BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003224
(838 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN)
GN=relA PE=3 SV=1
Length = 787
Score = 149 bits (376), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 117/202 (57%), Gaps = 21/202 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N VQ+A A + H Q R++GDPY+TH + ILA L + T+VA
Sbjct: 72 YPKANLSIVQRAFEVADQRHASQLRRSGDPYITHPLAVANILAEL-----GMDITTLVAA 126
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFGDEV LV GV++L + LG E
Sbjct: 127 LLHDTVEDTGYTLEALSEEFGDEVGHLVDGVTKLDRV---------------VLGSAAEG 171
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 172 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 231
Query: 275 ALKAELEDLCFAVLQPQIFRKM 296
++K ELEDL FA+L P+ + ++
Sbjct: 232 SVKWELEDLSFAILHPKKYEEI 253
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 418 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 477
++ T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 284 IKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------IRDCYAAVGV 334
Query: 478 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 537
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE+G+AAHW
Sbjct: 335 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHW 394
Query: 538 LYKETGNK 545
YKE +
Sbjct: 395 RYKEAKGR 402
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 783 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 836
+ V P G+++ L +GST D A V E G + VNG+LV +L++G+ VE+
Sbjct: 449 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEFVEI 506
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT
PE=3 SV=1
Length = 760
Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 112/193 (58%), Gaps = 17/193 (8%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H Q RK+G+PY+ H + +L L G A+ + AG LHDVV+D
Sbjct: 56 RAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDL---GGDEAM--IAAGFLHDVVEDTD 110
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
S+ IE FG+E A LV GV++LS N + +A + R M L M
Sbjct: 111 ISIEQIEALFGEETASLVEGVTKLS------------KFNFSSTTEHQAENFRRMFLAMA 158
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ AL P K R +A+ET I+ LA+RLG+W K ELEDL F
Sbjct: 159 KDIRVIVVKLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRLGIWRFKWELEDLSF 218
Query: 286 AVLQPQIFRKMRA 298
L+P +RK+++
Sbjct: 219 KYLEPDSYRKIQS 231
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 10/134 (7%)
Query: 422 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 481
L R K LY I+ KM +D ++YD ALR++V K CY L +VH +
Sbjct: 265 LQGRPKHLYGIYYKMTSQDKAFEEIYDIAALRIIVESKGE---------CYRALSVVHDV 315
Query: 482 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 541
+ PI G F DYI PKP+ YQSLHT V G LE+QIRT++MH AE+G+AAHW YKE
Sbjct: 316 FKPIPGRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKE 375
Query: 542 T-GNKLQSISSMDE 554
+ G++ +++S DE
Sbjct: 376 SGGSENATLTSTDE 389
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 736 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 795
S + K LR +L W+ L+ ++ K N D V V P GE++ L
Sbjct: 385 TSTDEKFTWLRQLLDWQSDLKDAQEYVENL---KQNLFDDDVY------VFTPKGEVISL 435
Query: 796 RSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 836
G+T D A + VG K VNGQ + +T LK+GDIVE+
Sbjct: 436 ARGATPVDFAYRIHTEVGHHMKGARVNGQWLGVDTRLKNGDIVEI 480
>sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex
aeolicus (strain VF5) GN=spoT PE=3 SV=1
Length = 696
Score = 142 bits (359), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 115/196 (58%), Gaps = 20/196 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++Q+A FAK H Q RKTG+PY+ H ++ LA L +T++A +LHD +
Sbjct: 25 EEIQRAYEFAKEKHGEQKRKTGEPYIIHPLNVALKLAELGMDH-----ETIIAALLHDTL 79
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+E FG+ VAKLV GV+++ I E+A + R ++
Sbjct: 80 EDTDTTYEEIKERFGERVAKLVEGVTKIGKIK---------------YKSEQAENYRKLI 124
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L +DPRV+L+KL+DRL N++T++ K + +A+ET+ I+ LA RLG+W++K ELE
Sbjct: 125 LATAEDPRVILLKLSDRLDNVKTLWVFREEKRKKIAKETMEIYAPLAHRLGVWSIKNELE 184
Query: 282 DLCFAVLQPQIFRKMR 297
D F L P+ + K+R
Sbjct: 185 DWAFKYLYPEEYEKVR 200
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G+E + R K YSI+ K RRK + + V+D +R++V + CY++L
Sbjct: 230 GIEAEIKYRSKHYYSIWEKTRRKGIRLEDVHDILGVRIIVN---------TVPECYTVLG 280
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
I+H L+ P+ G+F DYI PKP+ YQSLHT V G +E QIRT +MHE AE G+A+H
Sbjct: 281 IIHSLFRPVPGKFKDYISLPKPNLYQSLHTTVIADKGKLVEFQIRTWEMHERAEKGIASH 340
Query: 537 WLYKETGN 544
W YKE N
Sbjct: 341 WAYKEGKN 348
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 769 KANGNPDSVVPG-------EVVIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLV 817
+ + NP V+ E V V P G+++ L GST D A K VG
Sbjct: 366 QGSTNPSEVLENLKSNLFFEEVFVFTPKGDLVVLPKGSTPVDLAYKIHTEVGNHCAGAKS 425
Query: 818 NGQLVLPNTELKDGDIVEV 836
NG++V N ELK GD+VE+
Sbjct: 426 NGRIVPLNYELKSGDVVEI 444
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=relA PE=3 SV=1
Length = 790
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 116/202 (57%), Gaps = 21/202 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H Q R++GDPY+TH + ILA L T+VA
Sbjct: 75 YPKADLSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAEL-----GMDTTTLVAA 129
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 130 LLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 174
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 175 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 234
Query: 275 ALKAELEDLCFAVLQPQIFRKM 296
++K ELEDL FA+L P+ + ++
Sbjct: 235 SVKWELEDLSFAILHPKKYEEI 256
Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 418 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 477
++ T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 287 IKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 337
Query: 478 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 537
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE+G+AAHW
Sbjct: 338 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHW 397
Query: 538 LYKETGNK 545
YKE +
Sbjct: 398 RYKEAKGR 405
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 783 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 836
+ V P G+++ L +GST D A V E G + VNG+LV +L++G++VEV
Sbjct: 452 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEV 509
