Query 003224
Match_columns 838
No_of_seqs 507 out of 2441
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 19:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 1E-129 2E-134 1127.3 34.6 464 94-688 17-500 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 4E-124 9E-129 1094.8 31.7 464 94-685 25-518 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 4E-122 9E-127 1080.0 37.7 455 100-686 19-497 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 5E-115 1E-119 1021.6 35.4 447 107-685 1-470 (683)
5 KOG1157 Predicted guanosine po 100.0 3.1E-74 6.8E-79 617.9 23.7 328 98-545 71-400 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 8.6E-39 1.9E-43 312.9 3.7 153 107-274 1-153 (153)
7 PF04607 RelA_SpoT: Region fou 99.9 4.8E-28 1E-32 225.2 7.9 108 424-542 1-114 (115)
8 cd05399 NT_Rel-Spo_like Nucleo 99.9 6.2E-27 1.4E-31 222.6 12.7 104 419-531 20-129 (129)
9 COG0317 SpoT Guanosine polypho 99.9 3.3E-27 7.2E-32 275.2 8.5 91 739-838 354-448 (701)
10 COG2357 PpGpp synthetase catal 99.9 1E-25 2.2E-30 232.3 10.2 121 413-546 48-181 (231)
11 PRK11092 bifunctional (p)ppGpp 99.9 5.4E-26 1.2E-30 268.7 8.6 91 739-838 353-447 (702)
12 PRK10872 relA (p)ppGpp synthet 99.9 3.4E-24 7.3E-29 253.4 7.8 92 738-838 370-465 (743)
13 TIGR00691 spoT_relA (p)ppGpp s 99.9 1.1E-22 2.3E-27 241.1 8.5 91 739-838 327-421 (683)
14 PF02824 TGS: TGS domain; Int 99.5 1.6E-14 3.6E-19 121.6 4.3 56 783-838 1-60 (60)
15 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 1.1E-09 2.4E-14 96.7 4.5 48 790-838 22-76 (76)
16 cd01666 TGS_DRG_C TGS_DRG_C: 98.8 6.6E-09 1.4E-13 91.7 5.3 49 790-838 16-75 (75)
17 cd01668 TGS_RelA_SpoT TGS_RelA 98.7 2.9E-08 6.3E-13 81.8 7.1 56 783-838 1-60 (60)
18 PF02824 TGS: TGS domain; Int 98.3 2E-07 4.4E-12 78.7 1.2 49 576-631 2-60 (60)
19 cd01616 TGS The TGS domain, na 98.1 6.5E-06 1.4E-10 66.0 6.9 54 785-838 3-60 (60)
20 PRK01777 hypothetical protein; 98.0 1.7E-05 3.7E-10 73.2 7.1 56 781-837 7-74 (95)
21 cd04938 TGS_Obg-like TGS_Obg-l 98.0 1.6E-05 3.4E-10 70.5 6.5 48 791-838 24-76 (76)
22 PRK09602 translation-associate 98.0 6.1E-06 1.3E-10 93.6 4.4 46 792-838 342-394 (396)
23 TIGR03276 Phn-HD phosphonate d 97.8 4.8E-05 1E-09 77.6 7.8 71 115-190 13-102 (179)
24 PRK05659 sulfur carrier protei 97.8 4.2E-05 9.2E-10 65.2 6.3 53 786-838 3-61 (66)
25 PRK06437 hypothetical protein; 97.6 0.00016 3.4E-09 62.6 6.1 52 787-838 6-62 (67)
26 cd01667 TGS_ThrRS_N TGS _ThrRS 97.6 0.0002 4.4E-09 57.7 6.4 54 785-838 3-60 (61)
27 PRK06944 sulfur carrier protei 97.6 0.00019 4E-09 61.0 6.3 52 787-838 4-60 (65)
28 cd00565 ThiS ThiaminS ubiquiti 97.5 0.00017 3.6E-09 61.6 5.5 51 788-838 4-60 (65)
29 PRK07440 hypothetical protein; 97.5 0.00022 4.7E-09 62.3 6.1 54 785-838 6-65 (70)
30 COG2104 ThiS Sulfur transfer p 97.4 0.00029 6.2E-09 61.5 5.8 50 789-838 8-63 (68)
31 PRK07696 sulfur carrier protei 97.4 0.00031 6.7E-09 60.7 5.5 52 787-838 4-62 (67)
32 PRK08364 sulfur carrier protei 97.4 0.00042 9.1E-09 60.3 6.3 47 792-838 17-65 (70)
33 TIGR01683 thiS thiamine biosyn 97.3 0.00058 1.3E-08 58.2 6.1 50 789-838 4-59 (64)
34 PRK08053 sulfur carrier protei 97.2 0.001 2.2E-08 57.2 6.2 52 787-838 4-61 (66)
35 cd01669 TGS_Ygr210_C TGS_Ygr21 97.0 0.00034 7.4E-09 62.2 2.3 43 584-631 27-76 (76)
36 PF03658 Ub-RnfH: RnfH family 96.9 0.00082 1.8E-08 60.9 3.5 55 782-837 5-71 (84)
37 PF14451 Ub-Mut7C: Mut7-C ubiq 96.9 0.0019 4.2E-08 58.2 5.7 46 792-837 26-74 (81)
38 PRK06488 sulfur carrier protei 96.9 0.0022 4.7E-08 54.8 5.7 50 788-838 5-60 (65)
39 cd01666 TGS_DRG_C TGS_DRG_C: 96.8 0.00048 1E-08 61.2 1.2 46 584-631 21-75 (75)
40 PRK05863 sulfur carrier protei 96.3 0.0065 1.4E-07 52.2 5.1 53 786-838 3-60 (65)
41 PRK06083 sulfur carrier protei 96.3 0.01 2.2E-07 53.8 6.3 57 782-838 17-79 (84)
42 cd00754 MoaD Ubiquitin domain 95.9 0.014 3.1E-07 50.9 5.4 48 791-838 18-75 (80)
43 PLN02799 Molybdopterin synthas 95.9 0.017 3.7E-07 51.3 5.8 49 789-837 19-76 (82)
44 cd01668 TGS_RelA_SpoT TGS_RelA 95.4 0.011 2.5E-07 48.4 2.6 48 577-631 3-60 (60)
45 PTZ00258 GTP-binding protein; 95.1 0.032 6.9E-07 63.7 5.9 56 782-837 304-385 (390)
46 PF02597 ThiS: ThiS family; I 95.1 0.032 7E-07 48.3 4.6 47 791-837 14-71 (77)
47 COG2914 Uncharacterized protei 94.8 0.047 1E-06 50.5 5.0 54 779-837 12-74 (99)
48 COG1163 DRG Predicted GTPase [ 94.8 0.019 4.1E-07 63.7 2.9 45 793-837 308-363 (365)
49 PRK14707 hypothetical protein; 94.7 0.081 1.8E-06 69.4 8.2 114 413-542 2302-2424(2710)
50 TIGR01682 moaD molybdopterin c 93.8 0.14 3.1E-06 45.2 5.9 47 791-837 18-74 (80)
51 PLN02908 threonyl-tRNA synthet 93.4 0.42 9.1E-06 58.5 10.7 89 731-838 19-112 (686)
52 PRK12444 threonyl-tRNA synthet 92.7 0.21 4.5E-06 60.4 6.8 56 783-838 6-65 (639)
53 cd01616 TGS The TGS domain, na 92.0 0.12 2.7E-06 41.0 2.5 41 584-631 13-60 (60)
54 TIGR03401 cyanamide_fam HD dom 90.1 1.1 2.3E-05 47.9 8.1 63 93-162 30-96 (228)
55 TIGR01687 moaD_arch MoaD famil 89.3 0.74 1.6E-05 41.3 5.3 45 792-837 19-82 (88)
56 PRK01777 hypothetical protein; 89.0 0.29 6.4E-06 45.5 2.5 46 583-633 22-77 (95)
57 PF01966 HD: HD domain; Inter 88.9 0.56 1.2E-05 42.5 4.3 38 127-164 2-41 (122)
58 PRK14707 hypothetical protein; 88.7 0.85 1.8E-05 60.6 7.0 103 427-541 2544-2654(2710)
59 TIGR02988 YaaA_near_RecF S4 do 88.6 0.4 8.6E-06 40.2 2.9 27 810-836 31-58 (59)
60 PRK09602 translation-associate 88.6 0.15 3.3E-06 58.4 0.5 45 584-633 345-396 (396)
61 PRK12703 tRNA 2'-O-methylase; 88.5 1.9 4E-05 48.8 8.8 125 49-187 123-257 (339)
62 PRK11130 moaD molybdopterin sy 88.2 1.4 3.1E-05 39.2 6.4 41 797-837 24-75 (81)
63 PF01479 S4: S4 domain; Inter 87.2 0.34 7.3E-06 38.6 1.5 25 810-834 23-48 (48)
