Query 003222
Match_columns 838
No_of_seqs 506 out of 3324
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:41:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 2.8E-40 9.6E-45 378.4 23.5 237 483-761 26-284 (520)
2 1pie_A Galactokinase; galactos 100.0 1.6E-33 5.4E-38 319.8 25.1 234 484-759 35-269 (419)
3 2a2c_A N-acetylgalactosamine k 100.0 2.1E-32 7.1E-37 314.9 28.1 235 483-760 42-277 (478)
4 1wuu_A Galactokinase; galactos 100.0 9.7E-32 3.3E-36 303.2 24.6 236 482-758 22-258 (399)
5 3k85_A D-glycero-D-manno-hepto 100.0 1E-31 3.5E-36 297.9 18.4 196 497-738 3-210 (357)
6 2cz9_A Probable galactokinase; 100.0 3.3E-29 1.1E-33 277.6 23.9 211 498-757 2-212 (350)
7 3s2u_A UDP-N-acetylglucosamine 100.0 2.8E-27 9.6E-32 263.7 26.8 325 13-373 1-357 (365)
8 4amg_A Snogd; transferase, pol 100.0 1.7E-27 5.7E-32 267.5 24.8 335 13-370 20-398 (400)
9 3k17_A LIN0012 protein; protei 100.0 1.2E-27 4.1E-32 265.8 22.8 193 495-738 4-226 (365)
10 2pg9_A Phosphomevalonate kinas 99.9 3.9E-27 1.3E-31 259.2 20.2 187 497-738 3-215 (337)
11 2iya_A OLEI, oleandomycin glyc 99.9 6.4E-26 2.2E-30 257.3 28.9 347 10-371 7-420 (424)
12 1kvk_A MK, mevalonate kinase; 99.9 4.3E-27 1.5E-31 264.9 16.4 210 497-739 5-244 (395)
13 3rsc_A CALG2; TDP, enediyne, s 99.9 9.7E-26 3.3E-30 254.7 26.9 345 10-371 17-412 (415)
14 3ia7_A CALG4; glycosysltransfe 99.9 3E-25 1E-29 249.0 28.4 343 16-372 5-398 (402)
15 1iir_A Glycosyltransferase GTF 99.9 9.9E-25 3.4E-29 247.1 29.2 344 16-387 1-407 (415)
16 3h4t_A Glycosyltransferase GTF 99.9 6.7E-25 2.3E-29 247.8 26.0 343 16-378 1-388 (404)
17 4fzr_A SSFS6; structural genom 99.9 8.8E-25 3E-29 245.7 24.5 318 13-350 13-369 (398)
18 1rrv_A Glycosyltransferase GTF 99.9 3.5E-24 1.2E-28 242.6 29.2 334 16-371 1-400 (416)
19 2yjn_A ERYCIII, glycosyltransf 99.9 1E-24 3.4E-29 249.0 24.4 346 13-372 18-435 (441)
20 3hbf_A Flavonoid 3-O-glucosylt 99.9 1.7E-23 5.8E-28 238.3 27.4 342 15-371 13-431 (454)
21 3oti_A CALG3; calicheamicin, T 99.9 2.9E-24 1E-28 241.6 20.5 330 16-371 21-396 (398)
22 2vch_A Hydroquinone glucosyltr 99.9 4.2E-23 1.4E-27 238.1 30.1 318 16-348 7-428 (480)
23 3tsa_A SPNG, NDP-rhamnosyltran 99.9 1E-23 3.4E-28 236.3 22.1 339 16-372 2-388 (391)
24 2c1x_A UDP-glucose flavonoid 3 99.9 2.4E-23 8.3E-28 238.5 24.9 343 15-371 7-429 (456)
25 2pq6_A UDP-glucuronosyl/UDP-gl 99.9 5.1E-23 1.7E-27 237.8 27.8 346 13-371 6-456 (482)
26 3gon_A Phosphomevalonate kinas 99.9 1E-23 3.5E-28 231.8 20.3 188 497-738 1-213 (335)
27 2iyf_A OLED, oleandomycin glyc 99.9 5.5E-23 1.9E-27 233.4 27.0 343 13-371 5-398 (430)
28 2p6p_A Glycosyl transferase; X 99.9 1.8E-23 6.2E-28 233.7 22.4 335 16-372 1-379 (384)
29 2x7i_A Mevalonate kinase; tran 99.9 5.1E-24 1.8E-28 231.7 17.4 183 496-739 5-188 (308)
30 4hac_A Mevalonate kinase; GHMP 99.9 4.9E-23 1.7E-27 225.1 21.9 182 490-739 14-195 (321)
31 3otg_A CALG1; calicheamicin, T 99.9 4.4E-23 1.5E-27 232.4 21.1 343 14-372 19-408 (412)
32 2acv_A Triterpene UDP-glucosyl 99.9 4.3E-22 1.5E-26 228.7 28.3 337 14-371 8-440 (463)
33 2hfs_A Mevalonate kinase, puta 99.9 1.1E-22 3.8E-27 223.6 20.6 189 495-738 11-201 (332)
34 1kkh_A Mevalonate kinase; mixe 99.9 1E-22 3.6E-27 222.3 19.7 192 497-738 5-205 (317)
35 2oi2_A Mevalonate kinase; enzy 99.8 1.6E-20 5.5E-25 202.4 18.9 170 497-739 5-176 (292)
36 1f0k_A MURG, UDP-N-acetylgluco 99.8 1.1E-18 3.7E-23 192.9 24.0 321 16-373 7-356 (364)
37 3hbm_A UDP-sugar hydrolase; PS 99.8 2.1E-18 7.3E-23 184.0 22.7 246 17-331 2-274 (282)
38 1h72_C HK, homoserine kinase; 99.8 4.3E-18 1.5E-22 183.8 18.6 175 498-737 3-178 (296)
39 2ww4_A 4-diphosphocytidyl-2C-m 99.8 6.2E-18 2.1E-22 181.3 15.5 167 499-738 4-181 (283)
40 2v8p_A 4-diphosphocytidyl-2-C- 99.7 8.7E-17 3E-21 171.4 17.4 165 497-737 4-173 (271)
41 2o6l_A UDP-glucuronosyltransfe 99.7 1.3E-16 4.4E-21 157.3 15.0 140 208-350 6-155 (170)
42 2gs8_A Mevalonate pyrophosphat 99.6 3.1E-16 1.1E-20 171.0 10.4 187 496-746 7-195 (317)
43 1uek_A 4-(cytidine 5'-diphosph 99.6 1.3E-14 4.4E-19 154.9 15.7 159 498-738 2-165 (275)
44 3pyf_A 4-diphosphocytidyl-2-C- 99.5 3E-13 1E-17 146.3 18.9 172 497-738 5-181 (306)
45 3qt5_A Mevalonate diphosphate 99.5 8.1E-14 2.8E-18 152.5 14.0 146 498-702 10-155 (332)
46 2jzc_A UDP-N-acetylglucosamine 99.5 1.7E-13 5.9E-18 140.5 12.0 150 217-371 22-222 (224)
47 1fi4_A Mevalonate 5-diphosphat 99.3 3.6E-11 1.2E-15 135.4 16.7 124 610-746 92-235 (416)
48 3okp_A GDP-mannose-dependent a 99.3 8.4E-11 2.9E-15 130.4 18.7 295 13-350 2-345 (394)
49 3c48_A Predicted glycosyltrans 99.3 1.9E-10 6.5E-15 129.9 21.4 130 212-350 232-392 (438)
50 2jjm_A Glycosyl transferase, g 99.2 7.7E-10 2.6E-14 123.2 24.8 301 13-350 14-351 (394)
51 3fro_A GLGA glycogen synthase; 99.2 5.5E-10 1.9E-14 125.5 23.4 131 210-351 239-398 (439)
52 3dzc_A UDP-N-acetylglucosamine 99.2 2.4E-10 8.1E-15 128.3 17.7 148 211-368 217-395 (396)
53 3ot5_A UDP-N-acetylglucosamine 99.2 3.8E-10 1.3E-14 126.9 18.9 148 212-372 216-393 (403)
54 2iw1_A Lipopolysaccharide core 99.2 1.9E-09 6.4E-14 118.6 24.0 132 210-350 183-338 (374)
55 2x6q_A Trehalose-synthase TRET 99.1 1.3E-09 4.4E-14 122.3 21.0 300 11-350 36-380 (416)
56 1vgv_A UDP-N-acetylglucosamine 99.1 1.5E-09 5.2E-14 120.2 19.8 150 212-371 193-373 (384)
57 3hul_A HSK, HK, homoserine kin 99.1 1.8E-09 6.1E-14 116.2 18.8 97 630-738 70-168 (298)
58 2r60_A Glycosyl transferase, g 99.0 3.1E-08 1.1E-12 114.0 25.3 131 211-350 245-425 (499)
59 1v4v_A UDP-N-acetylglucosamine 99.0 2.4E-09 8.1E-14 118.5 14.8 141 222-372 197-366 (376)
60 2iuy_A Avigt4, glycosyltransfe 99.0 1E-09 3.5E-14 119.7 9.8 260 13-348 1-307 (342)
61 2gek_A Phosphatidylinositol ma 98.9 1.2E-08 4.2E-13 113.4 17.8 292 14-350 19-350 (406)
62 3beo_A UDP-N-acetylglucosamine 98.8 5E-07 1.7E-11 99.3 23.4 148 211-371 196-373 (375)
63 1rzu_A Glycogen synthase 1; gl 98.8 2.6E-07 8.9E-12 105.7 21.3 130 210-347 277-438 (485)
64 4hwg_A UDP-N-acetylglucosamine 98.8 1.2E-07 4E-12 105.8 17.0 151 210-371 191-374 (385)
65 2qzs_A Glycogen synthase; glyc 98.6 8.7E-07 3E-11 101.3 19.1 130 210-347 277-439 (485)
66 2hy7_A Glucuronosyltransferase 98.6 8.3E-06 2.8E-10 91.4 25.2 134 223-370 221-373 (406)
67 3oy2_A Glycosyltransferase B73 98.5 3.1E-06 1.1E-10 94.4 20.0 130 212-350 171-356 (413)
68 3s28_A Sucrose synthase 1; gly 98.4 4.8E-06 1.6E-10 100.8 19.7 124 215-347 562-728 (816)
69 2vsy_A XCC0866; transferase, g 98.4 7.8E-07 2.7E-11 103.9 12.3 133 212-350 366-523 (568)
70 3lto_A Mevalonate diphosphate 98.4 1.9E-06 6.4E-11 93.0 14.1 74 617-702 80-158 (323)
71 2hke_A Diphosphomevalonate dec 98.4 3.4E-06 1.2E-10 93.7 15.4 80 610-702 75-155 (380)
72 2x0d_A WSAF; GT4 family, trans 98.3 3.9E-06 1.3E-10 94.4 14.6 95 247-350 276-380 (413)
73 2xci_A KDO-transferase, 3-deox 98.2 0.00012 4E-09 81.1 22.0 85 262-353 260-349 (374)
74 2f9f_A First mannosyl transfer 98.0 3E-05 1E-09 76.0 11.0 123 219-351 19-164 (177)
75 2bfw_A GLGA glycogen synthase; 97.8 0.00011 3.7E-09 72.9 12.5 129 210-350 24-182 (200)
76 3f0n_A Mevalonate pyrophosphat 97.7 6.6E-05 2.3E-09 82.9 8.6 60 630-702 122-181 (414)
77 3qhp_A Type 1 capsular polysac 97.0 0.0013 4.4E-08 63.0 7.6 117 224-350 2-141 (166)
78 3tov_A Glycosyl transferase fa 97.0 0.039 1.3E-06 60.1 20.4 250 13-306 6-287 (349)
79 1psw_A ADP-heptose LPS heptosy 96.8 0.032 1.1E-06 60.2 18.1 254 17-306 2-287 (348)
80 3rhz_A GTF3, nucleotide sugar 95.8 0.023 8E-07 61.7 9.6 111 223-346 177-301 (339)
81 3vue_A GBSS-I, granule-bound s 95.7 0.029 1E-06 64.9 10.3 131 211-348 313-476 (536)
82 4gyw_A UDP-N-acetylglucosamine 88.4 0.94 3.2E-05 54.1 9.0 125 214-347 514-663 (723)
83 3q3e_A HMW1C-like glycosyltran 87.3 0.48 1.6E-05 55.0 5.2 65 261-327 498-568 (631)
84 2wqk_A 5'-nucleotidase SURE; S 84.6 4.2 0.00015 41.7 10.2 36 13-53 1-36 (251)
85 1uqt_A Alpha, alpha-trehalose- 83.9 1.3 4.5E-05 50.2 6.6 76 264-350 333-420 (482)
86 3nb0_A Glycogen [starch] synth 82.1 1.2 4.3E-05 52.1 5.5 38 272-309 511-552 (725)
87 2gt1_A Lipopolysaccharide hept 79.3 3.7 0.00013 43.4 7.8 120 222-349 177-322 (326)
88 3ug7_A Arsenical pump-driving 76.7 11 0.00037 40.6 10.6 42 11-54 23-64 (349)
89 3ty2_A 5'-nucleotidase SURE; s 73.9 9.6 0.00033 39.1 8.6 38 13-53 9-46 (261)
90 3t5t_A Putative glycosyltransf 73.1 4.3 0.00015 46.0 6.4 78 263-350 353-439 (496)
91 3l7i_A Teichoic acid biosynthe 71.6 10 0.00035 45.1 9.6 95 211-307 526-642 (729)
92 3zq6_A Putative arsenical pump 65.6 28 0.00097 36.7 10.7 38 17-54 15-52 (324)
93 2phj_A 5'-nucleotidase SURE; S 64.9 32 0.0011 35.1 10.2 35 16-53 2-36 (251)
94 3igf_A ALL4481 protein; two-do 61.6 16 0.00056 39.6 7.9 36 17-52 3-38 (374)
95 3iqw_A Tail-anchored protein t 61.2 16 0.00054 39.1 7.6 38 17-54 17-54 (334)
96 2v4n_A Multifunctional protein 57.8 48 0.0016 33.8 10.1 35 16-53 2-36 (254)
97 2vqe_B 30S ribosomal protein S 55.5 50 0.0017 33.7 9.7 30 117-146 157-189 (256)
98 1l5x_A SurviVal protein E; str 53.3 79 0.0027 32.7 11.0 34 17-53 2-35 (280)
99 1j9j_A Stationary phase surviV 52.4 52 0.0018 33.4 9.3 34 17-53 2-35 (247)
100 2e6c_A 5'-nucleotidase SURE; S 48.7 1E+02 0.0035 31.2 10.8 34 17-53 2-35 (244)
101 3sbx_A Putative uncharacterize 47.2 30 0.001 33.7 6.3 38 276-313 105-152 (189)
102 3mc3_A DSRE/DSRF-like family p 47.1 20 0.00069 32.6 4.8 43 10-52 12-54 (134)
103 1jx7_A Hypothetical protein YC 45.4 24 0.00082 30.7 5.0 40 13-52 1-42 (117)
104 3vue_A GBSS-I, granule-bound s 45.3 12 0.0004 42.9 3.5 38 14-53 8-52 (536)
105 1ydh_A AT5G11950; structural g 43.8 25 0.00084 35.1 5.2 55 271-325 93-162 (216)
106 3io3_A DEHA2D07832P; chaperone 43.6 49 0.0017 35.4 7.9 39 16-54 18-58 (348)
107 2hy5_A Putative sulfurtransfer 40.9 34 0.0012 30.8 5.4 35 17-51 2-39 (130)
108 4ds3_A Phosphoribosylglycinami 40.1 57 0.0019 32.2 7.1 39 11-53 3-44 (209)
109 3bbn_B Ribosomal protein S2; s 39.0 38 0.0013 34.0 5.7 29 118-146 157-188 (231)
110 4fyk_A Deoxyribonucleoside 5'- 38.9 26 0.0009 32.8 4.2 69 275-348 64-141 (152)
111 3auf_A Glycinamide ribonucleot 38.6 75 0.0026 31.8 7.9 34 16-53 23-59 (229)
112 2d1p_B TUSC, hypothetical UPF0 38.3 39 0.0013 30.0 5.2 39 13-51 1-39 (119)
113 2hy5_B Intracellular sulfur ox 37.4 36 0.0012 31.1 4.9 41 12-52 4-44 (136)
114 3qua_A Putative uncharacterize 35.9 42 0.0014 32.9 5.4 38 276-313 114-161 (199)
115 4gi5_A Quinone reductase; prot 35.7 40 0.0014 35.0 5.4 43 10-52 17-61 (280)
116 2ywr_A Phosphoribosylglycinami 34.8 87 0.003 30.9 7.7 34 16-53 2-38 (216)
117 2khz_A C-MYC-responsive protei 31.3 53 0.0018 31.0 5.2 69 275-348 73-150 (165)
118 3qjg_A Epidermin biosynthesis 30.9 38 0.0013 32.5 4.0 36 16-53 6-41 (175)
119 3lqk_A Dipicolinate synthase s 30.2 49 0.0017 32.4 4.8 38 14-53 6-44 (201)
120 2lpm_A Two-component response 29.3 27 0.00091 31.4 2.5 40 108-147 43-88 (123)
121 1s2d_A Purine trans deoxyribos 29.0 53 0.0018 31.2 4.7 32 275-306 77-116 (167)
122 3r8n_B 30S ribosomal protein S 27.5 52 0.0018 32.7 4.4 27 28-54 40-66 (218)
123 1qv9_A F420-dependent methylen 26.3 80 0.0027 31.6 5.3 35 112-146 58-99 (283)
124 3pdi_B Nitrogenase MOFE cofact 25.8 2E+02 0.0067 31.9 9.4 32 111-144 368-399 (458)
125 1g3q_A MIND ATPase, cell divis 25.5 82 0.0028 30.8 5.6 38 17-54 4-41 (237)
126 3av3_A Phosphoribosylglycinami 25.0 69 0.0024 31.6 4.9 34 13-52 3-39 (212)
127 2i2c_A Probable inorganic poly 25.0 40 0.0014 34.6 3.2 53 279-349 35-93 (272)
128 1yt5_A Inorganic polyphosphate 24.9 40 0.0014 34.4 3.2 53 279-349 41-96 (258)
129 3ehd_A Uncharacterized conserv 24.5 74 0.0025 30.1 4.7 33 275-307 65-105 (162)
130 2iz6_A Molybdenum cofactor car 24.4 1.1E+02 0.0038 29.2 6.0 30 278-307 106-139 (176)
131 1id1_A Putative potassium chan 24.2 57 0.002 29.8 3.9 26 26-53 10-35 (153)
132 3tqr_A Phosphoribosylglycinami 23.6 2.5E+02 0.0087 27.6 8.7 16 110-125 75-90 (215)
133 3kjh_A CO dehydrogenase/acetyl 23.0 55 0.0019 32.2 3.8 36 17-53 2-37 (254)
134 1jkx_A GART;, phosphoribosylgl 22.7 1.4E+02 0.0047 29.4 6.5 33 17-53 2-37 (212)
135 3f6r_A Flavodoxin; FMN binding 22.5 1E+02 0.0035 27.7 5.3 38 13-53 1-39 (148)
136 1byi_A Dethiobiotin synthase; 22.5 96 0.0033 30.0 5.4 34 17-50 3-36 (224)
137 3to5_A CHEY homolog; alpha(5)b 22.4 95 0.0033 28.0 4.9 38 111-148 50-97 (134)
138 2f62_A Nucleoside 2-deoxyribos 22.3 76 0.0026 29.9 4.3 33 275-307 63-106 (161)
139 2an1_A Putative kinase; struct 22.2 46 0.0016 34.4 3.1 32 275-306 59-94 (292)
140 3of5_A Dethiobiotin synthetase 21.9 1.1E+02 0.0036 30.4 5.6 37 13-51 4-40 (228)
141 3da8_A Probable 5'-phosphoribo 21.7 1.3E+02 0.0043 29.8 6.0 16 110-125 81-96 (215)
142 4dzz_A Plasmid partitioning pr 21.6 88 0.003 29.7 4.9 37 18-54 4-40 (206)
143 2r8r_A Sensor protein; KDPD, P 21.6 1.4E+02 0.0049 29.7 6.4 39 15-54 6-44 (228)
144 2a33_A Hypothetical protein; s 21.5 1E+02 0.0034 30.6 5.2 43 271-313 97-153 (215)
145 3gl9_A Response regulator; bet 21.5 1.3E+02 0.0046 25.5 5.7 38 111-148 39-86 (122)
146 4b4o_A Epimerase family protei 21.5 76 0.0026 32.4 4.6 33 16-53 1-33 (298)
147 1qzu_A Hypothetical protein MD 21.5 68 0.0023 31.6 3.9 43 10-54 14-57 (206)
148 1mvl_A PPC decarboxylase athal 21.3 80 0.0027 31.2 4.4 42 9-53 13-54 (209)
149 3mcu_A Dipicolinate synthase, 21.1 75 0.0026 31.3 4.1 37 15-53 5-42 (207)
150 1ccw_A Protein (glutamate muta 20.5 1.1E+02 0.0039 27.6 5.0 39 13-52 1-39 (137)
151 1g63_A Epidermin modifying enz 20.4 64 0.0022 31.1 3.4 35 17-53 4-38 (181)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=2.8e-40 Score=378.42 Aligned_cols=237 Identities=21% Similarity=0.337 Sum_probs=191.2
Q ss_pred HHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEc--CCccchhhhhhhhccCCCCCCCCC
Q 003222 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI--SPSKQRLWKHALARHNDKGQGPMP 560 (838)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~--~d~~~~l~~~~~~~~~~~~~~~~~ 560 (838)
....+...||.+ +.++++|||||||||||||||||+||||||+++|+++++++ +|++++++
T Consensus 26 l~~~F~~~fg~~-p~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~i~---------------- 88 (520)
T 3v2u_C 26 VVDAFFQTYHVK-PDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLT---------------- 88 (520)
T ss_dssp HHHHHHHHHSSC-CSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEEEE----------------
T ss_pred HHHHHHHHhCCC-CCEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEEEE----------------
Confidence 344577899964 55789999999999999999999999999999999999998 66655554
Q ss_pred eEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHH---HHHHh------CCCCCCC
Q 003222 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV---LMTEL------GVRFEDS 631 (838)
Q Consensus 561 ~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~---~~~~~------g~~~~~g 631 (838)
|.+..+. ...|++++++. ++..+ .....|+||++|++.. ++++. |..+ .|
T Consensus 89 -----S~~~~~~--~~~~~l~~~~~-----~~~i~--------~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~-~G 147 (520)
T 3v2u_C 89 -----NADPKFA--QRKFDLPLDGS-----YMAID--------PSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL-VG 147 (520)
T ss_dssp -----ESSTTSC--CEEEECCTTCC-----CCCCC--------TTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC-CC
T ss_pred -----ECCCCCC--ceEEEeccCcc-----ccccC--------cccccHHHHHHHHHHHHHHHHHhhcccccccCCC-Cc
Confidence 3221110 01233322220 01110 1236899999997633 34332 3344 79
Q ss_pred EEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEE
Q 003222 632 ISMLVSSAVPEGKGVSSSASVEVASMSAIAAAH---GLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAM 708 (838)
Q Consensus 632 ~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~---~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~ 708 (838)
|++.|.|+||.|+|| |||++||++.|++.++ ++.+++.+++++|+++|+ ++|.|||+|||+++++|++++++++
T Consensus 148 ~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~-~vG~~~G~mDQ~as~~G~~g~~l~i 224 (520)
T 3v2u_C 148 AQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDHALYV 224 (520)
T ss_dssp EEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGG-GGTCCCCSHHHHHHHHCBTTBEEEE
T ss_pred eEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH-HhCCCCchhhHHHHHhCCCCeEEEE
Confidence 999999999999999 9999999999999999 778999999999999997 9999999999999999999999999
Q ss_pred EecC-CceeeeeccCC----CeEEEEEeCCC---CCcCCCCchhhHHHHHhcChHHHhccc
Q 003222 709 VCQP-AELLGVVEIPS----HIRFWGIDSGI---RHSVGGADYGSVRAGAFMGRKMIKSTA 761 (838)
Q Consensus 709 d~~~-~~~~~~v~~~~----~~~~vi~~s~~---~~~~~~~~y~~~r~~~~~g~~~l~~~~ 761 (838)
||++ +++ .++++|. ++.|+|+||++ +|.+++++||.||++|..+.+.|....
T Consensus 225 d~~~~l~~-~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~ 284 (520)
T 3v2u_C 225 EFRPKLKA-TPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRY 284 (520)
T ss_dssp ECSSSCEE-EEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHT
T ss_pred EcCCCcee-EEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhh
Confidence 9999 766 6888886 89999999999 889999999999999999999987643
No 2
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.6e-33 Score=319.78 Aligned_cols=234 Identities=23% Similarity=0.361 Sum_probs=192.1
Q ss_pred HHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEE
Q 003222 484 RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQ 563 (838)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~ 563 (838)
...+...||.++.+++++|||||||+|||+||+|+.+|++||++++++.+++++++.+ +
T Consensus 35 ~~~f~~~~g~~~~~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~i---------------------~ 93 (419)
T 1pie_A 35 TEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV---------------------K 93 (419)
T ss_dssp HHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEE---------------------E
T ss_pred HHHHHHHhCCCCceEEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCCCEE---------------------E
Confidence 3457788996554378899999999999999999999999999999999999876543 3
Q ss_pred EEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCC
Q 003222 564 IVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEG 643 (838)
Q Consensus 564 i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g 643 (838)
|.+.+.+. ....+++++++. ..+..+|.||+++++..+. +.|..+..|+++.+.++||.|
T Consensus 94 i~~~~~~~---~~~~~~~~~~~~----------------~~~~~~~~n~v~~~~~~l~-~~g~~~~~g~~i~i~s~IP~g 153 (419)
T 1pie_A 94 LYSENFPK---LGVIEFDLDEVE----------------KKDGELWSNYVKGMIVMLK-GAGYEIDKGFELLIKGEIPTA 153 (419)
T ss_dssp EEETTCGG---GCCEEEETTCTT----------------SCCTTCTHHHHHHHHHHHH-HTTCCCCSCEEEEEEECSCTT
T ss_pred EEECCCCC---cceeEEeccccc----------------CCCCcCHHHHHHHHHHHHH-HhCCCCCCCEEEEEECCCCCC
Confidence 33321100 001123332210 0123689999999887754 555554469999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC-
Q 003222 644 KGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP- 722 (838)
Q Consensus 644 ~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~- 722 (838)
+|||||||+++|++.|++.++|.++++.+|+++|+++|++++|.|||+|||+++++||.+.++++++++..+ +++++|
T Consensus 154 aGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~-~~l~~~~ 232 (419)
T 1pie_A 154 SGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKY-EMVPVEL 232 (419)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCE-EEEECCC
T ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCCCce-EEeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888766 788887
Q ss_pred CCeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHhc
Q 003222 723 SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKS 759 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~~ 759 (838)
+++.++|++|++++++.+++||.||.++...++.|.+
T Consensus 233 ~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~ 269 (419)
T 1pie_A 233 RDYDIVIMNTNKPRALTESKYNERFAETREALKRMQT 269 (419)
T ss_dssp TTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCccccccchHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999998888888764
No 3
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=2.1e-32 Score=314.87 Aligned_cols=235 Identities=21% Similarity=0.321 Sum_probs=192.0
Q ss_pred HHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeE
Q 003222 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVL 562 (838)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i 562 (838)
....+...||. ++.++++|||||+|+|||+||+|+.||++||++++++.+++++++.+
T Consensus 42 ~~~~f~~~fg~-~~~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~i--------------------- 99 (478)
T 2a2c_A 42 LKEMFNSKFGS-IPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYAL--------------------- 99 (478)
T ss_dssp HHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCE---------------------
T ss_pred HHHHHHHHhCC-CCCEEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECCCCeE---------------------
Confidence 34567889995 55678999999999999999999999999999999999999876544
Q ss_pred EEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCC
Q 003222 563 QIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPE 642 (838)
Q Consensus 563 ~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~ 642 (838)
+|.+.+.++ +.++++++++. . ......|.||+++++..+++.++.....||++.+.|+||.
T Consensus 100 ~i~~~~~~~----~~~~~~~~~l~-------~--------~~~~~~~~n~v~~a~~~v~~~~~~~~~~g~~i~i~s~IP~ 160 (478)
T 2a2c_A 100 QLANTNPLY----PDFSTSANNIQ-------I--------DKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPP 160 (478)
T ss_dssp EEEESSTTS----CCEEECCCCC-----------------CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEECSCT
T ss_pred EEEECCCCC----cceeccchhcc-------c--------CCCcccHHHHHHHHHHHHHHHHhccCCCceEEEEECCCCC
Confidence 343322110 12334433321 0 0134689999988777766665541136999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC
Q 003222 643 GKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722 (838)
Q Consensus 643 g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~ 722 (838)
|+|||||||++||++.|++.++|.++++.+++++|+.+|+ +.|.+||+|||+++++|+.+.+++++|++..+ .++++|
T Consensus 161 g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~-~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~-~~~~~~ 238 (478)
T 2a2c_A 161 SSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRA-TDVKLP 238 (478)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG-GGTCCCCSHHHHHHHHCBTTBEEEEETTTTEE-EEECCC
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hcCCCCccHHHHHHHhccCCcEEEEEcCCCce-EEecCC
Confidence 9999999999999999999999999999999999999997 68999999999999999888899999998655 688888
Q ss_pred CCeEEEEEeCCCCCc-CCCCchhhHHHHHhcChHHHhcc
Q 003222 723 SHIRFWGIDSGIRHS-VGGADYGSVRAGAFMGRKMIKST 760 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~-~~~~~y~~~r~~~~~g~~~l~~~ 760 (838)
.++.|+|+||+++|+ ..+++||.||++|..+.+.|.+.
T Consensus 239 ~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~ 277 (478)
T 2a2c_A 239 SGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKY 277 (478)
T ss_dssp TTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCcccccccchhHHHHHHHHHHHHHHHhh
Confidence 889999999999996 45689999999998888887654
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.98 E-value=9.7e-32 Score=303.22 Aligned_cols=236 Identities=25% Similarity=0.382 Sum_probs=186.2
Q ss_pred HHHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCe
Q 003222 482 RERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPV 561 (838)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 561 (838)
.....+...||. ++.++++|||||||+|||+||+||.+|++||++++++.+++++++.++
T Consensus 22 ~~~~~f~~~~~~-~~~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~i~------------------- 81 (399)
T 1wuu_A 22 EARRAFREEFGA-EPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVS------------------- 81 (399)
T ss_dssp HHHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEE-------------------
T ss_pred HHHHHHHHHhCC-CCCEEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCCCeEE-------------------
Confidence 345567788996 456788999999999999999999999999999999999998765443
Q ss_pred EEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCC
Q 003222 562 LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVP 641 (838)
Q Consensus 562 i~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP 641 (838)
|.+.+.+.. .....+++++.+ +++. ..+..+|.||+++++..+ .+..+ .|+++.+.|+||
T Consensus 82 --i~~~~~~~~-~~~~~~~~~~~~----~~~~---------~~~~~~~~n~v~~a~~~l---~~~~~-~g~~i~i~s~IP 141 (399)
T 1wuu_A 82 --LLTTSEGAD-EPQRLQFPLPTA----QRSL---------EPGTPRWANYVKGVIQYY---PAAPL-PGFSAVVVSSVP 141 (399)
T ss_dssp --EEECCSSSC-SCSEEEEECCCS----SCCC---------CCCSSGGGHHHHHHHHHC---SSSCC-CEEEEEEEECSC
T ss_pred --EEECCCCCc-cccceEEecCcc----cccc---------ccCCCCHHHHHHHHHHHh---cCCCC-CCeEEEEECCCC
Confidence 333211100 000011222210 0000 113467999999988765 34444 699999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeecc
Q 003222 642 EGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEI 721 (838)
Q Consensus 642 ~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~ 721 (838)
.|+|||||||+++|++.|++.++|.++++.+++++|+++|+.++|.|||+|||+++++||.+.++++++++..+ +++++
T Consensus 142 ~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~-~~~~~ 220 (399)
T 1wuu_A 142 LGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLET-SLVPL 220 (399)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEEEC
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecCCCce-EEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887665 67777
Q ss_pred C-CCeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHh
Q 003222 722 P-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIK 758 (838)
Q Consensus 722 ~-~~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~ 758 (838)
| .++.++|++|++++++.++.|+.||.++...++.|.
T Consensus 221 ~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~ 258 (399)
T 1wuu_A 221 SDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALG 258 (399)
T ss_dssp CCSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEEECCCccccccccHHHHHHHHHHHHHHhC
Confidence 6 489999999999999998999999988766666663
No 5
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1e-31 Score=297.91 Aligned_cols=196 Identities=17% Similarity=0.168 Sum_probs=154.5
Q ss_pred eEEEEcccccccccccccc------CCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccc
Q 003222 497 IFVARAPGRLDVMGGIADY------SGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 570 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy------~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~ 570 (838)
+++++|||||||+|||||| +||+||++||++++++++++++|+++++++.+ ++.
T Consensus 3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i~s~~-----------~~~--------- 62 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYD-----------AQC--------- 62 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEEETT-----------TTE---------
T ss_pred EEEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCCeEEEEECC-----------CCc---------
Confidence 4688999999999999999 89999999999999999999988766654321 110
Q ss_pred cCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHH
Q 003222 571 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (838)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (838)
..++++.+ ++ +..+|.||+++++..+. +.+.....||++.+.++||.|+||||||
T Consensus 63 ------~~~~~~~~------~~------------~~~~~~~~v~~~~~~l~-~~~~~~~~g~~i~i~~~iP~g~GLgSSa 117 (357)
T 3k85_A 63 ------CKSYLSMS------QL------------EIDGEASLIKGVYNRII-RDYRLEPKSFKITTYNDAPAGSGLGTSS 117 (357)
T ss_dssp ------EEEEECCS------SC------------CCCSSSHHHHHHHHHHH-HHTTCCCCCEEEEEEESSCSSSSSCHHH
T ss_pred ------eEEEeccc------cc------------cccchHHHHHHHHHHHH-HhcCCCCCCEEEEEecCCCCCCCchHHH
Confidence 11223222 01 22589999999998865 4443213699999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCC------
Q 003222 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH------ 724 (838)
Q Consensus 651 A~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~------ 724 (838)
|++||++.|++.++|.++++.+++++|+++|+.++|.|||+|||+++++||...+.+.++++..+ .++++++.
T Consensus 118 a~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~-~~l~~~~~~~~~l~ 196 (357)
T 3k85_A 118 TMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIV-NPLKMKRWIVDELE 196 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEE-EEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEeCCCceeE-EEEecChhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999987766665555444 57777643
Q ss_pred eEEEEEeCCCCCcC
Q 003222 725 IRFWGIDSGIRHSV 738 (838)
Q Consensus 725 ~~~vi~~s~~~~~~ 738 (838)
..++|++|+++|++
T Consensus 197 ~~lvi~~t~~~~~a 210 (357)
T 3k85_A 197 SSMVLYFTGRSRSS 210 (357)
T ss_dssp HTEEEECC------
T ss_pred ceEEEEECCCcccH
Confidence 57899999999874
No 6
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.97 E-value=3.3e-29 Score=277.62 Aligned_cols=211 Identities=26% Similarity=0.435 Sum_probs=171.4
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
++++|||||||+|||+||+|+.++++||++++++.+++++++.+++.+. +.+ ..
T Consensus 2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~---------------------~~~-----~~ 55 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEHF---------------------GEE-----RK 55 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEETTT---------------------TEE-----EE
T ss_pred eEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCCCeEEEEEC---------------------CCC-----cc
Confidence 5789999999999999999999999999999999999877654433211 000 00
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
.++ ++. .+...|.||+++++..+ ++.+... .|++|.+.++||.|+|||||||+++|++
T Consensus 56 ~~~-l~~-------------------~~~~~~~~~~~~~~~~l-~~~~~~~-~g~~i~i~s~IP~g~GLGSSaA~~vA~~ 113 (350)
T 2cz9_A 56 FSL-NDL-------------------RKENSWIDYVKGIFWVL-KESDYEV-GGIKGRVSGNLPLGAGLSSSASFEVGIL 113 (350)
T ss_dssp ECT-TCC-------------------CCCSSTHHHHHHHHHHH-HHTTCCC-CEEEEEEECSCCTTSSSCHHHHHHHHHH
T ss_pred ccc-cCC-------------------CCCCcHHHHHHHHHHHH-HhcCCCC-CCeEEEEECCCCCCCCcchHHHHHHHHH
Confidence 001 110 02368999999987665 4566654 6999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCc
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~ 737 (838)
.|++.++|.++++++++++|+.+|++++|+|||+|||+++++|+.++++++|+++..+ +++++|.++.++|++++++|+
T Consensus 114 ~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~-~~l~~~~~~~~vl~~~~~~~~ 192 (350)
T 2cz9_A 114 ETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDY-EYIPFPKDVSILVFYTGVRRE 192 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEEECCTTEEEEEEECSCC--
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEecCCCcE-EEEcCCCCcEEEEEECCCCCc
Confidence 9999999999999999999999999999999999999999999999999999887665 788888889999999999998
Q ss_pred CCCCchhhHHHHHhcChHHH
Q 003222 738 VGGADYGSVRAGAFMGRKMI 757 (838)
Q Consensus 738 ~~~~~y~~~r~~~~~g~~~l 757 (838)
+.+++|+.||.++..+.+.+
T Consensus 193 ~~t~~~~~r~~~~~~a~~~~ 212 (350)
T 2cz9_A 193 LASSEYAERKHIAEESLKIL 212 (350)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHh
Confidence 88888999987766555444
No 7
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.95 E-value=2.8e-27 Score=263.73 Aligned_cols=325 Identities=14% Similarity=0.040 Sum_probs=199.6
Q ss_pred CceEEEEEeecCCC-cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHH
Q 003222 13 SKHLVFAYYVTGHG-FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLAS 91 (838)
Q Consensus 13 m~~~~Il~~v~g~G-~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 91 (838)
|++ +|++ ++.| .||++|+++||++|+++||+|+|++.... +....++..++.+..+. -.++... .....
T Consensus 1 M~~-~i~i--~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g-~e~~~v~~~g~~~~~i~-~~~~~~~-----~~~~~ 70 (365)
T 3s2u_A 1 MKG-NVLI--MAGGTGGHVFPALACAREFQARGYAVHWLGTPRG-IENDLVPKAGLPLHLIQ-VSGLRGK-----GLKSL 70 (365)
T ss_dssp --C-EEEE--ECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSS-THHHHTGGGTCCEEECC------------------
T ss_pred CCC-cEEE--EcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCch-HhhchhhhcCCcEEEEE-CCCcCCC-----CHHHH
Confidence 443 4543 3445 49999999999999999999999986432 21222221222232210 0111000 00000
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCc---hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHH
Q 003222 92 LEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIV 168 (838)
Q Consensus 92 l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~---~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~ 168 (838)
+.....+ ...+.+..++|++++||+||++..+ .+.++|+.++||++.+....+. .. .
T Consensus 71 ~~~~~~~-----~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~~~----G~-----------~ 130 (365)
T 3s2u_A 71 VKAPLEL-----LKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAVA----GT-----------A 130 (365)
T ss_dssp --CHHHH-----HHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSSSC----CH-----------H
T ss_pred HHHHHHH-----HHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecchhh----hh-----------H
Confidence 1001111 1123445678999999999998533 3567889999999987432211 00 0
Q ss_pred HHHHhhccccceEEe-cCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhh-HHhh-
Q 003222 169 WQIAEDYSHCEFLIR-LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKL-KEEY- 243 (838)
Q Consensus 169 ~~l~~~y~~~d~ll~-~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~l-l~~l- 243 (838)
.++...+ ++.++. ++...+......+++.|+...... ..+...++++++++|++++||.+.. .+. .+.+
T Consensus 131 nr~l~~~--a~~v~~~~~~~~~~~~k~~~~g~pvr~~~~~----~~~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~ 204 (365)
T 3s2u_A 131 NRSLAPI--ARRVCEAFPDTFPASDKRLTTGNPVRGELFL----DAHARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALA 204 (365)
T ss_dssp HHHHGGG--CSEEEESSTTSSCC---CEECCCCCCGGGCC----CTTSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHH
T ss_pred HHhhccc--cceeeecccccccCcCcEEEECCCCchhhcc----chhhhcccCCCCcEEEEECCcCCccccchhhHHHHH
Confidence 1111122 222221 221111111112233333221111 1123345667888999999999874 222 2222
Q ss_pred -CC--CCc-EEEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC--
Q 003222 244 -LP--SGW-KCLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY-- 309 (838)
Q Consensus 244 -~~--~~~-~~vv~G~~~~~--------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~-- 309 (838)
++ ..+ .+.++|....+ ++.|+.+.+|+++|+++|+.||++||++|.+|++|++++|+|+|++|.+.