>sp|P66014|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium
tuberculosis GN=relA PE=1 SV=2
Length = 738
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 117/202 (57%), Gaps = 21/202 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H Q R++GDPY+TH + ILA L + T+VA
Sbjct: 23 YPKADLSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDT-----TTLVAA 77
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 78 LLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 122
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 123 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 182
Query: 275 ALKAELEDLCFAVLQPQIFRKM 296
++K ELEDL FA+L P+ + ++
Sbjct: 183 SVKWELEDLSFAILHPKKYEEI 204
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 418 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 477
++ T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 235 IKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 285
Query: 478 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 537
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE+G+AAHW
Sbjct: 286 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHW 345
Query: 538 LYKETGNK 545
YKE +
Sbjct: 346 RYKEAKGR 353
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 783 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 836
+ V P G+++ L +GST D A V E G + VNG+LV +L++G++VEV
Sbjct: 400 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEV 457
>sp|P43811|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=spoT PE=3 SV=1
Length = 677
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 111/188 (59%), Gaps = 17/188 (9%)
Query: 110 FAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLG 169
A+ AH GQFR +G+PY+TH + I+A L + V+A +LHDV++D +
Sbjct: 2 IARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EAVMAALLHDVIEDTPYTEE 56
Query: 170 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPR 229
++EEFG VA++V GVS+L + R+ ++ + R M+L M D R
Sbjct: 57 QLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE------------NFRKMILAMTRDIR 104
Query: 230 VVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
VVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RLG+ +K ELEDL F +
Sbjct: 105 VVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRLGIEHIKNELEDLSFQAMH 164
Query: 290 PQIFRKMR 297
P + ++
Sbjct: 165 PHRYEVLK 172
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 425 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 484
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 209 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 259
Query: 485 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 543
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 260 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 318
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1
Length = 757
Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 116/208 (55%), Gaps = 18/208 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA ++ + H GQ RK+G+PYL H + IL L K ++V G+LHD ++D
Sbjct: 41 IKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGILGEL-----KLDEASIVTGLLHDTIED 95
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+ + E FG EVA LV GV++LS + +L EE A + R M+
Sbjct: 96 TLATEEELTELFGSEVAHLVDGVTKLSKFSA-----------SASLSQEEKQAENFRKMI 144
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+L+KLADR HNMRT+ + K +AQETL I+ LA+RLG+ +K ELE
Sbjct: 145 IAMAQDIRVILVKLADRTHNMRTLDHMSEEKQARIAQETLDIYAPLANRLGISWIKTELE 204
Query: 282 DLCFAVLQPQIFRKMRADLASMWSPRNR 309
DL F ++PQ F ++A L R +
Sbjct: 205 DLSFRYVKPQEFFALQAKLNKRKKEREK 232
Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 9/125 (7%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G++ +S R K +YSI+ K++ + + +++D A R++ P CY L
Sbjct: 249 GLKGEVSGRFKHVYSIYKKIKSQGIDFDQIHDIIAFRII---------APTAPSCYEALG 299
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+VH +W P+ G F D+I PKP+ YQSLHT + GP +EVQIRT +MH+ AE G+AAH
Sbjct: 300 LVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSERVEVQIRTSEMHKIAEEGIAAH 359
Query: 537 WLYKE 541
W YKE
Sbjct: 360 WKYKE 364
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Shigella flexneri GN=spoT PE=3 SV=1
Length = 702
Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 17/196 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++++A A+ AH GQ R +G+PY+TH + ILA + K +T++A +LHDV+
Sbjct: 21 KRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEM-----KLDYETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E+ FG VA+LV GVS+L ++L R ++ +A + R M+
Sbjct: 76 EDTPATYQDMEQLFGKSVAELVEGVSKL---DKLKFRDKK---------EAQAENFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 MAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELE 183
Query: 282 DLCFAVLQPQIFRKMR 297
+L F L P +R ++
Sbjct: 184 ELGFEALYPNRYRVIK 199
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 537 WLYKETG 543
W YKE G
Sbjct: 339 WAYKEHG 345
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli
(strain K12) GN=spoT PE=1 SV=1
Length = 702
Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 17/196 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++++A A+ AH GQ R +G+PY+TH + ILA + K +T++A +LHDV+
Sbjct: 21 KRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEM-----KLDYETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E+ FG VA+LV GVS+L ++L R ++ +A + R M+
Sbjct: 76 EDTPATYQDMEQLFGKSVAELVEGVSKL---DKLKFRDKK---------EAQAENFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 MAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELE 183
Query: 282 DLCFAVLQPQIFRKMR 297
+L F L P +R ++
Sbjct: 184 ELGFEALYPNRYRVIK 199
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 537 WLYKETG 543
W YKE G
Sbjct: 339 WAYKEHG 345
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1
Length = 702
Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 17/196 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++++A A+ AH GQ R +G+PY+TH + ILA + K +T++A +LHDV+
Sbjct: 21 KRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEM-----KLDYETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E+ FG VA+LV GVS+L ++L R ++ +A + R M+
Sbjct: 76 EDTPATYQDMEQLFGKSVAELVEGVSKL---DKLKFRDKK---------EAQAENFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 MAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELE 183
