E-value=1.7e-17 Score=188.75 Aligned_cols=341 Identities=14% Similarity=0.145 Sum_probs=191.2
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHC-CCeEEEEeCCC-C-ccc-ccccC----CCceeeeeeccCCCccccccc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA-GHDVHVVTGAP-D-FVF-TSEIQ----SPRLFIRKVLLDCGAVQADAL 84 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~-Gh~V~~v~~~~-~-~~~-~~~i~----~~~~~~~~~~~~~g~~~~~~~ 84 (838)
|.+.++++ ++.+|.||++|++.||+.|+.+ |..|||++... . ... ...+. ...+.+... ..+.. +.+
T Consensus 1 ~~~pHvvl-~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l--p~~~~--~~l 75 (470)
T PLN03015 1 MDQPHALL-VASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEI--PSVDV--DNL 75 (470)
T ss_pred CCCcEEEE-ECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEEC--CCCcc--ccC
Confidence 34445543 5889999999999999999977 89999986542 1 111 11111 012333221 11110 111
Q ss_pred -ccChHHHHHHHHHHhhccHHHHHHHHHHHHhcC--CCcEEEECC-CchHHHHHHHhCCc-EEEEecCc-hhH-HH----
Q 003222 85 -TVDRLASLEKYSETAVAPRKSILKDEVEWLNSI--KADLVVSDV-VPVACRAAADAGIR-SVCVTNFS-WDF-IY---- 153 (838)
Q Consensus 85 -~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~--kPDlVVsD~-~~~~~~aA~~lgIP-~V~is~~~-~~~-i~---- 153 (838)
..+. .....+.... ..+.....++|++. +|++||+|. .+|+..+|+.+||| .+.+...+ +.. .+
T Consensus 76 ~~~~~-~~~~~~~~~~----~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~ 150 (470)
T PLN03015 76 VEPDA-TIFTKMVVKM----RAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLP 150 (470)
T ss_pred CCCCc-cHHHHHHHHH----HhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhh
Confidence 0010 0111121111 11223335556544 689999996 88999999999999 45552211 000 00
Q ss_pred --H----h-h--------hhhccc-c---hH--------HHHHHHHh---hccccceEEecCCCC-------CCCC----
Q 003222 154 --A----E-Y--------VMAAGH-H---HR--------SIVWQIAE---DYSHCEFLIRLPGYC-------PMPA---- 192 (838)
Q Consensus 154 --~----~-~--------~~~~~~-~---~~--------~i~~~l~~---~y~~~d~ll~~~~~~-------~~p~---- 192 (838)
. . + ++..+. . .. .....+.+ ....++-++.-++.. .+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~ 230 (470)
T PLN03015 151 VLDTVVEGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMEL 230 (470)
T ss_pred hhhcccccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhccc
Confidence 0 0 0 010000 0 00 00001111 122233233212211 0000
Q ss_pred ----CCceeecCccccc--CCcChHHHHHHhCCCCCCcEEEEEcCCCCch-----hhhHHhhCCCCcEEEE-eCC-----
Q 003222 193 ----FRDVIDVPLVVRR--LHKSRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCLV-CGA----- 255 (838)
Q Consensus 193 ----~~~v~~ip~~~~~--~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-----~~ll~~l~~~~~~~vv-~G~----- 255 (838)
.++++.|||+... .....+++.+||+..+.+++|||||||...- .++...|...+..|++ ...
T Consensus 231 ~~~~~~~v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~ 310 (470)
T PLN03015 231 NRVMKVPVYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYL 310 (470)
T ss_pred ccccCCceEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccc
Confidence 1357888887532 1122346889998777789999999999752 1233344333333332 211
Q ss_pred -------C-CC-CCCCC---------eEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCCh
Q 003222 256 -------S-DS-QLPPN---------FIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEE 313 (838)
Q Consensus 256 -------~-~~-~lp~n---------v~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ 313 (838)
. .. .+|+| +.+ ..|+| ++|+| +.+||||||+||++|++++|||||++| .+.||
T Consensus 311 ~~~~~~~~~~~~~lp~~f~er~~~rGl~v---~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P--~~~DQ 385 (470)
T PLN03015 311 GASSSDDDQVSASLPEGFLDRTRGVGLVV---TQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP--LYAEQ 385 (470)
T ss_pred ccccccccchhhcCChHHHHhhccCceEE---EecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc--cccch
Confidence 0 11 25666 333 25888 78887 778999999999999999999999999 79999
Q ss_pred HHHHHHH-HHcCcEEEEec----CCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 314 PFLRNML-EFYQGGVEMIR----RDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 314 ~~Na~~l-~~~G~g~~l~~----~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+.||+++ +..|+|+.+.. ..++.+.+..+|++++... . ......++-|..|.+.+
T Consensus 386 ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~-~--eeg~~~R~ra~~lk~~a 445 (470)
T PLN03015 386 WMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEE-D--EEGQKIRAKAEEVRVSS 445 (470)
T ss_pred HHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccC-c--ccHHHHHHHHHHHHHHH
Confidence 9999998 78899999852 2467889999999998410 0 01234455556666554
No 51
>PLN02534 UDP-glycosyltransferase
Probab=99.80 E-value=5.8e-17 Score=186.06 Aligned_cols=343 Identities=13% Similarity=0.097 Sum_probs=189.6
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccC-----CCceeeeeeccC---CCcccc-ccc-
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQ-----SPRLFIRKVLLD---CGAVQA-DAL- 84 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~-----~~~~~~~~~~~~---~g~~~~-~~~- 84 (838)
.++++ ++.++.||++|++.||+.|+.+|+.|||++..... .....+. ...+.+...... .|+... ...
T Consensus 9 ~Hvv~-vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 9 LHFVL-IPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CEEEE-ECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 34433 58899999999999999999999999999765311 1111110 011333332111 132210 000
Q ss_pred ccChHHHHHHHHHHhhccHHHHHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHhCCcEEEEecCc---hhH---HHHh
Q 003222 85 TVDRLASLEKYSETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFS---WDF---IYAE 155 (838)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~---~~~---i~~~ 155 (838)
.......+..+... ...+.....++|++ .+|++||+|+ .+|+..+|+.+|||.+.+...+ ... ++..
T Consensus 88 ~~~~~~~~~~~~~~----~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 88 TLPSRDLLRKFYDA----VDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred cCCcHHHHHHHHHH----HHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 00111122222111 11223344556654 3679999996 8899999999999998874221 100 0000
Q ss_pred --h-----------hhhccc----c-------------hHHHHHHHHhhccccceEEecCCCCC-------C-CCC-Cce
Q 003222 156 --Y-----------VMAAGH----H-------------HRSIVWQIAEDYSHCEFLIRLPGYCP-------M-PAF-RDV 196 (838)
Q Consensus 156 --~-----------~~~~~~----~-------------~~~i~~~l~~~y~~~d~ll~~~~~~~-------~-p~~-~~v 196 (838)
. ++..+. . .+.+..++......++.++.-++... + ..+ +++
T Consensus 164 ~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v 243 (491)
T PLN02534 164 NAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKV 243 (491)
T ss_pred cccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcE
Confidence 0 011000 0 00111111111111222222122110 0 111 357
Q ss_pred eecCcccccCC-------------cChHHHHHHhCCCCCCcEEEEEcCCCCc--hhh---hHHhhCCCCcEEEE-eCCC-
Q 003222 197 IDVPLVVRRLH-------------KSRKEVRKELGIEDDVKLLILNFGGQPA--GWK---LKEEYLPSGWKCLV-CGAS- 256 (838)
Q Consensus 197 ~~ip~~~~~~~-------------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~---ll~~l~~~~~~~vv-~G~~- 256 (838)
..|||+..... ....++.+||+..+++++|||||||... +.+ +...|...+..|++ +...
T Consensus 244 ~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~ 323 (491)
T PLN02534 244 WCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGE 323 (491)
T ss_pred EEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 78888743100 0223577899887778999999999864 223 33334333333332 2211
Q ss_pred C-----C-CC---------CCCeEECCCCCCHH--HHHhhcCE--EEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHH
Q 003222 257 D-----S-QL---------PPNFIKLPKDAYTP--DFMAASDC--MLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLR 317 (838)
Q Consensus 257 ~-----~-~l---------p~nv~~~~~~~~~p--dlLa~adl--~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na 317 (838)
. . .+ +.|+.+ ..|+| ++|+|.++ ||||||+||++||+++|||||++| .+.||+.|+
T Consensus 324 ~~~~~~~~~~p~gf~~~~~~~g~~v---~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P--~~~dq~~na 398 (491)
T PLN02534 324 KHSELEEWLVKENFEERIKGRGLLI---KGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWP--LFAEQFLNE 398 (491)
T ss_pred cccchhhhcCchhhHHhhccCCeec---cCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecc--ccccHHHHH
Confidence 0 0 02 334444 25777 79988555 999999999999999999999999 789999999
Q ss_pred HHHH-HcCcEEEEec---------C----CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 318 NMLE-FYQGGVEMIR---------R----DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 318 ~~l~-~~G~g~~l~~---------~----~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
++++ ..|+|+.+.. + -++.+.+.++|++++... .......++-|..|.+.+
T Consensus 399 ~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~---~eeg~~~R~rA~elk~~a 463 (491)
T PLN02534 399 KLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDG---GEEGERRRRRAQELGVMA 463 (491)
T ss_pred HHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHH
Confidence 8885 7789887741 1 257788999999988520 002234455566666654
No 52
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.80 E-value=2e-17 Score=184.02 Aligned_cols=301 Identities=18% Similarity=0.093 Sum_probs=176.7
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHH
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSE 97 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 97 (838)
|++.. |...||..++..+|++|.++||+|++++...... .......++.+..... .+.. .... ...+..
T Consensus 2 ~~~~~-~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-----~~~~---~~~~~~ 70 (350)
T cd03785 2 ILIAG-GGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-ARLVPKAGIPLHTIPV-GGLR-----RKGS---LKKLKA 70 (350)
T ss_pred EEEEe-cCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hhcccccCCceEEEEe-cCcC-----CCCh---HHHHHH
Confidence 44444 4445999999999999999999999997753211 1111111122222100 0000 0000 111111
Q ss_pred HhhccHHHHHHHHHHHHhcCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhh
Q 003222 98 TAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAED 174 (838)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~ 174 (838)
++ .....+....+++++.+||+|+++.. +.+..+++..++|.+......|.... ..+ .
T Consensus 71 ~~--~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~~~~---------------~~~--~ 131 (350)
T cd03785 71 PF--KLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVPGLA---------------NRL--L 131 (350)
T ss_pred HH--HHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCCccHH---------------HHH--H
Confidence 11 01112334567789999999998752 23456778889999865332221000 000 1
Q ss_pred ccccceEEecCCCCC--C-CCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhH-H---hhCC
Q 003222 175 YSHCEFLIRLPGYCP--M-PAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-E---EYLP 245 (838)
Q Consensus 175 y~~~d~ll~~~~~~~--~-p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll-~---~l~~ 245 (838)
+..++.++....... . +....+++.|........ ...++.++.++++++|++.+|+.+.. .+++ . .+..
T Consensus 132 ~~~~~~vi~~s~~~~~~~~~~~~~~i~n~v~~~~~~~--~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~ 209 (350)
T cd03785 132 ARFADRVALSFPETAKYFPKDKAVVTGNPVREEILAL--DRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR 209 (350)
T ss_pred HHhhCEEEEcchhhhhcCCCCcEEEECCCCchHHhhh--hhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc
Confidence 111233332111100 0 111122333332211111 11156677776677777777766542 2232 2 2322
Q ss_pred CCcE-EEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC--CCChH
Q 003222 246 SGWK-CLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEP 314 (838)
Q Consensus 246 ~~~~-~vv~G~~~~~--------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~--~~EQ~ 314 (838)
.++. ++++|....+ +..||++.++.++++++|+.||++|+++|.+|++||+++|+|+|++|.+. ..+|.
T Consensus 210 ~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 210 KRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred cCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 3444 3456765321 24689999998888999999999999999999999999999999998653 46788
Q ss_pred HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 315 FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 315 ~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.|++.+.+.|.|+.++..+.+++.+.++|.++++++
T Consensus 290 ~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 290 ANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred HhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCH
Confidence 999999999999999876556789999999998754
No 53
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.79 E-value=1.2e-17 Score=195.26 Aligned_cols=184 Identities=18% Similarity=0.210 Sum_probs=129.2
Q ss_pred CCCCceeecCcccccCCc----ChHHHHHHhCCCCCCcEEEEEcCCCCc----hhh----hHHhhCCC-CcEEEEe-CCC
Q 003222 191 PAFRDVIDVPLVVRRLHK----SRKEVRKELGIEDDVKLLILNFGGQPA----GWK----LKEEYLPS-GWKCLVC-GAS 256 (838)
Q Consensus 191 p~~~~v~~ip~~~~~~~~----~~~~~r~~l~~~~~~~~Vlvs~Gs~~~----~~~----ll~~l~~~-~~~~vv~-G~~ 256 (838)
|..+++..+|++...... .+.++.+.+... ..++|||||||+.. +.+ +...+... +..|++. -..
T Consensus 242 ~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~-~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~ 320 (496)
T KOG1192|consen 242 PLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDES-RHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD 320 (496)
T ss_pred CCCCCceEECcEEecCccccccccHHHHHHHhhc-cCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 335678889887653221 456777666532 45899999999973 222 33334333 6644443 221
Q ss_pred -C----CCC----CCCeEECCCCCCHH--HHH-hh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH
Q 003222 257 -D----SQL----PPNFIKLPKDAYTP--DFM-AA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF 322 (838)
Q Consensus 257 -~----~~l----p~nv~~~~~~~~~p--dlL-a~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~ 322 (838)
. ..+ +.||... +|+| ++| +| +++||||||+||++|++++|||||++| .|+||+.||+++++
T Consensus 321 ~~~~~~~~~~~~~~~nV~~~---~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~P--lf~DQ~~Na~~i~~ 395 (496)
T KOG1192|consen 321 DSIYFPEGLPNRGRGNVVLS---KWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVP--LFGDQPLNARLLVR 395 (496)
T ss_pred cchhhhhcCCCCCcCceEEe---cCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCC--ccccchhHHHHHHh
Confidence 1 123 3467763 5888 554 33 889999999999999999999999999 89999999999999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHHhhCCCC----------ccCCCCHHHHHHHHHHHHhccCCCccCCCchhHhhH
Q 003222 323 YQGGVEMIRRDLLTGHWKPYLERAISLKPC----------YEGGINGGEVAAHILQETAIGKNYASDKLSGARRLR 388 (838)
Q Consensus 323 ~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~----------~~~~~~g~~~~a~~i~~~~~~~~~~~~r~~ga~~Lr 388 (838)
.|.+.++...+++...+..++.+++++++. +.+++..+ +.+.+|.++ +.++.++.+|+
T Consensus 396 ~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e~-------~~~~~~~~~l~ 463 (496)
T KOG1192|consen 396 HGGGGVLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQPISP-ELAVKWVEF-------VARHGGAKHLK 463 (496)
T ss_pred CCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCH-HHHHHHHHH-------HHhcCCCcccC
Confidence 999999998888766688888888876532 11455666 666777666 56677778876
No 54
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.79 E-value=8.4e-18 Score=189.82 Aligned_cols=241 Identities=19% Similarity=0.152 Sum_probs=154.7
Q ss_pred HHHHHHHhcCCCcEEEECCCc----hHHHHHHH-----hCCcEEEE-ecCc-----hhHH-HHhhhhhcccchHHHHHHH
Q 003222 108 KDEVEWLNSIKADLVVSDVVP----VACRAAAD-----AGIRSVCV-TNFS-----WDFI-YAEYVMAAGHHHRSIVWQI 171 (838)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~~~----~~~~aA~~-----lgIP~V~i-s~~~-----~~~i-~~~~~~~~~~~~~~i~~~l 171 (838)
....+++++++||+|++++++ .+..++.. .++|.+++ +++. |... ...++.. .+.+.+.+
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~----s~~~~~~l 165 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCP----SEEVAKRA 165 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEEC----CHHHHHHH
Confidence 345678999999999998754 22333332 37998754 6652 3210 0111110 12222333
Q ss_pred HhhccccceEEecCCCCCCCCCCceeecCcccc--cCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhHHhh---C
Q 003222 172 AEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVR--RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKEEY---L 244 (838)
Q Consensus 172 ~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~--~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll~~l---~ 244 (838)
.+.+...++ ..++++|+... .+...++++++.+++++++++|++.+|+.+.+ ..+++.+ +
T Consensus 166 ~~~g~~~~k-------------i~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~ 232 (382)
T PLN02605 166 LKRGLEPSQ-------------IRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSL 232 (382)
T ss_pred HHcCCCHHH-------------EEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhh
Confidence 222211111 12333443221 12234567899999988888898888877753 2333322 2
Q ss_pred ------CCCc-EEEEeCCCCC---C-----CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC
Q 003222 245 ------PSGW-KCLVCGASDS---Q-----LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 245 ------~~~~-~~vv~G~~~~---~-----lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~ 309 (838)
.++. .++++|.+.. . ...+|++++|++++|++|++||++|+++|.+|++||+++|+|+|+.+...
T Consensus 233 ~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~p 312 (382)
T PLN02605 233 YDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDCIITKAGPGTIAEALIRGLPIILNGYIP 312 (382)
T ss_pred ccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhCCEEEECCCcchHHHHHHcCCCEEEecCCC
Confidence 2334 4677887632 1 23478899999999999999999999999999999999999999998544
Q ss_pred CCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC-CCCcc---------CCCCHHHHHHHHHHHH
Q 003222 310 FNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL-KPCYE---------GGINGGEVAAHILQET 370 (838)
Q Consensus 310 ~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~-~~~~~---------~~~~g~~~~a~~i~~~ 370 (838)
.+|. .|++.+.+.|.|+.. . +++.+.++|.+++.+ +.... ..+++++++++.+.+.
T Consensus 313 gqe~-gn~~~i~~~g~g~~~--~--~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 313 GQEE-GNVPYVVDNGFGAFS--E--SPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred ccch-hhHHHHHhCCceeec--C--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3333 799999999999865 2 357888999999876 32211 4677777777777765
No 55
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.78 E-value=1.8e-17 Score=178.57 Aligned_cols=249 Identities=17% Similarity=0.194 Sum_probs=142.3
Q ss_pred cCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhcc
Q 003222 23 TGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAP 102 (838)
Q Consensus 23 ~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (838)
...|.||++||++||++|+++||+|+|++..........+...++.+... . +. .+
T Consensus 10 ~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~-------~-~~--~~--------------- 64 (279)
T TIGR03590 10 SEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYEL-------P-DE--SS--------------- 64 (279)
T ss_pred ccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEe-------c-CC--Cc---------------
Confidence 56789999999999999999999999998864332222222122222111 0 00 00
Q ss_pred HHHHHHHHHHHHhcCCCcEEEECCCchHHHH---HHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccc
Q 003222 103 RKSILKDEVEWLNSIKADLVVSDVVPVACRA---AADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179 (838)
Q Consensus 103 ~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~a---A~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d 179 (838)
+..-..+..++|++.+||+||.|++-....+ .+..+.+.+.++++.-...+.+++-..... .+. ..|..
T Consensus 65 ~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~~----~~~--~~y~~-- 136 (279)
T TIGR03590 65 RYDDALELINLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNLG----ADA--SDYQG-- 136 (279)
T ss_pred hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCCC----cCH--hHhcc--
Confidence 0001223466788899999999985332222 223466778888865111111111000000 000 01110
Q ss_pred eEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHh---CCCCCCcEEEEEcCCCCch---hhhHHhhCC--CCc-EE
Q 003222 180 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKEL---GIEDDVKLLILNFGGQPAG---WKLKEEYLP--SGW-KC 250 (838)
Q Consensus 180 ~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l---~~~~~~~~Vlvs~Gs~~~~---~~ll~~l~~--~~~-~~ 250 (838)
..|. ......|+... +.+++..+.. ....+.+.|++++||.+.. ..+++.+.. .++ ..
T Consensus 137 ---------~~~~-~~~~l~G~~Y~---~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~ 203 (279)
T TIGR03590 137 ---------LVPA-NCRLLLGPSYA---LLREEFYQLATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAESQINISIT 203 (279)
T ss_pred ---------cCcC-CCeEEecchHH---hhhHHHHHhhHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhccccCceEE
Confidence 0010 01111222100 1111221110 0001346789999988763 345555432 344 34
Q ss_pred EEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 003222 251 LVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (838)
Q Consensus 251 vv~G~~~~~---------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l 320 (838)
+++|+..+. ..+|+++.+|+++|+++|+.||++||++| +|++|++++|+|+|++|. ..+|..||+.+
T Consensus 204 vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~--~~nQ~~~a~~~ 279 (279)
T TIGR03590 204 LVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAG-STSWERCCLGLPSLAICL--AENQQSNSQQL 279 (279)
T ss_pred EEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCc-hHHHHHHHcCCCEEEEEe--cccHHHHhhhC
Confidence 577876542 24689999999999999999999999999 999999999999999995 45788898763
No 56
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.77 E-value=3.8e-17 Score=185.04 Aligned_cols=321 Identities=16% Similarity=0.103 Sum_probs=187.4
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCC---eEEEEeC---CCCcccccccC---CCceeeeeeccCCCccccccccc
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGH---DVHVVTG---APDFVFTSEIQ---SPRLFIRKVLLDCGAVQADALTV 86 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh---~V~~v~~---~~~~~~~~~i~---~~~~~~~~~~~~~g~~~~~~~~~ 86 (838)
++||+++.+.|.||...+.+|+++|.++|. +|.++-. ..+.+ ...+. ...+...+..|.. ++.. .
T Consensus 6 ~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~Y~~~~~~~p~~y~~-~y~~----~ 79 (391)
T PRK13608 6 KKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPIL-TSICKKWYINSFKYFRNMYKG-FYYS----R 79 (391)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchH-HHHHHHHHHHHHHHhHHHHHH-HHHc----C
Confidence 356667889999999999999999998864 4554411 11111 00000 0000000000000 0000 0
Q ss_pred ChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHH---HHhCCcEEEE-ecCc----hhHHH-Hhhh
Q 003222 87 DRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA---ADAGIRSVCV-TNFS----WDFIY-AEYV 157 (838)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA---~~lgIP~V~i-s~~~----~~~i~-~~~~ 157 (838)
+ ..+ ...+ ..........++|++++||+||++++....... ...++|++.+ +++. |...+ ..++
T Consensus 80 ~--~~~---~~~~--~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td~~~~~~w~~~~~d~~~ 152 (391)
T PRK13608 80 P--DKL---DKCF--YKYYGLNKLINLLIKEKPDLILLTFPTPVMSVLTEQFNINIPVATVMTDYRLHKNWITPYSTRYY 152 (391)
T ss_pred c--hhh---HHHH--HHHHHHHHHHHHHHHhCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCCcccccccCCCCEEE
Confidence 0 000 0000 000122455788999999999998765432222 2358998765 5543 32100 1111
Q ss_pred hhcccchHHHHHHHHhhccccceEEecCCCCCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch
Q 003222 158 MAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG 236 (838)
Q Consensus 158 ~~~~~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~ 236 (838)
.. .+.+.+.+.+.....++ ..++++|+.... ....+.++++.+++++++++|+++.|+.+..
T Consensus 153 v~----s~~~~~~l~~~gi~~~k-------------i~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~ 215 (391)
T PRK13608 153 VA----TKETKQDFIDVGIDPST-------------VKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVS 215 (391)
T ss_pred EC----CHHHHHHHHHcCCCHHH-------------EEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccc
Confidence 11 12222222221111111 123344432221 1223456778889887888999999988742
Q ss_pred ---hhhHHhhCC--CCcEE-EEeCCCCC---C------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCc
Q 003222 237 ---WKLKEEYLP--SGWKC-LVCGASDS---Q------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLP 301 (838)
Q Consensus 237 ---~~ll~~l~~--~~~~~-vv~G~~~~---~------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP 301 (838)
..+++.+.. +++.+ +++|.+.. . ..+||++++|+++++++|+.||++|+++|..|++||+++|+|
T Consensus 216 k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~k~gg~tl~EA~a~G~P 295 (391)
T PRK13608 216 KGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLMITKPGGITISEGLARCIP 295 (391)
T ss_pred hhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEEEeCCchHHHHHHHHhCCC
Confidence 234444322 45555 45676531 1 245899999999999999999999999998999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 302 FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 302 ~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
+|++... .++|..|+..+++.|+|+... +.+.+.++|.++++++.... ..+.+.+++++.|.+.+
T Consensus 296 vI~~~~~-pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 296 MIFLNPA-PGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLI 369 (391)
T ss_pred EEECCCC-CCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 9998422 234558999999999998754 34677888999887653321 45677888888888775
No 57
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.76 E-value=3.1e-17 Score=185.06 Aligned_cols=325 Identities=14% Similarity=0.086 Sum_probs=186.4
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCccc---ccccC---CCceeeeeeccCCCcccccccccChH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF---TSEIQ---SPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~---~~~i~---~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
++|+++..+.|.||..++.+|+++|.++||+|+++...-.... ..... ...+.+.+..+...+...... .. .
T Consensus 5 ~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-~~-~ 82 (380)
T PRK13609 5 PKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKI-YD-K 82 (380)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc-cc-h
Confidence 4677788999999999999999999999998766644211000 00000 000000000000000000000 00 0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHH---HHhCCcEEEE-ecCchh--HHHH---hhhhhc
Q 003222 90 ASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA---ADAGIRSVCV-TNFSWD--FIYA---EYVMAA 160 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA---~~lgIP~V~i-s~~~~~--~i~~---~~~~~~ 160 (838)
... . ++ .........+++++++||+||+++++.+...+ ...++|.+.+ +++... ..+. .++.
T Consensus 83 ~~~-~---~~---~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~-- 153 (380)
T PRK13609 83 KIF-S---WY---ANFGRKRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFV-- 153 (380)
T ss_pred HHH-H---HH---HHHHHHHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEE--
Confidence 000 0 10 11123455788999999999998755443322 2356998754 343311 0110 0111
Q ss_pred ccchHHHHHHHHhhccccceEEecCCCCCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch---
Q 003222 161 GHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG--- 236 (838)
Q Consensus 161 ~~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--- 236 (838)
..+.+.+.+.+.....++ ..++++|..... ....+..+++.+++++++++|+++.|+.+..
T Consensus 154 --~s~~~~~~l~~~gi~~~k-------------i~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 154 --ATDHVKKVLVDIGVPPEQ-------------VVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred --CCHHHHHHHHHcCCChhH-------------EEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCH
Confidence 012222222221111111 122334432211 1123456788889887888888888887752
Q ss_pred hhhHHhhCC-CCcEEE-EeCCCCC----------CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEE
Q 003222 237 WKLKEEYLP-SGWKCL-VCGASDS----------QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (838)
Q Consensus 237 ~~ll~~l~~-~~~~~v-v~G~~~~----------~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~ 304 (838)
..+++.+.. ++++++ ++|.+.. ..+.||++++|+++++++|++||++|+++|..|+.||+++|+|+|+
T Consensus 219 ~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~~~gg~t~~EA~a~g~PvI~ 298 (380)
T PRK13609 219 KELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALGVPVIL 298 (380)
T ss_pred HHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEeCCCchHHHHHHHhCCCEEE
Confidence 234444432 456655 4565421 1356899999998899999999999999998899999999999998
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 305 iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
... ....|..|+..+++.|+++... + ++.+.++|.++++++..+. ..+...+++++.+.+.+
T Consensus 299 ~~~-~~g~~~~n~~~~~~~G~~~~~~--~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 299 YKP-VPGQEKENAMYFERKGAAVVIR--D--DEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAEN 369 (380)
T ss_pred CCC-CCCcchHHHHHHHhCCcEEEEC--C--HHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhh
Confidence 632 2223457999999999987653 2 4688889999987653221 34567778888887764
No 58
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.73 E-value=1.5e-15 Score=168.83 Aligned_cols=301 Identities=15% Similarity=0.102 Sum_probs=168.1
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 96 (838)
+|+|.+.|. .||+.++..||++|.++||+|++++..... ........++.++..... +. ........+..+.
T Consensus 2 ~i~~~~g~~-~g~~~~~~~La~~L~~~g~eV~vv~~~~~~-~~~~~~~~g~~~~~i~~~-~~-----~~~~~~~~l~~~~ 73 (348)
T TIGR01133 2 KVVLAAGGT-GGHIFPALAVAEELIKRGVEVLWLGTKRGL-EKRLVPKAGIEFYFIPVG-GL-----RRKGSFRLIKTPL 73 (348)
T ss_pred eEEEEeCcc-HHHHhHHHHHHHHHHhCCCEEEEEeCCCcc-hhcccccCCCceEEEecc-Cc-----CCCChHHHHHHHH
Confidence 565555555 499999999999999999999999863211 111111112222221100 00 0011111111111
Q ss_pred HHhhccHHHHHHHHHHHHhcCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHh
Q 003222 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAE 173 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~ 173 (838)
.. ...+.+..+++++.+||+|+++.. ..+.++++..++|.+.+.. .+. ... ... .
T Consensus 74 ~~-----~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~---~~~-------~~~---~--- 131 (348)
T TIGR01133 74 KL-----LKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NAV---PGL-------TNK---L--- 131 (348)
T ss_pred HH-----HHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CCC---ccH-------HHH---H---
Confidence 11 113345567899999999998752 3345567788999975321 110 000 000 0
Q ss_pred hccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhH-H---hhCCCC
Q 003222 174 DYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-E---EYLPSG 247 (838)
Q Consensus 174 ~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll-~---~l~~~~ 247 (838)
.+..++.++.............+++.|+........ ..++.++++++.++|++..|+.+.. .+++ . .+...+
T Consensus 132 ~~~~~d~ii~~~~~~~~~~~~~~i~n~v~~~~~~~~--~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~ 209 (348)
T TIGR01133 132 LSRFAKKVLISFPGAKDHFEAVLVGNPVRQEIRSLP--VPRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKG 209 (348)
T ss_pred HHHHhCeeEECchhHhhcCCceEEcCCcCHHHhccc--chhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcC
Confidence 111233333221110000011344455432211111 1123466665666666665555542 1222 2 222234
Q ss_pred cEE-EEeCCCCCC--------CC-CCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC-CCChHHH
Q 003222 248 WKC-LVCGASDSQ--------LP-PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY-FNEEPFL 316 (838)
Q Consensus 248 ~~~-vv~G~~~~~--------lp-~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~-~~EQ~~N 316 (838)
+.+ +++|....+ ++ .++..+.+ .+++++|+.||++|+++|.+|+.||+++|+|+|+++.+. ..+|..|
T Consensus 210 ~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~-~~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~ 288 (348)
T TIGR01133 210 IQIVHQTGKNDLEKVKNVYQELGIEAIVTFID-ENMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYN 288 (348)
T ss_pred cEEEEECCcchHHHHHHHHhhCCceEEecCcc-cCHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhH
Confidence 544 445654211 11 12322222 268899999999999999889999999999999998643 2457789
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 317 a~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++.+++.+.|..++..+.+++.+.++|.++++++
T Consensus 289 ~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 289 AKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDP 322 (348)
T ss_pred HHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCH
Confidence 9999999999999887777889999999999765
No 59
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.68 E-value=1.5e-15 Score=171.44 Aligned_cols=300 Identities=16% Similarity=0.097 Sum_probs=170.7
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 96 (838)
+|++ +.|.-.||+.++ +|+++|++++++|.|++.....+....++ ..+.+.. ....+ ....+..+.
T Consensus 7 ki~i-~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~-~~~~~~~-------l~v~G----~~~~l~~~~ 72 (385)
T TIGR00215 7 TIAL-VAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCE-VLYSMEE-------LSVMG----LREVLGRLG 72 (385)
T ss_pred eEEE-EeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCc-cccChHH-------hhhcc----HHHHHHHHH
Confidence 4533 344447999999 99999999999999886542211111111 0011111 00000 111222232
Q ss_pred HHhhccHHHHHHHHHHHHhcCCCcEEEE-CC-Cch--HHHHHHHhCCcEEEEec---CchhHHHHhhhhhcccchHHHHH
Q 003222 97 ETAVAPRKSILKDEVEWLNSIKADLVVS-DV-VPV--ACRAAADAGIRSVCVTN---FSWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVs-D~-~~~--~~~aA~~lgIP~V~is~---~~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
.+ ...+.+..+++++++||+||. |. .+. ...+|+.+|||++.+.. ..|..--... +....+
T Consensus 73 ~~-----~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~-------l~~~~d 140 (385)
T TIGR00215 73 RL-----LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKK-------IEKATD 140 (385)
T ss_pred HH-----HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHH-------HHHHHh
Confidence 22 234556788899999999995 43 222 23477889999987622 2232000000 011111
Q ss_pred HHHhhccccceEEecCCCCCCCCCCceeecCcccccCC--cChHHHHHHhCCCCCCcEEEEEcCCCCch-hh----hHH-
Q 003222 170 QIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLH--KSRKEVRKELGIEDDVKLLILNFGGQPAG-WK----LKE- 241 (838)
Q Consensus 170 ~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~--~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~~----ll~- 241 (838)
.+.-.+.....++. .......+++.|.....+. ..+.+.++.+++++++++|++..||.+.. .+ +++
T Consensus 141 ~v~~~~~~e~~~~~-----~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a 215 (385)
T TIGR00215 141 FLLAILPFEKAFYQ-----KKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKA 215 (385)
T ss_pred HhhccCCCcHHHHH-----hcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHH
Confidence 11111100000000 0000012334444322221 34667788899888888998998988764 12 221
Q ss_pred --hhC--CCCcEEEEeC-CCC--CC-------C--CCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEE
Q 003222 242 --EYL--PSGWKCLVCG-ASD--SQ-------L--PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFV 305 (838)
Q Consensus 242 --~l~--~~~~~~vv~G-~~~--~~-------l--p~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~i 305 (838)
.+. .+++.+++.+ ... .. . ...+..+ ..+++++|++||++|+.+|..|+ |++++|+|+|++
T Consensus 216 ~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~ 292 (385)
T TIGR00215 216 AQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLI--DGDARKAMFAADAALLASGTAAL-EAALIKTPMVVG 292 (385)
T ss_pred HHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEE--CchHHHHHHhCCEEeecCCHHHH-HHHHcCCCEEEE
Confidence 221 1355554432 211 10 1 2234333 34678999999999999997776 999999999999
Q ss_pred ----eCCCCC-------ChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 306 ----RRDYFN-------EEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 306 ----P~~~~~-------EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|.+.+. .|..|++.+...++...+-.++.+++.+.+.+.++++++
T Consensus 293 yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 293 YRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred EcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 643221 255688889999999888888899999999999999776
No 60
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.67 E-value=4.9e-16 Score=168.27 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=128.4
Q ss_pred EEEcccccccccccccc-CCCe----eeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 499 VARAPGRLDVMGGIADY-SGSL----VLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy-~gg~----vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
+++|||||||+|+|+|| ++|+ +++++|+++.++.+.+++++. +++.+.
T Consensus 3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~---------------------i~~~~~------ 55 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDD---------------------IRLLKG------ 55 (293)
T ss_pred eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCc---------------------EEEeeC------
Confidence 46899999999999998 7788 999999999999998876533 333221
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCC--CCCCEEEEEEeCCCCCCCCChHHH
Q 003222 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVR--FEDSISMLVSSAVPEGKGVSSSAS 651 (838)
Q Consensus 574 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~--~~~g~~i~i~s~iP~g~GLgSSAA 651 (838)
. .++ +.. .||+..++..+.+..+.. ...|+++.|.++||.|+|||||||
T Consensus 56 ---~--~~~----------------------~~~--~nlv~~a~~~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa 106 (293)
T TIGR00154 56 ---D--FDV----------------------PLE--ENLIYRAAQLLKNFANSKIKSLDGANIEIDKNIPMGAGLGGGSS 106 (293)
T ss_pred ---C--CCC----------------------CCC--CcHHHHHHHHHHHHhcccccCCCCeEEEEeccCCCCCCcchhHH
Confidence 0 010 001 288988888877666521 226999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEe
Q 003222 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (838)
Q Consensus 652 ~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~ 731 (838)
.++|++.+++.+++.++++++++++|.++| .|-..+++||. .+. ....+...+++.+.+..+++++
T Consensus 107 ~aaa~l~al~~~~~~~l~~~~l~~la~~lg----------~Dv~~~~~gg~---~~~-~g~ge~~~~l~~~~~~~~vl~~ 172 (293)
T TIGR00154 107 DAATVLVGLNQLWQLGLSLEELAELGLTLG----------ADVPFFVSGHA---AFA-TGVGEIITPFEDPPEKWVVIAK 172 (293)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhC----------CCcceEEECCe---EEE-EecCcEEEECCCCCCcEEEEEc
Confidence 999999999999999999999999999774 37677888984 333 3333333455544567788998
Q ss_pred CCCCCcC
Q 003222 732 SGIRHSV 738 (838)
Q Consensus 732 s~~~~~~ 738 (838)
++..-++
T Consensus 173 p~~~~sT 179 (293)
T TIGR00154 173 PHVSIST 179 (293)
T ss_pred CCCCcCh
Confidence 8877654
No 61
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.67 E-value=7.9e-16 Score=166.74 Aligned_cols=170 Identities=15% Similarity=0.239 Sum_probs=129.4
Q ss_pred EEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 003222 498 FVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (838)
Q Consensus 498 ~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (838)
+.++||||||| +|+|.| |++..++.+||+++.++.+++.++.. +.+.+.
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~~---------------------~~i~~~----- 56 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKEDG---------------------IVVESN----- 56 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCCC---------------------EEEEeC-----
Confidence 56789999999 899999 99999999999999999998875432 222210
Q ss_pred CCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHH
Q 003222 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (838)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (838)
+ ... + .+|.|++..++..+.+..+.. .|+++.|.++||.|+|||||||.
T Consensus 57 --------~-~~~-------------------~-~~~~n~~~~~~~~~~~~~~~~--~~~~i~i~~~iP~~~GLGSSsa~ 105 (286)
T PRK00128 57 --------N-RYV-------------------P-NDERNLAYKAAKLLKERYNIK--QGVSITIDKNIPVAAGLAGGSSD 105 (286)
T ss_pred --------C-CCC-------------------C-CCCCcHHHHHHHHHHHhcCCC--CCeEEEEEcCCCccccchHHHHH
Confidence 0 000 0 235677777777777666643 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeC
Q 003222 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDS 732 (838)
Q Consensus 653 ~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s 732 (838)
.+|++.+++.++|.++++++++++|.++| .|..++++||. .+.+.+ .+...+++.+++..++++++
T Consensus 106 a~a~~~al~~~~~~~l~~~~l~~~a~~~g----------~dv~~~~~Gg~---~~~~~~-g~~~~~~~~~~~~~~vv~~p 171 (286)
T PRK00128 106 AAATLRGLNKLWNLGLSLEELAEIGLEIG----------SDVPFCIYGGT---ALATGR-GEKITPLKSPPSCWVVLAKP 171 (286)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHhC----------CCCCeEeeCCe---EEEecC-CcccccCCCCCCcEEEEEcC
Confidence 99999999999999999999999999875 27778889984 333322 22224555445677889988
Q ss_pred CCCCcC
Q 003222 733 GIRHSV 738 (838)
Q Consensus 733 ~~~~~~ 738 (838)
+...++
T Consensus 172 ~~~~~T 177 (286)
T PRK00128 172 DIGVST 177 (286)
T ss_pred CCCCCH
Confidence 876554
No 62
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.66 E-value=1.1e-15 Score=167.51 Aligned_cols=170 Identities=12% Similarity=0.200 Sum_probs=129.4
Q ss_pred EEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 003222 498 FVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (838)
Q Consensus 498 ~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (838)
+.++||||||| +|+|.| |+++.++.++|+++.++.++++++.. +.+.+..
T Consensus 4 ~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~~---------------------~~~~~~~---- 58 (312)
T PRK02534 4 YTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDGT---------------------IRLHCDH---- 58 (312)
T ss_pred EEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCCc---------------------EEEEECC----
Confidence 45789999999 799999 99999999999999999998875432 2222100
Q ss_pred CCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHH
Q 003222 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (838)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (838)
..+ | .+..|++..++..++++.+.+. .|++|.|.++||.|+|||||||.
T Consensus 59 ----------~~~-----~---------------~~~~n~~~~~~~~~~~~~~~~~-~~~~i~i~~~IP~~~GLGSssa~ 107 (312)
T PRK02534 59 ----------PQL-----S---------------TDDDNLIYRAAQLLRKRFPFAE-GGVDITLEKRIPIGAGLAGGSTD 107 (312)
T ss_pred ----------CCC-----C---------------CCchhHHHHHHHHHHHHhCCCC-CCeEEEEecCCCCcCCccHHHHH
Confidence 000 0 1125788888887776667643 58999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEE-e
Q 003222 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI-D 731 (838)
Q Consensus 653 ~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~-~ 731 (838)
++|++.|++.+++.++++++++++|.++|. |-.++.+||. .+.....+...+++.|.++.++++ +
T Consensus 108 ~~A~~~al~~~~~~~l~~~~l~~~a~~~g~----------dv~~~~~GG~----~~~~~~g~~~~~~~~~~~~~~vv~~~ 173 (312)
T PRK02534 108 AAAVLVGLNLLWGLGLTQPELESLAAELGS----------DVPFCIAGGT----QLCFGRGEILEPLPDLDGLGVVLAKY 173 (312)
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHhCC----------CCcEEeECCe----EEEECCCCEeEECCCCCCcEEEEEEC
Confidence 999999999999999999999999998762 4466888883 233333343356766678888886 6
Q ss_pred CCCCCc
Q 003222 732 SGIRHS 737 (838)
Q Consensus 732 s~~~~~ 737 (838)
++..-+
T Consensus 174 p~~~~~ 179 (312)
T PRK02534 174 PSLSVS 179 (312)
T ss_pred CCCCcc
Confidence 777643
No 63
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=99.65 E-value=4.6e-17 Score=127.08 Aligned_cols=50 Identities=36% Similarity=0.533 Sum_probs=41.2
Q ss_pred HHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEc
Q 003222 486 AAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI 536 (838)
Q Consensus 486 ~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~ 536 (838)
.+...||.+++ .+++||||||||||||||+||.|||+||+++|++++++|
T Consensus 3 ~F~~~fg~~p~-~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 3 EFEEFFGEEPE-VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR 52 (52)
T ss_dssp HHHHHHSS--S-EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred hHHHHhCCCCC-EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence 46678997665 599999999999999999999999999999999999986
No 64
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=6.5e-13 Score=136.36 Aligned_cols=273 Identities=17% Similarity=0.142 Sum_probs=160.1
Q ss_pred EEEEee---cCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH
Q 003222 17 VFAYYV---TGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE 93 (838)
Q Consensus 17 ~Il~~v---~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ 93 (838)
+|+|.+ ...|+||++|++.||++|.++|..++|++...- ...++ +. ++ + +..
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~---e~~~~-------~~-~~-~------f~~------- 56 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDI---EAIIH-------KV-YE-G------FKV------- 56 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccch---hhhhh-------hh-hh-h------ccc-------
Confidence 444454 345899999999999999999999999987430 11110 10 00 0 000
Q ss_pred HHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHH----HHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHH
Q 003222 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVAC----RAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~----~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
...+....+++.++|++|.|++-... .....++.+.+.+++..-.... + .+.++.
T Consensus 57 ------------~~~~~~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~--d-------~d~ivN 115 (318)
T COG3980 57 ------------LEGRGNNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK--D-------NDLIVN 115 (318)
T ss_pred ------------eeeecccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh--h-------hHhhhh
Confidence 00011225789999999999865544 3444678999998765421111 0 112222
Q ss_pred HHHhhccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhhCCC
Q 003222 170 QIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEYLPS 246 (838)
Q Consensus 170 ~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l~~~ 246 (838)
++... .+. +...|...+ ...|+...+.++.-..+|+..-.. +..-|++++||.... .+++..+.+.
T Consensus 116 ~~~~a---~~~------y~~v~~k~~-~~lGp~y~~lr~eF~~~r~~~~~r-~~r~ilI~lGGsDpk~lt~kvl~~L~~~ 184 (318)
T COG3980 116 AILNA---NDY------YGLVPNKTR-YYLGPGYAPLRPEFYALREENTER-PKRDILITLGGSDPKNLTLKVLAELEQK 184 (318)
T ss_pred hhhcc---hhh------ccccCcceE-EEecCCceeccHHHHHhHHHHhhc-chheEEEEccCCChhhhHHHHHHHhhcc
Confidence 21110 000 000111111 122221111111011222222111 344699999988764 4566666655
Q ss_pred CcEE-EEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHH
Q 003222 247 GWKC-LVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFL 316 (838)
Q Consensus 247 ~~~~-vv~G~~~~~---------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~N 316 (838)
++.+ +|+|+..+. ..+|+..+-+..+|+.+|..||+.|+.+| .|++|++..|+|.++++ ....|..-
T Consensus 185 ~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~aI~AaG-stlyEa~~lgvP~l~l~--~a~NQ~~~ 261 (318)
T COG3980 185 NVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADLAISAAG-STLYEALLLGVPSLVLP--LAENQIAT 261 (318)
T ss_pred CeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcchheeccc-hHHHHHHHhcCCceEEe--eeccHHHH
Confidence 5433 456755543 24677666667789999999999999888 89999999999999999 44566778
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 317 a~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|++++..|+...+... +........+.++.++.
T Consensus 262 a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~ 294 (318)
T COG3980 262 AKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDY 294 (318)
T ss_pred HHHHHhcCchhhccCC-CchHHHHHHHHHhhhCH
Confidence 9999999998877654 33344555555655443
No 65
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.50 E-value=6.4e-14 Score=117.17 Aligned_cols=67 Identities=39% Similarity=0.607 Sum_probs=63.7
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCC
Q 003222 633 SMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGE 701 (838)
Q Consensus 633 ~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~ 701 (838)
++.++|+||.++|||||||+.+|++.+++.+++.++++.+++++++.+|+.+ |.++| +|+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~-g~~~g-~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYI-GKPSG-IDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHC-SSSHS-HHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHc-CCCCh-hhHHHHHhCc
Confidence 5899999999999999999999999999999999999999999999999777 99998 5779999997
No 66
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.49 E-value=1.4e-12 Score=147.05 Aligned_cols=316 Identities=16% Similarity=0.121 Sum_probs=165.1
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
|+|++. .|.-.||+.++. ++++|+++++++.+++.....+....+. ..+.+.. ... ......+..+
T Consensus 2 ~ki~i~-~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----l~~-------~g~~~~~~~~ 67 (380)
T PRK00025 2 LRIAIV-AGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCE-SLFDMEE----LAV-------MGLVEVLPRL 67 (380)
T ss_pred ceEEEE-ecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCc-cccCHHH----hhh-------ccHHHHHHHH
Confidence 356443 444479999999 9999999888888776432222221111 0110000 000 0011111111
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEEC-CC-chH--HHHHHHhCCcEEEE-ecCchhHHHHhhhhhcccchHHHHHH
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSD-VV-PVA--CRAAADAGIRSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQ 170 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~~-~~~--~~aA~~lgIP~V~i-s~~~~~~i~~~~~~~~~~~~~~i~~~ 170 (838)
.. ....+....+++++++||+|++. +. ++. ..+++..+||++.+ ++..|... ... ...+..
T Consensus 68 ~~-----~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~~~-~~~-------~~~~~~- 133 (380)
T PRK00025 68 PR-----LLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWAWR-QGR-------AFKIAK- 133 (380)
T ss_pred HH-----HHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhhcC-chH-------HHHHHH-
Confidence 11 11234456788999999999864 22 233 23356789998776 33223100 000 000000
Q ss_pred HHhhccccceEEec-CCC------CCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCchh-----
Q 003222 171 IAEDYSHCEFLIRL-PGY------CPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAGW----- 237 (838)
Q Consensus 171 l~~~y~~~d~ll~~-~~~------~~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~----- 237 (838)
.++.++.. +.. ...+ ..+++.|..... ....+.++++.+++++++++|++..||.+...