T Consensus 205 ~l~~~~~~~vi~~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~raG~~Tv~E~~a~G~P~Ilip~p~~~ 284 (365)
T 3s2u_A 205 QVPLEIRPAIRHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAI 284 (365)
T ss_dssp TSCTTTCCEEEEECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECC-----
T ss_pred hcccccceEEEEecCccccccccceecccccccccccchhhhhhhhccceEEEecCCcchHHHHHHhCCCeEEeccCCCC
Confidence 22 233 34456765421 57789999999999999999999999999999999999999999999653
Q ss_pred CCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHhcc
Q 003222 310 FNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETAIG 373 (838)
Q Consensus 310 ~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~~~ 373 (838)
..+|..||+.+++.|+|+++..++++++.+.++|.+++++++.+. ..+++++++++.|++++.|
T Consensus 285 ~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 285 DDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVARG 357 (365)
T ss_dssp CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 357999999999999999999999999999999999999875422 5789999999999999765
No 8
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.95 E-value=1.7e-27 Score=267.51 Aligned_cols=335 Identities=16% Similarity=0.094 Sum_probs=187.3
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcc---ccc-ccccC-
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAV---QAD-ALTVD- 87 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~---~~~-~~~~~- 87 (838)
-+.|+|||+ +.++.||++|+++||++|+++||+|+|++... +..... .+..+.....+.... ... ....+
T Consensus 20 ~~~MRIL~~-~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~---~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (400)
T 4amg_A 20 FQSMRALFI-TSPGLSHILPTVPLAQALRALGHEVRYATGGD---IRAVAE-AGLCAVDVSPGVNYAKLFVPDDTDVTDP 94 (400)
T ss_dssp -CCCEEEEE-CCSSHHHHGGGHHHHHHHHHTTCEEEEEECSS---THHHHT-TTCEEEESSTTCCSHHHHSCCC------
T ss_pred CCCCeEEEE-CCCchhHHHHHHHHHHHHHHCCCEEEEEeCcc---hhhHHh-cCCeeEecCCchhHhhhccccccccccc
Confidence 345678764 67789999999999999999999999998753 111111 111221211111110 000 00000
Q ss_pred ---hHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHHHhhhhhcc
Q 003222 88 ---RLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYAEYVMAAG 161 (838)
Q Consensus 88 ---~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~~~~~~~~~ 161 (838)
.......+...+.......+....+.+++++||+||+|. .+++..+|+.+|||.+.+....+. ..+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~--- 171 (400)
T 4amg_A 95 MHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLGALIR--- 171 (400)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHHHHHH---
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccchhhHHH---
Confidence 000001111111111223345557788899999999995 778889999999999876321110 11111100
Q ss_pred cchHHHHHHHHhhccc----c-ceEEe-cCCC--CCCCC---CCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEc
Q 003222 162 HHHRSIVWQIAEDYSH----C-EFLIR-LPGY--CPMPA---FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNF 230 (838)
Q Consensus 162 ~~~~~i~~~l~~~y~~----~-d~ll~-~~~~--~~~p~---~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~ 230 (838)
..+ ......+.. . ..... .+.. ...+. .+........... .+....++++..+++++|||++
T Consensus 172 ---~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~v~vs~ 244 (400)
T 4amg_A 172 ---RAM-SKDYERHGVTGEPTGSVRLTTTPPSVEALLPEDRRSPGAWPMRYVPYN---GGAVLPDWLPPAAGRRRIAVTL 244 (400)
T ss_dssp ---HHT-HHHHHHTTCCCCCSCEEEEECCCHHHHHTSCGGGCCTTCEECCCCCCC---CCEECCTTCSCCTTCCEEEECC
T ss_pred ---HHH-HHHHHHhCCCcccccchhhcccCchhhccCcccccCCcccCccccccc---ccccCcccccccCCCcEEEEeC
Confidence 000 111111110 0 00110 0000 00000 0111111111000 0111123555567889999999
Q ss_pred CCCCch-------hhhHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHc
Q 003222 231 GGQPAG-------WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298 (838)
Q Consensus 231 Gs~~~~-------~~ll~~l~~~~~~~vv~-G~~~~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~ 298 (838)
||.... ..+++.+...++.+++. +.... .+|+|+.+.+|.+ +.++|++||+||||||+||++|++++
T Consensus 245 Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~~v~h~G~~s~~Eal~~ 323 (400)
T 4amg_A 245 GSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLALLGELPANVRVVEWIP-LGALLETCDAIIHHGGSGTLLTALAA 323 (400)
T ss_dssp CSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCCCCCCCTTEEEECCCC-HHHHHTTCSEEEECCCHHHHHHHHHH
T ss_pred CcccccCccHHHHHHHHHHhhccCceEEEEecCccccccccCCCCEEEEeecC-HHHHhhhhhheeccCCccHHHHHHHh
Confidence 998642 12333454556655554 33221 2789999876653 45899999999999999999999999
Q ss_pred CCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc----------CCCCHHHHHHHHHH
Q 003222 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----------GGINGGEVAAHILQ 368 (838)
Q Consensus 299 GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~----------~~~~g~~~~a~~i~ 368 (838)
|||+|++| .+.||+.||+++++.|+|+.++..+.++ ++|+++|+++. |+ ...+|+.++|+.|+
T Consensus 324 GvP~v~~P--~~~dQ~~na~~v~~~G~g~~l~~~~~~~----~al~~lL~d~~-~r~~a~~l~~~~~~~~~~~~~a~~le 396 (400)
T 4amg_A 324 GVPQCVIP--HGSYQDTNRDVLTGLGIGFDAEAGSLGA----EQCRRLLDDAG-LREAALRVRQEMSEMPPPAETAAXLV 396 (400)
T ss_dssp TCCEEECC--C---CHHHHHHHHHHTSEEECCTTTCSH----HHHHHHHHCHH-HHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCEEEec--CcccHHHHHHHHHHCCCEEEcCCCCchH----HHHHHHHcCHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999 6889999999999999999998877764 56777887652 21 23446667777766
Q ss_pred HH
Q 003222 369 ET 370 (838)
Q Consensus 369 ~~ 370 (838)
++
T Consensus 397 ~l 398 (400)
T 4amg_A 397 AL 398 (400)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 9
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.95 E-value=1.2e-27 Score=265.80 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=149.2
Q ss_pred CceEEEEccccccccccccccC-CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 495 EEIFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 495 ~~~~~~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
..+++++|||||+|+|||+||+ ||+||++||+++++++++++++.. |.|.+++
T Consensus 4 ~~~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~~-----------------------i~s~~~~--- 57 (365)
T 3k17_A 4 KNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNE-----------------------LWIPHYE--- 57 (365)
T ss_dssp -CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE-----------------------EECTTCS---
T ss_pred eeEEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCCcE-----------------------EEecCCC---
Confidence 3478899999999999999995 999999999999999999987642 2221110
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCC----CCCC
Q 003222 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPE----GKGV 646 (838)
Q Consensus 574 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~---~~g~~~~~g~~i~i~s~iP~----g~GL 646 (838)
..+++++++. + ..+...| +|++++++.+.+ +.|... .||++.|.|+||. ++||
T Consensus 58 --~~~~~~~~~~------~----------~~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GL 117 (365)
T 3k17_A 58 --NPVSWPIGGE------L----------KPDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGL 117 (365)
T ss_dssp --SCBCCCTTSC------C----------CCSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSS
T ss_pred --cceeeecccC------C----------CCCCChH-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEcCCCCCCCCCCcc
Confidence 0122222210 0 0122456 999999887543 456665 7999999999996 5699
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE-ecC-------------
Q 003222 647 SSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV-CQP------------- 712 (838)
Q Consensus 647 gSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d-~~~------------- 712 (838)
|||||++||++.|++.++++++++.+++++|+.+|+.++|.++| |||+++++||. +++. +.+
T Consensus 118 gSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~~g-~D~~~~~~Gg~---~~~~~~~~~~~~~~~~~~~l~ 193 (365)
T 3k17_A 118 GSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSC-GDIASCMYGGW---IAYTTFDQEWVKHRLAYKSLE 193 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSSCCS-HHHHHHHHCSE---EEEECCCHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCc-ccHHHHhcCCE---EEEecCCHHHhhhhcccchhh
Confidence 99999999999999999999999999999999999999995555 99999999993 4443 211
Q ss_pred --------CceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 713 --------AELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 713 --------~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
....+++++|.+ .++++||+++|++
T Consensus 194 ~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT 226 (365)
T 3k17_A 194 WFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVST 226 (365)
T ss_dssp HHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCH
T ss_pred hhhccCCCCcceeeccCCcc-cEEEEECCCccch
Confidence 222357787777 9999999999975
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.95 E-value=3.9e-27 Score=259.19 Aligned_cols=187 Identities=18% Similarity=0.111 Sum_probs=147.2
Q ss_pred eEEEEcccccccccccc-ccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 497 IFVARAPGRLDVMGGIA-DYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~-Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
++.++|||||||+|||+ ||+|++||++||++++++.++++++ + +|.|..+
T Consensus 3 mi~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~~~--~---------------------~i~s~~~------ 53 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS--Y---------------------RIYSDMF------ 53 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS--C---------------------EEEETTS------
T ss_pred eEEEeeCceEEEeccceEecCCCEEEEEEccccEEEEEEeCCc--E---------------------EEecCCC------
Confidence 46789999999999999 7889999999999999999998753 2 3333211
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHH---hCCCCCCCEEEEEEeCCCCC---CCCChH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTE---LGVRFEDSISMLVSSAVPEG---KGVSSS 649 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~---~g~~~~~g~~i~i~s~iP~g---~GLgSS 649 (838)
...++ + .++..| +|+++++..+.+. .|... .||++.+.|+||.| +|||||
T Consensus 54 ---~~~~~----------~---------~~~~~~-~~v~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~g~k~GLgSS 109 (337)
T 2pg9_A 54 ---DFAVD----------L---------RPNPDY-SLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSS 109 (337)
T ss_dssp ---SSCBC----------S---------SCCTTT-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEETTEECSSCHH
T ss_pred ---Cceee----------e---------cCCCCc-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEccCCCCCCCccccHH
Confidence 00110 0 123467 8999998876543 35554 79999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEec------------------
Q 003222 650 ASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ------------------ 711 (838)
Q Consensus 650 AA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~------------------ 711 (838)
||++||++.|++.++++++++.+++++|+.+| .+.|.+||.|||+++++||......+++.
T Consensus 110 aa~~va~~~al~~~~~~~l~~~~l~~la~~~E-~~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (337)
T 2pg9_A 110 GSVVVLVVKALLALYNLSVDQNLLFKLTSAVL-LKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERD 188 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-HHhCCCCCHHHHHHHHhCCEEEEecCChHHhhhhhcccchhhhcccc
Confidence 99999999999999999999999999999999 55777888899999999996322111322
Q ss_pred -CCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 712 -PAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 712 -~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
+..+ +++++|.++.+++++|++++++
T Consensus 189 ~~~~~-~~l~~~~~~~lvl~~~~~~~~T 215 (337)
T 2pg9_A 189 WGFSI-SQVKPTLECDFLVGWTKEVAVS 215 (337)
T ss_dssp CCCEE-EECCCCSCCEEEEEECCCCCCH
T ss_pred cccce-eeecCCCCceEEEEECCCccch
Confidence 1223 5677777899999999999875
No 11
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.95 E-value=6.4e-26 Score=257.35 Aligned_cols=347 Identities=16% Similarity=0.139 Sum_probs=210.1
Q ss_pred CCCCceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccC--CCcccccccccC
Q 003222 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLD--CGAVQADALTVD 87 (838)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~ 87 (838)
+.+|+.++|+++ +.++.||++|+++||++|+++||+|+|++.... ...+...++.+.+...+ .+.........+
T Consensus 7 ~~~m~~~~Il~~-~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
T 2iya_A 7 SASVTPRHISFF-NIPGHGHVNPSLGIVQELVARGHRVSYAITDEF---AAQVKAAGATPVVYDSILPKESNPEESWPED 82 (424)
T ss_dssp ----CCCEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGG---HHHHHHHTCEEEECCCCSCCTTCTTCCCCSS
T ss_pred cCCcccceEEEE-eCCCCcccchHHHHHHHHHHCCCeEEEEeCHHH---HHHHHhCCCEEEecCccccccccchhhcchh
Confidence 445777788774 677899999999999999999999999987531 11111112333332111 010000000111
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCc-----hhHHHH----hhh
Q 003222 88 RLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-----WDFIYA----EYV 157 (838)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~-----~~~i~~----~~~ 157 (838)
....+..+.. .......+..+++++.+||+||+|. .+++..+|+.+|||.+.+.... |..... .+.
T Consensus 83 ~~~~~~~~~~----~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 158 (424)
T 2iya_A 83 QESAMGLFLD----EAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTA 158 (424)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCCC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEeccccccccccccccccccccc
Confidence 1111111111 1223445667788899999999997 5678889999999999875322 211000 000
Q ss_pred --------h-hcc---------cchHHHHH---HHHhhcc----------ccceEEe-cCCCCCCC--CC-CceeecCcc
Q 003222 158 --------M-AAG---------HHHRSIVW---QIAEDYS----------HCEFLIR-LPGYCPMP--AF-RDVIDVPLV 202 (838)
Q Consensus 158 --------~-~~~---------~~~~~i~~---~l~~~y~----------~~d~ll~-~~~~~~~p--~~-~~v~~ip~~ 202 (838)
+ ..+ ........ .....+. .++..+. .+.....+ .+ ++++.+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~vGp~ 238 (424)
T 2iya_A 159 DRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPT 238 (424)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTGGGCCTTEEECCCC
T ss_pred ccccccccccccccchhhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCccCCCCCEEEeCCC
Confidence 0 000 00011111 1111110 1222222 22211111 11 245667764
Q ss_pred cccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEE-EEeCCCCC-----CCCCCeEECCCCC
Q 003222 203 VRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKC-LVCGASDS-----QLPPNFIKLPKDA 271 (838)
Q Consensus 203 ~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~-vv~G~~~~-----~lp~nv~~~~~~~ 271 (838)
... +.+..+++...+++++||+++||.+.. . .+++.+...++.+ +++|.... .+|+|+++.+|.+
T Consensus 239 ~~~----~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~ 314 (424)
T 2iya_A 239 YGD----RSHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVP 314 (424)
T ss_dssp CCC----CGGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSCGGGGCSCCTTEEEESSCC
T ss_pred CCC----cccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCChHHhccCCCCeEEecCCC
Confidence 321 011112333234678999999998742 2 2334454556765 45676432 2688999988776
Q ss_pred CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 272 ~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
.+ ++|++||+||||||+||++|++++|+|+|++| .+.||..|++++++.|+|+.+..++++++.+.++|+++++++.
T Consensus 315 ~~-~~l~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 391 (424)
T 2iya_A 315 QL-DILTKASAFITHAGMGSTMEALSNAVPMVAVP--QIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPG 391 (424)
T ss_dssp HH-HHHTTCSEEEECCCHHHHHHHHHTTCCEEECC--CSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred HH-HHHhhCCEEEECCchhHHHHHHHcCCCEEEec--CccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHH
Confidence 55 89999999999999999999999999999999 5679999999999999999998888888999999999998763
Q ss_pred Ccc---------CCCCHHHHHHHHHHHHh
Q 003222 352 CYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 352 ~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
... ...+|..++++.|++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 392 VAERLAAVRQEIREAGGARAAADILEGIL 420 (424)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 211 34678888888888764
No 12
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.94 E-value=4.3e-27 Score=264.94 Aligned_cols=210 Identities=19% Similarity=0.206 Sum_probs=147.6
Q ss_pred eEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 003222 497 IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (838)
+++++|||||+|+|||+||+||.||++||++++++.+++++++++++.+.+ .. ..
T Consensus 5 ~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~-----------~~-~~------------- 59 (395)
T 1kvk_A 5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPN-----------VG-IK------------- 59 (395)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETT-----------TT-EE-------------
T ss_pred cEEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCCCeEEEEcCC-----------CC-ce-------------
Confidence 578999999999999999999999999999999999999988766554221 00 00
Q ss_pred ceeccCCccccC----CCC-----cchhhhhcccCCCCCCChhHHH--HH---HHHHHHHHhCCC-CCCCEEEEEEeCCC
Q 003222 577 TFDMDLSDFMDE----GKP-----MSYEKAKKYFDTNPSQKWAAYV--AG---TILVLMTELGVR-FEDSISMLVSSAVP 641 (838)
Q Consensus 577 ~~~~~l~~~~~~----~~p-----~~~~~~~~~~~~~~~~~w~~y~--~g---~i~~~~~~~g~~-~~~g~~i~i~s~iP 641 (838)
++++++++... ++| +..+.....-.-....+|.+|+ ++ ++..+.+..+.. ...|+++.+.++||
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP 138 (395)
T 1kvk_A 60 -QVWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELP 138 (395)
T ss_dssp -EEEEHHHHHTSCC----------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSC
T ss_pred -EEEEhHhhhhhhcccccccccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCC
Confidence 11222111000 000 0000000000000124799994 34 333333233431 12699999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEE
Q 003222 642 EGKGVSSSASVEVASMSAIAAAHGL-----NIH-------P---RDLALLCQKVENHIVGAPCGVMDQMASACGEANKLL 706 (838)
Q Consensus 642 ~g~GLgSSAA~~va~~~al~~l~~~-----~l~-------~---~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l 706 (838)
.|+|||||||++||++.|++.++|. +++ + .+++++|+.+|+.++|.|||+ ||+++++||. +
T Consensus 139 ~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg~---~ 214 (395)
T 1kvk_A 139 PGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGGA---L 214 (395)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCSE---E
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcce---E
Confidence 9999999999999999999999999 788 7 566667899999999999997 9999999984 4
Q ss_pred EEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 707 AMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 707 ~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
++ ++..+ ++++++.++.++|++|++++++.
T Consensus 215 ~~--~~~~~-~~l~~~~~~~~vl~~~~~~~~T~ 244 (395)
T 1kvk_A 215 RY--QQGKM-SSLKRLPALQILLTNTKVPRSTK 244 (395)
T ss_dssp EE--SSSCE-EECSCCCCEEEEEEECCCCCCHH
T ss_pred EE--cCCCc-eeccCCCCcEEEEEECCCCCchH
Confidence 43 45544 67776678999999999999863
No 13
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.94 E-value=9.7e-26 Score=254.73 Aligned_cols=345 Identities=14% Similarity=0.106 Sum_probs=207.5
Q ss_pred CCCCceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccc--cccccC
Q 003222 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA--DALTVD 87 (838)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~--~~~~~~ 87 (838)
++.|. +|+|+ +..|.||++|+++||++|+++||+|+|++... +...+...++.+.....+...... ......
T Consensus 17 ~~~m~--rIl~~-~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
T 3rsc_A 17 GRHMA--HLLIV-NVASHGLILPTLTVVTELVRRGHRVSYVTAGG---FAEPVRAAGATVVPYQSEIIDADAAEVFGSDD 90 (415)
T ss_dssp --CCC--EEEEE-CCSCHHHHGGGHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCEEEECCCSTTTCCHHHHHHSSS
T ss_pred cccCC--EEEEE-eCCCccccccHHHHHHHHHHCCCEEEEEeCHH---HHHHHHhcCCEEEeccccccccccchhhcccc
Confidence 55574 55544 45689999999999999999999999998642 122221123344332111110000 000001
Q ss_pred hHHHHHH-HHHHhhccHHHHHHHHHHHHhcCCCcEEEEC-C-CchHHHHHHHhCCcEEEEecCc-----hhH---HHHhh
Q 003222 88 RLASLEK-YSETAVAPRKSILKDEVEWLNSIKADLVVSD-V-VPVACRAAADAGIRSVCVTNFS-----WDF---IYAEY 156 (838)
Q Consensus 88 ~~~~l~~-~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~-~~~~~~aA~~lgIP~V~is~~~-----~~~---i~~~~ 156 (838)
....+.. +.. .....+.+..+++++++||+||+| + .+++..+|+.+|||++.+.... |.. ....+
T Consensus 91 ~~~~~~~~~~~----~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (415)
T 3rsc_A 91 LGVRPHLMYLR----ENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLA 166 (415)
T ss_dssp SCHHHHHHHHH----HHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCcccccccccccc
Confidence 1111111 111 122344566788999999999999 4 6677888999999998875221 211 00100
Q ss_pred hhhcccchHHH---HHHHHhhccc-----------cceEE-ecCCCCCCC--CC-CceeecCcccccCCcChHHHHHHhC
Q 003222 157 VMAAGHHHRSI---VWQIAEDYSH-----------CEFLI-RLPGYCPMP--AF-RDVIDVPLVVRRLHKSRKEVRKELG 218 (838)
Q Consensus 157 ~~~~~~~~~~i---~~~l~~~y~~-----------~d~ll-~~~~~~~~p--~~-~~v~~ip~~~~~~~~~~~~~r~~l~ 218 (838)
....+.....+ ...+...+.. .+..+ ..+.....+ .+ .++..+|+..... .+..++..
T Consensus 167 ~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~----~~~~~~~~ 242 (415)
T 3rsc_A 167 GTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDR----RFLGEWTR 242 (415)
T ss_dssp TCCCGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGCCTTEEECCCCCCCC----GGGCCCCC
T ss_pred ccCChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccCCCceEEeCCCCCCc----ccCcCccc
Confidence 00000001111 1111112211 12222 222222111 01 1345565433211 11112222
Q ss_pred CCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecC
Q 003222 219 IEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKI 287 (838)
Q Consensus 219 ~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G~~~~-----~lp~nv~~~~~~~~~pdlLa~adl~It~g 287 (838)
..+++++||+++||.... . .+++.+...++.+++ +|.... .+++|+++.+|.+.+ ++|++||+||+|+
T Consensus 243 ~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~l~~~~~~v~~~~~~~~~-~ll~~ad~~v~~~ 321 (415)
T 3rsc_A 243 PADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDPAALGDLPPNVEAHRWVPHV-KVLEQATVCVTHG 321 (415)
T ss_dssp CSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSCGGGGCCCCTTEEEESCCCHH-HHHHHEEEEEESC
T ss_pred cCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCChHHhcCCCCcEEEEecCCHH-HHHhhCCEEEECC
Confidence 245788999999998653 1 233344444476655 675422 268899998887655 8999999999999
Q ss_pred ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCC
Q 003222 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGIN 358 (838)
Q Consensus 288 G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ 358 (838)
|++|++|++++|+|+|++| ...||..|++++++.|+|+.+...+++++.+.++|.++++++.... ...+
T Consensus 322 G~~t~~Ea~~~G~P~v~~p--~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 399 (415)
T 3rsc_A 322 GMGTLMEALYWGRPLVVVP--QSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRRAG 399 (415)
T ss_dssp CHHHHHHHHHTTCCEEECC--CSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHhCCCEEEeC--CcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998 5789999999999999999999888889999999999998763211 3467
Q ss_pred HHHHHHHHHHHHh
Q 003222 359 GGEVAAHILQETA 371 (838)
Q Consensus 359 g~~~~a~~i~~~~ 371 (838)
|++++++.|++++
T Consensus 400 ~~~~~~~~i~~~~ 412 (415)
T 3rsc_A 400 GAARAADAVEAYL 412 (415)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 14
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.94 E-value=3e-25 Score=248.96 Aligned_cols=343 Identities=18% Similarity=0.116 Sum_probs=207.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCccc--ccccccChHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ--ADALTVDRLASLE 93 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~l~ 93 (838)
++|+|++ ..+.||++|+++||++|+++||+|+|+++.. +...+...++.+.....+..... ...........+.
T Consensus 5 ~~il~~~-~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T 3ia7_A 5 RHILFAN-VQGHGHVYPSLGLVSELARRGHRITYVTTPL---FADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLH 80 (402)
T ss_dssp CEEEEEC-CSSHHHHHHHHHHHHHHHHTTCEEEEEECHH---HHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHH
T ss_pred CEEEEEe-CCCCcccccHHHHHHHHHhCCCEEEEEcCHH---HHHHHHHcCCEEEecccccccccccccccccchHHHHH
Confidence 4666654 5689999999999999999999999998642 11112112333433211111000 0001111111121
Q ss_pred H-HHHHhhccHHHHHHHHHHHHhcCCCcEEEEC-C-CchHHHHHHHhCCcEEEEecCch-----hH--HHHhhhhhccc-
Q 003222 94 K-YSETAVAPRKSILKDEVEWLNSIKADLVVSD-V-VPVACRAAADAGIRSVCVTNFSW-----DF--IYAEYVMAAGH- 162 (838)
Q Consensus 94 ~-~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~-~~~~~~aA~~lgIP~V~is~~~~-----~~--i~~~~~~~~~~- 162 (838)
. +.. .....+.+..+++++++||+||+| + .+++..+|+.+|||++.+....| .. ...........
T Consensus 81 ~~~~~----~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
T 3ia7_A 81 LVYVR----ENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPA 156 (402)
T ss_dssp HHHHH----HHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGG
T ss_pred HHHHH----HHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChh
Confidence 1 111 122345566788899999999999 4 66788889999999988753221 11 00000000000
Q ss_pred chHHH---HHHHHhhccc-----------cceEE-ecCCCCCCC--C-CCceeecCcccccCCcChHHHHHHhCCCCCCc
Q 003222 163 HHRSI---VWQIAEDYSH-----------CEFLI-RLPGYCPMP--A-FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVK 224 (838)
Q Consensus 163 ~~~~i---~~~l~~~y~~-----------~d~ll-~~~~~~~~p--~-~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~ 224 (838)
..... ...+...+.. .+..+ .++.....+ . ..++..+|+.... +.+...+....++++
T Consensus 157 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~----~~~~~~~~~~~~~~~ 232 (402)
T 3ia7_A 157 DVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPTLTG----RDGQPGWQPPRPDAP 232 (402)
T ss_dssp GSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTTEEECCCCCCC--------CCCCCSSTTCC
T ss_pred hHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCCCCeEEeCCCCCC----cccCCCCcccCCCCC
Confidence 00111 1111111111 02222 122211111 0 1234555543221 111122222245788
Q ss_pred EEEEEcCCCCch-h----hhHHhhCCCCcEEE-EeCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHH
Q 003222 225 LLILNFGGQPAG-W----KLKEEYLPSGWKCL-VCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVS 293 (838)
Q Consensus 225 ~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~v-v~G~~~~-----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~ 293 (838)
+||+++||.... . .+++.+...++.++ ++|.... .+++|+++.+|.+.+ ++|++||+||+|+|++|++
T Consensus 233 ~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~-~ll~~ad~~v~~~G~~t~~ 311 (402)
T 3ia7_A 233 VLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLDPAVLGPLPPNVEAHQWIPFH-SVLAHARACLTHGTTGAVL 311 (402)
T ss_dssp EEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSCGGGGCSCCTTEEEESCCCHH-HHHTTEEEEEECCCHHHHH
T ss_pred EEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCChhhhCCCCCcEEEecCCCHH-HHHhhCCEEEECCCHHHHH
Confidence 999999998753 1 23334444446554 4675422 268899999988766 9999999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHH
Q 003222 294 EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAA 364 (838)
Q Consensus 294 Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a 364 (838)
|++++|+|+|++|.+ ..||..|++.+++.|+|+.+..++++++.+.++|.++++++.... ....|+++++
T Consensus 312 Ea~~~G~P~v~~p~~-~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (402)
T 3ia7_A 312 EAFAAGVPLVLVPHF-ATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDILSSGGPARAA 390 (402)
T ss_dssp HHHHTTCCEEECGGG-CGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHhCCCEEEeCCC-cccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhCChHHHHH
Confidence 999999999999931 689999999999999999999888889999999999998763211 3567888888
Q ss_pred HHHHHHhc
Q 003222 365 HILQETAI 372 (838)
Q Consensus 365 ~~i~~~~~ 372 (838)
+.|++++.
T Consensus 391 ~~i~~~~~ 398 (402)
T 3ia7_A 391 DEVEAYLG 398 (402)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888753
No 15
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.93 E-value=9.9e-25 Score=247.09 Aligned_cols=344 Identities=10% Similarity=0.016 Sum_probs=200.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCC-CcccccccccChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC-GAVQADALTVDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~l~~ 94 (838)
|+|+++ ++.+.||++|+++||++|+++||+|+|++... +...+...++.+....... ..... ........
T Consensus 1 M~Il~~-~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~---~~~~v~~~g~~~~~i~~~~~~~~~~--~~~~~~~~--- 71 (415)
T 1iir_A 1 MRVLLA-TCGSRGDTEPLVALAVRVRDLGADVRMCAPPD---CAERLAEVGVPHVPVGPSARAPIQR--AKPLTAED--- 71 (415)
T ss_dssp CEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCCEEECCC-------C--CSCCCHHH---
T ss_pred CeEEEE-cCCCchhHHHHHHHHHHHHHCCCeEEEEcCHH---HHHHHHHcCCeeeeCCCCHHHHhhc--ccccchHH---
Confidence 367665 67789999999999999999999999998753 1121211223333321110 00000 00011111
Q ss_pred HHHHhhccHHHHHHHH-HHHHh-cCCCcEEEECC--Cch--HHHHHHHhCCcEEEEecCc-hhH------------H---
Q 003222 95 YSETAVAPRKSILKDE-VEWLN-SIKADLVVSDV--VPV--ACRAAADAGIRSVCVTNFS-WDF------------I--- 152 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~-~~~L~-~~kPDlVVsD~--~~~--~~~aA~~lgIP~V~is~~~-~~~------------i--- 152 (838)
+..++. ...... .++++ ..+||+||+|. .++ +..+|+.+|||++.+.... +.. .
T Consensus 72 ~~~~~~----~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~p~~~~~~~~~~~ 147 (415)
T 1iir_A 72 VRRFTT----EAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQD 147 (415)
T ss_dssp HHHHHH----HHHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC--------
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCcccCCccCCccccch
Confidence 111110 111222 22222 67999999996 556 7788999999999885332 100 0
Q ss_pred -HHhhhhhc-cc-----chHHHHHHHHhhcccc------------ceEEecCCCC---CCCCCCceeecCccccc-CCcC
Q 003222 153 -YAEYVMAA-GH-----HHRSIVWQIAEDYSHC------------EFLIRLPGYC---PMPAFRDVIDVPLVVRR-LHKS 209 (838)
Q Consensus 153 -~~~~~~~~-~~-----~~~~i~~~l~~~y~~~------------d~ll~~~~~~---~~p~~~~v~~ip~~~~~-~~~~ 209 (838)
........ .. .+....+.+...+... -.+...++.. +.+.. ++..+|+.... ....
T Consensus 148 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~vG~~~~~~~~~~ 226 (415)
T 1iir_A 148 TIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPTDL-DAVQTGAWILPDERPL 226 (415)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCCCSS-CCEECCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCCCEEEeeChhhcCCCcccC-CeEeeCCCccCcccCC
Confidence 00000000 00 0000011111111100 0122222222 11222 56677775543 2234
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-ch---hhhHHhhCCCCcEEE-EeCCCCC---CCCCCeEECCCCCCHHHHHhhcC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQP-AG---WKLKEEYLPSGWKCL-VCGASDS---QLPPNFIKLPKDAYTPDFMAASD 281 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~-~~---~~ll~~l~~~~~~~v-v~G~~~~---~lp~nv~~~~~~~~~pdlLa~ad 281 (838)
+.++.++++ .++++||+++||.+ .. ..+++.+...++.++ ++|.... .+++|+++.+|.+. .++|++||
T Consensus 227 ~~~~~~~l~--~~~~~v~v~~Gs~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~~~~~~v~~~~~~~~-~~~l~~~d 303 (415)
T 1iir_A 227 SPELAAFLD--AGPPPVYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNH-QVLFGRVA 303 (415)
T ss_dssp CHHHHHHHH--TSSCCEEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCCH-HHHGGGSS
T ss_pred CHHHHHHHh--hCCCeEEEeCCCCCCcHHHHHHHHHHHHHCCCeEEEEeCCCcccccCCCCCEEEeCcCCh-HHHHhhCC
Confidence 567777765 34578999999985 32 123334433344444 4475432 25789999887653 48999999
Q ss_pred EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc-------
Q 003222 282 CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------- 354 (838)
Q Consensus 282 l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~------- 354 (838)
+||||||+||++|++++|+|+|++| .+.||..||+++++.|+|+.++..+++++.+.++|+++ +++....
T Consensus 304 ~~v~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~~ 380 (415)
T 1iir_A 304 AVIHHGGAGTTHVAARAGAPQILLP--QMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARATAVAG 380 (415)
T ss_dssp EEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHHHH
T ss_pred EEEeCCChhHHHHHHHcCCCEEECC--CCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHHHH
Confidence 9999999999999999999999999 57899999999999999999988888889999999999 7653211
Q ss_pred --CCCCHHHHHHHHHHHHhccCCCccCCCchhHhh
Q 003222 355 --GGINGGEVAAHILQETAIGKNYASDKLSGARRL 387 (838)
Q Consensus 355 --~~~~g~~~~a~~i~~~~~~~~~~~~r~~ga~~L 387 (838)
...+|+++++++|++++ +++|+.||
T Consensus 381 ~~~~~~~~~~~~~~i~~~~--------~~~~~~~~ 407 (415)
T 1iir_A 381 TIRTDGAAVAARLLLDAVS--------REKPTVSA 407 (415)
T ss_dssp HSCSCHHHHHHHHHHHHHH--------TC------
T ss_pred HHhhcChHHHHHHHHHHHH--------hcccHHHH
Confidence 46788999999998875 34566666
No 16
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.93 E-value=6.7e-25 Score=247.80 Aligned_cols=343 Identities=13% Similarity=0.063 Sum_probs=200.5
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccc-cc-cccChHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA-DA-LTVDRLASLE 93 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~-~~-~~~~~~~~l~ 93 (838)
|+|++++ ....||+.|+++||++|+++||+|+|+++.. +...+...++.+.+...+...... .. ........+
T Consensus 1 MrIli~~-~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~---~~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 75 (404)
T 3h4t_A 1 MGVLITG-CGSRGDTEPLVALAARLRELGADARMCLPPD---YVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVV- 75 (404)
T ss_dssp -CEEEEE-ESSHHHHHHHHHHHHHHHHTTCCEEEEECGG---GHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGGH-
T ss_pred CeEEEEe-CCCCccHHHHHHHHHHHHHCCCeEEEEeCHH---HHHHHHHcCCceeecCCCHHHHhccccCCHHHHHHHH-
Confidence 4566554 3457999999999999999999999998743 222221122333332111110000 00 000000111
Q ss_pred HHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCC-chH---HHHHHHhCCcEEEEecCchhHHHHhhhh--h-----ccc
Q 003222 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVV-PVA---CRAAADAGIRSVCVTNFSWDFIYAEYVM--A-----AGH 162 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~-~~~---~~aA~~lgIP~V~is~~~~~~i~~~~~~--~-----~~~ 162 (838)
.. ..........+.+ .+||+||+|.. +.+ ..+|+.+|||++.+....|......+.. . ...
T Consensus 76 --~~----~~~~~~~~l~~~~--~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~~~~~~~~~~~~ 147 (404)
T 3h4t_A 76 --TE----VVAEWFDKVPAAI--EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADR 147 (404)
T ss_dssp --HH----HHHHHHHHHHHHH--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHH
T ss_pred --HH----HHHHHHHHHHHHh--cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHHHHHHHHHHHHH
Confidence 11 1111222223333 37999998853 333 6788999999998754433100000000 0 000
Q ss_pred chHHHHHHHHhhccc-----------cc-eEEecCCCC-CCCC-CCceeecCcccc-cCCcChHHHHHHhCCCCCCcEEE
Q 003222 163 HHRSIVWQIAEDYSH-----------CE-FLIRLPGYC-PMPA-FRDVIDVPLVVR-RLHKSRKEVRKELGIEDDVKLLI 227 (838)
Q Consensus 163 ~~~~i~~~l~~~y~~-----------~d-~ll~~~~~~-~~p~-~~~v~~ip~~~~-~~~~~~~~~r~~l~~~~~~~~Vl 227 (838)
.+....+.....+.- .+ .++...+.. +.+. ..++..+|.... .....+++++++++ +++++||
T Consensus 148 ~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p~~~~~~~~~~~G~~~~~~~~~~~~~l~~~l~--~~~~~Vl 225 (404)
T 3h4t_A 148 LFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDQRPLSAELEGFLR--AGSPPVY 225 (404)
T ss_dssp HHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCCCHHHHHHHH--TSSCCEE
T ss_pred HhHHHHHHHHHHcCCCCCcchhhccccCCeEEeeCcceeCCCCCCCCeEEeCccccCCCCCCCHHHHHHHh--cCCCeEE
Confidence 001111111111110 00 111111111 1111 123444554332 23445677888775 3678999
Q ss_pred EEcCCCCch----hhhHHhhCCCCcEEE-EeCCCCC---CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcC
Q 003222 228 LNFGGQPAG----WKLKEEYLPSGWKCL-VCGASDS---QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (838)
Q Consensus 228 vs~Gs~~~~----~~ll~~l~~~~~~~v-v~G~~~~---~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~G 299 (838)
|++||.+.. ..+++.+...++.++ .+|.... ..++|+++.+|.+ +.++|++||+||||||+||++|++++|
T Consensus 226 v~~Gs~~~~~~~~~~~~~al~~~~~~vv~~~g~~~~~~~~~~~~v~~~~~~~-~~~ll~~~d~~v~~gG~~t~~Eal~~G 304 (404)
T 3h4t_A 226 VGFGSGPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVN-HQVLFGRVAAVVHHGGAGTTTAVTRAG 304 (404)
T ss_dssp ECCTTSCCCTTHHHHHHHHHHHTTCCEEEECTTTTCCCSSCCTTEEEESSCC-HHHHGGGSSEEEECCCHHHHHHHHHHT
T ss_pred EECCCCCCcHHHHHHHHHHHHhCCCEEEEEeCCcccccccCCCCEEEecCCC-HHHHHhhCcEEEECCcHHHHHHHHHcC
Confidence 999998732 233334433455444 4454332 2588999988765 468999999999999999999999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHH
Q 003222 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (838)
Q Consensus 300 vP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~ 370 (838)
+|+|++| .+.||+.|++++++.|+|+.+...+++++.+.++|.++++ +.... .. +|+++++++|+++
T Consensus 305 vP~v~~p--~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 380 (404)
T 3h4t_A 305 APQVVVP--QKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGTIRT-DGTTVAAKLLLEA 380 (404)
T ss_dssp CCEEECC--CSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTTCCC-CHHHHHHHHHHHH
T ss_pred CCEEEcC--CcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 9999999 6789999999999999999998888889999999999987 42211 34 9999999999999
Q ss_pred hccCCCcc
Q 003222 371 AIGKNYAS 378 (838)
Q Consensus 371 ~~~~~~~~ 378 (838)
+...++..
T Consensus 381 ~~~~~~~~ 388 (404)
T 3h4t_A 381 ISRQRSSV 388 (404)
T ss_dssp HHC-----
T ss_pred HhhCCCcc
Confidence 87654443
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.93 E-value=8.8e-25 Score=245.73 Aligned_cols=318 Identities=17% Similarity=0.117 Sum_probs=177.9
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCc---------ccccc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGA---------VQADA 83 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~---------~~~~~ 83 (838)
...|+|+|++ ..+.||++++++||++|+++||+|++++... +...+...++.+.....+... .....