Query: 282 DLCFAVLQPQIFRKMR 297
+L F L P +R ++
Sbjct: 184 ELGFEALYPNRYRVIK 199
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 537 WLYKETG 543
W YKE G
Sbjct: 339 WAYKEHG 345
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=relA PE=3 SV=2
Length = 760
Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 125/215 (58%), Gaps = 21/215 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + + +++A A+R H G RK+GDPY+TH + I A + + T+VA
Sbjct: 47 HPRADVQVLERAYDTAERLHDGVIRKSGDPYITHPLAVATIAAEIGMDT-----TTLVAA 101
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG+EVA+LV GV++L + LG EA
Sbjct: 102 LLHDTVEDTDYSLDDLTRDFGEEVARLVDGVTKLDKV---------------ALGAAAEA 146
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 147 ETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMA 206
Query: 275 ALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 309
++K ELEDL FA+L P+ + ++ +A R+R
Sbjct: 207 SVKWELEDLSFAILYPKKYEEIVRLVADRAPSRDR 241
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 425 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 484
R K +SI+ KM + ++D +R++V + N CY+ + +VH L+
Sbjct: 266 RPKHYWSIYQKMIVRGRDFDDIFDLVGIRILVDNVNN---------CYAAIGVVHSLFNA 316
Query: 485 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 542
+ G F DYI P+ YQSLHT V GP G LEVQ RT MH AE G+AAHW YKET
Sbjct: 317 LPGRFKDYISAPRFGVYQSLHTTVMGPGGKPLEVQARTHDMHYNAEFGIAAHWRYKET 374
Score = 33.9 bits (76), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 783 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 836
+ V P G+++ L ST D A V E G + +NG+LV T+LK GD VEV
Sbjct: 420 IFVFTPKGDVVNLPVNSTPVDFAYAVHTEVGHRCIGAKINGKLVALETKLKSGDRVEV 477
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA
PE=3 SV=3
Length = 734
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVV 161
V+KA +A+ AH Q+RK+G+PY+ H I IL L PS T+ G LHDVV
Sbjct: 28 VEKAYLYAEDAHREQYRKSGEPYIIHPIQVAGILVDLEMDPS-------TIAGGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L ++E F +EVA LV GV++L + + ++A + R M
Sbjct: 81 EDTDVTLDDLKEAFSEEVAMLVDGVTKLG------------KIKYKSQEEQQAENHRKMF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELE
Sbjct: 129 VAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHRLGISKIKWELE 188
Query: 282 DLCFAVLQPQIFRKM 296
D L PQ + ++
Sbjct: 189 DTALRYLNPQQYYRI 203
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 537 WLYKE 541
W YKE
Sbjct: 344 WAYKE 348
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 780 GEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVE 835
++V V P G+++ L SGS D + ++ E G + VNG++V + +L+ GDIVE
Sbjct: 391 SDMVYVFTPKGDVIELPSGSVPIDFSYRIHSEIGNKTIGAKVNGKMVTLDHKLRTGDIVE 450
Query: 836 V 836
+
Sbjct: 451 I 451
>sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Spiroplasma citri GN=spoT PE=3 SV=1
Length = 749
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 121/206 (58%), Gaps = 17/206 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++QKA +A+ HHGQ R +G Y+ H + T LA + T++AG+LHDV+
Sbjct: 25 KEIQKAYEYAEEKHHGQVRNSGARYIIHPLWTTFFLA-----QWRMGPKTLIAGLLHDVL 79
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++E FG E+A LV GV+++SY + R + +A LR +
Sbjct: 80 EDTPATFEELQELFGIEIANLVEGVTKVSY----FAKENRTQI--------KAQYLRKLY 127
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHN++TI L P + + +A+E+L I+ ++A RLG+ A+K E+E
Sbjct: 128 LSMAKDIRVIIVKLADRLHNLKTIGYLKPERQQIIARESLEIYSAIAHRLGMKAVKQEIE 187
Query: 282 DLCFAVLQPQIFRKMRADLASMWSPR 307
D+ F ++ P + K+ + L S R
Sbjct: 188 DISFKIINPVQYNKIVSLLESSNKER 213
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 418 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 477
M V + R KS+YSI+ KM + ++D A+R++ ++ CY +L
Sbjct: 234 MSVKVYGRSKSIYSIYRKMNQFGKNFDDIHDILAVRIITN---------SVDDCYKVLGF 284
Query: 478 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 537
VH+ + P++ F DYI PK + YQSLHT + DG EVQIRT++M E AE G+AAHW
Sbjct: 285 VHQHYTPLNNRFKDYIATPKHNLYQSLHTTIVADDGLIFEVQIRTEEMDELAEQGVAAHW 344
Query: 538 LYKETGN 544
YKE N
Sbjct: 345 RYKEGEN 351
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 782 VVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEVR 837
++ V PNG+++ L GST D A K+ E G+ + +NG +T LK GD+V+++
Sbjct: 408 LIYVLTPNGKVVTLPFGSTVLDFAYKIHSEIGEKTIGAKINGLFSPISTVLKSGDVVDIK 467
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1
Length = 847
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 112/191 (58%), Gaps = 19/191 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+++A A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 126 QIERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 180
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L + +FGD V LV GV++L ++ + +A +R M++
Sbjct: 181 DTEYGLEDLRRDFGDVVTLLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 226
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 227 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 286
Query: 283 LCFAVLQPQIF 293
L FA+L P+++
Sbjct: 287 LAFAILYPKMY 297
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 418 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 477
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 331 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 381
Query: 478 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 537
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 382 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHW 441
Query: 538 LYKETGNKLQSISSMDESDIEASSSLSKDTDDH 570
YK+ ++++ + +A S K DDH
Sbjct: 442 KYKQ-----EAVAGASKVRTDAPKSSGKSKDDH 469
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 19/156 (12%)
Query: 688 PTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASIN---NKVRL 744
P +QI +EY ++ + V R+ AP S S + N +
Sbjct: 419 PVELQIRTFDMHRRAEYGIAAHWKYKQEAVAGASKVRTD---APKSSGKSKDDHLNDMAW 475
Query: 745 LRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADA 804
LR +L W+++ +S + V V P G+++ L +G+T D
Sbjct: 476 LRQLLDWQKETEDPGEFLESLRFDLSRNE---------VFVFTPKGDVIALPAGATPVDF 526
Query: 805 AMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 836
A V E G + VNG+LV + L +GD+VEV
Sbjct: 527 AYAVHTEVGHRTIGARVNGRLVPLESTLDNGDLVEV 562
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3
SV=1
Length = 841
Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 111/191 (58%), Gaps = 19/191 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD +
Sbjct: 123 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDSRE 177
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L + +FGD V LV GV++L ++ + +A +R M++
Sbjct: 178 DTEYGLDDLRRDFGDVVGLLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 223
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 224 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 283
Query: 283 LCFAVLQPQIF 293
L FA+L P+++
Sbjct: 284 LAFAILYPKMY 294
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 418 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 477
++ T++ R K YS++ K+ + ++YD +RV+V ++ CY+ L
Sbjct: 328 IKATVTGRPKHYYSVYQKIIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 378
Query: 478 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 537
VH W P+ G F DYI PK + YQSLHT V GP+G +E+QIRT MH AE+G+AAHW
Sbjct: 379 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHW 438
Query: 538 LYKE 541
YK+
Sbjct: 439 KYKQ 442
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 688 PTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRT 747
P +QI +EY ++ + V + S+ +D P + N + LR
Sbjct: 416 PVELQIRTFDMHRRAEYGIAAHWKYKQEAV-ARASKVRTDVPKPAKGKDDHLNDMAWLRQ 474
Query: 748 MLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMK 807
+L W+++ +S + V V P +++ L +G+T D A
Sbjct: 475 LLDWQKETEDPGEFLESLRFDLSRNE---------VFVFTPKSDVIALPAGATPVDFAYA 525
Query: 808 VGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 836
V E G + VNG+LV + L +GD+VEV
Sbjct: 526 VHTEVGHRTIGARVNGRLVPLESTLDNGDLVEV 558
>sp|Q9KNM2|SPOT_VIBCH Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=spoT PE=1 SV=1
Length = 705
Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 118/196 (60%), Gaps = 17/196 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDLETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++ FG VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLDAHFGSSVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR NMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTPNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVLQPQIFRKMR 297
+L F L P +R ++
Sbjct: 184 ELGFEALYPNRYRVLK 199
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G+ + R K+L+SI++KM+ K+ H + D A R+VV + CY +L
Sbjct: 228 GLPARVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRIVVDTAD---------TCYRVLG 278
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
VH L+ P DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPARMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 537 WLYKETGNK 545
W YK +
Sbjct: 339 WSYKANSER 347
>sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus
dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1
Length = 739
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA+ +A AH Q RK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-----TVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L +IE +FG +V +V GV++L + HEE A + R ML
Sbjct: 83 TDITLDNIEFDFGKDVRDIVDGVTKLGKVE--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+L+KLADRLHNMRT+ L K +++ET+ I+ LA RLG+ +K ELE
Sbjct: 129 MAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVLQPQIFRKM 296
DL F L F K+
Sbjct: 189 DLAFRYLNETEFYKI 203
Score = 109 bits (273), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 16/154 (10%)
Query: 394 SLVACEEALEKELLIS------TSYGYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVY 447
S + E+ E+E L+ SY G+ + R K +YSI+ KMR K +++
Sbjct: 204 SHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVYGRPKHIYSIYRKMRDKKKRFDQIF 263
Query: 448 DARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 507
D A+R V+ ++ Y+++ +H LW P+ G F DYI PK +GYQS+HT
Sbjct: 264 DLIAIRCVMETQSD---------VYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTT 314
Query: 508 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 541
V GP G +E+QIRT++MH+ AE+G+AAHW YK+
Sbjct: 315 VYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKK 347
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252)
GN=relA PE=3 SV=1
Length = 736
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++E F +EVA++V GV++L V + ++A + R +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKEEQQAENHRKLF 135
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELE
Sbjct: 136 IAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELE 195
Query: 282 DLCFAVLQP-QIFR 294
D + Q FR
Sbjct: 196 DTALRYIDNVQYFR 209
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 537 WLYKE----------TGNKLQSISSMDESDIEASSS 562
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA
PE=3 SV=1
Length = 736
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++E F +EVA++V GV++L V + ++A + R +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKEEQQAENHRKLF 135
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELE
Sbjct: 136 IAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELE 195
Query: 282 DLCFAVLQP-QIFR 294
D + Q FR
Sbjct: 196 DTALRYIDNVQYFR 209
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 537 WLYKE----------TGNKLQSISSMDESDIEASSS 562
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1
Length = 736
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++E F +EVA++V GV++L V + ++A + R +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKEEQQAENHRKLF 135
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELE
Sbjct: 136 IAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELE 195
Query: 282 DLCFAVLQP-QIFR 294
D + Q FR
Sbjct: 196 DTALRYIDNVQYFR 209
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 537 WLYKE----------TGNKLQSISSMDESDIEASSS 562
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476)
GN=relA PE=3 SV=1
Length = 736
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++E F +EVA++V GV++L V + ++A + R +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKEEQQAENHRKLF 135
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELE
Sbjct: 136 IAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELE 195
Query: 282 DLCFAVLQP-QIFR 294
D + Q FR
Sbjct: 196 DTALRYIDNVQYFR 209
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 537 WLYKE----------TGNKLQSISSMDESDIEASSS 562
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315)
GN=relA PE=1 SV=2
Length = 736
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++E F +EVA++V GV++L V + ++A + R +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKEEQQAENHRKLF 135