64 PRK09169 hypothetical protein; 87.0 1.8 3.8E-05 58.4 8.5 109 422-542 1916-2034(2316)
65 PRK09601 GTP-binding protein Y 86.9 0.52 1.1E-05 53.6 3.4 47 791-837 292-361 (364)
66 PRK05659 sulfur carrier protei 85.9 0.69 1.5E-05 39.3 2.9 43 583-632 11-62 (66)
67 PF14453 ThiS-like: ThiS-like 85.0 2.7 5.8E-05 35.9 5.9 49 789-837 6-54 (57)
68 cd01764 Urm1 Urm1-like ubuitin 84.0 2 4.3E-05 39.8 5.1 41 797-837 27-88 (94)
69 cd01667 TGS_ThrRS_N TGS _ThrRS 83.4 0.93 2E-05 36.2 2.5 41 584-631 13-60 (61)
70 PRK00413 thrS threonyl-tRNA sy 83.3 0.81 1.8E-05 55.2 3.0 46 583-635 13-65 (638)
71 smart00363 S4 S4 RNA-binding d 82.2 1.2 2.5E-05 35.3 2.6 26 812-837 25-51 (60)
72 COG2104 ThiS Sulfur transfer p 80.9 1.3 2.9E-05 38.8 2.6 41 584-631 14-63 (68)
73 cd00565 ThiS ThiaminS ubiquiti 79.8 1.4 3.1E-05 37.5 2.4 22 609-632 36-61 (65)
74 COG1188 Ribosome-associated he 78.8 2.1 4.5E-05 40.4 3.3 26 812-837 33-58 (100)
75 PRK07440 hypothetical protein; 78.2 2 4.4E-05 37.6 2.9 43 583-632 15-66 (70)
76 COG1418 Predicted HD superfami 76.9 2.8 6E-05 44.6 4.1 44 122-165 33-76 (222)
77 PRK06437 hypothetical protein; 76.6 1.6 3.5E-05 37.8 1.9 42 584-632 17-63 (67)
78 smart00471 HDc Metal dependent 73.5 2.2 4.8E-05 37.9 2.0 42 123-164 2-44 (124)
79 cd04938 TGS_Obg-like TGS_Obg-l 71.9 2.9 6.4E-05 37.3 2.4 42 584-631 28-76 (76)
80 cd00165 S4 S4/Hsp/ tRNA synthe 71.2 3.8 8.3E-05 33.3 2.8 26 811-836 24-50 (70)
81 COG1977 MoaD Molybdopterin con 69.2 4.3 9.3E-05 36.7 2.8 23 815-837 56-78 (84)
82 PF00498 FHA: FHA domain; Int 68.2 3.7 8E-05 34.6 2.1 24 813-836 42-67 (68)
83 PRK08053 sulfur carrier protei 67.4 4.9 0.00011 34.5 2.7 22 609-632 37-62 (66)
84 PRK08364 sulfur carrier protei 67.0 5 0.00011 35.0 2.7 22 609-632 45-66 (70)
85 PF03658 Ub-RnfH: RnfH family 65.1 2.8 6E-05 38.4 0.8 21 610-632 53-73 (84)
86 PRK07696 sulfur carrier protei 64.5 5.8 0.00013 34.4 2.6 22 609-632 38-63 (67)
87 PRK10119 putative hydrolase; P 60.6 18 0.00039 38.9 6.0 59 101-162 4-62 (231)
88 COG0012 Predicted GTPase, prob 60.2 3.1 6.7E-05 47.5 0.2 46 791-836 320-368 (372)
89 PRK06488 sulfur carrier protei 59.9 9.3 0.0002 32.5 3.1 22 609-632 36-61 (65)
90 TIGR00277 HDIG uncharacterized 58.8 8.7 0.00019 32.4 2.7 39 124-162 3-41 (80)
91 TIGR01683 thiS thiamine biosyn 57.6 9.8 0.00021 32.4 2.8 22 609-632 35-60 (64)
92 PRK05327 rpsD 30S ribosomal pr 57.0 9.4 0.0002 40.2 3.1 27 811-837 116-143 (203)
93 PF13510 Fer2_4: 2Fe-2S iron-s 52.7 28 0.00062 31.2 5.1 55 782-836 2-79 (82)
94 cd00077 HDc Metal dependent ph 52.7 6.2 0.00014 35.6 0.9 40 125-164 2-44 (145)
95 PRK00413 thrS threonyl-tRNA sy 52.0 11 0.00025 45.5 3.2 28 811-838 34-61 (638)
96 PF06071 YchF-GTPase_C: Protei 50.6 11 0.00024 34.6 2.1 46 792-837 14-82 (84)
97 TIGR00488 putative HD superfam 49.8 11 0.00024 37.5 2.2 39 124-162 7-45 (158)
98 TIGR01017 rpsD_bact ribosomal 49.7 15 0.00032 38.6 3.2 27 811-837 113-140 (200)
99 PRK06944 sulfur carrier protei 47.9 16 0.00034 30.8 2.6 22 609-632 36-61 (65)
100 PRK03826 5'-nucleotidase; Prov 47.8 27 0.00058 36.6 4.7 40 124-163 27-72 (195)
101 CHL00113 rps4 ribosomal protei 47.1 16 0.00035 38.5 3.0 28 810-837 111-139 (201)
102 COG0522 RpsD Ribosomal protein 46.9 20 0.00044 37.9 3.7 28 810-837 116-144 (205)
103 TIGR00295 conserved hypothetic 45.9 16 0.00036 36.8 2.7 39 124-162 12-55 (164)
104 COG1713 Predicted HD superfami 45.5 12 0.00027 39.0 1.8 43 123-165 15-57 (187)
105 PRK11507 ribosome-associated p 44.3 23 0.00049 31.6 3.0 27 810-836 34-61 (70)
106 TIGR03069 PS_II_S4 photosystem 43.8 21 0.00045 38.9 3.3 28 810-837 205-233 (257)
107 PLN00051 RNA-binding S4 domain 42.8 21 0.00045 39.3 3.1 28 810-837 213-241 (267)
108 COG4341 Predicted HD phosphohy 42.4 44 0.00095 34.5 5.0 35 121-160 24-60 (186)
109 PRK06083 sulfur carrier protei 42.1 12 0.00027 34.1 1.1 22 609-632 55-80 (84)
110 PF14451 Ub-Mut7C: Mut7-C ubiq 41.6 19 0.00041 32.7 2.2 21 609-631 55-75 (81)
111 cd00754 MoaD Ubiquitin domain 41.2 21 0.00046 30.9 2.4 22 609-632 55-76 (80)
112 cd04867 TGS_YchF_C TGS_YchF_C: 40.1 27 0.00059 32.1 2.9 43 791-837 13-82 (83)
113 PF13023 HD_3: HD domain; PDB: 39.7 16 0.00035 36.9 1.6 40 123-163 20-62 (165)
114 COG1977 MoaD Molybdopterin con 38.8 32 0.00069 31.1 3.2 30 596-632 51-80 (84)
115 PRK07152 nadD putative nicotin 37.1 20 0.00043 40.3 1.9 39 124-162 195-233 (342)
116 PRK00106 hypothetical protein; 36.4 27 0.00058 42.1 2.9 42 122-163 347-388 (535)
117 cd01809 Scythe_N Ubiquitin-lik 36.2 93 0.002 26.2 5.5 56 782-837 2-70 (72)
118 COG1078 HD superfamily phospho 35.2 22 0.00048 41.5 1.9 35 126-160 52-95 (421)
119 COG3383 Uncharacterized anaero 34.7 68 0.0015 40.1 5.9 55 782-836 4-76 (978)
120 PRK12705 hypothetical protein; 34.1 32 0.0007 41.1 3.1 41 122-162 320-360 (508)
121 PRK11025 23S rRNA pseudouridyl 33.2 32 0.0007 38.3 2.8 25 812-836 44-68 (317)
122 PF02597 ThiS: ThiS family; I 33.1 36 0.00078 29.2 2.5 22 609-632 49-73 (77)
123 PRK12704 phosphodiesterase; Pr 32.7 34 0.00074 41.0 3.0 40 123-162 333-372 (520)
124 COG0564 RluA Pseudouridylate s 32.3 32 0.00068 38.2 2.5 25 813-837 37-61 (289)
125 COG2302 Uncharacterized conser 32.1 36 0.00078 37.2 2.8 28 810-837 202-230 (257)
126 PLN02799 Molybdopterin synthas 29.6 43 0.00093 29.6 2.5 22 609-632 57-78 (82)
127 TIGR03319 YmdA_YtgF conserved 29.5 39 0.00085 40.4 2.8 40 123-162 327-366 (514)
128 PF12917 HD_2: HD containing h 29.4 70 0.0015 34.3 4.3 109 124-242 28-142 (215)
129 PRK11840 bifunctional sulfur c 29.1 41 0.00088 38.1 2.7 24 799-822 259-282 (326)
130 PRK10348 ribosome-associated h 29.0 56 0.0012 32.5 3.3 27 811-837 32-58 (133)
131 PTZ00305 NADH:ubiquinone oxido 27.1 97 0.0021 34.8 5.1 50 787-836 72-142 (297)