T Consensus 13 ~~~MrIl~~~-~~~~gh~~~~~~La~~L~~~GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
T 4fzr_A 13 GSHMRILVIA-GCSEGFVMPLVPLSWALRAAGHEVLVAASEN---MGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTT 88 (398)
T ss_dssp --CCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEEEGG---GHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCC
T ss_pred CCceEEEEEc-CCCcchHHHHHHHHHHHHHCCCEEEEEcCHH---HHHHHHhCCCeeEecCCccchHhhhhhhccCcccc
Confidence 4457887765 4589999999999999999999999998632 111111112222222110000 00000
Q ss_pred cccChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEec-Cc-hhHHHHhhhhhc
Q 003222 84 LTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FS-WDFIYAEYVMAA 160 (838)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~-~~-~~~i~~~~~~~~ 160 (838)
........+......+.......+.+..+++++++||+||+|. .+++.++|+.+|||++.+.. +. +.......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~---- 164 (398)
T 4fzr_A 89 MPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKSAG---- 164 (398)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHHHHH----
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhhHHH----
Confidence 0011111121122221112233455667888999999999985 67788899999999988742 21 11111100
Q ss_pred ccchHHHHHHHHhhccc-----cceEEe-cCCCCCCCCCCc---eeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcC
Q 003222 161 GHHHRSIVWQIAEDYSH-----CEFLIR-LPGYCPMPAFRD---VIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFG 231 (838)
Q Consensus 161 ~~~~~~i~~~l~~~y~~-----~d~ll~-~~~~~~~p~~~~---v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G 231 (838)
..++.. ....|.. .+..+. .+.....+.... +..+|... .+.++.+++...+++++||+++|
T Consensus 165 ---~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~v~~G 235 (398)
T 4fzr_A 165 ---VGELAP-ELAELGLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNG-----RNDQVPSWVFEERKQPRLCLTFG 235 (398)
T ss_dssp ---HHHTHH-HHHTTTCSSCCCCSEEEECSCGGGC----CCCEECCCCCCCC-----SSCCCCHHHHSCCSSCEEECC--
T ss_pred ---HHHHHH-HHHHcCCCCCCCCCeEEEeCChhhCCCCCCCCCCeeeeCCCC-----CCCCCchhhhcCCCCCEEEEEcc
Confidence 011111 1122211 122221 111111110000 11111110 11112223333357789999999
Q ss_pred CCCc---------h----hhhHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHH
Q 003222 232 GQPA---------G----WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVS 293 (838)
Q Consensus 232 s~~~---------~----~~ll~~l~~~~~~~vv~-G~~~~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~ 293 (838)
+... . ..+++.+...++.+++. |.... .+++||++.+|.+ ++++|++||+||+|||++|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~-~~~ll~~ad~~v~~gG~~t~~ 314 (398)
T 4fzr_A 236 TRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFP-LSAIMPACDVVVHHGGHGTTL 314 (398)
T ss_dssp --------------CCSHHHHHHHGGGGTCEEEECCCC--------CCTTEEEESCCC-HHHHGGGCSEEEECCCHHHHH
T ss_pred CcccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcchhhhccCCCcEEEeCcCC-HHHHHhhCCEEEecCCHHHHH
Confidence 9842 1 22334444446666655 33221 2689999999874 789999999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 294 EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 294 Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
||+++|+|+|++| .+.||..|++++++.|+|+.+...+++++.+.++|.++++++
T Consensus 315 Ea~~~G~P~v~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~ 369 (398)
T 4fzr_A 315 TCLSEGVPQVSVP--VIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDS 369 (398)
T ss_dssp HHHHTTCCEEECC--CSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCT
T ss_pred HHHHhCCCEEecC--CchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCH
Confidence 9999999999998 578999999999999999999888888899999999999876
No 18
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.93 E-value=3.5e-24 Score=242.60 Aligned_cols=334 Identities=10% Similarity=0.017 Sum_probs=200.7
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCC-CcccccccccChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC-GAVQADALTVDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~l~~ 94 (838)
|+|+++ ++.+.||+.|+++||++|+++||+|+|++... +...+...++.+....... +.... .........+
T Consensus 1 MrIl~~-~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~---~~~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 73 (416)
T 1rrv_A 1 MRVLLS-VCGTRGDVEIGVALADRLKALGVQTRMCAPPA---AEERLAEVGVPHVPVGLPQHMMLQE-GMPPPPPEEE-- 73 (416)
T ss_dssp CEEEEE-EESCHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHHTCCEEECSCCGGGCCCT-TSCCCCHHHH--
T ss_pred CeEEEE-ecCCCccHHHHHHHHHHHHHCCCeEEEEeCHH---HHHHHHHcCCeeeecCCCHHHHHhh-ccccchhHHH--
Confidence 367666 56789999999999999999999999998753 1121111123333321110 11100 0000111011
Q ss_pred HHHHhhccHHHHHHHHHHHHh--cCCCcEEEECC--Cch--HHHHHHHhCCcEEEEecCc-hhHHHHhhhh------h-c
Q 003222 95 YSETAVAPRKSILKDEVEWLN--SIKADLVVSDV--VPV--ACRAAADAGIRSVCVTNFS-WDFIYAEYVM------A-A 160 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~--~~kPDlVVsD~--~~~--~~~aA~~lgIP~V~is~~~-~~~i~~~~~~------~-~ 160 (838)
..++. ....+..+.++ ..+||+||+|. .++ +..+|+.+|||.+.+.... +... .+.+ . .
T Consensus 74 -~~~~~----~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~--~~~p~~~~~~~~~ 146 (416)
T 1rrv_A 74 -QRLAA----MTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLAS--PHLPPAYDEPTTP 146 (416)
T ss_dssp -HHHHH----HHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCC--SSSCCCBCSCCCT
T ss_pred -HHHHH----HHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--cccCCCCCCCCCc
Confidence 11110 11122233333 67999999995 455 7888999999999874322 1100 0000 0 0
Q ss_pred ccc--------hH--------HHHHHHHhhccc------------cceEEecCCCCC--CCCCCceeecCccccc-CCcC
Q 003222 161 GHH--------HR--------SIVWQIAEDYSH------------CEFLIRLPGYCP--MPAFRDVIDVPLVVRR-LHKS 209 (838)
Q Consensus 161 ~~~--------~~--------~i~~~l~~~y~~------------~d~ll~~~~~~~--~p~~~~v~~ip~~~~~-~~~~ 209 (838)
+.. .+ ...+.+...+.. .-.++..+.... .+.. ++..+|+.... ....
T Consensus 147 ~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~vG~~~~~~~~~~ 225 (416)
T 1rrv_A 147 GVTDIRVLWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDV-DAVQTGAWLLSDERPL 225 (416)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSC-CCEECCCCCCCCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCCCeEEccCccccCCCCCC-CeeeECCCccCccCCC
Confidence 000 00 001111111110 001221222111 1111 55667765443 2223
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCc--hhh----hHHhhCCCCcEEE-EeCCCCC---CCCCCeEECCCCCCHHHHHhh
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPA--GWK----LKEEYLPSGWKCL-VCGASDS---QLPPNFIKLPKDAYTPDFMAA 279 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~----ll~~l~~~~~~~v-v~G~~~~---~lp~nv~~~~~~~~~pdlLa~ 279 (838)
+.++.++++ .++++|||++||.+. ..+ +++++...++.++ ++|.... .+|+|+++.+|.+ +.++|++
T Consensus 226 ~~~~~~~l~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~~~~~~v~~~~~~~-~~~ll~~ 302 (416)
T 1rrv_A 226 PPELEAFLA--AGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVN-FQALFRR 302 (416)
T ss_dssp CHHHHHHHH--SSSCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCC-HHHHGGG
T ss_pred CHHHHHHHh--cCCCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccccccCCCCCEEEeccCC-hHHHhcc
Confidence 566777764 245789999999874 222 3333333345444 4575432 2688999988875 6799999
Q ss_pred cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc-----
Q 003222 280 SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----- 354 (838)
Q Consensus 280 adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~----- 354 (838)
||+||||||+||++||+++|+|+|++| .+.||..|++++++.|+|+.+...+++++.+.++|+++ .++....
T Consensus 303 ~d~~v~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~ 379 (416)
T 1rrv_A 303 VAAVIHHGSAGTEHVATRAGVPQLVIP--RNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPETRARAEAV 379 (416)
T ss_dssp SSEEEECCCHHHHHHHHHHTCCEEECC--CSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHHHHHH
T ss_pred CCEEEecCChhHHHHHHHcCCCEEEcc--CCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHHHHHH
Confidence 999999999999999999999999999 57899999999999999999988788889999999998 7653111
Q ss_pred ----CCCCHHHHHHHHH-HHHh
Q 003222 355 ----GGINGGEVAAHIL-QETA 371 (838)
Q Consensus 355 ----~~~~g~~~~a~~i-~~~~ 371 (838)
...+|+ +++++| ++++
T Consensus 380 ~~~~~~~~~~-~~~~~i~e~~~ 400 (416)
T 1rrv_A 380 AGMVLTDGAA-AAADLVLAAVG 400 (416)
T ss_dssp TTTCCCCHHH-HHHHHHHHHHH
T ss_pred HHHHhhcCcH-HHHHHHHHHHh
Confidence 357788 888888 7764
No 19
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.93 E-value=1e-24 Score=249.04 Aligned_cols=346 Identities=15% Similarity=0.108 Sum_probs=204.7
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCC---Cccccc--c----
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC---GAVQAD--A---- 83 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~---g~~~~~--~---- 83 (838)
+..|+|+|+ ++.+.||+.|+++||++|+++||+|+|++... +...+...++.+....... +..... .
T Consensus 18 ~~~mrIl~~-~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~---~~~~v~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~ 93 (441)
T 2yjn_A 18 GSHMRVVFS-SMASKSHLFGLVPLAWAFRAAGHEVRVVASPA---LTEDITAAGLTAVPVGTDVDLVDFMTHAGHDIIDY 93 (441)
T ss_dssp -CCCEEEEE-CCSCHHHHTTTHHHHHHHHHTTCEEEEEECGG---GHHHHHTTTCCEEECSCCCCHHHHHHHTTHHHHHH
T ss_pred CCccEEEEE-cCCCcchHhHHHHHHHHHHHCCCeEEEEeCch---hHHHHHhCCCceeecCCccchHHHhhhhhcccccc
Confidence 334678776 67788999999999999999999999998743 2222222234444321111 110000 0
Q ss_pred ---cc-----cC--hHHHHHH----HHHHhhccH-HH-HHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEec
Q 003222 84 ---LT-----VD--RLASLEK----YSETAVAPR-KS-ILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 84 ---~~-----~~--~~~~l~~----~~~~~~~~~-~~-~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~ 146 (838)
.. .. ....+.. +...+.... .. .+.+..+.+++++||+||+|. .+++..+|+.+|||++.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~~ 173 (441)
T 2yjn_A 94 VRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLW 173 (441)
T ss_dssp HTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEECS
T ss_pred cccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEec
Confidence 00 00 0001101 111111000 01 455667778899999999996 67888999999999998832
Q ss_pred Cchh---HHHHhhhhhc---c-----cchHHHHHHHHhhccc---------cceEEe-cCCCCCCC-CCC--ceeecCcc
Q 003222 147 FSWD---FIYAEYVMAA---G-----HHHRSIVWQIAEDYSH---------CEFLIR-LPGYCPMP-AFR--DVIDVPLV 202 (838)
Q Consensus 147 ~~~~---~i~~~~~~~~---~-----~~~~~i~~~l~~~y~~---------~d~ll~-~~~~~~~p-~~~--~v~~ip~~ 202 (838)
.+. .....+.... + .............+.. .+..+. ++.....+ ..+ .+..+|.
T Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 251 (441)
T 2yjn_A 174 -GPDITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDY- 251 (441)
T ss_dssp -SCCHHHHHHHHHHHHGGGSCTTTCCCHHHHHHHHHHHHTTCCCCCGGGTSCSSEEECSCGGGSCCCCCCEEECCCCCC-
T ss_pred -CCCcchhhhhhhhhhccccccccccchHHHHHHHHHHHcCCCCCCccccCCCeEEEecCccccCCCCCCCCceeeeCC-
Confidence 211 1111110000 0 0011111222222211 111221 11111111 000 0111111
Q ss_pred cccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--------hhhHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCC
Q 003222 203 VRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--------WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPK 269 (838)
Q Consensus 203 ~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--------~~ll~~l~~~~~~~vv~-G~~~~----~lp~nv~~~~~ 269 (838)
..+.++.++++..+++++||+++||.+.. ..+++++...++.+++. |.... .+++||++.+|
T Consensus 252 -----~~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~ 326 (441)
T 2yjn_A 252 -----NGPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIPDNVRTVGF 326 (441)
T ss_dssp -----CSSCCCCGGGSSCCSSCEEEEEC----------CCSTTTTHHHHHTSSSEEEECCCTTTTSSCSSCCSSEEECCS
T ss_pred -----CCCcccchHhhcCCCCCEEEEECCCCcccccChHHHHHHHHHHHHcCCCEEEEEECCcchhhhccCCCCEEEecC
Confidence 01123345665445778999999998742 13344444446666654 43221 25789999888
Q ss_pred CCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 270 DAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 270 ~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
++. .++|++||+||+|||++|++|++++|+|+|++| .+.||..|++++++.|+|+.+...+++++.+.++|.+++++
T Consensus 327 ~~~-~~ll~~ad~~V~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 403 (441)
T 2yjn_A 327 VPM-HALLPTCAATVHHGGPGSWHTAAIHGVPQVILP--DGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDD 403 (441)
T ss_dssp CCH-HHHGGGCSEEEECCCHHHHHHHHHTTCCEEECC--CSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred CCH-HHHHhhCCEEEECCCHHHHHHHHHhCCCEEEeC--CcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcC
Confidence 764 689999999999999999999999999999999 57899999999999999999988888889999999999987
Q ss_pred CCCcc---------CCCCHHHHHHHHHHHHhc
Q 003222 350 KPCYE---------GGINGGEVAAHILQETAI 372 (838)
Q Consensus 350 ~~~~~---------~~~~g~~~~a~~i~~~~~ 372 (838)
+.... ...+|++++++.|++++.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 404 PAHRAGAARMRDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 63211 367888899999888764
No 20
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=99.92 E-value=1.7e-23 Score=238.35 Aligned_cols=342 Identities=12% Similarity=0.075 Sum_probs=205.9
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCC--CeEEEEeCCC--Ccccccc-cCCCceeeeeeccCCCcccccccccChH
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHVVTGAP--DFVFTSE-IQSPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~G--h~V~~v~~~~--~~~~~~~-i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
+.+|++ ++.++.||++|++.||+.|..+| +.|||++... ..+.... ...+.+.+... ..|+........+..
T Consensus 13 ~~hvv~-~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~i--pdglp~~~~~~~~~~ 89 (454)
T 3hbf_A 13 LLHVAV-LAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV--HDGLPKGYVSSGNPR 89 (454)
T ss_dssp CCEEEE-ECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEEC--CCCCCTTCCCCSCTT
T ss_pred CCEEEE-EcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCCceEEec--CCCCCCCccccCChH
Confidence 345544 57899999999999999999999 9999997631 1111111 00123555442 123221110111111
Q ss_pred HHHHHHHHHhhccHHHHHHHHH-HHHhc--CCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHH-------Hh-
Q 003222 90 ASLEKYSETAVAPRKSILKDEV-EWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIY-------AE- 155 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~-~~L~~--~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~-------~~- 155 (838)
..+..+.... ...+++.+ +++++ .+||+||+|+ .+|+..+|+.+|||.+.+...++. ..+ ..
T Consensus 90 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~ 165 (454)
T 3hbf_A 90 EPIFLFIKAM----QENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKT 165 (454)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhc
Confidence 1122222111 11122222 22332 5789999996 788999999999999887433211 000 00
Q ss_pred ------------hhhhccc--------c--------hHHHHHHHHhhccccceEEecCCCCC--------CCCCCceeec
Q 003222 156 ------------YVMAAGH--------H--------HRSIVWQIAEDYSHCEFLIRLPGYCP--------MPAFRDVIDV 199 (838)
Q Consensus 156 ------------~~~~~~~--------~--------~~~i~~~l~~~y~~~d~ll~~~~~~~--------~p~~~~v~~i 199 (838)
+++..+. . ...+.....+....++.++..++... .+.+++++.|
T Consensus 166 ~~~~~~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~~~v~~v 245 (454)
T 3hbf_A 166 GSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNV 245 (454)
T ss_dssp CHHHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTSSCEEEC
T ss_pred CCCccccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcCCCEEEE
Confidence 0111000 0 00111112223333444443222110 2334678889
Q ss_pred Cccccc-C---CcChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eCCCC-----CC----C
Q 003222 200 PLVVRR-L---HKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASD-----SQ----L 260 (838)
Q Consensus 200 p~~~~~-~---~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G~~~-----~~----l 260 (838)
||+... + ...+.++.+||+..+++++|||+|||.+.. . ++...+...++.+++ +|... +. .
T Consensus 246 GPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~~~~lp~~~~~~~ 325 (454)
T 3hbf_A 246 GPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERT 325 (454)
T ss_dssp CCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCHHHHSCTTHHHHT
T ss_pred CCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhcCCHhHHhhc
Confidence 986542 1 122456888998777889999999999862 1 233344334554443 45431 11 3
Q ss_pred CCCeEECCCCCCHHHHHhhcC--EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecCCCChh
Q 003222 261 PPNFIKLPKDAYTPDFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRRDLLTG 337 (838)
Q Consensus 261 p~nv~~~~~~~~~pdlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l~~~~~~~~ 337 (838)
++|+.+++|.+. .++|+|++ +||||||+||++|++++|||+|++| .+.||+.||+++++ .|+|+.+...+++.+
T Consensus 326 ~~~~~vv~w~Pq-~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P--~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~ 402 (454)
T 3hbf_A 326 KTKGKIVAWAPQ-VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRP--FFGDQGLNTILTESVLEIGVGVDNGVLTKE 402 (454)
T ss_dssp TTTEEEESSCCH-HHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHTTSCSEEECGGGSCCHH
T ss_pred CCceEEEeeCCH-HHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCc--ccccHHHHHHHHHHhhCeeEEecCCCCCHH
Confidence 568888654332 28999988 9999999999999999999999999 68999999999999 499999988889999
Q ss_pred hHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 338 HWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 338 ~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
.+.++|+++++++ .....++.|..|.+.+
T Consensus 403 ~l~~av~~ll~~~-----~~~~~r~~a~~l~~~~ 431 (454)
T 3hbf_A 403 SIKKALELTMSSE-----KGGIMRQKIVKLKESA 431 (454)
T ss_dssp HHHHHHHHHHSSH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-----hHHHHHHHHHHHHHHH
Confidence 9999999999643 1123455666666654
No 21
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.92 E-value=2.9e-24 Score=241.58 Aligned_cols=330 Identities=14% Similarity=0.093 Sum_probs=194.1
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCccc---cc----------
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ---AD---------- 82 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~---~~---------- 82 (838)
|+|+|++. .+.||++++++||++|+++||+|+|++. . +...+...++.+.....+..+.. ..
T Consensus 21 MrIl~~~~-~~~Ghv~~~~~La~~L~~~GheV~v~~~-~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (398)
T 3oti_A 21 MRVLFVSS-PGIGHLFPLIQLAWGFRTAGHDVLIAVA-E---HADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAET 95 (398)
T ss_dssp CEEEEECC-SSHHHHGGGHHHHHHHHHTTCEEEEEES-S---CHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHHHHT
T ss_pred CEEEEEcC-CCcchHhHHHHHHHHHHHCCCEEEEecc-c---hHHHHHhCCCeeEecCCccCHHHHhhhcccCCcccccc
Confidence 67877654 5899999999999999999999999987 3 22222223344433211100000 00
Q ss_pred ---ccccChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEec-CchhHHHHhhh
Q 003222 83 ---ALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FSWDFIYAEYV 157 (838)
Q Consensus 83 ---~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~-~~~~~i~~~~~ 157 (838)
............+... ....+.+..+++++++||+||+|. .+.+.++|+.++||++.+.. +.....+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~ 171 (398)
T 3oti_A 96 VATRPAIDLEEWGVQIAAV----NRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSI 171 (398)
T ss_dssp GGGSCCCSGGGGHHHHHHH----HGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCCTTHHHHH
T ss_pred ccCChhhhHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCccchhhHH
Confidence 0000000001111111 122455667888999999999985 66688899999999987632 11000000000
Q ss_pred hhcccchHHHHHHHHhhccc----cceEEe-cCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCC
Q 003222 158 MAAGHHHRSIVWQIAEDYSH----CEFLIR-LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGG 232 (838)
Q Consensus 158 ~~~~~~~~~i~~~l~~~y~~----~d~ll~-~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs 232 (838)
. ..... ..+.|.. .+..+. .+.....+. .....|.... +...+....+++...+++++||+++|+
T Consensus 172 ~---~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~~G~ 241 (398)
T 3oti_A 172 A---SFLTD----LMDKHQVSLPEPVATIESFPPSLLLEA--EPEGWFMRWV-PYGGGAVLGDRLPPVPARPEVAITMGT 241 (398)
T ss_dssp H---TTCHH----HHHHTTCCCCCCSEEECSSCGGGGTTS--CCCSBCCCCC-CCCCCEECCSSCCCCCSSCEEEECCTT
T ss_pred H---HHHHH----HHHHcCCCCCCCCeEEEeCCHHHCCCC--CCCCCCcccc-CCCCCcCCchhhhcCCCCCEEEEEcCC
Confidence 0 00111 1122211 121221 111111110 0001111000 000111122334444578899999999
Q ss_pred CCc---h----hhhHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCC
Q 003222 233 QPA---G----WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKL 300 (838)
Q Consensus 233 ~~~---~----~~ll~~l~~~~~~~vv~-G~~~~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~Gv 300 (838)
... + ..+++.+...++.+++. |.... .+++||++.+|. .++++|++||+||+|||++|++||+++|+
T Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~~-~~~~ll~~ad~~v~~~G~~t~~Eal~~G~ 320 (398)
T 3oti_A 242 IELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWT-PLHTLLRTCTAVVHHGGGGTVMTAIDAGI 320 (398)
T ss_dssp THHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCGGGCSCCTTEEEESSC-CHHHHHTTCSEEEECCCHHHHHHHHHHTC
T ss_pred CccccCcHHHHHHHHHHHHcCCCEEEEEECCcChhhhccCCCcEEEEccC-CHHHHHhhCCEEEECCCHHHHHHHHHhCC
Confidence 843 1 12333444456766554 44322 268899999988 68899999999999999999999999999
Q ss_pred cEEEEeCCCCCChHHHH--HHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHH
Q 003222 301 PFVFVRRDYFNEEPFLR--NMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQE 369 (838)
Q Consensus 301 P~l~iP~~~~~EQ~~Na--~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~ 369 (838)
|+|++| .+.||..|+ +++++.|+|+.++..+++++.+. ++++++.... ....+++++++.|++
T Consensus 321 P~v~~p--~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (398)
T 3oti_A 321 PQLLAP--DPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVREEMVALPTPAETVRRIVE 394 (398)
T ss_dssp CEEECC--CTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CEEEcC--CCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999998 578999999 99999999999988777755554 6666653211 356778888888877
Q ss_pred Hh
Q 003222 370 TA 371 (838)
Q Consensus 370 ~~ 371 (838)
++
T Consensus 395 l~ 396 (398)
T 3oti_A 395 RI 396 (398)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 22
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=99.92 E-value=4.2e-23 Score=238.05 Aligned_cols=318 Identities=15% Similarity=0.115 Sum_probs=189.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHC-CCeEEEEeCCCCcccccccC------CCceeeeeeccCCCcccccccccCh
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISA-GHDVHVVTGAPDFVFTSEIQ------SPRLFIRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~-Gh~V~~v~~~~~~~~~~~i~------~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (838)
++|++ ++.++.||+.++++||++|+++ ||+|||++..... +...+. ..++.+..... +.........+.
T Consensus 7 ~~vl~-~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~-~~~~~~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~ 82 (480)
T 2vch_A 7 PHVAI-IPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGP-PSKAQRTVLDSLPSSISSVFLPP--VDLTDLSSSTRI 82 (480)
T ss_dssp CEEEE-ECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSS-CC-CHHHHHC-CCTTEEEEECCC--CCCTTSCTTCCH
T ss_pred cEEEE-ecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcc-hhhhhhhhccccCCCceEEEcCC--CCCCCCCCchhH
Confidence 34544 4778899999999999999998 9999999875321 111111 13455544311 111000000011
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHH------H
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIY------A 154 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~------~ 154 (838)
...+..... .......+++++ .+| |+||+|. .+++..+|+.+|||.+.+...... ..+ .
T Consensus 83 ---~~~~~~~~~----~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (480)
T 2vch_A 83 ---ESRISLTVT----RSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLD 155 (480)
T ss_dssp ---HHHHHHHHH----TTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHH----hhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHH
Confidence 111111111 111222333433 578 9999996 667888999999999887543311 000 0
Q ss_pred h-------------hhhhcc--------cch-H---HHHHH---HHhhccccceEEecCCCC-----------CCCCCCc
Q 003222 155 E-------------YVMAAG--------HHH-R---SIVWQ---IAEDYSHCEFLIRLPGYC-----------PMPAFRD 195 (838)
Q Consensus 155 ~-------------~~~~~~--------~~~-~---~i~~~---l~~~y~~~d~ll~~~~~~-----------~~p~~~~ 195 (838)
. ..+... ..+ + ..... ....+..+..++..++.. +.+..++
T Consensus 156 ~~~~~~~~~~~~~~~~Pg~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~~~ 235 (480)
T 2vch_A 156 ETVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPP 235 (480)
T ss_dssp HHCCSCGGGCSSCBCCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCC
T ss_pred hcCCCcccccCCcccCCCCCCCChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCCCc
Confidence 0 001000 000 0 11111 112222233232212211 1111357
Q ss_pred eeecCcccccC-----CcChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eCCCC-------
Q 003222 196 VIDVPLVVRRL-----HKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASD------- 257 (838)
Q Consensus 196 v~~ip~~~~~~-----~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G~~~------- 257 (838)
++.+|+..... ...+.++.+|++..+++++|||||||.... . ++..++...+..+++ ++...
T Consensus 236 v~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~ 315 (480)
T 2vch_A 236 VYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSY 315 (480)
T ss_dssp EEECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTT
T ss_pred EEEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccc
Confidence 88888865432 123457788887656789999999998742 2 333345445565543 34321
Q ss_pred ------C----CCCCCe--------EECCCCCCHH--HHHhhcC--EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHH
Q 003222 258 ------S----QLPPNF--------IKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPF 315 (838)
Q Consensus 258 ------~----~lp~nv--------~~~~~~~~~p--dlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~ 315 (838)
. .+|+|+ .++. +|+| ++|+|++ +||||||+||++|++++|||+|++| .+.||+.
T Consensus 316 ~~~~~~~~~~~~lp~~~~~~~~~~g~~v~--~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P--~~~DQ~~ 391 (480)
T 2vch_A 316 FDSHSQTDPLTFLPPGFLERTKKRGFVIP--FWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWP--LYAEQKM 391 (480)
T ss_dssp TCC--CSCGGGGSCTTHHHHTTTTEEEEE--SCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHH
T ss_pred cccccccchhhhcCHHHHHHhCCCeEEEe--CccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEecc--ccccchH
Confidence 1 268886 3332 3666 8998877 8999999999999999999999999 6899999
Q ss_pred HHHHH-HHcCcEEEEecC---CCChhhHHHHHHHHhh
Q 003222 316 LRNML-EFYQGGVEMIRR---DLLTGHWKPYLERAIS 348 (838)
Q Consensus 316 Na~~l-~~~G~g~~l~~~---~~~~~~l~~~l~~ll~ 348 (838)
||+++ ++.|+|+.+... .++.+.+.++|++++.
T Consensus 392 na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 392 NAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLME 428 (480)
T ss_dssp HHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCeEEEeecccCCccCHHHHHHHHHHHhc
Confidence 99997 799999999765 6889999999999996
No 23
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.91 E-value=1e-23 Score=236.26 Aligned_cols=339 Identities=12% Similarity=0.052 Sum_probs=197.1
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeee-ccCCCcc--------cc-cccc
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKV-LLDCGAV--------QA-DALT 85 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~-~~~~g~~--------~~-~~~~ 85 (838)
|+|+|++. .+.||+++++.|+++|+++||+|+|++... +...+...++.+... +.+.... .. ....
T Consensus 2 MrIl~~~~-~~~gh~~~~~~la~~L~~~GheV~v~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (391)
T 3tsa_A 2 MRVLVVPL-PYPTHLMAMVPLCWALQASGHEVLIAAPPE---LQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFG 77 (391)
T ss_dssp CEEEEECC-SCHHHHHTTHHHHHHHHHTTCEEEEEECHH---HHHHHHHBTCEEEEC--------------CCSCCGGGG
T ss_pred cEEEEEcC-CCcchhhhHHHHHHHHHHCCCEEEEecChh---hHHHHHhCCCceeeecCCccchhhhhhhcccccccccc
Confidence 67877654 489999999999999999999999998632 111111112222221 1110000 00 0000
Q ss_pred cChHHHHHH-HHHHhh---ccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchhHHHHhhhhhc
Q 003222 86 VDRLASLEK-YSETAV---APRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAA 160 (838)
Q Consensus 86 ~~~~~~l~~-~~~~~~---~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~ 160 (838)
......+.. +..... .....++.+..+++++++||+||+|. .+.+.++|+.+|||++.+...... ........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~-~~~~~~~~- 155 (391)
T 3tsa_A 78 QRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDP-TAGPFSDR- 155 (391)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCC-TTTHHHHH-
T ss_pred cccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCcc-ccccccch-
Confidence 000011111 111100 00111156668889999999999995 666788899999999887421100 00000000
Q ss_pred ccchHHHHHHHHhhccc-----cceEEe-cCCCCCCCC--C-CceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcC
Q 003222 161 GHHHRSIVWQIAEDYSH-----CEFLIR-LPGYCPMPA--F-RDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFG 231 (838)
Q Consensus 161 ~~~~~~i~~~l~~~y~~-----~d~ll~-~~~~~~~p~--~-~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G 231 (838)
...++...+ ..|.. .+..+. .+.....+. . ..+..+|.. .+....+++...+++++|++++|
T Consensus 156 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~vlv~~G 226 (391)
T 3tsa_A 156 --AHELLDPVC-RHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPYN------GSGAFPAWGAARTSARRVCICMG 226 (391)
T ss_dssp --HHHHHHHHH-HHTTSSSSCCCSEEEECSCGGGSCTTSCCCEECCCCCCC------CCEECCGGGSSCCSSEEEEEECC
T ss_pred --HHHHHHHHH-HHcCCCCCCCCceEEEecChhhcCCCCCccCCeeeecCC------CCcCCCchhhcCCCCCEEEEEcC
Confidence 011222222 22211 122222 121111110 0 001112110 11111234444457889999999
Q ss_pred CCCc---h-hhhHHhh---CC-CCcEEEEeCCCC-C----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHc
Q 003222 232 GQPA---G-WKLKEEY---LP-SGWKCLVCGASD-S----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298 (838)
Q Consensus 232 s~~~---~-~~ll~~l---~~-~~~~~vv~G~~~-~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~ 298 (838)
+... . ..++..+ .. +++.+++.+... . .+++|+++.+|.+ .+++|++||+||+|||++|++||+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~-~~~ll~~ad~~v~~~G~~t~~Ea~~~ 305 (391)
T 3tsa_A 227 RMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVP-LNLFLRTCELVICAGGSGTAFTATRL 305 (391)
T ss_dssp HHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGGGGGCTTCCTTEEECCSCC-GGGTGGGCSEEEECCCHHHHHHHHHT
T ss_pred CCCCcccchHHHHHHHHHhccCCCeEEEEEECCcchhhcccCCCCEEEeccCC-HHHHHhhCCEEEeCCCHHHHHHHHHh
Confidence 8843 1 2222221 22 367666654322 1 2578999988864 46899999999999999999999999
Q ss_pred CCcEEEEeCCCCCChHHHHHHHHHcCcEEEEec--CCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHH
Q 003222 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR--RDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHIL 367 (838)
Q Consensus 299 GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~--~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i 367 (838)
|+|+|++| .+.||..|++.+++.|+|+.+.. .+.+++.+.++|.++++++.... ....+++++++.|
T Consensus 306 G~P~v~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (391)
T 3tsa_A 306 GIPQLVLP--QYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTL 383 (391)
T ss_dssp TCCEEECC--CSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCCEEecC--CcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999998 57899999999999999999987 67788999999999998763211 3567788888888
Q ss_pred HHHhc
Q 003222 368 QETAI 372 (838)
Q Consensus 368 ~~~~~ 372 (838)
++++.
T Consensus 384 ~~~~~ 388 (391)
T 3tsa_A 384 ENTAA 388 (391)
T ss_dssp HHC--
T ss_pred HHHHh
Confidence 87643
No 24
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=99.91 E-value=2.4e-23 Score=238.54 Aligned_cols=343 Identities=13% Similarity=0.110 Sum_probs=196.9
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCCCeE--EEEeCCC--CcccccccC--CCceeeeeeccCCCcccccccccCh
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDV--HVVTGAP--DFVFTSEIQ--SPRLFIRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V--~~v~~~~--~~~~~~~i~--~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (838)
+.+|++ ++.++.||++|+++||+.|+++||.| +|++... ......... .+++.+... ..|+........+.
T Consensus 7 ~~hvv~-~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i--~~glp~~~~~~~~~ 83 (456)
T 2c1x_A 7 NPHVAV-LAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDI--SDGVPEGYVFAGRP 83 (456)
T ss_dssp CCEEEE-ECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEEC--CCCCCTTCCCCCCT
T ss_pred CCEEEE-EcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCceEEEeC--CCCCCCcccccCCh
Confidence 345544 57889999999999999999998765 6665521 001111010 123444432 11222110000011
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHh--cCCCcEEEECC-CchHHHHHHHhCCcEEEEecCch--h--HHH----H-h-
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLN--SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW--D--FIY----A-E- 155 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~--~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~--~--~i~----~-~- 155 (838)
...+..+...........+. ++++ ..+||+||+|. .+++..+|+.+|||.+.+..... . ..+ . .
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~---~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
T 2c1x_A 84 QEDIELFTRAAPESFRQGMV---MAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKI 160 (456)
T ss_dssp THHHHHHHHHHHHHHHHHHH---HHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH---HHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhcc
Confidence 11111121111001111222 2222 36899999996 67888899999999988854321 0 000 0 0
Q ss_pred --------------hhhhccc-----------------chHHHHHHHHhhccccceEEecCCCCC--------CCCCCce
Q 003222 156 --------------YVMAAGH-----------------HHRSIVWQIAEDYSHCEFLIRLPGYCP--------MPAFRDV 196 (838)
Q Consensus 156 --------------~~~~~~~-----------------~~~~i~~~l~~~y~~~d~ll~~~~~~~--------~p~~~~v 196 (838)
+.+..+. .+..+...+.+....++.++..++... .+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~pg~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~~~~ 240 (456)
T 2c1x_A 161 GVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTY 240 (456)
T ss_dssp CSSCCTTCTTCBCTTSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHSSCE
T ss_pred CCcccccccccccccCCCCCcccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcCCCE
Confidence 0110000 001111111122233343333222111 1123567
Q ss_pred eecCcccccC-Cc-C--hHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEE-EeCCCCC-CC-----
Q 003222 197 IDVPLVVRRL-HK-S--RKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCL-VCGASDS-QL----- 260 (838)
Q Consensus 197 ~~ip~~~~~~-~~-~--~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~v-v~G~~~~-~l----- 260 (838)
+.+||+.... .. . ..++.++++..+++++|||++||.+.. . ++...+...++.++ ++|.... .+
T Consensus 241 ~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~~ 320 (456)
T 2c1x_A 241 LNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFL 320 (456)
T ss_dssp EECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTHH
T ss_pred EEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHHH
Confidence 8888865421 11 1 124677887766789999999998752 2 23333433345444 4564321 12
Q ss_pred ---CCCeEECCCCCCHHHHHh--hcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCCC
Q 003222 261 ---PPNFIKLPKDAYTPDFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRDL 334 (838)
Q Consensus 261 ---p~nv~~~~~~~~~pdlLa--~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~-G~g~~l~~~~~ 334 (838)
++|+++.+|.+. .++|+ ++|+||||||+||++|++++|||+|++| .+.||+.||+++++. |+|+.+...++
T Consensus 321 ~~~~~~~~v~~w~pq-~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P--~~~dQ~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 321 EKTRGYGMVVPWAPQ-AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRP--FFGDQRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp HHHTTTEEEESCCCH-HHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHTSCCEEECGGGSC
T ss_pred hhcCCceEEecCCCH-HHHhcCCcCCEEEecCCcchHHHHHHhCceEEecC--ChhhHHHHHHHHHHHhCeEEEecCCCc
Confidence 468888665432 27888 5899999999999999999999999999 689999999999999 99999987788
Q ss_pred ChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 335 LTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 335 ~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+.+.+.++|++++++++ .....+.|..+.+.+
T Consensus 398 ~~~~l~~~i~~ll~~~~-----~~~~r~~a~~l~~~~ 429 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQEK-----GKKLRENLRALRETA 429 (456)
T ss_dssp CHHHHHHHHHHHHHSHH-----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHHH
Confidence 99999999999997641 123555566666554
No 25
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=99.91 E-value=5.1e-23 Score=237.75 Aligned_cols=346 Identities=10% Similarity=0.049 Sum_probs=201.1
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC-cccccccC------CCceeeeeeccCCCcccccccc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD-FVFTSEIQ------SPRLFIRKVLLDCGAVQADALT 85 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~-~~~~~~i~------~~~~~~~~~~~~~g~~~~~~~~ 85 (838)
|++.+|+++ +.++.||++|++.||++|+++||+|||++.... ........ .+++.+.... .++..... .
T Consensus 6 ~~~~~vl~~-p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~lp~~~~-~ 81 (482)
T 2pq6_A 6 NRKPHVVMI-PYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP--DGLTPMEG-D 81 (482)
T ss_dssp --CCEEEEE-CCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEEC--CCCC------
T ss_pred CCCCEEEEe-cCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECC--CCCCCccc-c
Confidence 445667554 688999999999999999999999999976421 11111100 0244454431 12211000 0
Q ss_pred cChHHHHHHHHHHhhccHHHHHHHHHHHHh----cCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHH---H-
Q 003222 86 VDRLASLEKYSETAVAPRKSILKDEVEWLN----SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIY---A- 154 (838)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~----~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~---~- 154 (838)
.+....+..+...+.......+++..+.++ ..+||+||+|. .+|+..+|+.+|||.+.+...... ..+ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (482)
T 2pq6_A 82 GDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRS 161 (482)
T ss_dssp ----CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHH
T ss_pred cCcchhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHH
Confidence 000001111222111122234444444444 25899999996 678888999999999988543210 000 0
Q ss_pred ----hhhhh--------------------cc--------cch------HHHHH---HHHhhccccceEEecCCCC-C---
Q 003222 155 ----EYVMA--------------------AG--------HHH------RSIVW---QIAEDYSHCEFLIRLPGYC-P--- 189 (838)
Q Consensus 155 ----~~~~~--------------------~~--------~~~------~~i~~---~l~~~y~~~d~ll~~~~~~-~--- 189 (838)
.+.+. .. ... +.... ...+....++.++..++.. .
T Consensus 162 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~ 241 (482)
T 2pq6_A 162 FVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241 (482)
T ss_dssp HHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHH
T ss_pred HHhcCCCCCccccccccccccCccccCCCCCCCchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHH
Confidence 01000 00 000 00000 0111222233333222111 0
Q ss_pred ----CCCCCceeecCccccc--CC-----------c---ChHHHHHHhCCCCCCcEEEEEcCCCCc-h-h---hhHHhhC
Q 003222 190 ----MPAFRDVIDVPLVVRR--LH-----------K---SRKEVRKELGIEDDVKLLILNFGGQPA-G-W---KLKEEYL 244 (838)
Q Consensus 190 ----~p~~~~v~~ip~~~~~--~~-----------~---~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~-~---~ll~~l~ 244 (838)
.+.+++++.|||+... .. . ...++.+|++..+++++|||++||.+. . . ++...+.