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELE
Sbjct: 136 IAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELE 195
Query: 282 DLCFAVLQP-QIFR 294
D + Q FR
Sbjct: 196 DTALRYIDNVQYFR 209
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 537 WLYKE----------TGNKLQSISSMDESDIEASSS 562
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=relA PE=3 SV=1
Length = 729
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 26 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +++ F +E+A++V GV++L V + ++A + R +
Sbjct: 81 EDTSYTFEDVKDMFNEEIARIVDGVTKLK------------KVKYRSKEEQQAENHRKLF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELE
Sbjct: 129 IAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELE 188
Query: 282 DLCFAVLQP-QIFR 294
D + Q FR
Sbjct: 189 DTALRYIDSVQYFR 202
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 19/145 (13%)
Query: 422 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 481
++ R K +YSI+ KM ++ +++D A+R++V +I CY+ L +VH L
Sbjct: 238 INGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVN---------SINDCYATLGLVHTL 288
Query: 482 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 541
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKE 348
Query: 542 TG----------NKLQSISSMDESD 556
NKL + + E+D
Sbjct: 349 GKTVNQKTQDFQNKLNWLKELAETD 373
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=relA PE=3 SV=1
Length = 729
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 26 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +++ F +E+A++V GV++L V + ++A + R +
Sbjct: 81 EDTSYTFEDVKDMFNEEIARIVDGVTKLK------------KVKYRSKEEQQAENHRKLF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA RLG+ +K ELE
Sbjct: 129 IAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELE 188
Query: 282 DLCFAVLQP-QIFR 294
D + Q FR
Sbjct: 189 DTALRYIDSVQYFR 202
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 19/145 (13%)
Query: 422 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 481
++ R K +YSI+ KM ++ +++D A+R++V +I CY+ L +VH L
Sbjct: 238 INGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVN---------SINDCYATLGLVHTL 288
Query: 482 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 541
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKE 348
Query: 542 TG----------NKLQSISSMDESD 556
NKL + + E+D
Sbjct: 349 GKTVNQKTQDFQNKLNWLKELAETD 373
>sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=spoT PE=3 SV=1
Length = 667
Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 17/219 (7%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
F + + KA+ A++ H+GQ+R++G+PY+ H I LA + +AG+LH
Sbjct: 35 FERKSIFKALEIAEQLHYGQYRESGEPYIIHPIMVSLFLAKF-----QLDFKATIAGLLH 89
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DV++D I +EF +E+ L+ GV++ I+ L + R I +EAN +
Sbjct: 90 DVLEDTNVEKEEIVKEFDEEILSLIDGVTK---IHDLHNKTRSI---------KEANTIS 137
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
M M D R+++IKLAD+LHNM T+ LP + +A++ L + +A RLG+ +LK
Sbjct: 138 KMFFAMTHDIRIIIIKLADKLHNMTTLSYLPKNRQDRIAKDCLSTYVPIAERLGISSLKT 197
Query: 279 ELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRIT 317
LEDL F L P+ +++++ L+ R + Y +++
Sbjct: 198 YLEDLSFKHLYPKDYKEIKNFLSETKIEREKKLYKGKLS 236
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 86/142 (60%), Gaps = 17/142 (11%)
Query: 401 ALEKELLISTSYGYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 460
++EKEL S G+E ++ R K YSIF KM+ + + +++D +R++ +
Sbjct: 236 SIEKELQKS-------GIEAEITVRSKHFYSIFRKMQTRTNKLTQIFDTLGIRIICKKQ- 287
Query: 461 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-DGSALEVQ 519
+ CY +L+IVHR+W PI G DYI +PK + YQSLHT V+ P D +E+Q
Sbjct: 288 --------KECYEILEIVHRVWKPIPGRLKDYIASPKENKYQSLHTTVRIPEDNQLIEIQ 339
Query: 520 IRTQKMHEYAEHGLAAHWLYKE 541
IRT++M A +G+AAHW+YKE
Sbjct: 340 IRTEEMDRIANYGVAAHWIYKE 361
>sp|P0AG23|RELA_SHIFL GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1
Length = 744
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 15/149 (10%)
Query: 399 EEALEKELLISTSYGYI------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 452
E L++E I G++ G++ + R K +YSI+ KM++K++ +++D RA+
Sbjct: 220 ERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAV 279
Query: 453 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 512
R+V +Q CY+ L IVH + + EFDDY+ NPKP+GYQS+HT V GP
Sbjct: 280 RIV---------AERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPG 330
Query: 513 GSALEVQIRTQKMHEYAEHGLAAHWLYKE 541
G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 331 GKTVEIQIRTKQMHEDAELGVAAHWKYKE 359
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATH------TDS 126
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ E+ +++R MLL MVDD R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 VSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLA 186
Query: 269 SRLGLWALKAELEDLCFAVLQPQIFRKM 296
+RLG+ LK ELED CF L P ++++
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG20|RELA_ECOLI GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=1
SV=1
Length = 744
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 15/149 (10%)
Query: 399 EEALEKELLISTSYGYI------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 452
E L++E I G++ G++ + R K +YSI+ KM++K++ +++D RA+
Sbjct: 220 ERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAV 279
Query: 453 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 512
R+V +Q CY+ L IVH + + EFDDY+ NPKP+GYQS+HT V GP
Sbjct: 280 RIV---------AERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPG 330
Query: 513 GSALEVQIRTQKMHEYAEHGLAAHWLYKE 541
G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 331 GKTVEIQIRTKQMHEDAELGVAAHWKYKE 359
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATH------TDS 126
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ E+ +++R MLL MVDD R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 VSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLA 186
Query: 269 SRLGLWALKAELEDLCFAVLQPQIFRKM 296
+RLG+ LK ELED CF L P ++++
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG21|RELA_ECOL6 GTP pyrophosphokinase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=relA PE=3 SV=1
Length = 744
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 15/149 (10%)
Query: 399 EEALEKELLISTSYGYI------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 452
E L++E I G++ G++ + R K +YSI+ KM++K++ +++D RA+