132 COG1896 Predicted hydrolases o 26.0 1.8E+02 0.0039 30.5 6.6 104 121-242 29-141 (193)
133 PTZ00258 GTP-binding protein; 25.6 41 0.00088 39.0 1.9 49 584-632 320-387 (390)
134 TIGR00384 dhsB succinate dehyd 25.5 74 0.0016 33.6 3.8 40 793-832 19-77 (220)
135 COG2914 Uncharacterized protei 24.8 99 0.0022 29.3 3.9 46 583-633 22-77 (99)
136 PF13275 S4_2: S4 domain; PDB: 24.6 38 0.00082 29.7 1.1 23 814-836 34-57 (65)
137 PRK11180 rluD 23S rRNA pseudou 24.5 60 0.0013 36.3 3.0 27 811-837 41-68 (325)
138 TIGR01682 moaD molybdopterin c 24.2 79 0.0017 27.8 3.1 21 609-631 55-75 (80)
139 cd01805 RAD23_N Ubiquitin-like 24.1 2.5E+02 0.0053 24.1 6.2 56 782-837 2-72 (77)
140 KOG3148 Glucosamine-6-phosphat 24.1 40 0.00088 35.4 1.4 22 783-804 24-48 (273)
141 PRK01286 deoxyguanosinetriphos 24.0 50 0.0011 37.6 2.2 61 101-161 33-98 (336)
142 PRK11130 moaD molybdopterin sy 23.6 86 0.0019 27.9 3.3 21 609-631 56-76 (81)
143 PRK03007 deoxyguanosinetriphos 23.4 51 0.0011 38.6 2.3 61 101-161 41-106 (428)
144 PF04753 Corona_NS2: Coronavir 22.8 44 0.00096 31.5 1.3 12 278-289 20-31 (109)
145 COG2501 S4-like RNA binding pr 22.7 76 0.0017 28.6 2.6 26 811-836 35-61 (73)
146 PRK12577 succinate dehydrogena 22.3 1.2E+02 0.0026 34.2 4.8 39 792-830 22-78 (329)
147 cd00060 FHA Forkhead associate 22.0 91 0.002 27.5 3.1 24 814-837 67-92 (102)
148 COG3400 Uncharacterized protei 21.1 1E+02 0.0022 35.6 3.8 64 770-837 132-206 (471)
149 PF05153 DUF706: Family of unk 21.0 1.3E+02 0.0028 33.0 4.5 52 104-160 41-93 (253)
150 PF12791 RsgI_N: Anti-sigma fa 20.4 89 0.0019 25.8 2.5 23 778-800 3-25 (56)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=9.9e-130 Score=1127.27 Aligned_cols=464 Identities=39% Similarity=0.620 Sum_probs=421.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHH
Q 003224 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173 (838)
Q Consensus 94 ~~y~~~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~ 173 (838)
..|.......+.+|+.||.++|.+|+|+||+|||.||++||.||+++.+ |.++++||||||++|||++|.++|++
T Consensus 17 ~~~~~~~~~~l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~-----d~~tl~AaLLHD~vEDt~~t~e~i~~ 91 (701)
T COG0317 17 ATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHM-----DMETLAAALLHDTIEDTPVTEELIEE 91 (701)
T ss_pred HhcCChHHHHHHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccC-----CHHHHHHHHccchHhcCCCCHHHHHH
Confidence 4444444555999999999999999999999999999999999999985 78999999999999999999999999
Q ss_pred HhcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHH
Q 003224 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253 (838)
Q Consensus 174 ~FG~eVA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq 253 (838)
.||++|++||+||||+..+..+. .....|+||+|||++||++|+||++|||||||||||||..++++||
T Consensus 92 ~FG~eVa~LV~GvTkl~~i~~~~-----------~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~ 160 (701)
T COG0317 92 IFGKEVAKLVEGVTKLKKIGQLS-----------SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR 160 (701)
T ss_pred HHCHHHHHHHhhHHHhhhhhccC-----------ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence 99999999999999999874211 1223489999999999999999999999999999999999889999
Q ss_pred HHHHHHhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCcccccccccccccCCCCCccCccCCC
Q 003224 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 333 (838)
Q Consensus 254 ~~iA~ETl~IYAPLA~RLGl~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 333 (838)
+++|+||++||||||||||||++|||||||||+||+|+.|+.|.+.|.+
T Consensus 161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e------------------------------- 209 (701)
T COG0317 161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDE------------------------------- 209 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999999986
Q ss_pred CcccchhhhhhhHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCC
Q 003224 334 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYG 413 (838)
Q Consensus 334 ~~~~~~~~~~~~~k~ll~a~~~~d~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~L~~~l~~~~~~~ 413 (838)
+|.+|+.+++++. +.+++.|.+
T Consensus 210 ---------------------------~r~~re~~i~~~~----------------------~~l~~~L~~--------- 231 (701)
T COG0317 210 ---------------------------KRLEREQYIENVV----------------------SELREELKA--------- 231 (701)
T ss_pred ---------------------------HHHHHHHHHHHHH----------------------HHHHHHHHH---------
Confidence 4889999998876 244556654
Q ss_pred CCCCceEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccc
Q 003224 414 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYI 493 (838)
Q Consensus 414 ~~~gi~~~I~gR~K~~ySI~~Km~Rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYI 493 (838)
.|+.++|+||+||+||||+||++|+..|++|+|++||||||++ +.|||++||+||.+|+|+|+||||||
T Consensus 232 --~gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~---------~~dCY~~LGiVH~~~kp~PgrFKDYI 300 (701)
T COG0317 232 --AGIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALGIVHTLWKPIPGEFDDYI 300 (701)
T ss_pred --cCCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC---------hHHHHHHHHHHHhcCcCCCCcccccc
Confidence 3788999999999999999999999999999999999999996 88999999999999999999999999
Q ss_pred cCCCCCCCceeEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhcccccCCccccccccccchHHHhccCCCCCCCCCcc
Q 003224 494 VNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPL 573 (838)
Q Consensus 494 a~PK~NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~ 573 (838)
|+||+||||||||||.||.|.++||||||..||+.||+|+||||.||+++......-.+-++|.+|++...++.||++++
T Consensus 301 A~PK~NgYQSlHTtv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~~~~~~~~Wlr~lle~q~~~~d~~ef~e~~ 380 (701)