T Consensus 242 ~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~ 321 (482)
T 2pq6_A 242 INALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLA 321 (482)
T ss_dssp HHHHHTTCTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHH
Confidence 2233568889886432 11 1 112467888766678999999999875 2 1 2333444
Q ss_pred CCCcEEEE-eCCCC--------CC-----CCCCeEECCCCCCHHHHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCC
Q 003222 245 PSGWKCLV-CGASD--------SQ-----LPPNFIKLPKDAYTPDFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 245 ~~~~~~vv-~G~~~--------~~-----lp~nv~~~~~~~~~pdlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~ 308 (838)
..+..+++ +|... +. .++|+++.+|.+.+ ++|++ +++||||||+||++|++++|||+|++|
T Consensus 322 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~pq~-~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P-- 398 (482)
T 2pq6_A 322 NCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQD-KVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWP-- 398 (482)
T ss_dssp HTTCEEEEECCGGGSTTTGGGSCHHHHHHHTTTEEEESCCCHH-HHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--
T ss_pred hcCCcEEEEEcCCccccccccCcHhHHHhcCCCEEEEeecCHH-HHhcCCCCCEEEecCCcchHHHHHHcCCCEEecC--
Confidence 45565554 45321 11 35788887654432 78966 667999999999999999999999999
Q ss_pred CCCChHHHHHHHH-HcCcEEEEecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 309 YFNEEPFLRNMLE-FYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 309 ~~~EQ~~Na~~l~-~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
.+.||+.||++++ +.|+|+.+. .+++.+.+.++|++++++++ .....+.|..+.+.+
T Consensus 399 ~~~dQ~~na~~~~~~~G~g~~l~-~~~~~~~l~~~i~~ll~~~~-----~~~~r~~a~~l~~~~ 456 (482)
T 2pq6_A 399 FFADQPTDCRFICNEWEIGMEID-TNVKREELAKLINEVIAGDK-----GKKMKQKAMELKKKA 456 (482)
T ss_dssp CSTTHHHHHHHHHHTSCCEEECC-SSCCHHHHHHHHHHHHTSHH-----HHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhCEEEEEC-CCCCHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHH
Confidence 6799999999997 799999998 67899999999999997651 123555666666654
No 26
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.91 E-value=1e-23 Score=231.76 Aligned_cols=188 Identities=17% Similarity=0.054 Sum_probs=143.7
Q ss_pred eEEEEccccccccccccccC-CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 497 IFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
|+.++|||||.|+|||++.+ |+++|++||++++++.++++++.+ |.+...+
T Consensus 1 mi~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~~~-----------------------i~~~~~~----- 52 (335)
T 3gon_A 1 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYR-----------------------IYSDMFD----- 52 (335)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE-----------------------EEETTSS-----
T ss_pred CEEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCCCE-----------------------EEEeCCC-----
Confidence 46789999999999998887 999999999999999999987643 2221111
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCC---CCCChHHHH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEG---KGVSSSASV 652 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g---~GLgSSAA~ 652 (838)
+.+++.. .....-|.++++.+.. ++++.+..+ .|+++.|.|++|.+ +|||||||+
T Consensus 53 --~~~~~~~------------------~~~~~~~~~~i~~~~~-~l~~~~~~~-~~~~i~I~s~lp~~~~~~GLgSSaa~ 110 (335)
T 3gon_A 53 --FAVDLRP------------------NPDYSLIQETIALMGD-FLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSSGSV 110 (335)
T ss_dssp --SCBCSSC------------------CTTTHHHHHHHHHHHH-HHHHTTCCC-CCEEEEEECCSEETTEECSSCHHHHH
T ss_pred --cccccCc------------------CCCcHHHHHHHHHHHH-HHHHcCCCC-CceEEEEEecCCcccCCCCcchHHHH
Confidence 1111110 0011123455555433 455777776 79999999999987 699999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCC-------------------
Q 003222 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPA------------------- 713 (838)
Q Consensus 653 ~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~------------------- 713 (838)
+||++.|++.++++.+++.+++++|+.+|+.++|.+|| |||+++++||. +++...+.
T Consensus 111 ~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg-~D~a~a~~Gg~---i~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (335)
T 3gon_A 111 VVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAEDL---VLYQSFDRQKVAAWLEEENLATVLERD 186 (335)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCS-HHHHHHHHTSC---EEEECCCHHHHHHHHHHSCHHHHHHSC
T ss_pred HHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCC-CCcceeecCCe---EEEEeCCccccceeecccchhheeccc
Confidence 99999999999999999999999999999999999999 99999999996 33332111
Q ss_pred --ceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 714 --ELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 714 --~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
....+++.+..+.+++++|+.++++
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~~~~~~~t 213 (335)
T 3gon_A 187 WGFSISQVKPTLECDFLVGWTKEVAVS 213 (335)
T ss_dssp CCCEEEECCCCSCCEEEEEECCCCCCH
T ss_pred ccceeEEcCCccccceEEeecCChhhH
Confidence 1124556667889999999999865
No 27
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.91 E-value=5.5e-23 Score=233.39 Aligned_cols=343 Identities=15% Similarity=0.093 Sum_probs=200.8
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccC--CCcccccccccChHH
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLD--CGAVQADALTVDRLA 90 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~ 90 (838)
|..++|+++ ++.+.||+.++++||++|+++||+|+|++.... ...+...++.+...... .+.........+...
T Consensus 5 m~m~kIl~~-~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (430)
T 2iyf_A 5 TTPAHIAMF-SIAAHGHVNPSLEVIRELVARGHRVTYAIPPVF---ADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLD 80 (430)
T ss_dssp ---CEEEEE-CCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGG---HHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHH
T ss_pred cccceEEEE-eCCCCccccchHHHHHHHHHCCCeEEEEeCHHH---HHHHHhCCCEEEEcCCcCccccccccccchhhHH
Confidence 555678775 677899999999999999999999999987531 11121123333332111 111100000111111
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCc--hhHHHH----hhh------
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS--WDFIYA----EYV------ 157 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~--~~~i~~----~~~------ 157 (838)
.+..+.. ..........+++++++||+||+|+ .+++..+|+.+|||.+.+.... |..... .+.
T Consensus 81 ~~~~~~~----~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (430)
T 2iyf_A 81 NVEPFLN----DAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQT 156 (430)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHS
T ss_pred HHHHHHH----HHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchhhhhccc
Confidence 1111111 1123445567788999999999996 4678889999999998875322 210000 000
Q ss_pred hhcccchHHHHHHHHhhc----------cccceEEecC-CCCCC--CCC-Cc-eeecCcccccCCcChHHHHHHhCCCCC
Q 003222 158 MAAGHHHRSIVWQIAEDY----------SHCEFLIRLP-GYCPM--PAF-RD-VIDVPLVVRRLHKSRKEVRKELGIEDD 222 (838)
Q Consensus 158 ~~~~~~~~~i~~~l~~~y----------~~~d~ll~~~-~~~~~--p~~-~~-v~~ip~~~~~~~~~~~~~r~~l~~~~~ 222 (838)
+.. ..+....+.+...+ ..++.++... ..... ..+ ++ ++.+|+.... +.+..++....++
T Consensus 157 ~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~vG~~~~~----~~~~~~~~~~~~~ 231 (430)
T 2iyf_A 157 ERG-RAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGD----RAEEGGWQRPAGA 231 (430)
T ss_dssp HHH-HHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGSCTTTEEECCCCC---------CCCCCCCTTC
T ss_pred hHH-HHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccCCCccEEEeCCcCCC----CCCCCCCccccCC
Confidence 000 00000011111111 1233333221 11110 011 23 5666642211 0000112211346
Q ss_pred CcEEEEEcCCCCch-hh----hHHhhCC-CCcEE-EEeCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecCChh
Q 003222 223 VKLLILNFGGQPAG-WK----LKEEYLP-SGWKC-LVCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYG 290 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~-~~----ll~~l~~-~~~~~-vv~G~~~~-----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~ 290 (838)
+++||+++|+.... .+ +++.+.. +++.+ +++|.... .+++||++.+|.+.+ ++|++||+||+|+|++
T Consensus 232 ~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~~~~~~v~~~~~~~~~-~~l~~ad~~v~~~G~~ 310 (430)
T 2iyf_A 232 EKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQL-AILRQADLFVTHAGAG 310 (430)
T ss_dssp SEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGCSCCTTEEEESSCCHH-HHHTTCSEEEECCCHH
T ss_pred CCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhccCCCCeEEEecCCHH-HHhhccCEEEECCCcc
Confidence 78999999998731 22 3334434 36766 46676432 257899998887765 8999999999999999
Q ss_pred hHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHH
Q 003222 291 TVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGE 361 (838)
Q Consensus 291 Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~ 361 (838)
|++||+++|+|+|++| ...||..|++.+++.|+|+.+...+++++.+.++|.++++++.... ....+.+
T Consensus 311 t~~Ea~~~G~P~i~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 388 (430)
T 2iyf_A 311 GSQEGLATATPMIAVP--QAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTR 388 (430)
T ss_dssp HHHHHHHTTCCEEECC--CSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhCCCEEECC--CccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCcHH
Confidence 9999999999999999 4679999999999999999998877788999999999998653211 1245777
Q ss_pred HHHHHHHHHh
Q 003222 362 VAAHILQETA 371 (838)
Q Consensus 362 ~~a~~i~~~~ 371 (838)
++++.|++++
T Consensus 389 ~~~~~i~~~~ 398 (430)
T 2iyf_A 389 RAADLIEAEL 398 (430)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHHh
Confidence 7777777664
No 28
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.91 E-value=1.8e-23 Score=233.70 Aligned_cols=335 Identities=11% Similarity=0.022 Sum_probs=199.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCC--Ccccc------cccccC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC--GAVQA------DALTVD 87 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~--g~~~~------~~~~~~ 87 (838)
|+|+++ ++.+.||+.++++||++|+++||+|+|++... +...+...++.+....... +.... ......
T Consensus 1 MrIl~~-~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (384)
T 2p6p_A 1 MRILFV-AAGSPATVFALAPLATAARNAGHQVVMAANQD---MGPVVTGVGLPAVATTDLPIRHFITTDREGRPEAIPSD 76 (384)
T ss_dssp CEEEEE-CCSSHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCCEEESCSSCHHHHHHBCTTSCBCCCCCS
T ss_pred CEEEEE-eCCccchHhHHHHHHHHHHHCCCEEEEEeCHH---HHHHHHhCCCEEEEeCCcchHHHHhhhcccCccccCcc
Confidence 367665 56778999999999999999999999998643 1111111122232211111 00000 000000
Q ss_pred hHHHHHHH-HHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecC-chhHHHHhhhhhcccch
Q 003222 88 RLASLEKY-SETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNF-SWDFIYAEYVMAAGHHH 164 (838)
Q Consensus 88 ~~~~l~~~-~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~-~~~~i~~~~~~~~~~~~ 164 (838)
. .....+ ..++.......+.+..+.+++++||+||+|. .+++..+|+.+|||++.+... .+...+....
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~------- 148 (384)
T 2p6p_A 77 P-VAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDADGIHPGA------- 148 (384)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCTTTHHHH-------
T ss_pred h-HHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcccchhhHHH-------
Confidence 0 111111 1111001122345567778889999999996 667788899999999887421 1100000000
Q ss_pred HHHHHHHHhhccc-----cceEEe-cCCCCCCC-CCC--ceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCc
Q 003222 165 RSIVWQIAEDYSH-----CEFLIR-LPGYCPMP-AFR--DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (838)
Q Consensus 165 ~~i~~~l~~~y~~-----~d~ll~-~~~~~~~p-~~~--~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~ 235 (838)
....+++...+.. ++..+. .+.....+ ..+ .+..+|.. .+ .+..+++...+++++||+++||.+.
T Consensus 149 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~v~v~~Gs~~~ 222 (384)
T 2p6p_A 149 DAELRPELSELGLERLPAPDLFIDICPPSLRPANAAPARMMRHVATS--RQ----CPLEPWMYTRDTRQRVLVTSGSRVA 222 (384)
T ss_dssp HHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCTTSCCCEECCCCCCC--CC----CBCCHHHHCCCSSCEEEEECSSSSS
T ss_pred HHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCCCCCCCCceEecCCC--CC----CCCCchhhcCCCCCEEEEECCCCCc
Confidence 0011112222211 222222 11111100 001 11122211 01 1122333333467899999999874
Q ss_pred h----------hhhHHhhCCCCcEEEE-eCCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCC
Q 003222 236 G----------WKLKEEYLPSGWKCLV-CGASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKL 300 (838)
Q Consensus 236 ~----------~~ll~~l~~~~~~~vv-~G~~~~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~Gv 300 (838)
. ..+++++...++.+++ +|.... .+++||.+ +|.+ +.++|++||+||||||++|++||+++|+
T Consensus 223 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~l~~~~~~v~~-~~~~-~~~~l~~~d~~v~~~G~~t~~Ea~~~G~ 300 (384)
T 2p6p_A 223 KESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQARV-GWTP-LDVVAPTCDLLVHHAGGVSTLTGLSAGV 300 (384)
T ss_dssp CCSSCCCCTTHHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTSEE-ECCC-HHHHGGGCSEEEECSCTTHHHHHHHTTC
T ss_pred cccccccHHHHHHHHHHHhcCCcEEEEEeCCCCHHhhCCCCCceEE-cCCC-HHHHHhhCCEEEeCCcHHHHHHHHHhCC
Confidence 2 1233444445676665 453211 15789999 9874 6799999999999999999999999999
Q ss_pred cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 301 PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 301 P~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
|+|++| .+.||..|++++++.|+|+.+...+++++.+.++|.++++++.... ...+|+++++.+|..++
T Consensus 301 P~v~~p--~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 301 PQLLIP--KGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTALEQLA 378 (384)
T ss_dssp CEEECC--CSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CEEEcc--CcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999999 5789999999999999999998877888999999999998753211 35668888888888775
Q ss_pred c
Q 003222 372 I 372 (838)
Q Consensus 372 ~ 372 (838)
.
T Consensus 379 ~ 379 (384)
T 2p6p_A 379 H 379 (384)
T ss_dssp H
T ss_pred h
Confidence 3
No 29
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.91 E-value=5.1e-24 Score=231.71 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=143.2
Q ss_pred ceEEEEccccccccccccccCCCeeeccccccc-eEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 003222 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREA-CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574 (838)
Q Consensus 496 ~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~-~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 574 (838)
+...++|||||||+|||+||+|+.+++++|++. +++.+++++++. .+++.+.+
T Consensus 5 ~~~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~~~--------------------~i~~~~~~------ 58 (308)
T 2x7i_A 5 RKGYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGN--------------------YSSIKSDV------ 58 (308)
T ss_dssp CEEEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTC--------------------CCEEEEEE------
T ss_pred cceEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCCCC--------------------eeEEEecC------
Confidence 456789999999999999999999999999985 889998876532 02232210
Q ss_pred CCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHH
Q 003222 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEV 654 (838)
Q Consensus 575 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~v 654 (838)
++.++. ...+|.||+++++..+.+ .. .|++|.+.++||.|+|||||||+++
T Consensus 59 ---~~~~~~---------------------~~~~~~~~v~~~~~~~~~----~~-~g~~i~i~~~iP~g~GLGSSsa~~~ 109 (308)
T 2x7i_A 59 ---YDGMLY---------------------DAPDHLKSLVNRFVELNN----IT-EPLAVTIQTNLPPSRGLGSSAAVAV 109 (308)
T ss_dssp ---CSSCCC---------------------CTTSCHHHHHHHHHHHTT----CC-SCEEEEEEECCCTTSSSCHHHHHHH
T ss_pred ---CCCChh---------------------hhhHHHHHHHHHHHHHHh----hC-CCeEEEEeccCCCCCCccHHHHHHH
Confidence 000111 113689999998776542 13 4999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCC
Q 003222 655 ASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 734 (838)
Q Consensus 655 a~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~ 734 (838)
|++.|++.++|.++++++++++|+++|+.++|.|||+ |+.++.+||. ++++ +. ...++++++.++.++|+++++
T Consensus 110 a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~-d~~~~~~g~~---~~~~-~g-~~~~~~~~~~~~~~vi~~~~~ 183 (308)
T 2x7i_A 110 AFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGI-DTQTIVSGKP---VWFQ-KG-HAETLKTLSLDGYMVVIDTGV 183 (308)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHTSC---EEEE-TT-EEEECSCCCBSSEEEEEECCC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchH-HHHHhhCCce---EEEE-cC-CCceEeccCCCceEEEEECcC
Confidence 9999999999999999999999999999999999995 9999999884 5555 32 223566666678899999999
Q ss_pred CCcCC
Q 003222 735 RHSVG 739 (838)
Q Consensus 735 ~~~~~ 739 (838)
++++.
T Consensus 184 ~~sT~ 188 (308)
T 2x7i_A 184 KGSTR 188 (308)
T ss_dssp --CCS
T ss_pred CCCHH
Confidence 87753
No 30
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.90 E-value=4.9e-23 Score=225.07 Aligned_cols=182 Identities=20% Similarity=0.277 Sum_probs=140.3
Q ss_pred cCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccc
Q 003222 490 LFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGS 569 (838)
Q Consensus 490 ~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~ 569 (838)
+-...++++.++|||||||+|||+||+||.+|++||++++++.++++++ + +|.+.+
T Consensus 14 ~~~~~~~mi~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~~~--i---------------------~i~~~~- 69 (321)
T 4hac_A 14 LVPRGSHMVSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDS--I---------------------TIQSQI- 69 (321)
T ss_dssp CCCCSCCCEEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEECSS--E---------------------EEEETT-
T ss_pred CcCCCCCEEEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEECCC--E---------------------EEEECC-
Confidence 3334467789999999999999999999999999999999999987532 2 333210
Q ss_pred ccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChH
Q 003222 570 ELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSS 649 (838)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSS 649 (838)
+ .+. ++. ....|.+|+..+ +++.+. ..|+++.+.++||.|+|||||
T Consensus 70 --------~---~~~-------~~~----------~~~~~~~~~~~~----l~~~~~--~~g~~i~i~~~iP~g~GLGSS 115 (321)
T 4hac_A 70 --------G---RTG-------LDF----------EKHPYVSAVIEK----MRKSIP--INGVFLTVDSDIPVGSGLGSS 115 (321)
T ss_dssp --------E---EES-------SCT----------TTSHHHHHHHHH----HTTTSC--CCCEEEEEEECCCSCTTCCHH
T ss_pred --------C---Ccc-------ccc----------chhHHHHHHHHH----HHHhCC--CCCEEEEEECCCCCCCCccHH
Confidence 0 000 000 112455554443 334452 369999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEE
Q 003222 650 ASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWG 729 (838)
Q Consensus 650 AA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi 729 (838)
||+++|++.|++.++|.++++++++++|+++|+.++|.++ .+||+++++||. +++ ... +.+++| ++.++|
T Consensus 116 sa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~-~~D~~~~~~Gg~---~~~--~~~---~~l~~p-~~~~vl 185 (321)
T 4hac_A 116 AAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAAS-PTDTYVSTFGGV---VTI--PER---RKLKTP-DCGIVI 185 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCC-SHHHHHHHHCSE---EEE--TTC---CEECCC-CCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc-HHHHHHHHcCCe---EEE--cCC---ceeccC-CCEEEE
Confidence 9999999999999999999999999999999999999955 589999999993 444 222 234466 789999
Q ss_pred EeCCCCCcCC
Q 003222 730 IDSGIRHSVG 739 (838)
Q Consensus 730 ~~s~~~~~~~ 739 (838)
+++++++++.
T Consensus 186 v~p~~~~sT~ 195 (321)
T 4hac_A 186 GDTGVFSSTK 195 (321)
T ss_dssp EECCCCCCHH
T ss_pred EECCCCccHH
Confidence 9999998763
No 31
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.90 E-value=4.4e-23 Score=232.41 Aligned_cols=343 Identities=15% Similarity=0.129 Sum_probs=200.8
Q ss_pred ceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeecc--CCCcc-------cccc-
Q 003222 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLL--DCGAV-------QADA- 83 (838)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~--~~g~~-------~~~~- 83 (838)
.+|+|+|+. +.+.||+.++++||++|+++||+|+|++... +...+...++.+..... ..++. ....
T Consensus 19 ~~MrIl~~~-~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 3otg_A 19 RHMRVLFAS-LGTHGHTYPLLPLATAARAAGHEVTFATGEG---FAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSP 94 (412)
T ss_dssp CSCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCC
T ss_pred ceeEEEEEc-CCCcccHHHHHHHHHHHHHCCCEEEEEccHH---HHHHHHhcCCceeecCcccccchhhhhhhhhcccCC
Confidence 347887654 6688999999999999999999999998742 12222112333333210 00000 0000
Q ss_pred cccChHHHHHHHHHHhhcc-HHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEec-Cc-hhHHHHhhhhh
Q 003222 84 LTVDRLASLEKYSETAVAP-RKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FS-WDFIYAEYVMA 159 (838)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~-~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~-~~-~~~i~~~~~~~ 159 (838)
........+..+...+... ....+.+..+++++++||+||+|. .+.+..+|+.++||+|.+.. +. |.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~~~~~--- 171 (412)
T 3otg_A 95 EGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDLTRSI--- 171 (412)
T ss_dssp TTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCCSHHHHHH---
T ss_pred ccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCchhhhHHH---
Confidence 0000111111111111101 112345567788999999999996 56677888999999988632 11 21111110
Q ss_pred cccchHHHHHHHHhhc----------cccceEEe-cCCCCCCCC-CCceeecCcccccCCcChHHHHHH-hCCCCCCcEE
Q 003222 160 AGHHHRSIVWQIAEDY----------SHCEFLIR-LPGYCPMPA-FRDVIDVPLVVRRLHKSRKEVRKE-LGIEDDVKLL 226 (838)
Q Consensus 160 ~~~~~~~i~~~l~~~y----------~~~d~ll~-~~~~~~~p~-~~~v~~ip~~~~~~~~~~~~~r~~-l~~~~~~~~V 226 (838)
...+ ......+ ..++..+. .+.....+. .....+.|...... ..+.+.+++ ...++++++|
T Consensus 172 ----~~~~-~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v 245 (412)
T 3otg_A 172 ----EEEV-RGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPF-AEQGDLPAWLSSRDTARPLV 245 (412)
T ss_dssp ----HHHH-HHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCC-CCCCCCCGGGGGSCTTSCEE
T ss_pred ----HHHH-HHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCC-CCCCCCCCccccccCCCCEE
Confidence 0111 1111111 12232332 111111000 00011111111111 011112222 1234578899
Q ss_pred EEEcCCCCch-hh----hHHhhCCCCcEEE-EeCCCC-C----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHH
Q 003222 227 ILNFGGQPAG-WK----LKEEYLPSGWKCL-VCGASD-S----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEA 295 (838)
Q Consensus 227 lvs~Gs~~~~-~~----ll~~l~~~~~~~v-v~G~~~-~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Ea 295 (838)
++++|+.... .+ +++.+...++.++ ++|... . .+++||++.+|. .++++|++||+||+++|++|++||
T Consensus 246 lv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~~~~v~~~~~~-~~~~~l~~ad~~v~~~g~~t~~Ea 324 (412)
T 3otg_A 246 YLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWV-PQAALLPHVDLVVHHGGSGTTLGA 324 (412)
T ss_dssp EEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCCCTTCCCCCTTEEEESCC-CHHHHGGGCSEEEESCCHHHHHHH
T ss_pred EEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCChhhhccCCCcEEEeCCC-CHHHHHhcCcEEEECCchHHHHHH
Confidence 9999998532 22 2333433456555 445433 1 257899999998 688999999999999999999999
Q ss_pred HHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHH
Q 003222 296 LAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHI 366 (838)
Q Consensus 296 l~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~ 366 (838)
+++|+|+|++| ...||..|++.+++.|+|..+...+++++.+.++|.++++++.... ....+.+++++.
T Consensus 325 ~a~G~P~v~~p--~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (412)
T 3otg_A 325 LGAGVPQLSFP--WAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRL 402 (412)
T ss_dssp HHHTCCEEECC--CSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTT
T ss_pred HHhCCCEEecC--CchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999 4589999999999999999999888888999999999998763211 234577777777
Q ss_pred HHHHhc
Q 003222 367 LQETAI 372 (838)
Q Consensus 367 i~~~~~ 372 (838)
|++++.
T Consensus 403 ~~~l~~ 408 (412)
T 3otg_A 403 LPGFAS 408 (412)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 777653
No 32
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=99.90 E-value=4.3e-22 Score=228.68 Aligned_cols=337 Identities=13% Similarity=0.079 Sum_probs=199.7
Q ss_pred ceEEEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCc--cccccc-----CCCceeeeeeccCCCccccccc
Q 003222 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDF--VFTSEI-----QSPRLFIRKVLLDCGAVQADAL 84 (838)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~~--~~~~~i-----~~~~~~~~~~~~~~g~~~~~~~ 84 (838)
++++|++ ++.++.||++|+++||+.|+.+ ||+|+|++..... .+...+ ...++.+.... .+.......
T Consensus 8 ~~~~vv~-~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp--~~~~~~~~~ 84 (463)
T 2acv_A 8 KNSELIF-IPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLP--EVEPPPQEL 84 (463)
T ss_dssp HCEEEEE-ECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECC--CCCCCCGGG
T ss_pred CCCEEEE-EcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECC--CCCCCcccc
Confidence 4567755 4788899999999999999999 9999999775321 111111 01345555431 111100000
Q ss_pred ccChHHHHHHHHHHhhccHHHHHHHHHHHHhc---CCCcEEEECC-CchHHHHHHHhCCcEEEEecCch-h-HHHHh---
Q 003222 85 TVDRLASLEKYSETAVAPRKSILKDEVEWLNS---IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-D-FIYAE--- 155 (838)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~---~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~-~-~i~~~--- 155 (838)
..+.. .. +... .........+++++ .+||+||+|. .+++..+|+.+|||.+.+..... . ..+..
T Consensus 85 ~~~~~-~~--~~~~----~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 157 (463)
T 2acv_A 85 LKSPE-FY--ILTF----LESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKN 157 (463)
T ss_dssp GGSHH-HH--HHHH----HHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGG
T ss_pred cCCcc-HH--HHHH----HHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHh
Confidence 01111 11 1111 11122233455555 7899999996 67788899999999887643221 0 00000
Q ss_pred -----------------hhhhc-cc----chH-HH------HHH---HHhhccccceEEecCCCC------------CCC
Q 003222 156 -----------------YVMAA-GH----HHR-SI------VWQ---IAEDYSHCEFLIRLPGYC------------PMP 191 (838)
Q Consensus 156 -----------------~~~~~-~~----~~~-~i------~~~---l~~~y~~~d~ll~~~~~~------------~~p 191 (838)
..+.. .. .+. .+ ... ....+..++.++..++.. ..|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p 237 (463)
T 2acv_A 158 RQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEK 237 (463)
T ss_dssp SCTTCCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTT
T ss_pred hcccCCCCCccccCceeECCCCCCCCChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhcccc
Confidence 01111 00 000 00 000 011122233222211110 001
Q ss_pred CCCceeecCcccccCC--------cChHHHHHHhCCCCCCcEEEEEcCCCC-c-hh----hhHHhhCCCCcEEE-EeCCC
Q 003222 192 AFRDVIDVPLVVRRLH--------KSRKEVRKELGIEDDVKLLILNFGGQP-A-GW----KLKEEYLPSGWKCL-VCGAS 256 (838)
Q Consensus 192 ~~~~v~~ip~~~~~~~--------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~-~-~~----~ll~~l~~~~~~~v-v~G~~ 256 (838)
.++++.+|++..... ..+.++.+|++..+++++|||+|||++ . .. ++...+...++.++ ++|..
T Consensus 238 -~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 316 (463)
T 2acv_A 238 -IPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE 316 (463)
T ss_dssp -SCCEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC
T ss_pred -CCcEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 346788888654321 123567888887668899999999998 4 21 23334433456555 45653
Q ss_pred ---C-CC----C--CCCeEECCCCCCHHHHHh--hcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH-HHc
Q 003222 257 ---D-SQ----L--PPNFIKLPKDAYTPDFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML-EFY 323 (838)
Q Consensus 257 ---~-~~----l--p~nv~~~~~~~~~pdlLa--~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l-~~~ 323 (838)
. .. . ++|+.+++|.+.+ ++|+ ++|+||||||+||++|++++|||+|++| .+.||+.||+++ ++.
T Consensus 317 ~~~l~~~~~~~~~~~~~~~v~~w~pq~-~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P--~~~dQ~~Na~~lv~~~ 393 (463)
T 2acv_A 317 KKVFPEGFLEWMELEGKGMICGWAPQV-EVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP--IYAEQQLNAFRLVKEW 393 (463)
T ss_dssp GGGSCTTHHHHHHHHCSEEEESSCCHH-HHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECC--CSTTHHHHHHHHHHTS
T ss_pred cccCChhHHHhhccCCCEEEEccCCHH-HHhCCCccCeEEecCCchhHHHHHHcCCCeeecc--chhhhHHHHHHHHHHc
Confidence 1 11 2 5677876544322 7887 5999999999999999999999999999 689999999995 899
Q ss_pred CcEEEE-e---cC--CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 324 QGGVEM-I---RR--DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 324 G~g~~l-~---~~--~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
|+|+.+ . .. .++.+.+.++|++++++. ....+.|..+.+.+
T Consensus 394 g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~-------~~~r~~a~~l~~~~ 440 (463)
T 2acv_A 394 GVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD-------SIVHKKVQEMKEMS 440 (463)
T ss_dssp CCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTT-------CTHHHHHHHHHHHH
T ss_pred CeEEEEecccCCCCccccHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHH
Confidence 999998 3 34 678899999999998522 23555556665554
No 33
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.89 E-value=1.1e-22 Score=223.58 Aligned_cols=189 Identities=18% Similarity=0.186 Sum_probs=145.7
Q ss_pred CceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 003222 495 EEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574 (838)
Q Consensus 495 ~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 574 (838)
++.+.++|||||||+|||+||+|+.++.++|++++++.+.++++. +.+.+.+..
T Consensus 11 ~~~~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~--------------------~~~~~~~~~------ 64 (332)
T 2hfs_A 11 KTTGKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGV--------------------PGLQVDDQR------ 64 (332)
T ss_dssp BCCSCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTC--------------------CSEEEEECC------
T ss_pred CCeEEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCC--------------------CCeEEEecC------
Confidence 455678999999999999999999999999999999999876421 113332210
Q ss_pred CCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCC-CCCEEEEEEeCCCCCCCCChHHHHH
Q 003222 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF-EDSISMLVSSAVPEGKGVSSSASVE 653 (838)
Q Consensus 575 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~-~~g~~i~i~s~iP~g~GLgSSAA~~ 653 (838)
..++ ... ....|.+..++..+++..|... ..|++|.+.++||.|+|||||||++
T Consensus 65 ---~~~~----------~~~------------~~~~~~~~~a~~~~~~~~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~ 119 (332)
T 2hfs_A 65 ---PAIP----------GYI------------AQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASDV 119 (332)
T ss_dssp ---CCCT----------THH------------HHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECSCCCCTTSCHHHHHH
T ss_pred ---cccc----------ccc------------cccchhHHHHHHHHHHHcCCccCCCceEEEEEcCCCCCCCccHHHHHH
Confidence 0010 000 0123444445566666666542 1599999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCc-eeeeeccCCCeEEEEEeC
Q 003222 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE-LLGVVEIPSHIRFWGIDS 732 (838)
Q Consensus 654 va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~-~~~~v~~~~~~~~vi~~s 732 (838)
+|++.|++.++|.++++.+++++|+++|+.++|.|||+ |+.++++||. +++.....+ ...++++++++.++++++
T Consensus 120 ~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~Gg~---~~~~~~~g~~~~~~~~~~~~~~~vl~~~ 195 (332)
T 2hfs_A 120 VAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYGGL---ILYRRQNGKSVFKPIAFQQRLYLVVVGT 195 (332)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHCEE---EEEEECSSSEEEEEECCCSCEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcCCe---EEEecCCCCcceeeecCCCCcEEEEEEC
Confidence 99999999999999999999999999999999999996 9999999993 444333333 336777777899999999
Q ss_pred CCCCcC
Q 003222 733 GIRHSV 738 (838)
Q Consensus 733 ~~~~~~ 738 (838)
++++++
T Consensus 196 ~~~~~T 201 (332)
T 2hfs_A 196 GINAST 201 (332)
T ss_dssp SCCCCH
T ss_pred CCCccH
Confidence 999876
No 34
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.89 E-value=1e-22 Score=222.27 Aligned_cols=192 Identities=13% Similarity=0.178 Sum_probs=142.3
Q ss_pred eEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 003222 497 IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (838)
.+.++|||||||+|||+||+|++++++||++++++.+++++++.++ +.+.+.+ .
T Consensus 5 ~~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~i~---------------------i~~~~~~-----~ 58 (317)
T 1kkh_A 5 HMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEII---------------------LNLNDLN-----K 58 (317)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEE---------------------EEETTTT-----E
T ss_pred CEEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCCCeEE---------------------EEeCCCC-----C
Confidence 4678999999999999999999999999999999999987664433 3221100 0
Q ss_pred ceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCCCCCCChHHHHH
Q 003222 577 TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPEGKGVSSSASVE 653 (838)
Q Consensus 577 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~---~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~ 653 (838)
..++++++.. + ..+..| ++++.++..+.. ..+.....|+++.+.++||.|+|||||||++
T Consensus 59 ~~~~~~~~~~----~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~~ 121 (317)
T 1kkh_A 59 SLGLNLNEIK----N------------INPNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASIT 121 (317)
T ss_dssp EEEEETTTGG----G------------CCGGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHH
T ss_pred ceEEEeccCC----c------------cCcccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHHH
Confidence 0112221100 0 012356 555665554422 2343323699999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC--C----CeEE
Q 003222 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP--S----HIRF 727 (838)
Q Consensus 654 va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~--~----~~~~ 727 (838)
+|++.|++.++|.++++++++++|+++|+.++|.+|| +|+.++++||. +++ ++... ++++++ . ++.+
T Consensus 122 ~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~Gg~---~~~--~~~~~-~~~~~~~~~~l~~~~~~ 194 (317)
T 1kkh_A 122 IGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKGI---LEI--KNNKF-RKIKGEFEEFLKNCKFL 194 (317)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCSE---EEE--SSSCE-EEECHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhCCe---EEE--cCCCc-eEecCCcccccccCcEE
Confidence 9999999999999999999999999999999999998 89999999984 333 34333 555432 1 2578
Q ss_pred EEEeCCCCCcC
Q 003222 728 WGIDSGIRHSV 738 (838)
Q Consensus 728 vi~~s~~~~~~ 738 (838)
+++++++++++
T Consensus 195 vl~~~~~~~~T 205 (317)
T 1kkh_A 195 IVYAEKRKKKT 205 (317)
T ss_dssp EEEEECCCSCH
T ss_pred EEEECCCcCcH
Confidence 99999999875
No 35
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.85 E-value=1.6e-20 Score=202.36 Aligned_cols=170 Identities=19% Similarity=0.245 Sum_probs=126.9
Q ss_pred eEEEEccccccccccccccCCCeeecccc-ccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 497 IFVARAPGRLDVMGGIADYSGSLVLQMPI-REACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy~gg~vl~~ai-~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
++.++|||||||+|||+||+|+.++.+|| ++++++.++++++ .+++
T Consensus 5 ~~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~~-~~~i-------------------------------- 51 (292)
T 2oi2_A 5 VGVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAES-PWRL-------------------------------- 51 (292)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECSS-CCCC--------------------------------
T ss_pred cEEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECCC-ceEE--------------------------------
Confidence 46789999999999999999999999999 9999999987632 1111
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVA 655 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va 655 (838)
.... ..|.+.-+...+ .|+. ..|++|.+.++||.|+|||||||.++|
T Consensus 52 -----~~~~------------------------~~~~~~~~~~~~---~~~~-~~g~~i~i~~~iP~g~GLGSSsa~~~a 98 (292)
T 2oi2_A 52 -----YEED------------------------TLSMAVYASLEY---LNIT-EACIRCEIDSAIPEKRGMGSSAAISIA 98 (292)
T ss_dssp -----CCCS------------------------HHHHHHHHHHHH---HTCS-CCCEEEEEC----CCGGGSCHHHHHHH
T ss_pred -----EecC------------------------ccchhhhhhHHH---hccc-CCceEEEEEecCCCCCCchHHHHHHHH
Confidence 0000 012111111211 2543 269999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC-CCeEEEEEeCCC
Q 003222 656 SMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP-SHIRFWGIDSGI 734 (838)
Q Consensus 656 ~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~-~~~~~vi~~s~~ 734 (838)
++.|++.++|.++++++++++|+++|+.++|+|||+ |++++++||. +++ ++.. ..++++++ ..+ ++|+++++
T Consensus 99 ~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~gg~---~~~-~~~~-~~~~~~~~~~~~-~~i~~~~~ 171 (292)
T 2oi2_A 99 AIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSDQP---IRF-IKNV-GFTELEMDLSAY-LVIADTGV 171 (292)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCSSC---EEE-ETTT-EEEECCCCCSCE-EEEEECSS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcCce---EEE-EcCC-CceeecCCCCCE-EEEEECCC
Confidence 999999999999999999999999999999999995 9999999985 344 3332 23555543 344 88999999
Q ss_pred CCcCC
Q 003222 735 RHSVG 739 (838)
Q Consensus 735 ~~~~~ 739 (838)
++++.
T Consensus 172 ~~sT~ 176 (292)
T 2oi2_A 172 YGHTR 176 (292)
T ss_dssp CCCHH
T ss_pred CCcHH
Confidence 88763
No 36
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.81 E-value=1.1e-18 Score=192.87 Aligned_cols=321 Identities=16% Similarity=0.034 Sum_probs=196.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
|+|+++..+.| ||..++..||++|.++||+|++++...... ...+...++.+..... .++. .......+...
T Consensus 7 mkIl~~~~~~g-G~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~-----~~~~~~~~~~~ 78 (364)
T 1f0k_A 7 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTADRME-ADLVPKHGIEIDFIRI-SGLR-----GKGIKALIAAP 78 (364)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECTTSTH-HHHGGGGTCEEEECCC-CCCT-----TCCHHHHHTCH
T ss_pred cEEEEEeCCCc-cchhHHHHHHHHHHHcCCEEEEEecCCcch-hhhccccCCceEEecC-CccC-----cCccHHHHHHH
Confidence 68888876655 999999999999999999999998754211 1111111233322110 0100 00000111001
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEECCCc---hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHH
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~---~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~ 172 (838)
.. ....+....+++++.+||+|+++..+ .+..+++..++|+|....-.+.... ..
T Consensus 79 ~~-----~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~---------------~~-- 136 (364)
T 1f0k_A 79 LR-----IFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLT---------------NK-- 136 (364)
T ss_dssp HH-----HHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSCCHH---------------HH--
T ss_pred HH-----HHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCCCcHH---------------HH--
Confidence 11 01123445677889999999998632 3456778889999865332111000 01
Q ss_pred hhccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhH-Hh---hCCC
Q 003222 173 EDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-EE---YLPS 246 (838)
Q Consensus 173 ~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll-~~---l~~~ 246 (838)
..+..++.++.... ...+ ...+++.|+........ ..++.++++++.++|++++|+.... .+++ ++ +..
T Consensus 137 ~~~~~~d~v~~~~~-~~~~-~~~~i~n~v~~~~~~~~--~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~- 211 (364)
T 1f0k_A 137 WLAKIATKVMQAFP-GAFP-NAEVVGNPVRTDVLALP--LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD- 211 (364)
T ss_dssp HHTTTCSEEEESST-TSSS-SCEECCCCCCHHHHTSC--CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG-
T ss_pred HHHHhCCEEEecCh-hhcC-CceEeCCccchhhcccc--hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC-
Confidence 11223444443211 1111 11233333322111111 1245567666777788888887653 2222 32 322
Q ss_pred CcE-EEEeCCCCCC--------CC-CCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCC-CChHH
Q 003222 247 GWK-CLVCGASDSQ--------LP-PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF-NEEPF 315 (838)
Q Consensus 247 ~~~-~vv~G~~~~~--------lp-~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~-~EQ~~ 315 (838)
++. ++++|..... ++ +||++.++++.++++|+.||++|+++|.+++.||+++|+|+|+.+.... .+|..
T Consensus 212 ~~~~l~i~G~~~~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~ 291 (364)
T 1f0k_A 212 SVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYW 291 (364)
T ss_dssp GEEEEEECCTTCHHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHH
T ss_pred CcEEEEEcCCchHHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCchHHHHHHHHhCCCEEEeeCCCCchhHHH
Confidence 566 4567766421 22 5899999998899999999999999998999999999999999986544 57899
Q ss_pred HHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc---------cCCCCHHHHHHHHHHHHhcc
Q 003222 316 LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY---------EGGINGGEVAAHILQETAIG 373 (838)
Q Consensus 316 Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~---------~~~~~g~~~~a~~i~~~~~~ 373 (838)
|++.+++.|.|..++..+++++.+.++|.++ ++..+ .....+.+++++.++++...