T Consensus 134 ------~~d~i~~~~~~~~~~~~~~g~~--~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~ 205 (380)
T PRK00025 134 ------ATDHVLALFPFEAAFYDKLGVP--VTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLP 205 (380)
T ss_pred ------HHhhheeCCccCHHHHHhcCCC--eEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 01111110 000 0000 112233322211 12235677888888777777778778765431
Q ss_pred hhHH---hhC--CCCcEEEEeCC-CCC--C-------C-CCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCc
Q 003222 238 KLKE---EYL--PSGWKCLVCGA-SDS--Q-------L-PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLP 301 (838)
Q Consensus 238 ~ll~---~l~--~~~~~~vv~G~-~~~--~-------l-p~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP 301 (838)
.+.+ .+. .+++.+++.|. ... . . .-++.+. ...++++|+.||++|+.+|.+++ |++++|+|
T Consensus 206 ~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~aDl~v~~sG~~~l-Ea~a~G~P 282 (380)
T PRK00025 206 PFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLL--DGQKREAMAAADAALAASGTVTL-ELALLKVP 282 (380)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEE--cccHHHHHHhCCEEEECccHHHH-HHHHhCCC
Confidence 1122 122 13556665543 221 1 2 2345443 35689999999999999997666 99999999
Q ss_pred EEEEeCCCCCChHHHHHHH------------HHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc-----------C-CC
Q 003222 302 FVFVRRDYFNEEPFLRNML------------EFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE-----------G-GI 357 (838)
Q Consensus 302 ~l~iP~~~~~EQ~~Na~~l------------~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~-----------~-~~ 357 (838)
+|++|.... =+...++.+ ...+++..+..++.+++.+.+.+.++++++.... . .+
T Consensus 283 vI~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~ 361 (380)
T PRK00025 283 MVVGYKVSP-LTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELHQQLRC 361 (380)
T ss_pred EEEEEccCH-HHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC
Confidence 999974311 111233333 2233333344456677899999999998764221 1 44
Q ss_pred CHHHHHHHHHHHHh
Q 003222 358 NGGEVAAHILQETA 371 (838)
Q Consensus 358 ~g~~~~a~~i~~~~ 371 (838)
+++.++++.|.+++
T Consensus 362 ~a~~~~~~~i~~~~ 375 (380)
T PRK00025 362 GADERAAQAVLELL 375 (380)
T ss_pred CHHHHHHHHHHHHh
Confidence 56677777776654
No 67
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.48 E-value=1.5e-12 Score=146.76 Aligned_cols=209 Identities=17% Similarity=0.169 Sum_probs=139.0
Q ss_pred EEccccccccccccccC-CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 500 ARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 500 ~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
++|||||-|.||..+.- |...+-+|++.+.|+.+++..... ..+ ..+|.|.|.. +.+. .+
T Consensus 2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~-~~~--------------~~~i~v~SpQ--f~~~--~~ 62 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEV-GAW--------------KWDVRVKSPQ--FSDR--EW 62 (454)
T ss_pred cccCceEEEecceEEecCCCcEEEEEecceEEEEEeeccccc-ccC--------------cceEEEeCCC--CCCC--ce
Confidence 68999999999999887 667888899999999997754311 100 1245556532 1111 11
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHH---HhCCC---CCCCEEEEEEeCC------------
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVR---FEDSISMLVSSAV------------ 640 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~---~~g~~---~~~g~~i~i~s~i------------ 640 (838)
.+.++. +...+..... -....... ..|+..+|....+ ..+.. + .+++|.|.|+.
T Consensus 63 ~y~~~~---~~~~~~~~~~---~~~~~~~~-n~fv~~ai~~~~~y~~~~~~~~~~l-~~~~itI~sd~d~ySq~~~~~~~ 134 (454)
T TIGR01219 63 LYKISL---NHLTLQSVSA---SDSRNPFV-NPFIQYAIAAVHLYFDKESLHKLLL-QGLDITILGDNAYYSQPESLGTL 134 (454)
T ss_pred EEEEec---CCccceeecc---cccCCCCC-ChHHHHHHHHHHHHHHhcccccccc-CceEEEEEecCCcccccchhccc
Confidence 121111 0000000000 00001122 3466666655433 22222 3 58999998877
Q ss_pred -------CC--------CCCCChHHHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHHhhhcCC-CCCh
Q 003222 641 -------PE--------GKGVSSSASVEVASMSAIAAAHGLNI-------------HPRDLALLCQKVENHIVGA-PCGV 691 (838)
Q Consensus 641 -------P~--------g~GLgSSAA~~va~~~al~~l~~~~l-------------~~~ela~~a~~~E~~~~G~-~~G~ 691 (838)
+. +.|||||||+.||++.||..+++..+ +++.+.++||.+|...+|+ .||
T Consensus 135 ~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG- 213 (454)
T TIGR01219 135 APFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSG- 213 (454)
T ss_pred ccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCc-
Confidence 22 68999999999999999999999876 7899999999999999996 688
Q ss_pred hhHHHhhcCCCCeEEEEEecCC---------c------------------eeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 692 MDQMASACGEANKLLAMVCQPA---------E------------------LLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 692 mDq~a~~~G~~~~~l~~d~~~~---------~------------------~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
.|.++++||| +++..+.+. . ..+++.+|.++++++.||+.++++.
T Consensus 214 ~DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~~l~Llvgdtg~~ssT~ 285 (454)
T TIGR01219 214 FDVSAAVYGS---QRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPPLMNLFMGDPGGGSSTP 285 (454)
T ss_pred hhhhhhhcCc---eEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeeccCCCCCEEEEEcCCCCcCcH
Confidence 6999999999 356665442 0 1235667889999999999997753
No 68
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.48 E-value=2.7e-14 Score=142.08 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=94.3
Q ss_pred EEEEEcCCCCch--hh----hHHhhCCC--Cc-EEEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecC
Q 003222 225 LLILNFGGQPAG--WK----LKEEYLPS--GW-KCLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKI 287 (838)
Q Consensus 225 ~Vlvs~Gs~~~~--~~----ll~~l~~~--~~-~~vv~G~~~~~--------lp~nv~~~~~~~~~pdlLa~adl~It~g 287 (838)
+|||++||.+.+ .+ +...+... .+ .++++|..... .+.|+.+++|.++|+++|+.||++||||
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~a 80 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHA 80 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCC
Confidence 589999999874 11 11111111 12 44567876421 2368999999999999999999999999
Q ss_pred ChhhHHHHHHcCCcEEEEeCCCCC--ChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 288 GYGTVSEALAYKLPFVFVRRDYFN--EEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 288 G~~Tv~Eal~~GvP~l~iP~~~~~--EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
|.+|++|++++|+|+|++|.+... +|..|++.+++.|+++.+...+.+.+.|.+.|.+++.++.
T Consensus 81 G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 81 GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp -CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH
T ss_pred CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcH
Confidence 999999999999999999976533 8999999999999999998888878899999999887653
No 69
>PRK01123 shikimate kinase; Provisional
Probab=99.44 E-value=3.8e-12 Score=137.47 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCC-C
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGA-P 688 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~-~ 688 (838)
.|++..++..+++..+.. .|+++.+.++||.++|||||||+.+|++.|++.+++.++++++++++|.++|+..++. .
T Consensus 56 ~~~v~~~~~~~~~~~~~~--~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~ 133 (282)
T PRK01123 56 TRLIERCVELVLERFGID--YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVT 133 (282)
T ss_pred chHHHHHHHHHHHHhCCC--CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhcccccccc
Confidence 367777777777777764 5999999999999999999999999999999999999999999999999999988764 4
Q ss_pred CChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 689 ~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
.+.+|++++++||. ++.+........+++ .++.++++.++.+.++.
T Consensus 134 g~~~d~~~~~~GG~---~~~~~~~~~~~~~~~--~~~~~vv~~p~~~~~T~ 179 (282)
T PRK01123 134 GAFDDACASYFGGV---TVTDNREMKLLKRDE--VELDVLVLIPPEGAFSA 179 (282)
T ss_pred CchhHHHHHHhCCE---EEEcCCCceEEEEec--CCcEEEEEECCCCcchh
Confidence 56678899999994 444433222222333 34888998888765543
No 70
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.40 E-value=1.3e-11 Score=131.45 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcC-CCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVG-APC 689 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G-~~~ 689 (838)
|++..++..+.+..+.. .|+++.+.++||.++|||||||+.+|++.|++.+++.++++++++++|+++|+..++ ..+
T Consensus 46 n~i~~~~~~~~~~~~~~--~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~ 123 (261)
T TIGR01920 46 RLIERILTAIRSKFGIV--DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTG 123 (261)
T ss_pred HHHHHHHHHHHHhcCCC--CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 67777777777666643 699999999999999999999999999999999999999999999999999998764 457
Q ss_pred ChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCC
Q 003222 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 734 (838)
Q Consensus 690 G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~ 734 (838)
|.+|++++++||. ++.+.++....+..++| +..++++..+.
T Consensus 124 ~~~D~~~~~~gG~---~~~~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 124 AFDDAAASYLGGI---VITDNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred cHHHHHHHHhCCE---EEEeCCCceEEEecCCC-CceEEEEECCC
Confidence 7789999999994 55555444333344444 34556666555
No 71
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.39 E-value=1.7e-11 Score=138.82 Aligned_cols=321 Identities=14% Similarity=0.146 Sum_probs=172.8
Q ss_pred EeecCCCcccHHHHHHHHHHHHH--CCCeEE---EEeCCCCcccccccCCCceeeeeeccCCCcccccccc-cChHHHHH
Q 003222 20 YYVTGHGFGHATRVVEVVRNLIS--AGHDVH---VVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-VDRLASLE 93 (838)
Q Consensus 20 ~~v~g~G~GHv~r~laLA~~L~~--~Gh~V~---~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~l~ 93 (838)
+.+.|| |-=.-+++||++|++ .|++|. +++....+. ...++..+ .+.. ...| ++. ......+.
T Consensus 2 ~~sngh--ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e-~~~ip~~g-~~~~--~~sg-----g~~~~~~~~~~~ 70 (396)
T TIGR03492 2 FLSNGH--GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ-NLGIPIIG-PTKE--LPSG-----GFSYQSLRGLLR 70 (396)
T ss_pred cCCCCc--hHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh-hCCCceeC-CCCC--CCCC-----CccCCCHHHHHH
Confidence 345555 555668899999998 599999 887654321 22221101 1111 1111 111 11112222
Q ss_pred HHHHHhhccHHHHHHHHHHHHhcC--CCcEEEECCCchHHHHHHHhCCcEEEE----ecCchhH-----HHHhhhhhccc
Q 003222 94 KYSETAVAPRKSILKDEVEWLNSI--KADLVVSDVVPVACRAAADAGIRSVCV----TNFSWDF-----IYAEYVMAAGH 162 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~--kPDlVVsD~~~~~~~aA~~lgIP~V~i----s~~~~~~-----i~~~~~~~~~~ 162 (838)
.+.. ..-..+.+....++++ +||+|++.-.+.++.+|...++|++.+ +|+.|.. ..+.|..-.|.
T Consensus 71 ~~~~----gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~ 146 (396)
T TIGR03492 71 DLRA----GLVGLTLGQWRALRKWAKKGDLIVAVGDIVPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGS 146 (396)
T ss_pred HHHh----hHHHHHHHHHHHHHHHhhcCCEEEEECcHHHHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCC
Confidence 2222 1122334456678888 999999877666888999999999874 4444321 00111111111
Q ss_pred chHHH-HHHHHhhccccceEEecCCCCCCCCC----Cc--eeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCc
Q 003222 163 HHRSI-VWQIAEDYSHCEFLIRLPGYCPMPAF----RD--VIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (838)
Q Consensus 163 ~~~~i-~~~l~~~y~~~d~ll~~~~~~~~p~~----~~--v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~ 235 (838)
.+.++ .+.+...+ ++.++ .++......+ .+ +++.|....-....+ + +++++.++|++..||.+.
T Consensus 147 ~~~p~e~n~l~~~~--a~~v~-~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~~----~--~l~~~~~~lllLpGSR~a 217 (396)
T TIGR03492 147 LYLPWERWLMRSRR--CLAVF-VRDRLTARDLRRQGVRASYLGNPMMDGLEPPER----K--PLLTGRFRIALLPGSRPP 217 (396)
T ss_pred ccCHHHHHHhhchh--hCEEe-CCCHHHHHHHHHCCCeEEEeCcCHHhcCccccc----c--ccCCCCCEEEEECCCCHH
Confidence 11111 01122111 23332 1111100000 12 344444332111111 1 455567889999999876
Q ss_pred h-h----hhHH---hhCC-CCcEEE-Ee-CCCCCC----------CC--------------CCeEECCCCCCHHHHHhhc
Q 003222 236 G-W----KLKE---EYLP-SGWKCL-VC-GASDSQ----------LP--------------PNFIKLPKDAYTPDFMAAS 280 (838)
Q Consensus 236 ~-~----~ll~---~l~~-~~~~~v-v~-G~~~~~----------lp--------------~nv~~~~~~~~~pdlLa~a 280 (838)
. . .+++ .+.. ++..++ .+ |..... +. +++.+..|..+++++|+.|
T Consensus 218 e~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~A 297 (396)
T TIGR03492 218 EAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWA 297 (396)
T ss_pred HHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhC
Confidence 3 1 1222 2321 345444 33 432211 11 1355556666789999999
Q ss_pred CEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc----CcEEEEecCCCChhhHHHHHHHHhhCCCCcc--
Q 003222 281 DCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY----QGGVEMIRRDLLTGHWKPYLERAISLKPCYE-- 354 (838)
Q Consensus 281 dl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~----G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~-- 354 (838)
|++||.+|..| .|++++|+|+|++|.+ ..| .|+..+++. |.++.+...+ .+.+.+.+.++++++..+.
T Consensus 298 DlvI~rSGt~T-~E~a~lg~P~Ilip~~--~~q-~na~~~~~~~~l~g~~~~l~~~~--~~~l~~~l~~ll~d~~~~~~~ 371 (396)
T TIGR03492 298 DLGIAMAGTAT-EQAVGLGKPVIQLPGK--GPQ-FTYGFAEAQSRLLGGSVFLASKN--PEQAAQVVRQLLADPELLERC 371 (396)
T ss_pred CEEEECcCHHH-HHHHHhCCCEEEEeCC--CCH-HHHHHHHhhHhhcCCEEecCCCC--HHHHHHHHHHHHcCHHHHHHH
Confidence 99999999655 9999999999999954 346 499888774 7777765444 3788889999887653210
Q ss_pred --------CCCCHHHHHHHHHHHH
Q 003222 355 --------GGINGGEVAAHILQET 370 (838)
Q Consensus 355 --------~~~~g~~~~a~~i~~~ 370 (838)
..+++++++++.|.++
T Consensus 372 ~~~~~~~lg~~~a~~~ia~~i~~~ 395 (396)
T TIGR03492 372 RRNGQERMGPPGASARIAESILKQ 395 (396)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHh
Confidence 3456666666666543
No 72
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.32 E-value=2.3e-11 Score=130.34 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=116.6
Q ss_pred EEEEccccccccccccc------cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 003222 498 FVARAPGRLDVMGGIAD------YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~D------y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (838)
+.++||++|||++ |.- |+.-..+.++|+++..+.+.+.+++. +++.+
T Consensus 7 ~~~~apaKiNL~L-~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~---------------------~~i~~----- 59 (271)
T PRK00343 7 LDWPAPAKLNLFL-HITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGE---------------------IRLLT----- 59 (271)
T ss_pred EEEeeeeeEEEEe-ecCCcCCCCCCeeeEEEEEcccceEEEEEECCCCc---------------------EEEeC-----
Confidence 4568999999999 421 22333477899998888887765421 22221
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHH
Q 003222 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651 (838)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 651 (838)
+..+ -..|.||+..++..+.+..+.. .|+++.|.++||.|+|||||||
T Consensus 60 ---------~~~~---------------------~~~~~N~v~~a~~~l~~~~~~~--~~~~i~i~k~IP~gaGLGssSs 107 (271)
T PRK00343 60 ---------PIPG---------------------VPEEDNLIVRAARLLQKATGTP--LGADISLDKRLPMGGGLGGGSS 107 (271)
T ss_pred ---------CCCC---------------------CCCcccHHHHHHHHHHHHhCCC--CCeEEEEEcCCCCcCCCCcchH
Confidence 0000 0246899999988887666653 5999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEe
Q 003222 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (838)
Q Consensus 652 ~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~ 731 (838)
..+|++.+++++++.++++++++++|++.|- | .++.++|. ..+.. ...+...+++.| ...+++++
T Consensus 108 ~aaa~l~al~~l~~~~ls~~el~~la~~iga----------D-vp~~l~g~--~~~~~-g~g~~~~~l~~~-~~~~vl~~ 172 (271)
T PRK00343 108 DAATTLVALNRLWQLGLSRDELAELGLKLGA----------D-VPVFVRGH--AAFAE-GIGEILTPVDLP-EKWYLVVK 172 (271)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC----------C-ceEEecCC--cEEEE-ecCCEEEECCCC-CcEEEEEe
Confidence 9999999999999999999999999987753 4 22334442 22322 223333455544 34468888
Q ss_pred CCCCCcC
Q 003222 732 SGIRHSV 738 (838)
Q Consensus 732 s~~~~~~ 738 (838)
++...++
T Consensus 173 p~~~~sT 179 (271)
T PRK00343 173 PGVHIST 179 (271)
T ss_pred CCCCcCh
Confidence 8887764
No 73
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.31 E-value=3.1e-11 Score=129.91 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCC
Q 003222 609 WAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (838)
Q Consensus 609 w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~ 688 (838)
+.|++..++..+.+..|.. .|++|.+.++||.++|||||||..+|++.|+++++|.++++.+++++|..+|.
T Consensus 60 ~~n~v~~a~~~~~~~~g~~--~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~------ 131 (275)
T PRK14611 60 EENIVYKALRLFERYTGID--INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISA------ 131 (275)
T ss_pred cccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC------
Confidence 4788888887776666654 58999999999999999999999999999999999999999999999998773
Q ss_pred CChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 689 ~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
|...+++||. .+.... .+...+++.+....++++++++..++
T Consensus 132 ----D~~~~~~Gg~---~~~~~~-g~~~~~~~~~~~~~~vv~~p~~~~sT 173 (275)
T PRK14611 132 ----DAPFFLKGGF---ALGRGI-GDKLEFLEKPISREITLVYPNIKSST 173 (275)
T ss_pred ----CCCeeecCCe---EEEecc-CceeEECCcCCCcEEEEEeCCCCCCh
Confidence 5444678873 343332 22224444434456899999988875
No 74
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.26 E-value=1.9e-09 Score=125.19 Aligned_cols=308 Identities=15% Similarity=0.033 Sum_probs=161.9
Q ss_pred CceEEEEEeecCCC----cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccCh
Q 003222 13 SKHLVFAYYVTGHG----FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 13 m~~~~Il~~v~g~G----~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (838)
+++|+|++++.... .|=..+...++++|.++||+|++++...... .. . .++.+... ...... ... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~-~~-~--~g~~v~~~-~~~~~~---~~~-~- 125 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP-QE-F--HGAKVIGS-WSFPCP---FYQ-K- 125 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC-cc-c--cCceeecc-CCcCCc---cCC-C-
Confidence 67788887753221 3445788999999999999999998754211 00 0 11111100 000000 000 0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCc----hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccch
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP----VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHH 164 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~----~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~ 164 (838)
. ...+. ......+++++.+||+|++..+. .+..+++..++|+|...+..+......+.. ....
T Consensus 126 ---~--~~~~~------~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~--~~~~ 192 (465)
T PLN02871 126 ---V--PLSLA------LSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTF--SWLV 192 (465)
T ss_pred ---c--eeecc------CCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccc--hhhH
Confidence 0 00000 01123556788999999876422 234567788999886422111110000000 0000
Q ss_pred HHHHHHHHhhccccceEEecCC---------CCCCCCCCceeecCccccc--CCcChHHHHHHhCCCCCCcEEEEEcCCC
Q 003222 165 RSIVWQIAEDYSHCEFLIRLPG---------YCPMPAFRDVIDVPLVVRR--LHKSRKEVRKELGIEDDVKLLILNFGGQ 233 (838)
Q Consensus 165 ~~i~~~l~~~y~~~d~ll~~~~---------~~~~p~~~~v~~ip~~~~~--~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~ 233 (838)
..+.......+..++.++.... ....+....+++.|+.... +...+.+.++.+....+...++++.|..
T Consensus 193 ~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl 272 (465)
T PLN02871 193 KPMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRL 272 (465)
T ss_pred HHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCC
Confidence 1111111112233443332111 0000111223344443221 2223344555553222233456777887
Q ss_pred Cch--hh-hHHhhC-CCCcEEEEeCCCCCC-------CCCCeEECCCC--CCHHHHHhhcCEEEecCC----hhhHHHHH
Q 003222 234 PAG--WK-LKEEYL-PSGWKCLVCGASDSQ-------LPPNFIKLPKD--AYTPDFMAASDCMLGKIG----YGTVSEAL 296 (838)
Q Consensus 234 ~~~--~~-ll~~l~-~~~~~~vv~G~~~~~-------lp~nv~~~~~~--~~~pdlLa~adl~It~gG----~~Tv~Eal 296 (838)
+.. .+ +++.+. .+++.++++|..... ...||++++++ +.++++|+.+|+||.... ..++.|||
T Consensus 273 ~~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAm 352 (465)
T PLN02871 273 GAEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAM 352 (465)
T ss_pred chhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHH
Confidence 753 22 222221 146788888865421 13578888987 467899999999996442 34789999
Q ss_pred HcCCcEEEEeCCCCCChHHHHHHHHH---cCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 297 AYKLPFVFVRRDYFNEEPFLRNMLEF---YQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 297 ~~GvP~l~iP~~~~~EQ~~Na~~l~~---~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
++|+|+|+....+. .+.++. .+.|.+++..+ ++.+.++|.++++++.
T Consensus 353 A~G~PVI~s~~gg~------~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 353 ASGVPVVAARAGGI------PDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPE 402 (465)
T ss_pred HcCCCEEEcCCCCc------HhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHH
Confidence 99999999874332 233555 67898887766 4688999999987653
No 75
>PLN02451 homoserine kinase
Probab=99.24 E-value=6.5e-11 Score=131.91 Aligned_cols=120 Identities=22% Similarity=0.311 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+.-++..+++..|... .|++|.|.++||.|+|||||||.++|++.|++.++|.++++++++++|.++|..++|..
T Consensus 115 Nlv~~a~~~~~~~~g~~~-~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h-- 191 (370)
T PLN02451 115 NCAGIAAIATMKLLGIRS-VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGYH-- 191 (370)
T ss_pred CcHHHHHHHHHHHcCCCC-CCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCCC--
Confidence 455444566677777643 69999999999999999999999999999999999999999999999999999988852
Q ss_pred hhhHHH-hhcCCCCeEEEE-EecCCceeeeeccC--CCeEEEEEeCCCCCcC
Q 003222 691 VMDQMA-SACGEANKLLAM-VCQPAELLGVVEIP--SHIRFWGIDSGIRHSV 738 (838)
Q Consensus 691 ~mDq~a-~~~G~~~~~l~~-d~~~~~~~~~v~~~--~~~~~vi~~s~~~~~~ 738 (838)
+||++ +++||. ++. .+.+.+. .++++| .++.++++..+...++
T Consensus 192 -~Dnva~a~~GG~---v~~~~~~~~~~-~~~~~p~~~~~~~Vlv~P~~~~sT 238 (370)
T PLN02451 192 -ADNIAPALMGGF---VLIRSYEPLHL-IPLRFPSAKDLFFVLVSPDFEAPT 238 (370)
T ss_pred -ccchhHhhcCCE---EEEEecCCCeE-EEeecCCCCCeEEEEEcCCCCccH
Confidence 79986 689984 333 2333333 455554 5788899988877654
No 76
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.22 E-value=2.2e-09 Score=118.59 Aligned_cols=289 Identities=16% Similarity=0.111 Sum_probs=153.9
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHHH
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSI 106 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 106 (838)
.|+..+...++++|.++||+|++++........... ....++.. ..... ...... . ..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~--~~~~~~---------------~-~~ 71 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA--RVVPVPSV--PLPGY--PEIRLA---------------L-PP 71 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC--Cceeeccc--ccCcc--cceEec---------------c-cc
Confidence 689999999999999999999999875321111000 01111110 00000 000000 0 00
Q ss_pred HHHHHHHHhcCCCcEEEECCC----chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHH-HHhhccccceE
Q 003222 107 LKDEVEWLNSIKADLVVSDVV----PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQ-IAEDYSHCEFL 181 (838)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~----~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~-l~~~y~~~d~l 181 (838)
.......+++.+||+|+.+.. ..+..+++..++|.+..-+..|......+.. ......... ....+..++.+
T Consensus 72 ~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~i 148 (364)
T cd03814 72 RRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGL---GPLSWLAWAYLRWFHNRADRV 148 (364)
T ss_pred hhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhccc---chHhHhhHHHHHHHHHhCCEE
Confidence 112244568899999987642 2345566778999876533222211111100 001111011 11223334443
Q ss_pred EecCCCC----CCCCCCc--eeecCcccc--cCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--h-hhHH---hhCC-C
Q 003222 182 IRLPGYC----PMPAFRD--VIDVPLVVR--RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKE---EYLP-S 246 (838)
Q Consensus 182 l~~~~~~----~~p~~~~--v~~ip~~~~--~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~-~ll~---~l~~-~ 246 (838)
+...... ......+ +.+.|.... .+...+...++.++ ...+.++++.|+.... . .+++ .+.. +
T Consensus 149 ~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~ 226 (364)
T cd03814 149 LVPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRP 226 (364)
T ss_pred EeCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcC
Confidence 3211100 0000011 222222111 11222233344444 2344567788876542 2 2222 2322 3
Q ss_pred CcEEEEeCCCCCC-----CCCCeEECCCC--CCHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHH
Q 003222 247 GWKCLVCGASDSQ-----LPPNFIKLPKD--AYTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPF 315 (838)
Q Consensus 247 ~~~~vv~G~~~~~-----lp~nv~~~~~~--~~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~ 315 (838)
++.++++|..... ...||.+.++. ..++++|+.||++|..+. .+++.||+++|+|+|+.+...
T Consensus 227 ~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~------ 300 (364)
T cd03814 227 PVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG------ 300 (364)
T ss_pred CceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC------
Confidence 6788888865432 46789988864 356789999999997543 368999999999999987543
Q ss_pred HHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 316 LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 316 Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+.+.++..+.|..++..+ .+.+..+|.+++.++
T Consensus 301 ~~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~ 333 (364)
T cd03814 301 PADIVTDGENGLLVEPGD--AEAFAAALAALLADP 333 (364)
T ss_pred chhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCH
Confidence 344566678898887655 456889999998766
No 77
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=6.4e-14 Score=153.35 Aligned_cols=427 Identities=34% Similarity=0.393 Sum_probs=276.6
Q ss_pred hcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccceEEecCCCCCCCCCC
Q 003222 115 NSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFR 194 (838)
Q Consensus 115 ~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~ 194 (838)
..+...-+..|..+..+.+....++|.++++|+.|.+++..|.. ..+.+++...+.+....+. ++++.+.
T Consensus 58 ~~~sVlpmaid~~~l~~~~~~~d~~~sl~~tN~~~~f~~~~~~~------p~~~~~I~~~~~~w~ny~~----C~~~g~h 127 (489)
T KOG0631|consen 58 CGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFNPDFIYFKYPL------PSIVWQIDPDVSKWENYFY----CGMKGFH 127 (489)
T ss_pred cCceeeeEEeeeeeEEEEEEcCCCceeEEEecCCCccceeeccC------CchhcccCCCccchhhhhc----cchHHHH
Confidence 33344444444444444444566899999999999866655432 1134455444444333222 2333322
Q ss_pred ceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCCCCcEEEEeCCCCCC-CCCCeEECCCCCCH
Q 003222 195 DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDAYT 273 (838)
Q Consensus 195 ~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~~~~~~vv~G~~~~~-lp~nv~~~~~~~~~ 273 (838)
++. .++..+... ..++.++.+|++..++.+.+. ..|.+.+++..... +++|+...+..-..
T Consensus 128 ~~~-----------~~~~~~~~~----~vGl~~l~~g~vPtgsgLsSs---aa~~c~a~lA~~~~~~gpn~~~~kkd~~~ 189 (489)
T KOG0631|consen 128 EYI-----------KRKPVRFEP----PVGLSILNDGSVPTGSGLSSS---AAWLCAAALATLKLNLGPNFIISKKDLAT 189 (489)
T ss_pred HHH-----------hccccccCC----CcceEEEecCCCCCCCCcchh---HHHHHHHHHHHHHHhcCCCcccchhhhhc
Confidence 221 000111111 146778888888876444331 12333333322111 46675544332223
Q ss_pred HHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc
Q 003222 274 PDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY 353 (838)
Q Consensus 274 pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~ 353 (838)
++..++.++-+..||+.+..|+++...+.+.+. +. +.+.-+.+++....|+.+...++...++.....+..+.+ .+
T Consensus 190 i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~v~-~~--~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlR-v~ 265 (489)
T KOG0631|consen 190 ITVVAESYIGLNSGGMDQAASVLAEKGHALLVD-PY--FTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLR-VV 265 (489)
T ss_pred ceEEeecccCcCCCcHHHHHHHHHhcCceEEec-cc--CCccccccccCCCCceEEEechhhhhcchhhhhhhhhce-eE
Confidence 466678899999999999999999999999997 22 446778889999999999988987777766666655444 55
Q ss_pred cCCCCHHHHHHHHHHHHhccCCCccCCCchhHhhHHHHHhccccccCCCccccccccccccccccccccCCCCCCCCCCC
Q 003222 354 EGGINGGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGD 433 (838)
Q Consensus 354 ~~~~~g~~~~a~~i~~~~~~~~~~~~r~~ga~~Lr~a~~~~~~~q~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (838)
.....+-.-++++..+.. |+.++|+.|+. .++ .+|.||+-.+++|+. + +..+++
T Consensus 266 E~~ia~~~la~k~~~~~~------------------~~~~~~~~~~~-~~~-~i~~~~~~~~~~l~~---v---~~~~~~ 319 (489)
T KOG0631|consen 266 EGTIAAGELAAKILVELP------------------AYILRYQLQRA-WRG-DIGEGYERAEEMLGL---V---EESLKP 319 (489)
T ss_pred eeehhhHHHHHHhhcccH------------------HHHHhhhhhhc-ccc-ccchhHHHHHHHHHH---H---HhhcCc
Confidence 556666665556555541 67788999998 888 999999999998882 2 333343
Q ss_pred CccccccccceeccCCCCCCchHHHHHHHHhhccccccCCCCchHHHHHHHHHHhccCCCCCceEEEEcccccccccccc
Q 003222 434 STVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEKRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIA 513 (838)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~ 513 (838)
+ +|++++.|-+.+.|+..|++++..+....... ..-.+++++......+.+..+..+.++|+|.+ |..+
T Consensus 320 e-------~f~~ee~~~~l~~~~~~f~~~~~T~~~v~~~~--~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d--~~~~ 388 (489)
T KOG0631|consen 320 E-------GFNIEEVARALGLDTEEFLQSLLTLAAVDLQV--KKLYQRAKHVYSEALRVLQEEKLCARAPGRAD--GFLA 388 (489)
T ss_pred C-------CCCHHHHHHHhccchHHHHHHhccccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCccchh--hhHH
Confidence 3 89999999999999999999999887775443 11234566666778888888888999999999 8888
Q ss_pred ccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCceeccCCccccC-CCCc
Q 003222 514 DYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDE-GKPM 592 (838)
Q Consensus 514 Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~l~~~~~~-~~p~ 592 (838)
||. +|-+.....|.+.+..+-+.+.+||++..++... -+.++....|-...++.+ .|..+.+.. -.+.
T Consensus 389 ~~g---~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~-----gaRlTGaGwGGc~v~lvp---~d~~~~~~~~~~~~ 457 (489)
T KOG0631|consen 389 DFG---RLMNESHRSCDVLYECSCPELDQLCKIALANGGV-----GARLTGAGWGGCTVALVP---ADLVDFAVAALKEI 457 (489)
T ss_pred HHH---HHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCc-----cceeeccccccceeeecc---ccchHHHHHhhhhh
Confidence 876 7888888999999998888889999998876544 244444443321112111 121111111 2356
Q ss_pred chhhhhcccCCCCCCChhHHHHHHHHHHH
Q 003222 593 SYEKAKKYFDTNPSQKWAAYVAGTILVLM 621 (838)
Q Consensus 593 ~~~~~~~~~~~~~~~~w~~y~~g~i~~~~ 621 (838)
.|+|+..++..++...|.-|.++.+-.++
T Consensus 458 ~Y~ka~~~~~~~~~k~~~~~skp~~g~~l 486 (489)
T KOG0631|consen 458 YYEKAYPKFAQDELKKALIVSKPAAGVLL 486 (489)
T ss_pred hhccccchhhhchhhceEEEecCchhhhh
Confidence 78888777777767778777777665544
No 78
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.17 E-value=6.4e-10 Score=120.48 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCC
Q 003222 609 WAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (838)
Q Consensus 609 w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~ 688 (838)
+.|++.-++..+.+..|.. ..|+++.+.++||+|+|||||||..+|++.+++.++|.++++++++++|..+|
T Consensus 69 ~~Nlv~ka~~~~~~~~g~~-~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig------- 140 (290)
T PRK14608 69 DDNLVLRAARALRARVGPG-LPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG------- 140 (290)
T ss_pred CCcHHHHHHHHHHHHhCCC-CCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-------
Confidence 5788877777777666532 25899999999999999999999999999999999999999999999999764
Q ss_pred CChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 689 ~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
.|-..+++||. .+. ....+...+++.+.++.+++++++...++
T Consensus 141 ---~dv~~~l~gg~---~~~-~g~g~~~~~l~~~~~~~~vv~~p~~~~sT 183 (290)
T PRK14608 141 ---ADVPVCLDSRP---LIM-RGIGEELTPLPGLPSLPAVLVNPGVPVAT 183 (290)
T ss_pred ---CCcchhhcCCe---EEE-EecCCEeEECCCCCCcEEEEECCCCCcCh
Confidence 37778899984 332 22333335554335677899998888764
No 79
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.17 E-value=3.8e-09 Score=118.09 Aligned_cols=131 Identities=13% Similarity=0.120 Sum_probs=90.0
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hCC-CCcEEEEeCCCCCC-----------CCCCeEECCCCCC
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YLP-SGWKCLVCGASDSQ-----------LPPNFIKLPKDAY 272 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~~-~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~ 272 (838)
...++.++.+.+ +.+++++|..... ..+++. +.. .++.++++|..... +.++|+++++.+.
T Consensus 185 ~~~~~~~~~~~~-~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~ 263 (371)
T cd04962 185 EALKRRLGAPEG-EKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDH 263 (371)
T ss_pred HHHHHhcCCCCC-CeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCccc
Confidence 345566776544 4567777776542 223332 222 35677888865421 3568999998888
Q ss_pred HHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 273 TPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 273 ~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
++++|+.||++|.- +...++.||+++|+|+|+.+... .++.+++...|..++..+ .+.+..+|.++++
T Consensus 264 ~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~------~~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~ 335 (371)
T cd04962 264 VEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGG------IPEVVKHGETGFLVDVGD--VEAMAEYALSLLE 335 (371)
T ss_pred HHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCC------chhhhcCCCceEEcCCCC--HHHHHHHHHHHHh
Confidence 99999999999953 33469999999999999986433 334466656787777655 4678889988887
Q ss_pred CC
Q 003222 349 LK 350 (838)
Q Consensus 349 ~~ 350 (838)
++
T Consensus 336 ~~ 337 (371)
T cd04962 336 DD 337 (371)
T ss_pred CH
Confidence 65
No 80
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.14 E-value=7.4e-10 Score=117.74 Aligned_cols=120 Identities=22% Similarity=0.353 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCCh
Q 003222 612 YVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGV 691 (838)
Q Consensus 612 y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~ 691 (838)
.+--++..++++.|.+. ++++.++++||.|+|||||||.+||.+.|++++++.+++++++.+++-..|.+
T Consensus 60 ~~~~~~~~~~~~~~~~~--~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgH-------- 129 (299)
T COG0083 60 LVYQAALKFLEALGIEA--GVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGH-------- 129 (299)
T ss_pred eHHHHHHHHHHHhCCCc--cEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC--------
Confidence 34444566777888764 49999999999999999999999999999999999999999999999999963
Q ss_pred hhHH-HhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEE------eCCCCCcCCCCchh
Q 003222 692 MDQM-ASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI------DSGIRHSVGGADYG 744 (838)
Q Consensus 692 mDq~-a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~------~s~~~~~~~~~~y~ 744 (838)
-||. +|++||. .+....+.-...+++++.++.++++ .|...|..++.+|.
T Consensus 130 pDNVapa~lGG~---~l~~~~~~~~~~~v~~~~~~~~v~~iP~~e~sT~~aR~vLP~~~~ 186 (299)
T COG0083 130 PDNVAPAVLGGL---VLVEEESGIISVKVPFPSDLKLVVVIPNFEVSTAEARKVLPKSYS 186 (299)
T ss_pred CchHHHHhhCCE---EEEeecCCceEEEccCCcceEEEEEeCCccccHHHHHHhccccCC
Confidence 4887 6899993 2222212212246677778887775 46666777777664
No 81
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.09 E-value=2.9e-08 Score=113.60 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=79.8
Q ss_pred CCCcEEEEEcCCCCch---hhhHHh---hC--------CCCcEEEEeCCCCCC---------CC-CCeEEC-CCC--CCH
Q 003222 221 DDVKLLILNFGGQPAG---WKLKEE---YL--------PSGWKCLVCGASDSQ---------LP-PNFIKL-PKD--AYT 273 (838)
Q Consensus 221 ~~~~~Vlvs~Gs~~~~---~~ll~~---l~--------~~~~~~vv~G~~~~~---------lp-~nv~~~-~~~--~~~ 273 (838)
++++.++++.|..... ..++++ +. .+++.++++|..... +. +|+.++ ++. +.+
T Consensus 229 ~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~ 308 (415)
T cd03816 229 EERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDY 308 (415)
T ss_pred CCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHH
Confidence 3556677777876642 223332 21 135788888865421 11 466644 454 467
Q ss_pred HHHHhhcCEEEe----cCC---hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 274 PDFMAASDCMLG----KIG---YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 274 pdlLa~adl~It----~gG---~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
|++|+.||++|. ..| .+++.|||++|+|+|+.... ...+.+++.+.|+.+. +++.+.++|.++
T Consensus 309 ~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~------~~~eiv~~~~~G~lv~----d~~~la~~i~~l 378 (415)
T cd03816 309 PKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK------CIDELVKHGENGLVFG----DSEELAEQLIDL 378 (415)
T ss_pred HHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC------CHHHHhcCCCCEEEEC----CHHHHHHHHHHH
Confidence 899999999994 112 34799999999999997632 2445677777898873 367899999999
Q ss_pred hhC
Q 003222 347 ISL 349 (838)
Q Consensus 347 l~~ 349 (838)
+++
T Consensus 379 l~~ 381 (415)
T cd03816 379 LSN 381 (415)
T ss_pred Hhc
Confidence 987
No 82
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.08 E-value=2.3e-08 Score=111.13 Aligned_cols=134 Identities=23% Similarity=0.196 Sum_probs=88.8
Q ss_pred ChHHHHHHhCCCCCCcEEEEEcCCCC---ch-hhhHHh---hCC---CCcEEEEeCCCCCC----CCCCeEECCCCCC--
Q 003222 209 SRKEVRKELGIEDDVKLLILNFGGQP---AG-WKLKEE---YLP---SGWKCLVCGASDSQ----LPPNFIKLPKDAY-- 272 (838)
Q Consensus 209 ~~~~~r~~l~~~~~~~~Vlvs~Gs~~---~~-~~ll~~---l~~---~~~~~vv~G~~~~~----lp~nv~~~~~~~~-- 272 (838)
.++..++.++.++++.++++...+.. .+ ..+++. +.. +++.++++|..... +..++..+++..+
T Consensus 177 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~~~~~~v~~~g~~~~~~ 256 (365)
T cd03825 177 DKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPPDLPFPVHYLGSLNDDE 256 (365)
T ss_pred cHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhccCCCceEecCCcCCHH
Confidence 34566777887766655544333322 12 223332 322 45677888876532 4567888888763
Q ss_pred -HHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 273 -TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 273 -~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
++.+|+.||++|... ..+++.||+++|+|+|+.......|. +...+.|..++..+ .+.+..+|.+++
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~------~~~~~~g~~~~~~~--~~~~~~~l~~l~ 328 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDI------VDHGVTGYLAKPGD--PEDLAEGIEWLL 328 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhh------eeCCCceEEeCCCC--HHHHHHHHHHHH
Confidence 568899999999853 34789999999999999875444433 44445777776554 468889999998
Q ss_pred hCC
Q 003222 348 SLK 350 (838)
Q Consensus 348 ~~~ 350 (838)
+++
T Consensus 329 ~~~ 331 (365)
T cd03825 329 ADP 331 (365)
T ss_pred hCH
Confidence 765
No 83
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.08 E-value=3.2e-08 Score=109.20 Aligned_cols=296 Identities=20% Similarity=0.175 Sum_probs=155.9
Q ss_pred CCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccH
Q 003222 24 GHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPR 103 (838)
Q Consensus 24 g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (838)
....|+..++..++++|.++||+|++++........... ...... ... .. . ........+ .
T Consensus 11 p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~---~~~~~~--~~~-------~~-~---~~~~~~~~~--~- 71 (374)
T cd03817 11 PQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEE---VVVVRP--FRV-------PT-F---KYPDFRLPL--P- 71 (374)
T ss_pred CCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccc---cccccc--ccc-------cc-c---hhhhhhccc--c-
Confidence 345699999999999999999999999875321111100 000000 000 00 0 000000000 0
Q ss_pred HHHHHHHHHHHhcCCCcEEEECCCc----hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHH--HHHhhccc
Q 003222 104 KSILKDEVEWLNSIKADLVVSDVVP----VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW--QIAEDYSH 177 (838)
Q Consensus 104 ~~~l~~~~~~L~~~kPDlVVsD~~~----~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~--~l~~~y~~ 177 (838)
........+++.+||+|+...++ .+..+++..++|.+...+..|... ..+............. .....+..
T Consensus 72 --~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (374)
T cd03817 72 --IPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDY-THYVPLGRLLARAVVRRKLSRRFYNR 148 (374)
T ss_pred --HHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHH-HHHHhcccchhHHHHHHHHHHHHhhh
Confidence 11222345788999999987533 234456678999876543332211 1111110000011111 11122334
Q ss_pred cceEEecCCCC-------CCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHH---hh
Q 003222 178 CEFLIRLPGYC-------PMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKE---EY 243 (838)
Q Consensus 178 ~d~ll~~~~~~-------~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~---~l 243 (838)
++.++...... ..+....+.+.|..... ....+...++.++.. +++.+++..|+.... ..+++ .+
T Consensus 149 ~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~~~~~~ 227 (374)
T cd03817 149 CDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIP-EDEPVLLYVGRLAKEKNIDFLIRAFARL 227 (374)
T ss_pred CCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCC-CCCeEEEEEeeeecccCHHHHHHHHHHH
Confidence 45444321100 00110112222221111 112223334555554 445667777876542 22333 22
Q ss_pred CC--CCcEEEEeCCCCC-----------CCCCCeEECCCCC--CHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEE
Q 003222 244 LP--SGWKCLVCGASDS-----------QLPPNFIKLPKDA--YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVF 304 (838)
Q Consensus 244 ~~--~~~~~vv~G~~~~-----------~lp~nv~~~~~~~--~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~ 304 (838)
.. +++.++++|.... .+.+||.++++.+ .++++|+.||++|..+ ..+++.||+++|+|+|+
T Consensus 228 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~ 307 (374)
T cd03817 228 LKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVA 307 (374)
T ss_pred HHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEE
Confidence 22 5577888886542 1467899888873 5678999999999543 34689999999999999
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 305 iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
.+... .++.++..+.|..++..+. .+.++|.++++++.
T Consensus 308 ~~~~~------~~~~i~~~~~g~~~~~~~~---~~~~~i~~l~~~~~ 345 (374)
T cd03817 308 VDAPG------LPDLVADGENGFLFPPGDE---ALAEALLRLLQDPE 345 (374)
T ss_pred eCCCC------hhhheecCceeEEeCCCCH---HHHHHHHHHHhChH
Confidence 87432 3445666678888876543 78889999988763
No 84
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.07 E-value=1.3e-09 Score=119.11 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|.+..++..+++..|... .|++|.+.++||.|+|||||||..+|++.|++.+++.++++++++++|.++|.+
T Consensus 60 ~Nlv~~a~~~~~~~~g~~~-~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~h------ 132 (302)
T TIGR00191 60 DNLIYQVAKRFLDQLGIRM-PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEGH------ 132 (302)
T ss_pred cccHHHHHHHHHHHcCCCC-CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcCC------
Confidence 3566666677777777643 589999999999999999999999999999999999999999999999999952
Q ss_pred ChhhHH-HhhcCCCCeEEEEEecCCceeeeeccC--CCeEEEEEeCCCCCcC
Q 003222 690 GVMDQM-ASACGEANKLLAMVCQPAELLGVVEIP--SHIRFWGIDSGIRHSV 738 (838)
Q Consensus 690 G~mDq~-a~~~G~~~~~l~~d~~~~~~~~~v~~~--~~~~~vi~~s~~~~~~ 738 (838)
.|+. ++.+||. .+...+.... ..++++ +++.+++++++..-++
T Consensus 133 --~Dnv~~~l~GG~---~~~~~~~~~~-~~~~~~~~~~~~~vl~~p~~~~sT 178 (302)
T TIGR00191 133 --PDNVAPALLGGF---QLAFVEDDKL-EVLKIPIFSKLDWVLAIPNIEVST 178 (302)
T ss_pred --cccHHHHhccCE---EEEEEcCCce-EEEEeCCCCCEEEEEEECCCcccH
Confidence 5765 5789994 3333233222 344433 6788899988876543
No 85
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.04 E-value=7.7e-08 Score=105.22 Aligned_cols=121 Identities=18% Similarity=0.084 Sum_probs=85.9
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhC--CCCcEEEEeCCCCCC------------CCCCeEECCCCCCHHHHHhhcC
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYL--PSGWKCLVCGASDSQ------------LPPNFIKLPKDAYTPDFMAASD 281 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~--~~~~~~vv~G~~~~~------------lp~nv~~~~~~~~~pdlLa~ad 281 (838)
+.+.++++.|+.... ..+++ .+. .+++.++++|..... ...+|.+.++.+.+.++|+.||
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 265 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAAD 265 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhcc
Confidence 345677888876542 12222 232 356788888876431 2457888888778889999999
Q ss_pred EEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 282 CMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 282 l~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++|..+. .+++.||+++|+|+|+.+.... .+.+++.+.|..++..+ ++.+.++|.+++.++
T Consensus 266 i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~------~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~ 330 (359)
T cd03808 266 VFVLPSYREGLPRVLLEAMAMGRPVIATDVPGC------REAVIDGVNGFLVPPGD--AEALADAIERLIEDP 330 (359)
T ss_pred EEEecCcccCcchHHHHHHHcCCCEEEecCCCc------hhhhhcCcceEEECCCC--HHHHHHHHHHHHhCH
Confidence 9997542 4689999999999999875433 33466677888887655 468889999988765
No 86
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.04 E-value=5.4e-09 Score=113.32 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|.+..++..+.+..+. ..|++|.|.++||.++|||||||..+|++.+++.++|.++++++++++|.+.|.
T Consensus 64 ~nl~~~a~~~~~~~~~~--~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~------- 134 (287)
T PRK14616 64 SNLCIRAAKALQEYAGV--SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGA------- 134 (287)
T ss_pred cHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-------
Confidence 45555555666666665 369999999999999999999999999999999999999999999999998764
Q ss_pred ChhhHHHhh-cCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 690 GVMDQMASA-CGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 690 G~mDq~a~~-~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
|--+++ +||. . +.....+..++++.+..+.+++++.+..-++
T Consensus 135 ---Dvp~~l~~gg~---~-~~~g~g~~~~~~~~~~~~~~vvv~P~~~vsT 177 (287)
T PRK14616 135 ---DVPYFLEMKGL---A-YATGIGDELEDLQLTLPFHIVTVFPEEHIST 177 (287)
T ss_pred ---CcceEeccCCc---E-EEEEcCceeEECCcCCCcEEEEECCCCCcCH
Confidence 311122 3552 1 2222233223444433466888887766544
No 87
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.04 E-value=8.2e-08 Score=106.31 Aligned_cols=121 Identities=18% Similarity=0.122 Sum_probs=81.9
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC-CCcEEEEeCCCCCC----------CCCCeEECCCCC--CHHHHHhhcCE
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP-SGWKCLVCGASDSQ----------LPPNFIKLPKDA--YTPDFMAASDC 282 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~-~~~~~vv~G~~~~~----------lp~nv~~~~~~~--~~pdlLa~adl 282 (838)
+.+.++++.|+.... ..+++ .+.. +++.++++|..... ..+|+.++++.+ .+.++|..||+
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di 297 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV 297 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe
Confidence 455677888877643 22233 2322 36778888865421 247898888763 46689999999
Q ss_pred EEecCC---------hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 283 MLGKIG---------YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 283 ~It~gG---------~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+|.... .+++.||+++|+|+|+.+.....| .+...+.|..++..+ .+.+.++|.+++.++
T Consensus 298 ~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~------~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 366 (394)
T cd03794 298 GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE------LVEEAGAGLVVPPGD--PEALAAAILELLDDP 366 (394)
T ss_pred eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh------hhccCCcceEeCCCC--HHHHHHHHHHHHhCh
Confidence 995322 234799999999999998554333 344447788887655 468899999998765
No 88
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.03 E-value=6.6e-08 Score=107.18 Aligned_cols=129 Identities=20% Similarity=0.253 Sum_probs=86.9
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCC
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDA 271 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~~--~~~~~vv~G~~~~~-----------lp~nv~~~~~~~ 271 (838)
..+++.++++++ +.++++.|+.... ..+++. +.. +++.++++|..... +.+||.++++..