T COG0317 301 ANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGSAYEEKIAWLRQLLEWQEESADSGEFLEQL 380 (701)
T ss_pred ccCCCCCCceeEEEEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCchhhHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987322111123355678888888789999999
Q ss_pred ccc-------ccccccc---CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC--C
Q 003224 574 DTD-------LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--F 634 (838)
Q Consensus 574 ~~d-------vftpkg~---lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~--~ 634 (838)
|.| ||||||+ ||.|+||+|| |||+|+|||| ||| +|||+|+|+|||+|||+|++ +
T Consensus 381 k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkV-----nG~--ivpl~~~Lk~Gd~VEIit~k~~~ 453 (701)
T COG0317 381 KSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKV-----NGR--IVPLTTKLQTGDQVEIITSKHAG 453 (701)
T ss_pred hhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEE-----CCE--EeccceecCCCCEEEEEeCCCCC
Confidence 998 4799994 8999999877 9999999999 999 99999999999999999998 5
Q ss_pred cchhHHHHHHHhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeecccccccCC
Q 003224 635 QIKCWEAYARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLP 688 (838)
Q Consensus 635 p~~dWL~~v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~~~~ 688 (838)
|++|||+||+|+||++| +-|| ...+.+.++++ |+--+...|+++-.
T Consensus 454 Ps~~Wl~~v~t~kAR~kIr~~~--k~~~re~~i~~------G~~lLe~~l~~~g~ 500 (701)
T COG0317 454 PSRDWLNFVVTSRARAKIRAWF--KKQDRDENVEA------GRELLEKELSRLGL 500 (701)
T ss_pred CCHHHHHHHhhHHHHHHHHHHH--HHHHHHhHHHH------HHHHHHHHHHHcCC
Confidence 99999999999999999 7777 89999999999 99999999998765
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=4.4e-124 Score=1094.79 Aligned_cols=464 Identities=30% Similarity=0.498 Sum_probs=407.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHH
Q 003224 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173 (838)
Q Consensus 94 ~~y~~~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~ 173 (838)
..|...+.+.|++|+.||.++|.| |+||||||.||++||.|||++++ |.++|+||||||+||||++|.++|++
T Consensus 25 ~~~~~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~-----D~~ti~AaLLHD~vedt~~t~e~i~~ 97 (743)
T PRK10872 25 GITSQQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSM-----DIDTLRAALLFPLADANVVSEDVLRE 97 (743)
T ss_pred HhhhHHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCC-----CHHHHHHHHhhhhHhcCCCCHHHHHH
Confidence 344433557899999999999999 89999999999999999999985 78999999999999999999999999
Q ss_pred HhcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHH
Q 003224 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253 (838)
Q Consensus 174 ~FG~eVA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq 253 (838)
.||++||.||+||||++.+....+.. .......|+||||||||||++|+||+||||||||||||||..+|++||
T Consensus 98 ~FG~~Va~lVdgvtKl~~i~~~~~~~------~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq 171 (743)
T PRK10872 98 SVGKSIVNLIHGVRDMDAIRQLKATH------NDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDER 171 (743)
T ss_pred HHCHHHHHHHHHHHHHHHhhhhhccc------ccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999875421000 012234599999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCcccccccccccccCCCCCccCccCCC
Q 003224 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 333 (838)
Q Consensus 254 ~~iA~ETl~IYAPLA~RLGl~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 333 (838)
+++|+||++||||||||||||+||||||||||+||+|+.|+.|++.|.+
T Consensus 172 ~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~------------------------------- 220 (743)
T PRK10872 172 VLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHE------------------------------- 220 (743)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999999975
Q ss_pred CcccchhhhhhhHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCC
Q 003224 334 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYG 413 (838)
Q Consensus 334 ~~~~~~~~~~~~~k~ll~a~~~~d~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~L~~~l~~~~~~~ 413 (838)
+|.+|+.|++.+. ..+++.|.+
T Consensus 221 ---------------------------~~~~r~~~i~~~~----------------------~~l~~~L~~--------- 242 (743)
T PRK10872 221 ---------------------------RRIDREHYIEEFV----------------------GHLRAEMKA--------- 242 (743)
T ss_pred ---------------------------HHHHHHHHHHHHH----------------------HHHHHHHHh---------
Confidence 4778999999876 234455644
Q ss_pred CCCCceEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccc
Q 003224 414 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYI 493 (838)
Q Consensus 414 ~~~gi~~~I~gR~K~~ySI~~Km~Rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYI 493 (838)
.|++++|+||+||+||||+||++|+.+|++|+|++|+||||++ +.+||++||+||++|+|+|++|||||
T Consensus 243 --~~i~~~v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~---------~~dCY~vLg~ih~~~~pip~~fkDYI 311 (743)
T PRK10872 243 --EGVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER---------LQDCYAALGIVHTHYRHLPDEFDDYV 311 (743)
T ss_pred --cCCceEEEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC---------HHHHHHHHHHHHhhccCCcchhhhcc
Confidence 2778899999999999999999999999999999999999985 88999999999999999999999999
Q ss_pred cCCCCCCCceeEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhcccccCCccccccccc------cchHHHhccCCCCC
Q 003224 494 VNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD------ESDIEASSSLSKDT 567 (838)
Q Consensus 494 a~PK~NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~------~~l~~~~~~~~~~~ 567 (838)
++||+||||||||+|.+|+|.++||||||..||.+||+|+||||+||++...+.....++ ++|.+|++...++.