T Consensus 292 ~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 356 (364)
T 1f0k_A 292 NALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVSRVARA 356 (364)
T ss_dssp HHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH
Confidence 9999999999999988877778888888766 33211 03467788888888887654
No 37
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.80 E-value=2.1e-18 Score=183.98 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=152.7
Q ss_pred EEEEee---cCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH
Q 003222 17 VFAYYV---TGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE 93 (838)
Q Consensus 17 ~Il~~v---~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ 93 (838)
+|+|.+ ...|+||++||++||++|+ +|.|+|......+...+ ++.+.. ... .+
T Consensus 2 ki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~~~~~~---g~~v~~-------l~~----~d------ 57 (282)
T 3hbm_A 2 KVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLPLEGSLIDEI---PYPVYE-------LSS----ES------ 57 (282)
T ss_dssp CEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECCCTTCCGGGC---CSCEEE-------CSS----SC------
T ss_pred EEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEecCcHhHHHHC---CCeEEE-------cCc----cC------
Confidence 344443 5678999999999999998 89999875322111111 111111 000 00
Q ss_pred HHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHH---HH-hCCcEEEEecCchhHHHHhhhhhcccchHHHHH
Q 003222 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA---AD-AGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA---~~-lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
..+..+++++.+||+||.|++.....+- +. .+++.+.++++.- .+
T Consensus 58 -------------~~~~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~iDD~~~-----~~------------- 106 (282)
T 3hbm_A 58 -------------IYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDEIK-----PH------------- 106 (282)
T ss_dssp -------------HHHHHHHHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEEECSSCC-----CC-------------
T ss_pred -------------HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEEEecCCC-----cc-------------
Confidence 1122445677899999999855443332 22 4789999987641 00
Q ss_pred HHHhhccccceEEecCCC-------CCCCCCCceeecCcccccCCcChHHHHHHhC-CCCCCcEEEEEcCCCCch---hh
Q 003222 170 QIAEDYSHCEFLIRLPGY-------CPMPAFRDVIDVPLVVRRLHKSRKEVRKELG-IEDDVKLLILNFGGQPAG---WK 238 (838)
Q Consensus 170 ~l~~~y~~~d~ll~~~~~-------~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~-~~~~~~~Vlvs~Gs~~~~---~~ 238 (838)
.+|.++..... ...|.. .....|+.. .+.+++..+.-. ...+.+.|++++||.+.. .+
T Consensus 107 -------~~Dllin~~~~~~~~~Y~~~~p~~-~~~l~G~~Y---~~lR~eF~~~~~~~r~~~~~ILv~~GG~d~~~l~~~ 175 (282)
T 3hbm_A 107 -------HCDILLNVNAYAKASDYEGLVPFK-CEVRCGFSY---ALIREEFYQEAKENRKKKYDFFICMGGTDIKNLSLQ 175 (282)
T ss_dssp -------CCSEEEECSTTCCGGGGTTTCC-C-CEEEESGGG---CCCCHHHHHHTTCCCCCCEEEEEECCSCCTTCHHHH
T ss_pred -------cCCEEEeCCcccchhhccccCCCC-CeEeeCCcc---cccCHHHHHhhhhccccCCeEEEEECCCchhhHHHH
Confidence 12222221100 000100 011223211 122334332211 123456899999988653 34
Q ss_pred hHHhhCCCCcEEEEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC
Q 003222 239 LKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 239 ll~~l~~~~~~~vv~G~~~~~---------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~ 309 (838)
+++++.......+++|++.+. ..+|+.+.+|+++|+++|+.||++||+|| +|++|++++|+|+|++|.
T Consensus 176 vl~~L~~~~~i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aDlvI~~gG-~T~~E~~~~g~P~i~ip~-- 252 (282)
T 3hbm_A 176 IASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESNKLIISAS-SLVNEALLLKANFKAICY-- 252 (282)
T ss_dssp HHHHSCTTSCEEEEECTTCTTHHHHHHHHHTCSSEEEEESCSCHHHHHHTEEEEEEESS-HHHHHHHHTTCCEEEECC--
T ss_pred HHHHhhcCCCEEEEECCCchHHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCCEEEECCc-HHHHHHHHcCCCEEEEeC--
Confidence 555554433455677887653 13589999999999999999999999988 899999999999999994
Q ss_pred CCChHHHHHHHHHcCcEEEEec
Q 003222 310 FNEEPFLRNMLEFYQGGVEMIR 331 (838)
Q Consensus 310 ~~EQ~~Na~~l~~~G~g~~l~~ 331 (838)
..+|..||+.+++.|+++.+..
T Consensus 253 ~~~Q~~nA~~l~~~G~~~~~~~ 274 (282)
T 3hbm_A 253 VKNQESTATWLAKKGYEVEYKY 274 (282)
T ss_dssp SGGGHHHHHHHHHTTCEEECGG
T ss_pred CCCHHHHHHHHHHCCCEEEcch
Confidence 4689999999999999988763
No 38
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.77 E-value=4.3e-18 Score=183.81 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=134.0
Q ss_pred EEEEccccccccccccccCCCeeecccccc-ceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIRE-ACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~-~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (838)
+.++||+|++.+|+|.| ++++++|. .+++.+.+++++. +.+..
T Consensus 3 i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~~~~~---------------------~~i~~---------- 46 (296)
T 1h72_C 3 VRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAIDDKE---------------------IIIEV---------- 46 (296)
T ss_dssp EEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEESSSS---------------------EEEEE----------
T ss_pred EEEEEEeehhccccchh-----hhHHhcccccEEEEEEecCCCe---------------------EEEEE----------
Confidence 57899999999999776 89999998 4555565554321 22221
Q ss_pred ceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHH
Q 003222 577 TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 656 (838)
Q Consensus 577 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~ 656 (838)
+-.+ + +.+.|.||+..++..+.+..|.. .|++|.+.++||.|+|||||||.++|+
T Consensus 47 ----~~~~-------~------------~~~~~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~iP~g~GLGSSsa~~~a~ 101 (296)
T 1h72_C 47 ----DDKN-------I------------PTDPDKNVAGIVAKKMIDDFNIG--KGVKITIKKGVKAGSGLGSSAASSAGT 101 (296)
T ss_dssp ----SCTT-------S------------CCCTTTSHHHHHHHHHHHHTTCC--CEEEEEEECSSCTTSSSCHHHHHHHHH
T ss_pred ----cCCc-------C------------CCCCccCcHHHHHHHHHHHhCCC--CCeEEEEEcCCCCCCCccHHHHHHHHH
Confidence 0001 0 11238899999988887666764 699999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCC
Q 003222 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736 (838)
Q Consensus 657 ~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~ 736 (838)
+.|++.++|.++++++++++|+++|..++|.+++ .|-.++++||. +++.++.+..+ .++++|.++.++|+++++..
T Consensus 102 ~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~-ddv~~~~~gg~--~~~~~~~~~~~-~~~~~~~~~~~vl~~p~~~~ 177 (296)
T 1h72_C 102 AYAINELFKLNLDKLKLVDYASYGELASSGAKHA-DNVAPAIFGGF--TMVTNYEPLEV-LHIPIDFKLDILIAIPNISI 177 (296)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCC-TTHHHHHHCSE--EEEEETTTTEE-EEECCCSCCCEEEECCSSCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCc-cchHHHHhCCE--EEEEeCCceEE-EEEcCCCCeEEEEEeCCCCc
Confidence 9999999999999999999999999999999996 24445899984 33333433323 67777778889999999865
Q ss_pred c
Q 003222 737 S 737 (838)
Q Consensus 737 ~ 737 (838)
+
T Consensus 178 ~ 178 (296)
T 1h72_C 178 N 178 (296)
T ss_dssp C
T ss_pred c
Confidence 4
No 39
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.75 E-value=6.2e-18 Score=181.26 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=129.9
Q ss_pred EEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 499 VARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 499 ~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
.++||||||| +|+|+| |+++.++++||+++.++.+.++++++ +++.+
T Consensus 4 ~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~~---------------------i~i~~------- 55 (283)
T 2ww4_A 4 QWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGD---------------------IRLLT------- 55 (283)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSC---------------------EEECS-------
T ss_pred cccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCCc---------------------EEEEe-------
Confidence 4689999999 899999 99999999999999999999876533 22221
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHh------CCCCCCCEEEEEEeCCCCCCCCC
Q 003222 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTEL------GVRFEDSISMLVSSAVPEGKGVS 647 (838)
Q Consensus 574 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~------g~~~~~g~~i~i~s~iP~g~GLg 647 (838)
+... + + .-.||+..++..+.+.. |.. .|++|.+.++||.|+|||
T Consensus 56 -------~~~~-------~------------~--~~~nlv~~a~~~~~~~~~~~~~~g~~--~g~~i~i~~~IP~g~GLG 105 (283)
T 2ww4_A 56 -------PVEG-------V------------E--HEDNLIVRAARLLMKTAADSGRLPTG--SGANISIDKRLPMGGGLG 105 (283)
T ss_dssp -------CBTT-------B------------C--GGGSHHHHHHHHHHHHHHHTTCSCTT--CEEEEEEECCCC-CTTSC
T ss_pred -------CCCC-------C------------C--CcccHHHHHHHHHHHHhhhhcccCCC--CceEEEEEeCCCCCCCcc
Confidence 0001 0 0 01578888888777665 653 699999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEE
Q 003222 648 SSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRF 727 (838)
Q Consensus 648 SSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~ 727 (838)
||||.++|++.|++.++|.++++++++++|+++|. |..++.+||. .+.... .+...++++| ++.+
T Consensus 106 sSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~----------dv~~~~~gg~---~~~~g~-g~~~~~l~~~-~~~~ 170 (283)
T 2ww4_A 106 GGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGA----------DVPVFVRGHA---AFAEGV-GEILTPVDPP-EKWY 170 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCT----------THHHHHHTBC---EEEETT-TTEEEECCCC-CCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----------CHHHhhcCCe---EEEEec-CccceEcCCC-CcEE
Confidence 99999999999999999999999999999998772 8888999984 333223 3333566666 6888
Q ss_pred EEEeCCCCCcC
Q 003222 728 WGIDSGIRHSV 738 (838)
Q Consensus 728 vi~~s~~~~~~ 738 (838)
+++++++..++
T Consensus 171 vl~~p~~~~sT 181 (283)
T 2ww4_A 171 LVAHPGVSIPT 181 (283)
T ss_dssp EEECCSCCCCH
T ss_pred EEEeCCCCCch
Confidence 99999887653
No 40
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.71 E-value=8.7e-17 Score=171.39 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=130.1
Q ss_pred eEEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 003222 497 IFVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (838)
Q Consensus 497 ~~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (838)
++.++||||||| +|+|.| |+++.++.++|++++++ +.+ +.. +++.+
T Consensus 4 m~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~~~---------------------i~i~~----- 54 (271)
T 2v8p_A 4 MIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--EGV---------------------LRVET----- 54 (271)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--ESS---------------------CEEEE-----
T ss_pred eEEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--CCe---------------------EEEEe-----
Confidence 677899999999 899999 99999999999999999 886 222 22221
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHH
Q 003222 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651 (838)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 651 (838)
+.+ ...|.|++..++..+.+..|.. .|++|.+.++||.|+|||||||
T Consensus 55 -----------~~~--------------------~~~~~nlv~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGsSsa 101 (271)
T 2v8p_A 55 -----------NIG--------------------IPQEENLVYKGLREFERITGIE--INYSIFIQKNIPPGAGLGGGSS 101 (271)
T ss_dssp -----------SSC--------------------CCTTTCHHHHHHHHHHHHHCCC--CCEEEEEECCSCTTSSSCHHHH
T ss_pred -----------CCC--------------------CCCCchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCCCCCchHHH
Confidence 010 0246889988888887777764 6999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEe
Q 003222 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (838)
Q Consensus 652 ~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~ 731 (838)
..+|++.|++.++|.++++++++++|+++|. |..++.+||. .+. ....+..+++++|.++.+++++
T Consensus 102 ~a~a~l~al~~l~~~~l~~~el~~la~~~e~----------dv~~~~~gg~---~~~-~g~g~~~~~l~~~~~~~~vl~~ 167 (271)
T 2v8p_A 102 NLAVVLKKVNELLGSPLSEEELRELVGSISA----------DAPFFLLGKS---AIG-RGKGEVLEPVETEISGKITLVI 167 (271)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHCT----------TTGGGGTCSE---EEE-ETTTTEEEECCCCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----------CHHHHhcCCe---EEE-EEcCCEEEEccCCCCcEEEEEe
Confidence 9999999999999999999999999999972 6677888883 333 2223333566644478899999
Q ss_pred CCCCCc
Q 003222 732 SGIRHS 737 (838)
Q Consensus 732 s~~~~~ 737 (838)
+++..+
T Consensus 168 p~~~~s 173 (271)
T 2v8p_A 168 PQVSSS 173 (271)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987644
No 41
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=157.34 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=111.6
Q ss_pred cChHHHHHHhCCCCCCcEEEEEcCCCCc--hh----hhHHhhCCCCcEEEE-eCCCC-CCCCCCeEECCCCCCHHHHH--
Q 003222 208 KSRKEVRKELGIEDDVKLLILNFGGQPA--GW----KLKEEYLPSGWKCLV-CGASD-SQLPPNFIKLPKDAYTPDFM-- 277 (838)
Q Consensus 208 ~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~----~ll~~l~~~~~~~vv-~G~~~-~~lp~nv~~~~~~~~~pdlL-- 277 (838)
+.++++.+++...+++++||+++||.+. .. .+++++...++.+++ +|... ..+++||++.+|.+. .++|
T Consensus 6 ~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~-~~~l~~ 84 (170)
T 2o6l_A 6 PLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQ-NDLLGH 84 (170)
T ss_dssp CCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCCTTCCTTEEEESSCCH-HHHHTS
T ss_pred CCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCcccCCCcEEEecCCCH-HHHhcC
Confidence 4567888888755577899999999863 22 334455444565554 44433 237889999887654 5788
Q ss_pred hhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 278 AASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 278 a~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+.||+||+|+|++|++|++++|+|+|++| .+.||..|++++++.|+|+.++..+++++.+.++|.++++++
T Consensus 85 ~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p--~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 85 PKTRAFITHGGANGIYEAIYHGIPMVGIP--LFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155 (170)
T ss_dssp TTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCH
T ss_pred CCcCEEEEcCCccHHHHHHHcCCCEEecc--chhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCH
Confidence 78999999999999999999999999999 468999999999999999999988888899999999999754
No 42
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.64 E-value=3.1e-16 Score=170.99 Aligned_cols=187 Identities=10% Similarity=0.054 Sum_probs=126.6
Q ss_pred ceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 496 ~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
....++|||||+|+|+|+||++|+++|+...+++.+. ..+++-.++ ..+.+ .
T Consensus 7 ~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~-~l~~~~~v~---------------------~~~~~--~---- 58 (317)
T 2gs8_A 7 NVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE-NMFTTTSVS---------------------FLPDT--A---- 58 (317)
T ss_dssp CEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEE---------------------ECCTT--C----
T ss_pred CcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEee-cccceEEEE---------------------EEcCC--C----
Confidence 4568899999999999999999999999888876663 233221111 10100 0
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVA 655 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va 655 (838)
+..++.++. .+ ...+|.|+++.++..+.+..+ .|++|.+.++||.|+|||||||.++|
T Consensus 59 ~~~~~~~~g-----~~-------------~~~~~~n~v~~~~~~~~~~~~----~g~~I~i~~~IP~~~GLGSSaA~~vA 116 (317)
T 2gs8_A 59 TSDQFYING-----IL-------------QNDEEHTKISAIIDQFRQPGQ----AFVKMETQNNMPTAAGLSSSSSGLSA 116 (317)
T ss_dssp CSCEEEETT-----EE-------------CCHHHHHHHHHHHTTTCCTTC----CCEEEEEECCSCGGGCCCHHHHHHHH
T ss_pred CeEEEEECC-----Cc-------------cccchHHHHHHHHHHHHHhcC----CCeEEEEeCCCCCCCchHHHHHHHHH
Confidence 001111111 00 112689999988776542222 58999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeE--EEEEeCC
Q 003222 656 SMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIR--FWGIDSG 733 (838)
Q Consensus 656 ~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~--~vi~~s~ 733 (838)
++.|++.++|+++++++++++|+++| | +...+.+||. .+...+.... ...++|.++. +++++++
T Consensus 117 ~~~al~~l~g~~ls~~el~~la~~~~----G------~~~~~~~GG~---~~~~~~~~~~-~~~~~~~~~~~~v~i~~~~ 182 (317)
T 2gs8_A 117 LVKACDQLFDTQLDQKALAQKAKFAS----G------SSSRSFFGPV---AAWDKDSGAI-YKVETDLKMAMIMLVLNAA 182 (317)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHH----G------GGGGGGSCSE---EEECTTTCCE-EECCCCCCEEEEEEECCCS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhc----c------hhHhhhcCCh---heEeeCCCce-eEEEccccccEEEEEEECC
Confidence 99999999999999999999999775 3 2345789983 3332222222 2334454555 4445887
Q ss_pred CCCcCCCCchhhH
Q 003222 734 IRHSVGGADYGSV 746 (838)
Q Consensus 734 ~~~~~~~~~y~~~ 746 (838)
.++..++++|+.+
T Consensus 183 ~~~~~tt~~~~~~ 195 (317)
T 2gs8_A 183 KKPISSREGMKLC 195 (317)
T ss_dssp SCCSCHHHHHHHH
T ss_pred CcCcccHHHHHHH
Confidence 7776666777643
No 43
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.58 E-value=1.3e-14 Score=154.93 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=122.9
Q ss_pred EEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 003222 498 FVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (838)
Q Consensus 498 ~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (838)
+.+ ||||||| .|+|.| |++..++.++|+++.++.+.+ + .++ +..
T Consensus 2 i~~-aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~--~-~~~---------------------i~~------ 50 (275)
T 1uek_A 2 ERL-APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEP--V-SSG---------------------LHF------ 50 (275)
T ss_dssp EEE-EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEE--E-SSC---------------------EEE------
T ss_pred cee-ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEE--C-cEE---------------------EEE------
Confidence 345 9999999 699999 999999999999999998876 2 221 111
Q ss_pred CCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHH
Q 003222 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (838)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (838)
+- + + + ..|++..++..+.+..|.. .|++|.+.++||.|+|||||||.
T Consensus 51 --------~~-~-------~------------~---~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGSSsa~ 97 (275)
T 1uek_A 51 --------QG-P-------Y------------G---RENLAYRAASLYLEAAGQP--GGVRILLEKRIPEGAGLGGGSSD 97 (275)
T ss_dssp --------ES-T-------T------------G---GGSHHHHHHHHHHHHTTCC--CEEEEEEECCSCSSSSSCHHHHH
T ss_pred --------cC-C-------C------------C---CccHHHHHHHHHHHHhCCC--CCEEEEEecCCCCcCcccHHHHH
Confidence 00 1 0 0 1467888888777666753 69999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeC
Q 003222 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDS 732 (838)
Q Consensus 653 ~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s 732 (838)
.+|++.|++.++|.++ +++++|.++| .|..++.+||. .+.... .+...+++ ++++.++++++
T Consensus 98 a~a~l~al~~l~~~~l---~l~~la~~~g----------~dv~~~~~Gg~---~~~~g~-g~~~~~l~-~~~~~~vl~~p 159 (275)
T 1uek_A 98 AAQVLLALQALYPAEV---DLFALARTLG----------ADVPFFLLGRG---AEARGV-GERLKPLA-LPPVPAVVFFP 159 (275)
T ss_dssp HHHHHHHHHHHSCSCC---CHHHHHHHHC----------TTHHHHHHCSE---EEEETT-TTEEEEEC-CCCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCh---HHHHHHHHhC----------CChHHHhcCCe---EEEEcc-CceeEEcc-CCCcEEEEEeC
Confidence 9999999999999988 8999999876 28899999994 333323 33346777 56889999999
Q ss_pred CCCCcC
Q 003222 733 GIRHSV 738 (838)
Q Consensus 733 ~~~~~~ 738 (838)
++..++
T Consensus 160 ~~~~sT 165 (275)
T 1uek_A 160 GLRVPT 165 (275)
T ss_dssp CCCCCH
T ss_pred CCCCch
Confidence 876553
No 44
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.51 E-value=3e-13 Score=146.29 Aligned_cols=172 Identities=15% Similarity=0.185 Sum_probs=131.4
Q ss_pred eEEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 003222 497 IFVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (838)
Q Consensus 497 ~~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (838)
.+.++||+++|| .|.+.| |+.--.+-++|+++-.+.+.+.++. .+.+...
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~---------------------~i~~~g~---- 59 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVL---------------------SLELVGE---- 59 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSC---------------------EEEEEST----
T ss_pred cEEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCC---------------------EEEEeCC----
Confidence 357899999999 999998 8887777789999988888775432 1222210
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHH
Q 003222 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651 (838)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 651 (838)
. ...+ + .+..|++..++..+.+..|.. .|++|.+.++||.|+|||||||
T Consensus 60 ------~---~~~~-------------------p-~~~~Nlv~~A~~~l~~~~g~~--~~~~i~i~~~iP~~~GLGsssa 108 (306)
T 3pyf_A 60 ------G---ADQL-------------------P-TDERNLAWQAAELMAEHVGRA--PDVSIMIDKSIPVAGGMAGGSA 108 (306)
T ss_dssp ------T---GGGS-------------------C-CSTTSHHHHHHHHHHHHTTCC--CCEEEEEEECSCTTSSSCHHHH
T ss_pred ------C---ccCC-------------------C-CCCccHHHHHHHHHHHHhCCC--CCeEEEEecCCCCCCCcchHHH
Confidence 0 0010 0 012577777777777777764 5999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEe
Q 003222 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (838)
Q Consensus 652 ~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~ 731 (838)
..+|++.|++.++|.++++++++++|.++| .|..++++||. .+. ....+...+++.+.++.+++++
T Consensus 109 ~a~a~l~al~~~~~~~l~~~~l~~la~~~~----------~Dv~~~~~Gg~---~~~-~g~ge~~~~l~~~~~~~~vl~~ 174 (306)
T 3pyf_A 109 DAAAVLVAMNSLWELNVPRRDLRMLAARLG----------SDVPFALHGGT---ALG-TGRGEELATVLSRNTFHWVLAF 174 (306)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHC----------TTHHHHHHBSE---EEE-CSSSSCCEEECCSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhC----------CCCceeecCce---EEE-EeeCCeEEEccCCCCcEEEEEE
Confidence 999999999999999999999999999887 38889999993 332 3223334677777789999999
Q ss_pred CCCCCcC
Q 003222 732 SGIRHSV 738 (838)
Q Consensus 732 s~~~~~~ 738 (838)
+++..++
T Consensus 175 P~~~vsT 181 (306)
T 3pyf_A 175 ADSGLLT 181 (306)
T ss_dssp CSSCCCH
T ss_pred CCCCCcH
Confidence 9987654
No 45
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.51 E-value=8.1e-14 Score=152.47 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=110.0
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
..++||+||+|+|+|+||+++.+||+...++..+. .++.+..+ + .+. ++.. ..
T Consensus 10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~-~~~~~~~v---------------------~-~~~--~~~~--~~ 62 (332)
T 3qt5_A 10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD-RFYTETKV---------------------T-FDP--DFTE--DC 62 (332)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEE---------------------E-EET--TCSS--CE
T ss_pred EEEEecCcEEEEeeeeeccCCccccCCCceEEEec-CCCCeeEE---------------------E-EcC--CCCc--cE
Confidence 47899999999999999999999999998887775 22322111 1 010 0000 01
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
+.++. .. ...+|.|++..++..+.+..+.. .|++|.+.++||.++|||||||..+|++
T Consensus 63 --~~i~g-----~~-------------~~~~~~n~v~~~~~~~~~~~~~~--~~~~i~~~~~iP~~~GLgSSaa~~~a~~ 120 (332)
T 3qt5_A 63 --LILNG-----NE-------------VNAKEKEKIQNYMNIVRDLAGNR--LHARIESENYVPTAAGLASSASAYAALA 120 (332)
T ss_dssp --EEETT-----EE-------------CCHHHHHHHHHHHHHHHHHHTCC--CEEEEEEEEESCGGGTCCCHHHHHHHHH
T ss_pred --EEECC-----cc-------------CCcchHHHHHHHHHHHHHhcCCC--CCEEEEEecCCCCCCCcchHHHHHHHHH
Confidence 11111 00 11347999999988887777764 6899999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
.|++.++|+++++.+++++|+++| | |-..+++||.
T Consensus 121 ~a~~~l~~~~l~~~el~~la~~~~--------g--~~~~~~~GG~ 155 (332)
T 3qt5_A 121 AACNEALSLNLSDTDLSRLARRGS--------G--SASRSIFGGF 155 (332)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHC--------G--GGGGGGSCSE
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhc--------C--CchhhhcCCe
Confidence 999999999999999999999874 2 4456889994
No 46
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.47 E-value=1.7e-13 Score=140.47 Aligned_cols=150 Identities=16% Similarity=0.099 Sum_probs=103.5
Q ss_pred hCCCCCCcEEEEEcCCCCchhhhH---------HhhCCCC-c-EEEEeCCCCC---C--------------CC-------
Q 003222 217 LGIEDDVKLLILNFGGQPAGWKLK---------EEYLPSG-W-KCLVCGASDS---Q--------------LP------- 261 (838)
Q Consensus 217 l~~~~~~~~Vlvs~Gs~~~~~~ll---------~~l~~~~-~-~~vv~G~~~~---~--------------lp------- 261 (838)
++.++++++|||++||...-.+++ +.+...+ + .++.+|.... . +|
T Consensus 22 ~~~~~~~~~VlVtgGS~~~~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 101 (224)
T 2jzc_A 22 LEGIIEEKALFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCG 101 (224)
T ss_dssp --CCCCSCCEEEECCSCCSCHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSSCTTCTT
T ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchhhHHHHHHhhhcccccccccccccccc
Confidence 455567889999999985322221 3443444 4 4456786543 1 12
Q ss_pred ------------CCeEECCCCCCHHHHHh-hcCEEEecCChhhHHHHHHcCCcEEEEeCCC--CCChHHHHHHHHHcCcE
Q 003222 262 ------------PNFIKLPKDAYTPDFMA-ASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEPFLRNMLEFYQGG 326 (838)
Q Consensus 262 ------------~nv~~~~~~~~~pdlLa-~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~--~~EQ~~Na~~l~~~G~g 326 (838)
.++.+++|.+.|+++|+ .||++|||||++|++|++++|+|+|++|.+. ..+|..||+++++.|++
T Consensus 102 ~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~AdlvIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~ 181 (224)
T 2jzc_A 102 DTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYV 181 (224)
T ss_dssp CSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSCEEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCC
T ss_pred ccccccccccCCceEEEeeccchHHHHHHhcCCEEEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCE
Confidence 14567899899999999 9999999999999999999999999999753 24699999999999999
Q ss_pred EEEecCCCChhhHHHHHHHHhhCCCCcc-CCCCHHHHHHHHHHHHh
Q 003222 327 VEMIRRDLLTGHWKPYLERAISLKPCYE-GGINGGEVAAHILQETA 371 (838)
Q Consensus 327 ~~l~~~~~~~~~l~~~l~~ll~~~~~~~-~~~~g~~~~a~~i~~~~ 371 (838)
+.++. +.+.++|.++......+. ..+.+....++.|.+.+
T Consensus 182 ~~~~~-----~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 222 (224)
T 2jzc_A 182 WSCAP-----TETGLIAGLRASQTEKLKPFPVSHNPSFERLLVETI 222 (224)
T ss_dssp CEECS-----CTTTHHHHHHHHTTCCCCSCCCSSSCTHHHHHHHHC
T ss_pred EEcCH-----HHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHh
Confidence 87743 455677777733222222 12324456666666653
No 47
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.28 E-value=3.6e-11 Score=135.39 Aligned_cols=124 Identities=14% Similarity=0.076 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHhCC------CC----CCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003222 610 AAYVAGTILVLMTELGV------RF----EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQK 679 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~------~~----~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~ 679 (838)
.+++..++..+.+..+. .+ ..|++|.+.++||.++|||||||..+|++.|++.++|+++++++|+++|..
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~ 171 (416)
T 1fi4_A 92 NERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARK 171 (416)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 45677777666544443 00 258999999999999999999999999999999999999999999999987
Q ss_pred HHhhhcCCCCChhhHHHhhcCCCCeEEEEEecC-----Cceeeeecc---CCCeE--EEEEeCCCCCcCCCCchhhH
Q 003222 680 VENHIVGAPCGVMDQMASACGEANKLLAMVCQP-----AELLGVVEI---PSHIR--FWGIDSGIRHSVGGADYGSV 746 (838)
Q Consensus 680 ~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~-----~~~~~~v~~---~~~~~--~vi~~s~~~~~~~~~~y~~~ 746 (838)
.+ | +...+++||. +..+... ..+..+++. .+++. +++.+++.++...++.|+.+
T Consensus 172 g~----G------s~~~sl~GG~---v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~ 235 (416)
T 1fi4_A 172 GS----G------SACRSLFGGY---VAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLT 235 (416)
T ss_dssp HH----G------GGGGGGSSSE---EEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHH
T ss_pred cC----C------chheEeeCCc---EEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHH
Confidence 65 2 3456889994 3333221 112234432 13554 56678877766655666654
No 48
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.27 E-value=8.4e-11 Score=130.35 Aligned_cols=295 Identities=13% Similarity=0.058 Sum_probs=161.3
Q ss_pred CceEEEEEeecCC---CcccHHHHHHHHHHHHHCCCeEEEEeCCCCccc-ccccCCCceeeeeeccCCCcccccccccCh
Q 003222 13 SKHLVFAYYVTGH---GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF-TSEIQSPRLFIRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 13 m~~~~Il~~v~g~---G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~-~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (838)
|++|+|++++... ..|+...+..++++| +||+|++++....... .......++.+.... .. .....
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~ 71 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWP--RS------VMLPT 71 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEES--SS------SCCSC
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEcc--cc------ccccc
Confidence 4557777776522 368888899999999 6999999987643211 111011122222210 00 00000
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-Cc--hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchH
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VP--VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHR 165 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~--~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~ 165 (838)
........+++++.+||+|+... .+ ....+++..++|.+.++-.+....+.. .. ...
T Consensus 72 ---------------~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~~----~~~ 131 (394)
T 3okp_A 72 ---------------PTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSM-LP----GSR 131 (394)
T ss_dssp ---------------HHHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHHTT-SH----HHH
T ss_pred ---------------hhhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhhhh-cc----hhh
Confidence 01223345678899999999864 22 334456788998544332221100000 00 000
Q ss_pred HHHHHHHhhccccceEEecCCC--------CCCCCCCceeecCcccccC----CcChHHHHHHhCCCCCCcEEEEEcCCC
Q 003222 166 SIVWQIAEDYSHCEFLIRLPGY--------CPMPAFRDVIDVPLVVRRL----HKSRKEVRKELGIEDDVKLLILNFGGQ 233 (838)
Q Consensus 166 ~i~~~l~~~y~~~d~ll~~~~~--------~~~p~~~~v~~ip~~~~~~----~~~~~~~r~~l~~~~~~~~Vlvs~Gs~ 233 (838)
.+ ....+..++.++..... ...+....+++.|+..... ...+.++++.++++++. .++++.|+.
T Consensus 132 ~~---~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~ 207 (394)
T 3okp_A 132 QS---LRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTT-PVIACNSRL 207 (394)
T ss_dssp HH---HHHHHHHCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTC-CEEEEESCS
T ss_pred HH---HHHHHHhCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCc-eEEEEEecc
Confidence 00 01111222222211000 0000101122222222111 11245778889886444 456777776
Q ss_pred Cch---hhhHHh---hC--CCCcEEEEeCCCCCC---------CCCCeEECCCC--CCHHHHHhhcCEEEe---------
Q 003222 234 PAG---WKLKEE---YL--PSGWKCLVCGASDSQ---------LPPNFIKLPKD--AYTPDFMAASDCMLG--------- 285 (838)
Q Consensus 234 ~~~---~~ll~~---l~--~~~~~~vv~G~~~~~---------lp~nv~~~~~~--~~~pdlLa~adl~It--------- 285 (838)
... ..+++. +. .+++.++++|..... +.+||++++++ +.++++|+.||++|.
T Consensus 208 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~ 287 (394)
T 3okp_A 208 VPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGL 287 (394)
T ss_dssp CGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGT
T ss_pred ccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccc
Confidence 542 223332 22 257888888875421 35789999988 467799999999997
Q ss_pred --cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 286 --KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 286 --~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
-+..+++.||+++|+|+|+.+.....|. +.. |.|..++..+ ++.+.++|.++++++
T Consensus 288 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~------i~~-~~g~~~~~~d--~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 288 DVEGLGIVYLEAQACGVPVIAGTSGGAPET------VTP-ATGLVVEGSD--VDKLSELLIELLDDP 345 (394)
T ss_dssp BCCSSCHHHHHHHHTTCCEEECSSTTGGGG------CCT-TTEEECCTTC--HHHHHHHHHHHHTCH
T ss_pred cccccCcHHHHHHHcCCCEEEeCCCChHHH------Hhc-CCceEeCCCC--HHHHHHHHHHHHhCH
Confidence 4555789999999999999875444332 333 4788887655 578999999998765
No 49
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.26 E-value=1.9e-10 Score=129.86 Aligned_cols=130 Identities=17% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC---C-CCcEEEEeCC----CCC-C----------CCCCeEE
Q 003222 212 EVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL---P-SGWKCLVCGA----SDS-Q----------LPPNFIK 266 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~---~-~~~~~vv~G~----~~~-~----------lp~nv~~ 266 (838)
.+++.++++.++ .++++.|+.... ..++++ +. + .++.++++|. ... . +.+||++
T Consensus 232 ~~r~~~~~~~~~-~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~ 310 (438)
T 3c48_A 232 RSRRELGIPLHT-KVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 310 (438)
T ss_dssp HHHHHTTCCSSS-EEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEE
T ss_pred hhHHhcCCCCCC-cEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEE
Confidence 478888886454 466777877643 123332 21 1 2678888887 221 1 4578999
Q ss_pred CCCC--CCHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 003222 267 LPKD--AYTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (838)
Q Consensus 267 ~~~~--~~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~ 340 (838)
++++ +.++++|+.||++|... ..+++.||+++|+|+|+.+.. ...+.++..+.|+.++..+ ++.+.
T Consensus 311 ~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~------~~~e~i~~~~~g~~~~~~d--~~~la 382 (438)
T 3c48_A 311 LDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVG------GLPIAVAEGETGLLVDGHS--PHAWA 382 (438)
T ss_dssp ECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCT------THHHHSCBTTTEEEESSCC--HHHHH
T ss_pred cCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCC------ChhHHhhCCCcEEECCCCC--HHHHH
Confidence 9988 45779999999999743 236899999999999998742 2344566666888887655 57899
Q ss_pred HHHHHHhhCC
Q 003222 341 PYLERAISLK 350 (838)
Q Consensus 341 ~~l~~ll~~~ 350 (838)
++|.++++++
T Consensus 383 ~~i~~l~~~~ 392 (438)
T 3c48_A 383 DALATLLDDD 392 (438)
T ss_dssp HHHHHHHHCH
T ss_pred HHHHHHHcCH
Confidence 9999999865
No 50
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.24 E-value=7.7e-10 Score=123.22 Aligned_cols=301 Identities=14% Similarity=0.101 Sum_probs=158.0
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHH
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASL 92 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l 92 (838)
|+.-....+.+.. .|.-..+..++++|+++||+|++++......... ..+++.+.... . ........... .
T Consensus 14 ~~~~~~~~~~p~~-GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--~~~~i~~~~~~--~--~~~~~~~~~~~-~- 84 (394)
T 2jjm_A 14 MKLKIGITCYPSV-GGSGVVGTELGKQLAERGHEIHFITSGLPFRLNK--VYPNIYFHEVT--V--NQYSVFQYPPY-D- 84 (394)
T ss_dssp -CCEEEEECCC---CHHHHHHHHHHHHHHHTTCEEEEECSSCC----C--CCTTEEEECCC--C--C----CCSCCH-H-
T ss_pred heeeeehhcCCCC-CCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccc--cCCceEEEecc--c--ccccccccccc-c-
Confidence 4433333333443 4778888999999999999999998753221111 11233332210 0 00000000000 0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCC-ch--HHHHHH-Hh--CCcEEEEecCchhHHHHhhhhhcccchHH
Q 003222 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVV-PV--ACRAAA-DA--GIRSVCVTNFSWDFIYAEYVMAAGHHHRS 166 (838)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~-~~--~~~aA~-~l--gIP~V~is~~~~~~i~~~~~~~~~~~~~~ 166 (838)
........+++++.+||+|++... +. ...+++ .. ++|.|...+-.+.. ..... .....
T Consensus 85 -----------~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~~~~~-~~~~~ 148 (394)
T 2jjm_A 85 -----------LALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT----VLGSD-PSLNN 148 (394)
T ss_dssp -----------HHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH----TTTTC-TTTHH
T ss_pred -----------HHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc----ccCCC-HHHHH
Confidence 011233456678899999998752 22 223333 33 59987653211100 00000 00111
Q ss_pred HHHHHHhhccccceEEecCCC--------CCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch-
Q 003222 167 IVWQIAEDYSHCEFLIRLPGY--------CPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG- 236 (838)
Q Consensus 167 i~~~l~~~y~~~d~ll~~~~~--------~~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~- 236 (838)
+.. ..+..++.++..... ...+....+++.|+.... ....+.++++.++++++.+ ++++.|+....
T Consensus 149 ~~~---~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~G~~~~~K 224 (394)
T 2jjm_A 149 LIR---FGIEQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEK-ILIHISNFRKVK 224 (394)
T ss_dssp HHH---HHHHHSSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---C-EEEEECCCCGGG
T ss_pred HHH---HHHhhCCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCCCCCCe-EEEEeecccccc
Confidence 111 111222322221100 000111122233332221 1123456788888754444 55677776642
Q ss_pred --hhhHHh---hC-CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEEe----cCChhhHHHH
Q 003222 237 --WKLKEE---YL-PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCMLG----KIGYGTVSEA 295 (838)
Q Consensus 237 --~~ll~~---l~-~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~It----~gG~~Tv~Ea 295 (838)
..++++ +. ..++.++++|..... +.+||.+.++.+.++++|+.||++|. -+..+++.||
T Consensus 225 g~~~li~a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EA 304 (394)
T 2jjm_A 225 RVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEA 304 (394)
T ss_dssp THHHHHHHHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHH
Confidence 223332 21 135788888865421 35789989988889999999999993 4455789999
Q ss_pred HHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 296 LAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 296 l~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+++|+|+|+.+.....|. ++..+.|+.++..+ ++.+.++|.++++++
T Consensus 305 ma~G~PvI~~~~~~~~e~------v~~~~~g~~~~~~d--~~~la~~i~~l~~~~ 351 (394)
T 2jjm_A 305 MACGVPCIGTRVGGIPEV------IQHGDTGYLCEVGD--TTGVADQAIQLLKDE 351 (394)
T ss_dssp HHTTCCEEEECCTTSTTT------CCBTTTEEEECTTC--HHHHHHHHHHHHHCH
T ss_pred HhcCCCEEEecCCChHHH------hhcCCceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 999999999986555443 44456788887665 478999999998765
No 51
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.23 E-value=5.5e-10 Score=125.53 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=91.0
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-ch---hhhHH---hhCC----CCcEEEEeCCCCCC-----------CCCCeEEC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQP-AG---WKLKE---EYLP----SGWKCLVCGASDSQ-----------LPPNFIKL 267 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~-~~---~~ll~---~l~~----~~~~~vv~G~~~~~-----------lp~nv~~~ 267 (838)
+.++++.++++++ .++++.|+.. .. ..+++ .+.. +++.++++|..... ++.++.+.
T Consensus 239 ~~~~~~~~~~~~~--~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~ 316 (439)
T 3fro_A 239 KKSLLSKFGMDEG--VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVIT 316 (439)
T ss_dssp HHHHHHHHTCCSC--EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEEC
T ss_pred HHHHHHHcCCCCC--cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEc
Confidence 4577888998644 6778888877 42 22333 2333 56788888876521 45445567
Q ss_pred CCCC--CHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHH
Q 003222 268 PKDA--YTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKP 341 (838)
Q Consensus 268 ~~~~--~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~ 341 (838)
++.+ .++++|+.||++|.- +-.+++.||+++|+|+|+.+.. ...+.++ .|.|..++..+ ++.+.+
T Consensus 317 g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~------~~~e~~~-~~~g~~~~~~d--~~~la~ 387 (439)
T 3fro_A 317 EMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVG------GLRDIIT-NETGILVKAGD--PGELAN 387 (439)
T ss_dssp SCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESST------HHHHHCC-TTTCEEECTTC--HHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCC------CcceeEE-cCceEEeCCCC--HHHHHH
Confidence 7654 366899999999953 2336899999999999998632 2334443 46898888766 578999
Q ss_pred HHHHHhh-CCC
Q 003222 342 YLERAIS-LKP 351 (838)
Q Consensus 342 ~l~~ll~-~~~ 351 (838)
+|.++++ ++.