Sbjct: 220 ERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAV 279
Query: 453 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 512
R+V +Q CY+ L IVH + + EFDDY+ NPKP+GYQS+HT V GP
Sbjct: 280 RIV---------AERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPG 330
Query: 513 GSALEVQIRTQKMHEYAEHGLAAHWLYKE 541
G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 331 GKTVEIQIRTKQMHEDAELGVAAHWKYKE 359
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATH------TDS 126
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ E+ +++R MLL MVDD R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 VSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLA 186
Query: 269 SRLGLWALKAELEDLCFAVLQPQIFRKM 296
+RLG+ LK ELED CF L P ++++
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG22|RELA_ECO57 GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1
Length = 744
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 15/149 (10%)
Query: 399 EEALEKELLISTSYGYI------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 452
E L++E I G++ G++ + R K +YSI+ KM++K++ +++D RA+
Sbjct: 220 ERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAV 279
Query: 453 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 512
R+V +Q CY+ L IVH + + EFDDY+ NPKP+GYQS+HT V GP
Sbjct: 280 RIV---------AERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPG 330
Query: 513 GSALEVQIRTQKMHEYAEHGLAAHWLYKE 541
G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 331 GKTVEIQIRTKQMHEDAELGVAAHWKYKE 359
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATH------TDS 126
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ E+ +++R MLL MVDD R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 VSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLA 186
Query: 269 SRLGLWALKAELEDLCFAVLQPQIFRKM 296
+RLG+ LK ELED CF L P ++++
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=relA PE=3 SV=2
Length = 736
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 18/194 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V K+ A AH GQFRK G PY+ H I IL + + T+VAG LHDV+
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEM-----RLDGPTIVAGFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++E F +EVA++V GV++L V + ++A + R +
Sbjct: 88 EDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKEEQQAENHRKLF 135
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA LG+ +K ELE
Sbjct: 136 IAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHHLGINTIKWELE 195
Query: 282 DLCFAVLQP-QIFR 294
D + Q FR
Sbjct: 196 DTALRYIDNVQYFR 209
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 537 WLYKE----------TGNKLQSISSMDESDIEASSS 562
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rsh PE=1 SV=2
Length = 750
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 19/225 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHRSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ +A +
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA------------VQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R+G+ +
Sbjct: 119 LRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDM 178
Query: 277 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 321
+ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 179 REELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMESKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 537 WLYKETG--NKLQSISS 551
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|P55133|RELA_PHOAS GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG
15956) GN=relA PE=3 SV=1
Length = 744
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 87/133 (65%), Gaps = 9/133 (6%)
Query: 422 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 481
+ R K +YSI+ KM++K + +++D RA+R+V + +Q CY+ L +VH
Sbjct: 248 VQGRPKHIYSIWRKMQKKSLEFDELFDVRAVRIVAEE---------LQDCYAALGVVHTK 298
Query: 482 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 541
+ + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE +E G+AAHW YKE
Sbjct: 299 YRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGVAAHWKYKE 358
Query: 542 TGNKLQSISSMDE 554
+ S+ DE
Sbjct: 359 GTASGGAQSAYDE 371
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
DT++A +L+ +V+ C S +++EE+ + LV GV ++ I+QL + + T
Sbjct: 73 DTLIAALLYPLVEGGCYSTDALKEEYSGTILHLVQGVEQMCAISQLK------STAEETA 126
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ +++R MLL MVDD R V+IKLA+R+ N+R + P RA AQE I+ LA+
Sbjct: 127 QAAQVDNIRRMLLSMVDDFRCVVIKLAERICNLREVKDQPDEVRRAAAQECANIYAPLAN 186
Query: 270 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 301
RLG+ LK E+ED F P ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQHPDTYKQIAKQLS 218
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus biovar 1 (strain
9-941) GN=rsh PE=1 SV=1
Length = 750
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 19/225 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ +A +
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA------------VQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R+G+ +
Sbjct: 119 LRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDM 178
Query: 277 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 321
+ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 179 REELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 537 WLYKETG--NKLQSISS 551
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh
PE=3 SV=1
Length = 750
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 19/225 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ +A +
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA------------VQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R+G+ +
Sbjct: 119 LRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDM 178
Query: 277 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 321
+ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 179 REELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 537 WLYKETG--NKLQSISS 551
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rsh PE=3 SV=1
Length = 750
Score = 123 bits (308), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 19/225 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ +A +
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA------------VQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R+G+ +