T Consensus 312 a~PK~NGYqSLHttv~~~~g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~~~~~~~~~wLr~lle~~~~~~d~~ 391 (743)
T PRK10872 312 ANPKPNGYQSIHTVVLGPGGKTVEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGRSGHEDRIAWLRKLIAWQEEMADSG 391 (743)
T ss_pred cCCCCCCcceeEEEEECCCCcEEEEEEEcHHHHHHHhhhHHHHHhccCCCCccccccchHHHHHHHHHHHHHHhccCCHH
Confidence 999999999999999999999999999999999999999999999998643210111222 33456666655668
Q ss_pred CCCCccccc-------ccccccc---CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEc
Q 003224 568 DDHNPLDTD-------LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADR 630 (838)
Q Consensus 568 e~~~~~~~d-------vftpkg~---lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ 630 (838)
||++.+|.| ||||+|+ ||.|+||+|| +|++|+|||| ||+ +||++|+|++||+|||+
T Consensus 392 ef~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkv-----ng~--~v~l~~~L~~GD~VeIi 464 (743)
T PRK10872 392 EMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKI-----GGR--IVPFTYQLQMGDQIEII 464 (743)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEE-----CCE--ECCCCcCCCCCCEEEEE
Confidence 999999877 5799995 8999999776 9999999999 999 99999999999999999
Q ss_pred CCCC--cchhHHH----HHHHhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeecccccc
Q 003224 631 RPSF--QIKCWEA----YARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 685 (838)
Q Consensus 631 ts~~--p~~dWL~----~v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~ 685 (838)
|+++ |++|||+ ||+|+||+++ +-|| ++.+.+.+++. |+-.+...|.+
T Consensus 465 ts~~~~Ps~dWL~~~lg~v~T~rAR~kIr~~~--k~~~~~~~i~~------Gr~lL~k~l~~ 518 (743)
T PRK10872 465 TQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWF--RKQDRDKNILA------GRQILDDELEH 518 (743)
T ss_pred eCCCCCCChhHhccccCeeeCHHHHHHHHHHH--HHHHHHHHHHH------HHHHHHHHHHh
Confidence 9984 9999999 9999999999 6666 66777777766 77666666654
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=4.1e-122 Score=1080.04 Aligned_cols=455 Identities=34% Similarity=0.525 Sum_probs=407.0
Q ss_pred CHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHHH
Q 003224 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEV 179 (838)
Q Consensus 100 ~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~eV 179 (838)
+.+++.+|+.||.++|.||+|++|+||+.||++||.||+++.+ |.++|+||||||++|||++|.++|++.||++|
T Consensus 19 ~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~-----D~~ti~AaLLHDvvEDt~~t~e~i~~~FG~~V 93 (702)
T PRK11092 19 QIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRL-----DYETLMAALLHDVIEDTPATYQDMEQLFGKSV 93 (702)
T ss_pred HHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHHHhcccchhhhCCCCHHHHHHHHCHHH
Confidence 4578999999999999999999999999999999999999864 78999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHHHHHHHH
Q 003224 180 AKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 259 (838)
Q Consensus 180 A~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~E 259 (838)
+.||+||||++.++.. .....|+|++||||++|++|+||++|||||||||||||..+|+++|+++|+|
T Consensus 94 a~lV~gvTk~~~l~~~------------~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~iA~E 161 (702)
T PRK11092 94 AELVEGVSKLDKLKFR------------DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARE 161 (702)
T ss_pred HHHHHHHHhhcccccc------------chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHHHHHH
Confidence 9999999999876431 1123489999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCcccccccccccccCCCCCccCccCCCCcccch
Q 003224 260 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF 339 (838)
Q Consensus 260 Tl~IYAPLA~RLGl~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (838)
|++||||||||||||+||||||||||+||+|+.|+.|++.|.+
T Consensus 162 Tl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~------------------------------------- 204 (702)
T PRK11092 162 TLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKA------------------------------------- 204 (702)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999999875
Q ss_pred hhhhhhHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCce
Q 003224 340 DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYGYIPGME 419 (838)
Q Consensus 340 ~~~~~~~k~ll~a~~~~d~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~L~~~l~~~~~~~~~~gi~ 419 (838)
.|.+|+.|++++. ..+++.|++ .|++
T Consensus 205 ---------------------~~~~r~~~i~~~~----------------------~~l~~~l~~-----------~~i~ 230 (702)
T PRK11092 205 ---------------------ARGNRKEMIQKIL----------------------SEIEGRLQE-----------AGIP 230 (702)
T ss_pred ---------------------HHHHHHHHHHHHH----------------------HHHHHHHHH-----------cCCc
Confidence 4778999998876 244555654 2778
Q ss_pred EEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCCCC
Q 003224 420 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 499 (838)
Q Consensus 420 ~~I~gR~K~~ySI~~Km~Rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~N 499 (838)
++|+||+||+||||+||+||+.+|++|+|++|+||||++ +.|||++||+||++|+|+|++|||||++||+|
T Consensus 231 ~~i~~R~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~---------~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~N 301 (702)
T PRK11092 231 CRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD---------SDTCYRVLGQMHSLYKPRPGRVKDYIAIPKAN 301 (702)
T ss_pred EEEEeccCCHHHHHHHHHHcCCChhHhccceeEEEEECC---------HHHHHHHHHHHHhcCCCCcCccccccCCCCCC
Confidence 999999999999999999999999999999999999985 88999999999999999999999999999999
Q ss_pred CCceeEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhcccccCCcccccc-c---cccchHHHhccCCCCCCCCCcccc
Q 003224 500 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS-S---MDESDIEASSSLSKDTDDHNPLDT 575 (838)
Q Consensus 500 GYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~-~---~~~~l~~~~~~~~~~~e~~~~~~~ 575 (838)
|||||||+|.+|+|.++||||||..||.+||+|+||||+||++.....+.. . +-+++.+|++...++.||++.++.