T Consensus 388 ~i~~ll~~~~~ 398 (439)
T 3fro_A 388 AILKALELSRS 398 (439)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhcCHH
Confidence 9999998 553
No 52
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.20 E-value=2.4e-10 Score=128.28 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=96.7
Q ss_pred HHHHHHhC-CCCCCcEEEEEc---CCCCch-hhhHHh---hC--CCCcEEEEe-CCCCC---------CCCCCeEECCCC
Q 003222 211 KEVRKELG-IEDDVKLLILNF---GGQPAG-WKLKEE---YL--PSGWKCLVC-GASDS---------QLPPNFIKLPKD 270 (838)
Q Consensus 211 ~~~r~~l~-~~~~~~~Vlvs~---Gs~~~~-~~ll~~---l~--~~~~~~vv~-G~~~~---------~lp~nv~~~~~~ 270 (838)
+++++.++ +++++++|++++ |+.+.+ ..++++ +. .+++.+++. |.++. ...+||+++++.
T Consensus 217 ~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~l 296 (396)
T 3dzc_A 217 ATLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQ 296 (396)
T ss_dssp HHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCC
T ss_pred HHHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCC
Confidence 56778888 466778888887 333333 233333 22 246666654 64421 124689887766
Q ss_pred C--CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 271 A--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 271 ~--~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
. .++.+|+.||+||+.+| +.+.||+++|+|+|+++ ..++.+ .+.+.|.++.+.. +++.+.+++.++++
T Consensus 297 g~~~~~~l~~~ad~vv~~SG-g~~~EA~a~G~PvV~~~--~~~~~~----e~v~~G~~~lv~~---d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 297 QYLPFVYLMDRAHIILTDSG-GIQEEAPSLGKPVLVMR--ETTERP----EAVAAGTVKLVGT---NQQQICDALSLLLT 366 (396)
T ss_dssp CHHHHHHHHHHCSEEEESCS-GGGTTGGGGTCCEEECC--SSCSCH----HHHHHTSEEECTT---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCEEEECCc-cHHHHHHHcCCCEEEcc--CCCcch----HHHHcCceEEcCC---CHHHHHHHHHHHHc
Confidence 3 46699999999999998 55689999999999975 344442 2456788866543 36788999999997
Q ss_pred CCCCcc---------CCCCHHHHHHHHHH
Q 003222 349 LKPCYE---------GGINGGEVAAHILQ 368 (838)
Q Consensus 349 ~~~~~~---------~~~~g~~~~a~~i~ 368 (838)
++..+. ..++.++++++.|.
T Consensus 367 d~~~~~~m~~~~~~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 367 DPQAYQAMSQAHNPYGDGKACQRIADILA 395 (396)
T ss_dssp CHHHHHHHHTSCCTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCCcCChHHHHHHHHHh
Confidence 653211 35566666666553
No 53
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.19 E-value=3.8e-10 Score=126.92 Aligned_cols=148 Identities=11% Similarity=-0.014 Sum_probs=98.5
Q ss_pred HHHHHhCCCCCCcEEEEEcCCC---Cch-hhhHHh---hC--CCCcEEEEe-CCCCC---------CCCCCeEECCCCC-
Q 003222 212 EVRKELGIEDDVKLLILNFGGQ---PAG-WKLKEE---YL--PSGWKCLVC-GASDS---------QLPPNFIKLPKDA- 271 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~---~~~-~~ll~~---l~--~~~~~~vv~-G~~~~---------~lp~nv~~~~~~~- 271 (838)
+.++.+ ++++++++++|.. +.+ ..++++ +. .+++.+++. |+++. ...+||+++++..
T Consensus 216 ~~~~~l---~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~ 292 (403)
T 3ot5_A 216 PILENL---GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDA 292 (403)
T ss_dssp HHHHSC---TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCH
T ss_pred HHHHhc---cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCH
Confidence 455554 3567888876632 222 233332 22 246666654 54421 0246899888775
Q ss_pred -CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 272 -YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 272 -~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+++.+|++||++|+.+| +.+.||+++|+|+|+++. ..+++. +.+.|.++.+.. +++.+.+++.++++++
T Consensus 293 ~~~~~l~~~ad~vv~~SG-g~~~EA~a~g~PvV~~~~--~~~~~e----~v~~g~~~lv~~---d~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 293 IDFHNFLRKSYLVFTDSG-GVQEEAPGMGVPVLVLRD--TTERPE----GIEAGTLKLIGT---NKENLIKEALDLLDNK 362 (403)
T ss_dssp HHHHHHHHHEEEEEECCH-HHHHHGGGTTCCEEECCS--SCSCHH----HHHHTSEEECCS---CHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhcCEEEECCc-cHHHHHHHhCCCEEEecC--CCcchh----heeCCcEEEcCC---CHHHHHHHHHHHHcCH
Confidence 57799999999999987 334799999999999963 344433 356788877753 4678889999998765
Q ss_pred CCc---------cCCCCHHHHHHHHHHHHhc
Q 003222 351 PCY---------EGGINGGEVAAHILQETAI 372 (838)
Q Consensus 351 ~~~---------~~~~~g~~~~a~~i~~~~~ 372 (838)
..+ -..++.++++++.|.+++.
T Consensus 363 ~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 363 ESHDKMAQAANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHHSCCTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCcccCCcHHHHHHHHHHHHhC
Confidence 321 1467888889888888764
No 54
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.18 E-value=1.9e-09 Score=118.63 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=96.6
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhh---C---CCCcEEEEeCCCCCC----------CCCCeEECCCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY---L---PSGWKCLVCGASDSQ----------LPPNFIKLPKD 270 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l---~---~~~~~~vv~G~~~~~----------lp~nv~~~~~~ 270 (838)
++++++.++++++ +.++++.|+.... ..+++++ . .+++.++++|..... +.+||+++++.
T Consensus 183 ~~~~~~~~~~~~~-~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~v~~~g~~ 261 (374)
T 2iw1_A 183 REIYRQKNGIKEQ-QNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGR 261 (374)
T ss_dssp HHHHHHHTTCCTT-CEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHHHHHHHHHHTCGGGEEEESCC
T ss_pred HHHHHHHhCCCCC-CeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCHHHHHHHHHHcCCCCcEEECCCc
Confidence 4578888988644 4566777776542 2333332 1 136788888875431 35789999998
Q ss_pred CCHHHHHhhcCEEEe----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEe-cCCCChhhHHHHHHH
Q 003222 271 AYTPDFMAASDCMLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMI-RRDLLTGHWKPYLER 345 (838)
Q Consensus 271 ~~~pdlLa~adl~It----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~-~~~~~~~~l~~~l~~ 345 (838)
+.++++|+.||++|. -+..+++.||+++|+|+|+.+.... .+.++..+.|..+. ..+ .+.+.++|.+
T Consensus 262 ~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~------~e~i~~~~~g~~~~~~~~--~~~l~~~i~~ 333 (374)
T 2iw1_A 262 NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGY------AHYIADANCGTVIAEPFS--QEQLNEVLRK 333 (374)
T ss_dssp SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTT------THHHHHHTCEEEECSSCC--HHHHHHHHHH
T ss_pred ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCc------hhhhccCCceEEeCCCCC--HHHHHHHHHH
Confidence 889999999999996 3455789999999999999875433 34577788898887 444 5789999999
Q ss_pred HhhCC
Q 003222 346 AISLK 350 (838)
Q Consensus 346 ll~~~ 350 (838)
+++++
T Consensus 334 l~~~~ 338 (374)
T 2iw1_A 334 ALTQS 338 (374)
T ss_dssp HHHCH
T ss_pred HHcCh
Confidence 99765
No 55
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.15 E-value=1.3e-09 Score=122.35 Aligned_cols=300 Identities=13% Similarity=0.025 Sum_probs=163.7
Q ss_pred CCCceEEEEEeecCCC-cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChH
Q 003222 11 ASSKHLVFAYYVTGHG-FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 11 ~~m~~~~Il~~v~g~G-~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
+.|++|+|+++++... .|+-..+..++++|.++||+|++++......+..... . +... . .+. .......
T Consensus 36 ~~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~--~--~~~~-~-~~~---~~~~~~~- 105 (416)
T 2x6q_A 36 EKLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTK--T--FHNA-L-QGN---ESLKLTE- 105 (416)
T ss_dssp HTTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHH--H--HHHH-H-TTC---CSCCCCH-
T ss_pred hhhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhc--c--ccee-e-ccc---ccccccH-
Confidence 4578899988887654 5777888899999999999999887643211100000 0 0000 0 000 0001111
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHH-HHhCCcEEEEecCchhHHHHhhhhhcccchHHHH
Q 003222 90 ASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA-ADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIV 168 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA-~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~ 168 (838)
.....+. .......+++++.+||+|++........++ ....+|.|...+..+.... ....
T Consensus 106 ~~~~~~~--------~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~-----------~~~~ 166 (416)
T 2x6q_A 106 EMKELYL--------NVNRENSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLWRCHIDLSSPN-----------REFW 166 (416)
T ss_dssp HHHHHHH--------HHHHHHHHSSCGGGSSEEEEESSTTGGGGGGSCCCSCEEEECCSCCSSCC-----------HHHH
T ss_pred HHHHHHH--------HHHHHHHHHHhhcCCCEEEEeccchhhHHHHHHhcCCEEEEEccccCCcc-----------HHHH
Confidence 0011111 122233556778899999987532221111 1123888776432211000 0001
Q ss_pred HHHHhhccccceEE-ecCCCC--CCC-CCCceeecCccccc--C-Cc---ChHHHHHHhCCCCCCcEEEEEcCCCCch--
Q 003222 169 WQIAEDYSHCEFLI-RLPGYC--PMP-AFRDVIDVPLVVRR--L-HK---SRKEVRKELGIEDDVKLLILNFGGQPAG-- 236 (838)
Q Consensus 169 ~~l~~~y~~~d~ll-~~~~~~--~~p-~~~~v~~ip~~~~~--~-~~---~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-- 236 (838)
..+...+..++.++ ...... ..+ ....+++.|+.... + .. .+..+++.++++++++ ++++.|.....
T Consensus 167 ~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~vGrl~~~Kg 245 (416)
T 2x6q_A 167 EFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKP-IITQVSRFDPWKG 245 (416)
T ss_dssp HHHHHHHTTSSEEEESSGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSC-EEEEECCCCTTSC
T ss_pred HHHHHHHHhCCEEEEechHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCc-EEEEEeccccccC
Confidence 11112222333333 111100 011 11123333332211 1 11 2346788888875555 45666766542
Q ss_pred -hhhHHh---hC--CCCcEEEEeCCCCC----------------CCCCCeEECCCCC-----CHHHHHhhcCEEEecC--
Q 003222 237 -WKLKEE---YL--PSGWKCLVCGASDS----------------QLPPNFIKLPKDA-----YTPDFMAASDCMLGKI-- 287 (838)
Q Consensus 237 -~~ll~~---l~--~~~~~~vv~G~~~~----------------~lp~nv~~~~~~~-----~~pdlLa~adl~It~g-- 287 (838)
..++++ +. .+++.++++|.... .+.++|+++++.+ .++++|+.+|++|..+
T Consensus 246 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~ 325 (416)
T 2x6q_A 246 IFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIR 325 (416)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSS
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCc
Confidence 223332 21 25788888887631 0357899988654 4678999999999754
Q ss_pred --ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 288 --GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 288 --G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
..+++.||+++|+|+|+.+. ..+.+.++..+.|..++ +.+.+.++|.++++++
T Consensus 326 E~~~~~~lEAma~G~PvI~~~~------~g~~e~i~~~~~g~l~~----d~~~la~~i~~ll~~~ 380 (416)
T 2x6q_A 326 EGFGLTVTEAMWKGKPVIGRAV------GGIKFQIVDGETGFLVR----DANEAVEVVLYLLKHP 380 (416)
T ss_dssp CSSCHHHHHHHHTTCCEEEESC------HHHHHHCCBTTTEEEES----SHHHHHHHHHHHHHCH
T ss_pred CCCccHHHHHHHcCCCEEEccC------CCChhheecCCCeEEEC----CHHHHHHHHHHHHhCH
Confidence 34689999999999999863 24566666677888886 4678999999998765
No 56
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.12 E-value=1.5e-09 Score=120.16 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=99.0
Q ss_pred HHHHHhC-CCCCCcEEEEEcCCCC---ch-hhhHHh---hC--CCCcEEEEe-CCCCC---C------CCCCeEECCCC-
Q 003222 212 EVRKELG-IEDDVKLLILNFGGQP---AG-WKLKEE---YL--PSGWKCLVC-GASDS---Q------LPPNFIKLPKD- 270 (838)
Q Consensus 212 ~~r~~l~-~~~~~~~Vlvs~Gs~~---~~-~~ll~~---l~--~~~~~~vv~-G~~~~---~------lp~nv~~~~~~- 270 (838)
++++.++ +++++++++++.|... .+ ..++++ +. .+++.+++. |.... . ..+||+++++.
T Consensus 193 ~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~ 272 (384)
T 1vgv_A 193 ELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQE 272 (384)
T ss_dssp HHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCC
T ss_pred HHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 5666777 6556778888888654 22 223332 21 246666654 64321 0 13689885443
Q ss_pred -CCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 271 -AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 271 -~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
.+++++|+.||+||+.+| +++.||+++|+|+|+.+... .. ..+.+.|.|+.++. +++.+.++|.+++++
T Consensus 273 ~~~~~~~~~~ad~~v~~Sg-~~~lEA~a~G~PvI~~~~~~--~~----~e~v~~g~g~lv~~---d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 273 YLPFVWLMNHAWLILTDSG-GIQEEAPSLGKPVLVMRDTT--ER----PEAVTAGTVRLVGT---DKQRIVEEVTRLLKD 342 (384)
T ss_dssp HHHHHHHHHHCSEEEESSS-TGGGTGGGGTCCEEEESSCC--SC----HHHHHHTSEEEECS---SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcEEEECCc-chHHHHHHcCCCEEEccCCC--Cc----chhhhCCceEEeCC---CHHHHHHHHHHHHhC
Confidence 357799999999999886 45889999999999998422 22 12455678988865 468899999999876
Q ss_pred CCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 350 KPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 350 ~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
+..+. ......+++++.+.++.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 373 (384)
T 1vgv_A 343 ENEYQAMSRAHNPYGDGQACSRILEALKNNR 373 (384)
T ss_dssp HHHHHHHHSSCCTTCCSCHHHHHHHHHHHTC
T ss_pred hHHHhhhhhccCCCcCCCHHHHHHHHHHHHH
Confidence 53110 34567777777777764
No 57
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.11 E-value=1.8e-09 Score=116.23 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=74.5
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV 709 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d 709 (838)
.|++|.+.++||.++|||||||..+|++.|++.++|.++++++++++|.++| |.+ .|-.++.+||. .+ .
T Consensus 70 ~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~e----g~~---ddv~~~~~GG~---~~-~ 138 (298)
T 3hul_A 70 TPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE----GHP---DNVAPAVLGNW---VV-G 138 (298)
T ss_dssp CCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH----SCS---TTHHHHHHCSE---EE-E
T ss_pred CceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc----CCc---ccCcccccCCE---EE-E
Confidence 6999999999999999999999999999999999999999999999999999 333 23346779994 22 2
Q ss_pred ecCCcee--eeeccCCCeEEEEEeCCCCCcC
Q 003222 710 CQPAELL--GVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 710 ~~~~~~~--~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
....+.. .++++| ++.++++..+...++
T Consensus 139 ~g~ge~~~~~~~~~p-~~~~vlv~p~~~~sT 168 (298)
T 3hul_A 139 AKLDGEDFYVRHLFP-DCALIAFIPKAELLT 168 (298)
T ss_dssp EEETTEEEEEEECCC--CEEEEEECCCCCC-
T ss_pred EeCCCcEEEEEcCCC-CeEEEEEECCCCCCc
Confidence 2222222 255655 488888887766543
No 58
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.02 E-value=3.1e-08 Score=114.05 Aligned_cols=131 Identities=17% Similarity=0.059 Sum_probs=90.1
Q ss_pred HHHHHHhC-----CCCCCcEEEEEcCCCCch---hhhHHhhC------CCCcEEEEeCC--CC--------------C--
Q 003222 211 KEVRKELG-----IEDDVKLLILNFGGQPAG---WKLKEEYL------PSGWKCLVCGA--SD--------------S-- 258 (838)
Q Consensus 211 ~~~r~~l~-----~~~~~~~Vlvs~Gs~~~~---~~ll~~l~------~~~~~~vv~G~--~~--------------~-- 258 (838)
.++++.++ ++.+.+ ++++.|..... ..+++++. +..+.++++|. .. .
T Consensus 245 ~~~r~~~~~~~~~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~ 323 (499)
T 2r60_A 245 AKITKYLERDLGSERMELP-AIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGK 323 (499)
T ss_dssp HHHHHHHHHHSCGGGTTSC-EEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCCc-EEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHH
Confidence 56777777 654554 56788877653 23334321 12346777887 11 1
Q ss_pred --------CCCCCeEECCCC--CCHHHHHhhc----CEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 003222 259 --------QLPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (838)
Q Consensus 259 --------~lp~nv~~~~~~--~~~pdlLa~a----dl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l 320 (838)
.+.++|++++++ +.++++|+.| |++|.-. | .+++.||+++|+|+|+.... ...+.+
T Consensus 324 l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~------g~~e~v 397 (499)
T 2r60_A 324 IIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNG------GPAEIL 397 (499)
T ss_dssp HHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSB------HHHHHT
T ss_pred HHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCC------CHHHHh
Confidence 146789999987 4677999999 9999532 2 35899999999999998632 345556
Q ss_pred HHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 321 EFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 321 ~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.....|..++..+ ++.|.++|.++++++
T Consensus 398 ~~~~~g~l~~~~d--~~~la~~i~~ll~~~ 425 (499)
T 2r60_A 398 DGGKYGVLVDPED--PEDIARGLLKAFESE 425 (499)
T ss_dssp GGGTSSEEECTTC--HHHHHHHHHHHHSCH
T ss_pred cCCceEEEeCCCC--HHHHHHHHHHHHhCH
Confidence 6666788887665 478999999998765
No 59
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.00 E-value=2.4e-09 Score=118.46 Aligned_cols=141 Identities=13% Similarity=-0.023 Sum_probs=91.7
Q ss_pred CCcEEEEEcCCCCc--h-hhhHHh---hC--CCCcEEEE-eCCCCC--C-------CCCCeEECCCCC--CHHHHHhhcC
Q 003222 222 DVKLLILNFGGQPA--G-WKLKEE---YL--PSGWKCLV-CGASDS--Q-------LPPNFIKLPKDA--YTPDFMAASD 281 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~--~-~~ll~~---l~--~~~~~~vv-~G~~~~--~-------lp~nv~~~~~~~--~~pdlLa~ad 281 (838)
++++|+++.|.... + ..++++ +. .+++.+++ +|.... . ..++|+++++.. +++++|+.||
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad 276 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASL 276 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEE
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCc
Confidence 45677777774321 2 223332 21 24566665 475431 0 135898885443 4679999999
Q ss_pred EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc-------
Q 003222 282 CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------- 354 (838)
Q Consensus 282 l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~------- 354 (838)
+||+.+| +.+.||+++|+|+|+.+.. .+++. +.+.|.|+.+. . +++.+.++|.++++++..+.
T Consensus 277 ~~v~~S~-g~~lEA~a~G~PvI~~~~~--~~~~~----~~~~g~g~lv~-~--d~~~la~~i~~ll~d~~~~~~~~~~~~ 346 (376)
T 1v4v_A 277 LLVTDSG-GLQEEGAALGVPVVVLRNV--TERPE----GLKAGILKLAG-T--DPEGVYRVVKGLLENPEELSRMRKAKN 346 (376)
T ss_dssp EEEESCH-HHHHHHHHTTCCEEECSSS--CSCHH----HHHHTSEEECC-S--CHHHHHHHHHHHHTCHHHHHHHHHSCC
T ss_pred EEEECCc-CHHHHHHHcCCCEEeccCC--Ccchh----hhcCCceEECC-C--CHHHHHHHHHHHHhChHhhhhhcccCC
Confidence 9999885 4567999999999998632 23322 34668888775 2 46789999999997652211
Q ss_pred --CCCCHHHHHHHHHHHHhc
Q 003222 355 --GGINGGEVAAHILQETAI 372 (838)
Q Consensus 355 --~~~~g~~~~a~~i~~~~~ 372 (838)
.....++++++.+.+++.
T Consensus 347 ~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 347 PYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp SSCCSCHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHhc
Confidence 345778888888887764
No 60
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=98.97 E-value=1e-09 Score=119.72 Aligned_cols=260 Identities=15% Similarity=0.099 Sum_probs=145.4
Q ss_pred CceEEEEEeecC---------------CCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCC
Q 003222 13 SKHLVFAYYVTG---------------HGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCG 77 (838)
Q Consensus 13 m~~~~Il~~v~g---------------~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g 77 (838)
|+.|+|+++... .+.|.-.....++++|.++||+|++++........ ..+.+..
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~-----~~~~~~~------ 69 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR-----PGLTVVP------ 69 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-----TTEEECS------
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----Ccceecc------
Confidence 667889888766 23677888899999999999999999875421110 1111111
Q ss_pred cccccccccChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchh--HHHHh
Q 003222 78 AVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWD--FIYAE 155 (838)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~--~i~~~ 155 (838)
... . ....+++++.+||+|++.....+..+++..++| |...+-.+. .....
T Consensus 70 --------~~~---~---------------~~l~~~l~~~~~Dvi~~~~~~~~~~~~~~~~~p-v~~~h~~~~~~~~~d~ 122 (342)
T 2iuy_A 70 --------AGE---P---------------EEIERWLRTADVDVVHDHSGGVIGPAGLPPGTA-FISSHHFTTRPVNPVG 122 (342)
T ss_dssp --------CCS---H---------------HHHHHHHHHCCCSEEEECSSSSSCSTTCCTTCE-EEEEECSSSBCSCCTT
T ss_pred --------CCc---H---------------HHHHHHHHhcCCCEEEECCchhhHHHHhhcCCC-EEEecCCCCCcccceE
Confidence 000 0 022445778899999988644333346667999 654221111 00000
Q ss_pred hhhhcccchHHHHHHHHhhccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCc
Q 003222 156 YVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (838)
Q Consensus 156 ~~~~~~~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~ 235 (838)
.+.. -+.+.+ .+.. +....+++.|+......+.+. .. ++++ ++++.|....
T Consensus 123 ii~~----S~~~~~----~~~~-------------~~~~~vi~ngvd~~~~~~~~~------~~-~~~~-~i~~vG~~~~ 173 (342)
T 2iuy_A 123 CTYS----SRAQRA----HCGG-------------GDDAPVIPIPVDPARYRSAAD------QV-AKED-FLLFMGRVSP 173 (342)
T ss_dssp EEES----CHHHHH----HTTC-------------CTTSCBCCCCBCGGGSCCSTT------CC-CCCS-CEEEESCCCG
T ss_pred EEEc----CHHHHH----HHhc-------------CCceEEEcCCCChhhcCcccc------cC-CCCC-EEEEEecccc
Confidence 0000 011111 1111 011122233332211111111 11 2333 4566777664
Q ss_pred h---hhhHHhhCCCCcEEEEeCCCCCC---------CCCCeEECCCCCCH--HHHHhhcCEEEec--------------C
Q 003222 236 G---WKLKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDAYT--PDFMAASDCMLGK--------------I 287 (838)
Q Consensus 236 ~---~~ll~~l~~~~~~~vv~G~~~~~---------lp~nv~~~~~~~~~--pdlLa~adl~It~--------------g 287 (838)
. ..+++++...++.++++|..... +++||++++++++. +++|+.||++|.. +
T Consensus 174 ~Kg~~~li~a~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~ 253 (342)
T 2iuy_A 174 HKGALEAAAFAHACGRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEP 253 (342)
T ss_dssp GGTHHHHHHHHHHHTCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCC
T ss_pred ccCHHHHHHHHHhcCcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccC
Confidence 3 23333322226778888876431 35899999998754 7999999999942 2
Q ss_pred ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH--cCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF--YQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 288 G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~--~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
-.+++.||+++|+|+|+.+.. .+.+.++. ...|..++. + .+.+.++|.++++
T Consensus 254 ~~~~~~EAma~G~PvI~s~~~------~~~e~~~~~~~~~g~~~~~-d--~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 254 GATVVSEAAVSGTPVVGTGNG------CLAEIVPSVGEVVGYGTDF-A--PDEARRTLAGLPA 307 (342)
T ss_dssp CCHHHHHHHHTTCCEEECCTT------THHHHGGGGEEECCSSSCC-C--HHHHHHHHHTSCC
T ss_pred ccHHHHHHHhcCCCEEEcCCC------ChHHHhcccCCCceEEcCC-C--HHHHHHHHHHHHH
Confidence 235799999999999998742 34555666 556766665 3 5678888877653
No 61
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=98.95 E-value=1.2e-08 Score=113.41 Aligned_cols=292 Identities=15% Similarity=0.076 Sum_probs=154.9
Q ss_pred ceEEEEEeecCC---CcccHHHHHHHHHHHHHCCCeEEEEeCCCCcc-cccccCCCceeeeeeccCCCcccccccccChH
Q 003222 14 KHLVFAYYVTGH---GFGHATRVVEVVRNLISAGHDVHVVTGAPDFV-FTSEIQSPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 14 ~~~~Il~~v~g~---G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~-~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
+.|+|+|+.+.. ..|+-..+..++++|.++||+|++++...... ..... ... + . .. .....
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~------~~~-~-~--~~-----~~~~~ 83 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYV------VSG-G-K--AV-----PIPYN 83 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTE------EEC-C-C--CC----------
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCccc------ccC-C-c--EE-----ecccc
Confidence 347787776542 25777899999999999999999998754211 11100 000 0 0 00 00000
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC---CchHHHHHHHhCCcEEEEecCchh--HHHHhhhhhcccch
Q 003222 90 ASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV---VPVACRAAADAGIRSVCVTNFSWD--FIYAEYVMAAGHHH 164 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~---~~~~~~aA~~lgIP~V~is~~~~~--~i~~~~~~~~~~~~ 164 (838)
.. ...+.. .. .......+++++.+||+|++.. ...+..+++..++|.|...+-.+. .....+.
T Consensus 84 ~~---~~~~~~-~~-~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~------- 151 (406)
T 2gek_A 84 GS---VARLRF-GP-ATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQ------- 151 (406)
T ss_dssp ----------C-CH-HHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCSHHHHHHHH-------
T ss_pred CC---cccccc-cH-HHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcchhhhhHHHHH-------
Confidence 00 000000 01 1223446678888999999764 233556667779999876332111 0000000
Q ss_pred HHHHHHHHhhccccceEEecCCCC------CCCCCCc-eeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCC-Cch
Q 003222 165 RSIVWQIAEDYSHCEFLIRLPGYC------PMPAFRD-VIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQ-PAG 236 (838)
Q Consensus 165 ~~i~~~l~~~y~~~d~ll~~~~~~------~~p~~~~-v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~-~~~ 236 (838)
..+...+..++.++...... ..+. .+ +++.|+......+.+ ...+.+.++ .++++.|+. ...
T Consensus 152 ----~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~~vi~~~v~~~~~~~~~----~~~~~~~~~-~~i~~~G~~~~~~ 221 (406)
T 2gek_A 152 ----GILRPYHEKIIGRIAVSDLARRWQMEALGS-DAVEIPNGVDVASFADAP----LLDGYPREG-RTVLFLGRYDEPR 221 (406)
T ss_dssp ----STTHHHHTTCSEEEESSHHHHHHHHHHHSS-CEEECCCCBCHHHHHTCC----CCTTCSCSS-CEEEEESCTTSGG
T ss_pred ----HHHHHHHhhCCEEEECCHHHHHHHHHhcCC-CcEEecCCCChhhcCCCc----hhhhccCCC-eEEEEEeeeCccc
Confidence 00001112223222211000 0000 11 112221111000000 001122222 466777877 442
Q ss_pred ---hhhHH---hhCC--CCcEEEEeCCCCCC--------CCCCeEECCCCCCH--HHHHhhcCEEEecC----C-hhhHH
Q 003222 237 ---WKLKE---EYLP--SGWKCLVCGASDSQ--------LPPNFIKLPKDAYT--PDFMAASDCMLGKI----G-YGTVS 293 (838)
Q Consensus 237 ---~~ll~---~l~~--~~~~~vv~G~~~~~--------lp~nv~~~~~~~~~--pdlLa~adl~It~g----G-~~Tv~ 293 (838)
..+++ .+.. +++.++++|..... +.+||++.+++++. +++|+.||++|... | .+++.
T Consensus 222 Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~ 301 (406)
T 2gek_A 222 KGMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLV 301 (406)
T ss_dssp GCHHHHHHHHHHHHTTSTTCEEEEESCSCHHHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEEcCCcHHHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHH
Confidence 22333 2322 57888888876431 25789999988654 79999999999653 2 35899
Q ss_pred HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 294 EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 294 Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
||+++|+|+|+.+. ....+.+.....|..++..+ .+.+.++|.++++++
T Consensus 302 Ea~a~G~PvI~~~~------~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~ 350 (406)
T 2gek_A 302 EAMAAGTAVVASDL------DAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDD 350 (406)
T ss_dssp HHHHHTCEEEECCC------HHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCH
T ss_pred HHHHcCCCEEEecC------CcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 99999999999762 35566677677888887655 468999999998765
No 62
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=98.78 E-value=5e-07 Score=99.30 Aligned_cols=148 Identities=13% Similarity=0.028 Sum_probs=92.6
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCc---h-hhhHHh---hC--CCCcEEEEe-CCCC--CC-----CC--CCeEECCCCC
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPA---G-WKLKEE---YL--PSGWKCLVC-GASD--SQ-----LP--PNFIKLPKDA 271 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~---~-~~ll~~---l~--~~~~~~vv~-G~~~--~~-----lp--~nv~~~~~~~ 271 (838)
.++++.+ +++++++++.|.... + ..++++ +. .+++.+++. |... .. +. +||++.++..
T Consensus 196 ~~~~~~~---~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~~g~~~ 272 (375)
T 3beo_A 196 HPVLEKL---GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHMNPVVRETANDILGDYGRIHLIEPLD 272 (375)
T ss_dssp CHHHHTT---TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCC
T ss_pred HHHHHhc---cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEEeCCCCHHHHHHHHHHhhccCCEEEeCCCC
Confidence 3455554 245677888886542 2 123332 21 246665543 3221 00 12 6899866543
Q ss_pred --CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 272 --YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 272 --~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
.++++|+.||+||+.+| +++.||+++|+|+|+.+. .... ..+.+.|.|..++. +++.+.++|.+++++
T Consensus 273 ~~~~~~~~~~ad~~v~~sg-~~~lEA~a~G~Pvi~~~~--~~~~----~e~v~~g~g~~v~~---d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 273 VIDFHNVAARSYLMLTDSG-GVQEEAPSLGVPVLVLRD--TTER----PEGIEAGTLKLAGT---DEETIFSLADELLSD 342 (375)
T ss_dssp HHHHHHHHHTCSEEEECCH-HHHHHHHHHTCCEEECSS--CCSC----HHHHHTTSEEECCS---CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcEEEECCC-ChHHHHHhcCCCEEEecC--CCCC----ceeecCCceEEcCC---CHHHHHHHHHHHHhC
Confidence 46689999999999875 669999999999999852 1222 22456778888763 467899999999976
Q ss_pred CCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 350 KPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 350 ~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
+..+. ......+++++.+.+++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 343 KEAHDKMSKASNPYGDGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHHHHCCCCCTTCCSCHHHHHHHHHHHHT
T ss_pred hHhHhhhhhcCCCCCCCcHHHHHHHHHHHHh
Confidence 52110 23456667777766653
No 63
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.77 E-value=2.6e-07 Score=105.71 Aligned_cols=130 Identities=20% Similarity=0.097 Sum_probs=90.6
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch--h-hhHH---hhCCCCcEEEEeCCCCC---C--------CCCCeE-ECCCCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKE---EYLPSGWKCLVCGASDS---Q--------LPPNFI-KLPKDA 271 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~-~ll~---~l~~~~~~~vv~G~~~~---~--------lp~nv~-~~~~~~ 271 (838)
+..+++.++++.+...++++.|..... . .+++ .+..+++.++++|.... . +++||. +.++..
T Consensus 277 ~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~ 356 (485)
T 1rzu_A 277 KKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNE 356 (485)
T ss_dssp HHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCH
T ss_pred HHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCH
Confidence 467888899876523477888887653 2 2222 23234788888887642 1 467887 678854
Q ss_pred CH-HHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc---------CcEEEEecCCCChh
Q 003222 272 YT-PDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY---------QGGVEMIRRDLLTG 337 (838)
Q Consensus 272 ~~-pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~---------G~g~~l~~~~~~~~ 337 (838)
.. +++|+.||++|.- +..+++.|||++|+|+|+... ..+.+.++.. +.|..++..+ ++
T Consensus 357 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~------gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~ 428 (485)
T 1rzu_A 357 PLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVART------GGLADTVIDANHAALASKAATGVQFSPVT--LD 428 (485)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS------HHHHHHCCBCCHHHHHTTCCCBEEESSCS--HH
T ss_pred HHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCC------CChhheecccccccccccCCcceEeCCCC--HH
Confidence 44 6899999999953 334689999999999999763 2445555554 6888887655 47
Q ss_pred hHHHHHHHHh
Q 003222 338 HWKPYLERAI 347 (838)
Q Consensus 338 ~l~~~l~~ll 347 (838)
.|.++|.+++
T Consensus 429 ~la~~i~~ll 438 (485)
T 1rzu_A 429 GLKQAIRRTV 438 (485)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8899999988
No 64
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.75 E-value=1.2e-07 Score=105.78 Aligned_cols=151 Identities=11% Similarity=0.044 Sum_probs=97.2
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC---ch---hhhHHhh---CCC-CcEEEEe-CCCCC----CC------CCCeEECC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQP---AG---WKLKEEY---LPS-GWKCLVC-GASDS----QL------PPNFIKLP 268 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~---~~---~~ll~~l---~~~-~~~~vv~-G~~~~----~l------p~nv~~~~ 268 (838)
+.++++.+++++ ++++++++|... .. ..+++++ ... ++.+++. ++... .. .+||++++
T Consensus 191 ~~~~~~~lgl~~-~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~ 269 (385)
T 4hwg_A 191 KSDILDKLSLTP-KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLP 269 (385)
T ss_dssp HCCHHHHTTCCT-TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECC
T ss_pred hhHHHHHcCCCc-CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEc
Confidence 345778889864 678888887532 11 1233332 111 4555543 32110 12 25788765
Q ss_pred CCC--CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 269 KDA--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 269 ~~~--~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
... .+..+|++||++||.+|. .+.||+++|+|+|.++. ..|.+. +.+.|.++.+.. +++.+.+++.++
T Consensus 270 ~lg~~~~~~l~~~adlvvt~SGg-v~~EA~alG~Pvv~~~~--~ter~e----~v~~G~~~lv~~---d~~~i~~ai~~l 339 (385)
T 4hwg_A 270 AFSFTDYVKLQMNAFCILSDSGT-ITEEASILNLPALNIRE--AHERPE----GMDAGTLIMSGF---KAERVLQAVKTI 339 (385)
T ss_dssp CCCHHHHHHHHHHCSEEEECCTT-HHHHHHHTTCCEEECSS--SCSCTH----HHHHTCCEECCS---SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCcEEEECCcc-HHHHHHHcCCCEEEcCC--Cccchh----hhhcCceEEcCC---CHHHHHHHHHHH
Confidence 544 356899999999999985 57999999999999973 333111 356788776642 367899999999
Q ss_pred hhCCCCcc----------CCCCHHHHHHHHHHHHh
Q 003222 347 ISLKPCYE----------GGINGGEVAAHILQETA 371 (838)
Q Consensus 347 l~~~~~~~----------~~~~g~~~~a~~i~~~~ 371 (838)
++++..+. ..++.++++++.|.+++
T Consensus 340 l~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 340 TEEHDNNKRTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp HTTCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred HhChHHHHHhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 98765432 35667777777777763
No 65
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.61 E-value=8.7e-07 Score=101.34 Aligned_cols=130 Identities=16% Similarity=0.109 Sum_probs=88.4
Q ss_pred hHHHHHHhCCCC-CCcEEEEEcCCCCch---hhhHHh---hCCCCcEEEEeCCCCC-----------CCCCCeE-ECCCC
Q 003222 210 RKEVRKELGIED-DVKLLILNFGGQPAG---WKLKEE---YLPSGWKCLVCGASDS-----------QLPPNFI-KLPKD 270 (838)
Q Consensus 210 ~~~~r~~l~~~~-~~~~Vlvs~Gs~~~~---~~ll~~---l~~~~~~~vv~G~~~~-----------~lp~nv~-~~~~~ 270 (838)
+..+++.+++++ +...++++.|..... ..++++ +..+++.++++|.... .++.+|. +.++.
T Consensus 277 ~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~ 356 (485)
T 2qzs_A 277 KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYH 356 (485)
T ss_dssp HHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCC
T ss_pred HHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCC
Confidence 467888899864 133456677766542 223332 3224788888876531 1457886 77875
Q ss_pred CCH-HHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc---------CcEEEEecCCCCh
Q 003222 271 AYT-PDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY---------QGGVEMIRRDLLT 336 (838)
Q Consensus 271 ~~~-pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~---------G~g~~l~~~~~~~ 336 (838)
... +++|+.||++|.-+ ..+++.|||++|+|+|+... ..+.+.+... +.|..++..+ +
T Consensus 357 ~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~------gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~ 428 (485)
T 2qzs_A 357 EAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRT------GGLADTVSDCSLENLADGVASGFVFEDSN--A 428 (485)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS------HHHHHHCCBCCHHHHHTTCCCBEEECSSS--H
T ss_pred HHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCC------CCccceeccCccccccccccceEEECCCC--H
Confidence 443 68999999999533 34689999999999999863 2444555544 6888887665 5
Q ss_pred hhHHHHHHHHh
Q 003222 337 GHWKPYLERAI 347 (838)
Q Consensus 337 ~~l~~~l~~ll 347 (838)
+.|.++|.+++
T Consensus 429 ~~la~~i~~ll 439 (485)
T 2qzs_A 429 WSLLRAIRRAF 439 (485)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78999999988
No 66
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.57 E-value=8.3e-06 Score=91.41 Aligned_cols=134 Identities=7% Similarity=-0.097 Sum_probs=93.5
Q ss_pred CcEEEEEcCCCCchhhhHHhhC--CCCcEEEEeCCCCC---CCCCCeEECCCCC--CHHHHHhhcCEEEec----CChhh
Q 003222 223 VKLLILNFGGQPAGWKLKEEYL--PSGWKCLVCGASDS---QLPPNFIKLPKDA--YTPDFMAASDCMLGK----IGYGT 291 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~~~ll~~l~--~~~~~~vv~G~~~~---~lp~nv~~~~~~~--~~pdlLa~adl~It~----gG~~T 291 (838)
.+.++++.|.......++..+. .+++.++++|.... .+.+||+++|+++ .++++|+.||++|.- +-.++
T Consensus 221 ~~~~i~~vGrl~~~Kg~~~~l~~~~~~~~l~ivG~g~~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~ 300 (406)
T 2hy7_A 221 EGIHAVAVGSMLFDPEFFVVASKAFPQVTFHVIGSGMGRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVY 300 (406)
T ss_dssp SSEEEEEECCTTBCHHHHHHHHHHCTTEEEEEESCSSCCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTT
T ss_pred CCcEEEEEeccccccCHHHHHHHhCCCeEEEEEeCchHHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchH
Confidence 3367788888876433444332 36788888886532 2578999999885 577999999999952 23357
Q ss_pred HHHHH-------HcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE-EecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHH
Q 003222 292 VSEAL-------AYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE-MIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVA 363 (838)
Q Consensus 292 v~Eal-------~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~-l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~ 363 (838)
+.||+ ++|+|+|+... +.....|.. +...+ ++.|.++|.++++++.......-.-+..