T Consensus 176 ~~~~~~~~~~~~-~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~ 254 (360)
T cd04951 176 LKIRNALGVKND-TFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRD 254 (360)
T ss_pred HHHHHHcCcCCC-CEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccc
Confidence 356677777544 4566777766542 223332 222 46788888865421 357899999888
Q ss_pred CHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 272 YTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 272 ~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
+++++|+.||++|.... .+++.||+++|+|+|+..... +.+.++. .|..+...+ .+.+.++|.+++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~------~~e~i~~--~g~~~~~~~--~~~~~~~i~~ll 324 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGG------VREVVGD--SGLIVPISD--PEALANKIDEIL 324 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCC------hhhEecC--CceEeCCCC--HHHHHHHHHHHH
Confidence 89999999999997543 468999999999999876432 3334544 355555544 468899999998
Q ss_pred hCC
Q 003222 348 SLK 350 (838)
Q Consensus 348 ~~~ 350 (838)
++.
T Consensus 325 ~~~ 327 (360)
T cd04951 325 KMS 327 (360)
T ss_pred hCC
Confidence 543
No 89
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.03 E-value=7.9e-08 Score=104.65 Aligned_cols=121 Identities=17% Similarity=0.103 Sum_probs=83.1
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCE
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDC 282 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl 282 (838)
..+.++++.|+.... ..+++ .+. .+++.++++|..... ++.++.+.++.+.++++|+.||+
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 255 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASI 255 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE
Confidence 334566777766542 12233 232 356778888865421 35678888887788999999999
Q ss_pred EEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcC-cEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 283 MLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ-GGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 283 ~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G-~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+|.... .+++.||+++|+|+|+.+.....+ .+...+ .|..++..+ .+.+.++|.++++++
T Consensus 256 ~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~------~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~ 320 (348)
T cd03820 256 FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS------EIIEDGVNGLLVPNGD--VEALAEALLRLMEDE 320 (348)
T ss_pred EEeCccccccCHHHHHHHHcCCCEEEecCCCchH------hhhccCcceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 997542 368999999999999976432222 244444 788887655 468999999998766
No 90
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.02 E-value=1.9e-07 Score=102.38 Aligned_cols=307 Identities=17% Similarity=0.151 Sum_probs=161.7
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
|+|++-+..+ -|+.....++++|.++||+|.+.+.... .....+..-++.+..+ |-. .... ..++
T Consensus 1 MkIwiDi~~p--~hvhfFk~~I~eL~~~GheV~it~R~~~-~~~~LL~~yg~~y~~i----G~~-----g~~~---~~Kl 65 (335)
T PF04007_consen 1 MKIWIDITHP--AHVHFFKNIIRELEKRGHEVLITARDKD-ETEELLDLYGIDYIVI----GKH-----GDSL---YGKL 65 (335)
T ss_pred CeEEEECCCc--hHHHHHHHHHHHHHhCCCEEEEEEeccc-hHHHHHHHcCCCeEEE----cCC-----CCCH---HHHH
Confidence 4565566555 5999999999999999999999876431 1111121112333332 111 1111 1112
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhc
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDY 175 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y 175 (838)
... .....+..+++++++||++|+-..+.+..+|..+|+|+|.+.|..+........ +
T Consensus 66 ~~~-----~~R~~~l~~~~~~~~pDv~is~~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt-----------------~ 123 (335)
T PF04007_consen 66 LES-----IERQYKLLKLIKKFKPDVAISFGSPEAARVAFGLGIPSIVFNDTEHAIAQNRLT-----------------L 123 (335)
T ss_pred HHH-----HHHHHHHHHHHHhhCCCEEEecCcHHHHHHHHHhCCCeEEEecCchhhccceee-----------------h
Confidence 221 112344577788999999999988888989999999999986643210000000 0
Q ss_pred cccceEEecCCCCCCC---CC---CceeecCccc-----ccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--------
Q 003222 176 SHCEFLIRLPGYCPMP---AF---RDVIDVPLVV-----RRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-------- 236 (838)
Q Consensus 176 ~~~d~ll~~~~~~~~p---~~---~~v~~ip~~~-----~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-------- 236 (838)
.-++.++. |...+.. .+ .+++..+... .+.+++ +++.+.+|++ +.++|++=+-+..+.
T Consensus 124 Pla~~i~~-P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~Pd-~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i 200 (335)
T PF04007_consen 124 PLADVIIT-PEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFKPD-PEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSI 200 (335)
T ss_pred hcCCeeEC-CcccCHHHHHhcCCcCCEEEECCeeeEEeecCCCCC-hhHHHHcCCC-CCCEEEEEeccccCeeecCccch
Confidence 00111111 1100000 00 0122111111 112333 3567789976 678888877665441
Q ss_pred -hhhHHhhCCCCcEEEEeCCCCCC--CCC--CeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCC
Q 003222 237 -WKLKEEYLPSGWKCLVCGASDSQ--LPP--NFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFN 311 (838)
Q Consensus 237 -~~ll~~l~~~~~~~vv~G~~~~~--lp~--nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~ 311 (838)
.++++.+...+..+++..+..++ +-+ ++.+.+..-+..++|..||++||-|| ++..||+.+|+|+|.+- .+
T Consensus 201 ~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~~i~~~~vd~~~Ll~~a~l~Ig~gg-TMa~EAA~LGtPaIs~~---~g 276 (335)
T PF04007_consen 201 LPEIIEELEKYGRNVVIIPRYEDQRELFEKYGVIIPPEPVDGLDLLYYADLVIGGGG-TMAREAALLGTPAISCF---PG 276 (335)
T ss_pred HHHHHHHHHhhCceEEEecCCcchhhHHhccCccccCCCCCHHHHHHhcCEEEeCCc-HHHHHHHHhCCCEEEec---CC
Confidence 13333443333323333322222 111 23333221133489999999999655 88999999999999863 12
Q ss_pred ChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc--CCCCHHHHHHHHHHHH
Q 003222 312 EEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE--GGINGGEVAAHILQET 370 (838)
Q Consensus 312 EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~--~~~~g~~~~a~~i~~~ 370 (838)
+....-++|.+.|. +....+ ++.+...+.+.+..+.... ...+-.+.+.+.|+++
T Consensus 277 ~~~~vd~~L~~~Gl--l~~~~~--~~ei~~~v~~~~~~~~~~~~~~~~d~~~~i~~~i~~~ 333 (335)
T PF04007_consen 277 KLLAVDKYLIEKGL--LYHSTD--PDEIVEYVRKNLGKRKKIREKKSEDPTDLIIEEIEEY 333 (335)
T ss_pred cchhHHHHHHHCCC--eEecCC--HHHHHHHHHHhhhcccchhhhhccCHHHHHHHHHHHh
Confidence 32234467888876 344334 3455556655554332221 1244455555555554
No 91
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.02 E-value=4.2e-08 Score=110.26 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=157.2
Q ss_pred EEEEEeecCCCcccH-HHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHA-TRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv-~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 94 (838)
.+|++++.+.+.|.+ +-...++++|.++|+++++++......+...+...++.+.... .. ... .
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~------~~---~~~------~ 66 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALH------KQ---PGK------D 66 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeC------CC---CCC------C
Confidence 567777877776666 5556999999999999988874322122221111122222210 00 000 0
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEEECC--CchHHHHHHHhCCcEEEEecCchhHHH-HhhhhhcccchHHHHHHH
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVVSDV--VPVACRAAADAGIRSVCVTNFSWDFIY-AEYVMAAGHHHRSIVWQI 171 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~--~~~~~~aA~~lgIP~V~is~~~~~~i~-~~~~~~~~~~~~~i~~~l 171 (838)
+. ......+++++.+||+|.+.. ...+..++...++|...++..+|+... ..... ....+ ..+
T Consensus 67 ~~---------~~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~----~~~~~-~~~ 132 (374)
T TIGR03088 67 VA---------VYPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNW----KYRWL-RRL 132 (374)
T ss_pred hH---------HHHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhHH----HHHHH-HHH
Confidence 00 122335667889999999874 223445667778997555433321000 00000 00000 000
Q ss_pred HhhccccceEEecCCC--------CCCC-CCCceeecCcccccCCc---ChHHHHHHhCCCCCCcEEEEEcCCCCch---
Q 003222 172 AEDYSHCEFLIRLPGY--------CPMP-AFRDVIDVPLVVRRLHK---SRKEVRKELGIEDDVKLLILNFGGQPAG--- 236 (838)
Q Consensus 172 ~~~y~~~d~ll~~~~~--------~~~p-~~~~v~~ip~~~~~~~~---~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--- 236 (838)
.. ..++.++..... ...+ ....+++.|+......+ .+...++.... .+.+.++++.|.....
T Consensus 133 ~~--~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vGrl~~~Kg~ 209 (374)
T TIGR03088 133 YR--PLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFF-ADESVVVGTVGRLQAVKDQ 209 (374)
T ss_pred HH--hcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcC-CCCCeEEEEEecCCcccCH
Confidence 00 011111211000 0001 11123344443221111 12222222222 3456788888877652
Q ss_pred hhhHHh---hC---C---CCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEEec----CChhhH
Q 003222 237 WKLKEE---YL---P---SGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCMLGK----IGYGTV 292 (838)
Q Consensus 237 ~~ll~~---l~---~---~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~It~----gG~~Tv 292 (838)
..++++ +. + +++.++++|..... +..++.+.++.++++++|+.+|++|.- |-..++
T Consensus 210 ~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~ 289 (374)
T TIGR03088 210 PTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTI 289 (374)
T ss_pred HHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHH
Confidence 122232 21 1 25788888865421 346688888888899999999999953 334689
Q ss_pred HHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 293 SEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 293 ~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.|||++|+|+|+.+... +.+.++....|..++..+ .+.+.++|.++++++
T Consensus 290 lEAma~G~Pvv~s~~~g------~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 290 LEAMASGLPVIATAVGG------NPELVQHGVTGALVPPGD--AVALARALQPYVSDP 339 (374)
T ss_pred HHHHHcCCCEEEcCCCC------cHHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCH
Confidence 99999999999987433 334565666788887655 468899999988755
No 92
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.02 E-value=5.1e-08 Score=107.26 Aligned_cols=121 Identities=18% Similarity=0.066 Sum_probs=85.3
Q ss_pred CCcEEEEEcCCCCch--h-hhHH---hhCCCCcEEEEeCCCCCC--------CCCCeEECCCC--CCHHHHHhhcCEEEe
Q 003222 222 DVKLLILNFGGQPAG--W-KLKE---EYLPSGWKCLVCGASDSQ--------LPPNFIKLPKD--AYTPDFMAASDCMLG 285 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~--~-~ll~---~l~~~~~~~vv~G~~~~~--------lp~nv~~~~~~--~~~pdlLa~adl~It 285 (838)
+.+.++++.|+.... . .+++ .+..+++.++++|..... ...|+++.++. +.++++|+.+|++|.
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ 268 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVV 268 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEE
Confidence 455677788876542 2 2223 222246788888876532 24789988887 456689999999994
Q ss_pred c-----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 286 K-----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 286 ~-----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
. +...++.||+++|+|+|+.+.. .+.+.++..+.|..+...+ .+.+.+++.++++++
T Consensus 269 ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~------~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~ 330 (359)
T cd03823 269 PSIWPENFPLVIREALAAGVPVIASDIG------GMAELVRDGVNGLLFPPGD--AEDLAAALERLIDDP 330 (359)
T ss_pred cCcccCCCChHHHHHHHCCCCEEECCCC------CHHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhCh
Confidence 2 2334799999999999997632 2455667667898888766 478899999998765
No 93
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.01 E-value=7.7e-09 Score=112.93 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+..++..+++..|.. .|++|.|.++||.++|||||||..+|++.|++.++|.++++++++++|.++|
T Consensus 65 nl~~~~~~~~~~~~~~~--~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig--------- 133 (300)
T PRK03188 65 NLAWRAAELLAEHVGRA--PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG--------- 133 (300)
T ss_pred cHHHHHHHHHHHHhCCC--CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------
Confidence 45555566666677753 6899999999999999999999999999999999999999999999998764
Q ss_pred hhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEE
Q 003222 691 VMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI 730 (838)
Q Consensus 691 ~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~ 730 (838)
.|..++.+||. ++. ....+...++..+.++.++++
T Consensus 134 -~dv~~~~~GG~---~~~-~~~g~~~~~~~~~~~~~~~lv 168 (300)
T PRK03188 134 -SDVPFALLGGT---ALG-TGRGEQLAPVLARGTFHWVLA 168 (300)
T ss_pred -CCcchhhcCCe---EEE-EecCCEEEECCCCCCcEEEEE
Confidence 36667889983 333 333333344444334444443
No 94
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.00 E-value=1.2e-08 Score=112.20 Aligned_cols=111 Identities=14% Similarity=0.227 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|.+..++..+++..|. .|+++.|.++||.++|||||||+.+|.+.|++.+++.+++++++++++.+.| .+
T Consensus 64 ~n~~~~~~~~~~~~~g~---~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge------~s 134 (324)
T TIGR00144 64 RSRIMEAARKTLKHIGS---EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGG------TS 134 (324)
T ss_pred HHHHHHHHHHHHHHhCC---CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCC------CC
Confidence 55666666667766663 4899999999999999999999999999999999999999999999998544 55
Q ss_pred ChhhHHHhhcCCCCeEEEEEe----c--------------CCceeeeeccCCCeEEEEEeCCCC
Q 003222 690 GVMDQMASACGEANKLLAMVC----Q--------------PAELLGVVEIPSHIRFWGIDSGIR 735 (838)
Q Consensus 690 G~mDq~a~~~G~~~~~l~~d~----~--------------~~~~~~~v~~~~~~~~vi~~s~~~ 735 (838)
| .|.+++.+||. .++. . +.....++++| ++.++++--+..
T Consensus 135 ~-~~va~~~~GG~----vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~ 192 (324)
T TIGR00144 135 G-IGVASFEDGGF----IVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID 192 (324)
T ss_pred c-cceeeeeeCCE----EEECCcccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC
Confidence 5 46788999993 3331 1 11122355666 888888765544
No 95
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.98 E-value=8.4e-09 Score=111.36 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+.-++..+++..|.. .|+++.|.++||.++|||||||..+|++.+++.+++.+++++++.++|... |
T Consensus 67 nl~~~a~~~~~~~~~~~--~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~---------G 135 (280)
T PRK14614 67 NIAWRAADALLDLSGRE--VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKL---------G 135 (280)
T ss_pred cHHHHHHHHHHHHhCCC--CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh---------C
Confidence 55544556666666653 589999999999999999999999999999999999999999999999754 3
Q ss_pred hhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 691 VMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 691 ~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
.|...+.+||. .+. ....+...+++.+.+..++++++++.-++
T Consensus 136 -~Dv~~~l~gg~---~~~-~g~ge~~~~l~~~~~~~ivl~~p~~~~sT 178 (280)
T PRK14614 136 -ADVPFFIFKKT---ALA-EGIGDKLTAVEGVPPLWVVLVNPGLHVST 178 (280)
T ss_pred -CCcceeeeCCc---EEE-EEcCceeEECCCCCCcEEEEECCCCCCCH
Confidence 37767788873 222 22233334555445677899999887764
No 96
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.98 E-value=1.1e-07 Score=105.52 Aligned_cols=278 Identities=17% Similarity=0.108 Sum_probs=148.4
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHHH
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSI 106 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 106 (838)
.|--..+..++++|.++||+|++++..... ...+...++.+..... ..... +..+ ..
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~---~~~~---------~~ 66 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRL--VAELEAEGSRHIKLPF---------ISKNP---LRIL---------LN 66 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCch--HHHHHhcCCeEEEccc---------cccch---hhhH---------HH
Confidence 466667789999999999999999764321 1111111222221100 00000 0000 01
Q ss_pred HHHHHHHHhcCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchh-H-HHHhhhhhccc---chHHHHHHHHhhcccc
Q 003222 107 LKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWD-F-IYAEYVMAAGH---HHRSIVWQIAEDYSHC 178 (838)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~-~-i~~~~~~~~~~---~~~~i~~~l~~~y~~~ 178 (838)
......++++.+||+|+.+.. +.+.++++..++|.+...+-.|. . .+......... .-+.+.+.+...+...
T Consensus 67 ~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~ 146 (355)
T cd03819 67 VARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVD 146 (355)
T ss_pred HHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCC
Confidence 223355678899999998752 23445567779998865332221 1 11110000000 0011111111111100
Q ss_pred ceEEecCCCCCCCCCCceeecCccccc--C-CcChH---HHHHHhCCCCCCcEEEEEcCCCCch---hhhHH---hhCC-
Q 003222 179 EFLIRLPGYCPMPAFRDVIDVPLVVRR--L-HKSRK---EVRKELGIEDDVKLLILNFGGQPAG---WKLKE---EYLP- 245 (838)
Q Consensus 179 d~ll~~~~~~~~p~~~~v~~ip~~~~~--~-~~~~~---~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~---~l~~- 245 (838)
+....+++.|+.... + ...+. .+++.++.+ +...++++.|..... ..+++ .+..
T Consensus 147 ------------~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~ 213 (355)
T cd03819 147 ------------PDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLP-KGKPVILLPGRLTRWKGQEVFIEALARLKKD 213 (355)
T ss_pred ------------hhhEEEecCCccccccCccccchHHHHHHHHHcCCC-CCceEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 001122222321111 1 11111 245666654 444567777876542 22332 3332
Q ss_pred -CCcEEEEeCCCCCC---------------CCCCeEECCCCCCHHHHHhhcCEEEecC-----ChhhHHHHHHcCCcEEE
Q 003222 246 -SGWKCLVCGASDSQ---------------LPPNFIKLPKDAYTPDFMAASDCMLGKI-----GYGTVSEALAYKLPFVF 304 (838)
Q Consensus 246 -~~~~~vv~G~~~~~---------------lp~nv~~~~~~~~~pdlLa~adl~It~g-----G~~Tv~Eal~~GvP~l~ 304 (838)
+++.++++|..... +.+||+++++.+.++++|+.||++|.-+ ..+++.||+++|+|+|+
T Consensus 214 ~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~ 293 (355)
T cd03819 214 DPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIA 293 (355)
T ss_pred CCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEE
Confidence 56788888865421 3568999999888899999999999754 23689999999999999
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 305 iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
..... ..+.+...+.|..++..+ .+.+.++|.+++.
T Consensus 294 ~~~~~------~~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~ 329 (355)
T cd03819 294 SDHGG------ARETVRPGETGLLVPPGD--AEALAQALDQILS 329 (355)
T ss_pred cCCCC------cHHHHhCCCceEEeCCCC--HHHHHHHHHHHHh
Confidence 76432 234455556788887655 4678888866654
No 97
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.97 E-value=9.6e-08 Score=105.98 Aligned_cols=129 Identities=23% Similarity=0.174 Sum_probs=88.0
Q ss_pred HHHhCCCCCCcEEEEEcCCCCch--hh-hHH---hhC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHH
Q 003222 214 RKELGIEDDVKLLILNFGGQPAG--WK-LKE---EYL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTP 274 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~~--~~-ll~---~l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~p 274 (838)
++..+.. +.+.++++.|+.... .+ +++ .+. .+++.++++|..... ++++|+..++.+.++
T Consensus 183 ~~~~~~~-~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 261 (358)
T cd03812 183 RRELGIL-EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVP 261 (358)
T ss_pred HHHcCCC-CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHH
Confidence 4444544 445677888877653 22 222 232 256788888865421 467899999877889
Q ss_pred HHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 275 DFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 275 dlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++++.||++|.. +-.++++|||++|+|+|+.......| .++. +.+......+ ++.+.++|.++++++
T Consensus 262 ~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~------~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~ 332 (358)
T cd03812 262 ELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEV------DLTD-LVKFLSLDES--PEIWAEEILKLKSED 332 (358)
T ss_pred HHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhh------hhcc-CccEEeCCCC--HHHHHHHHHHHHhCc
Confidence 999999999964 23468999999999999987544333 3444 5554444333 579999999999887
Q ss_pred CC
Q 003222 351 PC 352 (838)
Q Consensus 351 ~~ 352 (838)
..
T Consensus 333 ~~ 334 (358)
T cd03812 333 RR 334 (358)
T ss_pred ch
Confidence 54
No 98
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.97 E-value=1.4e-07 Score=103.56 Aligned_cols=130 Identities=20% Similarity=0.182 Sum_probs=88.5
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC------------CCCCeEECCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ------------LPPNFIKLPK 269 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~------------lp~nv~~~~~ 269 (838)
+...++.+++++ ...+++++|+.... ..+++. +. .+++.++++|..... ++.++.+.+.
T Consensus 180 ~~~~~~~~~~~~-~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~ 258 (365)
T cd03807 180 RARLREELGLPE-DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGE 258 (365)
T ss_pred hHHHHHhcCCCC-CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccc
Confidence 344566777764 44567788876652 223332 22 246778888865421 3567888887
Q ss_pred CCCHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHH
Q 003222 270 DAYTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLER 345 (838)
Q Consensus 270 ~~~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ 345 (838)
.+.++++|+.||++|..+. .+++.||+++|+|+|+.+... +.+.+.+ .|..++..+ .+.+..+|.+
T Consensus 259 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~------~~e~~~~--~g~~~~~~~--~~~l~~~i~~ 328 (365)
T cd03807 259 RSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGD------NAELVGD--TGFLVPPGD--PEALAEAIEA 328 (365)
T ss_pred cccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCC------hHHHhhc--CCEEeCCCC--HHHHHHHHHH
Confidence 7888999999999997543 368999999999999976432 2334444 566676555 5788999999
Q ss_pred HhhCC
Q 003222 346 AISLK 350 (838)
Q Consensus 346 ll~~~ 350 (838)
+++++
T Consensus 329 l~~~~ 333 (365)
T cd03807 329 LLADP 333 (365)
T ss_pred HHhCh
Confidence 98765
No 99
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.97 E-value=8.7e-09 Score=110.37 Aligned_cols=114 Identities=11% Similarity=0.168 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCC
Q 003222 608 KWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGA 687 (838)
Q Consensus 608 ~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~ 687 (838)
.|.|++..++..+.+..+ . .|++|.+.++||.|+|||||||..+|++.+++.+++.+++..+++++|.+.
T Consensus 62 ~~~Nlv~~a~~~~~~~~~--~-~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~i------- 131 (269)
T PRK14609 62 PEDNLVVKAYNLLKKDFP--L-PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATL------- 131 (269)
T ss_pred ccccHHHHHHHHHHHHcC--C-CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-------
Confidence 467888887777766555 3 489999999999999999999999999999999999999999999999966
Q ss_pred CCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC-CCeEEEEEeCCCCCcC
Q 003222 688 PCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP-SHIRFWGIDSGIRHSV 738 (838)
Q Consensus 688 ~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~-~~~~~vi~~s~~~~~~ 738 (838)
| +|...+..|+. + +.... .+...+++.+ .++.++++++++.-++
T Consensus 132 --G-aDvpffl~g~~--a-~~~G~-Ge~l~~l~~~~~~~~~vlv~P~~~~sT 176 (269)
T PRK14609 132 --G-ADCAFFIRNKP--V-YATGI-GDIFSPIDLSLSGYYIALVKPDIHVST 176 (269)
T ss_pred --C-CCceEEccCCC--E-EEEEe-CCeeEECCCCCCCCEEEEECCCCCCCh
Confidence 3 47666666763 2 22222 2333555432 4667899988877654
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.94 E-value=2e-07 Score=111.62 Aligned_cols=121 Identities=9% Similarity=0.002 Sum_probs=85.2
Q ss_pred CcEEEEEcCCCCc--hh-hhHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEE
Q 003222 223 VKLLILNFGGQPA--GW-KLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCM 283 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~--~~-~ll~~---l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~ 283 (838)
...++++.|.... +. .++++ +. .+++.++++|..... +.++|++.++.++++.+|+.+|+|
T Consensus 516 ~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~ 595 (694)
T PRK15179 516 ARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAF 595 (694)
T ss_pred CCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEE
Confidence 3456667776554 22 23333 22 256888888865421 457899999999999999999999
Q ss_pred Eec---CC-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 284 LGK---IG-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 284 It~---gG-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
|.- -| .+++.|||++|+|+|+....+ +.+.++....|+.++..+.+++.|.++|.+++.+
T Consensus 596 VlpS~~Egfp~vlLEAMA~G~PVVat~~gG------~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~ 659 (694)
T PRK15179 596 LLLSRFEGLPNVLIEAQFSGVPVVTTLAGG------AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDM 659 (694)
T ss_pred EeccccccchHHHHHHHHcCCeEEEECCCC------hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhC
Confidence 962 33 358999999999999987432 3345666667999987776666788888887754
No 101
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.93 E-value=2e-08 Score=108.32 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=108.8
Q ss_pred EEEcccccccc----ccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 499 VARAPGRLDVM----GGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 499 ~~~APGRv~L~----GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
.++||++|||+ |---| |+.--.+-.+|+++-.+.+.+.+++ +++...+
T Consensus 4 ~~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~~----------------------~~i~~~~----- 56 (276)
T PRK14612 4 ERLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIASG----------------------LELRVLG----- 56 (276)
T ss_pred EEeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCCc----------------------EEEEcCC-----
Confidence 35899999985 55555 7777888889998888877764321 1121000
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHH
Q 003222 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVE 653 (838)
Q Consensus 574 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~ 653 (838)
..++. +..|.+.-++..+++..|.. .|++|.+.++||+|+|||||||..
T Consensus 57 ----~~~p~-------------------------~~~Nli~ka~~~~~~~~g~~--~~~~I~i~k~IP~~~GLGssSa~a 105 (276)
T PRK14612 57 ----ADLPT-------------------------DERNLVYRAARAYLDAAGQP--GGVRITLEKRLPLAAGLGGGSSDA 105 (276)
T ss_pred ----CCCCC-------------------------CCcccHHHHHHHHHHHhCCC--CCeEEEEEecCCCcCCCchHHHHH
Confidence 00010 11344544456666677753 599999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCC
Q 003222 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSG 733 (838)
Q Consensus 654 va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~ 733 (838)
+|++.+++.+++.+++.. +++...| .|...+.+||. .+...+ .+...+++.+ .+.++|+..+
T Consensus 106 aa~l~al~~l~~~~l~l~---~ia~~~g----------~dv~~~~~GG~---~~~~g~-g~~~~~l~~~-~~~~vv~~P~ 167 (276)
T PRK14612 106 AATLLALAQLYPAPVDLP---ALALTLG----------ADVPFFLLGGA---AEARGV-GERLTPLELP-PVPLVLVNPG 167 (276)
T ss_pred HHHHHHHHHHhCCChHHH---HHHHHhC----------CCcCeeeeCCe---EEEEec-CccceEcCCC-CcEEEEECCC
Confidence 999999999999877544 4444332 27677888884 222222 2223455543 6778999988
Q ss_pred CCCcC
Q 003222 734 IRHSV 738 (838)
Q Consensus 734 ~~~~~ 738 (838)
+..++
T Consensus 168 ~~~sT 172 (276)
T PRK14612 168 VAVSA 172 (276)
T ss_pred CCCCH
Confidence 87753
No 102
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.93 E-value=1.8e-07 Score=102.18 Aligned_cols=293 Identities=18% Similarity=0.047 Sum_probs=152.4
Q ss_pred CcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHH
Q 003222 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKS 105 (838)
Q Consensus 26 G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 105 (838)
+.|+..++..++++|.+.||+|++++............. . ... ... . ...... . ... ...
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~-~--~~~--~~~--~---~~~~~~---~-~~~------~~~ 72 (374)
T cd03801 13 VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVG-G--IVV--VRP--P---PLLRVR---R-LLL------LLL 72 (374)
T ss_pred cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeec-C--cce--ecC--C---cccccc---h-hHH------HHH
Confidence 479999999999999999999999987542211110000 0 000 000 0 000000 0 000 001
Q ss_pred HHHHHHHHHhcCCCcEEEECCCchHH---HHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccceEE
Q 003222 106 ILKDEVEWLNSIKADLVVSDVVPVAC---RAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLI 182 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~~~~~~---~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d~ll 182 (838)
.......++++.+||+|+........ .++...++|.+...+-.+....... .. .............+..++.++
T Consensus 73 ~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~d~~i 149 (374)
T cd03801 73 LALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNE-LG--LLLKLARALERRALRRADRII 149 (374)
T ss_pred HHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccc-hh--HHHHHHHHHHHHHHHhCCEEE
Confidence 12233556788899999987633322 3567779998765321111000000 00 000000000111222233333
Q ss_pred ecCCC--------CCCC-CCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hCC--
Q 003222 183 RLPGY--------CPMP-AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YLP-- 245 (838)
Q Consensus 183 ~~~~~--------~~~p-~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~~-- 245 (838)
..... ...+ ....+++.|.........+...+...... ....+++++|+.... ..+++. +..
T Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~ 228 (374)
T cd03801 150 AVSEATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLGIP-EDEPVILFVGRLVPRKGVDLLLEALAKLRKEY 228 (374)
T ss_pred EecHHHHHHHHhcCCCCCCcEEEecCcccccccCccchHHHhhcCCc-CCCeEEEEecchhhhcCHHHHHHHHHHHhhhc
Confidence 21110 0000 11112222221111111112233333333 344567788876542 223332 222
Q ss_pred CCcEEEEeCCCCC-----------CCCCCeEECCCC--CCHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCC
Q 003222 246 SGWKCLVCGASDS-----------QLPPNFIKLPKD--AYTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 246 ~~~~~vv~G~~~~-----------~lp~nv~~~~~~--~~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~ 308 (838)
+++.++++|.... ..+.||.+.++. +.+.++|..||++|.- +..+++.||+++|+|+|+.+..
T Consensus 229 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~ 308 (374)
T cd03801 229 PDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG 308 (374)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCC
Confidence 3577888885431 146789888887 5677999999999953 3456899999999999998753
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 309 ~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
. ..+.++..+.|..++..+ ++.+.++|.++++++
T Consensus 309 ~------~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 342 (374)
T cd03801 309 G------IPEVVEDGETGLLVPPGD--PEALAEAILRLLDDP 342 (374)
T ss_pred C------hhHHhcCCcceEEeCCCC--HHHHHHHHHHHHcCh
Confidence 3 344566678888887665 578899999988765
No 103
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.92 E-value=1.1e-06 Score=100.27 Aligned_cols=131 Identities=20% Similarity=0.225 Sum_probs=86.7
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC-CCCcEEEEeCCCCCC---------C-CCCeEECCCCC--
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL-PSGWKCLVCGASDSQ---------L-PPNFIKLPKDA-- 271 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~-~~~~~~vv~G~~~~~---------l-p~nv~~~~~~~-- 271 (838)
..+++.+++++ .+.++++.|..... ..++++ +. .++++++++|..... . ..||+++++++
T Consensus 217 ~~~~~~~~~~~-~~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~ 295 (412)
T PRK10307 217 DALRAQLGLPD-GKKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYD 295 (412)
T ss_pred HHHHHHcCCCC-CCEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHH
Confidence 45777788764 44567778877653 223333 22 245788888865421 1 24899888864
Q ss_pred CHHHHHhhcCEEEe--c-CC-----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 272 YTPDFMAASDCMLG--K-IG-----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 ~~pdlLa~adl~It--~-gG-----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++++|+.||++|. . .+ .+.+.|+|++|+|+|+....+ .+ ..+.++ +.|+.++..+ ++.+.++|
T Consensus 296 ~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g-~~---~~~~i~--~~G~~~~~~d--~~~la~~i 367 (412)
T PRK10307 296 RLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPG-TE---LGQLVE--GIGVCVEPES--VEALVAAI 367 (412)
T ss_pred HHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCC-ch---HHHHHh--CCcEEeCCCC--HHHHHHHH
Confidence 56789999999874 2 22 124689999999999987432 11 122333 6788887766 46899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++++++
T Consensus 368 ~~l~~~~ 374 (412)
T PRK10307 368 AALARQA 374 (412)
T ss_pred HHHHhCH
Confidence 9998765
No 104
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.92 E-value=5.2e-07 Score=98.19 Aligned_cols=117 Identities=16% Similarity=0.032 Sum_probs=78.9
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCE
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDC 282 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~--~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl 282 (838)
+.+.++++.|+.... ..+++ .+.. +++.++++|..... +.++|.+.++.++++++++.||+
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~ 266 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADL 266 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCE
Confidence 445677888876642 22333 2222 36778888865421 46789999988888899999999
Q ss_pred EEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 283 MLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 283 ~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
+|.. +..+++.||+++|+|+|+.... ...+.+++...|..++..+. +.+...++.+
T Consensus 267 ~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~------~~~e~i~~~~~g~~~~~~~~--~~~~~~~~~i 326 (353)
T cd03811 267 FVLSSRYEGFPNVLLEAMALGTPVVATDCP------GPREILEDGENGLLVPVGDE--AALAAAALAL 326 (353)
T ss_pred EEeCcccCCCCcHHHHHHHhCCCEEEcCCC------ChHHHhcCCCceEEECCCCH--HHHHHHHHHH
Confidence 9953 2346899999999999997643 23456777888988876553 4553333333
No 105
>PRK01212 homoserine kinase; Provisional
Probab=98.91 E-value=1.5e-08 Score=110.71 Aligned_cols=113 Identities=20% Similarity=0.268 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+.-++..+.+..|.. .|++|.|.++||.|+|||||||..+|++.+++.++|.+++.++++++|.++|.+
T Consensus 63 Nli~~a~~~~~~~~~~~--~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~~------- 133 (301)
T PRK01212 63 NLVYQAALKFLEKLGKP--PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEGH------- 133 (301)
T ss_pred ccHHHHHHHHHHHcCCC--CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-------
Confidence 44555556666666753 689999999999999999999999999999999999999999999999999962
Q ss_pred hhhHH-HhhcCCCCeEEEE-EecCCceeeeeccCCCeEEEEEeCCCCCc
Q 003222 691 VMDQM-ASACGEANKLLAM-VCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (838)
Q Consensus 691 ~mDq~-a~~~G~~~~~l~~-d~~~~~~~~~v~~~~~~~~vi~~s~~~~~ 737 (838)
.|+. ++.+||. .+. +.. .+...+++.+.++.+++++++..-+
T Consensus 134 -~ddv~~~l~GG~---~~~~~g~-g~~~~~~~~~~~~~~vlv~p~~~~s 177 (301)
T PRK01212 134 -PDNVAPALLGGL---VLALEEN-GVISVKIPVFDDLKWVVAIPNIELS 177 (301)
T ss_pred -HHHHHHHHhCCE---EEEEECC-ceEEEEecCCCCeEEEEEECCCcCC
Confidence 3555 6789994 333 233 2333667666778888988876543
No 106
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.91 E-value=4.1e-08 Score=106.75 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=113.0
Q ss_pred eEEEEcccccccc----ccccc-cCCCeeeccccc-cceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccc
Q 003222 497 IFVARAPGRLDVM----GGIAD-YSGSLVLQMPIR-EACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 570 (838)
Q Consensus 497 ~~~~~APGRv~L~----GeH~D-y~gg~vl~~ai~-~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~ 570 (838)
...+.||+||||+ |-.-| |+.--.+-++|+ .+-.+.+.+.+... +.+...+
T Consensus 6 ~~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~---------------------i~~~~~~-- 62 (296)
T PRK14615 6 AVTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAPG---------------------ITVTCTI-- 62 (296)
T ss_pred eEEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCCC---------------------EEEEECC--
Confidence 4567999999986 66656 777777888887 47777776654321 2222100
Q ss_pred cCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHH
Q 003222 571 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (838)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (838)
.+++ . . .|.+.-++..+.+..+.. .|++|.|.++||.++||||||
T Consensus 63 ---------~~~~---------------------~--~-~Nlv~~a~~~~~~~~~~~--~~~~i~i~k~IP~~~GLGsgs 107 (296)
T PRK14615 63 ---------PDLD---------------------P--E-RNTVTRAYTAFAAATGFR--PPLEVHLRKGIPHGAGLGGGS 107 (296)
T ss_pred ---------CCCC---------------------C--C-ccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCCCCccHHH
Confidence 0000 0 1 345545556666666654 589999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeecc-CCCeEEEE
Q 003222 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEI-PSHIRFWG 729 (838)
Q Consensus 651 A~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~-~~~~~~vi 729 (838)
|..+|++.+++++++.+++.++++++|...|.. +|. +..||. ++ . ....+...++++ ++++.+++
T Consensus 108 a~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaD---vPf-------fl~gg~--a~-~-~G~Ge~~~~l~~~~~~~~~vl 173 (296)
T PRK14615 108 ADAAALLRHLNSIAPHPLSPEALAKLAAGVGAD---VPF-------FLHNVP--CR-A-TGIGEILTPVALGLSGWTLVL 173 (296)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC---Cee-------eccCCC--EE-E-EeeEeEEEECCCCCCCcEEEE
Confidence 999999999999999999999999999987752 332 233432 21 1 111222244543 24566888
Q ss_pred EeCCCCCcC
Q 003222 730 IDSGIRHSV 738 (838)
Q Consensus 730 ~~s~~~~~~ 738 (838)
+++++.-++
T Consensus 174 ~~P~~~vsT 182 (296)
T PRK14615 174 VCPEVQVST 182 (296)
T ss_pred ECCCCCcCh
Confidence 888776654
No 107
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.89 E-value=5.5e-07 Score=101.18 Aligned_cols=238 Identities=16% Similarity=0.060 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCCCcEEEECCC----chHHHHHHHhCCcEEEEec----Cc----hh-HHHHhhhhhcccchHHHHHHHHh
Q 003222 107 LKDEVEWLNSIKADLVVSDVV----PVACRAAADAGIRSVCVTN----FS----WD-FIYAEYVMAAGHHHRSIVWQIAE 173 (838)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~----~~~~~aA~~lgIP~V~is~----~~----~~-~i~~~~~~~~~~~~~~i~~~l~~ 173 (838)
+....+++++++||+|++..+ .++.++|..++||++.+.. +. |. ...+. +...+..
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~s~~~~~~~~~~~~r~-----------~~~~~ad 143 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRTGDRYSPMPEEINRQ-----------LTGHIAD 143 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCCcCCCCCCCccHHHHH-----------HHHHHHH
Confidence 345567889999999997642 4567788899999986521 10 11 00010 0111100
Q ss_pred h-cccc----ceEEecCCCCCCCCCCceeecCcccc---c-CCcChHHHHHHhCCCCCCcEEEEEcCCCC---ch-hhhH
Q 003222 174 D-YSHC----EFLIRLPGYCPMPAFRDVIDVPLVVR---R-LHKSRKEVRKELGIEDDVKLLILNFGGQP---AG-WKLK 240 (838)
Q Consensus 174 ~-y~~~----d~ll~~~~~~~~p~~~~v~~ip~~~~---~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~---~~-~~ll 240 (838)
. +..+ +.+... . ..+....+++.|.... . ....+..+++.++. ++++++++++... .+ ..++
T Consensus 144 ~~~~~s~~~~~~l~~~--G-~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~~~~k~~~~ll 218 (365)
T TIGR00236 144 LHFAPTEQAKDNLLRE--N-VKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGE--DKRYILLTLHRRENVGEPLENIF 218 (365)
T ss_pred hccCCCHHHHHHHHHc--C-CCcccEEEeCChHHHHHHHHHhhccchhHHHhcCC--CCCEEEEecCchhhhhhHHHHHH
Confidence 0 0000 001110 0 1111223444443221 1 11113455666652 4467777765322 11 1233
Q ss_pred Hh---hC--CCCcEEEEe-CCCCC---------CCCCCeEECCCCCCH--HHHHhhcCEEEecCChhhHHHHHHcCCcEE
Q 003222 241 EE---YL--PSGWKCLVC-GASDS---------QLPPNFIKLPKDAYT--PDFMAASDCMLGKIGYGTVSEALAYKLPFV 303 (838)
Q Consensus 241 ~~---l~--~~~~~~vv~-G~~~~---------~lp~nv~~~~~~~~~--pdlLa~adl~It~gG~~Tv~Eal~~GvP~l 303 (838)
++ +. .+++.++++ +.+.. ...+||++++...+. ..+|+.+|++|+.+| +.+.||+++|+|+|
T Consensus 219 ~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg-~~~~EA~a~g~PvI 297 (365)
T TIGR00236 219 KAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDSG-GVQEEAPSLGKPVL 297 (365)
T ss_pred HHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECCh-hHHHHHHHcCCCEE
Confidence 32 22 135666665 33221 124678888766543 478899999999887 45799999999999
Q ss_pred EEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHH
Q 003222 304 FVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (838)
Q Consensus 304 ~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~ 370 (838)
.++.. .+++ .+...|.+..+. . +++.+.+++.++++++.... ..+...+++++.|.++
T Consensus 298 ~~~~~--~~~~----e~~~~g~~~lv~-~--d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 298 VLRDT--TERP----ETVEAGTNKLVG-T--DKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLNH 364 (365)
T ss_pred ECCCC--CCCh----HHHhcCceEEeC-C--CHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHhh
Confidence 98632 2332 133467776663 2 35788899999887653210 2345556666665543
No 108
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.88 E-value=4.1e-07 Score=101.76 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=83.5
Q ss_pred HHHhCCCCCCcEEEEEcCCCCc---h---hhhHHhh---CCCCcEEEEeCCCC--CC-------C---CCCeEECCCC--
Q 003222 214 RKELGIEDDVKLLILNFGGQPA---G---WKLKEEY---LPSGWKCLVCGASD--SQ-------L---PPNFIKLPKD-- 270 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~---~---~~ll~~l---~~~~~~~vv~G~~~--~~-------l---p~nv~~~~~~-- 270 (838)
++.++++ ++++|++++|+... . ..+++++ ...++.++..|... .. + .+|+++.++.
T Consensus 190 ~~~~~~~-~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 190 LELLGLL-PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred hhhcccC-CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCH
Confidence 3456664 56778888887653 1 1233332 12235555544332 11 2 4688877553
Q ss_pred CCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 271 AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 271 ~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.+++.+|+.||+||+.+| +.+.|++++|+|+|.++. .++ ...+.+.|+++.+.. +.+.+.++|.++++++
T Consensus 269 ~~~~~l~~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~--~~~----~~~~~~~g~~~~~~~---~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG-GIQEEASFLGVPVLNLRD--RTE----RPETVESGTNVLVGT---DPEAILAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHHcCcEEEEcCc-cHHhhhhhcCCCEEeeCC--CCc----cchhhheeeEEecCC---CHHHHHHHHHHHhcCc
Confidence 467789999999999999 778899999999999972 222 334667787766642 2568889999999875
Q ss_pred C
Q 003222 351 P 351 (838)
Q Consensus 351 ~ 351 (838)
.
T Consensus 339 ~ 339 (363)
T cd03786 339 F 339 (363)
T ss_pred h
Confidence 4
No 109
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.87 E-value=1e-07 Score=98.03 Aligned_cols=176 Identities=21% Similarity=0.301 Sum_probs=120.0
Q ss_pred EEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
.++|+|-+.++.-.++..|+. ++|++.+.+.++..+..+++ +
T Consensus 4 ~a~A~g~~TIiNAiatG~G~A---fgidL~v~a~v~~~~~~~~~-------------------------~---------- 45 (278)
T COG1685 4 RARAYGGGTIINAIATGKGSA---FGIDLKVEAEVRLSDEGKVR-------------------------G---------- 45 (278)
T ss_pred eEEecCceeEeeehhcCccce---eeecceEEEEEEEcCccccc-------------------------c----------
Confidence 457888888888888887764 78999888877765432210 0
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHH
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~ 658 (838)
. +..+ .+.+..++..+.+++|.. .|+++.++|+||.|+||.||+|+..|++.
T Consensus 46 -----~--------------------~~~d-~~li~~~~~~v~e~~g~~--~~~~v~v~SeiP~~~GLkSSSA~~nAlv~ 97 (278)
T COG1685 46 -----E--------------------PEGD-TRLIERCVERVREKYGIP--LGVEVEVESEIPVGSGLKSSSAASNALVK 97 (278)
T ss_pred -----C--------------------CCCC-hHHHHHHHHHHHHHcCCC--cceEEEEecCCCcccCcchhHHHHHHHHH
Confidence 0 0001 234455566677777764 58999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhhhcCCC-CChhhH-HHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCC
Q 003222 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAP-CGVMDQ-MASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736 (838)
Q Consensus 659 al~~l~~~~l~~~ela~~a~~~E~~~~G~~-~G~mDq-~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~ 736 (838)
|+..+.|.++++.++++++.++-... |.. .|-.|- .++.+||. .+.|-+.+.+....+.+ +...+|.--+.++
T Consensus 98 A~~~~~g~~~~~~~i~~l~a~~S~~a-GvSvTGA~DDa~AS~~GG~---~iTDN~~m~Ilrr~~~~-~~~vlI~~p~~k~ 172 (278)
T COG1685 98 AVLKALGEEIDDFEILRLGARASKEA-GVSVTGAFDDACASYLGGI---VITDNRKMRILRRLDLP-ELTVLILAPGEKR 172 (278)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHHhc-CceEeccchHHHHHHhCCe---EEecchhheehhccccC-CceEEEEecCCcc
Confidence 99999999999999999998877653 433 565655 57899993 45554444443333444 4444444444444
Q ss_pred cCCCCchhh
Q 003222 737 SVGGADYGS 745 (838)
Q Consensus 737 ~~~~~~y~~ 745 (838)
....-+.+.
T Consensus 173 ~~~~vdv~~ 181 (278)
T COG1685 173 LSANVDVNR 181 (278)
T ss_pred ccccCCHHH
Confidence 333334333
No 110
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.84 E-value=7.7e-07 Score=101.19 Aligned_cols=300 Identities=17% Similarity=0.090 Sum_probs=152.5
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCccccccc-CCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHH
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEI-QSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKS 105 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 105 (838)
.|.-.....||++|.++||+|+++|........... ...++.+... ..+... ..... .+..+...