T Consensus 302 gYqSLHt~v~g~~g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~~~~~~~~~~wlr~ll~~~~~~~~~~ef~~~~~~ 381 (702)
T PRK11092 302 GYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETGTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKS 381 (702)
T ss_pred CCceEEEEEECCCCcEEEEEEEcHHHHHHHhhhhHhhhhhccCCCccchhHHHHHHHHHHHHHHHhhcCChHHHHHHHHh
Confidence 999999999999999999999999999999999999999998643211100 1 123345666655566899999987
Q ss_pred c-------ccccccc---CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCC--cc
Q 003224 576 D-------LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF--QI 636 (838)
Q Consensus 576 d-------vftpkg~---lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~~--p~ 636 (838)
| ||||+|+ ||.|+||+|| +||||+|||| ||+ +|||+|+|+|||+|||+|+++ |+
T Consensus 382 dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkV-----Ng~--~vpL~~~L~~Gd~VeIiT~~~~~P~ 454 (702)
T PRK11092 382 DLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARV-----DRQ--PYPLSQPLTSGQTVEIITAPGARPN 454 (702)
T ss_pred hhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEE-----CCE--ECCCCccCCCCCEEEEEeCCCCCCC
Confidence 7 5799995 8999999877 9999999999 999 999999999999999999974 99
Q ss_pred hhHHHHHHHhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeeccccccc
Q 003224 637 KCWEAYARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 686 (838)
Q Consensus 637 ~dWL~~v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~~ 686 (838)
+|||+||+|+||+++ +-|| ++.+.+.+++. |+--+...|.++
T Consensus 455 ~dWL~~v~T~rAr~kIr~~~--r~~~~~~~i~~------Gr~lL~~~l~~~ 497 (702)
T PRK11092 455 AAWLNFVVSSKARAKIRQLL--KNLKRDDSVSL------GRRLLNHALGGS 497 (702)
T ss_pred hHHHHHhhhHHHHHHHHHHH--HhhhHHHHHHH------HHHHHHHHHHhc
Confidence 999999999999999 6666 77778888777 887777777665
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=5.3e-115 Score=1021.61 Aligned_cols=447 Identities=36% Similarity=0.582 Sum_probs=395.5
Q ss_pred HHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHHHHHHHHHh
Q 003224 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186 (838)
Q Consensus 107 A~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~eVA~LV~gV 186 (838)
|+.||.++|.||+|++|+||+.||++||.||+++++ |.++++||||||+||||++|.++|++.||++|+.||++|
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~-----D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~v 75 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGM-----DEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGV 75 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCC-----CHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHH
Confidence 688999999999999999999999999999999874 789999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHHHHHHHHhHHHHHH
Q 003224 187 SRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266 (838)
Q Consensus 187 TKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~ETl~IYAP 266 (838)
||++.++.. .....|+|++||||++|++|+||++|||||||||||+|..+|+++|+++|+||++||||
T Consensus 76 Tk~~~~~~~------------~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaP 143 (683)
T TIGR00691 76 TKITKLKKK------------SRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAP 143 (683)
T ss_pred HHhcccccc------------hhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHH
Confidence 999876431 11234899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCcccccccccccccCCCCCccCccCCCCcccchhhhhhhH
Q 003224 267 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 346 (838)
Q Consensus 267 LA~RLGl~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (838)
||||||||+||||||||||+||+|+.|+.|++.|++
T Consensus 144 lA~rLG~~~ik~eLedl~f~~l~p~~y~~i~~~l~~-------------------------------------------- 179 (683)
T TIGR00691 144 LAHRLGMSSIKTELEDLSFKYLYPKEYENIKSLVNE-------------------------------------------- 179 (683)
T ss_pred HHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999999999975
Q ss_pred HHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCceEEEEEee
Q 003224 347 KDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYGYIPGMEVTLSSRL 426 (838)
Q Consensus 347 k~ll~a~~~~d~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~L~~~l~~~~~~~~~~gi~~~I~gR~ 426 (838)
.|.+|+.+++.+. ..+++.|.+ .|++++|+||+
T Consensus 180 --------------~~~~~~~~~~~~~----------------------~~l~~~l~~-----------~~i~~~i~~R~ 212 (683)
T TIGR00691 180 --------------QKVNRENKLEKFK----------------------SELEKRLED-----------SGIEAELEGRS 212 (683)
T ss_pred --------------HHHHHHHHHHHHH----------------------HHHHHHHHh-----------cCCceEEEeee
Confidence 4778999998776 234455543 26788999999
Q ss_pred cChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCCCCCCceeEE
Q 003224 427 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 506 (838)
Q Consensus 427 K~~ySI~~Km~Rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~NGYqSLHt 506 (838)
|++||||+||+||+.+|++|+|++|+||||++ +.|||.++|+||++|+|+|++|||||++||+||||||||
T Consensus 213 K~~~Si~~Km~~k~~~~~~i~Di~~~RIi~~~---------~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt 283 (683)
T TIGR00691 213 KHLYSIYQKMTRKGQNFDEIHDLLAIRIIVKS---------ELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHT 283 (683)
T ss_pred CCHHHHHHHHHhcCCCHHHcccceeEEEEECC---------HHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEE
Confidence 99999999999999999999999999999985 889999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEEechhhHHHHHhhhhhhhcccccCCcccccc---ccccchHHHhccCCCCCCCCCccccc-------
Q 003224 507 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS---SMDESDIEASSSLSKDTDDHNPLDTD------- 576 (838)
Q Consensus 507 ~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~---~~~~~l~~~~~~~~~~~e~~~~~~~d------- 576 (838)
+|.+|+|.++||||||..||+|||+|+||||+||++........ .+-+++.+|+....++.+|++.+|.|
T Consensus 284 ~v~~~~g~~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~k~~l~~~~i~ 363 (683)
T TIGR00691 284 TVRGPKGLPVEIQIRTEDMDRVAEYGIAAHWIYKEGNPQKEALIDDMRWLNYLVEWQQESANFFEFIENLKSDLFNEEIY 363 (683)
T ss_pred EEEcCCCCEEEEEEEehHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHhhcccchhHHHHhhHHhccCceE
Confidence 99999999999999999999999999999999998643211111 11133456666655678999998876
Q ss_pred ccccccc---CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC--CcchhHHHHHH
Q 003224 577 LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQIKCWEAYAR 644 (838)
Q Consensus 577 vftpkg~---lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~--~p~~dWL~~v~ 644 (838)
||||+|+ ||.|+||+|| +|++|+|||| ||+ +||++++|++||+|||+|++ +|++|||+||+
T Consensus 364 vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~v-----ng~--~v~l~~~l~~gd~vei~t~~~~~P~~dWL~~v~ 436 (683)
T TIGR00691 364 VFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKV-----NGK--IVPLDKELENGDVVEIITGKNSNPSVIWLNFVV 436 (683)
T ss_pred EECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEE-----CCE--ECCCCccCCCCCEEEEEeCCCCCCCHHHHHHHh
Confidence 5899995 8999999776 9999999999 999 99999999999999999998 59999999999
Q ss_pred HhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeecccccc
Q 003224 645 LYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 685 (838)
Q Consensus 645 t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~ 685 (838)
|+||+++ +-|| +..+.+.+++. |+--+...|.+
T Consensus 437 T~rAR~kIr~~~--k~~~r~~~i~~------G~~lLek~l~~ 470 (683)
T TIGR00691 437 TSKARNKIRQWL--KKLRREVAISE------GKNILEKELGR 470 (683)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHH------HHHHHHHHHHH
Confidence 9999999 5555 56666666666 66555555544
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-74 Score=617.88 Aligned_cols=328 Identities=43% Similarity=0.648 Sum_probs=289.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccccC-cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhc
Q 003224 98 IFNDEQVQKAIAFAKRAHHGQFRKTG-DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (838)
Q Consensus 98 ~~~~~~l~kA~~fA~~aH~gQ~RksG-ePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG 176 (838)
.++.+.+-+|+.+|+.+|++|+|+++ +||+.||+.+|.|||++++ |..+++||+||||||||..|.++|++.||
T Consensus 71 t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~-----ds~Vv~AaiLHDVVDDt~~S~eeI~~~FG 145 (543)
T KOG1157|consen 71 TFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGA-----DSTVVVAAILHDVVDDTFMSYEEILRHFG 145 (543)
T ss_pred cCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhc-----chHHHHHHHHHHHHhhccCCHHHHHHHhC
Confidence 45677899999999999999999975 5999999999999999975 67899999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHHHHH
Q 003224 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAV 256 (838)
Q Consensus 177 ~eVA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~i 256 (838)
..||.||++||+++.+++..|+ + ..|++++| |+.+++. .|++||||||+|||||+|..+||-+|++.
T Consensus 146 ~gVa~LV~EvtddKnL~K~eRk----~-------l~qiet~~-~fyak~s-~RAvLIkLADKLdNMRdL~~lpPvgwq~~ 212 (543)
T KOG1157|consen 146 TGVADLVEEVTDDKNLSKLERK----N-------LTQIETVE-MFYAKAS-ARAVLIKLADKLDNMRDLYALPPVGWQRF 212 (543)
T ss_pred ccHHHHHHHHhcccchhHHHHH----H-------HHHHHHHH-HHHHHHH-HHHHHHHHHHHHhhhhhhhccCcchhHHH
Confidence 9999999999999988765432 1 25788888 6777764 99999999999999999999999999999
Q ss_pred HHHhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCcccccccccccccCCCCCccCccCCCCcc
Q 003224 257 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 336 (838)
Q Consensus 257 A~ETl~IYAPLA~RLGl~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 336 (838)
++||+.|||||||++|++..+.+||+|||+||+|..|-.+..+|...