T Consensus 301 ~lEAm~Kl~eYla~G~PVIas~~------------v~~~~~G~l~v~~~d--~~~la~ai~~ll~~~~~~~~~~~sw~~~ 366 (406)
T 2hy7_A 301 LADSSMKLLQYDFFGLPAVCPNA------------VVGPYKSRFGYTPGN--ADSVIAAITQALEAPRVRYRQCLNWSDT 366 (406)
T ss_dssp HHHHCHHHHHHHHHTCCEEEEGG------------GTCSCSSEEEECTTC--HHHHHHHHHHHHHCCCCCCSCCCBHHHH
T ss_pred HHHHHHHHHHHhhCCCcEEEehh------------cccCcceEEEeCCCC--HHHHHHHHHHHHhCcchhhhhcCCHHHH
Confidence 89999 99999999863 334455877 77665 5789999999998875222334455566
Q ss_pred HHHHHHH
Q 003222 364 AHILQET 370 (838)
Q Consensus 364 a~~i~~~ 370 (838)
++.+.++
T Consensus 367 a~~~~~~ 373 (406)
T 2hy7_A 367 TDRVLDP 373 (406)
T ss_dssp HHHHHCG
T ss_pred HHHHHHh
Confidence 6666555
No 67
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.52 E-value=3.1e-06 Score=94.40 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=83.7
Q ss_pred HHHHHhCCCC-CCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC-----------------CCCC--
Q 003222 212 EVRKELGIED-DVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ-----------------LPPN-- 263 (838)
Q Consensus 212 ~~r~~l~~~~-~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~-----------------lp~n-- 263 (838)
..++.+++++ +...++++.|..... ..++++ +. .+++.++++|..... +..+
T Consensus 171 ~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~ 250 (413)
T 3oy2_A 171 DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFT 250 (413)
T ss_dssp THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccc
Confidence 5667777753 145677888887543 223332 21 256777777654321 3333
Q ss_pred -----eEECCCCC--CHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCc-------
Q 003222 264 -----FIKLPKDA--YTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQG------- 325 (838)
Q Consensus 264 -----v~~~~~~~--~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~------- 325 (838)
+.+.++++ .++++|+.||++|.- +...++.||+++|+|+|+.+.. .+.+.+.....
T Consensus 251 ~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~------g~~e~v~~~~~~~i~~~~ 324 (413)
T 3oy2_A 251 HLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVG------GADDYFSGDCVYKIKPSA 324 (413)
T ss_dssp HHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCH------HHHHHSCTTTSEEECCCE
T ss_pred cccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCC------ChHHHHccCccccccccc
Confidence 66678765 577999999999952 3345899999999999997632 34444443322
Q ss_pred --------EE--EEecCCCChhhHHHHHHHHhhCC
Q 003222 326 --------GV--EMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 326 --------g~--~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|+ .+...+ ++.+.++| ++++++
T Consensus 325 ~~~~~~~~G~~gl~~~~d--~~~la~~i-~l~~~~ 356 (413)
T 3oy2_A 325 WISVDDRDGIGGIEGIID--VDDLVEAF-TFFKDE 356 (413)
T ss_dssp EEECTTTCSSCCEEEECC--HHHHHHHH-HHTTSH
T ss_pred ccccccccCcceeeCCCC--HHHHHHHH-HHhcCH
Confidence 54 565554 57899999 998765
No 68
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.43 E-value=4.8e-06 Score=100.82 Aligned_cols=124 Identities=13% Similarity=0.072 Sum_probs=80.5
Q ss_pred HHhCC--CCCCcEEEEEcCCCCch---hhhHHhh--C---CCCcEEEEeCCCCC----------------------CCCC
Q 003222 215 KELGI--EDDVKLLILNFGGQPAG---WKLKEEY--L---PSGWKCLVCGASDS----------------------QLPP 262 (838)
Q Consensus 215 ~~l~~--~~~~~~Vlvs~Gs~~~~---~~ll~~l--~---~~~~~~vv~G~~~~----------------------~lp~ 262 (838)
+.+++ ++++ .++++.|..... ..+++++ + .+++.++++|.... .+.+
T Consensus 562 ~~lg~l~~~~~-~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~ 640 (816)
T 3s28_A 562 EHLCVLKDKKK-PILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNG 640 (816)
T ss_dssp TEESCBSCTTS-CEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBB
T ss_pred HHhcccCCCCC-eEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCC
Confidence 44554 3344 466778877653 2233332 1 13578888887651 1457
Q ss_pred CeEECCCCCC------HHHHHh-hcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEec
Q 003222 263 NFIKLPKDAY------TPDFMA-ASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR 331 (838)
Q Consensus 263 nv~~~~~~~~------~pdlLa-~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~ 331 (838)
+|.+++++.. ++.+|+ ++|+||.- +-..++.|||++|+|+|+.... ...+.+.....|+.++.
T Consensus 641 ~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~G------G~~EiV~dg~~Gllv~p 714 (816)
T 3s28_A 641 QFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG------GPAEIIVHGKSGFHIDP 714 (816)
T ss_dssp BEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSB------THHHHCCBTTTBEEECT
T ss_pred cEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCC------ChHHHHccCCcEEEeCC
Confidence 8999887753 335666 58999953 2336899999999999998632 23445556667988887
Q ss_pred CCCChhhHHHHHHHHh
Q 003222 332 RDLLTGHWKPYLERAI 347 (838)
Q Consensus 332 ~~~~~~~l~~~l~~ll 347 (838)
.+ ++.+.++|.+++
T Consensus 715 ~D--~e~LA~aI~~lL 728 (816)
T 3s28_A 715 YH--GDQAADTLADFF 728 (816)
T ss_dssp TS--HHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHH
Confidence 66 467888886665
No 69
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.42 E-value=7.8e-07 Score=103.94 Aligned_cols=133 Identities=11% Similarity=0.020 Sum_probs=87.0
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCch--hhhHHh---hC--CCCcEEEEeC-CCCC-----------CCC-CCeEECCCCC
Q 003222 212 EVRKELGIEDDVKLLILNFGGQPAG--WKLKEE---YL--PSGWKCLVCG-ASDS-----------QLP-PNFIKLPKDA 271 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll~~---l~--~~~~~~vv~G-~~~~-----------~lp-~nv~~~~~~~ 271 (838)
..++.++++++ ++|+ ..|+.... ..+++. +. .+++.++++| .... .+. ++|+++|+++
T Consensus 366 ~~r~~~~~~~~-~~v~-~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~ 443 (568)
T 2vsy_A 366 PSRTQCGLPEQ-GVVL-CCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLP 443 (568)
T ss_dssp CCTGGGTCCTT-SCEE-EECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred CCccccCCCCC-CEEE-EeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCC
Confidence 35677887644 3444 44555432 123332 21 3577888888 4321 134 7899999985
Q ss_pred --CHHHHHhhcCEEEec---CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 272 --YTPDFMAASDCMLGK---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 272 --~~pdlLa~adl~It~---gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
.++++|+.+|+||.. ++.+++.||+++|+|+|++|...+.-. ..+..+...|....+.. +++.+.+++.++
T Consensus 444 ~~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~-~~~~~l~~~g~~e~v~~---~~~~la~~i~~l 519 (568)
T 2vsy_A 444 HPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAAR-VAGSLNHHLGLDEMNVA---DDAAFVAKAVAL 519 (568)
T ss_dssp HHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGS-HHHHHHHHHTCGGGBCS---SHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHH-HHHHHHHHCCChhhhcC---CHHHHHHHHHHH
Confidence 677999999999942 455789999999999999874322111 23456677777655543 467888899998
Q ss_pred hhCC
Q 003222 347 ISLK 350 (838)
Q Consensus 347 l~~~ 350 (838)
++++
T Consensus 520 ~~~~ 523 (568)
T 2vsy_A 520 ASDP 523 (568)
T ss_dssp HHCH
T ss_pred hcCH
Confidence 8765
No 70
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=98.42 E-value=1.9e-06 Score=93.01 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHHHhhhcCCCCCh
Q 003222 617 ILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM----SAIAAAHGLNI-HPRDLALLCQKVENHIVGAPCGV 691 (838)
Q Consensus 617 i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~----~al~~l~~~~l-~~~ela~~a~~~E~~~~G~~~G~ 691 (838)
+..++++.+.. .|++|.+.++||.++|||||||..+|++ .|++.++|+++ +++|++++|..+| |
T Consensus 80 i~~~l~~~~~~--~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs--------G- 148 (323)
T 3lto_A 80 LVRLKEYFGYV--GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS--------G- 148 (323)
T ss_dssp HHHHHHHHTCC--CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC--------G-
T ss_pred HHHHHHHhCCC--CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC--------C-
Confidence 45566677643 6999999999999999999999999999 99999999999 9999999997543 2
Q ss_pred hhHHHhhcCCC
Q 003222 692 MDQMASACGEA 702 (838)
Q Consensus 692 mDq~a~~~G~~ 702 (838)
+-..|++||.
T Consensus 149 -saa~si~GG~ 158 (323)
T 3lto_A 149 -SSCRSFYAPW 158 (323)
T ss_dssp -GGGGGGSCSE
T ss_pred -CcchhhhCCE
Confidence 3346999994
No 71
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.37 E-value=3.4e-06 Score=93.74 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHhCCC-CCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCC
Q 003222 610 AAYVAGTILVLMTELGVR-FEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~-~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~ 688 (838)
.+.+..++..+.+..+.. ...|++|.+.++||.++|||||||..+|++.|++.++|++ .+++++|...|
T Consensus 75 ~~~v~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~------- 144 (380)
T 2hke_A 75 TPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS------- 144 (380)
T ss_dssp CHHHHHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC-------
Confidence 356666656554333430 0268999999999999999999999999999999999987 78889987654
Q ss_pred CChhhHHHhhcCCC
Q 003222 689 CGVMDQMASACGEA 702 (838)
Q Consensus 689 ~G~mDq~a~~~G~~ 702 (838)
| |...|++||.
T Consensus 145 -G--sva~s~~GG~ 155 (380)
T 2hke_A 145 -G--SACRSAFGGF 155 (380)
T ss_dssp -G--GGGGGGSSSE
T ss_pred -c--ceeeehhCCe
Confidence 2 4567899994
No 72
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=98.33 E-value=3.9e-06 Score=94.36 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCC----CCCCeEECCCCC--CHHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHH
Q 003222 247 GWKCLVCGASDSQ----LPPNFIKLPKDA--YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFL 316 (838)
Q Consensus 247 ~~~~vv~G~~~~~----lp~nv~~~~~~~--~~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~N 316 (838)
++.++++|..... +..+|+++++++ .++++|+.||+||.-+ |+ .++.|||++|+|+|+ ...+..|
T Consensus 276 ~~~l~ivG~~~~~~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g~~e---- 350 (413)
T 2x0d_A 276 EWKIISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVIT-NKYENKD---- 350 (413)
T ss_dssp GCEEEEEESCCCCEEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEE-ECBTTBC----
T ss_pred ceEEEEEcCCchhhhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEE-eCCCcch----
Confidence 3788888875432 456888888863 5779999999999532 33 478999999999999 4333333
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 317 a~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.++....|+.++..+ ++.+.++|.++++++
T Consensus 351 --~v~~~~~G~lv~~~d--~~~la~ai~~ll~~~ 380 (413)
T 2x0d_A 351 --LSNWHSNIVSLEQLN--PENIAETLVELCMSF 380 (413)
T ss_dssp --GGGTBTTEEEESSCS--HHHHHHHHHHHHHHT
T ss_pred --hhhcCCCEEEeCCCC--HHHHHHHHHHHHcCH
Confidence 244455788887766 578999999999876
No 73
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.17 E-value=0.00012 Score=81.06 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=61.4
Q ss_pred CCeEECCCCCCHHHHHhhcCEEEe-----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh
Q 003222 262 PNFIKLPKDAYTPDFMAASDCMLG-----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336 (838)
Q Consensus 262 ~nv~~~~~~~~~pdlLa~adl~It-----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~ 336 (838)
.+|.+.++..+++++|+.||+++. .+|..++.||+++|+|+|+-|.. .......+.+.+.|.++.. .+ +
T Consensus 260 ~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~--~~~~e~~~~~~~~G~l~~~--~d--~ 333 (374)
T 2xci_A 260 GDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYT--HKVNDLKEFLEKEGAGFEV--KN--E 333 (374)
T ss_dssp SSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCC--TTSHHHHHHHHHTTCEEEC--CS--H
T ss_pred CcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCc--cChHHHHHHHHHCCCEEEe--CC--H
Confidence 357777877899999999999664 23457899999999999986532 2223445555667877554 33 4
Q ss_pred hhHHHHHHHHhhCCCCc
Q 003222 337 GHWKPYLERAISLKPCY 353 (838)
Q Consensus 337 ~~l~~~l~~ll~~~~~~ 353 (838)
+.+.++|.+++++ ...
T Consensus 334 ~~La~ai~~ll~d-~~r 349 (374)
T 2xci_A 334 TELVTKLTELLSV-KKE 349 (374)
T ss_dssp HHHHHHHHHHHHS-CCC
T ss_pred HHHHHHHHHHHhH-HHH
Confidence 6889999999987 443
No 74
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=97.98 E-value=3e-05 Score=76.02 Aligned_cols=123 Identities=14% Similarity=-0.019 Sum_probs=85.6
Q ss_pred CCCCCcEEEEEcCCCCch---hhhHHhhCC-CCcEEEEeCCCCC-----------C--CCCCeEECCCCCC--HHHHHhh
Q 003222 219 IEDDVKLLILNFGGQPAG---WKLKEEYLP-SGWKCLVCGASDS-----------Q--LPPNFIKLPKDAY--TPDFMAA 279 (838)
Q Consensus 219 ~~~~~~~Vlvs~Gs~~~~---~~ll~~l~~-~~~~~vv~G~~~~-----------~--lp~nv~~~~~~~~--~pdlLa~ 279 (838)
++.+++ ++++.|+.... ..+++.+.. +++.++++|.... . +++||+++++++. ++++|+.
T Consensus 19 ~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ 97 (177)
T 2f9f_A 19 FKCYGD-FWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR 97 (177)
T ss_dssp CCCCCS-CEEEECCSSGGGTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH
T ss_pred cCCCCC-EEEEEeccccccCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 444444 45677777653 223332211 5677777776543 1 4569999998876 7899999
Q ss_pred cCEEEe---c-CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 280 SDCMLG---K-IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 280 adl~It---~-gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
||++|. . +...++.||+++|+|+|+.+. ..+.+.++..+.|+.+ ..+ .+.+.++|.++++++.
T Consensus 98 adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~------~~~~e~i~~~~~g~~~-~~d--~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 98 CKGLLCTAKDEDFGLTPIEAMASGKPVIAVNE------GGFKETVINEKTGYLV-NAD--VNEIIDAMKKVSKNPD 164 (177)
T ss_dssp CSEEEECCSSCCSCHHHHHHHHTTCCEEEESS------HHHHHHCCBTTTEEEE-CSC--HHHHHHHHHHHHHCTT
T ss_pred CCEEEeCCCcCCCChHHHHHHHcCCcEEEeCC------CCHHHHhcCCCccEEe-CCC--HHHHHHHHHHHHhCHH
Confidence 999997 2 333589999999999999762 3455666666788888 444 5789999999998773
No 75
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.84 E-value=0.00011 Score=72.93 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=92.0
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-ch---hhhHH---hhC--C--CCcEEEEeCCCC--C--C-------CCCCeEE-
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQP-AG---WKLKE---EYL--P--SGWKCLVCGASD--S--Q-------LPPNFIK- 266 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~-~~---~~ll~---~l~--~--~~~~~vv~G~~~--~--~-------lp~nv~~- 266 (838)
+..+++.++++ +.+ ++++.|+.. .. ..+++ .+. . +++.++++|... . . ++ ||++
T Consensus 24 ~~~~r~~~~~~-~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~ 100 (200)
T 2bfw_A 24 KKSLLSKFGMD-EGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVI 100 (200)
T ss_dssp HHHHHHHTTCC-SCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEE
T ss_pred HHHHHHHcCCC-CCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEE
Confidence 55788889986 444 667778777 42 22232 332 2 467888888765 1 1 34 9999
Q ss_pred CCCCC--CHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 003222 267 LPKDA--YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (838)
Q Consensus 267 ~~~~~--~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~ 340 (838)
.++++ .++++|+.||++|... | ..++.||+++|+|+|+... ..+.+.+ ..+.|..++..+ .+.+.
T Consensus 101 ~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~------~~~~e~~-~~~~g~~~~~~~--~~~l~ 171 (200)
T 2bfw_A 101 TEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV------GGLRDII-TNETGILVKAGD--PGELA 171 (200)
T ss_dssp CSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESC------HHHHHHC-CTTTCEEECTTC--HHHHH
T ss_pred eccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCC------CChHHHc-CCCceEEecCCC--HHHHH
Confidence 99987 6789999999999643 2 3689999999999999752 2455556 667788887655 46889
Q ss_pred HHHHHHhh-CC
Q 003222 341 PYLERAIS-LK 350 (838)
Q Consensus 341 ~~l~~ll~-~~ 350 (838)
++|.++++ ++
T Consensus 172 ~~i~~l~~~~~ 182 (200)
T 2bfw_A 172 NAILKALELSR 182 (200)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHhcCH
Confidence 99999987 65
No 76
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=97.69 E-value=6.6e-05 Score=82.86 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=51.2
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
.|++|.+.++||.++|||||||..+|++.|++.++|+ +.+++++|..++ | +-..|++||.
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s----G------s~~~s~~GG~ 181 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS----G------SACRSLYGGF 181 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC----G------GGGGGGSSSE
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC----C------CcchHhhCCE
Confidence 4899999999999999999999999999999999998 367888887653 2 2356899994
No 77
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=96.99 E-value=0.0013 Score=63.01 Aligned_cols=117 Identities=9% Similarity=-0.060 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCch---hhhHHhh--CC--CCcEEEEeCCCCCC---------CCCCeEECCCCC--CHHHHHhhcCEEEe
Q 003222 224 KLLILNFGGQPAG---WKLKEEY--LP--SGWKCLVCGASDSQ---------LPPNFIKLPKDA--YTPDFMAASDCMLG 285 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~---~~ll~~l--~~--~~~~~vv~G~~~~~---------lp~nv~~~~~~~--~~pdlLa~adl~It 285 (838)
++++++.|..... ..+++++ +. +++.++++|..... ++.++++ ++.+ .++++|+.||++|.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v~ 80 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYVH 80 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEEE
Confidence 5678888887653 2233332 22 46678888865421 2347777 8764 45689999999996
Q ss_pred c----CChhhHHHHHHcCC-cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 286 K----IGYGTVSEALAYKL-PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 286 ~----gG~~Tv~Eal~~Gv-P~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
- +...++.||+++|+ |+|+........+ .+...+. .+...+ ++.+.++|.++++++
T Consensus 81 ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~-----~~~~~~~--~~~~~~--~~~l~~~i~~l~~~~ 141 (166)
T 3qhp_A 81 AANVESEAIACLEAISVGIVPVIANSPLSATRQ-----FALDERS--LFEPNN--AKDLSAKIDWWLENK 141 (166)
T ss_dssp CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGG-----GCSSGGG--EECTTC--HHHHHHHHHHHHHCH
T ss_pred CCcccCccHHHHHHHhcCCCcEEeeCCCCchhh-----hccCCce--EEcCCC--HHHHHHHHHHHHhCH
Confidence 3 33368999999997 9999442222111 1222233 454444 578899999998765
No 78
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=96.98 E-value=0.039 Score=60.07 Aligned_cols=250 Identities=13% Similarity=0.139 Sum_probs=123.6
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCcccccccC-CCcee-eeeeccCCCcccccccccCh
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDFVFTSEIQ-SPRLF-IRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~~~~~~~i~-~~~~~-~~~~~~~~g~~~~~~~~~~~ 88 (838)
+...+||++ ...+.|-+.-+..+.++|+++ +.+|++++... +...++ .+.+. +.. .+.
T Consensus 6 l~~~~iLvi-~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~---~~~l~~~~p~vd~vi~--------------~~~ 67 (349)
T 3tov_A 6 LDYKRIVVT-FLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEK---LQQVMEYNPNIDELIV--------------VDK 67 (349)
T ss_dssp CTTCEEEEE-CCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGG---GGGGTSSCTTCSEEEE--------------ECC
T ss_pred CCCCEEEEE-ecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcc---hhHHHhcCCCccEEEE--------------eCc
Confidence 334566554 467899999999999999997 78999987743 111111 11111 111 010
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhcCCC-cEEEECC-CchHHHHHHHhCCcE-EEEecCchhHHHHhhhhh---ccc
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLNSIKA-DLVVSDV-VPVACRAAADAGIRS-VCVTNFSWDFIYAEYVMA---AGH 162 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kP-DlVVsD~-~~~~~~aA~~lgIP~-V~is~~~~~~i~~~~~~~---~~~ 162 (838)
......+.. +.+....|++.++ |+||.-+ ..-..+++...++|. +.+....+...|....+. ..+
T Consensus 68 ~~~~~~~~~---------~~~l~~~Lr~~~y~D~vidl~~~~rs~~l~~~~~a~~riG~~~~~~~~~~~~~~~~~~~~~h 138 (349)
T 3tov_A 68 KGRHNSISG---------LNEVAREINAKGKTDIVINLHPNERTSYLAWKIHAPITTGMSHFLFRPFMTKYTRLDRKTRH 138 (349)
T ss_dssp SSHHHHHHH---------HHHHHHHHHHHCCCCEEEECCCSHHHHHHHHHHCCSEEEECCCTTTGGGCSEECCCCTTTSC
T ss_pred ccccccHHH---------HHHHHHHHhhCCCCeEEEECCCChHHHHHHHHhCCCeEEecCCCCccccccccccCCCCCcc
Confidence 000011111 1123445778899 9999654 444566777889996 444332221111111110 011
Q ss_pred chHHHHHHHHhhccccceEEecCCCCCCCCC-CceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--h--
Q 003222 163 HHRSIVWQIAEDYSHCEFLIRLPGYCPMPAF-RDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--W-- 237 (838)
Q Consensus 163 ~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~-~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~-- 237 (838)
..+...+ +.+... .+. .+.. ..+ .++... ....+++.+.+++++++++|.+..|+.... +
T Consensus 139 ~v~r~~~-ll~~lg-------~~~---~~~~~~~l-~~~~~~---~~~~~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~ 203 (349)
T 3tov_A 139 AADMYIN-VLEQLG-------VTD---TSNSGLHI-EICEEW---RCQAQEFYSSHGLTDTDILIGFNIGSAVPEKRWPA 203 (349)
T ss_dssp HHHHHHH-HHHHTT-------CCC---CCCCCCCC-CCCHHH---HHHHHHHHHHTTCCTTCCEEEEECCCSSGGGCCCH
T ss_pred HHHHHHH-HHHHhC-------CCc---cCCCceee-eCCHHH---HHHHHHHHHHcCCCCCCCEEEEeCCCCCccCCCCH
Confidence 1111111 111111 000 0000 000 011000 000112334456666788999998875431 2
Q ss_pred ----hhHHhhCCCCcEEEEeCCCCCC---------CCCCeEE-CCCCC--CHHHHHhhcCEEEec-CChhhHHHHHHcCC
Q 003222 238 ----KLKEEYLPSGWKCLVCGASDSQ---------LPPNFIK-LPKDA--YTPDFMAASDCMLGK-IGYGTVSEALAYKL 300 (838)
Q Consensus 238 ----~ll~~l~~~~~~~vv~G~~~~~---------lp~nv~~-~~~~~--~~pdlLa~adl~It~-gG~~Tv~Eal~~Gv 300 (838)
++.+.+...++.++++|...+. ++.++.. .+... .+..+|+.||++||. +| ++.=|.++|+
T Consensus 204 ~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~~i~~DsG--~~HlAaa~g~ 281 (349)
T 3tov_A 204 ERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNLLITNDSG--PMHVGISQGV 281 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSEEEEESSH--HHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCEEEECCCC--HHHHHHhcCC
Confidence 2223343346777777654321 3444433 33322 234788899999997 44 3333899999
Q ss_pred cEEEEe
Q 003222 301 PFVFVR 306 (838)
Q Consensus 301 P~l~iP 306 (838)
|+|++=
T Consensus 282 P~v~lf 287 (349)
T 3tov_A 282 PIVALY 287 (349)
T ss_dssp CEEEEC
T ss_pred CEEEEE
Confidence 999984
No 79
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.83 E-value=0.032 Score=60.21 Aligned_cols=254 Identities=10% Similarity=0.036 Sum_probs=123.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCcccccccC-CCce-eeeeeccCCCcccccccccChHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDFVFTSEIQ-SPRL-FIRKVLLDCGAVQADALTVDRLASL 92 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~~~~~~~i~-~~~~-~~~~~~~~~g~~~~~~~~~~~~~~l 92 (838)
+||+ +.+.+.|-+.-+..+.++|+++ +.+|++++... +...+. .+.+ .+.. . +.....
T Consensus 2 kILi-i~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~---~~~l~~~~p~i~~v~~--~------------~~~~~~ 63 (348)
T 1psw_A 2 KILV-IGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAW---CRPLLSRMPEVNEAIP--M------------PLGHGA 63 (348)
T ss_dssp EEEE-ECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGG---GHHHHTTCTTEEEEEE--C------------------
T ss_pred eEEE-EeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcc---hhHHHhcCCccCEEEE--e------------cCCccc
Confidence 5655 4566789888899999999987 88999998742 111111 1211 1111 0 000000
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcE-EEEecC-chhHHHHhhhhhcccchHHHHH
Q 003222 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRS-VCVTNF-SWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~-V~is~~-~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
. .+. ...+..+.|++.+||+||.-. ..-...++...++|. +.+... .|.. +...............+
T Consensus 64 ----~----~~~-~~~~l~~~l~~~~~D~vid~~~~~~sa~~~~~~~~~~~ig~~~~~~~~~-~~~~~~~~~~~~~~~~~ 133 (348)
T 1psw_A 64 ----L----EIG-ERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGEMRYGL-LNDVRVLDKEAWPLMVE 133 (348)
T ss_dssp ---------CHH-HHHHHHHHTTTTTCSEEEECSCCSGGGHHHHHTTCSEEEEECTTTCTTT-CTEEECCCTTTCCSHHH
T ss_pred ----c----chH-HHHHHHHHHHhcCCCEEEECCCChHHHHHHHHhCCCEEeccCCCccccc-ccccccCCCCCCchHHH
Confidence 0 011 122345567889999999433 344556777889997 444321 1110 11100000000000122
Q ss_pred HHHhhccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCC-CCc-h-h------hhH
Q 003222 170 QIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGG-QPA-G-W------KLK 240 (838)
Q Consensus 170 ~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs-~~~-~-~------~ll 240 (838)
+....... ++..... ..++.....|.+. .+....+++++.++++.++++|.+..|+ ... . + ++.
T Consensus 134 ~~~~l~~~----~g~~~~~--~~~~~~~~~p~l~-~~~~~~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~ 206 (348)
T 1psw_A 134 RYIALAYD----KGIMRTA--QDLPQPLLWPQLQ-VSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELA 206 (348)
T ss_dssp HHHHTTSC----GGGCSSG--GGSCSSCCCCCCC-CCHHHHHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHH
T ss_pred HHHHHHhh----ccccccc--ccCCcccCCceee-cCHHHHHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHH
Confidence 21111110 0000000 0000000111111 0111234566777876577889999888 322 1 2 222
Q ss_pred HhhCCCCcEEEEeCCCCCC---------CC----CCeE-ECCCCC--CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEE
Q 003222 241 EEYLPSGWKCLVCGASDSQ---------LP----PNFI-KLPKDA--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (838)
Q Consensus 241 ~~l~~~~~~~vv~G~~~~~---------lp----~nv~-~~~~~~--~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~ 304 (838)
+.+...++.++++|...+. ++ .++. +.+..+ .+..+|+.||++||.-. |++..|.++|+|+|+
T Consensus 207 ~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds-g~~HlAaa~g~P~v~ 285 (348)
T 1psw_A 207 KQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS-GLMHVAAALNRPLVA 285 (348)
T ss_dssp HHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS-HHHHHHHHTTCCEEE
T ss_pred HHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC-HHHHHHHHcCCCEEE
Confidence 2343346777777754321 22 2454 334322 23478889999999743 456669999999999
Q ss_pred Ee
Q 003222 305 VR 306 (838)
Q Consensus 305 iP 306 (838)
+=
T Consensus 286 lf 287 (348)
T 1psw_A 286 LY 287 (348)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 80
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=95.84 E-value=0.023 Score=61.66 Aligned_cols=111 Identities=13% Similarity=-0.032 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCCchhhhHHhhCCCCcEEEEeCCCCCC-CCCCeEECCCCC--CHHHHHhhcCEEEe-cCC----------
Q 003222 223 VKLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDA--YTPDFMAASDCMLG-KIG---------- 288 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~~~ll~~l~~~~~~~vv~G~~~~~-lp~nv~~~~~~~--~~pdlLa~adl~It-~gG---------- 288 (838)
.+.+++..|+.+. .+++..+ .+++.++++|..... ++ ||+++|+.+ .+|.+|+.+|+.+. ..|
T Consensus 177 ~~~~i~yaG~l~k-~~~L~~l-~~~~~f~ivG~G~~~~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~ 253 (339)
T 3rhz_A 177 LKREIHFPGNPER-FSFVKEW-KYDIPLKVYTWQNVELPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYC 253 (339)
T ss_dssp EEEEEEECSCTTT-CGGGGGC-CCSSCEEEEESCCCCCCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCC
T ss_pred CCcEEEEeCCcch-hhHHHhC-CCCCeEEEEeCCcccCcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcC
Confidence 3467788898885 3444444 467888888876543 66 999998875 46678865444443 233
Q ss_pred hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 289 YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 289 ~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
.+-+.|+|++|+|+|+.+.. .+++.+++.++|+.++. .+.+..+|.++
T Consensus 254 P~Kl~eymA~G~PVI~~~~~------~~~~~v~~~~~G~~~~~----~~e~~~~i~~l 301 (339)
T 3rhz_A 254 SYKLGSFLAAGIPVIVQEGI------ANQELIENNGLGWIVKD----VEEAIMKVKNV 301 (339)
T ss_dssp CHHHHHHHHHTCCEEEETTC------TTTHHHHHHTCEEEESS----HHHHHHHHHHC
T ss_pred hHHHHHHHHcCCCEEEccCh------hHHHHHHhCCeEEEeCC----HHHHHHHHHHh
Confidence 23588999999999987632 45677899999998862 34555566554
No 81
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=95.69 E-value=0.029 Score=64.85 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=81.5
Q ss_pred HHHHHHhCCC--CCCcEEEEEcCCCCch--h-hhHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEECCCCC
Q 003222 211 KEVRKELGIE--DDVKLLILNFGGQPAG--W-KLKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKLPKDA 271 (838)
Q Consensus 211 ~~~r~~l~~~--~~~~~Vlvs~Gs~~~~--~-~ll~---~l~~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~ 271 (838)
..+++.+|++ ++.| ++++.|..... . .+++ .+...++.+++.|..... ++.++.+.....
T Consensus 313 ~~l~~~~gl~~d~~~p-~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~ 391 (536)
T 3vue_A 313 EALQAEAGLPVDRKIP-LIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFN 391 (536)
T ss_dssp HHHHHHTTSCCCTTSC-EEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCC
T ss_pred HHHHHhcCCCCCCCCc-EEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEecc
Confidence 4566777775 3444 55677777653 2 2333 345567778877765421 577887665443
Q ss_pred --CHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC--------CChh
Q 003222 272 --YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD--------LLTG 337 (838)
Q Consensus 272 --~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~--------~~~~ 337 (838)
.++.+++.||+||.-+ | ..+++|||++|+|+|+.... ...+.++....|......+ .+++
T Consensus 392 ~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~g------G~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~ 465 (536)
T 3vue_A 392 APLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTG------GLVDTVIEGKTGFHMGRLSVDCKVVEPSDVK 465 (536)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCT------HHHHHCCBTTTEEECCCCCSCTTCCCHHHHH
T ss_pred HHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCC------CchheeeCCCCccccccCCCceeEECCCCHH
Confidence 2347889999999632 2 25899999999999997532 3445555544565433221 1245
Q ss_pred hHHHHHHHHhh
Q 003222 338 HWKPYLERAIS 348 (838)
Q Consensus 338 ~l~~~l~~ll~ 348 (838)
.+..+|++++.
T Consensus 466 ~la~ai~ral~ 476 (536)
T 3vue_A 466 KVAATLKRAIK 476 (536)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67778877775
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=88.43 E-value=0.94 Score=54.13 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=72.1
Q ss_pred HHHhCCCCCCcEEEEEcCCCCc-hhhhHH---hhC--CCCcEEEEeCCCCC------------CC-CCCeEECCCCCCHH
Q 003222 214 RKELGIEDDVKLLILNFGGQPA-GWKLKE---EYL--PSGWKCLVCGASDS------------QL-PPNFIKLPKDAYTP 274 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~-~~~ll~---~l~--~~~~~~vv~G~~~~------------~l-p~nv~~~~~~~~~p 274 (838)
|+.+|++ +..+||.+|...-+ ..+++. .++ -++-++++...... .+ ++.+.+.+..+ ..
T Consensus 514 R~~~gLp-~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~-~~ 591 (723)
T 4gyw_A 514 RSQYGLP-EDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAP-KE 591 (723)
T ss_dssp GGGGTCC-TTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCC-HH
T ss_pred hhhcCCC-CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCC-HH
Confidence 5677886 55688888854433 122222 121 13333333222111 02 34577666543 34
Q ss_pred HHH---hhcCEEEe---cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 275 DFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 275 dlL---a~adl~It---~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
+.| ..+|+++- .+|.+|++||+++|||+|.++-..+.-. .-+..|...|+...+ ..+..++++..+
T Consensus 592 ~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR-~~~s~l~~~gl~e~i------a~~~~~Y~~~a~ 663 (723)
T 4gyw_A 592 EHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASR-VAASQLTCLGCLELI------AKNRQEYEDIAV 663 (723)
T ss_dssp HHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGT-HHHHHHHHHTCGGGB------CSSHHHHHHHHH
T ss_pred HHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHh-HHHHHHHHcCCcccc------cCCHHHHHHHHH
Confidence 555 45999995 5677999999999999999984433322 345677788876433 234445555544
No 83
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=87.31 E-value=0.48 Score=55.02 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCCeEECCCCCCHH---HHHhhcCEEEe---cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEE
Q 003222 261 PPNFIKLPKDAYTP---DFMAASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGV 327 (838)
Q Consensus 261 p~nv~~~~~~~~~p---dlLa~adl~It---~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~ 327 (838)
.+.+.+.++.+. . ..+..+|+|+- .+|.+|++||+++|+|+|..+-..+... .-+..+...|...
T Consensus 498 ~~Rv~F~g~~p~-~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asR-vgaSlL~~~GLpE 568 (631)
T 3q3e_A 498 GDSATAHPHSPY-HQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEH-IDEGLFKRLGLPE 568 (631)
T ss_dssp GGGEEEECCCCH-HHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHH-HHHHHHHHTTCCG
T ss_pred CccEEEcCCCCH-HHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHH-hHHHHHHhcCCCc
Confidence 457777776652 3 45578999995 3677999999999999999984333222 2345667788764
No 84
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=84.61 E-value=4.2 Score=41.70 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=23.2
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|+++.+ +.--|. |..=..+|+++|.+.| +|+++.+.
T Consensus 1 Mp~ILl---TNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~ 36 (251)
T 2wqk_A 1 MPTFLL---VNDDGY-FSPGINALREALKSLG-RVVVVAPD 36 (251)
T ss_dssp -CEEEE---ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CCEEEE---EcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeC
Confidence 555554 555653 3334568899999988 58887654
No 85
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=83.87 E-value=1.3 Score=50.18 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=54.2
Q ss_pred eEE-CCCCC--CHHHHHhhcCEEEecC---Chh-hHHHHHHcCC-----cEEEEeCCCCCChHHHHHHHHHcCcEEEEec
Q 003222 264 FIK-LPKDA--YTPDFMAASDCMLGKI---GYG-TVSEALAYKL-----PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR 331 (838)
Q Consensus 264 v~~-~~~~~--~~pdlLa~adl~It~g---G~~-Tv~Eal~~Gv-----P~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~ 331 (838)
|++ .++++ .++.+++.||+||..+ |+| ++.|||+||+ |+|+-...+..++ + ..|+.+++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~------l---~~g~lv~p 403 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANE------L---TSALIVNP 403 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGT------C---TTSEEECT
T ss_pred EEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHH------h---CCeEEECC
Confidence 553 45443 4668999999999643 555 7899999998 7777654444444 2 24778887
Q ss_pred CCCChhhHHHHHHHHhhCC
Q 003222 332 RDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 332 ~~~~~~~l~~~l~~ll~~~ 350 (838)
.+ .+.+.++|.++|+++
T Consensus 404 ~d--~~~lA~ai~~lL~~~ 420 (482)
T 1uqt_A 404 YD--RDEVAAALDRALTMS 420 (482)
T ss_dssp TC--HHHHHHHHHHHHTCC
T ss_pred CC--HHHHHHHHHHHHcCC
Confidence 76 468999999999754
No 86
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=82.07 E-value=1.2 Score=52.07 Aligned_cols=38 Identities=11% Similarity=-0.092 Sum_probs=30.7
Q ss_pred CHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCC
Q 003222 272 YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 272 ~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~ 309 (838)
.++++|+.||+||.-+ -..+++||+++|+|+|+....+
T Consensus 511 d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG 552 (725)
T 3nb0_A 511 DYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSG 552 (725)
T ss_dssp CHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBH
T ss_pred HHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCC
Confidence 3568999999999643 3358999999999999987543
No 87
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=79.34 E-value=3.7 Score=43.42 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=66.0
Q ss_pred CCcEEEEEcCCCCch--h------hhHHhhCCCCcEEEEe-CCCCC--------CCCCCeEECCCCC--CHHHHHhhcCE
Q 003222 222 DVKLLILNFGGQPAG--W------KLKEEYLPSGWKCLVC-GASDS--------QLPPNFIKLPKDA--YTPDFMAASDC 282 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~--~------~ll~~l~~~~~~~vv~-G~~~~--------~lp~nv~~~~~~~--~~pdlLa~adl 282 (838)
++++|.+..|+.... + ++.+.+...++.++++ |...+ ..-+++.+.+..+ .+..+|+.||+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSE
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCE
Confidence 567888888876532 1 2333444456777765 53221 0123555544332 23378889999
Q ss_pred EEec-CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCc-EEEEe-----cCCCChhhHHHHHHHHhhC
Q 003222 283 MLGK-IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQG-GVEMI-----RRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 283 ~It~-gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~-g~~l~-----~~~~~~~~l~~~l~~ll~~ 349 (838)
+||. +|.. -+ |.++|+|+|++=.+. + ..+.-=.|- ...+. ..+++++.+.+++.++++.
T Consensus 257 ~I~~DSG~~-Hl-Aaa~g~P~v~lfg~t--~----p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 257 VVSVDTGLS-HL-TAALDRPNITVYGPT--D----PGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEEESSHHH-HH-HHHTTCCEEEEESSS--C----HHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EEecCCcHH-HH-HHHcCCCEEEEECCC--C----hhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 9998 5533 33 777999999984211 1 111100111 12221 2456777888888777754
No 88
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=76.74 E-value=11 Score=40.58 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=34.2
Q ss_pred CCCceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 11 ASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 11 ~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
.+|++ |+++..-.|.|=.+-+.++|..|+++|++|.++...+
T Consensus 23 ~~~~~--i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 23 KDGTK--YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SCSCE--EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred cCCCE--EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34544 4446677789999999999999999999999997765
No 89
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=73.90 E-value=9.6 Score=39.12 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=26.2
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+++|+||+ +..-|. |..-..+|+++|.+ +|+|+++.+.