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~----~~~~~-~~~~~~~~------- 85 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNV--VAGPYE----GLDKE-DLPTQLCA------- 85 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEe--cCCCcc----cCCHH-HHHHHHHH-------
Confidence 577788999999999999999999874321110000 0123333221 000000 00000 01001000
Q ss_pred HHHHH-HHHHh--cCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHH-Hhhcccc
Q 003222 106 ILKDE-VEWLN--SIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQI-AEDYSHC 178 (838)
Q Consensus 106 ~l~~~-~~~L~--~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l-~~~y~~~ 178 (838)
..... ..+++ ..+||+|.++.. .++..+++..++|.|...+-.+ .....+..............+ ...+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 164 (405)
T TIGR03449 86 FTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLA-AVKNAALADGDTPEPEARRIGEQQLVDNA 164 (405)
T ss_pred HHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchH-HHHHHhccCCCCCchHHHHHHHHHHHHhc
Confidence 11111 23333 358999988752 2345566778999876422111 111111100000000000001 1122333
Q ss_pred ceEEecCCC--------CCC-CCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---
Q 003222 179 EFLIRLPGY--------CPM-PAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE--- 242 (838)
Q Consensus 179 d~ll~~~~~--------~~~-p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~--- 242 (838)
+.++..... ... +....+++.|+.... ....+...++.++++.+ +.++++.|..... ..++++
T Consensus 165 d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~i~~~G~l~~~K~~~~li~a~~~ 243 (405)
T TIGR03449 165 DRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLD-TKVVAFVGRIQPLKAPDVLLRAVAE 243 (405)
T ss_pred CeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCCC-CcEEEEecCCCcccCHHHHHHHHHH
Confidence 433321110 000 111123344443221 12234456777887644 4566788877653 123332
Q ss_pred hCC--CC--cEEEEeCCCC----C------------CCCCCeEECCCCC--CHHHHHhhcCEEEec----CChhhHHHHH
Q 003222 243 YLP--SG--WKCLVCGASD----S------------QLPPNFIKLPKDA--YTPDFMAASDCMLGK----IGYGTVSEAL 296 (838)
Q Consensus 243 l~~--~~--~~~vv~G~~~----~------------~lp~nv~~~~~~~--~~pdlLa~adl~It~----gG~~Tv~Eal 296 (838)
+.. ++ +.++++|... + .+.++|+++++.+ .++++|+.||++|.. +...++.||+
T Consensus 244 l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAm 323 (405)
T TIGR03449 244 LLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQ 323 (405)
T ss_pred HHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHH
Confidence 221 33 6777777411 1 1356899988863 456899999999952 2235899999
Q ss_pred HcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 297 AYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 297 ~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++|+|+|+....... +.+++...|..++..+ .+.+.++|.++++++
T Consensus 324 a~G~Pvi~~~~~~~~------e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 324 ACGTPVVAARVGGLP------VAVADGETGLLVDGHD--PADWADALARLLDDP 369 (405)
T ss_pred HcCCCEEEecCCCcH------hhhccCCceEECCCCC--HHHHHHHHHHHHhCH
Confidence 999999998744322 3455666788887655 468889999998754
No 111
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.83 E-value=1.1e-06 Score=96.79 Aligned_cols=126 Identities=21% Similarity=0.202 Sum_probs=84.2
Q ss_pred HHHhCCCCCCcEEEEEcCCCCch---hhhHH---hhCC--CCcEEEEeCCCCCC-------------CCCCeEECCCCC-
Q 003222 214 RKELGIEDDVKLLILNFGGQPAG---WKLKE---EYLP--SGWKCLVCGASDSQ-------------LPPNFIKLPKDA- 271 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~---~l~~--~~~~~vv~G~~~~~-------------lp~nv~~~~~~~- 271 (838)
++.++.+ ++..++++.|+.... ..+++ .+.. +++.++++|..... +++||++.++++
T Consensus 194 ~~~~~~~-~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 272 (375)
T cd03821 194 RRKFPIL-PDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYG 272 (375)
T ss_pred hhhccCC-CCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCCh
Confidence 4445554 344566777876542 22333 2332 56788888865321 367899998876
Q ss_pred -CHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 272 -YTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 272 -~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
.+.++|+.||++|...- .+++.|||++|+|+|+.+.... .+.+.. +.|...... .+.+.++|.++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~------~~~~~~-~~~~~~~~~---~~~~~~~i~~l 342 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPW------QELIEY-GCGWVVDDD---VDALAAALRRA 342 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCH------HHHhhc-CceEEeCCC---hHHHHHHHHHH
Confidence 56789999999996432 3689999999999999874332 333444 777766543 26888999999
Q ss_pred hhCC
Q 003222 347 ISLK 350 (838)
Q Consensus 347 l~~~ 350 (838)
++++
T Consensus 343 ~~~~ 346 (375)
T cd03821 343 LELP 346 (375)
T ss_pred HhCH
Confidence 8765
No 112
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.82 E-value=4.9e-07 Score=101.88 Aligned_cols=128 Identities=20% Similarity=0.101 Sum_probs=85.5
Q ss_pred HHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC-----------------CCCCCeEECC
Q 003222 214 RKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS-----------------QLPPNFIKLP 268 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~-----------------~lp~nv~~~~ 268 (838)
++.++.+.+ ..++++.|+.... ..+++. +. .+++.++++|.... .+.+|+.+++
T Consensus 211 ~~~~~~~~~-~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 289 (398)
T cd03800 211 RARLLRDPD-KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPG 289 (398)
T ss_pred HHhhccCCC-CcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEec
Confidence 444444433 4566787876642 223332 22 24677777775431 0246788888
Q ss_pred CCC--CHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHH
Q 003222 269 KDA--YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPY 342 (838)
Q Consensus 269 ~~~--~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~ 342 (838)
+++ .++.+++.||+++..+ | ..++.||+++|+|+|+.+.. ...+.+++.+.|..++..+ .+.+.++
T Consensus 290 ~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~------~~~e~i~~~~~g~~~~~~~--~~~l~~~ 361 (398)
T cd03800 290 RVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVG------GPRDIVVDGVTGLLVDPRD--PEALAAA 361 (398)
T ss_pred cCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCC------CHHHHccCCCCeEEeCCCC--HHHHHHH
Confidence 864 4668899999999532 2 35899999999999987632 2445577777898887665 5788999
Q ss_pred HHHHhhCC
Q 003222 343 LERAISLK 350 (838)
Q Consensus 343 l~~ll~~~ 350 (838)
|.++++++
T Consensus 362 i~~l~~~~ 369 (398)
T cd03800 362 LRRLLTDP 369 (398)
T ss_pred HHHHHhCH
Confidence 99998765
No 113
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.82 E-value=1.2e-06 Score=99.02 Aligned_cols=120 Identities=12% Similarity=-0.024 Sum_probs=79.2
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC-----CCcEEEEeCCCCC--------------------CCCCCeEECCCC
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP-----SGWKCLVCGASDS--------------------QLPPNFIKLPKD 270 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~-----~~~~~vv~G~~~~--------------------~lp~nv~~~~~~ 270 (838)
+...++++.|..... ..+++ .+.. +++.++++|.... .+.+||+++++.
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~ 288 (392)
T cd03805 209 SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSI 288 (392)
T ss_pred CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 445667788876542 12233 2221 4678888885431 134678888887
Q ss_pred CC--HHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHH
Q 003222 271 AY--TPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLE 344 (838)
Q Consensus 271 ~~--~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~ 344 (838)
+. ++++|+.+|+++... | ..++.||+++|+|+|+...... .+.+...+.|..++. + ++.+.++|.
T Consensus 289 ~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~------~e~i~~~~~g~~~~~-~--~~~~a~~i~ 359 (392)
T cd03805 289 SDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGP------LETVVDGETGFLCEP-T--PEEFAEAML 359 (392)
T ss_pred ChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCc------HHHhccCCceEEeCC-C--HHHHHHHHH
Confidence 53 347899999999532 2 2578999999999999864332 234555567877653 3 578889999
Q ss_pred HHhhCC
Q 003222 345 RAISLK 350 (838)
Q Consensus 345 ~ll~~~ 350 (838)
++++++
T Consensus 360 ~l~~~~ 365 (392)
T cd03805 360 KLANDP 365 (392)
T ss_pred HHHhCh
Confidence 998765
No 114
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.79 E-value=7e-07 Score=102.50 Aligned_cols=81 Identities=12% Similarity=0.020 Sum_probs=57.4
Q ss_pred eEECCCCCCHHHHHhhcCE-EEe----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhh
Q 003222 264 FIKLPKDAYTPDFMAASDC-MLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGH 338 (838)
Q Consensus 264 v~~~~~~~~~pdlLa~adl-~It----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~ 338 (838)
|.+.+....++++|+.||+ |++ -+|..++.||+++|+|+|+.|. ...+....+.+.+.|+++.. .| ++.
T Consensus 304 v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~--~~~~~e~~~~~~~~g~~~~~--~d--~~~ 377 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPH--TFNFKEIFERLLQAGAAIQV--ED--AED 377 (425)
T ss_pred EEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCC--ccCHHHHHHHHHHCCCeEEE--CC--HHH
Confidence 4444444568899999999 453 2455679999999999999873 23344566677777776553 33 467
Q ss_pred HHHHHHHHhhCC
Q 003222 339 WKPYLERAISLK 350 (838)
Q Consensus 339 l~~~l~~ll~~~ 350 (838)
+.++|.++++++
T Consensus 378 La~~l~~ll~~~ 389 (425)
T PRK05749 378 LAKAVTYLLTDP 389 (425)
T ss_pred HHHHHHHHhcCH
Confidence 889999998765
No 115
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.78 E-value=1.3e-06 Score=96.65 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=82.3
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhc
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAAS 280 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~--~~~~~vv~G~~~~~-----------lp~nv~~~~~~~--~~pdlLa~a 280 (838)
+.+.+++++|..... ..+++ .+.. +++.+.++|..... +++||++.++.+ .+.++|+.|
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a 256 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAA 256 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhC
Confidence 345667777876542 22333 2322 46677888865421 467899998874 466899999
Q ss_pred CEEEe----------cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 281 DCMLG----------KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 281 dl~It----------~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|++|. -+..+++.||+++|+|+|+.+..... +.++....|..++..+ .+.+.++|.++++++
T Consensus 257 di~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~------~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 328 (355)
T cd03799 257 DLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIP------ELVEDGETGLLVPPGD--PEALADAIERLLDDP 328 (355)
T ss_pred CEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcc------hhhhCCCceEEeCCCC--HHHHHHHHHHHHhCH
Confidence 99997 23346899999999999997743322 2455555888887554 468889999988765
No 116
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.78 E-value=1.3e-06 Score=99.31 Aligned_cols=119 Identities=17% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhc
Q 003222 222 DVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAAS 280 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~--~~pdlLa~a 280 (838)
+...++++.|..... ..+++. +. .+++.+++.|..... +.++|.++++.+ .++++|+.+
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~a 270 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQG 270 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 345677888876542 223332 22 357788888865421 456788888863 567899999
Q ss_pred CEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 281 DCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 281 dl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|++|..+ |+ .++.|||++|+|+|+.+.....| .+. .|.+..... +.+.+.++|.+++++.
T Consensus 271 d~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e------~i~-~~~~~~~~~---~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 271 HIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPE------VLP-PDMILLAEP---DVESIVRKLEEAISIL 334 (398)
T ss_pred CEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchh------hee-CCceeecCC---CHHHHHHHHHHHHhCh
Confidence 9999633 32 48999999999999977543332 233 344444332 3578889999988754
No 117
>PTZ00299 homoserine kinase; Provisional
Probab=98.76 E-value=4.9e-08 Score=107.22 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhhhcC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIH---PRDLALLCQKVENHIVG 686 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~---~~ela~~a~~~E~~~~G 686 (838)
.|.+..++..+++..+.....|+++.+.++||.++|||||||..+|.+.+++.++|.+++ +.+++++|.+.|.
T Consensus 61 ~nlv~~a~~~~~~~~~~~~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EG---- 136 (336)
T PTZ00299 61 DNMVVQACRLAFEEYAHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEG---- 136 (336)
T ss_pred chHHHHHHHHHHHHhcCCCCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcC----
Confidence 345555555556566542124899999999999999999999999999999999999985 7899999999984
Q ss_pred CCCChhhHH-HhhcCCCCeEEEEEecCCce-eeeeccCCCeEEEEEeC
Q 003222 687 APCGVMDQM-ASACGEANKLLAMVCQPAEL-LGVVEIPSHIRFWGIDS 732 (838)
Q Consensus 687 ~~~G~mDq~-a~~~G~~~~~l~~d~~~~~~-~~~v~~~~~~~~vi~~s 732 (838)
..|+. ++++||. ++.....+.+. ..+++.++++.++++--
T Consensus 137 ----HpDNVapal~GG~--~~~~~~~~ge~~~~~i~~~~~~~~vv~iP 178 (336)
T PTZ00299 137 ----HPDNAAPAIYGGI--QLVYKKDNGRFLTYRVPTPPNLSVVLFVP 178 (336)
T ss_pred ----CcccHHHHHhCCE--EEEEecCCCceEEEecCCCCCeEEEEEEC
Confidence 25865 6888994 22222222333 23566666787777643
No 118
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.76 E-value=1.9e-06 Score=94.58 Aligned_cols=121 Identities=19% Similarity=0.109 Sum_probs=83.6
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhc
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAAS 280 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~--~~~~~vv~G~~~~~-----------lp~nv~~~~~~~--~~pdlLa~a 280 (838)
+.+.++++.|+.... ..+++ .+.. +++.++++|..... +++||.+.++.+ .+.++|..|
T Consensus 200 ~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 200 EDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 345677888876642 22233 2222 35677888865421 357899888875 356889999
Q ss_pred CEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 281 DCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 281 dl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|++|.. +..+++.||+++|+|+|+.+.. ...+.++..+.|..++..+ .+.+..+|.++++++
T Consensus 280 d~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~------~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 345 (377)
T cd03798 280 DVFVLPSLREGFGLVLLEAMACGLPVVATDVG------GIPEIITDGENGLLVPPGD--PEALAEAILRLLADP 345 (377)
T ss_pred CeeecchhhccCChHHHHHHhcCCCEEEecCC------ChHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCc
Confidence 999943 3456899999999999997633 2345566777788887665 468889999998766
No 119
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.73 E-value=2.7e-07 Score=98.84 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|.+.-++..+.+..|.. .|++|.+.++||.|+|||||||-.+|++.+++.+++.++++.+++++|.+.|.
T Consensus 61 ~Nlv~ra~~~l~~~~g~~--~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGa------- 131 (288)
T PRK00650 61 SNSIWKSVALFRRYTGIT--TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGM------- 131 (288)
T ss_pred ccHHHHHHHHHHHHhCCC--CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-------
Confidence 566666667776666754 58999999999999999999999999999999999999999999999998874
Q ss_pred ChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCC
Q 003222 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736 (838)
Q Consensus 690 G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~ 736 (838)
|--.++.||. ++. ....+..++++.+.+..++++..+..=
T Consensus 132 ---DvPffl~~g~--a~~--~G~Ge~l~~~~~~~~~~~vlv~P~~~v 171 (288)
T PRK00650 132 ---DTPFFFSTGS--ALG--VGRGEKIIALEESVSDRYVLYFSSEGV 171 (288)
T ss_pred ---cchhhhcCce--EEE--EecCCEEEECcCCCCceEEEEeCCCCC
Confidence 4334444442 222 223343355554455556777654443
No 120
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.73 E-value=3.2e-06 Score=96.03 Aligned_cols=82 Identities=12% Similarity=-0.045 Sum_probs=61.1
Q ss_pred CCCeEECCCCC--CHHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCC
Q 003222 261 PPNFIKLPKDA--YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDL 334 (838)
Q Consensus 261 p~nv~~~~~~~--~~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~ 334 (838)
.++|+++++++ .++++|+.+|++|.-+ |. .++.|||++|+|+|+..... +.+.+.....|..++..+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g------~~e~i~~~~~G~lv~~~d- 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAP------VREVITDGENGLLVDFFD- 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCC------chhhcccCCceEEcCCCC-
Confidence 35788888874 4668999999999532 22 37899999999999976433 233455556788887665
Q ss_pred ChhhHHHHHHHHhhCC
Q 003222 335 LTGHWKPYLERAISLK 350 (838)
Q Consensus 335 ~~~~l~~~l~~ll~~~ 350 (838)
++.+.++|.++++++
T Consensus 353 -~~~la~~i~~ll~~~ 367 (396)
T cd03818 353 -PDALAAAVIELLDDP 367 (396)
T ss_pred -HHHHHHHHHHHHhCH
Confidence 578999999998765
No 121
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=98.71 E-value=1.5e-07 Score=102.32 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.+.+..++..+.+..+.. .+++|.+.+++|.++|||||||..+|++.|++.++++++++.++++++.++| |..|
T Consensus 66 ~~~v~~~l~~~~~~~~~~--~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs----Gsa~ 139 (305)
T TIGR01240 66 NEKTSNCLDDFRQLRKEQ--EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS----GSAC 139 (305)
T ss_pred hHHHHHHHHHHHHhcCCC--CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc----CCee
Confidence 456667666665555543 5899999999999999999999999999999999999999999999999887 6666
Q ss_pred ChhhHHHhhcCCC
Q 003222 690 GVMDQMASACGEA 702 (838)
Q Consensus 690 G~mDq~a~~~G~~ 702 (838)
+ |++||.
T Consensus 140 ~------s~~GG~ 146 (305)
T TIGR01240 140 R------SLFGGY 146 (305)
T ss_pred e------eeecCe
Confidence 6 899995
No 122
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.69 E-value=3.5e-06 Score=93.24 Aligned_cols=120 Identities=16% Similarity=0.071 Sum_probs=82.0
Q ss_pred CCcEEEEEcCCCCch---hhhHHhh--CCCCcEEEEeCCCCCC-----------CCCCeEECCCCCC--HHHHHhhcCEE
Q 003222 222 DVKLLILNFGGQPAG---WKLKEEY--LPSGWKCLVCGASDSQ-----------LPPNFIKLPKDAY--TPDFMAASDCM 283 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~l--~~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~--~pdlLa~adl~ 283 (838)
....++++.|+.... ..+++.+ +. ++.++++|..... +.+||+++++++. ++++++.||++
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~-~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~ 267 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDVLLEAAAALP-DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVF 267 (357)
T ss_pred CCCcEEEEecccccccCHHHHHHHHHhcc-CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEE
Confidence 344567788876542 2233332 22 6778888865421 3578999998763 56899999999
Q ss_pred Eec-----CC-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 284 LGK-----IG-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 284 It~-----gG-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|.- -| ..++.||+++|+|+|+.+.....| .+.. .+.|..++..+ .+.+.++|.++++++
T Consensus 268 i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~------~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~ 333 (357)
T cd03795 268 VFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS------YVNLHGVTGLVVPPGD--PAALAEAIRRLLEDP 333 (357)
T ss_pred EeCCcccccccchHHHHHHHcCCCEEecCCCCchh------HHhhCCCceEEeCCCC--HHHHHHHHHHHHHCH
Confidence 932 22 347999999999999987443333 2443 67888887655 468999999999766
No 123
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.67 E-value=3.7e-06 Score=92.98 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=80.1
Q ss_pred CcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC----------------CCCCeEECCC-C--CCHHH
Q 003222 223 VKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ----------------LPPNFIKLPK-D--AYTPD 275 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~----------------lp~nv~~~~~-~--~~~pd 275 (838)
.+.+++++|+.... ..++++ +. .+++.++++|...+. +.+||.+++. . ..+++
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~ 263 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPE 263 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHH
Confidence 34566777776542 223332 22 256788888864321 3467877754 3 24668
Q ss_pred HHhhcCEEEec------CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 276 FMAASDCMLGK------IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 276 lLa~adl~It~------gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
+|+.||++|.- +..++++||+++|+|+|+.+... .++ +...+.|..+...+ .+.+.++|.+++++
T Consensus 264 ~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~------i~~~~~g~~~~~~d--~~~~~~~l~~l~~~ 334 (366)
T cd03822 264 LFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEE------VLDGGTGLLVPPGD--PAALAEAIRRLLAD 334 (366)
T ss_pred HHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhe------eeeCCCcEEEcCCC--HHHHHHHHHHHHcC
Confidence 99999999942 23358999999999999987543 333 55667788887665 46899999999876
Q ss_pred C
Q 003222 350 K 350 (838)
Q Consensus 350 ~ 350 (838)
+
T Consensus 335 ~ 335 (366)
T cd03822 335 P 335 (366)
T ss_pred h
Confidence 5
No 124
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.66 E-value=2.8e-06 Score=93.25 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=76.1
Q ss_pred EEEEEcCCCCch---hhhHHhhCCCCcEEEEeCCCCCC---------C---CCCeEECCCCCC--HHHHHhhcCEEEec-
Q 003222 225 LLILNFGGQPAG---WKLKEEYLPSGWKCLVCGASDSQ---------L---PPNFIKLPKDAY--TPDFMAASDCMLGK- 286 (838)
Q Consensus 225 ~Vlvs~Gs~~~~---~~ll~~l~~~~~~~vv~G~~~~~---------l---p~nv~~~~~~~~--~pdlLa~adl~It~- 286 (838)
.++++.|..... ..+++.....++.+++.|..... . .++|++.++.++ ++++|+.+|++|..
T Consensus 172 ~~i~~~Gr~~~~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps 251 (335)
T cd03802 172 DYLLFLGRISPEKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPI 251 (335)
T ss_pred CEEEEEEeeccccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCC
Confidence 345666766442 23344444457788888866421 1 478999998764 46889999999952
Q ss_pred ---CC-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 287 ---IG-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 287 ---gG-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
-| ..++.|||++|+|+|+....... +.++....|..++. .+.+.++|.+++.
T Consensus 252 ~~~E~~~~~~lEAma~G~PvI~~~~~~~~------e~i~~~~~g~l~~~----~~~l~~~l~~l~~ 307 (335)
T cd03802 252 LWEEPFGLVMIEAMACGTPVIAFRRGAVP------EVVEDGVTGFLVDS----VEELAAAVARADR 307 (335)
T ss_pred cccCCcchHHHHHHhcCCCEEEeCCCCch------hheeCCCcEEEeCC----HHHHHHHHHHHhc
Confidence 23 35899999999999998754332 33444446877764 5788888887754
No 125
>PLN02275 transferase, transferring glycosyl groups
Probab=98.65 E-value=6.1e-06 Score=93.00 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=64.2
Q ss_pred CCcEEEEeCCCCCC---------C-CCCeEECC-CC--CCHHHHHhhcCEEEe----cCC---hhhHHHHHHcCCcEEEE
Q 003222 246 SGWKCLVCGASDSQ---------L-PPNFIKLP-KD--AYTPDFMAASDCMLG----KIG---YGTVSEALAYKLPFVFV 305 (838)
Q Consensus 246 ~~~~~vv~G~~~~~---------l-p~nv~~~~-~~--~~~pdlLa~adl~It----~gG---~~Tv~Eal~~GvP~l~i 305 (838)
+++.++++|..+.. + -+|+.+++ +. +.+|++|+.||++|. ..| .+++.|||++|+|+|+.
T Consensus 260 ~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~ 339 (371)
T PLN02275 260 PRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAV 339 (371)
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEe
Confidence 46788888876531 1 14576654 33 467899999999994 112 35799999999999997
Q ss_pred eCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 306 RRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 306 P~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
... .+.+.++..+.|..++ + ++.+.++|.+++
T Consensus 340 ~~g------g~~eiv~~g~~G~lv~--~--~~~la~~i~~l~ 371 (371)
T PLN02275 340 SYS------CIGELVKDGKNGLLFS--S--SSELADQLLELL 371 (371)
T ss_pred cCC------ChHHHccCCCCeEEEC--C--HHHHHHHHHHhC
Confidence 632 2455677777898885 2 567888887764
No 126
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.65 E-value=3e-06 Score=95.30 Aligned_cols=128 Identities=15% Similarity=0.046 Sum_probs=83.1
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC----------------CCCCCeEEC
Q 003222 212 EVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS----------------QLPPNFIKL 267 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~----------------~lp~nv~~~ 267 (838)
.+++.++++++++ ++++.|..... ..+++. +. .+++.++++|.... .+..++.++
T Consensus 179 ~~~~~~~~~~~~~-~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (372)
T cd03792 179 YILEKYGIDPERP-YITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVL 257 (372)
T ss_pred HHHHHhCCCCCCc-EEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEE
Confidence 5677788765554 56777877652 123332 22 25678888876531 034567776
Q ss_pred CCC----CCHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhH
Q 003222 268 PKD----AYTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHW 339 (838)
Q Consensus 268 ~~~----~~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l 339 (838)
++. ..++++++++|+||..+ | ..++.||+++|+|+|+.+.....| .+.....|..++. .+.+
T Consensus 258 ~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~------~i~~~~~g~~~~~----~~~~ 327 (372)
T cd03792 258 TLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIPL------QIEDGETGFLVDT----VEEA 327 (372)
T ss_pred ecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCchh------hcccCCceEEeCC----cHHH
Confidence 664 34568999999999644 2 358999999999999977444333 3555566776642 3466
Q ss_pred HHHHHHHhhCC
Q 003222 340 KPYLERAISLK 350 (838)
Q Consensus 340 ~~~l~~ll~~~ 350 (838)
..+|.++++++
T Consensus 328 a~~i~~ll~~~ 338 (372)
T cd03792 328 AVRILYLLRDP 338 (372)
T ss_pred HHHHHHHHcCH
Confidence 77888888654
No 127
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.63 E-value=3.2e-06 Score=94.29 Aligned_cols=119 Identities=18% Similarity=0.080 Sum_probs=83.0
Q ss_pred cEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC---------C--CCCCeEECCCCC--CHHHHHhhcCE
Q 003222 224 KLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS---------Q--LPPNFIKLPKDA--YTPDFMAASDC 282 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~---------~--lp~nv~~~~~~~--~~pdlLa~adl 282 (838)
+.++++.|+.... ..++++ +. .+++.++++|.... . ++.+|++.++.+ .++++|+.+|+
T Consensus 188 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~ 267 (367)
T cd05844 188 PPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARI 267 (367)
T ss_pred CcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCE
Confidence 3456677766542 223332 22 24678888886531 1 467899888874 47789999999
Q ss_pred EEecC----------ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 283 MLGKI----------GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 283 ~It~g----------G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+|..+ -.+++.||+++|+|+|+.+... +.+.+...+.|..++..+ .+.+.++|.++++++
T Consensus 268 ~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~------~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~ 337 (367)
T cd05844 268 FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG------IPEAVEDGETGLLVPEGD--VAALAAALGRLLADP 337 (367)
T ss_pred EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC------chhheecCCeeEEECCCC--HHHHHHHHHHHHcCH
Confidence 98532 2468999999999999987432 445567778888887655 468899999998755
No 128
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.62 E-value=1.7e-06 Score=97.04 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=82.3
Q ss_pred cEEEEEcCCCCc----h-hhhHHhh--CCCCcEEEEeCCCCC-----------CCCCCeEECCCCCC----HHHHHhhcC
Q 003222 224 KLLILNFGGQPA----G-WKLKEEY--LPSGWKCLVCGASDS-----------QLPPNFIKLPKDAY----TPDFMAASD 281 (838)
Q Consensus 224 ~~Vlvs~Gs~~~----~-~~ll~~l--~~~~~~~vv~G~~~~-----------~lp~nv~~~~~~~~----~pdlLa~ad 281 (838)
+.++++.|.... + ..+++++ +..++.++++|.... .++++|++.|++.. ++++++.+|
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d 259 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVS 259 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCc
Confidence 456677776532 1 2344433 234678888886542 14678999998754 456677799
Q ss_pred EEEecC----ChhhHHHHHHcCCcEEEEe-CCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc
Q 003222 282 CMLGKI----GYGTVSEALAYKLPFVFVR-RDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY 353 (838)
Q Consensus 282 l~It~g----G~~Tv~Eal~~GvP~l~iP-~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~ 353 (838)
++|... -..++.|||++|+|+|+.. ..+. .+.++....|..++..+ .+.+.++|.++++++..+
T Consensus 260 ~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~------~eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~ 328 (359)
T PRK09922 260 ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGP------RDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKY 328 (359)
T ss_pred EEEECCcccCcChHHHHHHHcCCCEEEeCCCCCh------HHHccCCCceEEECCCC--HHHHHHHHHHHHhCcccC
Confidence 999642 2468999999999999976 3221 23455556688887665 578999999999887433
No 129
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.53 E-value=1.4e-05 Score=92.99 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=86.7
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch--h-hhHH---hhCCCCcEEEEeCCCCC-----------CCCCCeEE-CCCCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKE---EYLPSGWKCLVCGASDS-----------QLPPNFIK-LPKDA 271 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~-~ll~---~l~~~~~~~vv~G~~~~-----------~lp~nv~~-~~~~~ 271 (838)
++.+++.++++++...++++.|..... . .+++ .+...++.+++.|...+ .++.++.+ .+|..
T Consensus 268 k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~ 347 (466)
T PRK00654 268 KRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDE 347 (466)
T ss_pred HHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCH
Confidence 346788889875445567777877652 2 2333 23334678888886532 14566653 46654
Q ss_pred C-HHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 272 Y-TPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 272 ~-~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
. ++.+++.||+||.-+ |+ .+.+|||++|+|.|+....+..|.-.+...-...+.|..++..+ ++.+.++|.++
T Consensus 348 ~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~~~la~~i~~~ 425 (466)
T PRK00654 348 ALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFN--AEDLLRALRRA 425 (466)
T ss_pred HHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCC--HHHHHHHHHHH
Confidence 4 347899999999632 22 58999999999999976544444311100001226788887665 46888888888
Q ss_pred hh
Q 003222 347 IS 348 (838)
Q Consensus 347 l~ 348 (838)
++
T Consensus 426 l~ 427 (466)
T PRK00654 426 LE 427 (466)
T ss_pred HH
Confidence 75
No 130
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.50 E-value=3.1e-05 Score=89.34 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=61.2
Q ss_pred CCCCeEECCCC--CCHHHHHhhc----CEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 003222 260 LPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (838)
Q Consensus 260 lp~nv~~~~~~--~~~pdlLa~a----dl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l 329 (838)
+.++|++.++. +.++++|+.+ |+||..+ | ..++.|||++|+|+|+..... +.+.+.....|+.+
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg------~~eiv~~~~~G~lv 388 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG------PRDIIANCRNGLLV 388 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC------cHHHhcCCCcEEEe
Confidence 35667777764 4678888866 9999643 3 358999999999999987433 33445555678888
Q ss_pred ecCCCChhhHHHHHHHHhhCC
Q 003222 330 IRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+..+ ++.+.++|.++++++
T Consensus 389 ~~~d--~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 389 DVLD--LEAIASALEDALSDS 407 (439)
T ss_pred CCCC--HHHHHHHHHHHHhCH
Confidence 8766 468899999998765
No 131
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.48 E-value=1.4e-05 Score=91.24 Aligned_cols=121 Identities=15% Similarity=0.069 Sum_probs=84.1
Q ss_pred CCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC-----------CCCCCeEECCCCC--CHHHHHhhc
Q 003222 222 DVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS-----------QLPPNFIKLPKDA--YTPDFMAAS 280 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~-----------~lp~nv~~~~~~~--~~pdlLa~a 280 (838)
+.++.+++.|..... ..++++ +. .+++.++++|..+. .+.++|.+.++.+ +++++|+.|
T Consensus 220 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~a 299 (406)
T PRK15427 220 ATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDA 299 (406)
T ss_pred CCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 345667788877653 223332 22 24677888886542 1457899988874 567899999
Q ss_pred CEEEec---------CCh-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh-C
Q 003222 281 DCMLGK---------IGY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS-L 349 (838)
Q Consensus 281 dl~It~---------gG~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~-~ 349 (838)
|+||.- -|+ ++++|||++|+|+|+....+.. +.++....|+.++..+ ++.+.++|.++++ +
T Consensus 300 Dv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~------E~v~~~~~G~lv~~~d--~~~la~ai~~l~~~d 371 (406)
T PRK15427 300 DVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIP------ELVEADKSGWLVPEND--AQALAQRLAAFSQLD 371 (406)
T ss_pred CEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCch------hhhcCCCceEEeCCCC--HHHHHHHHHHHHhCC
Confidence 999953 233 5789999999999998754333 3355566788887666 5789999999987 5
Q ss_pred C
Q 003222 350 K 350 (838)
Q Consensus 350 ~ 350 (838)
+
T Consensus 372 ~ 372 (406)
T PRK15427 372 T 372 (406)
T ss_pred H
Confidence 5
No 132
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=3e-05 Score=89.58 Aligned_cols=220 Identities=12% Similarity=0.023 Sum_probs=120.5
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-C--chHHHHHHHhCCcEEEEecCchh-----HHH-Hhhhhh------
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVVSDV-V--PVACRAAADAGIRSVCVTNFSWD-----FIY-AEYVMA------ 159 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~--~~~~~aA~~lgIP~V~is~~~~~-----~i~-~~~~~~------ 159 (838)
+.......+..-+.....++++.+||+|.+.. . ..+.++|...++|.+..+-.++. ... ..+...
T Consensus 257 ~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i 336 (578)
T PRK15490 257 LLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAV 336 (578)
T ss_pred HHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhcee
Confidence 44433223334455678899999999999875 2 35777888899999765321110 000 000000
Q ss_pred ccc-----chHHHHHHHHhhccccceEEecCCCCCCCCCCceeecCcccccCCc---ChHHHHHH--hCCCCCCcEEEEE
Q 003222 160 AGH-----HHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHK---SRKEVRKE--LGIEDDVKLLILN 229 (838)
Q Consensus 160 ~~~-----~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~---~~~~~r~~--l~~~~~~~~Vlvs 229 (838)
... ....+.+.+.+.+. . .+....+++.|+......+ .+...++. .+++++. .++.+
T Consensus 337 ~~~sd~v~~s~~v~~~l~~~lg-------i-----p~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~-~vIg~ 403 (578)
T PRK15490 337 VPGVDFMSNNHCVTRHYADWLK-------L-----EAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDAD-TTIGG 403 (578)
T ss_pred EecchhhhccHHHHHHHHHHhC-------C-----CHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCC-cEEEE
Confidence 000 00001111111110 0 0122234555553321111 11123332 2333333 34555
Q ss_pred cCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEEec---C
Q 003222 230 FGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCMLGK---I 287 (838)
Q Consensus 230 ~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~It~---g 287 (838)
.|..... ..++.. +. .+++.++++|..... +.++|+++++.++++++|+.+|+||.. -
T Consensus 404 VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~E 483 (578)
T PRK15490 404 VFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYE 483 (578)
T ss_pred EEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEccccc
Confidence 5544332 223332 22 256788888865421 457899999988999999999999963 2
Q ss_pred C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC
Q 003222 288 G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD 333 (838)
Q Consensus 288 G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~ 333 (838)
| .+++.|||++|+|+|+..... +.+.++....|..++..+
T Consensus 484 Gfp~vlLEAMA~GlPVVATdvGG------~~EiV~dG~nG~LVp~~D 524 (578)
T PRK15490 484 GLPNVLIEAQMVGVPVISTPAGG------SAECFIEGVSGFILDDAQ 524 (578)
T ss_pred CccHHHHHHHHhCCCEEEeCCCC------cHHHcccCCcEEEECCCC
Confidence 3 468999999999999987433 345566777898888765
No 133
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.47 E-value=2.7e-05 Score=90.71 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=85.6
Q ss_pred hHHHHHHhCCCC-CCcEEEEEcCCCCch--hh-hHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEEC-CCC
Q 003222 210 RKEVRKELGIED-DVKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKL-PKD 270 (838)
Q Consensus 210 ~~~~r~~l~~~~-~~~~Vlvs~Gs~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------lp~nv~~~-~~~ 270 (838)
+..+++.++++. +...++++.|..... .+ +++ .+...+++++++|...+. .+.++.+. ++.
T Consensus 276 k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~ 355 (473)
T TIGR02095 276 KEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYD 355 (473)
T ss_pred HHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 346788888864 234466777777652 22 233 233345788888876421 36667654 333
Q ss_pred CC-HHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc------CcEEEEecCCCChhhH
Q 003222 271 AY-TPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY------QGGVEMIRRDLLTGHW 339 (838)
Q Consensus 271 ~~-~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~------G~g~~l~~~~~~~~~l 339 (838)
.. ++.+++.||++|.-+ |+ .+.+|||++|+|+|+....+..|. +... +.|+.++..+ ++.+
T Consensus 356 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~------v~~~~~~~~~~~G~l~~~~d--~~~l 427 (473)
T TIGR02095 356 EALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADT------VVDGDPEAESGTGFLFEEYD--PGAL 427 (473)
T ss_pred HHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccce------EecCCCCCCCCceEEeCCCC--HHHH
Confidence 22 357899999999643 32 488999999999999775544443 3333 7788887655 4688
Q ss_pred HHHHHHHhh
Q 003222 340 KPYLERAIS 348 (838)
Q Consensus 340 ~~~l~~ll~ 348 (838)
..+|.+++.
T Consensus 428 a~~i~~~l~ 436 (473)
T TIGR02095 428 LAALSRALR 436 (473)
T ss_pred HHHHHHHHH
Confidence 888888876
No 134
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.46 E-value=4.3e-06 Score=90.42 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|++.-++..+.+..|.. .|++|.+.++||.|+|||||||-.+++..+++++++ ++..++.++|.. -
T Consensus 65 ~Nlv~kA~~~l~~~~~~~--~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~---------l 131 (283)
T PRK14610 65 NNTVQRAIGLLLRHSPVR--TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALS---------V 131 (283)
T ss_pred CcHHHHHHHHHHHHhCCC--CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHH---------h
Confidence 577777777777666754 599999999999999999999999999999999996 689999999885 3
Q ss_pred ChhhHHHhhcCCCCeEEEEEecCCceeeeecc-CCCeEEEEEeC-CCCCcCCCCch
Q 003222 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEI-PSHIRFWGIDS-GIRHSVGGADY 743 (838)
Q Consensus 690 G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~-~~~~~~vi~~s-~~~~~~~~~~y 743 (838)
| .|--.+++||. + +.. .-.+..++++. +....++|+.. ++.=+ +..-|
T Consensus 132 G-aDvPffl~g~~--a-~~~-G~Ge~l~~l~~~~~~~~~vl~~p~~~~~s-T~~vy 181 (283)
T PRK14610 132 G-SDVPACLDSKT--L-FVR-GIGEDILLLPDLSLPTYVVLVAPKGKFLS-TRKVF 181 (283)
T ss_pred C-CCCcEEEECCe--E-EEE-ecccEEEECcccCCCCeEEEEECCCCccC-hHHHH
Confidence 5 58877888874 2 332 33344455532 12223566654 33322 33455
No 135
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.40 E-value=2e-06 Score=95.17 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCCch-hhhH----H---hhCCCCcEEEEeCCCCCC-----CC--CCeEECCCCCCHHHHHhhcCEEEec
Q 003222 222 DVKLLILNFGGQPAG-WKLK----E---EYLPSGWKCLVCGASDSQ-----LP--PNFIKLPKDAYTPDFMAASDCMLGK 286 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~-~~ll----~---~l~~~~~~~vv~G~~~~~-----lp--~nv~~~~~~~~~pdlLa~adl~It~ 286 (838)
+.++|.+..||.... ..++ + .+......+++.+....+ .. ..+.+. ....++|++||++|+.
T Consensus 166 ~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~---~~~~~~m~~aDlal~~ 242 (347)
T PRK14089 166 KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEIS---YDTHKALLEAEFAFIC 242 (347)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEe---ccHHHHHHhhhHHHhc
Confidence 347899999998863 1111 1 222222456666654311 11 233332 3567999999999999
Q ss_pred CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHH---HcCcEEEE-------------ecCCCChhhHHHHHHH
Q 003222 287 IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE---FYQGGVEM-------------IRRDLLTGHWKPYLER 345 (838)
Q Consensus 287 gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~---~~G~g~~l-------------~~~~~~~~~l~~~l~~ 345 (838)
+|..|+ |++.+|+|||+.- ....-|..|+++++ ..|.+-.+ -.++.+++.+.+.+.+
T Consensus 243 SGT~TL-E~al~g~P~Vv~Y-k~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~ 315 (347)
T PRK14089 243 SGTATL-EAALIGTPFVLAY-KAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE 315 (347)
T ss_pred CcHHHH-HHHHhCCCEEEEE-eCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH
Confidence 997666 9999999999944 34556788999998 44544444 2355677777777765
No 136
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.37 E-value=6.9e-05 Score=84.81 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=88.1
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC------------------CCCCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS------------------QLPPN 263 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~------------------~lp~n 263 (838)
.+..++.++++++. .++++.|..... ..++++ +. .+++.++++|.... .++.+
T Consensus 180 ~~~~~~~~~~~~~~-~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~ 258 (380)
T PRK15484 180 QPNLRQQLNISPDE-TVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDR 258 (380)
T ss_pred hHHHHHHhCCCCCC-eEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCc
Confidence 34566777775444 566777876652 223443 22 25678888875321 13567
Q ss_pred eEECCCCC--CHHHHHhhcCEEEecC----Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE-ecCCCC
Q 003222 264 FIKLPKDA--YTPDFMAASDCMLGKI----GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM-IRRDLL 335 (838)
Q Consensus 264 v~~~~~~~--~~pdlLa~adl~It~g----G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l-~~~~~~ 335 (838)
+.++++.+ .++++|+.||++|..+ |+ .++.|||++|+|+|+....+ +.+.++....|..+ +..+
T Consensus 259 v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg------~~Eiv~~~~~G~~l~~~~d-- 330 (380)
T PRK15484 259 CIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG------ITEFVLEGITGYHLAEPMT-- 330 (380)
T ss_pred EEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC------cHhhcccCCceEEEeCCCC--
Confidence 88888764 5779999999999643 32 57889999999999987533 23445555668644 4444
Q ss_pred hhhHHHHHHHHhhCC
Q 003222 336 TGHWKPYLERAISLK 350 (838)
Q Consensus 336 ~~~l~~~l~~ll~~~ 350 (838)
++.+.++|.++++++
T Consensus 331 ~~~la~~I~~ll~d~ 345 (380)
T PRK15484 331 SDSIISDINRTLADP 345 (380)
T ss_pred HHHHHHHHHHHHcCH
Confidence 578999999999765
No 137
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.36 E-value=6.2e-05 Score=86.29 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=71.8
Q ss_pred EEEEcCCCCch--h-hhHHh---hC--CCCcEEEEeCCCCCC---------CCCCeE-ECCCCCCHHHHHhhcCEEEec-
Q 003222 226 LILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDSQ---------LPPNFI-KLPKDAYTPDFMAASDCMLGK- 286 (838)
Q Consensus 226 Vlvs~Gs~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~---------lp~nv~-~~~~~~~~pdlLa~adl~It~- 286 (838)
++++.|..... . .++++ +. .++++++++|..+.. ++-++. +.++ ....++++.+|+||.-
T Consensus 230 ~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~-~~~~~~~~~~DvFv~pS 308 (462)
T PLN02846 230 GAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGR-DHADPLFHDYKVFLNPS 308 (462)
T ss_pred EEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCC-CCHHHHHHhCCEEEECC
Confidence 56778877653 1 23332 22 256788888877532 222333 3454 3334799999999964
Q ss_pred ---CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 287 ---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 287 ---gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+-.+++.|||++|+|+|+...+. . +.+...+.|..++ + .+.+..++.+++.++
T Consensus 309 ~~Et~g~v~lEAmA~G~PVVa~~~~~-~------~~v~~~~ng~~~~--~--~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 309 TTDVVCTTTAEALAMGKIVVCANHPS-N------EFFKQFPNCRTYD--D--GKGFVRATLKALAEE 364 (462)
T ss_pred CcccchHHHHHHHHcCCcEEEecCCC-c------ceeecCCceEecC--C--HHHHHHHHHHHHccC
Confidence 33358999999999999987432 2 3455556665552 2 467888888888643
No 138
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.36 E-value=5e-06 Score=78.23 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=81.2
Q ss_pred cEEEEEcCCCCch--------hhhHHhhCCCCc--EEEEeCCCCCC-------C--CCC--eEECCCCCCHHHHHhhcCE
Q 003222 224 KLLILNFGGQPAG--------WKLKEEYLPSGW--KCLVCGASDSQ-------L--PPN--FIKLPKDAYTPDFMAASDC 282 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~--------~~ll~~l~~~~~--~~vv~G~~~~~-------l--p~n--v~~~~~~~~~pdlLa~adl 282 (838)
..++|+.|+.... .+++++|..-++ .++-.|++..- . -.. +..+.|.+.+.+.++.||+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl 83 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL 83 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE
Confidence 4789999988763 123334444444 44556876421 1 223 3344666777899999999
Q ss_pred EEecCChhhHHHHHHcCCcEEEEeCCC--CCChHHHHHHHHHcCcEEEEecCCC
Q 003222 283 MLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEPFLRNMLEFYQGGVEMIRRDL 334 (838)
Q Consensus 283 ~It~gG~~Tv~Eal~~GvP~l~iP~~~--~~EQ~~Na~~l~~~G~g~~l~~~~~ 334 (838)
+|+|+|.||++|.+..|+|.|+++... .+.|...|+.|++.|+-......++
T Consensus 84 VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~L 137 (170)
T KOG3349|consen 84 VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPSTL 137 (170)
T ss_pred EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccch
Confidence 999999999999999999999998642 3457789999999999988887665
No 139
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.35 E-value=2.4e-05 Score=87.18 Aligned_cols=293 Identities=19% Similarity=0.194 Sum_probs=154.4
Q ss_pred eecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccc-cChHHHHHHHHHHh
Q 003222 21 YVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-VDRLASLEKYSETA 99 (838)
Q Consensus 21 ~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~l~~~~~~~ 99 (838)
.+.|.-.|-. -+..|+++|+++..++.|++-....+..... + . .++.. .++ +.....+.++..+
T Consensus 3 i~AGE~SGD~-~ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~-----~--~-l~d~~-----~lsvmG~~Evl~~l~~~- 67 (373)
T PF02684_consen 3 ISAGEASGDL-HGARLIRALKARDPDIEFYGVGGPRMQAAGV-----E--S-LFDME-----ELSVMGFVEVLKKLPKL- 67 (373)
T ss_pred EEeeCccHHH-HHHHHHHHHHhhCCCcEEEEEechHHHhCCC-----c--e-ecchH-----HhhhccHHHHHHHHHHH-
Confidence 3455555533 3567889999998888876543222211111 0 0 01110 011 1122234444433
Q ss_pred hccHHHHHHHHHHHHhcCCCcEEE-ECCCchHHHHHH---HhCCc--EEEE-ecCchhHHHHhhhhhcccchHHHHHHHH
Q 003222 100 VAPRKSILKDEVEWLNSIKADLVV-SDVVPVACRAAA---DAGIR--SVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (838)
Q Consensus 100 ~~~~~~~l~~~~~~L~~~kPDlVV-sD~~~~~~~aA~---~lgIP--~V~i-s~~~~~~i~~~~~~~~~~~~~~i~~~l~ 172 (838)
....++..+++++.+||+|| .|++-....+|+ ..|+| ++.+ +.-.|. ++... +..+.
T Consensus 68 ----~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWA--Wr~~R----------~~~i~ 131 (373)
T PF02684_consen 68 ----KRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWA--WRPGR----------AKKIK 131 (373)
T ss_pred ----HHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceee--eCccH----------HHHHH
Confidence 23456668889999999998 788766666665 45777 6554 443342 01100 01111
Q ss_pred hhccccceEE-ecCCCCC---CCCC-CceeecCcccc-cCCcChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHH
Q 003222 173 EDYSHCEFLI-RLPGYCP---MPAF-RDVIDVPLVVR-RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKE 241 (838)
Q Consensus 173 ~~y~~~d~ll-~~~~~~~---~p~~-~~v~~ip~~~~-~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~ 241 (838)
+. +|.++ -+|+... .... ..+++-|.... .+...+...++.+ +++++++|.+.-||.... . .+++
T Consensus 132 ~~---~D~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 132 KY---VDHLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred HH---HhheeECCcccHHHHhccCCCeEEECCcchhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 11 12222 1333210 0000 12334444333 2334456677777 788999999999998753 1 1222
Q ss_pred ---hhC--CCCcEEEEeCCCCC--C--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 242 ---EYL--PSGWKCLVCGASDS--Q--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 242 ---~l~--~~~~~~vv~G~~~~--~--------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.+. .++.++++...... . .+.++.+.-.....-++|++||+.++.+| +.+.|++.+|+|||++-
T Consensus 208 aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~SG-TaTLE~Al~g~P~Vv~Y 286 (373)
T PF02684_consen 208 AAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAASG-TATLEAALLGVPMVVAY 286 (373)
T ss_pred HHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcCC-HHHHHHHHhCCCEEEEE
Confidence 122 25667766533221 1 12333222112234589999999999999 88999999999999987
Q ss_pred CCCCCChHHHHHHHHHcCcEEEE------------ecCCCChhhHHHHHHHHhhCC
Q 003222 307 RDYFNEEPFLRNMLEFYQGGVEM------------IRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 307 ~~~~~EQ~~Na~~l~~~G~g~~l------------~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.... =....++++.+..+--.. -.++.+++.+...+.+++.++
T Consensus 287 k~~~-lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~ 341 (373)
T PF02684_consen 287 KVSP-LTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENP 341 (373)
T ss_pred cCcH-HHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCH
Confidence 5332 223577888765542111 122345556666666666544
No 140
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.34 E-value=6.8e-05 Score=85.55 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=64.2
Q ss_pred hhHHhh--CCCCcEEEEeCCCCCCCCCCeEECCCCCC---HHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCC
Q 003222 238 KLKEEY--LPSGWKCLVCGASDSQLPPNFIKLPKDAY---TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 238 ~ll~~l--~~~~~~~vv~G~~~~~lp~nv~~~~~~~~---~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~ 308 (838)
.+++++ +.+++.++++|...+..+.++..+++..+ ++++|+.+|+||.-+ -.+++.|||++|+|+|+.+..
T Consensus 260 ~li~A~~~l~~~~~L~ivG~g~~~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~g 339 (405)
T PRK10125 260 QLVREMMALGDKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSD 339 (405)
T ss_pred HHHHHHHhCCCCeEEEEEcCCCcccccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCC
Confidence 344443 23567788888754444567887777643 457889999999632 335899999999999999854
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHH
Q 003222 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKP 341 (838)
Q Consensus 309 ~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~ 341 (838)
+. .+.+ ..+.|..++..|. +.+..
T Consensus 340 G~------~Eiv-~~~~G~lv~~~d~--~~La~ 363 (405)
T PRK10125 340 AA------REVL-QKSGGKTVSEEEV--LQLAQ 363 (405)
T ss_pred Ch------HHhE-eCCcEEEECCCCH--HHHHh
Confidence 32 2223 3457988987764 45554
No 141
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.34 E-value=6.3e-06 Score=87.48 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHH-hCCCCC---CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhc
Q 003222 610 AAYVAGTILVLMTE-LGVRFE---DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIV 685 (838)
Q Consensus 610 ~~y~~g~i~~~~~~-~g~~~~---~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~ 685 (838)
.|.+.-++..+.+. .+.... .|+++.+..+||.|+|||||||-.+|+..+++++++.++++.++.++|.+.