T Consensus 213 r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~--------------------------------- 259 (543)
T KOG1157|consen 213 RKETLFIWAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDS--------------------------------- 259 (543)
T ss_pred HHHHHHHhhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcc---------------------------------
Confidence 99999999999999999999999999999999999999999999741
Q ss_pred cchhhhhhhHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCCCCC
Q 003224 337 TTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYGYIP 416 (838)
Q Consensus 337 ~~~~~~~~~~k~ll~a~~~~d~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~L~~~l~~~~~~~~~~ 416 (838)
|| +..|...+ ..+++.|..+
T Consensus 260 -------------------~~--------~~mi~~~~----------------------~~l~~~l~~a----------- 279 (543)
T KOG1157|consen 260 -------------------FD--------EAMITSAI----------------------EKLEQALKKA----------- 279 (543)
T ss_pred -------------------cc--------hHHHHHHH----------------------HHHHHHHHhc-----------
Confidence 11 11222111 1233344332
Q ss_pred Cc-eEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccC
Q 003224 417 GM-EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVN 495 (838)
Q Consensus 417 gi-~~~I~gR~K~~ySI~~Km~Rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~ 495 (838)
|+ .+-|+||.|++||||+||.|++...++|+|+.|+|+||++ ..|||+++|+||++|+.+|++.||||+.
T Consensus 280 ~i~~~~i~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~---------~~~cyk~~~vv~slw~evp~k~kdyia~ 350 (543)
T KOG1157|consen 280 GISYHVIKGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDN---------ESDCYKALGVVHSLWSEVPGKLKDYIAH 350 (543)
T ss_pred cceeEEEecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcC---------chHHHHHHHHHHHHHHhCcchhhhhhcC
Confidence 33 3679999999999999999999999999999999999996 4699999999999999999999999999
Q ss_pred CCCCCCceeEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhcccccCCc
Q 003224 496 PKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 545 (838)
Q Consensus 496 PK~NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~ 545 (838)
||.||||||||+|.+..-.|+||||||..||--||+|.||||+||++...
T Consensus 351 pk~ngy~slh~~v~~d~~~plevqirt~em~~~a~~g~aah~~yk~g~~~ 400 (543)
T KOG1157|consen 351 PKFNGYQSLHTVVMVDGTRPLEVQIRTMEMHLQAEFGFAAHWRYKEGKTS 400 (543)
T ss_pred ccccccceeeeEEecCCcceeEEEEeeeccccccccchhhHhhhhcCCCC
Confidence 99999999999999855679999999999999999999999999998544
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=8.6e-39 Score=312.94 Aligned_cols=153 Identities=48% Similarity=0.747 Sum_probs=97.6
Q ss_pred HHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHHHHHHHHHh
Q 003224 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186 (838)
Q Consensus 107 A~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~eVA~LV~gV 186 (838)
|+.||.++|.+|++++|+||+.||++||.+|++++. |.++++||||||++|||..+ ++|++.||++|+++|.++
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~-----d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~l 74 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGL-----DEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDAL 74 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS--------HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHH
Confidence 789999999999999999999999999999998864 68999999999999999555 999999999999999999
Q ss_pred hhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHHHHHHHHhHHHHHH
Q 003224 187 SRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266 (838)
Q Consensus 187 TKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~ETl~IYAP 266 (838)
|+++.+.... + ......+.+++|+||++|++|+||++|||||||||||++...|+++++++|+||++||+|
T Consensus 75 t~~~~~~~~~-~--------~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~ap 145 (153)
T PF13328_consen 75 TKIKKLSKKP-W--------EERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAP 145 (153)
T ss_dssp ---TTS-HH------------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT--------------
T ss_pred Hhcccccccc-c--------hhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhcccccccc
Confidence 9998876530 1 112356899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChH
Q 003224 267 LASRLGLW 274 (838)
Q Consensus 267 LA~RLGl~ 274 (838)
||||||||
T Consensus 146 LA~rLGiw 153 (153)
T PF13328_consen 146 LAHRLGIW 153 (153)
T ss_dssp --------
T ss_pred ccccccCC
Confidence 99999998
No 7
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.95 E-value=4.8e-28 Score=225.21 Aligned_cols=108 Identities=37% Similarity=0.548 Sum_probs=94.0
Q ss_pred EeecChhHHHHHHHhcCC---CCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCCCCC
Q 003224 424 SRLKSLYSIFSKMRRKDV---GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 500 (838)
Q Consensus 424 gR~K~~ySI~~Km~Rk~~---~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~NG 500 (838)
+|+|+++|+++|+.|++. .+.+|+|++|+||||.+ ..|||.++++|++.|.+.+.+++|||+.||.||
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~---------~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~G 71 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYF---------PDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNG 71 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESS---------CCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEee---------HHHHHHHHHHHHHcCCcccccccccccccccCC
Confidence 699999999999999874 78999999999999986 569999999999999999999999999999999
Q ss_pred CceeEEEE---EcCCCcEEEEEEechhhHHHHHhhhhhhhccccc
Q 003224 501 YQSLHTAV---QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 542 (838)
Q Consensus 501 YqSLHt~V---~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 542 (838)
|||+|++| ..+.+.++||||||.+||.|||..| ||.||.+
T Consensus 72 Yrs~H~~v~~~~~~~~~~~EiQIrT~~~~~waei~h--~~~YK~~ 114 (115)
T PF04607_consen 72 YRSLHYIVPENESFKGYPFEIQIRTLLQHAWAEIEH--DLRYKSS 114 (115)
T ss_dssp --EEEEEEEETTECEEEEEEEEEEEHHHHHHHHHHH--HHHHHCT
T ss_pred cEeeEeeeeecccCCCceeeeeeccHHHHHHHHHHH--HHhCCCC
Confidence 99999999 3457889999999999999999655 8999964
No 8
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.94 E-value=6.2e-27 Score=222.62 Aligned_cols=104 Identities=45% Similarity=0.770 Sum_probs=99.0
Q ss_pred eEEEEEeecChhHHHHHHHhcCCCC---CcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccC
Q 003224 419 EVTLSSRLKSLYSIFSKMRRKDVGI---HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVN 495 (838)
Q Consensus 419 ~~~I~gR~K~~ySI~~Km~Rk~~~~---~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~ 495 (838)
.+.|++|+|+++|+++||.+++.+. ++|+|++|+||||++ ..|||.+++.|++.|+++|++++|||+.
T Consensus 20 ~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~---------~~d~~~v~~~l~~~f~~~~~~~~D~~~~ 90 (129)
T cd05399 20 VASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF---------VDDCYRVLDLLHSLFKVIPGRVKDYIAE 90 (129)
T ss_pred CcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC---------HHHHHHHHHHHHhCCcccCccccCCcCC
Confidence 4689999999999999999998777 899999999999985 7899999999999999999999999999
Q ss_pred CCCCCCceeEEEEEcCC---CcEEEEEEechhhHHHHHh
Q 003224 496 PKPSGYQSLHTAVQGPD---GSALEVQIRTQKMHEYAEH 531 (838)
Q Consensus 496 PK~NGYqSLHt~V~~p~---g~~vEIQIRT~~Mh~~AE~ 531 (838)
||+|||||+|++|..++ |.++||||||..||.|||.