Sbjct: 119 LRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDM 178
Query: 277 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 321
+ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 179 REELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 537 WLYKETG--NKLQSISSMDESDIEASSSLSKDTDDHNP 572
+YK+ G N IS+ + ++ + ++ NP
Sbjct: 339 SIYKDRGSANNPHKISTETNAYAWLRQTIEQLSEGDNP 376
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis biovar 1 (strain 1330)
GN=rsh PE=1 SV=1
Length = 750
Score = 122 bits (307), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 19/225 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ + KA +A + H Q R +GDPY +H + IL + T+ +
Sbjct: 16 PDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEA-----TIAIAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD ++D + I++ FG E+ KLV G+++L ++ + ++ +A +
Sbjct: 71 LHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA------------VQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R+G+ +
Sbjct: 119 LRKLLLAISEDVRVLLVKLADRLHNMRTLGVMCEDKRLRIAEETMDIYAPLAGRMGMQDM 178
Query: 277 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 321
+ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 179 REELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 537 WLYKETG--NKLQSISSMDESDIEASSSLSKDTDDHNP 572
+YK+ G N IS+ + ++ + ++ NP
Sbjct: 339 SIYKDRGSANNPHKISTETNAYAWLRQTIEQLSEGDNP 376
>sp|P44644|RELA_HAEIN GTP pyrophosphokinase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=relA PE=3 SV=1
Length = 743
Score = 122 bits (307), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 11/136 (8%)
Query: 419 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 478
+V + R K +YSI+ KM++K + +YD RA+R++V +Q CY+ L IV
Sbjct: 248 QVEVYGRPKHIYSIWRKMQKKHLEFSGLYDVRAVRIIV---------QKLQDCYTALGIV 298
Query: 479 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 538
H + + EFDDY+ NPKP+GYQS+HT V G G +EVQIRTQ+MH+ AE G+AAHW
Sbjct: 299 HTQFKHLPKEFDDYVANPKPNGYQSIHTVVLGKGGKPIEVQIRTQQMHDDAELGMAAHWK 358
Query: 539 YKETGNKLQSISSMDE 554
YKE GN S+S+ +E
Sbjct: 359 YKE-GNT-GSMSAYEE 372
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 9/148 (6%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T++ +L +V + S++E+FG ++ KL+ GV + I QL H +
Sbjct: 77 ETLLTAMLFPIVANKLTDWESLKEKFGAKITKLLKGVLEMDNIRQLNASH--------SA 128
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVA-QETLLIWCSLA 268
+ +++R MLL MVDD R V+IKLA+R+ +R + + +A +E I+ LA
Sbjct: 129 NALQVDNVRRMLLAMVDDFRCVIIKLAERITFLRDAEHRCAEEDKVLAVKECSYIYAPLA 188
Query: 269 SRLGLWALKAELEDLCFAVLQPQIFRKM 296
+RLG+ LK ELED CF L P+ +R +
Sbjct: 189 NRLGIGQLKWELEDYCFRYLHPEQYRAI 216
>sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=spoT PE=3 SV=1
Length = 733
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 109/193 (56%), Gaps = 17/193 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTG-RILAMLIPSSGKRAVDTVVAGILHDVVD 162
+ KA+ ++K+ H Q R +G+P+ H + T R++ + S +TV AG+LHD+++
Sbjct: 40 ITKALDYSKKWHGEQKRLSGEPFFIHPLRTALRLVEWNMDS------NTVCAGLLHDIIE 93
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + + FG E+ LV V++++ + ++ R++N + E+ N ++ +
Sbjct: 94 DTQVTEADLTAIFGKEITDLVVKVTKITSES---KKQRQLNRKK-----EDLNLKSLVNI 145
Query: 223 GMVDDPRV--VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
M V +++KLADRL N+ +I L K + +A+ETL ++ +A R+G++ +K +L
Sbjct: 146 AMSSQQEVNALVLKLADRLDNISSIEFLAVEKQKIIAKETLELYAKIAGRIGMYPVKTQL 205
Query: 281 EDLCFAVLQPQIF 293
DL F VL P+ F
Sbjct: 206 ADLSFKVLDPKNF 218
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 10/124 (8%)
Query: 418 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 477
+E L SR+K +YS + K+ + I K++D A+R++V + CY LL +
Sbjct: 252 IEYRLESRIKGIYSTYQKLTFHEQNIAKIHDLFAIRLIVKSELD---------CYHLLGL 302
Query: 478 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 537
+H + + F DYI +PK + YQS+HT V+ G +E+QIRTQ+M +++G A+HW
Sbjct: 303 IHLNFTVLMKHFKDYIASPKQNFYQSIHTTVR-LKGLNVEIQIRTQRMDHVSKYGFASHW 361
Query: 538 LYKE 541
+YKE
Sbjct: 362 IYKE 365
>sp|P47520|SPOT_MYCGE Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=spoT PE=3 SV=1
Length = 720
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 106/191 (55%), Gaps = 19/191 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E + KA AK H Q R +G+P+ H + T L + +D T+ AG+LHD
Sbjct: 25 ELINKAFYHAKTWHENQKRLSGEPFFIHPLRTALSLV-------EWNMDPITICAGLLHD 77
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR--RHRRINVNQGTLGHEEANDL 217
+++D ++ +I F E+A+LV V++++ ++ R ++++ N+N + + N
Sbjct: 78 IIEDTDQTEANIAMIFSKEIAELVTKVTKITNESKKQRHLKNKKENLNLKSFVNIAINSQ 137
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
+ + V+++KLADRL N+ +I LP K + +A+ETL ++ +A R+G++ +K
Sbjct: 138 Q--------EINVMVLKLADRLDNIASIEFLPIEKQKVIAKETLELYAKIAGRIGMYPVK 189
Query: 278 AELEDLCFAVL 288
+L DL F VL
Sbjct: 190 TKLADLSFKVL 200
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 10/124 (8%)
Query: 418 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 477
+E L SR+K +YS + K+ + I K++D A+R++ + CY +L +
Sbjct: 239 IEYQLESRIKGIYSTYKKLTVHEQNISKIHDLFAIRLITKSELD---------CYHILGL 289
Query: 478 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 537
+H ++ F DYI +PK + YQS+HT V+ G +E+QIRTQ+M ++ GLA+HW
Sbjct: 290 IHLNFLIDSKYFKDYIASPKQNLYQSIHTTVR-LKGLNVEIQIRTQQMDNVSKFGLASHW 348
Query: 538 LYKE 541
+YKE
Sbjct: 349 IYKE 352
>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1
Length = 1179
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 417 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 476
++ +LS R+KS YSI+ K KD+ I + D A R +V +K + CY +
Sbjct: 209 NIKASLSYRIKSPYSIWIKTLVKDIHITALNDILAFRAIVPNK---------KACYDVSK 259
Query: 477 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 536
++H + I +F DYI PK +GYQS+H + G + +E+QIR+ MH ++G +AH
Sbjct: 260 LIHLHYNTITSQFVDYIRYPKNNGYQSIHLVISGGNKGNIELQIRSTTMHRQTQYG-SAH 318
Query: 537 WLYK 540
YK
Sbjct: 319 HTYK 322
>sp|Q8N4P3|MESH1_HUMAN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Homo sapiens GN=HDDC3 PE=1 SV=3
Length = 179
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 103 QVQKAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160
Q+ +A FA R H Q RK G PY+ H I RIL +G + + A +LHD
Sbjct: 7 QLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTH---EAGITDIVVLQAALLHDT 63
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
V+D +L +E FG +V +LV V+ + +L R +R+ V Q