T Consensus 61 ~NLv~kA~~~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~l----- 135 (257)
T PRK04181 61 ENIIYKAYQELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKV----- 135 (257)
T ss_pred CcHHHHHHHHHHHhccccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-----
Confidence 35554445555432 332121 489999999999999999999999999999999999999999999998742
Q ss_pred CCCCChhhHHHhhcC-CCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCCCCch
Q 003222 686 GAPCGVMDQMASACG-EANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADY 743 (838)
Q Consensus 686 G~~~G~mDq~a~~~G-~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~~~~y 743 (838)
| .|---+++| +. ++. ..-.+..++++.+.. .++|++.++.=++ ..-|
T Consensus 136 ----G-aDvPffl~~~~~--a~~--~G~Ge~l~~l~~~~~-~~~lv~P~~~vsT-~~vy 183 (257)
T PRK04181 136 ----G-ADVAFFISGYKS--ANV--SGIGEIVEEFEEEIL-NLEIFTPNIFCST-KAVY 183 (257)
T ss_pred ----C-CCccEEecCCce--EEE--EeeCCeeEECCCCCC-eEEEECCCCCcCH-HHHH
Confidence 2 355556666 42 222 223444455542222 2677776554433 2345
No 142
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.33 E-value=1.5e-05 Score=81.62 Aligned_cols=52 Identities=23% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCCeEECCCC---CCHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCC
Q 003222 261 PPNFIKLPKD---AYTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNE 312 (838)
Q Consensus 261 p~nv~~~~~~---~~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~E 312 (838)
..||.+.++. +.++.+++.||++|+... .++++||+++|+|+|+.+.+...|
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e 218 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPE 218 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcce
Confidence 3566666653 233456667999998775 579999999999999988665554
No 143
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=4.8e-05 Score=83.16 Aligned_cols=296 Identities=21% Similarity=0.204 Sum_probs=163.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccc-cChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-VDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~l~~ 94 (838)
++|+ .+.|.-.|-+- ...|.++|+++-.+|.|++-..+.+.....+ . .++.. .++ +.....+.+
T Consensus 2 ~ki~-i~AGE~SGDll-Ga~LikaLk~~~~~~efvGvgG~~m~aeG~~-------s-l~~~~-----elsvmGf~EVL~~ 66 (381)
T COG0763 2 LKIA-LSAGEASGDLL-GAGLIKALKARYPDVEFVGVGGEKMEAEGLE-------S-LFDME-----ELSVMGFVEVLGR 66 (381)
T ss_pred ceEE-EEecccchhhH-HHHHHHHHHhhCCCeEEEEeccHHHHhccCc-------c-ccCHH-----HHHHhhHHHHHHH
Confidence 3453 35666666443 4467888988855888876543222211111 0 01110 011 112223333
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEE-ECCCchHHHHHHH---hC--CcEEEE-ecCchhHHHHhhhhhcccchHHH
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVV-SDVVPVACRAAAD---AG--IRSVCV-TNFSWDFIYAEYVMAAGHHHRSI 167 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVV-sD~~~~~~~aA~~---lg--IP~V~i-s~~~~~~i~~~~~~~~~~~~~~i 167 (838)
+.... ...++..+.+...+||++| .|.+-.....++. .+ +|.|-+ +.-.|. |+...
T Consensus 67 lp~ll-----k~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWA--Wr~~R---------- 129 (381)
T COG0763 67 LPRLL-----KIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWA--WRPKR---------- 129 (381)
T ss_pred HHHHH-----HHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceee--echhh----------
Confidence 33322 2345567778899999998 6876566655543 45 888765 333332 01100
Q ss_pred HHHHHhhccccceEEe-cCCCCCC-CCC-CceeecC--cccc-cCCcChHHHHHHhCCCCCCcEEEEEcCCCCchh----
Q 003222 168 VWQIAEDYSHCEFLIR-LPGYCPM-PAF-RDVIDVP--LVVR-RLHKSRKEVRKELGIEDDVKLLILNFGGQPAGW---- 237 (838)
Q Consensus 168 ~~~l~~~y~~~d~ll~-~~~~~~~-p~~-~~v~~ip--~~~~-~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~---- 237 (838)
...+. ..+|.++. +|+.... ..+ ..++++| .... +...+++.+|+.++++.+.+++.+.-||.....
T Consensus 130 a~~i~---~~~D~lLailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~ 206 (381)
T COG0763 130 AVKIA---KYVDHLLAILPFEPAFYDKFGLPCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLL 206 (381)
T ss_pred HHHHH---HHhhHeeeecCCCHHHHHhcCCCeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHH
Confidence 00111 11233332 3332100 000 1133343 3322 245678889999999999999999999987631
Q ss_pred h-hHH---hhC--CCCcEEEEeCCCCC-C------C-----CCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcC
Q 003222 238 K-LKE---EYL--PSGWKCLVCGASDS-Q------L-----PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (838)
Q Consensus 238 ~-ll~---~l~--~~~~~~vv~G~~~~-~------l-----p~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~G 299 (838)
. +.+ .+. .++.++++.-.+.. . + ..++.+.+. .-.+.|++||+.+..+| +.+.|++.+|
T Consensus 207 ~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~aD~al~aSG-T~tLE~aL~g 283 (381)
T COG0763 207 PPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDG--EKRKAFAAADAALAASG-TATLEAALAG 283 (381)
T ss_pred HHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCc--hHHHHHHHhhHHHHhcc-HHHHHHHHhC
Confidence 1 111 222 25667776543331 0 1 123334332 22489999999999999 7889999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEE------------EecCCCChhhHHHHHHHHhhCC
Q 003222 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVE------------MIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 300 vP~l~iP~~~~~EQ~~Na~~l~~~G~g~~------------l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+|||+.-....-+ ...++++.+..+.-. +-.++.+++.+..++..++.+.
T Consensus 284 ~P~Vv~Yk~~~it-~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~ 345 (381)
T COG0763 284 TPMVVAYKVKPIT-YFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNG 345 (381)
T ss_pred CCEEEEEeccHHH-HHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcCh
Confidence 9999987543322 356677766655321 1124566888889998888776
No 144
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.31 E-value=9e-05 Score=83.52 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=84.1
Q ss_pred ChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhh--CCCCcEEEEeCCCCC--C-----------C---CCCeEEC
Q 003222 209 SRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY--LPSGWKCLVCGASDS--Q-----------L---PPNFIKL 267 (838)
Q Consensus 209 ~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l--~~~~~~~vv~G~~~~--~-----------l---p~nv~~~ 267 (838)
.....++.++++++.+ ++++.|..... ..+++++ +.+++.++++|.... . + ..++..+
T Consensus 187 ~~~~~~~~~~~~~~~~-~i~~~Grl~~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 265 (388)
T TIGR02149 187 DGNVVLDRYGIDRSRP-YILFVGRITRQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWI 265 (388)
T ss_pred chHHHHHHhCCCCCce-EEEEEcccccccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEe
Confidence 3456677788764544 56677776642 2334432 234555555543221 0 1 1245544
Q ss_pred -CCC--CCHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh----
Q 003222 268 -PKD--AYTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT---- 336 (838)
Q Consensus 268 -~~~--~~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~---- 336 (838)
++. +.++++|++||++|.-+ ...++.||+++|+|+|+.+... +.+.++..+.|..++..+.+.
T Consensus 266 ~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~------~~e~i~~~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 266 NKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGG------IPEVVVDGETGFLVPPDNSDADGFQ 339 (388)
T ss_pred cCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCC------HHHHhhCCCceEEcCCCCCcccchH
Confidence 333 24678999999999642 2357899999999999987432 344566667798887665421
Q ss_pred hhHHHHHHHHhhCC
Q 003222 337 GHWKPYLERAISLK 350 (838)
Q Consensus 337 ~~l~~~l~~ll~~~ 350 (838)
+.+.++|.++++++
T Consensus 340 ~~l~~~i~~l~~~~ 353 (388)
T TIGR02149 340 AELAKAINILLADP 353 (388)
T ss_pred HHHHHHHHHHHhCH
Confidence 57888888887765
No 145
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.30 E-value=3.3e-05 Score=85.26 Aligned_cols=117 Identities=15% Similarity=0.010 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCch---hhhHHh---hCC--CCcEEEEeCCCCCC------------CCCCeEECCCC--CCHHHHHhhcC
Q 003222 224 KLLILNFGGQPAG---WKLKEE---YLP--SGWKCLVCGASDSQ------------LPPNFIKLPKD--AYTPDFMAASD 281 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~---~~ll~~---l~~--~~~~~vv~G~~~~~------------lp~nv~~~~~~--~~~pdlLa~ad 281 (838)
+.++++.|+.... ..+++. +.. .++.++++|..... .+.||++.++. ..++++|+.||
T Consensus 195 ~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 274 (365)
T cd03809 195 RPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGAR 274 (365)
T ss_pred CCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhh
Confidence 3466777877642 223332 222 24677778865421 46789998887 35668999999
Q ss_pred EEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 282 CMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 282 l~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++|.. +..+++.||+++|+|+|+.......|. +. ..|..+...+ .+.+.++|.++++++
T Consensus 275 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~------~~--~~~~~~~~~~--~~~~~~~i~~l~~~~ 337 (365)
T cd03809 275 AFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEV------AG--DAALYFDPLD--PEALAAAIERLLEDP 337 (365)
T ss_pred hhcccchhccCCCCHHHHhcCCCcEEecCCCCccce------ec--CceeeeCCCC--HHHHHHHHHHHhcCH
Confidence 99853 233589999999999999776555544 22 2455666554 468889999988765
No 146
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.30 E-value=0.00017 Score=80.02 Aligned_cols=125 Identities=21% Similarity=0.192 Sum_probs=78.0
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhh--CCCCcEEEEeCCCCC------------CCCCCeEECCCCCC--
Q 003222 212 EVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY--LPSGWKCLVCGASDS------------QLPPNFIKLPKDAY-- 272 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l--~~~~~~~vv~G~~~~------------~lp~nv~~~~~~~~-- 272 (838)
+.++.++..+ .+. +++.|..... ..+++++ +..++.++++|.... .+.++|++.+++..
T Consensus 183 ~~~~~~~~~~-~~~-i~~~G~~~~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~ 260 (363)
T cd04955 183 EILKKYGLEP-GRY-YLLVGRIVPENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQE 260 (363)
T ss_pred hhHHhcCCCC-CcE-EEEEecccccCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHH
Confidence 3445555543 333 4567876653 2233332 233677888886521 13578999888743
Q ss_pred HHHHHhhcCEEEecC----Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 273 TPDFMAASDCMLGKI----GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 273 ~pdlLa~adl~It~g----G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
+.+++..+|+++..+ |+ +++.|||++|+|+|+.......|. ++. .|..++..+ .+.++|.+++
T Consensus 261 ~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~------~~~--~g~~~~~~~----~l~~~i~~l~ 328 (363)
T cd04955 261 LLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREV------LGD--KAIYFKVGD----DLASLLEELE 328 (363)
T ss_pred HHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcccee------ecC--CeeEecCch----HHHHHHHHHH
Confidence 457888899998643 22 479999999999999876544443 222 344454333 1788888888
Q ss_pred hCC
Q 003222 348 SLK 350 (838)
Q Consensus 348 ~~~ 350 (838)
+++
T Consensus 329 ~~~ 331 (363)
T cd04955 329 ADP 331 (363)
T ss_pred hCH
Confidence 765
No 147
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.27 E-value=0.0001 Score=85.70 Aligned_cols=226 Identities=15% Similarity=0.147 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCCcEEE-ECCCchHHHHH---HHhCC--cEEEE-ecCchhHHHHhhhhhcccchHHHHHHHHhhcccc
Q 003222 106 ILKDEVEWLNSIKADLVV-SDVVPVACRAA---ADAGI--RSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHC 178 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVV-sD~~~~~~~aA---~~lgI--P~V~i-s~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~ 178 (838)
..++..+.+++.+||+|| .|++-....+| +..|+ |++.+ +.--|. ++... ...+ .+. .
T Consensus 298 ~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWA--WR~~R------ikki----~k~---v 362 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWA--WRPKR------KTIL----EKY---L 362 (608)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcccee--eCcch------HHHH----HHH---h
Confidence 456667888999999999 58755555444 45675 98765 333332 01100 0111 111 1
Q ss_pred ceEE-ecCCCCC---CCCC-CceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch-hh----hHHh----h
Q 003222 179 EFLI-RLPGYCP---MPAF-RDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG-WK----LKEE----Y 243 (838)
Q Consensus 179 d~ll-~~~~~~~---~p~~-~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~~----ll~~----l 243 (838)
|.++ -+|+..+ .... ...++-|..... ...++++.++.++++++.++|.+.-||.... .. ++++ .
T Consensus 363 D~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~ 442 (608)
T PRK01021 363 DLLLLILPFEQNLFKDSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASS 442 (608)
T ss_pred hhheecCccCHHHHHhcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111 1232110 0000 122333443321 2445677889999987889999999998763 11 1221 2
Q ss_pred CCCCcEEEEeCCCCC--C-----C-C---CCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCC
Q 003222 244 LPSGWKCLVCGASDS--Q-----L-P---PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNE 312 (838)
Q Consensus 244 ~~~~~~~vv~G~~~~--~-----l-p---~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~E 312 (838)
+..+.++++...... + + . .++.++.- ..-.++|++||+.++.+| +.+.|++.+|+|||++-....-
T Consensus 443 l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~-~~~~~~m~aaD~aLaaSG-TaTLEaAL~g~PmVV~YK~s~L- 519 (608)
T PRK01021 443 LASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPS-QFRYELMRECDCALAKCG-TIVLETALNQTPTIVTCQLRPF- 519 (608)
T ss_pred hccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecC-cchHHHHHhcCeeeecCC-HHHHHHHHhCCCEEEEEecCHH-
Confidence 223456665432221 1 1 1 12333311 113589999999999999 7899999999999998754322
Q ss_pred hHHHHHHHHHc------------CcE---EEEe-cCCCChhhHHHHHHHHhhCC
Q 003222 313 EPFLRNMLEFY------------QGG---VEMI-RRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 313 Q~~Na~~l~~~------------G~g---~~l~-~~~~~~~~l~~~l~~ll~~~ 350 (838)
-...++++.+. |-. ..+. .++.+++++.+.+ +++.++
T Consensus 520 ty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~ 572 (608)
T PRK01021 520 DTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTS 572 (608)
T ss_pred HHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCH
Confidence 13466777661 111 1121 3456677787775 666554
No 148
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.2e-05 Score=88.36 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=75.0
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHhhhcCCCCChhhHHHhhcCCCCeE
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDL----ALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~el----a~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~ 705 (838)
.||++..+|++|.|+|||.|+-+.....+|+....|.....+.+ .....+.|. +.-.-.|++||....|-|..+-
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQ-ilTTGGGWQDQ~G~im~GIK~g 768 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQ-ILTTGGGWQDQCGAIMEGIKKG 768 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHH-HhhcCCchhhhccchhhhhhhc
Confidence 69999999999999999999998888888999988875554433 334445774 4567889999998888774321
Q ss_pred EEEEec---CCce-eeeeccCC------CeEEEEEeCCCCC
Q 003222 706 LAMVCQ---PAEL-LGVVEIPS------HIRFWGIDSGIRH 736 (838)
Q Consensus 706 l~~d~~---~~~~-~~~v~~~~------~~~~vi~~s~~~~ 736 (838)
.|+ +..+ .+.+.+|+ +-++++++||+.|
T Consensus 769 ---r~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKTR 806 (948)
T KOG4644|consen 769 ---RCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKTR 806 (948)
T ss_pred ---cchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCchH
Confidence 232 2222 24666663 4568999999987
No 149
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.22 E-value=5.3e-05 Score=86.13 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCcEEEEeCCCCCC------CCCCeEECCCCCCHHHHHhhcCEEEe--c--CCh-hhHHHHHHcCCcEEEEeCCCCCChH
Q 003222 246 SGWKCLVCGASDSQ------LPPNFIKLPKDAYTPDFMAASDCMLG--K--IGY-GTVSEALAYKLPFVFVRRDYFNEEP 314 (838)
Q Consensus 246 ~~~~~vv~G~~~~~------lp~nv~~~~~~~~~pdlLa~adl~It--~--gG~-~Tv~Eal~~GvP~l~iP~~~~~EQ~ 314 (838)
+++.++++|..... ..+||++.|++++++.+|+.||++|. . .|. +.+.|||++|+|+|+.+.. .+.
T Consensus 258 p~~~l~ivG~g~~~~~~~l~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~--~~~- 334 (397)
T TIGR03087 258 PAAEFYIVGAKPSPAVRALAALPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA--AEG- 334 (397)
T ss_pred CCcEEEEECCCChHHHHHhccCCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc--ccc-
Confidence 57788888876432 35689999999889999999999994 2 343 3699999999999998732 221
Q ss_pred HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 315 FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 315 ~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
..+..|.|+.+. . +++.+.++|.++++++
T Consensus 335 ----i~~~~~~g~lv~-~--~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 335 ----IDALPGAELLVA-A--DPADFAAAILALLANP 363 (397)
T ss_pred ----ccccCCcceEeC-C--CHHHHHHHHHHHHcCH
Confidence 112346677664 3 3678999999998765
No 150
>PRK14099 glycogen synthase; Provisional
Probab=98.19 E-value=0.00037 Score=81.40 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=81.4
Q ss_pred HHHHHHhCCCCC-CcEEEEEcCCCCch--hh-hHH---hhCCCCcEEEEeCCCCCC-----------CCCCe-EECCCCC
Q 003222 211 KEVRKELGIEDD-VKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNF-IKLPKDA 271 (838)
Q Consensus 211 ~~~r~~l~~~~~-~~~Vlvs~Gs~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------lp~nv-~~~~~~~ 271 (838)
+.+++.++++.+ ...++.+.|..... .+ +++ .+...+..+++.|...+. .+.++ .+++|.+
T Consensus 281 ~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~ 360 (485)
T PRK14099 281 AALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDE 360 (485)
T ss_pred HHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCH
Confidence 467788888643 23455566766542 22 233 233346788888865421 35566 5778877
Q ss_pred CHHHHH-hhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHH-HHHH--cCcEEEEecCCCChhhHHHHH
Q 003222 272 YTPDFM-AASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRN-MLEF--YQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 ~~pdlL-a~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~-~l~~--~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++.+| +.||+||.-+ | ..+.+|||++|+|.|+....+..|.-.... ..+. .+.|..++..+ ++.+.++|
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d--~~~La~ai 438 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVT--ADALAAAL 438 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCC--HHHHHHHH
Confidence 778776 5799999632 2 258899999998777765434334211110 0011 15688887765 46888888
Q ss_pred HHH
Q 003222 344 ERA 346 (838)
Q Consensus 344 ~~l 346 (838)
.++
T Consensus 439 ~~a 441 (485)
T PRK14099 439 RKT 441 (485)
T ss_pred HHH
Confidence 873
No 151
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.19 E-value=0.0013 Score=79.50 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=78.6
Q ss_pred HHHHhCC--CCCCcEEEEEcCCCCch---hhhHHhh-----CCCCcEEEEeCCCCC-----------------------C
Q 003222 213 VRKELGI--EDDVKLLILNFGGQPAG---WKLKEEY-----LPSGWKCLVCGASDS-----------------------Q 259 (838)
Q Consensus 213 ~r~~l~~--~~~~~~Vlvs~Gs~~~~---~~ll~~l-----~~~~~~~vv~G~~~~-----------------------~ 259 (838)
.++.+|+ +++++ ++++.|..... ..+++++ +..+..++++|.... .
T Consensus 538 ~~~~~G~l~d~~kp-iIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~g 616 (784)
T TIGR02470 538 NDEHYGYLKDPNKP-IIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQ 616 (784)
T ss_pred HHHHhCCCCCCCCc-EEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhC
Confidence 3456664 34555 56777877653 2334432 223456666654210 0
Q ss_pred CCCCeEECCCC---CCHHHHHh----hcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE
Q 003222 260 LPPNFIKLPKD---AYTPDFMA----ASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE 328 (838)
Q Consensus 260 lp~nv~~~~~~---~~~pdlLa----~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~ 328 (838)
+.++|.++++. ..++++++ .+|+||.-+ -..|+.|||+||+|+|+....+ ..+.++....|..
T Consensus 617 L~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG------~~EiV~dg~tGfL 690 (784)
T TIGR02470 617 LHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG------PLEIIQDGVSGFH 690 (784)
T ss_pred CCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC------HHHHhcCCCcEEE
Confidence 35678888764 23455654 257999643 2369999999999999986433 3445666667988
Q ss_pred EecCCCChhhHHHHHHHHh
Q 003222 329 MIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 329 l~~~~~~~~~l~~~l~~ll 347 (838)
++..+ ++.+.++|.+++
T Consensus 691 Vdp~D--~eaLA~aL~~ll 707 (784)
T TIGR02470 691 IDPYH--GEEAAEKIVDFF 707 (784)
T ss_pred eCCCC--HHHHHHHHHHHH
Confidence 98766 467888888776
No 152
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.16 E-value=0.00069 Score=76.19 Aligned_cols=216 Identities=15% Similarity=0.109 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCCCcEEEECC----CchHHHHHHHhCCcEEEEec--Cchh---HHHHhhhhhcccchHHHHHHHHh-hc
Q 003222 106 ILKDEVEWLNSIKADLVVSDV----VPVACRAAADAGIRSVCVTN--FSWD---FIYAEYVMAAGHHHRSIVWQIAE-DY 175 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~----~~~~~~aA~~lgIP~V~is~--~~~~---~i~~~~~~~~~~~~~~i~~~l~~-~y 175 (838)
.+....+++++.+||+|++.. ...+.++|..++||++.+.. .++. ...+. +..++.. .+
T Consensus 81 ~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~~~~eE~~r~-----------~i~~la~l~f 149 (365)
T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTEGAIDESIRH-----------AITKLSHLHF 149 (365)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCCCCchHHHHH-----------HHHHHHhhcc
Confidence 344557788999999999654 33678899999999997622 2221 11111 1111110 00
Q ss_pred ccc----ceEEecCCCCCCCCCCceeecCcccc---cCCcChHHHHHHhCCCCCCcEEEEEcCCCC--c---h---hhhH
Q 003222 176 SHC----EFLIRLPGYCPMPAFRDVIDVPLVVR---RLHKSRKEVRKELGIEDDVKLLILNFGGQP--A---G---WKLK 240 (838)
Q Consensus 176 ~~~----d~ll~~~~~~~~p~~~~v~~ip~~~~---~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~--~---~---~~ll 240 (838)
... +.++.. ..+ +....+++.+.+.. .....++++.+.++++.++++|++.+-... . . ..++
T Consensus 150 ~~t~~~~~~L~~e--g~~-~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li 226 (365)
T TIGR03568 150 VATEEYRQRVIQM--GED-PDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELL 226 (365)
T ss_pred CCCHHHHHHHHHc--CCC-CCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHH
Confidence 000 001100 000 11111233333221 112235677788888655678777774322 1 1 1233
Q ss_pred HhhCC--CCcEEEEeC--CCCCC--------C--CCCeEECCCCCC--HHHHHhhcCEEEecCChhhHHHHHHcCCcEEE
Q 003222 241 EEYLP--SGWKCLVCG--ASDSQ--------L--PPNFIKLPKDAY--TPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (838)
Q Consensus 241 ~~l~~--~~~~~vv~G--~~~~~--------l--p~nv~~~~~~~~--~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~ 304 (838)
+++.. ..+.++... +.... . .+|+.+.+..++ +..+|+.|+++||-++. ++.||.++|+|+|.
T Consensus 227 ~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSg-gi~EA~~lg~Pvv~ 305 (365)
T TIGR03568 227 KALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSS-GIIEAPSFGVPTIN 305 (365)
T ss_pred HHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcChh-HHHhhhhcCCCEEe
Confidence 33322 234333322 11110 1 467887765443 33788899999998853 44999999999998
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEE-EecCCCChhhHHHHHHHHhh
Q 003222 305 VRRDYFNEEPFLRNMLEFYQGGVE-MIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 305 iP~~~~~EQ~~Na~~l~~~G~g~~-l~~~~~~~~~l~~~l~~ll~ 348 (838)
+. ..+| ..+.|..+. +. ..++.+.+++.++++
T Consensus 306 l~--~R~e-------~~~~g~nvl~vg---~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 306 IG--TRQK-------GRLRADSVIDVD---PDKEEIVKAIEKLLD 338 (365)
T ss_pred ec--CCch-------hhhhcCeEEEeC---CCHHHHHHHHHHHhC
Confidence 85 2221 223444433 42 235677888888543
No 153
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.13 E-value=0.00014 Score=84.81 Aligned_cols=138 Identities=20% Similarity=0.132 Sum_probs=84.9
Q ss_pred hHHHHHHhCCC-CCCcEEEEEcCCCCch--hh-hHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEEC-CCC
Q 003222 210 RKEVRKELGIE-DDVKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKL-PKD 270 (838)
Q Consensus 210 ~~~~r~~l~~~-~~~~~Vlvs~Gs~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------lp~nv~~~-~~~ 270 (838)
++.+++.++++ .+...++++.|..... .. +++ .+...++.+++.|...+. .+.|+.++ ++.
T Consensus 281 k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 360 (476)
T cd03791 281 KAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYD 360 (476)
T ss_pred HHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 34577888874 2333466777777652 22 222 233345778888865421 35777643 444
Q ss_pred CC-HHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHH
Q 003222 271 AY-TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLER 345 (838)
Q Consensus 271 ~~-~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ 345 (838)
.. ++.+++.||+++..+ -..+.+||+++|+|+|+....+..|.-.+...-.+.|.|..++..+ ++.+..+|.+
T Consensus 361 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~--~~~l~~~i~~ 438 (476)
T cd03791 361 EALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYN--ADALLAALRR 438 (476)
T ss_pred HHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCC--HHHHHHHHHH
Confidence 33 347889999999532 2257899999999999877555544311111011244788887665 4688888888
Q ss_pred HhhC
Q 003222 346 AISL 349 (838)
Q Consensus 346 ll~~ 349 (838)
+++.
T Consensus 439 ~l~~ 442 (476)
T cd03791 439 ALAL 442 (476)
T ss_pred HHHH
Confidence 8753
No 154
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.10 E-value=5.6e-05 Score=84.10 Aligned_cols=117 Identities=17% Similarity=0.063 Sum_probs=82.2
Q ss_pred EEEEcCCCCch---hhhHHhhCCCCcEEEEeCCCCCC------CCCCeEECCCCCC--HHHHHhhcCEEEec--CCh-hh
Q 003222 226 LILNFGGQPAG---WKLKEEYLPSGWKCLVCGASDSQ------LPPNFIKLPKDAY--TPDFMAASDCMLGK--IGY-GT 291 (838)
Q Consensus 226 Vlvs~Gs~~~~---~~ll~~l~~~~~~~vv~G~~~~~------lp~nv~~~~~~~~--~pdlLa~adl~It~--gG~-~T 291 (838)
.+++.|..... ..+++++....+.++++|..... ..+||+++++++. ++++|+.||++|.. -|+ .+
T Consensus 197 ~il~~G~~~~~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~ 276 (351)
T cd03804 197 YYLSVGRLVPYKRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIV 276 (351)
T ss_pred EEEEEEcCccccChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCch
Confidence 35667776653 23344332222777888865431 5789999998865 67899999999953 233 46
Q ss_pred HHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 292 VSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 292 v~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+.|||++|+|+|+.......|. ++..+.|..++..+ ++.+.++|.++++++
T Consensus 277 ~~Eama~G~Pvi~~~~~~~~e~------i~~~~~G~~~~~~~--~~~la~~i~~l~~~~ 327 (351)
T cd03804 277 PVEAMASGTPVIAYGKGGALET------VIDGVTGILFEEQT--VESLAAAVERFEKNE 327 (351)
T ss_pred HHHHHHcCCCEEEeCCCCCcce------eeCCCCEEEeCCCC--HHHHHHHHHHHHhCc
Confidence 8899999999999875444443 55567898887665 467889999998876
No 155
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.09 E-value=0.00062 Score=84.15 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=61.8
Q ss_pred CCCCeEECCCC--CCHHHHHhhc----CEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 003222 260 LPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (838)
Q Consensus 260 lp~nv~~~~~~--~~~pdlLa~a----dl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l 329 (838)
+..+|.+.++. ..+|++|+.| |+||.-+ | ..++.|||+||+|+|+....+.. +.++....|+.+
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~------EII~~g~nGlLV 619 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPV------DIHRVLDNGLLV 619 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcH------HHhccCCcEEEE
Confidence 35678888774 4678899876 6999742 3 25899999999999998754333 234555678888
Q ss_pred ecCCCChhhHHHHHHHHhhCC
Q 003222 330 IRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++.+ ++.|.++|.++++++
T Consensus 620 dP~D--~eaLA~AL~~LL~Dp 638 (1050)
T TIGR02468 620 DPHD--QQAIADALLKLVADK 638 (1050)
T ss_pred CCCC--HHHHHHHHHHHhhCH
Confidence 8766 468999999999876
No 156
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.09 E-value=4e-05 Score=83.29 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=52.7
Q ss_pred EEEEEe--CCCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 633 SMLVSS--AVPEGKGVSSSASVEVASMSAIAAAHGLNIH-PRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 633 ~i~i~s--~iP~g~GLgSSAA~~va~~~al~~l~~~~l~-~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
++.|.| ++|.++||+||||..+|++.|+..+++++++ +.++..+|. +| || .|.- |++||.
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr------~G--SG-Sa~r-S~~Gg~ 167 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR------QG--SG-SACR-SLYGGF 167 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHh------cc--Ch-HHHH-HhhCCe
Confidence 677777 9999999999999999999999999999999 999999998 45 56 4555 999994
No 157
>PLN02316 synthase/transferase
Probab=98.02 E-value=0.003 Score=78.44 Aligned_cols=137 Identities=18% Similarity=0.104 Sum_probs=83.7
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCc--hhhh-HHh---hCCCCcEEEEeCCCCC-----C-----------CCCCeEEC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPA--GWKL-KEE---YLPSGWKCLVCGASDS-----Q-----------LPPNFIKL 267 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~l-l~~---l~~~~~~~vv~G~~~~-----~-----------lp~nv~~~ 267 (838)
+..+++.+|++.....+++..|.... +.++ +.+ ++..+.+++++|..+. . .+.+|.+.
T Consensus 826 k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~ 905 (1036)
T PLN02316 826 KEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLC 905 (1036)
T ss_pred HHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEE
Confidence 34578889987433346667777664 2233 332 3345677888886531 0 14567654
Q ss_pred CCCCC-HH-HHHhhcCEEEec-----CChhhHHHHHHcCCcEEEEeCCCCCChHHHH-------HHHHHcCcEEEEecCC
Q 003222 268 PKDAY-TP-DFMAASDCMLGK-----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLR-------NMLEFYQGGVEMIRRD 333 (838)
Q Consensus 268 ~~~~~-~p-dlLa~adl~It~-----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na-------~~l~~~G~g~~l~~~~ 333 (838)
+..+. +. .+++.||+|+.- +| .+.+|||++|+|.|+....+..|..... +.....+.|..++..+
T Consensus 906 g~~de~lah~iyaaADiflmPS~~EP~G-LvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d 984 (1036)
T PLN02316 906 LTYDEPLSHLIYAGADFILVPSIFEPCG-LTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGAD 984 (1036)
T ss_pred ecCCHHHHHHHHHhCcEEEeCCcccCcc-HHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCC
Confidence 33332 32 689999999963 24 6999999999999987654444431110 0000125688887655
Q ss_pred CChhhHHHHHHHHhhC
Q 003222 334 LLTGHWKPYLERAISL 349 (838)
Q Consensus 334 ~~~~~l~~~l~~ll~~ 349 (838)
++.+..+|.+++..
T Consensus 985 --~~aLa~AL~raL~~ 998 (1036)
T PLN02316 985 --AAGVDYALNRAISA 998 (1036)
T ss_pred --HHHHHHHHHHHHhh
Confidence 56788899888864
No 158
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.02 E-value=0.00024 Score=83.49 Aligned_cols=220 Identities=18% Similarity=0.188 Sum_probs=120.4
Q ss_pred HHHHHHHhcCCCcEEEECC-Cch-----HHHHHHHhCCcEEEE--ecCchhHHHHhhhhhccc-chHH----HH-HHHHh
Q 003222 108 KDEVEWLNSIKADLVVSDV-VPV-----ACRAAADAGIRSVCV--TNFSWDFIYAEYVMAAGH-HHRS----IV-WQIAE 173 (838)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~-~~~-----~~~aA~~lgIP~V~i--s~~~~~~i~~~~~~~~~~-~~~~----i~-~~l~~ 173 (838)
.+..+.|.+++||+|+... ..+ |..+|++++ |+|.+ |++. .|...++. .... .. ..+..
T Consensus 424 gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~------eYl~~y~~g~L~~~llk~l~~~v~r 496 (794)
T PLN02501 424 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL------EYIKREKNGALQAFFVKHINNWVTR 496 (794)
T ss_pred HHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcH------HHHhHhcchhHHHHHHHHHHHHHHH
Confidence 4557788999999999764 333 455899999 87765 5543 12221110 1111 11 12222
Q ss_pred hccccceEEecCCCCCCCCCC-ceee--cCcccccCCcC-hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhh---
Q 003222 174 DYSHCEFLIRLPGYCPMPAFR-DVID--VPLVVRRLHKS-RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY--- 243 (838)
Q Consensus 174 ~y~~~d~ll~~~~~~~~p~~~-~v~~--ip~~~~~~~~~-~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l--- 243 (838)
.| |+.++.+.... ..++ .++. .|+......+. +...++.++.....+. +++.|..... ..+++++
T Consensus 497 ~h--cD~VIaPS~at--q~L~~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kg-iLfVGRLa~EKGld~LLeAla~L 571 (794)
T PLN02501 497 AY--CHKVLRLSAAT--QDLPKSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKG-AYFLGKMVWAKGYRELIDLLAKH 571 (794)
T ss_pred hh--CCEEEcCCHHH--HHhcccceeecccccccccCCcchhHHHHhcCCccccCc-eEEEEcccccCCHHHHHHHHHHH
Confidence 33 67666422110 0111 1111 24433322222 2222345555322222 3445665542 2333332
Q ss_pred C--CCCcEEEEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCC
Q 003222 244 L--PSGWKCLVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 244 ~--~~~~~~vv~G~~~~~---------lp~nv~~~~~~~~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~ 308 (838)
. .+++.++++|..+.. +.-++.++++.++.+++|+.+|+||.-+ | .+++.|||++|+|+|+...+
T Consensus 572 ~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~p 651 (794)
T PLN02501 572 KNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHP 651 (794)
T ss_pred HhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCC
Confidence 1 246788888876531 2335777888877778999999999632 2 35899999999999998754
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 309 ~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
. .+. +...+.|... .+ .+.+.++|.+++.++
T Consensus 652 G-~e~------V~~g~nGll~--~D--~EafAeAI~~LLsd~ 682 (794)
T PLN02501 652 S-NEF------FRSFPNCLTY--KT--SEDFVAKVKEALANE 682 (794)
T ss_pred C-Cce------EeecCCeEec--CC--HHHHHHHHHHHHhCc
Confidence 3 211 2222333322 22 578888999999866
No 159
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.97 E-value=6.1e-05 Score=82.03 Aligned_cols=109 Identities=6% Similarity=0.093 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhhhcCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP-RDLALLCQKVENHIVGAP 688 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~-~ela~~a~~~E~~~~G~~ 688 (838)
.|.+.-++..+.+..|.. .|++|.|.++||.++|||||||..++++.+++..+++ +. +++.++|.+.|
T Consensus 74 ~Nlv~ka~~~~~~~~~~~--~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l--~~~e~L~~lA~~lG------- 142 (297)
T PRK14613 74 QNILYKTFIKARSLFPEL--PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF--FTSDEMQVFAKEIG------- 142 (297)
T ss_pred cchHHHHHHHHHHHhCCC--CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHhC-------
Confidence 567766667777666653 5899999999999999999999987777777665544 44 66776888763
Q ss_pred CChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCc
Q 003222 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (838)
Q Consensus 689 ~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~ 737 (838)
.| .++.+||. ..+.... .+...+++++..+. +++..+..-+
T Consensus 143 ---aD-vP~~l~G~--~a~~~g~-Ge~~~~l~~~~~~~-vlv~P~~~vs 183 (297)
T PRK14613 143 ---SD-VPFFLGEG--HAFVTGK-GEIMEEIEVHKGQG-ILALTPQVMN 183 (297)
T ss_pred ---Cc-cchhhcCC--eEEEecC-CcEEEEcCCCCCeE-EEEECCCCcC
Confidence 27 44555553 2333323 33335666665554 5666665544
No 160
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.96 E-value=0.00091 Score=75.46 Aligned_cols=115 Identities=21% Similarity=0.229 Sum_probs=75.6
Q ss_pred cEEEEEcCCCCch--hhhHHhhC--CCCcEEEEeCCCCC--C---C--CCCeEECCCCC--CHHHHHhhcCEEEec----
Q 003222 224 KLLILNFGGQPAG--WKLKEEYL--PSGWKCLVCGASDS--Q---L--PPNFIKLPKDA--YTPDFMAASDCMLGK---- 286 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~--~~ll~~l~--~~~~~~vv~G~~~~--~---l--p~nv~~~~~~~--~~pdlLa~adl~It~---- 286 (838)
+.+++++|+.... .+++.++. .+++.++++|.... . + .+||+++++++ .+|.+|+++|++|.-
T Consensus 205 ~~~i~y~G~l~~~~d~~ll~~la~~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~ 284 (373)
T cd04950 205 RPVIGYYGAIAEWLDLELLEALAKARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLN 284 (373)
T ss_pred CCEEEEEeccccccCHHHHHHHHHHCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccc
Confidence 3466778887653 34444432 36788999987521 1 2 37999999873 678999999999852
Q ss_pred ----CC-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 287 ----IG-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 287 ----gG-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++ .+.+.|++++|+|+|..+.+ + ..+..+ +..+... +++.+.++|++++.++
T Consensus 285 ~~~~~~~P~Kl~EylA~G~PVVat~~~---~------~~~~~~-~~~~~~~--d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 285 ELTRATSPLKLFEYLAAGKPVVATPLP---E------VRRYED-EVVLIAD--DPEEFVAAIEKALLED 341 (373)
T ss_pred hhhhcCCcchHHHHhccCCCEEecCcH---H------HHhhcC-cEEEeCC--CHHHHHHHHHHHHhcC
Confidence 22 24589999999999987621 1 122233 3333333 4678999999977544
No 161
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.94 E-value=0.0023 Score=73.44 Aligned_cols=119 Identities=13% Similarity=0.017 Sum_probs=75.8
Q ss_pred CcEEEEEcCCCCch---hhhHHh---hC---C----CCcEEEEeCCCCC-----------------CCCCCeEECCCCC-
Q 003222 223 VKLLILNFGGQPAG---WKLKEE---YL---P----SGWKCLVCGASDS-----------------QLPPNFIKLPKDA- 271 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~---~~ll~~---l~---~----~~~~~vv~G~~~~-----------------~lp~nv~~~~~~~- 271 (838)
...++++.|..... ..++++ +. + ++++++++|.... .+.++|+++++.+
T Consensus 236 ~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~ 315 (419)
T cd03806 236 RENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPF 315 (419)
T ss_pred CCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCH
Confidence 34577888866542 122222 21 2 2478888886421 1457899888753
Q ss_pred -CHHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHH---HcCcEEEEecCCCChhhHHHHH
Q 003222 272 -YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE---FYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 -~~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~---~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++.+|+.||++|... |+ .++.|||++|+|+|+....+..+ ..++ ....|.... +++.+.++|
T Consensus 316 ~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~-----~iv~~~~~g~~G~l~~----d~~~la~ai 386 (419)
T cd03806 316 EELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL-----DIVVPWDGGPTGFLAS----TAEEYAEAI 386 (419)
T ss_pred HHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCch-----heeeccCCCCceEEeC----CHHHHHHHH
Confidence 4568999999998522 22 48899999999999876322111 1122 345676652 467899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++++++
T Consensus 387 ~~ll~~~ 393 (419)
T cd03806 387 EKILSLS 393 (419)
T ss_pred HHHHhCC
Confidence 9999765
No 162
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.93 E-value=0.0021 Score=68.13 Aligned_cols=281 Identities=15% Similarity=0.113 Sum_probs=139.2
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH-HHHHHhhccHHH
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE-KYSETAVAPRKS 105 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 105 (838)
.-|+-....+..+|.++||+|.+.|..-..+ ...+..-++.+..++-. | .. ++. ++..+. .
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v-~~LLd~ygf~~~~Igk~-g-------~~----tl~~Kl~~~~-----e 71 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVV-TELLDLYGFPYKSIGKH-G-------GV----TLKEKLLESA-----E 71 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcH-HHHHHHhCCCeEeeccc-C-------Cc----cHHHHHHHHH-----H
Confidence 3688889999999999999999987643211 11111112333332111 1 01 122 233321 1
Q ss_pred HHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhH-------HHHhhhhhcccchHHHHHHHHhhcccc
Q 003222 106 ILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDF-------IYAEYVMAAGHHHRSIVWQIAEDYSHC 178 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~-------i~~~~~~~~~~~~~~i~~~l~~~y~~~ 178 (838)
....+.+++.+++||+.+.-+.+-....|.-+|+|++.+.|.-... .+..+... +...+. +.+.......
T Consensus 72 R~~~L~ki~~~~kpdv~i~~~s~~l~rvafgLg~psIi~~D~ehA~~qnkl~~Pla~~ii~-P~~~~~--~~~~~~G~~p 148 (346)
T COG1817 72 RVYKLSKIIAEFKPDVAIGKHSPELPRVAFGLGIPSIIFVDNEHAEAQNKLTLPLADVIIT-PEAIDE--EELLDFGADP 148 (346)
T ss_pred HHHHHHHHHhhcCCceEeecCCcchhhHHhhcCCceEEecCChhHHHHhhcchhhhhheec-ccccch--HHHHHhCCCc
Confidence 2334467789999999999777777788888999998874432110 00000000 000000 0000111110
Q ss_pred ceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch-------hhhHHhhCC--CCcE
Q 003222 179 EFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-------WKLKEEYLP--SGWK 249 (838)
Q Consensus 179 d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-------~~ll~~l~~--~~~~ 249 (838)
.++.. +..+-.+-.+. ...+++ ++.+.||+..+.++|++=+=+.++. ..++..+++ ++.-
T Consensus 149 ~~i~~---------~~giae~~~v~-~f~pd~-evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g 217 (346)
T COG1817 149 NKISG---------YNGIAELANVY-GFVPDP-EVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG 217 (346)
T ss_pred cceec---------ccceeEEeecc-cCCCCH-HHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCc
Confidence 11110 00010110011 122333 5667899987778888755443331 112332221 2222
Q ss_pred EEEeCCCCCC--CC---CCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcC
Q 003222 250 CLVCGASDSQ--LP---PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ 324 (838)
Q Consensus 250 ~vv~G~~~~~--lp---~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G 324 (838)
++++-+...+ .- .|+.+-....+.-++|-.|+++||.|| +.-.||+..|+|+|..- + +.--..-+++.+.|
T Consensus 218 iV~ipr~~~~~eife~~~n~i~pk~~vD~l~Llyya~lvig~gg-TMarEaAlLGtpaIs~~-p--Gkll~vdk~lie~G 293 (346)
T COG1817 218 IVLIPREKEQAEIFEGYRNIIIPKKAVDTLSLLYYATLVIGAGG-TMAREAALLGTPAISCY-P--GKLLAVDKYLIEKG 293 (346)
T ss_pred EEEecCchhHHHHHhhhccccCCcccccHHHHHhhhheeecCCc-hHHHHHHHhCCceEEec-C--CccccccHHHHhcC
Confidence 3333333222 11 222221111122258888999999555 77889999999999985 2 22223346778876
Q ss_pred cEEEEecCCCChhhHHHHHHHH
Q 003222 325 GGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 325 ~g~~l~~~~~~~~~l~~~l~~l 346 (838)
.- ....+.. +.|..+++.+
T Consensus 294 ~~--~~s~~~~-~~~~~a~~~l 312 (346)
T COG1817 294 LL--YHSTDEI-AIVEYAVRNL 312 (346)
T ss_pred ce--eecCCHH-HHHHHHHHHh
Confidence 54 5443432 4454444333
No 163
>PRK05905 hypothetical protein; Provisional
Probab=97.91 E-value=0.00024 Score=75.34 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=78.3
Q ss_pred hHHHH-HHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCC
Q 003222 610 AAYVA-GTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (838)
Q Consensus 610 ~~y~~-g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~ 688 (838)
.|.+. -++..+.+..+.. .|+++.+..+||.|+||||++|=.+++..+++++++ ++.+++.++|.+.
T Consensus 66 ~nli~~ka~~~l~~~~~~~--~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~l-------- 133 (258)
T PRK05905 66 SRLILVKTLEWLRDKYNIK--NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKL-------- 133 (258)
T ss_pred cchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHh--------
Confidence 34444 4456566566653 589999999999999999999999999999999998 6888888887642
Q ss_pred CChhhHHHhhcC-CCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCCCCch
Q 003222 689 CGVMDQMASACG-EANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADY 743 (838)
Q Consensus 689 ~G~mDq~a~~~G-~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~~~~y 743 (838)
| .|---++.| +. ++. ..-.+..++++.+....+++++.++.=++ ..-|
T Consensus 134 -G-ADVPFfl~g~~~--a~~--~G~GE~l~pl~~~~~~~~vlv~P~~~vST-~~vY 182 (258)
T PRK05905 134 -G-SDIPFFLSGYKT--AYI--SDYGSQVEDLIGQFKLTYKVIFMNVNVST-KKVF 182 (258)
T ss_pred -C-CCcceEEeCCcc--EEE--EeeCceeEECCCCCCceEEEECCCCCCCH-HHHH
Confidence 2 355556777 53 222 23344446665443445778776554443 2345
No 164
>PLN02939 transferase, transferring glycosyl groups
Probab=97.91 E-value=0.0082 Score=73.53 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=85.9
Q ss_pred hHHHHHHhCCCCC--CcEEEEEcCCCCch--hh-hHHh---hCCCCcEEEEeCCCCC-----C---------CCCCeEEC
Q 003222 210 RKEVRKELGIEDD--VKLLILNFGGQPAG--WK-LKEE---YLPSGWKCLVCGASDS-----Q---------LPPNFIKL 267 (838)
Q Consensus 210 ~~~~r~~l~~~~~--~~~Vlvs~Gs~~~~--~~-ll~~---l~~~~~~~vv~G~~~~-----~---------lp~nv~~~ 267 (838)
+..+++.+|++.+ ...++.+.|..... .. ++.+ +...+..++++|..+. . ..++|.++
T Consensus 763 K~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~Fl 842 (977)
T PLN02939 763 KAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLI 842 (977)
T ss_pred hHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEE
Confidence 4578899998742 23466777776642 22 2222 3345678888886632 0 24578877
Q ss_pred CCCCCH--HHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHH--HHHH-HHcCcEEEEecCCCChhh
Q 003222 268 PKDAYT--PDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFL--RNML-EFYQGGVEMIRRDLLTGH 338 (838)
Q Consensus 268 ~~~~~~--pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~N--a~~l-~~~G~g~~l~~~~~~~~~ 338 (838)
++.+.. +.+++.+|+||.-+ -..+.+|||++|+|.|+....+..|...+ ...+ +..+.|..+...+ ++.
T Consensus 843 G~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D--~ea 920 (977)
T PLN02939 843 LKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPD--EQG 920 (977)
T ss_pred eccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCC--HHH
Confidence 665543 47899999999632 23689999999999998765444442111 0011 1235687777654 467
Q ss_pred HHHHHHHHhh
Q 003222 339 WKPYLERAIS 348 (838)
Q Consensus 339 l~~~l~~ll~ 348 (838)
+..+|.+++.
T Consensus 921 La~AL~rAL~ 930 (977)
T PLN02939 921 LNSALERAFN 930 (977)
T ss_pred HHHHHHHHHH
Confidence 7788887764
No 165
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.88 E-value=5.7e-05 Score=77.05 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=74.4
Q ss_pred CCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEE
Q 003222 629 EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAM 708 (838)
Q Consensus 629 ~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~ 708 (838)
..|.++.+.|+||.|.||+||.|=.||++.|+...+|..+.+.+|+++|-.+| |+ |- +.|-+ +.++
T Consensus 81 ~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iE------Pt---Ds--iiF~~---~tlF 146 (293)
T COG4542 81 NTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE------PT---DS--IIFDK---ATLF 146 (293)
T ss_pred cCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcC------Cc---cc--eeccc---ceee
Confidence 36899999999999999999999999999999999999999999999999999 33 21 23333 4556
Q ss_pred EecCCceeeeeccCCCeEEEEEeCCCCCcCCCCchhh
Q 003222 709 VCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGS 745 (838)
Q Consensus 709 d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~~~~y~~ 745 (838)
|-+...+.+...-++.+.+++++.+..-++ .+|+.