T Consensus 9 ~~~m~ILl-TNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~ 46 (261)
T 3ty2_A 9 TPKLRLLL-SNDDGV-YAKGLAILAKTLAD-LGEVDVVAPD 46 (261)
T ss_dssp --CCEEEE-ECSSCT-TCHHHHHHHHHHTT-TSEEEEEEES
T ss_pred CCCCeEEE-EcCCCC-CCHHHHHHHHHHHh-cCCEEEEecC
Confidence 44578865 455654 45556788999987 8999998764
No 90
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=73.06 E-value=4.3 Score=46.00 Aligned_cols=78 Identities=12% Similarity=-0.058 Sum_probs=56.1
Q ss_pred CeEECCCCC--CHHHHHhhcCEEEec---CChh-hHHHHHHcC---CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC
Q 003222 263 NFIKLPKDA--YTPDFMAASDCMLGK---IGYG-TVSEALAYK---LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD 333 (838)
Q Consensus 263 nv~~~~~~~--~~pdlLa~adl~It~---gG~~-Tv~Eal~~G---vP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~ 333 (838)
.|+++++.+ .++.+++.||+||.. =|+| +..|+++|| .|+|+-...+..++ +. ..|+.+++.+
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~------l~--~~allVnP~D 424 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEV------LG--EYCRSVNPFD 424 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHH------HG--GGSEEECTTB
T ss_pred CEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHH------hC--CCEEEECCCC
Confidence 467666543 356888999999964 3777 578999996 77777654443333 32 2478899877
Q ss_pred CChhhHHHHHHHHhhCC
Q 003222 334 LLTGHWKPYLERAISLK 350 (838)
Q Consensus 334 ~~~~~l~~~l~~ll~~~ 350 (838)
.+.++++|.++|+++
T Consensus 425 --~~~lA~AI~~aL~m~ 439 (496)
T 3t5t_A 425 --LVEQAEAISAALAAG 439 (496)
T ss_dssp --HHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHcCC
Confidence 468999999999876
No 91
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=71.58 E-value=10 Score=45.13 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=57.4
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCc-------------h--hhhHHhhCCCCcEEEEeCCC-----C--CCCCCCeEECC
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPA-------------G--WKLKEEYLPSGWKCLVCGAS-----D--SQLPPNFIKLP 268 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~-------------~--~~ll~~l~~~~~~~vv~G~~-----~--~~lp~nv~~~~ 268 (838)
+.+++.++++.++++||.+- +.-. . .+.+...+..++.+++-... . ...+..+..+.
T Consensus 526 ~~~~~~~~~~~~kk~ILyaP-T~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~Hp~~~~~~~~~~~~~~~~~~~ 604 (729)
T 3l7i_A 526 DEIRTHLNLPSDKKVIMYAP-TWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRMHYLISNALDLSGYENFAIDVS 604 (729)
T ss_dssp HHHHHHTTCCSSCEEEEECC-CCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECCCHHHHTTCCCTTCTTTEEECT
T ss_pred HHHHHHhCCCCCCeEEEEee-eeeCCccccccccccchhhHHHHHHHHcCCCeEEEEecCcchhccccccccCCcEEeCC
Confidence 45778899887888776643 2110 0 11122233456665542210 0 01233344333
Q ss_pred CCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeC
Q 003222 269 KDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRR 307 (838)
Q Consensus 269 ~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~ 307 (838)
-...+.++|..||++||--. +.+.|.+..++|+|+...
T Consensus 605 ~~~di~~ll~~aD~lITDyS-Sv~fD~~~l~kPiif~~~ 642 (729)
T 3l7i_A 605 NYNDVSELFLISDCLITDYS-SVMFDYGILKRPQFFFAY 642 (729)
T ss_dssp TCSCHHHHHHTCSEEEESSC-THHHHHGGGCCCEEEECT
T ss_pred CCcCHHHHHHHhCEEEeech-HHHHhHHhhCCCEEEecC
Confidence 22356799999999999655 678899999999999973
No 92
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=65.56 E-value=28 Score=36.70 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=32.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
+|+++..-.|.|=.+-+.++|.+|+++|++|.++...+
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 34456777889999999999999999999999997765
No 93
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=64.88 E-value=32 Score=35.06 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=24.8
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|+||+ +..-|. |..-..+|+++|++.| +|+++.+.
T Consensus 2 M~ILl-TNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~ 36 (251)
T 2phj_A 2 PTFLL-VNDDGY-FSPGINALREALKSLG-RVVVVAPD 36 (251)
T ss_dssp CEEEE-ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CEEEE-ECCCCC-CCHHHHHHHHHHHhcC-CEEEEecC
Confidence 46654 455553 4455678999999988 99998664
No 94
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=61.63 E-value=16 Score=39.61 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=30.0
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
+|+++..-.|.|-.+-+.++|..|+++|.+|.++..
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 344455556799999999999999999999999876
No 95
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=61.21 E-value=16 Score=39.07 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=32.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
+|+|+..-.|.|=.+-+.++|..|+++|.+|.++...+
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 45556777889999999999999999999999997764
No 96
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=57.75 E-value=48 Score=33.82 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=24.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|+||+ +.--|. |..=..+|+++|++.| +|+++.+.
T Consensus 2 M~ILl-TNDDGi-~apGi~aL~~~L~~~g-~V~VVAP~ 36 (254)
T 2v4n_A 2 MRILL-SNDDGV-HAPGIQTLAKALREFA-DVQVVAPD 36 (254)
T ss_dssp CEEEE-ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CeEEE-EcCCCC-CCHHHHHHHHHHHhCC-cEEEEeeC
Confidence 46654 455553 4445678999998875 99998764
No 97
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=55.54 E-value=50 Score=33.69 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCCcEEEE-CC--CchHHHHHHHhCCcEEEEec
Q 003222 117 IKADLVVS-DV--VPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 117 ~kPDlVVs-D~--~~~~~~aA~~lgIP~V~is~ 146 (838)
..||+||. |. ...++.=|..+|||+|++.|
T Consensus 157 ~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivD 189 (256)
T 2vqe_B 157 RLPDAIFVVDPTKEAIAVREARKLFIPVIALAD 189 (256)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHHTTCCCEECCC
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEec
Confidence 37999885 53 55677778899999999854
No 98
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=53.30 E-value=79 Score=32.69 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=23.4
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+||+ +.--|. |..=..+|+++|++.| +|+++.+.
T Consensus 2 ~ILl-TNDDGi-~ApGi~aL~~aL~~~g-~V~VVAP~ 35 (280)
T 1l5x_A 2 KILV-TNDDGV-HSPGLRLLYQFALSLG-DVDVVAPE 35 (280)
T ss_dssp EEEE-ECSSCT-TCHHHHHHHHHHGGGS-EEEEEEES
T ss_pred eEEE-EcCCCC-CcHhHHHHHHHHHhCC-CEEEEecC
Confidence 5544 445543 4444678999999888 89998664
No 99
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=52.35 E-value=52 Score=33.42 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=23.3
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+||+ +.--|. |..=..+|+++|++.| +|+++.+.
T Consensus 2 ~ILl-TNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~ 35 (247)
T 1j9j_A 2 RILV-TNDDGI-QSKGIIVLAELLSEEH-EVFVVAPD 35 (247)
T ss_dssp EEEE-ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred eEEE-EcCCCC-CcHhHHHHHHHHHhCC-CEEEEecC
Confidence 5543 445543 4444678999999887 89988664
No 100
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=48.68 E-value=1e+02 Score=31.15 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=23.3
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+||+ +.--|. |..=..+|+++|++.| +|+++.+.
T Consensus 2 ~ILl-TNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~ 35 (244)
T 2e6c_A 2 RILV-TNDDGI-YSPGLWALAEAASQFG-EVFVAAPD 35 (244)
T ss_dssp EEEE-ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEEC
T ss_pred eEEE-EcCCCC-CcHhHHHHHHHHHhCC-CEEEEecC
Confidence 5543 445543 4444678999999888 89998664
No 101
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=47.20 E-value=30 Score=33.66 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=27.5
Q ss_pred HHhhcCEEEe-cCChhhHHHHH---------HcCCcEEEEeCCCCCCh
Q 003222 276 FMAASDCMLG-KIGYGTVSEAL---------AYKLPFVFVRRDYFNEE 313 (838)
Q Consensus 276 lLa~adl~It-~gG~~Tv~Eal---------~~GvP~l~iP~~~~~EQ 313 (838)
++..+|+||. -||+||+-|.. .+++|++++....|.+.
T Consensus 105 m~~~sda~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~ 152 (189)
T 3sbx_A 105 MEDRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDG 152 (189)
T ss_dssp HHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHH
T ss_pred HHHHCCEEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchH
Confidence 3457999997 46777876654 26999999986566654
No 102
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=47.13 E-value=20 Score=32.64 Aligned_cols=43 Identities=5% Similarity=-0.079 Sum_probs=29.6
Q ss_pred CCCCceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
...|+++.|.+....++......++.+|......||+|.++-.
T Consensus 12 ~~~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~ 54 (134)
T 3mc3_A 12 EEQXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFM 54 (134)
T ss_dssp --CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 3445666664433223677888999999999999999987643
No 103
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=45.37 E-value=24 Score=30.75 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=29.1
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHC-CC-eEEEEeC
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA-GH-DVHVVTG 52 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~-Gh-~V~~v~~ 52 (838)
|+++.|++....+|......++.+|..+.+. || +|.++-.
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~ 42 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLM 42 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEE
Confidence 5666665444334667788889999999999 99 9976643
No 104
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=45.30 E-value=12 Score=42.90 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=27.6
Q ss_pred ceEEEEEeecC-------CCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 14 KHLVFAYYVTG-------HGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 14 ~~~~Il~~v~g-------~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
++|+|||..+. .|.|-+ +-+|.++|+++||+|+++++.
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadv--v~~L~~aL~~~G~~V~Vi~P~ 52 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDV--LGGLPPAMAANGHRVMVISPR 52 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHH--HHHHHHHHHTTTCEEEEEEEC
T ss_pred CCcEEEEEEEeccchhccCcHHHH--HHHHHHHHHHcCCeEEEEecC
Confidence 46899887532 233433 447899999999999999853
No 105
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=43.80 E-value=25 Score=35.07 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=34.4
Q ss_pred CCHH---HHH-hhcCEEEe-cCChhhHHHHH---------HcCCcEEEEeCCCCCChHHHH-HHHHHcCc
Q 003222 271 AYTP---DFM-AASDCMLG-KIGYGTVSEAL---------AYKLPFVFVRRDYFNEEPFLR-NMLEFYQG 325 (838)
Q Consensus 271 ~~~p---dlL-a~adl~It-~gG~~Tv~Eal---------~~GvP~l~iP~~~~~EQ~~Na-~~l~~~G~ 325 (838)
.+|+ .+| ..+|+||. -||+||+-|.. .+++|++++....|.+...+- +.+.+.|.
T Consensus 93 ~~~~~Rk~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gf 162 (216)
T 1ydh_A 93 ADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGF 162 (216)
T ss_dssp SSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCC
Confidence 4566 343 56999987 56777876665 479999999855455542221 34444443
No 106
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=43.64 E-value=49 Score=35.42 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=32.8
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHH--HCCCeEEEEeCCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLI--SAGHDVHVVTGAP 54 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~--~~Gh~V~~v~~~~ 54 (838)
.+|+++..-.|.|-.+-+.++|..|+ .+|++|.++...+
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 35555667788999999999999999 8999999997764
No 107
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=40.92 E-value=34 Score=30.76 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=26.1
Q ss_pred EEEEeecC--CCcccHHHHHHHHHHHHHCCCeE-EEEe
Q 003222 17 VFAYYVTG--HGFGHATRVVEVVRNLISAGHDV-HVVT 51 (838)
Q Consensus 17 ~Il~~v~g--~G~GHv~r~laLA~~L~~~Gh~V-~~v~ 51 (838)
++++.+++ +|.-....++.+|.++.+.||+| .++-
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff 39 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFF 39 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEE
Confidence 34444544 55567888899999999999999 7653
No 108
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=40.11 E-value=57 Score=32.23 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCceEEEEEeecCCCcccHHHHHHHHHHHHHCC--CeEEE-EeCC
Q 003222 11 ASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHV-VTGA 53 (838)
Q Consensus 11 ~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~G--h~V~~-v~~~ 53 (838)
..|.+.+|.++++|.| |. +.++.+++.+.+ ++|.. +|..
T Consensus 3 ~~m~~~ri~vl~SG~g--sn--l~all~~~~~~~l~~~I~~Visn~ 44 (209)
T 4ds3_A 3 GSMKRNRVVIFISGGG--SN--MEALIRAAQAPGFPAEIVAVFSDK 44 (209)
T ss_dssp ---CCEEEEEEESSCC--HH--HHHHHHHHTSTTCSEEEEEEEESC
T ss_pred CcCCCccEEEEEECCc--HH--HHHHHHHHHcCCCCcEEEEEEECC
Confidence 3588888988877664 44 556777776543 57764 4543
No 109
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=39.00 E-value=38 Score=34.02 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=22.2
Q ss_pred CCcEEEE-CC--CchHHHHHHHhCCcEEEEec
Q 003222 118 KADLVVS-DV--VPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 118 kPDlVVs-D~--~~~~~~aA~~lgIP~V~is~ 146 (838)
.||+||. |. ...++.=|..+|||+|++.|
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivD 188 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLID 188 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCC
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEec
Confidence 5999985 53 55667678889999999844
No 110
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=38.87 E-value=26 Score=32.83 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHhhcCEEEe---cCChhhHHH---HHHcCCcEEEEeCCCCCChHHHHHHHHHcCc---EEEEecCCCChhhHHHHHHH
Q 003222 275 DFMAASDCMLG---KIGYGTVSE---ALAYKLPFVFVRRDYFNEEPFLRNMLEFYQG---GVEMIRRDLLTGHWKPYLER 345 (838)
Q Consensus 275 dlLa~adl~It---~gG~~Tv~E---al~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~---g~~l~~~~~~~~~l~~~l~~ 345 (838)
+.|..||++|. ....||.+| |.+.|+|++++-.+... + ....++.-..- -.+...++ +.+.+.|.+
T Consensus 64 ~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~-~-~ls~mi~G~~~~~~~~~~~Y~~---~el~~il~~ 138 (152)
T 4fyk_A 64 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSG-R-VLSAMIRGAADGSRFQVWDYAE---GEVETMLDR 138 (152)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGS-C-CCCHHHHHHCCSSSEEEEECCT---TCHHHHHHH
T ss_pred HHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCcc-c-hhHHHHcCCCCCCeEEEEEecH---HHHHHHHHH
Confidence 56778999996 457789988 57899999998643211 1 12334443321 22233333 567777777
Q ss_pred Hhh
Q 003222 346 AIS 348 (838)
Q Consensus 346 ll~ 348 (838)
.++
T Consensus 139 f~~ 141 (152)
T 4fyk_A 139 YFE 141 (152)
T ss_dssp HHC
T ss_pred HHH
Confidence 664
No 111
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=38.63 E-value=75 Score=31.80 Aligned_cols=34 Identities=12% Similarity=0.273 Sum_probs=22.7
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHC--CCeEE-EEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVH-VVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~-~v~~~ 53 (838)
++|+|+++|.| + .+.++.++|.+. +++|. +++..
T Consensus 23 ~rI~~l~SG~g--~--~~~~~l~~l~~~~~~~~I~~Vvt~~ 59 (229)
T 3auf_A 23 IRIGVLISGSG--T--NLQAILDGCREGRIPGRVAVVISDR 59 (229)
T ss_dssp EEEEEEESSCC--H--HHHHHHHHHHTTSSSEEEEEEEESS
T ss_pred cEEEEEEeCCc--H--HHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 57777766664 3 377888888876 57775 45543
No 112
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=38.34 E-value=39 Score=29.98 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=28.7
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEe
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVT 51 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~ 51 (838)
|+++.|++..+.+|.-...-++.+|.++...||+|.++-
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vff 39 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFF 39 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEE
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 677777555444555556778999999999999997653
No 113
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=37.39 E-value=36 Score=31.14 Aligned_cols=41 Identities=22% Similarity=0.049 Sum_probs=29.2
Q ss_pred CCceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 12 ~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
.|+++.|++..+.+|.-....++.+|.++...||+|.++-.
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~ 44 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFL 44 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 37766665544445555677789999999999999976633
No 114
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=35.85 E-value=42 Score=32.90 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=26.8
Q ss_pred HHhhcCEEEec-CChhhHHHH---HH------cCCcEEEEeCCCCCCh
Q 003222 276 FMAASDCMLGK-IGYGTVSEA---LA------YKLPFVFVRRDYFNEE 313 (838)
Q Consensus 276 lLa~adl~It~-gG~~Tv~Ea---l~------~GvP~l~iP~~~~~EQ 313 (838)
++..+|+||.- ||+||+-|. +. +++|++++....|.+.
T Consensus 114 m~~~sda~IalPGG~GTldEl~e~lt~~qlg~~~kPvvlln~~gfw~~ 161 (199)
T 3qua_A 114 MEHRSDAFIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLDPFGHYDG 161 (199)
T ss_dssp HHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTSTTHH
T ss_pred HHHhcCccEEeCCCccHHHHHHHHHHHHHhccCCCCEEEEcCCccchH
Confidence 34569999974 667776655 44 5999999986556553
No 115
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=35.66 E-value=40 Score=34.97 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=26.7
Q ss_pred CCCCceEEEEEeecCCCcccHHHHH--HHHHHHHHCCCeEEEEeC
Q 003222 10 SASSKHLVFAYYVTGHGFGHATRVV--EVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GHv~r~l--aLA~~L~~~Gh~V~~v~~ 52 (838)
+-.|+.||||++..-+-....+.++ .+++.|+++||+|+++-.
T Consensus 17 ~~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 17 NLYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp -----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred cchhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3458888988876444434344443 567889999999999854
No 116
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=34.84 E-value=87 Score=30.93 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=22.7
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCC--eEE-EEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGH--DVH-VVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh--~V~-~v~~~ 53 (838)
++|+|+++|.| + .+.++.++|.+.++ +|. ++|..
T Consensus 2 ~rI~vl~SG~g--~--~~~~~l~~l~~~~~~~~i~~Vvs~~ 38 (216)
T 2ywr_A 2 LKIGVLVSGRG--S--NLQAIIDAIESGKVNASIELVISDN 38 (216)
T ss_dssp EEEEEEECSCC--H--HHHHHHHHHHTTSSCEEEEEEEESC
T ss_pred CEEEEEEeCCc--H--HHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 45666666664 3 47788899998887 664 45553
No 117
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=31.32 E-value=53 Score=30.98 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=41.1
Q ss_pred HHHhhcCEEEec---CChhhHHH---HHHcCCcEEEEeCCCCCChHHHHHHHHHcCc---EEEEecCCCChhhHHHHHHH
Q 003222 275 DFMAASDCMLGK---IGYGTVSE---ALAYKLPFVFVRRDYFNEEPFLRNMLEFYQG---GVEMIRRDLLTGHWKPYLER 345 (838)
Q Consensus 275 dlLa~adl~It~---gG~~Tv~E---al~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~---g~~l~~~~~~~~~l~~~l~~ 345 (838)
.+|..||++|.- ...||.+| |.+.|+|++++-.... +...|.- +.-... -..+.. + .+.+...|.+
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt~~EiGyA~algKPVi~l~~~~~-~~~~n~M-~~g~~~~~~~~~~~y-~--~~el~~~l~~ 147 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQS-GRVLSAM-IRGAADGSRFQVWDY-A--EGEVETMLDR 147 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTCSSEEEEECTTT-TCCCCHH-HHHTCCSSSEEEEEC-C--TTTHHHHHHH
T ss_pred HHHHhCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEcCCC-CCcchhh-hcccCccceeEEEec-C--HHHHHHHHHH
Confidence 577889999864 47789999 5678999999864331 1223332 433322 122333 3 3456666666
Q ss_pred Hhh
Q 003222 346 AIS 348 (838)
Q Consensus 346 ll~ 348 (838)
.+.
T Consensus 148 ~~~ 150 (165)
T 2khz_A 148 YFE 150 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 118
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=30.94 E-value=38 Score=32.49 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=28.1
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
.+|++.++|. ..+..+..+.+.|+++|++|+++...
T Consensus 6 k~IllgvTGs--~aa~k~~~ll~~L~~~g~~V~vv~T~ 41 (175)
T 3qjg_A 6 ENVLICLCGS--VNSINISHYIIELKSKFDEVNVIAST 41 (175)
T ss_dssp CEEEEEECSS--GGGGGHHHHHHHHTTTCSEEEEEECT
T ss_pred CEEEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 4676677654 55667899999999999999887554
No 119
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=30.16 E-value=49 Score=32.45 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=29.6
Q ss_pred ceEEEEEeecCCCcccHH-HHHHHHHHHHHCCCeEEEEeCC
Q 003222 14 KHLVFAYYVTGHGFGHAT-RVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~-r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+..+|++.++|. +.+. -+..+.+.|+++|++|+++-..
T Consensus 6 ~~k~I~lgiTGs--~aa~~k~~~ll~~L~~~g~eV~vv~T~ 44 (201)
T 3lqk_A 6 AGKHVGFGLTGS--HCTYHEVLPQMERLVELGAKVTPFVTH 44 (201)
T ss_dssp TTCEEEEECCSC--GGGGGGTHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEEECh--HHHHHHHHHHHHHHhhCCCEEEEEECh
Confidence 345677777664 6666 8999999999999999987554
No 120
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=29.34 E-value=27 Score=31.36 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCcEEEECCC-c--hHHHHHH---HhCCcEEEEecC
Q 003222 108 KDEVEWLNSIKADLVVSDVV-P--VACRAAA---DAGIRSVCVTNF 147 (838)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~~-~--~~~~aA~---~lgIP~V~is~~ 147 (838)
.+..+++++.+||+|+.|.. | -|..+++ ..++|+|.+|.+
T Consensus 43 ~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 43 QEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGY 88 (123)
T ss_dssp HHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCTT
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEecC
Confidence 34466788899999999962 2 2333333 347898777543
No 121
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=29.04 E-value=53 Score=31.17 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=26.9
Q ss_pred HHHhhcCEEEe-----cCChhhHHH---HHHcCCcEEEEe
Q 003222 275 DFMAASDCMLG-----KIGYGTVSE---ALAYKLPFVFVR 306 (838)
Q Consensus 275 dlLa~adl~It-----~gG~~Tv~E---al~~GvP~l~iP 306 (838)
+.|..||++|. ....||.+| |.+.|+|++++.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 56678999997 567789998 678999999995
No 122
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=27.50 E-value=52 Score=32.73 Aligned_cols=27 Identities=7% Similarity=0.020 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 28 GHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 28 GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
-++..+..+...+.++|-+|.|++..+
T Consensus 40 ~~L~~A~~~i~~~~~~~~~iLfVgTk~ 66 (218)
T 3r8n_B 40 PMFNEALAELNKIASRKGKILFVGTKR 66 (218)
T ss_dssp GGTTTHHHHHHHHHHTTCCCCEECCCT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 456777888888888899999997754
No 123
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=26.34 E-value=80 Score=31.63 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHhcCCCcEEEECC---CchHHHHHHH----hCCcEEEEec
Q 003222 112 EWLNSIKADLVVSDV---VPVACRAAAD----AGIRSVCVTN 146 (838)
Q Consensus 112 ~~L~~~kPDlVVsD~---~~~~~~aA~~----lgIP~V~is~ 146 (838)
++.++|+||+||.-. ...|...|+. .|+|+|.+++
T Consensus 58 ~~~~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D 99 (283)
T 1qv9_A 58 DIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGD 99 (283)
T ss_dssp HHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEE
T ss_pred hhhhhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcC
Confidence 334899999999653 3345555543 4999999977
No 124
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.82 E-value=2e+02 Score=31.88 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=25.8
Q ss_pred HHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEE
Q 003222 111 VEWLNSIKADLVVSDVVPVACRAAADAGIRSVCV 144 (838)
Q Consensus 111 ~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~i 144 (838)
.+++++.+||++++... +..+|+++|||++.+
T Consensus 368 e~~i~~~~pDllig~~~--~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 368 EHAARAGQAQLVIGNSH--ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHTCSEEEECTT--HHHHHHHTTCCEEEC
T ss_pred HHHHHhcCCCEEEEChh--HHHHHHHcCCCEEEe
Confidence 35678889999999864 456789999999876
No 125
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=25.47 E-value=82 Score=30.80 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=31.9
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
.|.+.....|.|=.+-+..||..|+++|++|.++-..+
T Consensus 4 ~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 4 IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 45556677889999999999999999999999986543
No 126
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=25.00 E-value=69 Score=31.59 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=21.3
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEE-EeC
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHV-VTG 52 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~-v~~ 52 (838)
|+++.| +++|. |+ .+.++.++|.+. +++|.. ++.
T Consensus 3 m~ki~v--l~sG~--g~--~~~~~l~~l~~~~l~~~I~~Vit~ 39 (212)
T 3av3_A 3 MKRLAV--FASGS--GT--NFQAIVDAAKRGDLPARVALLVCD 39 (212)
T ss_dssp CEEEEE--ECCSS--CH--HHHHHHHHHHTTCCCEEEEEEEES
T ss_pred CcEEEE--EEECC--cH--HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 655554 44444 54 366788888877 688864 454
No 127
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=24.98 E-value=40 Score=34.63 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=38.6
Q ss_pred hcCEEEecCChhhHHHHHHc------CCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 279 ASDCMLGKIGYGTVSEALAY------KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 279 ~adl~It~gG~~Tv~Eal~~------GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
.+|++|+-||-||+.+++.. ++|++.||.. ..|. + .++.++++.++++.+++.
T Consensus 35 ~~D~vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G-------------~lgf---l--~~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 35 EPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTG-------------HLGF---Y--ADWRPAEADKLVKLLAKG 93 (272)
T ss_dssp SCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESS-------------SCCS---S--CCBCGGGHHHHHHHHHTT
T ss_pred CCCEEEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCC-------------CCCc---C--CcCCHHHHHHHHHHHHcC
Confidence 47999999999999998875 8999999831 1121 1 133456778888888753
No 128
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=24.89 E-value=40 Score=34.36 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=39.3
Q ss_pred hcCEEEecCChhhHHHHHHc---CCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 279 ASDCMLGKIGYGTVSEALAY---KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 279 ~adl~It~gG~~Tv~Eal~~---GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
.+|++|+-||-||+.+++.. ++|++.|+. +. .|.- . ++.++++.++++.+++.
T Consensus 41 ~~D~vv~~GGDGTll~~a~~~~~~~PilGIn~-G~------------~Gfl--~---~~~~~~~~~al~~i~~g 96 (258)
T 1yt5_A 41 TADLIVVVGGDGTVLKAAKKAADGTPMVGFKA-GR------------LGFL--T---SYTLDEIDRFLEDLRNW 96 (258)
T ss_dssp CCSEEEEEECHHHHHHHHTTBCTTCEEEEEES-SS------------CCSS--C---CBCGGGHHHHHHHHHTT
T ss_pred CCCEEEEEeCcHHHHHHHHHhCCCCCEEEEEC-CC------------CCcc--C---cCCHHHHHHHHHHHHcC
Confidence 48999999999999999987 899999983 21 1222 1 23456788888888754
No 129
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=24.46 E-value=74 Score=30.06 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=26.1
Q ss_pred HHHhhcCEEEec-----CChhhHHH---HHHcCCcEEEEeC
Q 003222 275 DFMAASDCMLGK-----IGYGTVSE---ALAYKLPFVFVRR 307 (838)
Q Consensus 275 dlLa~adl~It~-----gG~~Tv~E---al~~GvP~l~iP~ 307 (838)
..|..||++|.- ...||.+| |.+.|+|++++-.
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~ 105 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYT 105 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEc
Confidence 466789999972 24789998 5789999999863
No 130
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=24.41 E-value=1.1e+02 Score=29.19 Aligned_cols=30 Identities=33% Similarity=0.480 Sum_probs=22.8
Q ss_pred hhcCEEEec-CChhh---HHHHHHcCCcEEEEeC
Q 003222 278 AASDCMLGK-IGYGT---VSEALAYKLPFVFVRR 307 (838)
Q Consensus 278 a~adl~It~-gG~~T---v~Eal~~GvP~l~iP~ 307 (838)
..+|+||.- ||.|| +.|++.+++|++++|.
T Consensus 106 ~~sda~IvlpGg~GTL~E~~~al~~~kpV~~l~~ 139 (176)
T 2iz6_A 106 LSSNVLVAVGMGPGTAAEVALALKAKKPVVLLGT 139 (176)
T ss_dssp GGCSEEEEESCCHHHHHHHHHHHHTTCCEEEESC
T ss_pred HhCCEEEEecCCccHHHHHHHHHHhCCcEEEEcC
Confidence 459988864 55665 4577789999999984
No 131
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=24.19 E-value=57 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=20.6
Q ss_pred CcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 26 GFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 26 G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|.|++. ..+++.|.+.||+|+++...
T Consensus 10 G~G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 10 GHSILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CCCHHH--HHHHHHHHHCCCCEEEEECC
Confidence 446665 57889999999999999764
No 132
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=23.60 E-value=2.5e+02 Score=27.59 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=13.6
Q ss_pred HHHHHhcCCCcEEEEC
Q 003222 110 EVEWLNSIKADLVVSD 125 (838)
Q Consensus 110 ~~~~L~~~kPDlVVsD 125 (838)
..+.|++++||+||+-
T Consensus 75 ~~~~l~~~~~Dliv~a 90 (215)
T 3tqr_A 75 LQKTIDHYDPKLIVLA 90 (215)
T ss_dssp HHHHHHTTCCSEEEES
T ss_pred HHHHHHhcCCCEEEEc
Confidence 4677899999999975
No 133
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=22.97 E-value=55 Score=32.23 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=30.7
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+|.+ +.-.|.|=.+-+..||..|+++|++|.++-..
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 37 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5766 66778999999999999999999999988544
No 134
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=22.69 E-value=1.4e+02 Score=29.40 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHC--CCeEE-EEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISA--GHDVH-VVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~-~v~~~ 53 (838)
+|.++++|.| + -..+|.+++.+. +|+|. ++|..
T Consensus 2 ri~vl~Sg~g--s--nl~ali~~~~~~~~~~~i~~Vis~~ 37 (212)
T 1jkx_A 2 NIVVLISGNG--S--NLQAIIDACKTNKIKGTVRAVFSNK 37 (212)
T ss_dssp EEEEEESSCC--H--HHHHHHHHHHTTSSSSEEEEEEESC
T ss_pred EEEEEEECCc--H--HHHHHHHHHHcCCCCceEEEEEeCC
Confidence 5666666665 4 366778888775 57875 44553
No 135
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=22.49 E-value=1e+02 Score=27.75 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=26.2
Q ss_pred CceEEEEEeecCCCcccHHHH-HHHHHHHHHCCCeEEEEeCC
Q 003222 13 SKHLVFAYYVTGHGFGHATRV-VEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~-laLA~~L~~~Gh~V~~v~~~ 53 (838)
|+++.|+|++ ..|+.... ..+++.|.+.|++|.++...
T Consensus 1 M~ki~I~y~S---~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 1 MSKVLIVFGS---STGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp -CEEEEEEEC---SSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCeEEEEEEC---CCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 6677776654 34666544 46788888899999887653
No 136
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=22.45 E-value=96 Score=29.98 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=29.7
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEE
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v 50 (838)
.|++..+..|.|=.+-+..||.+|+++|++|.++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 3555667788999999999999999999999986
No 137
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=22.43 E-value=95 Score=27.99 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHhcCCCcEEEECC-Cc--hHHHHHHH-------hCCcEEEEecCc
Q 003222 111 VEWLNSIKADLVVSDV-VP--VACRAAAD-------AGIRSVCVTNFS 148 (838)
Q Consensus 111 ~~~L~~~kPDlVVsD~-~~--~~~~aA~~-------lgIP~V~is~~~ 148 (838)
.+.+++.+||+|+.|. .| -|.-+++. .++|+|.+|...
T Consensus 50 l~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 50 LPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 4456777999999996 22 25544433 369999887655
No 138
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=22.34 E-value=76 Score=29.91 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHhhcCEEEec--------CChhhHHH---HHHcCCcEEEEeC
Q 003222 275 DFMAASDCMLGK--------IGYGTVSE---ALAYKLPFVFVRR 307 (838)
Q Consensus 275 dlLa~adl~It~--------gG~~Tv~E---al~~GvP~l~iP~ 307 (838)
..|..||++|.- .-.||.+| |.+.|||++++..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 567789999865 35679998 5679999999863
No 139
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=22.24 E-value=46 Score=34.40 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=26.7
Q ss_pred HHHhhcCEEEecCChhhHHHHHHc----CCcEEEEe
Q 003222 275 DFMAASDCMLGKIGYGTVSEALAY----KLPFVFVR 306 (838)
Q Consensus 275 dlLa~adl~It~gG~~Tv~Eal~~----GvP~l~iP 306 (838)
+.-..+|++|+-||-||+.|++.. ++|+|.|+
T Consensus 59 ~~~~~~D~vi~~GGDGT~l~a~~~~~~~~~P~lGI~ 94 (292)
T 2an1_A 59 EIGQQADLAVVVGGDGNMLGAARTLARYDINVIGIN 94 (292)
T ss_dssp HHHHHCSEEEECSCHHHHHHHHHHHTTSSCEEEEBC
T ss_pred hcccCCCEEEEEcCcHHHHHHHHHhhcCCCCEEEEE
Confidence 333469999999999999999843 88999997
No 140
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=21.91 E-value=1.1e+02 Score=30.45 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=30.3
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEe
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVT 51 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~ 51 (838)
|+. |++.-++.|.|=.+-+..|+++|+++|.+|.++-
T Consensus 4 mk~--i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 4 MKK--FFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp CEE--EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcE--EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 544 3335677889999999999999999999998873
No 141
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=21.70 E-value=1.3e+02 Score=29.80 Aligned_cols=16 Identities=31% Similarity=0.208 Sum_probs=13.2
Q ss_pred HHHHHhcCCCcEEEEC
Q 003222 110 EVEWLNSIKADLVVSD 125 (838)
Q Consensus 110 ~~~~L~~~kPDlVVsD 125 (838)
..+.|++++||+||+-
T Consensus 81 ~~~~l~~~~~Dlivla 96 (215)
T 3da8_A 81 ITAATAAHEPDLVVSA 96 (215)
T ss_dssp HHHHHHTTCCSEEEEE
T ss_pred HHHHHHhhCCCEEEEc
Confidence 4677899999999964
No 142
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=21.63 E-value=88 Score=29.66 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=31.4
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
|.+...-.|.|=.+-+..||..|+++|++|.++-..+
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4456677889999999999999999999999986654
No 143
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.62 E-value=1.4e+02 Score=29.74 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=32.1
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~ 54 (838)
+++| |+...+|.|=.+-++.+|.+|.++|++|.++...+
T Consensus 6 ~l~I-~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKV-FLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEE-EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEE-EEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4666 44577889999999999999999999998876543
No 144
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=21.54 E-value=1e+02 Score=30.56 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=29.4
Q ss_pred CCHH---HHH-hhcCEEEe-cCChhhHHHHH---H------cCCcEEEEeCCCCCCh
Q 003222 271 AYTP---DFM-AASDCMLG-KIGYGTVSEAL---A------YKLPFVFVRRDYFNEE 313 (838)
Q Consensus 271 ~~~p---dlL-a~adl~It-~gG~~Tv~Eal---~------~GvP~l~iP~~~~~EQ 313 (838)
.+|+ .+| ..+|+||. -||+||+-|.. . +++|++++....|.+.
T Consensus 97 ~~f~~Rk~~~~~~sda~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~g~w~~ 153 (215)
T 2a33_A 97 ADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 153 (215)
T ss_dssp SSHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGTTHH
T ss_pred CCHHHHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecCcchhHH
Confidence 4566 344 46999886 56777876655 3 3899999986555543
No 145
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=21.51 E-value=1.3e+02 Score=25.51 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=24.7
Q ss_pred HHHHhcCCCcEEEECCCc---hHHHHHHH-------hCCcEEEEecCc
Q 003222 111 VEWLNSIKADLVVSDVVP---VACRAAAD-------AGIRSVCVTNFS 148 (838)
Q Consensus 111 ~~~L~~~kPDlVVsD~~~---~~~~aA~~-------lgIP~V~is~~~ 148 (838)
.+.+++.+||+|+.|... -|.-+.+. .++|++.++...
T Consensus 39 l~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 39 LEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 445678899999999622 24433332 258998887644
No 146
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=21.49 E-value=76 Score=32.38 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=22.5
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|||| ++| |.|.+- ..|+++|.++||+|+.++..
T Consensus 1 MkIL--VTG-atGfIG--~~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 1 MRVL--VGG-GTGFIG--TALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp CEEE--EET-TTSHHH--HHHHHHHHHTTCEEEEEESS
T ss_pred CEEE--EEC-CCCHHH--HHHHHHHHHCCCEEEEEECC
Confidence 4563 333 335443 45789999999999998754
No 147
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=21.48 E-value=68 Score=31.57 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=29.6
Q ss_pred CCCCceEEEEEeecCCCcccHHHHHHHHHHHHH-CCCeEEEEeCCC
Q 003222 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLIS-AGHDVHVVTGAP 54 (838)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~-~Gh~V~~v~~~~ 54 (838)
.-.|+..+|++.++|. ..+.-+..+++.|++ .|++|.++....
T Consensus 14 ~~~l~~k~IllgvTGs--iaa~k~~~lv~~L~~~~g~~V~vv~T~~ 57 (206)
T 1qzu_A 14 PLMERKFHVLVGVTGS--VAALKLPLLVSKLLDIPGLEVAVVTTER 57 (206)
T ss_dssp --CCSSEEEEEEECSS--GGGGTHHHHHHHHC---CEEEEEEECTG
T ss_pred hcccCCCEEEEEEeCh--HHHHHHHHHHHHHhcccCCEEEEEECHh
Confidence 3345667888887655 556677999999999 899998876543
No 148
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=21.33 E-value=80 Score=31.16 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=27.7
Q ss_pred CCCCCceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 9 VSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 9 ~~~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
.+..++..+|++.++|. ..+..+..+.+.|++.| +|.++...
T Consensus 13 ~~~~l~~k~IllgvTGs--iaa~k~~~ll~~L~~~g-~V~vv~T~ 54 (209)
T 1mvl_A 13 VNTTPRKPRVLLAASGS--VAAIKFGNLCHCFTEWA-EVRAVVTK 54 (209)
T ss_dssp ------CCEEEEEECSS--GGGGGHHHHHHHHHTTS-EEEEEECT
T ss_pred cccccCCCEEEEEEeCc--HHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 34556667888787655 34455899999999999 99887554
No 149
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=21.05 E-value=75 Score=31.30 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=28.2
Q ss_pred eEEEEEeecCCCcccHHH-HHHHHHHHHHCCCeEEEEeCC
Q 003222 15 HLVFAYYVTGHGFGHATR-VVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r-~laLA~~L~~~Gh~V~~v~~~ 53 (838)
..+|++.++|. +.+.- +..+.+.|+++|++|.++-..
T Consensus 5 ~k~IllgiTGs--iaayk~~~~ll~~L~~~g~eV~vv~T~ 42 (207)
T 3mcu_A 5 GKRIGFGFTGS--HCTYEEVMPHLEKLIAEGAEVRPVVSY 42 (207)
T ss_dssp TCEEEEEECSC--GGGGTTSHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEEEECh--HHHHHHHHHHHHHHHhCCCEEEEEEeh
Confidence 35677788774 44554 899999999999999887554
No 150
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=20.50 E-value=1.1e+02 Score=27.60 Aligned_cols=39 Identities=13% Similarity=-0.043 Sum_probs=31.2
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~ 52 (838)
|++.++++. +..|-+|-....-++..|+..|++|.+...
T Consensus 1 ~~~~~vvla-~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~ 39 (137)
T 1ccw_A 1 MEKKTIVLG-VIGSDCHAVGNKILDHAFTNAGFNVVNIGV 39 (137)
T ss_dssp CCCCEEEEE-EETTCCCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEE-eCCCchhHHHHHHHHHHHHHCCCEEEECCC
Confidence 555566555 445669999999999999999999998755
No 151
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=20.42 E-value=64 Score=31.06 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=26.4
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
+|++.++|. ..+.-+..+.+.|+++|++|.++...
T Consensus 4 ~IllgvTGs--~aa~k~~~l~~~L~~~g~~V~vv~T~ 38 (181)
T 1g63_A 4 KLLICATAS--INVININHYIVELKQHFDEVNILFSP 38 (181)
T ss_dssp CEEEEECSC--GGGGGHHHHHHHHTTTSSCEEEEECG
T ss_pred EEEEEEECH--HHHHHHHHHHHHHHHCCCEEEEEEch
Confidence 355566544 56668899999999999999887553
Done!