Sbjct: 64 VEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLER--KRLQVEQAPHS---------- 111
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPP 250
P L+KLAD+L+N+R + P
Sbjct: 112 ------SPGAKLVKLADKLYNLRDLNRCTP 135
>sp|Q9D114|MESH1_MOUSE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Mus musculus GN=Hddc3 PE=2 SV=1
Length = 179
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 23/150 (15%)
Query: 103 QVQKAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160
Q+ +A FA H Q RK G PY+ H I RIL +G + + A +LHD
Sbjct: 7 QLLEAADFAAHKHRQQRRKDPEGTPYINHPIGVARILTH---EAGITDIVVLQAALLHDT 63
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
V+D +L +E FG +V +LV V+ + +L R+ +++ E+A
Sbjct: 64 VEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQV---------EQAPH---- 110
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPP 250
P L+KLAD+L+N+R + P
Sbjct: 111 -----SSPGAKLVKLADKLYNLRDLNRCTP 135
>sp|Q568P1|MESH1_DANRE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Danio rerio GN=hddc3 PE=2 SV=1
Length = 180
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 106 KAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ + FA H Q K G PY+ H I RIL+ V+ + A +LHD V+D
Sbjct: 11 ETVNFAAEKHRNQRHKDPEGTPYINHPIGVARILSH---EGEITDVEVIQAALLHDTVED 67
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +E FG VA++V GV+ + + R +++ + H+
Sbjct: 68 TDTTFEELESVFGATVARIVQGVTDDKSLPKAERERQQVE-HAPHCSHQ----------- 115
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
L+KLAD+L+N+R + P A + W S + GL A +E+
Sbjct: 116 ------AKLVKLADKLYNLRDLNRCTPEGWSAQRVQEYFEWASQVVK-GLRGTNAAIEE 167
>sp|P29941|YCB8_PSEDE Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas
denitrificans PE=4 SV=1
Length = 175
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 107 AIAFAKRAHHGQFRK-TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
A+ FA RAH Q RK G PY+ H I I+ S + + A +LHD V+D
Sbjct: 17 ALQFATRAHGEQKRKYDGRPYIVHPIAVAEIV-----RSVPHTPEMIAAALLHDTVEDTD 71
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLS 190
+L I+E FG +VA LVA ++ +S
Sbjct: 72 ATLLEIKEAFGPKVATLVAWLTDIS 96
>sp|Q9VAM9|MESH1_DROME Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Drosophila melanogaster GN=Mesh1 PE=1 SV=1
Length = 179
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 106 KAIAFAKRAHHGQFRKTGD--PYLTHCIHTGRILAM--LIPSSGKRAVDTVVAGILHDVV 161
+ + +A H Q RK PY+ H I+ IL++ I G ++A +LHDVV
Sbjct: 11 ECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEG-----VLMAALLHDVV 65
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLGHEEANDLRVM 220
+D S +E+ FG +V LV V+ + + R+ +I N + +
Sbjct: 66 EDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSC----------- 114
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 264
R LIKLAD+L N+R + P ++ +W
Sbjct: 115 --------RAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVW 150
>sp|Q28C98|MESH1_XENTR Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1
Length = 179
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
Query: 106 KAIAFAKRAHHGQFRKTGD--PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+A FA H Q RK + PY+ H + RIL+ G + A +LHD V+D
Sbjct: 10 EAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSH---EGGITDTAVLQAALLHDTVED 66
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ IE FG +V +V V+ + ++ R +R+ + ++A
Sbjct: 67 TNTTFEEIELHFGQDVRNIVEEVTDDKTLPKMER--KRLQMEHAPHCSQKAK-------- 116
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPP 250
L+KLAD+L+N+R + P
Sbjct: 117 --------LVKLADKLYNLRDLKRCTP 135
>sp|O31611|YJBM_BACSU GTP pyrophosphokinase YjbM OS=Bacillus subtilis (strain 168)
GN=yjbM PE=1 SV=1
Length = 211
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 422 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 481
++ R+K + SI K RRK + +H++ ++ + G + IQ +L +
Sbjct: 43 VTGRVKPVASILEKARRKSIPLHEI---ETMQDIAGLRIMCQFVDDIQIVKEML-FARKD 98
Query: 482 WIPIDGEFDDYIVNPKPSGYQSLH-------TAVQGPDGSALEVQIRTQKMHEYA--EHG 532
+ +D DYI K SGY+S H V G +E+QIRT M+ +A EH
Sbjct: 99 FTVVDQR--DYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHS 156
Query: 533 LAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDD 569
L YK +GN + + + EA+S L ++ +
Sbjct: 157 LN----YKYSGNIPEKVKLRLQRASEAASRLDEEMSE 189
>sp|P39583|YWAC_BACSU GTP pyrophosphokinase YwaC OS=Bacillus subtilis (strain 168)
GN=ywaC PE=1 SV=1
Length = 210
Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 29/151 (19%)
Query: 400 EALEKEL-LISTSYGYIPG---MEVTLSSRLKSLYSIFSKMRRKDVGI------HKVYDA 449
+AL+ + +IS Y I G +E T SR+KS SI +K+ RK I ++D
Sbjct: 30 DALDTKFSIISQEYNLIHGHNPIEHT-KSRVKSFESIVNKLMRKGCEITTKEMKEHIHDI 88
Query: 450 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 509
+R++ I Y++++++ + + DYI PKP+GY+SLH ++
Sbjct: 89 AGVRIICS---------FISDIYNVVNVLKQHEDLRIVKVKDYIQTPKPNGYRSLHLIIE 139
Query: 510 GP-------DGSALEVQIRTQKMHEYA--EH 531
P + E+QIRT M +A EH
Sbjct: 140 MPVNLTNRVEYVKAEIQIRTIAMDFWASLEH 170
>sp|B6J5F6|RS4_COXB1 30S ribosomal protein S4 OS=Coxiella burnetii (strain CbuK_Q154)
GN=rpsD PE=3 SV=1
Length = 206
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 796 RSGSTAADAAMKVGLEGKLVLVNGQLV-LPNTELKDGDIVEVR 837
R G +A A + + K +LVNG++V +P+ ++K GDI+EVR
Sbjct: 104 RMGFSATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVR 146
>sp|B0V2N1|PTPRS_MOUSE Receptor-type tyrosine-protein phosphatase S OS=Mus musculus
GN=Ptprs PE=1 SV=1
Length = 1907
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 666 LEKYTLCRDGMYH-KQDQFGRLLPTFIQITHLTEEEESEYW-AVVSAVFEGKPVDSVVSR 723
+E + +DG Y K+D + T I L+ E E W + V+++ +G P +SVV+R
Sbjct: 352 IEYKSKSQDGPYQIKED----ITTTRYSIGGLSPNSEYEIWVSAVNSIGQGPPSESVVTR 407
Query: 724 RSSDSVAPTSMEASINNKVRLLRTML-RWEEQLRSEASLR 762
AP S ++ ++ TM+ +WEE + +R
Sbjct: 408 TGEQ--APASAPRNVQARMLSATTMIVQWEEPVEPNGLIR 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,613,696
Number of Sequences: 539616
Number of extensions: 12740100
Number of successful extensions: 35144
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 34889
Number of HSP's gapped (non-prelim): 148
length of query: 838
length of database: 191,569,459
effective HSP length: 126
effective length of query: 712
effective length of database: 123,577,843
effective search space: 87987424216
effective search space used: 87987424216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)