T Consensus 147 d~r~g~~~~~~g~~PpL~ilv~e~~~~v~T--~~y~q 181 (293)
T COG4542 147 DQREGRVIEFLGEMPPLHILVFEGKGTVET--VDYNQ 181 (293)
T ss_pred hhccchHHHhcCCCCceEEEEEcCCCceee--eeccC
Confidence 655554433333234677777776654433 35654
No 166
>PLN00142 sucrose synthase
Probab=97.84 E-value=0.0035 Score=76.10 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=74.1
Q ss_pred HHHhCC--CCCCcEEEEEcCCCCch---hhhHHhh-----CCCCcEEEEeCCC-CC----------------------CC
Q 003222 214 RKELGI--EDDVKLLILNFGGQPAG---WKLKEEY-----LPSGWKCLVCGAS-DS----------------------QL 260 (838)
Q Consensus 214 r~~l~~--~~~~~~Vlvs~Gs~~~~---~~ll~~l-----~~~~~~~vv~G~~-~~----------------------~l 260 (838)
++.++. +++++ ++++.|..... ..+++++ ..+++.++++|.. .+ .+
T Consensus 562 ~e~lg~l~~~~kp-vIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL 640 (815)
T PLN00142 562 DEHIGYLKDRKKP-IIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL 640 (815)
T ss_pred HHHhCCccCCCCc-EEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC
Confidence 345664 33344 66788877653 2233432 1235677777643 10 03
Q ss_pred CCCeEECCCCCC---HHH---HHh-hcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 003222 261 PPNFIKLPKDAY---TPD---FMA-ASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (838)
Q Consensus 261 p~nv~~~~~~~~---~pd---lLa-~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l 329 (838)
..+|.++++... .++ +++ ++|+||.-+ |+ .++.|||+||+|+|+....+ ..+.++....|..+
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG------~~EIV~dG~tG~LV 714 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG------PAEIIVDGVSGFHI 714 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC------HHHHhcCCCcEEEe
Confidence 466777665321 233 344 479999642 32 58999999999999976432 33445555679888
Q ss_pred ecCCCChhhHHHHHHHHh
Q 003222 330 IRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll 347 (838)
++.+ ++.+.++|.+++
T Consensus 715 ~P~D--~eaLA~aI~~lL 730 (815)
T PLN00142 715 DPYH--GDEAANKIADFF 730 (815)
T ss_pred CCCC--HHHHHHHHHHHH
Confidence 8766 356677766544
No 167
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=97.82 E-value=1.1e-05 Score=77.23 Aligned_cols=113 Identities=23% Similarity=0.289 Sum_probs=59.7
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChH-HHHHHHHHHhh
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRL-ASLEKYSETAV 100 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~l~~~~~~~~ 100 (838)
+++...||+.|+++||++|+++||+|++.+... +...+...++.+.+...+.. . ... ...........
T Consensus 4 ~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~---~~~~v~~~Gl~~~~~~~~~~------~--~~~~~~~~~~~~~~~ 72 (139)
T PF03033_consen 4 ATGGTRGHVYPFLALARALRRRGHEVRLATPPD---FRERVEAAGLEFVPIPGDSR------L--PRSLEPLANLRRLAR 72 (139)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTT-EEEEEETGG---GHHHHHHTT-EEEESSSCGG------G--GHHHHHHHHHHCHHH
T ss_pred EEcCChhHHHHHHHHHHHHhccCCeEEEeeccc---ceecccccCceEEEecCCcC------c--CcccchhhhhhhHHH
Confidence 345557999999999999999999999888743 23333334555655322200 0 000 01111111100
Q ss_pred ccHHHHHHHHHHHHhc------------CCCcEEEECC-CchHHHHHHHhCCcEEEEecC
Q 003222 101 APRKSILKDEVEWLNS------------IKADLVVSDV-VPVACRAAADAGIRSVCVTNF 147 (838)
Q Consensus 101 ~~~~~~l~~~~~~L~~------------~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~ 147 (838)
....+.+..+.+++ ..+|+++.+. ...+..+|+.++||.+...-+
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~ 130 (139)
T PF03033_consen 73 --LIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLF 130 (139)
T ss_dssp --HHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESS
T ss_pred --HhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhC
Confidence 00012222233332 2456666554 556788899999999886433
No 168
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.80 E-value=0.00013 Score=81.22 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=67.9
Q ss_pred CCCcEEEEEcCCCCc---h---hhh---HHhhCC-CCcEEEEeCCCCC-----------CCCCCeEECCCCCCH--HHHH
Q 003222 221 DDVKLLILNFGGQPA---G---WKL---KEEYLP-SGWKCLVCGASDS-----------QLPPNFIKLPKDAYT--PDFM 277 (838)
Q Consensus 221 ~~~~~Vlvs~Gs~~~---~---~~l---l~~l~~-~~~~~vv~G~~~~-----------~lp~nv~~~~~~~~~--pdlL 277 (838)
..++++++++=.... + ..+ +.++.. .++.+++...+.+ .+ +|+++++-..+. -.+|
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll 256 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLL 256 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHH
Confidence 477899998832221 1 122 223322 4666666655432 14 588876443322 2788
Q ss_pred hhcCEEEecCChhhHH-HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 278 AASDCMLGKIGYGTVS-EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 278 a~adl~It~gG~~Tv~-Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
++|+++||-+| ++. ||.++|+|+|.+. ...| .+.....|..+.+. ..++.+..++++++..
T Consensus 257 ~~a~~vvgdSs--GI~eEa~~lg~P~v~iR--~~ge----Rqe~r~~~~nvlv~---~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 257 KNADLVVGDSS--GIQEEAPSLGKPVVNIR--DSGE----RQEGRERGSNVLVG---TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHESEEEESSH--HHHHHGGGGT--EEECS--SS-S-----HHHHHTTSEEEET---SSHHHHHHHHHHHHH-
T ss_pred hcceEEEEcCc--cHHHHHHHhCCeEEEec--CCCC----CHHHHhhcceEEeC---CCHHHHHHHHHHHHhC
Confidence 89999999999 666 9999999999995 2333 33456677777744 3467888999998865
No 169
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=97.78 E-value=0.00086 Score=71.50 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+.-+...+.+..+. ..|++|.++.+||+|+|||+=+|=..++..+|+++++..++.+||+.++.+. |
T Consensus 67 NLv~rAa~ll~~~~~~--~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~L-----G---- 135 (289)
T COG1947 67 NLVYRAAELLRKRTGI--AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRL-----G---- 135 (289)
T ss_pred hHHHHHHHHHHHHhCC--CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-----C----
Confidence 6665555666666774 3689999999999999999888888889999999999999999999998753 2
Q ss_pred hhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCC
Q 003222 691 VMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIR 735 (838)
Q Consensus 691 ~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~ 735 (838)
.|--.+++||. + +. ..-.+..++++-++...+++++-++.
T Consensus 136 -aDVPffl~g~t--A-~a-~G~GE~l~~~~~~~~~~~vl~~P~v~ 175 (289)
T COG1947 136 -ADVPFFLSGGT--A-FA-EGRGEKLEPLEDPPEKWYVLAKPGVG 175 (289)
T ss_pred -CCcCeeeeCCc--e-EE-EEccceeeECCCCCCceEEEEeCCCC
Confidence 35555777774 2 22 22334446665233445566665443
No 170
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.73 E-value=0.00012 Score=72.43 Aligned_cols=132 Identities=18% Similarity=0.129 Sum_probs=91.3
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHH---hhC---CCCcEEEEeCCCCC-----------CCCCCeEECCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKE---EYL---PSGWKCLVCGASDS-----------QLPPNFIKLPK 269 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~---~l~---~~~~~~vv~G~~~~-----------~lp~nv~~~~~ 269 (838)
++.++...+.+ +.+.++++.|..... ..+++ .+. .+++.++++|.... .+..+++++++
T Consensus 2 ~~~~~~~~~~~-~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (172)
T PF00534_consen 2 KDKLREKLKIP-DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGY 80 (172)
T ss_dssp HHHHHHHTTT--TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEES
T ss_pred hHHHHHHcCCC-CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccc
Confidence 45667777765 555677778877653 12222 221 46778888994331 15678988877
Q ss_pred CC--CHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 270 DA--YTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 270 ~~--~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.. .+.+++..||++|.. +...++.||+++|+|+|+... ..+.+.+.....|..++.. +.+.+.++|
T Consensus 81 ~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~------~~~~e~~~~~~~g~~~~~~--~~~~l~~~i 152 (172)
T PF00534_consen 81 VPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDI------GGNNEIINDGVNGFLFDPN--DIEELADAI 152 (172)
T ss_dssp HSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESS------THHHHHSGTTTSEEEESTT--SHHHHHHHH
T ss_pred ccccccccccccceeccccccccccccccccccccccceeeccc------cCCceeeccccceEEeCCC--CHHHHHHHH
Confidence 65 566889999999975 455689999999999998752 2455667777779999876 457899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.+++.++
T Consensus 153 ~~~l~~~ 159 (172)
T PF00534_consen 153 EKLLNDP 159 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHCCH
Confidence 9998765
No 171
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.70 E-value=0.0011 Score=77.31 Aligned_cols=120 Identities=14% Similarity=0.035 Sum_probs=82.4
Q ss_pred CCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC---------------CCCCCeEECCCCCCHHHHHh
Q 003222 222 DVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS---------------QLPPNFIKLPKDAYTPDFMA 278 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~---------------~lp~nv~~~~~~~~~pdlLa 278 (838)
+.+.++++.|..... ..++++ +. .+++.++++|.... .+.+||++++ ...++++|+
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~ 369 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP 369 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH
Confidence 344577788877642 223332 21 25678888886521 1467899999 467889999
Q ss_pred hcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc------CcEEEEecCCCChhhHHHHHHHHhh
Q 003222 279 ASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY------QGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 279 ~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~------G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
.+|++|..+ -.+++.|||++|+|+|+..... ..+.++.. ..|.+++..+ ++.+.++|.++++
T Consensus 370 ~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~------~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~ 441 (475)
T cd03813 370 KLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGS------CRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLK 441 (475)
T ss_pred hCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCC------hHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhc
Confidence 999999543 3358999999999999965322 23344442 3688887666 4688999999987
Q ss_pred CC
Q 003222 349 LK 350 (838)
Q Consensus 349 ~~ 350 (838)
++
T Consensus 442 ~~ 443 (475)
T cd03813 442 DP 443 (475)
T ss_pred CH
Confidence 65
No 172
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=97.63 E-value=0.00051 Score=74.25 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
...++.++..+.++.|.. .++.|...++.|-++||+||||...|++.|++.++++.++..++.++|..+- |..|
T Consensus 71 ~~k~~~~ld~~R~~~~~~--~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gS----GSa~ 144 (329)
T COG3407 71 NEKARRVLDRFRKEYGIS--FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGS----GSAS 144 (329)
T ss_pred HHHHHHHHHHHHHhhccc--ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhc----cchh
Confidence 566777777765566654 5799999999999999999999999999999999999999999999998532 4443
Q ss_pred ChhhHHHhhcCCC
Q 003222 690 GVMDQMASACGEA 702 (838)
Q Consensus 690 G~mDq~a~~~G~~ 702 (838)
-+++||.
T Consensus 145 ------RS~~Gg~ 151 (329)
T COG3407 145 ------RSIFGGF 151 (329)
T ss_pred ------hhhcCCe
Confidence 3899995
No 173
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.014 Score=64.36 Aligned_cols=100 Identities=18% Similarity=0.105 Sum_probs=71.3
Q ss_pred CCeEECCCCCCHH--HHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhH
Q 003222 262 PNFIKLPKDAYTP--DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHW 339 (838)
Q Consensus 262 ~nv~~~~~~~~~p--dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l 339 (838)
+||++++-..+.+ -+|.+|-+++|-+| +-.-||-.+|+|++++. ...|++. ....|.-+.+.. +.+.+
T Consensus 262 ~~v~li~pl~~~~f~~L~~~a~~iltDSG-giqEEAp~lg~Pvl~lR--~~TERPE----~v~agt~~lvg~---~~~~i 331 (383)
T COG0381 262 ERVKLIDPLGYLDFHNLMKNAFLILTDSG-GIQEEAPSLGKPVLVLR--DTTERPE----GVEAGTNILVGT---DEENI 331 (383)
T ss_pred CcEEEeCCcchHHHHHHHHhceEEEecCC-chhhhHHhcCCcEEeec--cCCCCcc----ceecCceEEeCc---cHHHH
Confidence 4577665444444 78899999999999 67889999999999998 5677754 334555555543 24678
Q ss_pred HHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 340 KPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 340 ~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
.+++.++++++..|. ......+++++.+..+.
T Consensus 332 ~~~~~~ll~~~~~~~~m~~~~npYgdg~as~rIv~~l~~~~ 372 (383)
T COG0381 332 LDAATELLEDEEFYERMSNAKNPYGDGNASERIVEILLNYF 372 (383)
T ss_pred HHHHHHHhhChHHHHHHhcccCCCcCcchHHHHHHHHHHHh
Confidence 889999998754432 34446777777777764
No 174
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.58 E-value=0.0013 Score=73.74 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=83.8
Q ss_pred cEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC-----------CCCCCeEECCCCCCHHHHHhhcCEEE
Q 003222 224 KLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS-----------QLPPNFIKLPKDAYTPDFMAASDCML 284 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~-----------~lp~nv~~~~~~~~~pdlLa~adl~I 284 (838)
+..+++.|..... ..+++. +. .+++.++++|.... .++.+|.+.++.+.+.++|+.||++|
T Consensus 204 ~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v 283 (372)
T cd04949 204 PHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSL 283 (372)
T ss_pred CCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEE
Confidence 3456777776543 223332 22 25677777775542 14678998888888889999999999
Q ss_pred ecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 285 GKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 285 t~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
..+ ...++.||+++|+|+|+...... +...++....|.+++..+ .+.+.++|.++++++
T Consensus 284 ~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g-----~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~ 346 (372)
T cd04949 284 LTSQSEGFGLSLMEALSHGLPVISYDVNYG-----PSEIIEDGENGYLVPKGD--IEALAEAIIELLNDP 346 (372)
T ss_pred ecccccccChHHHHHHhCCCCEEEecCCCC-----cHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCH
Confidence 633 33589999999999999864321 234566667888887655 468899999998765
No 175
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=97.53 E-value=0.00023 Score=73.41 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=64.6
Q ss_pred CCCCChHHHHHHHHH-HHHHHH-hCCCCCH-HHHHHHHHHHHhhhcC-CCCChhhHHHhhcCCCCeEEEEEecCCce---
Q 003222 643 GKGVSSSASVEVASM-SAIAAA-HGLNIHP-RDLALLCQKVENHIVG-APCGVMDQMASACGEANKLLAMVCQPAEL--- 715 (838)
Q Consensus 643 g~GLgSSAA~~va~~-~al~~l-~~~~l~~-~ela~~a~~~E~~~~G-~~~G~mDq~a~~~G~~~~~l~~d~~~~~~--- 715 (838)
..|||||||+.+.+. .++..+ .+-+++. .++-++||.+--.-.| .-|| -|-.++++|+ +++-.+.|...
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSG-fDiaaA~fGs---iiyrRF~p~li~~l 182 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSG-FDIAAAIFGS---IIYRRFEPGLIPKL 182 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCcc-chhhHhhhcc---eEEeecCcchhhhh
Confidence 589999999999888 344443 4556665 7889999987766665 5567 6999999999 35544544432
Q ss_pred --eeeeccCCCeEEEEEeCCCCCcCC
Q 003222 716 --LGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 716 --~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
.+.+++. ++.++..+++..-++.
T Consensus 183 ~qig~~nfg-~y~LmmGd~a~gSeTv 207 (337)
T COG3890 183 RQIGAVNFG-DYYLMMGDQAIGSETV 207 (337)
T ss_pred HhhCccccc-CeeeeecccccCccch
Confidence 2334443 7788888888877654
No 176
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=97.42 E-value=0.0017 Score=67.67 Aligned_cols=119 Identities=24% Similarity=0.315 Sum_probs=84.7
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV 709 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d 709 (838)
.|..+.+.+++|.|+|+|-|+|...+.+.|++..++.+ .++.++.|+.+|-. .-+|+.|-.|..+|| +.+.
T Consensus 73 ~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~---~gtGLGDVvAq~~GG----lViR 143 (283)
T COG1829 73 DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVE---NGTGLGDVVAQYTGG----LVIR 143 (283)
T ss_pred cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHH---cCCCchHHHHHhcCc----EEEE
Confidence 35778999999999999999999999999999999876 78899999999954 456889999999999 3344
Q ss_pred ecCC--ce--eeeeccCCCeEEEEEeCCCC--CcCCCCchhhHHHHHhcChHHHhcc
Q 003222 710 CQPA--EL--LGVVEIPSHIRFWGIDSGIR--HSVGGADYGSVRAGAFMGRKMIKST 760 (838)
Q Consensus 710 ~~~~--~~--~~~v~~~~~~~~vi~~s~~~--~~~~~~~y~~~r~~~~~g~~~l~~~ 760 (838)
.++. .+ .+.++.|. ++++...-+.- ++..+++- ++.-...|++.|.+.
T Consensus 144 ~~pG~Pg~~~vd~Ip~~~-~~V~~~~~g~l~T~~vi~~~~--~~~i~~~g~~~l~el 197 (283)
T COG1829 144 VKPGGPGEGEVDRIPVPG-LRVITISLGELSTKSVITDEV--VRKINEAGKRALAEL 197 (283)
T ss_pred ecCCCCCeEEEEEeecCC-ceEEEEEcccccHHHhhhhHH--HHHHHHHHHHHHHHH
Confidence 4433 22 24666654 66555443322 22333332 444556677777665
No 177
>PLN02949 transferase, transferring glycosyl groups
Probab=97.27 E-value=0.032 Score=64.77 Aligned_cols=95 Identities=9% Similarity=-0.051 Sum_probs=62.7
Q ss_pred CCcEEEEeCCCC--C---------------CCCCCeEECCCCC--CHHHHHhhcCEEEec---CCh-hhHHHHHHcCCcE
Q 003222 246 SGWKCLVCGASD--S---------------QLPPNFIKLPKDA--YTPDFMAASDCMLGK---IGY-GTVSEALAYKLPF 302 (838)
Q Consensus 246 ~~~~~vv~G~~~--~---------------~lp~nv~~~~~~~--~~pdlLa~adl~It~---gG~-~Tv~Eal~~GvP~ 302 (838)
++++++++|... . .+.++|.++++.+ .++++|+.||++|-. -|+ .++.|||++|+|+
T Consensus 302 ~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PV 381 (463)
T PLN02949 302 PRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVP 381 (463)
T ss_pred CCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcE
Confidence 467888887531 0 1467899888764 456899999999942 233 4799999999999
Q ss_pred EEEeCCCCCChHHHHHHHHH--cC-cEEEEecCCCChhhHHHHHHHHhhC
Q 003222 303 VFVRRDYFNEEPFLRNMLEF--YQ-GGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 303 l~iP~~~~~EQ~~Na~~l~~--~G-~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
|+....+..+. .+.. .| .|...+ +++.+.++|.+++++
T Consensus 382 Ia~~~gGp~~e-----IV~~~~~g~tG~l~~----~~~~la~ai~~ll~~ 422 (463)
T PLN02949 382 IAHNSAGPKMD-----IVLDEDGQQTGFLAT----TVEEYADAILEVLRM 422 (463)
T ss_pred EEeCCCCCcce-----eeecCCCCcccccCC----CHHHHHHHHHHHHhC
Confidence 99875432211 1111 12 244332 467899999999874
No 178
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0087 Score=55.83 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=75.0
Q ss_pred EEEEcCCCCch-hhhHH-----hhCC--CCcEEEEeCCCCCCCC-CCeEECCCCC--CHHHHHhhcCEEEecCChhhHHH
Q 003222 226 LILNFGGQPAG-WKLKE-----EYLP--SGWKCLVCGASDSQLP-PNFIKLPKDA--YTPDFMAASDCMLGKIGYGTVSE 294 (838)
Q Consensus 226 Vlvs~Gs~~~~-~~ll~-----~l~~--~~~~~vv~G~~~~~lp-~nv~~~~~~~--~~pdlLa~adl~It~gG~~Tv~E 294 (838)
++|+.|+.-.+ ..+.. .+.. ....++-+|+... .| ...++++|.. .+..+...+.++|+|+|-||+.-
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~-kpvagl~v~~F~~~~kiQsli~darIVISHaG~GSIL~ 80 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI-KPVAGLRVYGFDKEEKIQSLIHDARIVISHAGEGSILL 80 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc-ccccccEEEeechHHHHHHHhhcceEEEeccCcchHHH
Confidence 67888888543 11111 1111 2234556787533 34 3457777753 34577788999999999999999
Q ss_pred HHHcCCcEEEEeCCC-CC-----ChHHHHHHHHHcCcEEEEecCCC
Q 003222 295 ALAYKLPFVFVRRDY-FN-----EEPFLRNMLEFYQGGVEMIRRDL 334 (838)
Q Consensus 295 al~~GvP~l~iP~~~-~~-----EQ~~Na~~l~~~G~g~~l~~~~~ 334 (838)
++..++|.|++|+.. ++ .|...|..|.+.++-+..++.+.
T Consensus 81 ~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte~ 126 (161)
T COG5017 81 LLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTEL 126 (161)
T ss_pred HhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCCch
Confidence 999999999999753 22 25678999999999998886553
No 179
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=96.74 E-value=0.0056 Score=64.55 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=53.8
Q ss_pred CEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 631 SISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 631 g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
-+.|.-.+|.|-.+||.||||=-.|++.||+.+++++.+++++-.+|... .|..|- ++|||.
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~G----SGSACR------Sl~GG~ 166 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQG----SGSACR------SLYGGF 166 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhcc----Cchhhh------hhhcce
Confidence 46677778999999999999999999999999999999999999988853 366664 899995
No 180
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.65 E-value=0.0036 Score=59.21 Aligned_cols=115 Identities=21% Similarity=0.150 Sum_probs=67.2
Q ss_pred EEEEEcCCCCch---hhhHH-h---hC--CCCcEEEEeCCCCCC---C-CCCeEECCCCCCHHHHHhhcCEEEecC----
Q 003222 225 LLILNFGGQPAG---WKLKE-E---YL--PSGWKCLVCGASDSQ---L-PPNFIKLPKDAYTPDFMAASDCMLGKI---- 287 (838)
Q Consensus 225 ~Vlvs~Gs~~~~---~~ll~-~---l~--~~~~~~vv~G~~~~~---l-p~nv~~~~~~~~~pdlLa~adl~It~g---- 287 (838)
++++++|+.... ..+++ . +. .+++.+.++|...+. + .+||++.++.+.++++|+.||++|.-.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~ 82 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPDELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRFNE 82 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-S
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHHHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeCCC
Confidence 355667766532 22333 2 22 256778888875432 2 569999888766778999999999632
Q ss_pred C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 288 G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 288 G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
| .+++.|++++|+|+|+.+. ......+..+.+..+ .. +++.|.++|.++++|
T Consensus 83 ~~~~k~~e~~~~G~pvi~~~~-------~~~~~~~~~~~~~~~-~~--~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 83 GFPNKLLEAMAAGKPVIASDN-------GAEGIVEEDGCGVLV-AN--DPEELAEAIERLLND 135 (135)
T ss_dssp CC-HHHHHHHCTT--EEEEHH-------HCHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred cCcHHHHHHHHhCCCEEECCc-------chhhheeecCCeEEE-CC--CHHHHHHHHHHHhcC
Confidence 3 3689999999999999873 112345557778777 33 468999999998864
No 181
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.50 E-value=0.016 Score=67.96 Aligned_cols=120 Identities=10% Similarity=-0.035 Sum_probs=80.5
Q ss_pred CcEEEEEcCCCCch---hhhHHhh---C--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEE
Q 003222 223 VKLLILNFGGQPAG---WKLKEEY---L--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCM 283 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~---~~ll~~l---~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~ 283 (838)
++.++++.|..... ..+++++ . .+++.+.++|..... +..+|...|+. .++++++.+|++
T Consensus 318 ~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~ 396 (500)
T TIGR02918 318 KPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELY 396 (500)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEE
Confidence 34677888887653 2344432 1 257778888865421 35678888976 588999999999
Q ss_pred EecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC--CC----hhhHHHHHHHHhh
Q 003222 284 LGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD--LL----TGHWKPYLERAIS 348 (838)
Q Consensus 284 It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~--~~----~~~l~~~l~~ll~ 348 (838)
|..+ | ..+++||+++|+|+|+...... +.+.++....|.+++..+ -. .+.+.++|.++++
T Consensus 397 v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G-----~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~ 466 (500)
T TIGR02918 397 LSASTSEGFGLTLMEAVGSGLGMIGFDVNYG-----NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN 466 (500)
T ss_pred EEcCccccccHHHHHHHHhCCCEEEecCCCC-----CHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC
Confidence 9633 3 3589999999999999874311 234455556788886321 11 4678888888874
No 182
>PHA01633 putative glycosyl transferase group 1
Probab=96.42 E-value=0.012 Score=65.04 Aligned_cols=138 Identities=12% Similarity=0.045 Sum_probs=82.3
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hCC--CC----cEEEEeCCCCC---CCCCCeEECCCC-----
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YLP--SG----WKCLVCGASDS---QLPPNFIKLPKD----- 270 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~~--~~----~~~vv~G~~~~---~lp~nv~~~~~~----- 270 (838)
.++++.++.......++++.|..... ..++++ +.. ++ +.+++.|.... .++.+|+++++.
T Consensus 135 ~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~~~~~l~l~~~V~f~g~~G~~~~ 214 (335)
T PHA01633 135 PQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHKQFTQLEVPANVHFVAEFGHNSR 214 (335)
T ss_pred HHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHHHHHHcCCCCcEEEEecCCCCCH
Confidence 35666666432234566667776542 223332 221 22 35566664321 267889887432
Q ss_pred CCHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCC----h------HHHHHHHH--HcCcEEEEecCCC
Q 003222 271 AYTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNE----E------PFLRNMLE--FYQGGVEMIRRDL 334 (838)
Q Consensus 271 ~~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~E----Q------~~Na~~l~--~~G~g~~l~~~~~ 334 (838)
++++++++++|+||.-+ | ..++.||+++|+|+|+...+...| + ..++.... ..|.|..++. .
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~--~ 292 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHK--F 292 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecC--C
Confidence 34678999999999632 3 358999999999999975543333 1 11222222 3567766653 4
Q ss_pred ChhhHHHHHHHHhhCC
Q 003222 335 LTGHWKPYLERAISLK 350 (838)
Q Consensus 335 ~~~~l~~~l~~ll~~~ 350 (838)
+++.+..+|.+++...
T Consensus 293 d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 293 QIEDMANAIILAFELQ 308 (335)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 4678899998886543
No 183
>PRK14098 glycogen synthase; Provisional
Probab=96.30 E-value=0.026 Score=66.06 Aligned_cols=135 Identities=16% Similarity=0.037 Sum_probs=85.5
Q ss_pred hHHHHHHhCCCCC-CcEEEEEcCCCCch--hh-hHH---hhCCCCcEEEEeCCCCC-----------CCCCCeEECCCCC
Q 003222 210 RKEVRKELGIEDD-VKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDS-----------QLPPNFIKLPKDA 271 (838)
Q Consensus 210 ~~~~r~~l~~~~~-~~~Vlvs~Gs~~~~--~~-ll~---~l~~~~~~~vv~G~~~~-----------~lp~nv~~~~~~~ 271 (838)
+..+++.+|++.+ ...++++.|..... .+ +++ .+...+++++++|.... ..+.+|.+.++.+
T Consensus 292 k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~ 371 (489)
T PRK14098 292 KKALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFT 371 (489)
T ss_pred HHHHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 3466778888632 33466777776642 22 222 33345788888886542 1467888776544
Q ss_pred C--HHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHH
Q 003222 272 Y--TPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLER 345 (838)
Q Consensus 272 ~--~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ 345 (838)
. ++.+|+.||+|+..+ | ..+.+|||++|+|.|+....+..|... +..+..+.|..++..+ ++.+.++|.+
T Consensus 372 ~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~~~G~l~~~~d--~~~la~ai~~ 447 (489)
T PRK14098 372 DAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDKGSGFIFHDYT--PEALVAKLGE 447 (489)
T ss_pred HHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCCCceeEeCCCC--HHHHHHHHHH
Confidence 2 458999999999633 1 258899999999999876544444310 1111246788887655 5688888887
Q ss_pred Hhh
Q 003222 346 AIS 348 (838)
Q Consensus 346 ll~ 348 (838)
++.
T Consensus 448 ~l~ 450 (489)
T PRK14098 448 ALA 450 (489)
T ss_pred HHH
Confidence 663
No 184
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=96.10 E-value=0.028 Score=64.28 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=77.3
Q ss_pred CCcEEEEEcCCCCch---hhhHHh---hCC--C--CcEEEEeCCCCC---------C--CCCCeEECCCCC--CHHHHHh
Q 003222 222 DVKLLILNFGGQPAG---WKLKEE---YLP--S--GWKCLVCGASDS---------Q--LPPNFIKLPKDA--YTPDFMA 278 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~---l~~--~--~~~~vv~G~~~~---------~--lp~nv~~~~~~~--~~pdlLa 278 (838)
+.+..+++.|..... ..++++ +.. + +..+++.|.... . ...+|.++|+++ .++.+++
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~ 307 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYK 307 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHh
Confidence 345667888877653 223332 221 2 334555665432 1 234688888876 3457775
Q ss_pred h--cCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 279 A--SDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 279 ~--adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
. +|+||..+ | .++++|||++|+|+|+....+ ..+.+...+.|..+...+ +++.+.++|.++++++
T Consensus 308 ~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg------~~e~i~~~~~G~l~~~~~-~~~~la~~I~~ll~~~ 378 (407)
T cd04946 308 ENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG------TPEIVDNGGNGLLLSKDP-TPNELVSSLSKFIDNE 378 (407)
T ss_pred hcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC------cHHHhcCCCcEEEeCCCC-CHHHHHHHHHHHHhCH
Confidence 4 78888533 2 358999999999999976433 234455555788876532 3578999999998765
No 185
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.03 E-value=0.31 Score=54.09 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=69.2
Q ss_pred EEEEEcCCCCchhhhHHhhCCCCcEEEEeCCCCC--CCCCCeEECCCCC--CHHHHHhhcCEEEecC--------Ch---
Q 003222 225 LLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDS--QLPPNFIKLPKDA--YTPDFMAASDCMLGKI--------GY--- 289 (838)
Q Consensus 225 ~Vlvs~Gs~~~~~~ll~~l~~~~~~~vv~G~~~~--~lp~nv~~~~~~~--~~pdlLa~adl~It~g--------G~--- 289 (838)
.+++..|+.+.. ..+.. ..+++.++++|.... ...+||++.|+.+ .++.+|+..-.+|.-. .+
T Consensus 170 ~~i~yaG~l~k~-~~l~~-~~~~~~l~i~G~g~~~~~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~ 247 (333)
T PRK09814 170 KKINFAGNLEKS-PFLKN-WSQGIKLTVFGPNPEDLENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKY 247 (333)
T ss_pred ceEEEecChhhc-hHHHh-cCCCCeEEEECCCccccccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhc
Confidence 356667877742 22222 224577888887653 2567999888764 3456666522222211 11
Q ss_pred ---hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 290 ---GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 290 ---~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
+-+.|.|++|+|+|+.+. ...++.+++.+.|+.++ + .+.+.++|.++
T Consensus 248 ~~P~K~~~ymA~G~PVI~~~~------~~~~~~V~~~~~G~~v~--~--~~el~~~l~~~ 297 (333)
T PRK09814 248 NNPHKLSLYLAAGLPVIVWSK------AAIADFIVENGLGFVVD--S--LEELPEIIDNI 297 (333)
T ss_pred cchHHHHHHHHCCCCEEECCC------ccHHHHHHhCCceEEeC--C--HHHHHHHHHhc
Confidence 237789999999999652 35678899999999987 2 24566666654
No 186
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=95.99 E-value=0.027 Score=59.31 Aligned_cols=98 Identities=23% Similarity=0.387 Sum_probs=75.2
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV 709 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d 709 (838)
.|++|.|.+.+|.-.||||-..+..+++.++++++|++++-+|||....+ |--||+ --++--+|| ..+|
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgR------G~tSgi-Gv~afe~GG----FIVD 138 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGR------GGTSGI-GVYAFEYGG----FIVD 138 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcc------CCccce-eEEEEEECC----EEEE
Confidence 68999999999999999999999999999999999999999999877654 445663 345566777 3445
Q ss_pred ec------CC--c-eeeeeccCCCeEEEEEeCCCCCcC
Q 003222 710 CQ------PA--E-LLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 710 ~~------~~--~-~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
.. |. . .+-..++|.++.|+++=-..+|..
T Consensus 139 GGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg~ 176 (312)
T COG1907 139 GGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERGV 176 (312)
T ss_pred CCcccCcccCCCCceeeeecCCCceEEEEEecCCCccc
Confidence 21 11 1 234567889999999877766643
No 187
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.80 E-value=0.83 Score=50.16 Aligned_cols=97 Identities=16% Similarity=0.047 Sum_probs=61.0
Q ss_pred CCeEECCCC--CCHHHHHhhcCEEEecCCh-hhHHHHHHcCCcEEEEeCCCCCChH-HHHHHHHHcCcEEEEecCCCChh
Q 003222 262 PNFIKLPKD--AYTPDFMAASDCMLGKIGY-GTVSEALAYKLPFVFVRRDYFNEEP-FLRNMLEFYQGGVEMIRRDLLTG 337 (838)
Q Consensus 262 ~nv~~~~~~--~~~pdlLa~adl~It~gG~-~Tv~Eal~~GvP~l~iP~~~~~EQ~-~Na~~l~~~G~g~~l~~~~~~~~ 337 (838)
+.+.+.+.. .|..++|+.||.+|..+.. +.++||++.|+|+.+++.+.....+ .-.+.|++.|+...++...-
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~--- 285 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRD--- 285 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCccc---
Confidence 445444332 3567999999999876654 4588999999999999976422211 23467778887766553211
Q ss_pred hHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 338 HWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 338 ~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+. . ...| ...+-+.++|++|.+.+
T Consensus 286 -~~----~----~~~~-~pl~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 286 -LE----Q----WTPY-EPLDETDRVAAEIRERL 309 (311)
T ss_pred -cc----c----cccC-CCccHHHHHHHHHHHHh
Confidence 11 1 1111 25577888888887653
No 188
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=95.69 E-value=1.2 Score=50.04 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=57.7
Q ss_pred CeEECCCCCCHHHHHhhcCEEEe------cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh
Q 003222 263 NFIKLPKDAYTPDFMAASDCMLG------KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336 (838)
Q Consensus 263 nv~~~~~~~~~pdlLa~adl~It------~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~ 336 (838)
+|.+.+-...|-.++..+|+.+- .|| --..|++++|+|+|+=| ..+.|...++++++.|+++.++. .
T Consensus 301 dV~l~DtmGEL~l~y~~adiAFVGGSlv~~GG-HN~LEpa~~~~pvi~Gp--~~~Nf~ei~~~l~~~ga~~~v~~----~ 373 (419)
T COG1519 301 DVLLGDTMGELGLLYGIADIAFVGGSLVPIGG-HNPLEPAAFGTPVIFGP--YTFNFSDIAERLLQAGAGLQVED----A 373 (419)
T ss_pred cEEEEecHhHHHHHHhhccEEEECCcccCCCC-CChhhHHHcCCCEEeCC--ccccHHHHHHHHHhcCCeEEECC----H
Confidence 45543322334467778887663 344 45889999999999988 45567789999999999999975 2
Q ss_pred hhHHHHHHHHhhCC
Q 003222 337 GHWKPYLERAISLK 350 (838)
Q Consensus 337 ~~l~~~l~~ll~~~ 350 (838)
+.+...++.++.++
T Consensus 374 ~~l~~~v~~l~~~~ 387 (419)
T COG1519 374 DLLAKAVELLLADE 387 (419)
T ss_pred HHHHHHHHHhcCCH
Confidence 45666676666543
No 189
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=95.16 E-value=0.028 Score=57.88 Aligned_cols=114 Identities=18% Similarity=0.312 Sum_probs=72.6
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhh-------hcCCCCC------------
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENH-------IVGAPCG------------ 690 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~-------~~G~~~G------------ 690 (838)
.+-.+.+...||.|+|+|||++..++-+...++...+.+++-....++...|++ .+|--||
T Consensus 93 ~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~ 172 (355)
T KOG1537|consen 93 ITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAK 172 (355)
T ss_pred cceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhh
Confidence 456788889999999999999999999999888888888777666666666653 1111111
Q ss_pred ----hhhHH-HhhcCCCCeEEEEEecCCceeeeeccC--CCeEEEEE------eCCCCCcCCCCchhh
Q 003222 691 ----VMDQM-ASACGEANKLLAMVCQPAELLGVVEIP--SHIRFWGI------DSGIRHSVGGADYGS 745 (838)
Q Consensus 691 ----~mDq~-a~~~G~~~~~l~~d~~~~~~~~~v~~~--~~~~~vi~------~s~~~~~~~~~~y~~ 745 (838)
-.|+. ...+||. .+....-|.+...++.+| .++.++++ .|...|.....+|..
T Consensus 173 ~~~~~ad~ilp~~~gg~--~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k~R~vLPt~yp~ 238 (355)
T KOG1537|consen 173 VSGYHADNILPAIMGGF--VLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKKMRAVLPTEYPM 238 (355)
T ss_pred hcCCCHHHhcccccCCe--eeecCCCcccccccccCCCCccceEEEEeccccccchhhhhhcCccccc
Confidence 13444 3556663 222222333333345555 45666654 477778777766543
No 190
>PHA01630 putative group 1 glycosyl transferase
Probab=94.20 E-value=0.29 Score=54.31 Aligned_cols=68 Identities=16% Similarity=0.002 Sum_probs=42.4
Q ss_pred CCcEEEEeCCCCCCC-CCCeE-ECCCC--CCHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCCh
Q 003222 246 SGWKCLVCGASDSQL-PPNFI-KLPKD--AYTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEE 313 (838)
Q Consensus 246 ~~~~~vv~G~~~~~l-p~nv~-~~~~~--~~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ 313 (838)
+++.+++.|...... -.++. +.++. +.++++|+.||+||.- +...++.|||++|+|+|+....+..|.
T Consensus 172 ~~~~llivG~~~~~~~l~~~~~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~ 247 (331)
T PHA01630 172 YDFYFLIKSSNMLDPRLFGLNGVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEW 247 (331)
T ss_pred CCEEEEEEeCcccchhhccccceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhh
Confidence 466777778543221 01211 11112 3566899999999952 224589999999999999885444443
No 191
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=93.69 E-value=1.3 Score=47.51 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=41.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCC----------CCCH---HHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 643 GKGVSSSASVEVASMSAIAAAHGL----------NIHP---RDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 643 g~GLgSSAA~~va~~~al~~l~~~----------~l~~---~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
.-|||||||+..++..++...+|. +++. .-+-.+||.+--...|+-...-|-.++++|..
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS~ 224 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQ 224 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccce
Confidence 479999999999999777766642 1332 23345666655555675533369999999985
No 192
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=93.62 E-value=2.4 Score=44.44 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=79.9
Q ss_pred HHHHhcCCCcEEE-ECCCchH------HHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccceEEe
Q 003222 111 VEWLNSIKADLVV-SDVVPVA------CRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIR 183 (838)
Q Consensus 111 ~~~L~~~kPDlVV-sD~~~~~------~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d~ll~ 183 (838)
.++|++.+.|+|| ..|+|.+ ..+|+.+|||++.+..-.|... .+
T Consensus 59 ~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~-------------------------gd---- 109 (257)
T COG2099 59 AAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPN-------------------------GD---- 109 (257)
T ss_pred HHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccC-------------------------CC----
Confidence 6678999999999 5566653 4577889999998755444210 00
Q ss_pred cCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCCC-CcEEEEeCCCCC----
Q 003222 184 LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLPS-GWKCLVCGASDS---- 258 (838)
Q Consensus 184 ~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~~-~~~~vv~G~~~~---- 258 (838)
+++.++ +-+++-+.... -.+.|+++.|+.... .+...... .|.+.+.-....
T Consensus 110 -----------~~~~V~--------d~~ea~~~~~~--~~~rVflt~G~~~l~--~f~~~~~~~~~~~Rvlp~~~~~~~~ 166 (257)
T COG2099 110 -----------NWIEVA--------DIEEAAEAAKQ--LGRRVFLTTGRQNLA--HFVAADAHSHVLARVLPPPDVLAKC 166 (257)
T ss_pred -----------ceEEec--------CHHHHHHHHhc--cCCcEEEecCccchH--HHhcCcccceEEEEEcCchHHHHHH
Confidence 111111 01122222221 114688898877652 11122112 222223221111
Q ss_pred ---CC-CCCeEEC--CCCCCHH-HHHh--hcCEEEecCChhh------HHHHHHcCCcEEEEeCC
Q 003222 259 ---QL-PPNFIKL--PKDAYTP-DFMA--ASDCMLGKIGYGT------VSEALAYKLPFVFVRRD 308 (838)
Q Consensus 259 ---~l-p~nv~~~--~~~~~~p-dlLa--~adl~It~gG~~T------v~Eal~~GvP~l~iP~~ 308 (838)
.+ +.++.-. +|...+. .+|. .+|++||+--.++ +.-|..+|+|+|+|.++
T Consensus 167 ~~~~~p~~~Iia~~GPfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 167 EDLGVPPARIIAMRGPFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HhcCCChhhEEEecCCcChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 12 3444433 5655554 4554 4999999733232 55688999999999987
No 193
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.08 E-value=8.5 Score=42.51 Aligned_cols=93 Identities=16% Similarity=0.372 Sum_probs=57.7
Q ss_pred HHHHhCCCCCCcEEEEEcCCC-Cc--hh------hhHHhhCCCCcEEEEeCCCCCC---------CCCCeE-ECCCCC--
Q 003222 213 VRKELGIEDDVKLLILNFGGQ-PA--GW------KLKEEYLPSGWKCLVCGASDSQ---------LPPNFI-KLPKDA-- 271 (838)
Q Consensus 213 ~r~~l~~~~~~~~Vlvs~Gs~-~~--~~------~ll~~l~~~~~~~vv~G~~~~~---------lp~nv~-~~~~~~-- 271 (838)
+.+.++++.++++|.+..|+. +. .| ++.+.+...+..++++|...+. .+.++. ..+..+
T Consensus 164 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~ 243 (334)
T TIGR02195 164 ALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLD 243 (334)
T ss_pred HHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHH
Confidence 445566665678888888874 22 12 2333444445677777754321 233332 223221
Q ss_pred CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 272 ~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.+..+|+.||+|||.=. |-+.=|.+.|+|+|.+=
T Consensus 244 el~ali~~a~l~I~~DS-Gp~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 244 EAVDLIALAKAVVTNDS-GLMHVAAALNRPLVALY 277 (334)
T ss_pred HHHHHHHhCCEEEeeCC-HHHHHHHHcCCCEEEEE
Confidence 23467889999999544 67888999999999985
No 194
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=93.00 E-value=1.1 Score=42.32 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=56.1
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 96 (838)
||+++.... ..| ...+++.|.++|++|++++..... .......++.+... ..+ ... .+ .+.
T Consensus 1 KIl~i~~~~-~~~---~~~~~~~L~~~g~~V~ii~~~~~~--~~~~~~~~i~~~~~--~~~--------~k~--~~-~~~ 61 (139)
T PF13477_consen 1 KILLIGNTP-STF---IYNLAKELKKRGYDVHIITPRNDY--EKYEIIEGIKVIRL--PSP--------RKS--PL-NYI 61 (139)
T ss_pred CEEEEecCc-HHH---HHHHHHHHHHCCCEEEEEEcCCCc--hhhhHhCCeEEEEe--cCC--------CCc--cH-HHH
Confidence 355554434 234 567899999999999999885432 11111123333331 100 000 01 111
Q ss_pred HHhhccHHHHHHHHHHHHhcCCCcEEEECC-Cc---hHHHHHHHhC-CcEEEE
Q 003222 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDV-VP---VACRAAADAG-IRSVCV 144 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~---~~~~aA~~lg-IP~V~i 144 (838)
. . .+...++++.+||+|.+.. .+ .+.++++..+ +|.+..
T Consensus 62 ~--------~-~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 62 K--------Y-FRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred H--------H-HHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 1 1 2446778999999999775 32 2445667788 888754
No 195
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=92.80 E-value=15 Score=38.96 Aligned_cols=151 Identities=20% Similarity=0.196 Sum_probs=81.0
Q ss_pred HHHHhcCCCcEEE-ECCCchH------HHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccceEEe
Q 003222 111 VEWLNSIKADLVV-SDVVPVA------CRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIR 183 (838)
Q Consensus 111 ~~~L~~~kPDlVV-sD~~~~~------~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d~ll~ 183 (838)
.++|++.++++|| ..|+|+. ..+|+.+|||++.+..-.|... ..+
T Consensus 59 ~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~------------------------~~~---- 110 (249)
T PF02571_consen 59 AEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPE------------------------PDD---- 110 (249)
T ss_pred HHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccC------------------------CCC----
Confidence 5678899999999 5566653 4577888999988744333100 000
Q ss_pred cCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCCCC-cEEEEeCCCCCC--C
Q 003222 184 LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLPSG-WKCLVCGASDSQ--L 260 (838)
Q Consensus 184 ~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~~~-~~~vv~G~~~~~--l 260 (838)
+++.+. +-+++-+.+.. .+...||++.|+.... .+........ +.+.+.-..... +
T Consensus 111 -----------~~~~v~--------~~~eA~~~l~~-~~~~~iflttGsk~L~-~f~~~~~~~~r~~~RvLp~~~~~~g~ 169 (249)
T PF02571_consen 111 -----------NWHYVD--------SYEEAAELLKE-LGGGRIFLTTGSKNLP-PFVPAPLPGERLFARVLPTPESALGF 169 (249)
T ss_pred -----------eEEEeC--------CHHHHHHHHhh-cCCCCEEEeCchhhHH-HHhhcccCCCEEEEEECCCccccCCC
Confidence 111110 11233333321 1224689999987763 2222111111 222232111112 2
Q ss_pred -CCCeEEC--CCCCCHH-HHHhh--cCEEEecCChh-h----HHHHHHcCCcEEEEeCCCC
Q 003222 261 -PPNFIKL--PKDAYTP-DFMAA--SDCMLGKIGYG-T----VSEALAYKLPFVFVRRDYF 310 (838)
Q Consensus 261 -p~nv~~~--~~~~~~p-dlLa~--adl~It~gG~~-T----v~Eal~~GvP~l~iP~~~~ 310 (838)
+.|+... +|...+. .++.. +|++||+--++ + +.-|..+|+|+|+|-++..
T Consensus 170 ~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~ 230 (249)
T PF02571_consen 170 PPKNIIAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPE 230 (249)
T ss_pred ChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC
Confidence 4565533 5554444 56654 99999973222 2 3458899999999998743
No 196
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.73 E-value=0.95 Score=45.12 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHhcCCCcEEEECC---CchHHHHHHHh------CCcEEEEecCc
Q 003222 110 EVEWLNSIKADLVVSDV---VPVACRAAADA------GIRSVCVTNFS 148 (838)
Q Consensus 110 ~~~~L~~~kPDlVVsD~---~~~~~~aA~~l------gIP~V~is~~~ 148 (838)
...++.+.+||+||+.- ..+.+++|+.+ +.+.|.+..++
T Consensus 84 ~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 84 SLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 35667889999999885 33456678888 99999986543
No 197
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.21 E-value=18 Score=38.31 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=50.6
Q ss_pred HHHHhhcCEEEecCC-hhhHHHHHHcCCcEEEEeCCCCC-ChHH-HHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 274 PDFMAASDCMLGKIG-YGTVSEALAYKLPFVFVRRDYFN-EEPF-LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 274 pdlLa~adl~It~gG-~~Tv~Eal~~GvP~l~iP~~~~~-EQ~~-Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+++|+++|.+|..+. -+..+||++.|+|+-+.-.+.+. .-+. --+.|++.+++...+...+ ++++.
T Consensus 239 ~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~~~~-------~~e~y---- 307 (329)
T COG3660 239 IDMLAAADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEGSNL-------ALEEY---- 307 (329)
T ss_pred HHHHhhcceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCcchh-------hhccc----
Confidence 399999999997665 45688999999999887654442 1111 1233455555544332111 11111
Q ss_pred CCccCCCCHHHHHHHHHHHHh
Q 003222 351 PCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 351 ~~~~~~~~g~~~~a~~i~~~~ 371 (838)
.| ...+-++++|+.|...+
T Consensus 308 -sy-~PLnEt~RiA~~Ira~l 326 (329)
T COG3660 308 -SY-KPLNETERIAEEIRAEL 326 (329)
T ss_pred -cc-CCchHHHHHHHHHHHHh
Confidence 11 35677888888776653
No 198
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=92.04 E-value=0.6 Score=44.46 Aligned_cols=97 Identities=26% Similarity=0.251 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHHHH
Q 003222 28 GHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSIL 107 (838)
Q Consensus 28 GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 107 (838)
|--.....++++|.++||+|++++..+...... ....++.+.... .. ... .....+ ...
T Consensus 2 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~--~~--~~~----~~~~~~------------~~~ 60 (160)
T PF13579_consen 2 GIERYVRELARALAARGHEVTVVTPQPDPEDDE-EEEDGVRVHRLP--LP--RRP----WPLRLL------------RFL 60 (160)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S-EEETTEEEEEE----S---SS----SGGGHC------------CHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc-cccCCceEEecc--CC--ccc----hhhhhH------------HHH
Confidence 445667899999999999999998754222111 111233333211 00 000 000000 011
Q ss_pred HHHHHHH--hcCCCcEEEECCCc---hHHHHHHHhCCcEEEEe
Q 003222 108 KDEVEWL--NSIKADLVVSDVVP---VACRAAADAGIRSVCVT 145 (838)
Q Consensus 108 ~~~~~~L--~~~kPDlVVsD~~~---~~~~aA~~lgIP~V~is 145 (838)
....+++ ++.+||+|++.... .+.++....++|.|...
T Consensus 61 ~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 61 RRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 2224445 78999999987632 23333337799998764
No 199
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=91.91 E-value=12 Score=41.62 Aligned_cols=91 Identities=14% Similarity=0.266 Sum_probs=54.9
Q ss_pred HHHhCCCCCCcEEEEEcCCC-Cc--hh------hhHHhhCCCCcEEEEeCCCCCC---------CCC----CeE-ECCCC
Q 003222 214 RKELGIEDDVKLLILNFGGQ-PA--GW------KLKEEYLPSGWKCLVCGASDSQ---------LPP----NFI-KLPKD 270 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~-~~--~~------~ll~~l~~~~~~~vv~G~~~~~---------lp~----nv~-~~~~~ 270 (838)
.+.+++.+++++|.+..|+. +. .| ++.+.+...++.++++|...+. ++. ++. ..+..
T Consensus 171 ~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~ 250 (348)
T PRK10916 171 CAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGET 250 (348)
T ss_pred HHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCC
Confidence 34445444678888888874 22 22 2333444456677777654321 221 222 22332
Q ss_pred CCHH---HHHhhcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 271 AYTP---DFMAASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 271 ~~~p---dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.+. .+|+.|++|||.=. |-+.=|.+.|+|+|.+=
T Consensus 251 -sL~el~ali~~a~l~I~nDT-Gp~HlAaA~g~P~valf 287 (348)
T PRK10916 251 -QLEQAVILIAACKAIVTNDS-GLMHVAAALNRPLVALY 287 (348)
T ss_pred -CHHHHHHHHHhCCEEEecCC-hHHHHHHHhCCCEEEEE
Confidence 344 67788999999433 67888999999999974
No 200
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.89 E-value=20 Score=38.25 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCCeEEC--CCCCCHH-HHHhh--cCEEEec--CChhh----HHHHHHcCCcEEEEeCCC
Q 003222 261 PPNFIKL--PKDAYTP-DFMAA--SDCMLGK--IGYGT----VSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 261 p~nv~~~--~~~~~~p-dlLa~--adl~It~--gG~~T----v~Eal~~GvP~l~iP~~~ 309 (838)
+.|+..+ +|...+. .++.+ +|++||+ ||.|. +.-|..+|+|+|+|.++.
T Consensus 174 ~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 174 SDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred hhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC
Confidence 4565533 5554444 56664 9999996 23222 445778899999999874
No 201
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=91.55 E-value=0.48 Score=54.51 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHhCCCCCCcEEEEEcCCCCc-hhhhHH---hhC--CCCcEE-EEeCCCCCC-----------C-CCCeEECCCCCCHH
Q 003222 214 RKELGIEDDVKLLILNFGGQPA-GWKLKE---EYL--PSGWKC-LVCGASDSQ-----------L-PPNFIKLPKDAYTP 274 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~-~~~ll~---~l~--~~~~~~-vv~G~~~~~-----------l-p~nv~~~~~~~~~p 274 (838)
|+.+|++ +..++|.+|....+ ..+.+. +++ -|+-++ +........ + ++.+.+.+..+ ..
T Consensus 276 R~~~gLp-~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ 353 (468)
T PF13844_consen 276 RAQYGLP-EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAP-RE 353 (468)
T ss_dssp TGGGT---SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE----HH
T ss_pred HHHcCCC-CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCC-HH
Confidence 6778997 55688888875544 112222 121 133333 333322110 2 45566654332 23
Q ss_pred HHH---hhcCEEEe---cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE
Q 003222 275 DFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE 328 (838)
Q Consensus 275 dlL---a~adl~It---~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~ 328 (838)
+.| ..+|+++- .+|.+|++||+++|||+|.++-..+.- ..-+..|...|+...
T Consensus 354 ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~s-R~~aSiL~~lGl~El 412 (468)
T PF13844_consen 354 EHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMAS-RVGASILRALGLPEL 412 (468)
T ss_dssp HHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGG-SHHHHHHHHHT-GGG
T ss_pred HHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchh-HHHHHHHHHcCCchh
Confidence 454 45999994 357799999999999999999443332 245677888888743
No 202
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.36 E-value=16 Score=39.18 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=29.0
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCC--CeEEEEeCCC
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAG--HDVHVVTGAP 54 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~G--h~V~~v~~~~ 54 (838)
||++-.+ +.|-+....++.++|+++. .+|++++...
T Consensus 2 ILii~~~-~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~ 39 (279)
T cd03789 2 ILVIRLS-WIGDVVLATPLLRALKARYPDARITVLAPPW 39 (279)
T ss_pred EEEEecc-cHHHHHHHHHHHHHHHHHCCCCEEEEEEChh
Confidence 5555444 8999999999999999985 6899988753
No 203
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=90.27 E-value=1.5 Score=44.69 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=24.4
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|+||+ +.--|. +..-..+|+++|.+.||+|+++.+.
T Consensus 1 M~ILl-TNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~ 36 (196)
T PF01975_consen 1 MRILL-TNDDGI-DAPGIRALAKALSALGHDVVVVAPD 36 (196)
T ss_dssp SEEEE-E-SS-T-TSHHHHHHHHHHTTTSSEEEEEEES
T ss_pred CeEEE-EcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 45644 344443 4445678999998778999999775
No 204
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=1.3 Score=51.27 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=68.1
Q ss_pred HHHhCCCCCCcEEEEEcCCCCch-hhhHHh---h---CCCCcEEEEeCCCCCC-------------C-CCCeEECCCCCC
Q 003222 214 RKELGIEDDVKLLILNFGGQPAG-WKLKEE---Y---LPSGWKCLVCGASDSQ-------------L-PPNFIKLPKDAY 272 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~~-~~ll~~---l---~~~~~~~vv~G~~~~~-------------l-p~nv~~~~~~~~ 272 (838)
|..+|++ +.-+||++|++..+- .+++.. + .|..+.++..|..+++ + ++.+++.+..+.
T Consensus 421 R~~lglp-~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 421 RAQLGLP-EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred hhhcCCC-CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCC
Confidence 4568886 667899999877652 233331 1 1233333333432221 1 456666665543
Q ss_pred HHHHH---hhcCEEEe---cCChhhHHHHHHcCCcEEEEeCCCCCChHH--H-HHHHHHcCcEEEEe
Q 003222 273 TPDFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPF--L-RNMLEFYQGGVEMI 330 (838)
Q Consensus 273 ~pdlL---a~adl~It---~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~--N-a~~l~~~G~g~~l~ 330 (838)
++.. .-+|+|.- -+|.+|+.|++.+|+|||..+ +||+. | +..+...|+-..+-
T Consensus 500 -~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~----G~~FasR~~~si~~~agi~e~vA 561 (620)
T COG3914 500 -EDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV----GEQFASRNGASIATNAGIPELVA 561 (620)
T ss_pred -HHHHHhhchhheeeecccCCCccchHHHHHhcCceeeec----cHHHHHhhhHHHHHhcCCchhhc
Confidence 3444 45999995 478899999999999999986 57753 2 24445666654443
No 205
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=90.04 E-value=6.9 Score=43.04 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCC
Q 003222 246 SGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 246 ~~~~~vv~G~~~~~-----------lp~nv~~~~~~~--~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~ 308 (838)
++.+|++.|..+.. +.+.|.+++-++ .+-+.|..=|+|+..+ =..++.||+.||+|++.....
T Consensus 225 p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVG 304 (426)
T KOG1111|consen 225 PEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVG 304 (426)
T ss_pred CCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecC
Confidence 56788888877631 567777776553 3458999999999532 224788999999999998754
Q ss_pred CCCC
Q 003222 309 YFNE 312 (838)
Q Consensus 309 ~~~E 312 (838)
+-.|
T Consensus 305 GIpe 308 (426)
T KOG1111|consen 305 GIPE 308 (426)
T ss_pred Cccc
Confidence 4333
No 206
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.86 E-value=36 Score=37.71 Aligned_cols=83 Identities=23% Similarity=0.440 Sum_probs=53.7
Q ss_pred CcEEEEEcC-CCCch--h------hhHHhhCCCCcEEEEeCCCCCC---------CCCCeEECCCCC--CHHHHHhhcCE
Q 003222 223 VKLLILNFG-GQPAG--W------KLKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDA--YTPDFMAASDC 282 (838)
Q Consensus 223 ~~~Vlvs~G-s~~~~--~------~ll~~l~~~~~~~vv~G~~~~~---------lp~nv~~~~~~~--~~pdlLa~adl 282 (838)
++.|++..| +.+.. + ++.+.+....+.++++|...+. .+..+.+.+..+ .+..+++.||+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 688999888 55332 2 3334455556788888765421 222222344432 23367789999
Q ss_pred EEecCChhhHHHHHHcCCcEEEEe
Q 003222 283 MLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 283 ~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
|||.-. |-+.=|.+.|+|+|++-
T Consensus 255 ~I~~DS-g~~HlAaA~~~P~I~iy 277 (334)
T COG0859 255 VIGNDS-GPMHLAAALGTPTIALY 277 (334)
T ss_pred EEccCC-hHHHHHHHcCCCEEEEE
Confidence 998443 67888999999999986
No 207
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=89.73 E-value=0.38 Score=47.77 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCcEEEECCCchHHH-HH----H-Hh-CCcEEE-EecC
Q 003222 107 LKDEVEWLNSIKADLVVSDVVPVACR-AA----A-DA-GIRSVC-VTNF 147 (838)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~~~~~~-aA----~-~l-gIP~V~-is~~ 147 (838)
.+...++|++.+||+||+.+++++.. ++ + .. ++|+++ +|||
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 34557889999999999999765444 33 1 23 588765 4777
No 208
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.22 E-value=0.83 Score=53.03 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=51.2
Q ss_pred CHHHHHhhcCEEEecC---Chh-hHHHHHHcCCc----EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 272 YTPDFMAASDCMLGKI---GYG-TVSEALAYKLP----FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 ~~pdlLa~adl~It~g---G~~-Tv~Eal~~GvP----~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++.+++.||+||..+ |+| ++.||+++|+| +|+-...+..++ + +.|+.+++.+ ++.+.++|
T Consensus 348 el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~------l---~~gllVnP~d--~~~lA~aI 416 (456)
T TIGR02400 348 ELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE------L---NGALLVNPYD--IDGMADAI 416 (456)
T ss_pred HHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH------h---CCcEEECCCC--HHHHHHHH
Confidence 4568889999999743 655 78899999999 777665444433 3 2578888776 46899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++++++
T Consensus 417 ~~aL~~~ 423 (456)
T TIGR02400 417 ARALTMP 423 (456)
T ss_pred HHHHcCC
Confidence 9999765
No 209
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=89.19 E-value=3.8 Score=39.60 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
.|--.-+..|+++|+++||+|++++..
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 466666779999999999999999775
No 210
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=88.22 E-value=47 Score=36.95 Aligned_cols=84 Identities=10% Similarity=0.209 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCc--hh------hhHHhhCCCCcEEEEeC-CCCCC----------C-CCCe-EECCCCC--CHHHHHh
Q 003222 222 DVKLLILNFGGQPA--GW------KLKEEYLPSGWKCLVCG-ASDSQ----------L-PPNF-IKLPKDA--YTPDFMA 278 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~--~~------~ll~~l~~~~~~~vv~G-~~~~~----------l-p~nv-~~~~~~~--~~pdlLa 278 (838)
+.++|.+..|+... .| ++.+.+...+..++++| +...+ . ..++ ...+..+ .+..+|+
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 35678888776543 12 23334444466666664 33211 1 1122 2334332 2347788
Q ss_pred hcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 279 ASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 279 ~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.||+|||.=. |-+.=|.+.|+|+|++=
T Consensus 262 ~a~l~v~nDS-Gp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 262 HAQLFIGVDS-APAHIAAAVNTPLICLF 288 (352)
T ss_pred hCCEEEecCC-HHHHHHHHcCCCEEEEE
Confidence 9999999544 67888999999999975
No 211
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=85.11 E-value=5.8 Score=41.61 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=47.9
Q ss_pred CCCcEEEEEcCCCCch--h------hhHHhhCCCCcEEEEeCCCCC--C---------CCC-CeEECCCCCCHH---HHH
Q 003222 221 DDVKLLILNFGGQPAG--W------KLKEEYLPSGWKCLVCGASDS--Q---------LPP-NFIKLPKDAYTP---DFM 277 (838)
Q Consensus 221 ~~~~~Vlvs~Gs~~~~--~------~ll~~l~~~~~~~vv~G~~~~--~---------lp~-nv~~~~~~~~~p---dlL 277 (838)
.+++.|++..|+.... + ++.+.+....+.++++|...+ . .+. .+.+.+.. .+. .++
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~e~~ali 181 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKT-SLRELAALI 181 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS--HHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCC-CHHHHHHHH
Confidence 4677888888776542 1 334455555566677665443 1 122 34444433 344 677
Q ss_pred hhcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 278 AASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 278 a~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
+.||++||.-. +.+.=|.+.|+|+|++=
T Consensus 182 ~~a~~~I~~Dt-g~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 182 SRADLVIGNDT-GPMHLAAALGTPTVALF 209 (247)
T ss_dssp HTSSEEEEESS-HHHHHHHHTT--EEEEE
T ss_pred hcCCEEEecCC-hHHHHHHHHhCCEEEEe
Confidence 88999999555 78889999999999984
No 212
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=84.44 E-value=71 Score=35.33 Aligned_cols=84 Identities=12% Similarity=0.166 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCc--hh------hhHHhhCCCCcEEEEeCCCC--C-----C----CCC-CeE-ECCCCC--CHHHHHh
Q 003222 222 DVKLLILNFGGQPA--GW------KLKEEYLPSGWKCLVCGASD--S-----Q----LPP-NFI-KLPKDA--YTPDFMA 278 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~--~~------~ll~~l~~~~~~~vv~G~~~--~-----~----lp~-nv~-~~~~~~--~~pdlLa 278 (838)
+++.|.+..|+... .+ ++.+.+...+..++++|... + . .+. ++. +.+..+ .+..+|+
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 259 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALID 259 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHH
Confidence 45778888776543 12 33344444466677766422 1 0 122 232 233321 2336778
Q ss_pred hcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 279 ASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 279 ~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.||+|||.=. |.+.=|.+.|+|+|.+=
T Consensus 260 ~a~l~Vs~DS-Gp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 260 HARLFIGVDS-VPMHMAAALGTPLVALF 286 (344)
T ss_pred hCCEEEecCC-HHHHHHHHcCCCEEEEE
Confidence 9999999644 78889999999999985
No 213
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=81.23 E-value=79 Score=33.55 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=46.0
Q ss_pred cEEEEEcCCCCchhhhHHhhCCCCcEE-EEeCCCC--CCC-CCCeEEC--CCCCCHH-HHHhh--cCEEEecCChh-h--
Q 003222 224 KLLILNFGGQPAGWKLKEEYLPSGWKC-LVCGASD--SQL-PPNFIKL--PKDAYTP-DFMAA--SDCMLGKIGYG-T-- 291 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~~~ll~~l~~~~~~~-vv~G~~~--~~l-p~nv~~~--~~~~~~p-dlLa~--adl~It~gG~~-T-- 291 (838)
+.||++.|+.... .+... ......+ .+.-... ..+ +.|+..+ +|...+. .++.+ +|++||+-.++ .
T Consensus 128 ~~vllttGsk~l~-~f~~~-~~~~r~~~RvLP~~~s~~g~~~~~iiam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~ 205 (248)
T PRK08057 128 RRVLLTTGRQPLA-HFAAI-LPEHRLLVRVLPPPEVLLGLPRAEIIALRGPFSLELERALLRQHRIDVVVTKNSGGAGTE 205 (248)
T ss_pred CCEEEecCcchHH-HHhhc-CCCCEEEEEECCCchhcCCCChhhEEEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhH
Confidence 4689999987652 12111 2222222 2221111 012 3565433 4544444 56664 99999974323 2
Q ss_pred --HHHHHHcCCcEEEEeCCC
Q 003222 292 --VSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 292 --v~Eal~~GvP~l~iP~~~ 309 (838)
+.-|..+|+|+|+|-++.
T Consensus 206 eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 206 AKLEAARELGIPVVMIARPA 225 (248)
T ss_pred HHHHHHHHcCCeEEEEeCCC
Confidence 345778899999999874
No 214
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=80.67 E-value=1.6 Score=50.70 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=49.0
Q ss_pred CHHHHHhhcCEEEec---CChh-hHHHHHHcCCc----EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 272 YTPDFMAASDCMLGK---IGYG-TVSEALAYKLP----FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 ~~pdlLa~adl~It~---gG~~-Tv~Eal~~GvP----~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++.+|+.||+||.. -|+| ++.||+++|+| +|+-...+..++ ...|+.+++.+ .+.+.++|
T Consensus 353 el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---------~~~g~lv~p~d--~~~la~ai 421 (460)
T cd03788 353 ELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---------LSGALLVNPYD--IDEVADAI 421 (460)
T ss_pred HHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh---------cCCCEEECCCC--HHHHHHHH
Confidence 566889999999963 3544 78899999999 655543333333 23477788766 46899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++++++
T Consensus 422 ~~~l~~~ 428 (460)
T cd03788 422 HRALTMP 428 (460)
T ss_pred HHHHcCC
Confidence 9999765
No 215
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=79.68 E-value=3.6 Score=44.07 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=36.9
Q ss_pred CCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCC
Q 003222 262 PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF 310 (838)
Q Consensus 262 ~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~ 310 (838)
.++.++.....+.++|.+||.+||-.+ ++-.||+.+|+|++++-.+.+
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~VvtinS-tvGlEAll~gkpVi~~G~~~Y 229 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDAVVTINS-TVGLEALLHGKPVIVFGRAFY 229 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCEEEEECC-HHHHHHHHcCCceEEecCccc
Confidence 344443333356799999999999777 788999999999999876543
No 216
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=78.74 E-value=13 Score=39.45 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=32.0
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
++++....|.|..+-+.++|..++++|++|.++...+
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 4556777889999999999999999999999997765
No 217
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=77.67 E-value=9.4 Score=44.52 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=84.2
Q ss_pred hHHHHHHhCCCCCCc-EEEEEcCCCCc--hh----hhHHhhCCCCcEEEEeCCCCCC-----------CCCCeEE-CCCC
Q 003222 210 RKEVRKELGIEDDVK-LLILNFGGQPA--GW----KLKEEYLPSGWKCLVCGASDSQ-----------LPPNFIK-LPKD 270 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~-~Vlvs~Gs~~~--~~----~ll~~l~~~~~~~vv~G~~~~~-----------lp~nv~~-~~~~ 270 (838)
+..+++.++++.+.+ .++...|.... +. +.+..++...+++++.|...+. .|.++.+ .+|.
T Consensus 279 k~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~ 358 (487)
T COG0297 279 KVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYD 358 (487)
T ss_pred HHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeec
Confidence 456778889875444 34445554443 22 2233455566889999887542 3555543 3443
Q ss_pred CCHH-HHHhhcCEEEe-----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHH--HHHHHcCcEEEEecCCCChhhHHHH
Q 003222 271 AYTP-DFMAASDCMLG-----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLR--NMLEFYQGGVEMIRRDLLTGHWKPY 342 (838)
Q Consensus 271 ~~~p-dlLa~adl~It-----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na--~~l~~~G~g~~l~~~~~~~~~l~~~ 342 (838)
.-+. .+++.+|+++- -+| .|-++||.+|.+-|+.+..+-.|--... ......|.|...... +++.+..+
T Consensus 359 ~~la~~i~agaD~~lmPSrfEPcG-L~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~--~~~~l~~a 435 (487)
T COG0297 359 EPLAHLIYAGADVILMPSRFEPCG-LTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQT--NPDHLANA 435 (487)
T ss_pred HHHHHHHHhcCCEEEeCCcCcCCc-HHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecC--CHHHHHHH
Confidence 3222 56678999996 357 6899999999988887765544431111 112445777777654 57888889
Q ss_pred HHHHhh
Q 003222 343 LERAIS 348 (838)
Q Consensus 343 l~~ll~ 348 (838)
|.+.+.
T Consensus 436 l~rA~~ 441 (487)
T COG0297 436 LRRALV 441 (487)
T ss_pred HHHHHH
Confidence 988775
No 218
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.03 E-value=5.3 Score=42.81 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=50.2
Q ss_pred HHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChH--HHHHHH-HHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 273 TPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEP--FLRNML-EFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 273 ~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~--~Na~~l-~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
+.|+|.++|+.|+.+| ..+-.++-.|||+|.+| ..+-|+ .-|++- .-.|+.+.+-.... +.-....++++.+
T Consensus 305 fadiLH~adaalgmAG-TAtEQavGLGkPvi~fP--g~GPQy~pgFA~rQ~rLLG~sltlv~~~a--q~a~~~~q~ll~d 379 (412)
T COG4370 305 FADILHAADAALGMAG-TATEQAVGLGKPVIGFP--GQGPQYNPGFAERQQRLLGASLTLVRPEA--QAAAQAVQELLGD 379 (412)
T ss_pred HHHHHHHHHHHHHhcc-chHHHhhccCCceeecC--CCCCCcChHHHHHHHHHhcceeeecCCch--hhHHHHHHHHhcC
Confidence 4599999999999999 56677889999999999 555552 223332 34588877654442 2223344458877
Q ss_pred CCC
Q 003222 350 KPC 352 (838)
Q Consensus 350 ~~~ 352 (838)
+.+
T Consensus 380 p~r 382 (412)
T COG4370 380 PQR 382 (412)
T ss_pred hHH
Confidence 744
No 219
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=75.56 E-value=5.5 Score=49.58 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=49.4
Q ss_pred HHHHHhhcCEEEecC---Chh-hHHHHHHcCCc----EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHH
Q 003222 273 TPDFMAASDCMLGKI---GYG-TVSEALAYKLP----FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLE 344 (838)
Q Consensus 273 ~pdlLa~adl~It~g---G~~-Tv~Eal~~GvP----~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~ 344 (838)
++.+|+.||+||..+ |+| ++.|+++||+| +|+-...+..++ + ...|+.+++.+. +.+.++|.
T Consensus 369 l~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~------l--~~~allVnP~D~--~~lA~AI~ 438 (797)
T PLN03063 369 LCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQS------L--GAGALLVNPWNI--TEVSSAIK 438 (797)
T ss_pred HHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhh------h--cCCeEEECCCCH--HHHHHHHH
Confidence 347889999999754 777 67899999999 444433333333 2 125888988774 68999999
Q ss_pred HHhhCC
Q 003222 345 RAISLK 350 (838)
Q Consensus 345 ~ll~~~ 350 (838)
++|+++
T Consensus 439 ~aL~m~ 444 (797)
T PLN03063 439 EALNMS 444 (797)
T ss_pred HHHhCC
Confidence 999855
No 220
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.89 E-value=25 Score=38.76 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=32.0
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD 55 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~ 55 (838)
+|+||..-.|.|=.+-+.+.|-.|++.|.+|.+++..|.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 455676667799999999999999999988888877653
No 221
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=74.86 E-value=7.7 Score=45.89 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=44.3
Q ss_pred HHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCCC-----ChhhHHHHHH
Q 003222 275 DFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRDL-----LTGHWKPYLE 344 (838)
Q Consensus 275 dlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~-G~g~~l~~~~~-----~~~~l~~~l~ 344 (838)
++++.||+||.-+ | ..++.||+++|+|+|.....++.+= ..+.+... ..|+.+...+. ..+.+.++|.
T Consensus 470 E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~--v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~ 547 (590)
T cd03793 470 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCF--MEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMY 547 (590)
T ss_pred HHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhh--hHHHhccCCCceEEEecCCccchHHHHHHHHHHHH
Confidence 7888999999733 3 3589999999999999987665421 11222222 25777753332 1245555555
Q ss_pred HHh
Q 003222 345 RAI 347 (838)
Q Consensus 345 ~ll 347 (838)
+++
T Consensus 548 ~~~ 550 (590)
T cd03793 548 EFC 550 (590)
T ss_pred HHh
Confidence 555
No 222
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=74.28 E-value=15 Score=40.20 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=66.0
Q ss_pred HhCCCCCCcEEEEEcCCCCc-h-h------hhHHhhCCCCcEEEEe-CCCCC-C--------CCCCeEECCCCCCHH---
Q 003222 216 ELGIEDDVKLLILNFGGQPA-G-W------KLKEEYLPSGWKCLVC-GASDS-Q--------LPPNFIKLPKDAYTP--- 274 (838)
Q Consensus 216 ~l~~~~~~~~Vlvs~Gs~~~-~-~------~ll~~l~~~~~~~vv~-G~~~~-~--------lp~nv~~~~~~~~~p--- 274 (838)
+++...+++.|++..|+... + + ++.+.+...++.++++ |...+ . .+ +..+.+.. .++
T Consensus 172 ~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~-~~~l~g~~-sL~el~ 249 (319)
T TIGR02193 172 FLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALP-GAVVLPKM-SLAEVA 249 (319)
T ss_pred hhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCC-CCeecCCC-CHHHHH
Confidence 33433356777776665433 1 2 2333444446666655 53321 0 23 22334433 344
Q ss_pred HHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE--ecCCCChhhHHHHHHHHh
Q 003222 275 DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM--IRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 275 dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l--~~~~~~~~~l~~~l~~ll 347 (838)
.+++.||+|||.=. +.+.=|.+.|+|+|.+=-+....+.. - .. ....++. ..++++++++.++++++|
T Consensus 250 ali~~a~l~I~~DS-gp~HlAaa~g~P~i~lfg~t~p~~~~--P-~~-~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 250 ALLAGADAVVGVDT-GLTHLAAALDKPTVTLYGATDPGRTG--G-YG-KPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHHcCCEEEeCCC-hHHHHHHHcCCCEEEEECCCCHhhcc--c-CC-CCceEEccCccCCCCHHHHHHHHHhhC
Confidence 67788999999443 67888999999999985221111100 0 00 0111111 245677778777777653
No 223
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=73.70 E-value=16 Score=40.05 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=32.4
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD 55 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~ 55 (838)
|+++|+..-.|.|=.+-+.++|-+++++|++|.+++..|.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 3566666666799999999999999999999999988763
No 224
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=71.93 E-value=37 Score=35.97 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=24.1
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|+||+ +.--| =|..=..+|+++|+ .+++|+++.+.
T Consensus 1 mrILl-TNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~ 35 (252)
T COG0496 1 MRILL-TNDDG-IHAPGIRALARALR-EGADVTVVAPD 35 (252)
T ss_pred CeEEE-ecCCc-cCCHHHHHHHHHHh-hCCCEEEEccC
Confidence 35543 23333 35555778999999 89999999775
No 225
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=71.35 E-value=51 Score=36.51 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=61.1
Q ss_pred CCeEECCCCCCHH-----HHHhhcCEEEe----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecC
Q 003222 262 PNFIKLPKDAYTP-----DFMAASDCMLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRR 332 (838)
Q Consensus 262 ~nv~~~~~~~~~p-----dlLa~adl~It----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~ 332 (838)
+|+.++. +.|| ++|+.||+.|- .-|.|+++=.+.+|+|+++-... .--+.+.+.|+-+....+
T Consensus 245 ~~~~iL~--e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~n------p~~~~l~~~~ipVlf~~d 316 (360)
T PF07429_consen 245 ENFQILT--EFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDN------PFWQDLKEQGIPVLFYGD 316 (360)
T ss_pred cceeEhh--hhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCC------hHHHHHHhCCCeEEeccc
Confidence 5777652 3444 67788999996 35899999999999999986421 234678888999888888
Q ss_pred CCChhhHHHHHHHHhhCC
Q 003222 333 DLLTGHWKPYLERAISLK 350 (838)
Q Consensus 333 ~~~~~~l~~~l~~ll~~~ 350 (838)
+++...+.++=+++....
T Consensus 317 ~L~~~~v~ea~rql~~~d 334 (360)
T PF07429_consen 317 ELDEALVREAQRQLANVD 334 (360)
T ss_pred cCCHHHHHHHHHHHhhCc
Confidence 998888887777666533
No 226
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=70.45 E-value=11 Score=39.93 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=69.9
Q ss_pred EEEEEcCCCCc--h-hhhHHh---hCCC--CcEEEEeCCCCC-------C-----CCCCeEECCCCC--CHHHHHhhcCE
Q 003222 225 LLILNFGGQPA--G-WKLKEE---YLPS--GWKCLVCGASDS-------Q-----LPPNFIKLPKDA--YTPDFMAASDC 282 (838)
Q Consensus 225 ~Vlvs~Gs~~~--~-~~ll~~---l~~~--~~~~vv~G~~~~-------~-----lp~nv~~~~~~~--~~pdlLa~adl 282 (838)
.+++..|.... + ..+++. +... ++.+.++|.... . ...++...++.+ .++.++..+|+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 279 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADV 279 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCE
Confidence 56677776544 1 122222 2221 256677776543 1 236777777665 45577888999
Q ss_pred EEec---CChh-hHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 283 MLGK---IGYG-TVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 283 ~It~---gG~~-Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++.. -|++ ++.||+++|+|+|........ +.+...+.|...... ..+.+..++..++++.
T Consensus 280 ~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~------e~~~~~~~g~~~~~~--~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 280 FVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIP------EVVEDGETGLLVPPG--DVEELADALEQLLEDP 343 (381)
T ss_pred EEeccccccchHHHHHHHhcCCcEEECCCCChH------HHhcCCCceEecCCC--CHHHHHHHHHHHhcCH
Confidence 9975 2443 469999999999997754222 233333345533333 3467778888877543
No 227
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=69.88 E-value=14 Score=42.57 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=56.8
Q ss_pred HHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE-EecCCCChhhHHHHHHHHhhCC
Q 003222 275 DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE-MIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 275 dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~-l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.+++.||++|+ .=+-++.=|+..|+|++.+++ | +.....++..|.... .+.++++.+.+.+.+.+++++.
T Consensus 323 ~iIs~~dl~ig-~RlHa~I~a~~~gvP~i~i~Y----~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 323 KILGACELTVG-TRLHSAIISMNFGTPAIAINY----E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQL 393 (426)
T ss_pred HHHhhCCEEEE-ecchHHHHHHHcCCCEEEeee----h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCH
Confidence 67889999998 444577789999999999983 3 467778888998765 6778888888999999998765
No 228
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=68.73 E-value=0.72 Score=53.16 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=35.5
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
.+..|...+|.+ +++..|. +.|.+++|+|+| |||+|||+.||+.
T Consensus 378 l~~~p~~~~h~~----~~~~~~~-~~gi~~~liRlsvGlEd~~dL~~Dl~~ 423 (431)
T PRK08248 378 LIIHPASTTHQQ----LSEEEQL-AAGVTPGLVRLSVGTEAIDDILDDLRQ 423 (431)
T ss_pred eeeCCCcCcccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 455566666665 7777666 788999999999 9999999999976
No 229
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=68.01 E-value=7.4 Score=43.65 Aligned_cols=97 Identities=18% Similarity=0.311 Sum_probs=50.1
Q ss_pred hHHHHHHhCCCCCCcEEEEEc--CCCCch-----------hhhHHhhCCCCcEEEEeCCC-----CC---CCCCCeEECC
Q 003222 210 RKEVRKELGIEDDVKLLILNF--GGQPAG-----------WKLKEEYLPSGWKCLVCGAS-----DS---QLPPNFIKLP 268 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~--Gs~~~~-----------~~ll~~l~~~~~~~vv~G~~-----~~---~lp~nv~~~~ 268 (838)
.+.+++.++++.++++|+.+- ...... .+-+..+...++.+++--.. .. ....++..+.
T Consensus 179 ~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~ 258 (369)
T PF04464_consen 179 RNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVS 258 (369)
T ss_dssp HHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE--SHHHHTT----TT-TTTEEE-T
T ss_pred HHHHHHHhccCCCCcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEeCchhhhchhhhhccCCcEEECC
Confidence 456788888877777666652 111110 01111334566655543210 00 1246776654
Q ss_pred CCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeC
Q 003222 269 KDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRR 307 (838)
Q Consensus 269 ~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~ 307 (838)
....+.++|..||++||--. +.+.|.+.+++|+|+...
T Consensus 259 ~~~~~~~ll~~aDiLITDyS-Si~fD~~~l~KPiify~~ 296 (369)
T PF04464_consen 259 DNEDIYDLLAAADILITDYS-SIIFDFLLLNKPIIFYQP 296 (369)
T ss_dssp T-S-HHHHHHT-SEEEESS--THHHHHGGGT--EEEE-T
T ss_pred CCCCHHHHHHhcCEEEEech-hHHHHHHHhCCCEEEEec
Confidence 44456799999999999665 678999999999999863
No 230
>PLN02509 cystathionine beta-lyase
Probab=67.22 E-value=0.83 Score=53.03 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=36.0
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
.+..|+..++.+ +++..|. +.|.+++|||++ |||+|||+.||+.
T Consensus 412 Li~~p~~~sh~~----~~~~~~~-~~Gi~~~liRlSvGlE~~~DLi~Dl~~ 457 (464)
T PLN02509 412 LISMPCFMSHAS----IPAEVRE-ARGLTEDLVRISAGIEDVDDLISDLDI 457 (464)
T ss_pred eeeCCccccccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 455566777765 6677776 788899999999 9999999999976
No 231
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=66.43 E-value=0.92 Score=52.08 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=36.4
Q ss_pred CCccccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 401 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
..+.+..|....|.+ +++..++ +.|.+++|+|++ +||+|||+.||+.
T Consensus 367 ~~sl~~~~~~~~h~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 415 (418)
T TIGR01326 367 AKSLVIHPASTTHQQ----LSEEEQL-KAGVTPGLIRLSVGIENIDDIIADLEQ 415 (418)
T ss_pred CCceeeCCCCCCccc----CCHHHHH-hcCCCCCeEEEEecCCCHHHHHHHHHH
Confidence 334455566666665 6666666 788899999999 9999999999864
No 232
>PRK07049 methionine gamma-lyase; Validated
Probab=65.86 E-value=0.97 Score=52.04 Aligned_cols=47 Identities=21% Similarity=0.096 Sum_probs=35.7
Q ss_pred CCccccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 401 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
..+.+..|...++.+ +.+..+. +.|.+++|||+| |||+|||+.||+.
T Consensus 374 ~~sli~~~~~~~h~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 422 (427)
T PRK07049 374 TESLASHPASMTHSG----VPADVRE-RIGVLESTIRLSIGIEHPDDLIADLAQ 422 (427)
T ss_pred CCceeeCCCcccccc----CCHHHHH-hcCCCcCeEEEEeCcCCHHHHHHHHHH
Confidence 344555566666665 6666655 678899999999 9999999999875
No 233
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=65.30 E-value=6.1 Score=46.67 Aligned_cols=76 Identities=8% Similarity=0.010 Sum_probs=55.9
Q ss_pred CCeEECCCCC--CHHHHHhhcCEEEec---CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh
Q 003222 262 PNFIKLPKDA--YTPDFMAASDCMLGK---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336 (838)
Q Consensus 262 ~nv~~~~~~~--~~pdlLa~adl~It~---gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~ 336 (838)
..|.+.++.. ++-..+..+.++|.. .|.+|.+||+.+|+|+| .. +. ...++...-|.++ .+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI--ny-g~------~~~V~d~~NG~li--~d--~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI--NK-VE------TDYVEHNKNGYII--DD--I 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee--ec-CC------ceeeEcCCCcEEe--CC--H
Confidence 5677778776 666888899999964 47889999999999999 21 11 2235555667777 33 3
Q ss_pred hhHHHHHHHHhhCC
Q 003222 337 GHWKPYLERAISLK 350 (838)
Q Consensus 337 ~~l~~~l~~ll~~~ 350 (838)
..+..+|..+|.++
T Consensus 476 ~~l~~al~~~L~~~ 489 (519)
T TIGR03713 476 SELLKALDYYLDNL 489 (519)
T ss_pred HHHHHHHHHHHhCH
Confidence 57888888888765
No 234
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=64.55 E-value=0.94 Score=51.29 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=32.4
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+..|.-.++.+ ++|..++ +.+.+++|||+| +||+|||+.||+.
T Consensus 330 ~~~p~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dli~dl~~ 374 (380)
T PRK06176 330 VGIPAFMTHAC----IPKEQRE-AAGIRDGLVRLSVGIEHEQDLLEDLEQ 374 (380)
T ss_pred eeCCccccccc----CCHHHHH-hcCCCcCeEEEEeccCCHHHHHHHHHH
Confidence 44444445554 5565555 778899999999 9999999999875
No 235
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=63.95 E-value=42 Score=36.60 Aligned_cols=78 Identities=21% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCeEECCCCCCHH-----HHHhhcCEEEe----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecC
Q 003222 262 PNFIKLPKDAYTP-----DFMAASDCMLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRR 332 (838)
Q Consensus 262 ~nv~~~~~~~~~p-----dlLa~adl~It----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~ 332 (838)
+|+.++. +.|| ++|+.||+.|- .-|.||++=.+.+|+|+++-....+. +.+.+.|+-+..+.+
T Consensus 206 ~~~~~L~--e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fw------qdl~e~gv~Vlf~~d 277 (322)
T PRK02797 206 ENFQILT--EKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFW------QDLTEQGLPVLFTGD 277 (322)
T ss_pred ccEEehh--hhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchH------HHHHhCCCeEEecCC
Confidence 7887662 3444 67789999985 35889999999999999996532221 347888999888888
Q ss_pred CCChhhHHHHHHHHh
Q 003222 333 DLLTGHWKPYLERAI 347 (838)
Q Consensus 333 ~~~~~~l~~~l~~ll 347 (838)
.++...+.++=+++.
T Consensus 278 ~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 DLDEDIVREAQRQLA 292 (322)
T ss_pred cccHHHHHHHHHHHH
Confidence 887667766544444
No 236
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=63.12 E-value=2.9 Score=48.25 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=34.3
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
.+..|....|.+ +++..+. +.|.+++|||++ +||+|||+.||+..
T Consensus 382 Li~~p~~~~h~~----~~~~~~~-~~gi~~~liRlSvGlEd~~dli~dl~~A 428 (436)
T PRK07812 382 LVIHPASTTHSQ----LTPEEQL-ATGVTPGLVRLAVGIEGIDDILADLEAG 428 (436)
T ss_pred eeeCCCCCCccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 344455555555 6666665 788899999999 99999999999763
No 237
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=62.19 E-value=87 Score=33.41 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=23.8
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+|+||+ +.--|. |..-..+|+++|.+.| +|+++.+.
T Consensus 5 ~M~ILl-tNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~ 40 (257)
T PRK13932 5 KPHILV-CNDDGI-EGEGIHVLAASMKKIG-RVTVVAPA 40 (257)
T ss_pred CCEEEE-ECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCC
Confidence 467764 444442 2333568899999888 79888664
No 238
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=62.11 E-value=1.1 Score=51.00 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=34.1
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
.+..|....|.+ +++..+. +.+.+++|+|+| |||+|||+.||+.
T Consensus 346 l~~~p~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 391 (398)
T PRK07504 346 LITHPATTTHKN----LSPEARA-ELGISEGFLRLSAGLEDTDDLIEDLAA 391 (398)
T ss_pred eeeCCCCCCccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 445555555555 6666666 788899999999 9999999999976
No 239
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=62.06 E-value=23 Score=37.18 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=22.4
Q ss_pred CcEEE-ECC--CchHHHHHHHhCCcEEEEec
Q 003222 119 ADLVV-SDV--VPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 119 PDlVV-sD~--~~~~~~aA~~lgIP~V~is~ 146 (838)
||+++ +|. .-.++.=|..+|||+|++.|
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVD 187 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEec
Confidence 99888 564 55677778999999999854
No 240
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=62.03 E-value=1.2 Score=50.66 Aligned_cols=45 Identities=18% Similarity=0.049 Sum_probs=34.7
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
.+..|....+.+ +++..|. +.|.+++|+|+| |||+|||+.||+..
T Consensus 344 l~~~~~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~a 390 (398)
T PRK08249 344 IYGPARTTSHVE----NTLEERA-ALGIPEGLVRISVGIEDTEDLIADLEQA 390 (398)
T ss_pred eeeCCccccccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 445555666665 6666666 678899999999 99999999999763
No 241
>PRK06434 cystathionine gamma-lyase; Validated
Probab=61.69 E-value=1.1 Score=50.80 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=33.8
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
.+..|....+.+ +++..+. +.|.+++|||++ |||+|||+.||++
T Consensus 335 l~~~p~~~~h~~----~~~e~~~-~~gi~~~liRlsvGlEd~~dLi~dl~~ 380 (384)
T PRK06434 335 LITLPVETSHSS----LSPEERE-RLGISDNLVRFSIGIEDIDDLIKDIEN 380 (384)
T ss_pred eeECCCcccccc----CCHHHHH-hcCCCcCeEEEEeCcCCHHHHHHHHHH
Confidence 444455555555 6666666 788899999999 9999999999875
No 242
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=60.11 E-value=38 Score=37.34 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCcEEEE-CC--CchHHHHHHHhCCcEEEEec
Q 003222 118 KADLVVS-DV--VPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 118 kPDlVVs-D~--~~~~~~aA~~lgIP~V~is~ 146 (838)
.||+||. |. ...++.=|..+|||+|++.|
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivD 183 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVD 183 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEee
Confidence 6998884 53 56677778899999999843
No 243
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=59.64 E-value=1.4 Score=49.98 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=34.1
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
.+..|...++.+ +++..+. +.|.+++|+|++ +||+|||+.||+..
T Consensus 333 l~~~~~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~a 379 (386)
T PRK08045 333 LISHAATMTHAG----MAPEARA-AAGISETLLRISTGIEDGEDLIADLENG 379 (386)
T ss_pred eEeCCCCccccc----CCHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHHH
Confidence 444455566665 5565555 788899999999 99999999999763
No 244
>PRK07671 cystathionine beta-lyase; Provisional
Probab=59.03 E-value=1.3 Score=50.09 Aligned_cols=44 Identities=30% Similarity=0.249 Sum_probs=33.3
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
.+..|....+.+ +.+..+. +.|.++.+||+| +||+|||+.||+.
T Consensus 329 l~~~~~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 374 (377)
T PRK07671 329 LISIPSQMTHAS----IPADRRK-ELGITDGLIRISVGIEDGEDLIEDLAQ 374 (377)
T ss_pred EeECCCcccccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 444455555554 5565555 778899999999 9999999999864
No 245
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=58.92 E-value=33 Score=34.37 Aligned_cols=35 Identities=20% Similarity=0.503 Sum_probs=23.8
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCe--EE-EEeCCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHD--VH-VVTGAP 54 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~--V~-~v~~~~ 54 (838)
|||+|+.+|.| +....+.++|.+.+++ +. +++..+
T Consensus 1 mrI~~~~Sg~~----~~~~~~l~~l~~~~~~~~iv~Vit~~~ 38 (181)
T PF00551_consen 1 MRIVFFGSGSG----SFLKALLEALKARGHNVEIVLVITNPD 38 (181)
T ss_dssp EEEEEEESSSS----HHHHHHHHHHHTTSSEEEEEEEEESST
T ss_pred CEEEEEEcCCC----HHHHHHHHHHHhCCCCceEEEEecccc
Confidence 57877766554 4466778999999997 43 445433
No 246
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=58.72 E-value=1.1e+02 Score=32.60 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=22.7
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+||+ +.--|. |..-..+|+++|.+. |+|+++.+.
T Consensus 2 ~ILl-TNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~ 35 (250)
T PRK00346 2 RILL-TNDDGI-HAPGIRALAEALREL-ADVTVVAPD 35 (250)
T ss_pred eEEE-ECCCCC-CChhHHHHHHHHHhC-CCEEEEeCC
Confidence 4543 344442 344467899999988 799988764
No 247
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=58.54 E-value=1.6 Score=49.65 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=34.5
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 403 RDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 403 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+-+..|..+.|.+ +++..|. +.|.+++|||++ +||+|||++||+.
T Consensus 340 sl~~~p~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 386 (390)
T PRK08133 340 TTITHPATTTHGR----LSPEARA-AAGITEGLIRVAVGLEDVADIKADLAR 386 (390)
T ss_pred eeeecCCCCCccc----CCHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHH
Confidence 3445566666665 6565555 778899999999 9999999999975
No 248
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=58.53 E-value=4.1 Score=47.12 Aligned_cols=82 Identities=18% Similarity=0.050 Sum_probs=54.0
Q ss_pred HHHhhcCEEEecC-----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 275 DFMAASDCMLGKI-----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 275 dlLa~adl~It~g-----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
.+++.++++...+ | -++.|||++|+|+|++...+-.|- ++..--|..+++.+-....|..++.++.++
T Consensus 361 rl~adt~~v~~qPa~E~FG-iv~IEAMa~glPvvAt~~GGP~Ei------V~~~~tG~l~dp~~e~~~~~a~~~~kl~~~ 433 (495)
T KOG0853|consen 361 RLAADTKGVLYQPANEHFG-IVPIEAMACGLPVVATNNGGPAEI------VVHGVTGLLIDPGQEAVAELADALLKLRRD 433 (495)
T ss_pred HHHHhcceEEecCCCCCcc-ceeHHHHhcCCCEEEecCCCceEE------EEcCCcceeeCCchHHHHHHHHHHHHHhcC
Confidence 3445566665433 3 489999999999999986554443 555566888887332233688999999888
Q ss_pred CCCc-cCCCCHHHHH
Q 003222 350 KPCY-EGGINGGEVA 363 (838)
Q Consensus 350 ~~~~-~~~~~g~~~~ 363 (838)
+... +...+|.+++
T Consensus 434 p~l~~~~~~~G~~rV 448 (495)
T KOG0853|consen 434 PELWARMGKNGLKRV 448 (495)
T ss_pred HHHHHHHHHHHHHHH
Confidence 7432 2445555444
No 249
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=58.43 E-value=1.4 Score=50.96 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=26.8
Q ss_pred cccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 420 LSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+++..|. +.|.+++|||+| +||+|||+.||+.
T Consensus 399 ~~~~~~~-~~Gi~~~liRlsvGlE~~~dLi~Dl~~ 432 (437)
T PRK05613 399 SDEAGLA-RAGITQATVRLSVGIEDIDDIIADLEG 432 (437)
T ss_pred CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 5555555 678899999999 9999999999975
No 250
>PRK06767 methionine gamma-lyase; Provisional
Probab=58.31 E-value=1.9 Score=48.99 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=32.7
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
.+..|....+.. +++..+. +.+.++.++|+| |||+|||+.||+.
T Consensus 336 l~~~p~~~~~~~----~~~~~~~-~~gi~~~l~R~svGlE~~~dl~~dl~~ 381 (386)
T PRK06767 336 LIQHPATMTHAA----IPAELRQ-EMGIYDNLIRLSVGLESWEDIVSDLEQ 381 (386)
T ss_pred cccCCCcccccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 344455555554 5565555 678899999999 9999999999975
No 251
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=56.73 E-value=1.7 Score=50.09 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=33.7
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
.+..|....+.+ +++..+. +.|.+++++|++ |||+|||+.||+.
T Consensus 373 lv~~p~~~~h~~----~~~~~~~-~~gi~~~liR~svGlEd~~dLi~dl~~ 418 (425)
T PRK06084 373 LACHPASTTHRQ----LNDEELE-KAGVSRDMVRLSIGIEHIDDIIADLAQ 418 (425)
T ss_pred eeeCCCcCCccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 344455566665 5555555 788899999999 9999999999975
No 252
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=56.41 E-value=1.7 Score=49.41 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=27.4
Q ss_pred cccCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 003222 420 LSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
+++..+. +.|.+++|||+| +||+|||+.||+..
T Consensus 346 ~~~~~~~-~~gi~~~liRlsvGlE~~~dli~Dl~~a 380 (388)
T PRK08861 346 MGEEALA-EAGVSQQLLRLSVGLEDAQDLIADLDQA 380 (388)
T ss_pred cCHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHHH
Confidence 5555555 678899999999 99999999999763
No 253
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.99 E-value=1.6 Score=50.34 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=32.9
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
+..|....|.+ +++..+. +.|.+++|||++ +||+|||+.||++.
T Consensus 379 ~~~p~~~~h~~----~~~~~~~-~~Gi~~~liRlsvGlE~~~dli~dl~~A 424 (433)
T PRK08134 379 VIHPASTTHFR----MDAAALA-AAGIGEGTIRLSIGLEDADDLIDDLKRA 424 (433)
T ss_pred eeCCCccCccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 34444555554 5555555 788899999999 99999999999763
No 254
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=55.53 E-value=38 Score=29.30 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=35.8
Q ss_pred ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 288 G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
-..-+.|++++|+|+|.-+. ......+...--++.++ +.+.|.++|..+++++
T Consensus 11 ~~~r~~E~~a~G~~vi~~~~------~~~~~~~~~~~~~~~~~----~~~el~~~i~~ll~~~ 63 (92)
T PF13524_consen 11 PNMRIFEAMACGTPVISDDS------PGLREIFEDGEHIITYN----DPEELAEKIEYLLENP 63 (92)
T ss_pred CchHHHHHHHCCCeEEECCh------HHHHHHcCCCCeEEEEC----CHHHHHHHHHHHHCCH
Confidence 33479999999999999652 23333333322454444 4578899999999876
No 255
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=54.77 E-value=1.9 Score=49.69 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=31.0
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+..|....+.+ +++..|. ..|.++++||++ +||+|||+.||+.
T Consensus 378 ~~~p~~~~h~~----~~~~~~~-~~gi~~~liRlsvGlE~~~dli~dl~~ 422 (427)
T PRK05994 378 VIHPASTTHRQ----LTDEQKV-AAGAGPDVVRLSIGIEDVDDIIADLEQ 422 (427)
T ss_pred eeCCCCCCccc----CCHHHHH-hcCCCCCcEEEEeccCCHHHHHHHHHH
Confidence 33344444444 4444444 678889999999 9999999999975
No 256
>PRK06460 hypothetical protein; Provisional
Probab=54.28 E-value=1.8 Score=49.01 Aligned_cols=43 Identities=28% Similarity=0.233 Sum_probs=31.4
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+..|..+.+.. +.+..+. +.+.++.++|+| +||+|||+.||+.
T Consensus 326 ~~~p~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 370 (376)
T PRK06460 326 ISHPATMSHRT----LSLEERK-IVGITDSLLRLSVGIEDVNDLIEDLDR 370 (376)
T ss_pred EeCcccccccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 33444555444 5555554 667899999999 9999999999876
No 257
>PRK05939 hypothetical protein; Provisional
Probab=54.15 E-value=2 Score=48.98 Aligned_cols=43 Identities=26% Similarity=0.130 Sum_probs=32.3
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+.-|....|.+ +++..++ +.+.+++|+|++ +||+|||+.||+.
T Consensus 348 ~~~p~~~~~~~----~~~~~~~-~~gi~~~lvR~svGlEd~~dLi~dl~~ 392 (397)
T PRK05939 348 VIPVAPTIYYE----MGAERRA-SMGIADSLIRVSVGIEDEADLIADFEQ 392 (397)
T ss_pred eecCccccccc----CCHHHHH-hcCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 33344555554 5565555 678899999999 9999999999875
No 258
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=53.76 E-value=2.1 Score=48.46 Aligned_cols=43 Identities=26% Similarity=0.272 Sum_probs=32.3
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+..|...++.. +++..++ +.|.+++++|++ +||+|||+.||+.
T Consensus 327 ~~~p~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 371 (378)
T TIGR01329 327 ISMPCFMSHAS----IPAEVRE-ERGLPEDLVRLSVGIEDVDDLISDLDI 371 (378)
T ss_pred eeCCCcccccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 34444555554 5555555 778899999999 9999999999875
No 259
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=53.66 E-value=2.1e+02 Score=30.41 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=21.7
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+||+ +..-|. |..-..+|+++|++ +|+|+++.+.
T Consensus 2 ~ILv-tNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~ 35 (253)
T PRK13933 2 NILL-TNDDGI-NAEGINTLAELLSK-YHEVIIVAPE 35 (253)
T ss_pred eEEE-EcCCCC-CChhHHHHHHHHHh-CCcEEEEccC
Confidence 4543 444443 23336788999976 6799998664
No 260
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=53.09 E-value=3.2 Score=46.67 Aligned_cols=47 Identities=21% Similarity=0.073 Sum_probs=36.6
Q ss_pred CCCccccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 400 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
...+.++.|+.+.|++ ++..|. +.+..++|+|.| |||.|||+.|++.
T Consensus 354 ~~eSL~~~p~~mth~~-----~~e~~~-~~Gi~~~LVRvSVGiEd~~dL~~d~~~ 402 (409)
T KOG0053|consen 354 GNESLAEPPAIMTHAS-----ELEERE-KFGIDPNLVRVSVGIEDIEDLIKDFQQ 402 (409)
T ss_pred ccchhhcchhhhccCC-----CHHHHH-hcCCCCCcEEEEeccCCHHHHHHHHHH
Confidence 4445678788888875 234444 788899999999 9999999999875
No 261
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=53.04 E-value=2.6 Score=47.92 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=26.1
Q ss_pred cccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 420 LSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+.+..+. +.+.+++|+|+| +||+|||+.||+.
T Consensus 353 ~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 386 (391)
T TIGR01328 353 VPKEERE-AAGITDGMIRLSVGLEDADDLIADLKQ 386 (391)
T ss_pred CCHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHH
Confidence 4455554 677789999999 9999999999975
No 262
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=51.97 E-value=33 Score=39.67 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=53.4
Q ss_pred CCeEEC-CCCC-CHHHHHhhcCEEEe----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCC
Q 003222 262 PNFIKL-PKDA-YTPDFMAASDCMLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLL 335 (838)
Q Consensus 262 ~nv~~~-~~~~-~~pdlLa~adl~It----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~ 335 (838)
+|++.+ ++.. .+.+++..||+.+. .+-.+++.||+.+|+|++.........+ .... |-++...+
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~-----~i~~---g~l~~~~~-- 397 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRD-----FIAS---ENIFEHNE-- 397 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcc-----cccC---CceecCCC--
Confidence 666655 4444 55688999999984 3445689999999999999875433221 1222 44455555
Q ss_pred hhhHHHHHHHHhhCC
Q 003222 336 TGHWKPYLERAISLK 350 (838)
Q Consensus 336 ~~~l~~~l~~ll~~~ 350 (838)
.+.+.++|.++|.++
T Consensus 398 ~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 398 VDQLISKLKDLLNDP 412 (438)
T ss_pred HHHHHHHHHHHhcCH
Confidence 467788888888765
No 263
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=50.83 E-value=2.1 Score=49.00 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=31.9
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
+.-|....|.+ +.+..|. +.|.+++|||++ |||.|||+.||+..
T Consensus 342 ~~~p~~~~h~~----~~~~~~~-~~gi~~~liR~svGlE~~~dli~dl~~a 387 (405)
T PRK08776 342 IAHPASMTHAA----MTAEARA-AAGISDGLLRLSVGIESAEDLLIDLRAG 387 (405)
T ss_pred EECCccccccc----CCHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHHH
Confidence 33344445554 5555555 667899999999 99999999999874
No 264
>PRK07503 methionine gamma-lyase; Provisional
Probab=50.63 E-value=3 Score=47.63 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=27.4
Q ss_pred cccCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 003222 420 LSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
+++..+. +.|.+++|||++ +||+|||+.||+..
T Consensus 359 ~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~A 393 (403)
T PRK07503 359 YTPEERA-EHGISEGLVRLSVGLEDVADILADLAQA 393 (403)
T ss_pred CCHHHHH-hcCCCCCeEEEEEecCCHHHHHHHHHHH
Confidence 5555555 778899999999 99999999999763
No 265
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=50.01 E-value=2.5 Score=47.89 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=31.5
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+..|....+.+ +++..++ +.|.++.+||+| +||+|||+.||+.
T Consensus 333 ~~~p~~~~~~~----~~~~~~~-~~gi~~~liRlsvGlE~~~dl~~dl~~ 377 (382)
T TIGR02080 333 IAHPATMTHAA----MGPEARA-EAGISDTLLRLSVGLEDADDLIADLEQ 377 (382)
T ss_pred eECCCccCccc----CCHHHHH-hcCCCcCeEEEEeccCCHHHHHHHHHH
Confidence 33344555554 5555555 677889999999 9999999999875
No 266
>PRK06234 methionine gamma-lyase; Provisional
Probab=49.98 E-value=2.8 Score=47.81 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=32.6
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
+..|....+.+ +.+..+. +.|.+++|+|+| +||+|||+.||+..
T Consensus 349 ~~~p~~~~~~~----~~~~~~~-~~gi~~~l~R~svGlE~~~dl~~dl~~a 394 (400)
T PRK06234 349 IQHPASMTHSP----YTAEERK-EAGISDGLVRLSVGLEDVDDIIADLKQA 394 (400)
T ss_pred ecCCccCCCCC----CCHHHHH-hcCCCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 34455555554 5555555 678899999999 99999999999763
No 267
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=49.71 E-value=3.1 Score=47.02 Aligned_cols=44 Identities=27% Similarity=0.226 Sum_probs=35.8
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
.++.|.-+.|.. +.+..|+ +.|....|+|++ |||.|||+.||+.
T Consensus 345 Li~~pa~~th~~----~~~~~r~-~~Gi~~~LvRlSVGlEd~eDLi~Dl~~ 390 (396)
T COG0626 345 LISHPATMTHAS----IPLEERA-KAGITDGLVRLSVGLEDVEDLIADLEQ 390 (396)
T ss_pred ccccccccCccc----CCHhHHH-hcCCCCCeEEEEecCCCHHHHHHHHHH
Confidence 455555556665 7777777 899999999999 9999999999875
No 268
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=49.41 E-value=95 Score=30.36 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=31.4
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|.+...-.|.|=.+-+..||..|++.|++|.++-..
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 556777888999999999999999999999998654
No 269
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=48.89 E-value=2.8 Score=48.19 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=29.6
Q ss_pred cccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 408 PEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 408 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
|....|.+ +++..|. +.+.+.+++|++ |||+|||+.||+.
T Consensus 379 p~~~th~~----~~~~~~~-~~Gi~~~liRlSvGlEd~eDLi~Dl~~ 420 (432)
T PRK06702 379 PASTTHRQ----LSAEDQR-LAGVTSDLIRLSVGIEDVSDIIADLEA 420 (432)
T ss_pred CCCCCccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 44444444 4444444 567788999999 9999999999975
No 270
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=48.00 E-value=1.4 Score=49.88 Aligned_cols=44 Identities=25% Similarity=0.199 Sum_probs=29.3
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
.+..|....+.+ +++..|. +.+.+++++|+| +||+|||++||+.
T Consensus 338 Li~~p~~~~h~~----~~~e~~~-~~Gi~~~liRlSvGlEd~~dLi~Dl~~ 383 (386)
T PF01053_consen 338 LISHPASTSHRS----LSPEERA-EAGISDGLIRLSVGLEDPDDLIADLEQ 383 (386)
T ss_dssp EEEETTCTTTTT----SCHHHHH-HTTS-TTEEEEE--SS-HHHHHHHHHH
T ss_pred ccccccchhhcc----CChhhhh-ccCCCCCeeEEEeccCCHHHHHHHHHH
Confidence 334444444444 4444455 678899999999 9999999999863
No 271
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=45.66 E-value=2.9 Score=47.30 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=29.7
Q ss_pred cccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 408 PEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 408 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
|..+.|.+ +++..+. +.|.+++|+|++ |||+|||+.||+.
T Consensus 337 p~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 378 (380)
T TIGR01325 337 PATTTHGR----MQPEERA-AAGIGDGLVRLSVGLEDVDDLIADLKR 378 (380)
T ss_pred CCccCccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHh
Confidence 44444444 5555554 677789999999 9999999999864
No 272
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=44.97 E-value=2.2e+02 Score=30.21 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=22.1
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+||+ +.--|. |..-..+|+++|.+.| +|+++.+.
T Consensus 2 ~ILl-tNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~ 35 (244)
T TIGR00087 2 KILL-TNDDGI-HSPGIRALYQALKELG-EVTVVAPA 35 (244)
T ss_pred eEEE-ECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCC
Confidence 4543 344441 3333668999999988 89888664
No 273
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=44.52 E-value=3.3 Score=47.02 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=31.6
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 405 VSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 405 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+..|....+.+ +++..+. +.|.+++|+|++ +||+|||+.||+.
T Consensus 336 ~~~~~~~~~~~----~~~~~~~-~~gi~~~liR~svGlE~~~dli~dl~~ 380 (385)
T PRK08574 336 ATYPVKSAASP----IPEEDRK-ALGITEDLVRLSVGLEDVEDLIEDLDQ 380 (385)
T ss_pred eeCCCcCCccc----CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 33344445544 5555555 678899999999 9999999999875
No 274
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=43.79 E-value=2.5e+02 Score=28.51 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=27.0
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
.+|.|.|=.+.++.+|-....+|++|.++..
T Consensus 28 ~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 28 HTGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred ECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4799999999999999999999999988754
No 275
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=41.69 E-value=3.7e+02 Score=28.69 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=21.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+||+ +.--|. |..-..+|+++|++ +|+|+++.+.
T Consensus 2 ~ILl-TNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~ 35 (253)
T PRK13935 2 NILV-TNDDGI-TSPGIIILAEYLSE-KHEVFVVAPD 35 (253)
T ss_pred eEEE-ECCCCC-CCHHHHHHHHHHHh-CCcEEEEccC
Confidence 4543 344442 33446788999975 5799988664
No 276
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=41.53 E-value=1e+02 Score=31.24 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 28 GHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 28 GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
-++.++..+...+..+|-+|.|++..+
T Consensus 40 ~~L~~A~~~i~~i~~~~g~iLfV~t~~ 66 (193)
T cd01425 40 EKLRLALNFIANIAAKGGKILFVGTKP 66 (193)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 456777778888888899999998764
No 277
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=40.91 E-value=3.5e+02 Score=29.07 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=22.1
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+||+ +.--|. |..=..+|+++|.+.| +|+++.+.
T Consensus 2 ~ILl-TNDDGi-~apGi~aL~~al~~~g-~V~VvAP~ 35 (266)
T PRK13934 2 KILV-TNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPE 35 (266)
T ss_pred eEEE-EcCCCC-CCHHHHHHHHHHHhCC-cEEEEccC
Confidence 4543 344442 3444678999998887 79888664
No 278
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=40.06 E-value=3.2e+02 Score=26.88 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=25.6
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEe
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVT 51 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~ 51 (838)
.+|.|.|=.+.++.+|-....+|++|.|+.
T Consensus 8 y~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 8 YTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 368899999999999888888999998864
No 279
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=39.39 E-value=1e+02 Score=33.80 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=29.0
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~ 53 (838)
+||+.- -.+.|-+.-+.++.+.|++. +.+|++++..
T Consensus 2 ~ILii~-~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 2 RVLIVK-TSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred eEEEEe-ccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 565544 45799999999999999997 7889998864
No 280
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=39.37 E-value=91 Score=35.19 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=56.9
Q ss_pred CCeEECCCCCCHH---HHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcE-EEEecCCCChh
Q 003222 262 PNFIKLPKDAYTP---DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGG-VEMIRRDLLTG 337 (838)
Q Consensus 262 ~nv~~~~~~~~~p---dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g-~~l~~~~~~~~ 337 (838)
.|+++..- .|.- ..+++||++|+ .=+-++.=|++.|+|+|.+.+. +.+...+++.|.- ..++..+++.+
T Consensus 266 ~~i~~~~d-~~~~~~~~~l~~~dl~Vg-~R~HsaI~al~~g~p~i~i~Y~-----~K~~~l~~~~gl~~~~~~i~~~~~~ 338 (385)
T COG2327 266 AEILVSSD-EYAEELGGILAACDLIVG-MRLHSAIMALAFGVPAIAIAYD-----PKVRGLMQDLGLPGFAIDIDPLDAE 338 (385)
T ss_pred cceEeecc-hHHHHHHHHhccCceEEe-ehhHHHHHHHhcCCCeEEEeec-----HHHHHHHHHcCCCcccccCCCCchH
Confidence 56665432 2311 46688999998 5667888899999999999732 5666777888874 44556677777
Q ss_pred hHHHHHHHHhhCC
Q 003222 338 HWKPYLERAISLK 350 (838)
Q Consensus 338 ~l~~~l~~ll~~~ 350 (838)
.+...+.+.+.+.
T Consensus 339 ~l~~~~~e~~~~~ 351 (385)
T COG2327 339 ILSAVVLERLTKL 351 (385)
T ss_pred HHHHHHHHHHhcc
Confidence 7777776666543
No 281
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=38.94 E-value=63 Score=30.64 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHhhcCEEEe-cCChhhHHHHH---H------cCC-cEEEEeCCCCCChHHH-HHHHHHcCc
Q 003222 276 FMAASDCMLG-KIGYGTVSEAL---A------YKL-PFVFVRRDYFNEEPFL-RNMLEFYQG 325 (838)
Q Consensus 276 lLa~adl~It-~gG~~Tv~Eal---~------~Gv-P~l~iP~~~~~EQ~~N-a~~l~~~G~ 325 (838)
++..+|+||. -||.||..|.. . +.+ |++++....|.+.... .+.+.+.|.
T Consensus 50 m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~ 111 (133)
T PF03641_consen 50 MIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGF 111 (133)
T ss_dssp HHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTS
T ss_pred HHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCC
Confidence 4467999986 56777866654 3 345 9999987656655322 234455554
No 282
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=38.80 E-value=4.6 Score=46.11 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=25.7
Q ss_pred cccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 420 LSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+++..+. +.+.+++++|+| +||+|||+.||+.
T Consensus 367 ~~~~~~~-~~gi~~~lvR~svGlE~~~dli~dl~~ 400 (403)
T PRK07810 367 MGPEGRA-AIGLGDGVVRLSVGLEDTDDLIADLDR 400 (403)
T ss_pred CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 4444444 677789999999 9999999999864
No 283
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=38.73 E-value=26 Score=43.29 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=46.5
Q ss_pred CHHHHHhhcCEEEec---CChh-hHHHHHHcCCc---EEEEe-CCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 272 YTPDFMAASDCMLGK---IGYG-TVSEALAYKLP---FVFVR-RDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 ~~pdlLa~adl~It~---gG~~-Tv~Eal~~GvP---~l~iP-~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++.+|+.||+|+.. -|+| ++.|++++|+| ++++. ..+..++ + ..|+.+++.+ ++.+.++|
T Consensus 354 ~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~------l---~~~llv~P~d--~~~la~ai 422 (726)
T PRK14501 354 ELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAE------L---AEALLVNPND--IEGIAAAI 422 (726)
T ss_pred HHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHH------h---CcCeEECCCC--HHHHHHHH
Confidence 456889999999964 3655 78899999775 33333 2222222 2 2378888877 46899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++++++
T Consensus 423 ~~~l~~~ 429 (726)
T PRK14501 423 KRALEMP 429 (726)
T ss_pred HHHHcCC
Confidence 9998765
No 284
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=38.35 E-value=2.3e+02 Score=28.74 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=28.6
Q ss_pred EeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 20 YYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 20 ~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
.++-..|.|=.+.+..||..+..+|..|.++|...
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred EEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 45677889999999999999999999999998753
No 285
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=37.79 E-value=60 Score=32.77 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=41.0
Q ss_pred cCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCcc--cccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHH
Q 003222 23 TGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDFV--FTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSET 98 (838)
Q Consensus 23 ~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~~~--~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~ 98 (838)
+....|=+..+..|+++|.++ ++.|.+-+..+... ...... +.+.+.. +..|..
T Consensus 27 Ha~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~-~~v~~~~------------~P~D~~--------- 84 (186)
T PF04413_consen 27 HAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP-DRVDVQY------------LPLDFP--------- 84 (186)
T ss_dssp E-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G-GG-SEEE---------------SSH---------
T ss_pred EECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC-CCeEEEE------------eCccCH---------
Confidence 466789999999999999997 77776665533211 111110 0000000 111111
Q ss_pred hhccHHHHHHHHHHHHhcCCCcEEEE-CCCchHH--HHHHHhCCcEEEE
Q 003222 99 AVAPRKSILKDEVEWLNSIKADLVVS-DVVPVAC--RAAADAGIRSVCV 144 (838)
Q Consensus 99 ~~~~~~~~l~~~~~~L~~~kPDlVVs-D~~~~~~--~aA~~lgIP~V~i 144 (838)
.....+|+.++||++|. ....|.- ..++..|||++.+
T Consensus 85 ---------~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 85 ---------WAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp ---------HHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEE
T ss_pred ---------HHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 11144578999999884 4555543 3456779999988
No 286
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=37.79 E-value=3.2e+02 Score=27.27 Aligned_cols=31 Identities=3% Similarity=-0.162 Sum_probs=21.5
Q ss_pred cCCCcEEEECCCch-HHHHHHHh-CCcEEEEec
Q 003222 116 SIKADLVVSDVVPV-ACRAAADA-GIRSVCVTN 146 (838)
Q Consensus 116 ~~kPDlVVsD~~~~-~~~aA~~l-gIP~V~is~ 146 (838)
.+.||+|+.+.-+- ++.+-... ++|.+++.-
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 47899999998543 34444444 899988743
No 287
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=37.60 E-value=4.3 Score=45.67 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=26.1
Q ss_pred cccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 420 LSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+++..|. ..+.+++|+|++ +||+|||+.||+.
T Consensus 327 ~~~~~r~-~~Gi~~~liRlsvGlE~~~dli~dl~~ 360 (364)
T PRK07269 327 IPAEVRH-SYGLTDDLLRLSIGIEDARDLIADLKQ 360 (364)
T ss_pred CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 4455555 677889999999 9999999999875
No 288
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=37.15 E-value=65 Score=32.36 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=32.1
Q ss_pred HHhhcCEEEec-CChhhHHHHHH---------cCCcEEEEeCCCCCChHHH-HHHHHHcCc
Q 003222 276 FMAASDCMLGK-IGYGTVSEALA---------YKLPFVFVRRDYFNEEPFL-RNMLEFYQG 325 (838)
Q Consensus 276 lLa~adl~It~-gG~~Tv~Eal~---------~GvP~l~iP~~~~~EQ~~N-a~~l~~~G~ 325 (838)
++..+|+||.- ||.||+-|.+. +++|++++....+.+.... .+.+.+.|.
T Consensus 93 m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 93 MAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred HHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 44569999985 66778766532 4999999976556554221 234555554
No 289
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=35.05 E-value=1.8e+02 Score=31.14 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=22.5
Q ss_pred CCcEEEE-CC--CchHHHHHHHhCCcEEEEec
Q 003222 118 KADLVVS-DV--VPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 118 kPDlVVs-D~--~~~~~~aA~~lgIP~V~is~ 146 (838)
.||+||. |. ...++.=|..+|||+|++.|
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivD 188 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVD 188 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEee
Confidence 6999884 53 55667778899999999854
No 290
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=34.90 E-value=53 Score=30.85 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=26.4
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
+|++.++|. ++...+..+.++|.++|++|.++-.
T Consensus 2 ~i~l~vtGs--~~~~~~~~~l~~L~~~g~~v~vv~S 35 (129)
T PF02441_consen 2 RILLGVTGS--IAAYKAPDLLRRLKRAGWEVRVVLS 35 (129)
T ss_dssp EEEEEE-SS--GGGGGHHHHHHHHHTTTSEEEEEES
T ss_pred EEEEEEECH--HHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 566667654 6666699999999999999987754
No 291
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=34.88 E-value=60 Score=31.93 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHH-hhcCEEEecC-Chhh---HHHHHHcCCcEEEEeCCCCCCh
Q 003222 275 DFM-AASDCMLGKI-GYGT---VSEALAYKLPFVFVRRDYFNEE 313 (838)
Q Consensus 275 dlL-a~adl~It~g-G~~T---v~Eal~~GvP~l~iP~~~~~EQ 313 (838)
.+| ..+|+||.-+ |.|| +.|++.+++|+++++...+.+-
T Consensus 86 ~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g~~~~ 129 (159)
T TIGR00725 86 FILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTGGWTD 129 (159)
T ss_pred HHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCCcchH
Confidence 455 4599999754 4454 5578999999999997665543
No 292
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=34.30 E-value=5.7 Score=44.67 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=26.1
Q ss_pred cccCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 003222 420 LSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+++..|. ..|.++.++|++ +||++||+.||+.
T Consensus 327 ~~~~~r~-~~gi~~~~~R~svGlE~~~dl~~dl~~ 360 (366)
T PRK08247 327 IPEEIRI-ANGVCNRLLRFSVGIENVEDLIADLKQ 360 (366)
T ss_pred CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 4455555 567889999999 9999999999876
No 293
>PLN02242 methionine gamma-lyase
Probab=32.99 E-value=6.1 Score=45.36 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=32.5
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCccccc--ccc-ceeccCCCCCC
Q 003222 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TED-FEILHGDCQGL 453 (838)
Q Consensus 404 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 453 (838)
.+..|...++.+ +++..++ +.|.+++|+|++ +|| .|||+.||+..
T Consensus 365 l~~~p~~~~~~~----~~~~~~~-~~gi~~~liRlsvGlE~~~~dli~dl~~a 412 (418)
T PLN02242 365 LMSCSGSSTSSE----LDPEEKA-AAGISPGLVRMSVGYTGTLEQRWSQFEKA 412 (418)
T ss_pred eeeCCCcccccc----CCHHHHH-hcCCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 334344445554 5565555 678889999999 995 99999999864
No 294
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=32.68 E-value=94 Score=36.46 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=48.7
Q ss_pred HHHhhcCEEEec---CChhh-HHHHHHcCC----cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 275 DFMAASDCMLGK---IGYGT-VSEALAYKL----PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 275 dlLa~adl~It~---gG~~T-v~Eal~~Gv----P~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
.+++.||+++.. -|+|. ..|.++++. |+|+-...+..+ ...-++.+++.|. +.+.++|.++
T Consensus 377 alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~---------~l~~AllVNP~d~--~~~A~ai~~A 445 (487)
T TIGR02398 377 AWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAV---------ELKGALLTNPYDP--VRMDETIYVA 445 (487)
T ss_pred HHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchh---------hcCCCEEECCCCH--HHHHHHHHHH
Confidence 677889999964 49885 559999988 666655443332 2345889998875 6889999999
Q ss_pred hhCC
Q 003222 347 ISLK 350 (838)
Q Consensus 347 l~~~ 350 (838)
|+++
T Consensus 446 L~m~ 449 (487)
T TIGR02398 446 LAMP 449 (487)
T ss_pred HcCC
Confidence 9876
No 295
>CHL00067 rps2 ribosomal protein S2
Probab=31.60 E-value=2.2e+02 Score=29.85 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCcEEEE-CC--CchHHHHHHHhCCcEEEEec
Q 003222 118 KADLVVS-DV--VPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 118 kPDlVVs-D~--~~~~~~aA~~lgIP~V~is~ 146 (838)
.||+||. |. ...+..=|..+|||+|++.|
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivD 192 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILD 192 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEe
Confidence 6998884 44 44666678889999999854
No 296
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.44 E-value=67 Score=36.06 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=32.4
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
.+..++.-.|.|-.+.|..+|..++++|+.+.++|...
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT 139 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT 139 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc
Confidence 34455777888999999999999999999999999863
No 297
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=31.11 E-value=4.4e+02 Score=28.18 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=21.4
Q ss_pred HhcCCCcEEEECC----------CchH----HHHHHHhCCcEEEEec
Q 003222 114 LNSIKADLVVSDV----------VPVA----CRAAADAGIRSVCVTN 146 (838)
Q Consensus 114 L~~~kPDlVVsD~----------~~~~----~~aA~~lgIP~V~is~ 146 (838)
+...+||+|||-. .+.| .+-|...|||.|++|-
T Consensus 83 ~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 83 MKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred cCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 4336899999732 2223 3334567999999974
No 298
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=30.52 E-value=1.5e+02 Score=31.55 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=32.7
Q ss_pred CceEEEEEeecCC-CcccHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 003222 13 SKHLVFAYYVTGH-GFGHATRVVEVVRNLISAGHDVHVVTGAPD 55 (838)
Q Consensus 13 m~~~~Il~~v~g~-G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~ 55 (838)
.++-+| ++.|- |.|-.+.+..||-.|.+-++.|.+++..|.
T Consensus 17 ~slKwi--fVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPA 58 (323)
T KOG2825|consen 17 TSLKWI--FVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPA 58 (323)
T ss_pred ceeeEE--EEcCcCCcCccchhhHHHHHHhccCCceEEeecCcc
Confidence 444445 45555 499999999999999999999999988764
No 299
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=30.17 E-value=7.1 Score=43.91 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCCCCCCccccc--cccceeccCCCCC
Q 003222 428 CTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 428 ~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
..+.+++|+|++ +||+|||+.||+.
T Consensus 340 ~~g~~~~liR~svGlE~~~dl~~dl~~ 366 (369)
T cd00614 340 AAGITPGLVRLSVGIEDVEDLIADLEQ 366 (369)
T ss_pred hcCCCCCeEEEEeCcCCHHHHHHHHHH
Confidence 457788999999 9999999999875
No 300
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=30.11 E-value=74 Score=37.50 Aligned_cols=92 Identities=14% Similarity=0.062 Sum_probs=55.3
Q ss_pred CCCCeEECCCCC--CHHHHHhhcCEEEecCCh---hhHHHHHHcCCcEEEEeCC---------CCCChHHHH------HH
Q 003222 260 LPPNFIKLPKDA--YTPDFMAASDCMLGKIGY---GTVSEALAYKLPFVFVRRD---------YFNEEPFLR------NM 319 (838)
Q Consensus 260 lp~nv~~~~~~~--~~pdlLa~adl~It~gG~---~Tv~Eal~~GvP~l~iP~~---------~~~EQ~~Na------~~ 319 (838)
+|.-|.-.|... .+-.+|..+++||+-|.- -+-.||+++|+|.|---.. .|.+.+... ..
T Consensus 320 ~P~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY 399 (559)
T PF15024_consen 320 VPSFVKNHGILSGDEFQQLLRKAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPY 399 (559)
T ss_pred cchhhhhcCcCCHHHHHHHHHhhhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChH
Confidence 565554444332 334888999999996643 3899999999999873211 011111111 13
Q ss_pred HH-HcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 320 LE-FYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 320 l~-~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
++ .-|---+.+.+.-..+.+.++|++++.++.
T Consensus 400 ~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~v 432 (559)
T PF15024_consen 400 AEEFIGEPHVYTVDINNSTEVEAAVKAILATPV 432 (559)
T ss_pred HHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcCC
Confidence 44 345444444333335688999999998763
No 301
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=30.06 E-value=69 Score=29.22 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.1
Q ss_pred HHHhhcCEEEe---c--CChhhHHH---HHHcCCcEEEEeCC
Q 003222 275 DFMAASDCMLG---K--IGYGTVSE---ALAYKLPFVFVRRD 308 (838)
Q Consensus 275 dlLa~adl~It---~--gG~~Tv~E---al~~GvP~l~iP~~ 308 (838)
+.|..||++|. . .+.||.+| |.+.|+|++++-..
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 56678999995 2 57899999 56789999999854
No 302
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.41 E-value=1.1e+02 Score=34.02 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCcEEEECCCc--------hHHH---HHHHhCCcEEEE
Q 003222 106 ILKDEVEWLNSIKADLVVSDVVP--------VACR---AAADAGIRSVCV 144 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~~~--------~~~~---aA~~lgIP~V~i 144 (838)
.+.+..+++++.+||++|.-..| |+.+ +.+.++||+|+-
T Consensus 68 a~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 44556788999999999976422 2222 335689999874
No 303
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=29.38 E-value=94 Score=26.57 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=25.4
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEE
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v 50 (838)
+++++.|.| .|..|...+|+.|.++|..|...
T Consensus 18 ~v~i~HG~~-eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 18 VVVIVHGFG-EHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEeCCcH-HHHHHHHHHHHHHHhCCCEEEEE
Confidence 334555554 79999999999999999988765
No 304
>PRK08114 cystathionine beta-lyase; Provisional
Probab=29.02 E-value=10 Score=43.09 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.8
Q ss_pred CCCCCCCccccc--cccceeccCCCCC
Q 003222 428 CTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 428 ~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+++.+.++||+| |||+|||+.||+.
T Consensus 363 ~~~~~~~liRlSvGlEd~~DLi~Dl~~ 389 (395)
T PRK08114 363 EVDFTGTLIRLHIGLEDVDDLIADLAA 389 (395)
T ss_pred HhcCCCCeEEEEeccCCHHHHHHHHHH
Confidence 456677999999 9999999999975
No 305
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=28.77 E-value=4.2e+02 Score=26.71 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=47.7
Q ss_pred EeecCCC-cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHH
Q 003222 20 YYVTGHG-FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSET 98 (838)
Q Consensus 20 ~~v~g~G-~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~ 98 (838)
+|+.|+. .+.-.-+..+.+.+.+.+.++.+.++... . ....
T Consensus 3 lYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~---------------~---------------~p~~-------- 44 (187)
T PF05728_consen 3 LYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP---------------P---------------FPEE-------- 44 (187)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC---------------c---------------CHHH--------
Confidence 4567777 34455566778888887777777655310 0 0000
Q ss_pred hhccHHHHHHHHHHHHhcCCCc--EEEECC--CchHHHHHHHhCCcEEEE
Q 003222 99 AVAPRKSILKDEVEWLNSIKAD--LVVSDV--VPVACRAAADAGIRSVCV 144 (838)
Q Consensus 99 ~~~~~~~~l~~~~~~L~~~kPD--lVVsD~--~~~~~~aA~~lgIP~V~i 144 (838)
.+....+.+++..++ ++|... -+.+..+|.+.++|.|.+
T Consensus 45 -------a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLi 87 (187)
T PF05728_consen 45 -------AIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLI 87 (187)
T ss_pred -------HHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEE
Confidence 112224456666665 555443 566777888899999887
No 306
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=28.05 E-value=1.5e+02 Score=31.15 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 003222 33 VVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 33 ~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|-.....+.++|++|+++|..
T Consensus 27 ~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 27 CGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cHHHHHHHHHCCCeEEEEEcc
Confidence 566777788999999998764
No 307
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=27.91 E-value=2.5e+02 Score=29.26 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=22.4
Q ss_pred CCcEEEE-CC--CchHHHHHHHhCCcEEEEec
Q 003222 118 KADLVVS-DV--VPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 118 kPDlVVs-D~--~~~~~~aA~~lgIP~V~is~ 146 (838)
.||+||. |. ...+..=|..++||+|++.|
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivD 186 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVD 186 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEee
Confidence 7999884 53 55667678889999999854
No 308
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.51 E-value=58 Score=33.53 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=28.5
Q ss_pred EeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 20 YYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 20 ~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
++..-+|.|-.+++..||++|++++|+|...+.
T Consensus 5 IlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 5 ILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 356678899999999999999999999877654
No 309
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=27.35 E-value=4.2e+02 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.006 Sum_probs=26.7
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
|.+--+..+.+|.|.|=.+.++.+|-.-.-+|.+|.++..
T Consensus 18 ~~~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 18 YTIEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred CCCCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 4433333344799999888887777666666778887743
No 310
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=27.35 E-value=4.1e+02 Score=30.80 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=30.2
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
|++.-++.|.|=.+-+..|+++|+++|++|..+-..+
T Consensus 6 i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gp 42 (451)
T PRK01077 6 LVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGP 42 (451)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCC
Confidence 4445677888999999999999999999998875543
No 311
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=27.18 E-value=13 Score=42.27 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.2
Q ss_pred CCCCCCCccccc--cccceeccCCCCC
Q 003222 428 CTPEGDSTVKLS--TEDFEILHGDCQG 452 (838)
Q Consensus 428 ~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (838)
+.+.+++|||+| +||+|||+.||+.
T Consensus 358 ~~gi~~~liR~svGlE~~~dl~~dl~~ 384 (388)
T PRK07811 358 QLEVPDDLVRLSVGIEDVADLLADLEQ 384 (388)
T ss_pred hcCCCCCEEEEEeCCCCHHHHHHHHHH
Confidence 457889999999 9999999999865
No 312
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=26.91 E-value=95 Score=29.36 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.4
Q ss_pred EEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 19 AYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 19 l~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
.+|++|.|.|=.+-+..+++.|+++|.+|.++-+..
T Consensus 2 ~~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~ 37 (134)
T cd03109 2 MGFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQ 37 (134)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 467889999999999999999999999999986543
No 313
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=26.38 E-value=1e+02 Score=31.54 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=27.6
Q ss_pred EEEEEeecCCCcccHHH-HHHHHHHHHHCCCeEEEEeCC
Q 003222 16 LVFAYYVTGHGFGHATR-VVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r-~laLA~~L~~~Gh~V~~v~~~ 53 (838)
.+|++.++| ...+.. +..+++.|+++||+|.++...
T Consensus 6 k~IllgVTG--siaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 6 KRIGFGLTG--SHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CEEEEEEcC--HHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 456666654 467777 699999999999999877553
No 314
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=26.28 E-value=1.2e+02 Score=32.83 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=28.3
Q ss_pred cCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 23 TGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 23 ~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
.-.|.|=.+-+..||-+|+++|.+|.++-..+
T Consensus 11 ~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 67789999999999999999999999985544
No 315
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=26.26 E-value=83 Score=32.82 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=24.5
Q ss_pred HHHHhcCCCcEEEECC---CchHHHHHH----HhCCcEEEEec
Q 003222 111 VEWLNSIKADLVVSDV---VPVACRAAA----DAGIRSVCVTN 146 (838)
Q Consensus 111 ~~~L~~~kPDlVVsD~---~~~~~~aA~----~lgIP~V~is~ 146 (838)
...+++|+||++|.-. ...|...|+ ..|+|+|.+++
T Consensus 53 ~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D 95 (277)
T PRK00994 53 KKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGD 95 (277)
T ss_pred HHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcC
Confidence 4456899999999653 223444443 34899999976
No 316
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=26.11 E-value=2.6e+02 Score=28.24 Aligned_cols=61 Identities=13% Similarity=0.216 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEEeC--CCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhh
Q 003222 614 AGTILVLMTELGVRFEDSISMLVSSA--VPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHI 684 (838)
Q Consensus 614 ~g~i~~~~~~~g~~~~~g~~i~i~s~--iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~ 684 (838)
.|++.....+.|++ ++.+..... +|. .-...+++.+++.++|++++..+|.+-|.+.|...
T Consensus 99 ~glLl~~a~~~gi~---ai~L~~e~p~y~pD-------P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~~~ 161 (188)
T TIGR00162 99 SGLLLGVSELEGIP---GACLMGETPGYMID-------PKAAKAVLEVLCKMLSLEVSVEALEERAKEMEKII 161 (188)
T ss_pred HHHHHHHHHHCCCC---eEEEEEeCCCCCCC-------hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 35555445566653 455554443 333 33344566679999999999999999998888653
No 317
>PRK09028 cystathionine beta-lyase; Provisional
Probab=25.73 E-value=13 Score=42.24 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.3
Q ss_pred CCCCCCCccccc--cccceeccCCCCCC
Q 003222 428 CTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 428 ~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
+++.+.+|||++ +||+|||+.||+..
T Consensus 357 ~~~~~~~liR~svGlEd~~dLi~Dl~~A 384 (394)
T PRK09028 357 NWDFSKPLIRLHIGLEDVDDLIADLEAG 384 (394)
T ss_pred hhcCCCCeEEEEeCcCCHHHHHHHHHHH
Confidence 456677899999 99999999999874
No 318
>PRK06849 hypothetical protein; Provisional
Probab=25.72 E-value=2.6e+02 Score=31.47 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=25.1
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
+++||+ +|.+.+ -++.+|+.|.++||+|+++...+
T Consensus 4 ~~~VLI--~G~~~~---~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLI--TGARAP---AALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEE--eCCCcH---HHHHHHHHHHHCCCEEEEEeCCc
Confidence 455644 343322 48999999999999999886653
No 319
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=25.62 E-value=83 Score=30.37 Aligned_cols=39 Identities=21% Similarity=0.108 Sum_probs=33.6
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
+++.+|++...| --||-.++.-++++|+..|.+|.....
T Consensus 10 g~rprvlvak~G-lDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLG-LDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccC-ccccccchHHHHHHHHhCCceEEecCC
Confidence 578899887766 579999999999999999999987644
No 320
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=25.42 E-value=1.2e+02 Score=29.08 Aligned_cols=40 Identities=20% Similarity=-0.001 Sum_probs=33.7
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|++.++++. +..|-+|-.-..-++..|+.+|++|+++...
T Consensus 1 ~~~~~vl~~-~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 1 MKKKTVVLG-VIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CCCCEEEEE-eCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 677777655 5677899999999999999999999998764
No 321
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=25.30 E-value=98 Score=32.88 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=31.1
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
|+|.++ .-.|.|-.+-+..||.+|+++|++|.++-..+
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 346555 56779999999999999999999999885544
No 322
>PRK10037 cell division protein; Provisional
Probab=25.19 E-value=1.1e+02 Score=32.15 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=32.8
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
.|.+...-.|.|=.+-+..||.+|+++|++|.++-..+
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 46678888899999999999999999999999984443
No 323
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=25.02 E-value=6.9e+02 Score=24.94 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=26.3
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEe
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVT 51 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~ 51 (838)
.+|.|.|-.+-++.+|-....+|++|.++.
T Consensus 11 ~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 11 HTGNGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred ECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 478999999999999999999999997663
No 324
>PRK11519 tyrosine kinase; Provisional
Probab=24.89 E-value=5.3e+02 Score=31.91 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=31.6
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
..|++..+.+|.|=.+-+..||..|+..|++|.++-..
T Consensus 527 kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 527 NVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 45555666788999999999999999999999998543
No 325
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.31 E-value=5.1e+02 Score=29.84 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=31.7
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+..|+ .+.-.|.|-.+.|-.||+.|.++|+.|.+++..
T Consensus 100 P~vIm-mvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD 137 (451)
T COG0541 100 PTVIL-MVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD 137 (451)
T ss_pred CeEEE-EEeccCCChHhHHHHHHHHHHHcCCceEEEecc
Confidence 44453 467788999999999999999999999988764
No 326
>PRK08064 cystathionine beta-lyase; Provisional
Probab=23.39 E-value=12 Score=42.44 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=25.1
Q ss_pred cccCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 003222 420 LSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (838)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (838)
+++..+. +.|.+++++|++ |||.|||++||+..
T Consensus 345 ~~~~~~~-~~gi~~~liR~SvGle~~~dli~dl~~A 379 (390)
T PRK08064 345 MPKEERD-ERGITDGLLRLSVGLENVDDLIADFEQA 379 (390)
T ss_pred CCHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 3333333 556789999999 99999999998763
No 327
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.27 E-value=1.7e+02 Score=33.48 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCcEEEECCCc--------hHHH---HHHHhCCcEEEE
Q 003222 105 SILKDEVEWLNSIKADLVVSDVVP--------VACR---AAADAGIRSVCV 144 (838)
Q Consensus 105 ~~l~~~~~~L~~~kPDlVVsD~~~--------~~~~---aA~~lgIP~V~i 144 (838)
....+..+++++++||++|.-..| ++-+ ..+.++||.++-
T Consensus 63 ea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 63 EAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 344556888999999999976322 2222 235689999874
No 328
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=23.11 E-value=1.7e+02 Score=33.44 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCcEEEECCCc--------hHHH---HHHHhCCcEEEE
Q 003222 106 ILKDEVEWLNSIKADLVVSDVVP--------VACR---AAADAGIRSVCV 144 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~~~--------~~~~---aA~~lgIP~V~i 144 (838)
...+..+++++++||++|.-..| ++-+ ..+.++||.|+-
T Consensus 64 a~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 64 AVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 34556788999999999976322 2222 235689999874
No 329
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=23.03 E-value=99 Score=32.12 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=62.4
Q ss_pred eecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCccc--cc-ccCCCceeeeeeccCCCcccccccccChHHHHHHHHH
Q 003222 21 YVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF--TS-EIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSE 97 (838)
Q Consensus 21 ~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~--~~-~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 97 (838)
+-..--.-|+.+++.++..++.+|-.+.|++..+.+.. .. .....+..+.. .|-.|+......... .+..
T Consensus 85 IdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~-~w~~G~lTN~~~l~g------~~~~ 157 (251)
T KOG0832|consen 85 IDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHNR-KWLGGLLTNARELFG------ALVR 157 (251)
T ss_pred EecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceeee-eeccceeecchhhcc------cccc
Confidence 33334456899999999999999999999987653221 10 01111221111 244444321110000 0000
Q ss_pred HhhccHHHHHHHHHHHHhcCCCcEEEE-CC--CchHHHHHHHhCCcEEEE
Q 003222 98 TAVAPRKSILKDEVEWLNSIKADLVVS-DV--VPVACRAAADAGIRSVCV 144 (838)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVs-D~--~~~~~~aA~~lgIP~V~i 144 (838)
.+. -..+..-++....||+||. +. ...+++=|..++||.|.+
T Consensus 158 ----~~~-~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgI 202 (251)
T KOG0832|consen 158 ----KFL-SLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGI 202 (251)
T ss_pred ----ccc-CCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEE
Confidence 000 1223345567788999985 33 556777788999999998
No 330
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=22.83 E-value=1.5e+02 Score=27.99 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=24.6
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeE-EEE
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDV-HVV 50 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V-~~v 50 (838)
+.|++-.+.+|.-....++.+|.++.+.||+| .++
T Consensus 3 ~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vF 38 (128)
T PRK00207 3 YAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVF 38 (128)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEE
Confidence 34434344455566788899999999999984 543
No 331
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=22.32 E-value=1.7e+02 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=29.2
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
|.++.+..|.|=.+-+..||..|.+.|++|.++..
T Consensus 3 i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~ 37 (157)
T PF13614_consen 3 IAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDF 37 (157)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE-
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 55677888999999999999999999999888854
No 332
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=22.16 E-value=1.7e+02 Score=29.97 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=12.6
Q ss_pred HHHHhcCCCcEEEEC
Q 003222 111 VEWLNSIKADLVVSD 125 (838)
Q Consensus 111 ~~~L~~~kPDlVVsD 125 (838)
.++|++++||++|+-
T Consensus 73 ~~~l~~~~~D~iv~~ 87 (200)
T PRK05647 73 VEALDAYQPDLVVLA 87 (200)
T ss_pred HHHHHHhCcCEEEhH
Confidence 567889999999974
No 333
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=22.00 E-value=1e+03 Score=29.23 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=30.2
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
|++..++.|.|=.+-++.|++.|+++|.+|-++-+
T Consensus 5 l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 5 IYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 44466888899999999999999999999998854
No 334
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=21.76 E-value=1.5e+02 Score=29.23 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=30.8
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
|.+.....|.|=.+-+..||..|.++|++|.++-..+
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~ 37 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDP 37 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEEST
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCc
Confidence 4566788889999999999999999999999986543
No 335
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=21.44 E-value=1.3e+02 Score=34.47 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=27.4
Q ss_pred HHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEec
Q 003222 111 VEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 111 ~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~ 146 (838)
.+.+++.+||++|+.. -+..+|+++|||.+.+.+
T Consensus 343 ~~~~~~~~pDl~Ig~s--~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 343 IAAVEEYRPDLAIGTT--PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred HHHHhhcCCCEEEeCC--hhhHHHHHhCCCEEEecC
Confidence 4556789999999883 366789999999998765
No 336
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=21.11 E-value=1.3e+02 Score=31.82 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=31.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
|+|.++ .-.|.|=.+-+..||.+|+++|++|.++-..+
T Consensus 1 ~~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred CEEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 346666 56779999999999999999999999985544
No 337
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=20.99 E-value=2.4e+02 Score=28.43 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=24.1
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEE
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v 50 (838)
...++++ -|.| ||..-++.|.++|.++--.-+++
T Consensus 38 s~~~lVv-lGSG-GHT~EMlrLl~~l~~~y~~r~yI 71 (211)
T KOG3339|consen 38 SLSTLVV-LGSG-GHTGEMLRLLEALQDLYSPRSYI 71 (211)
T ss_pred cceEEEE-EcCC-CcHHHHHHHHHHHHhhcCceEEE
Confidence 3456443 4666 99999999999998874444444
No 338
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.44 E-value=6.9e+02 Score=32.53 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 31 TRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 31 ~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
.-++.++++|++.|++|.++...+
T Consensus 575 ~~~v~~i~al~~~G~~vI~v~~np 598 (1050)
T TIGR01369 575 YCCVHAVLALRELGYETIMINYNP 598 (1050)
T ss_pred hHHHHHHHHHHhCCCEEEEEecCC
Confidence 357889999999999999886654
No 339
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.34 E-value=6.6e+02 Score=32.75 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 31 TRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 31 ~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
.-|+.++++|++.|++|.++...+
T Consensus 576 y~~v~~~~aLk~~G~~vI~vn~np 599 (1068)
T PRK12815 576 YSSVHAAFALKKEGYETIMINNNP 599 (1068)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCc
Confidence 367889999999999999887655
No 340
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=20.34 E-value=1.3e+02 Score=31.45 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=22.0
Q ss_pred HHHHhcCCCcEEEECC---CchHHHHHHH----hCCcEEEEec
Q 003222 111 VEWLNSIKADLVVSDV---VPVACRAAAD----AGIRSVCVTN 146 (838)
Q Consensus 111 ~~~L~~~kPDlVVsD~---~~~~~~aA~~----lgIP~V~is~ 146 (838)
.+.+++++||++|.-. ...|...|+. .|+|+|.+++
T Consensus 52 ~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D 94 (276)
T PF01993_consen 52 TKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISD 94 (276)
T ss_dssp HHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEE
T ss_pred HHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcC
Confidence 4556899999998543 3345555543 5999999977
No 341
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=20.29 E-value=1.3e+02 Score=34.75 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.0
Q ss_pred HHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEec
Q 003222 111 VEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 111 ~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~ 146 (838)
.+++++.+||++|+... +..+|+++|||.+.+..
T Consensus 348 ~~~l~~~~pDllig~s~--~~~~A~k~gIP~vr~g~ 381 (422)
T TIGR02015 348 MEAVLEFEPDLAIGTTP--LVQFAKEHGIPALYFTN 381 (422)
T ss_pred HHHHhhCCCCEEEcCCc--chHHHHHcCCCEEEecc
Confidence 35678899999998843 45578999999998754
Done!