T Consensus 91 p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 91 PKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred CCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 99999999999999887 8999999999999999984
No 9
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=99.94 E-value=3.3e-27 Score=275.17 Aligned_cols=91 Identities=30% Similarity=0.446 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCCeEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003224 739 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 814 (838)
Q Consensus 739 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~-- 814 (838)
.+++.|||+|+|||++..|+.|| ++++|.|||+|+||||||||+|++||.||||+||||+|| +|++|
T Consensus 354 ~~~~~Wlr~lle~q~~~~d~~ef---------~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~g 424 (701)
T COG0317 354 EEKIAWLRQLLEWQEESADSGEF---------LEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIG 424 (701)
T ss_pred hHHHHHHHHHHHHHHhcCCcHHH---------HHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeE
Confidence 67999999999999999877555 599999999999999999999999999999999999999 99998
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003224 815 VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 815 ~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
|||||++|||+|+|+|||+|||+|
T Consensus 425 AkVnG~ivpl~~~Lk~Gd~VEIit 448 (701)
T COG0317 425 AKVNGRIVPLTTKLQTGDQVEIIT 448 (701)
T ss_pred EEECCEEeccceecCCCCEEEEEe
Confidence 699999999999999999999997
No 10
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.92 E-value=1e-25 Score=232.28 Aligned_cols=121 Identities=33% Similarity=0.441 Sum_probs=106.1
Q ss_pred CCCCCceEEEEEeecChhHHHHHHHhcCCCC------CcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCcc
Q 003224 413 GYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI------HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 486 (838)
Q Consensus 413 ~~~~gi~~~I~gR~K~~ySI~~Km~Rk~~~~------~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~ 486 (838)
++.|.. .|++|+|++.||..|++|||.++ ++|+|++||||+|. |++|.|.+..++.+...-..
T Consensus 48 ~~~pie--~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~---------F~~DI~~v~~~l~~~~d~~i 116 (231)
T COG2357 48 DYNPIE--HVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQ---------FVDDIYRVVDLLKSRKDFTI 116 (231)
T ss_pred CCCchH--HHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeee---------hHhhHHHHHHHHhcccCccc
Confidence 456654 58999999999999999999543 58999999999998 58899999999998766555
Q ss_pred ccccccccCCCCCCCceeEEEEEcCC-------CcEEEEEEechhhHHHHHhhhhhhhcccccCCcc
Q 003224 487 GEFDDYIVNPKPSGYQSLHTAVQGPD-------GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 546 (838)
Q Consensus 487 ~r~kDYIa~PK~NGYqSLHt~V~~p~-------g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~ 546 (838)
...||||.+||+|||||+|++|..|- +..+||||||.+||.||++.| ..+||.++..|
T Consensus 117 v~~kDyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH--~l~YKy~~~~P 181 (231)
T COG2357 117 VEEKDYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEH--KLRYKYGGEVP 181 (231)
T ss_pred hhHHHHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHH--HhhccccccCh
Confidence 68899999999999999999998763 379999999999999999999 58999887666
No 11
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=99.92 E-value=5.4e-26 Score=268.69 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCCeEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003224 739 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 814 (838)
Q Consensus 739 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~-- 814 (838)
.+++.|||+|++||++..++.+| ++.+|.|||+++||||||||+|+.||.||||+||||+|| +|++|
T Consensus 353 ~~~~~wlr~ll~~~~~~~~~~ef---------~~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~g 423 (702)
T PRK11092 353 IRAQRWMQSLLELQQSAGSSFEF---------IESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVG 423 (702)
T ss_pred HHHHHHHHHHHHHHhhcCChHHH---------HHHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEE
Confidence 34589999999999987776665 589999999999999999999999999999999999999 99988
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003224 815 VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 815 ~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
|||||++|||+|+|+|||+|||+|
T Consensus 424 AkVNg~~vpL~~~L~~Gd~VeIiT 447 (702)
T PRK11092 424 ARVDRQPYPLSQPLTSGQTVEIIT 447 (702)
T ss_pred EEECCEECCCCccCCCCCEEEEEe
Confidence 699999999999999999999997
No 12
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=99.90 E-value=3.4e-24 Score=253.39 Aligned_cols=92 Identities=24% Similarity=0.433 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCCeEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce-
Q 003224 738 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL- 814 (838)
Q Consensus 738 ~~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~- 814 (838)
++.++.|||+|+|||++..|+.+| ++++|.|||+++||||||+|+++.||.||||+||||+|| +|++|
T Consensus 370 ~~~~~~wLr~lle~~~~~~d~~ef---------~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~ 440 (743)
T PRK10872 370 HEDRIAWLRKLIAWQEEMADSGEM---------LDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCI 440 (743)
T ss_pred hHHHHHHHHHHHHHHhccCCHHHH---------HHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhce
Confidence 467899999999999998776666 489999999999999999999999999999999999999 88877
Q ss_pred -EEECCEEeCCCccCCCCCEEEEeC
Q 003224 815 -VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 815 -~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
|+|||++|||+|+|+|||+|||+|
T Consensus 441 gAkvng~~v~l~~~L~~GD~VeIit 465 (743)
T PRK10872 441 GAKIGGRIVPFTYQLQMGDQIEIIT 465 (743)
T ss_pred EEEECCEECCCCcCCCCCCEEEEEe
Confidence 699999999999999999999997
No 13
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=99.87 E-value=1.1e-22 Score=241.13 Aligned_cols=91 Identities=31% Similarity=0.459 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCCeEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003224 739 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 814 (838)
Q Consensus 739 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~-- 814 (838)
+.++.|||+|++||++..|+.+| ++.+|.|+|+++||||||+|+++.||.||||+||||+|| +|++|
T Consensus 327 ~~~~~wl~~~~~~~~~~~~~~~~---------~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~ 397 (683)
T TIGR00691 327 IDDMRWLNYLVEWQQESANFFEF---------IENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTG 397 (683)
T ss_pred HHHHHHHHHHHHHHhhcccchhH---------HHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeE
Confidence 56789999999999987765554 699999999999999999999999999999999999999 88887
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003224 815 VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 815 ~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
|+|||++|||+|+|+|||+|||+|
T Consensus 398 a~vng~~v~l~~~l~~gd~vei~t 421 (683)
T TIGR00691 398 AKVNGKIVPLDKELENGDVVEIIT 421 (683)
T ss_pred EEECCEECCCCccCCCCCEEEEEe
Confidence 599999999999999999999997
No 14
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.49 E-value=1.6e-14 Score=121.55 Aligned_cols=56 Identities=41% Similarity=0.585 Sum_probs=51.3
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003224 783 VIVCWPNGEIMRLRSGSTAADAAMKVG--LEGK--LVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 783 v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
|.||||+|++.+||.|+||.||||.|| ++.+ .|+|||+.|+|+|+|++||+|||+|
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 579999999999999999999999999 6664 4799999999999999999999997
No 15
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.91 E-value=1.1e-09 Score=96.75 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=42.8
Q ss_pred CCeEeCCCCCCHHHHHHHhC--CCCce-----EEECCEEeCCCccCCCCCEEEEeC
Q 003224 790 GEIMRLRSGSTAADAAMKVG--LEGKL-----VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 790 G~i~~Lp~GsT~~DfAy~ih--v~~~~-----~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
++.+.||+|+|+.||||.|| +++.+ ++ |||.|+++|+|+|||+|+|+|
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 57788999999999999999 66652 36 999999999999999999997
No 16
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.79 E-value=6.6e-09 Score=91.71 Aligned_cols=49 Identities=35% Similarity=0.358 Sum_probs=42.2
Q ss_pred CCeEeCCCCCCHHHHHHHhC--CCC--ceEE-------ECCEEeCCCccCCCCCEEEEeC
Q 003224 790 GEIMRLRSGSTAADAAMKVG--LEG--KLVL-------VNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 790 G~i~~Lp~GsT~~DfAy~ih--v~~--~~~~-------VNg~lvpl~~~L~~GD~VeI~t 838 (838)
.+.+.||.|||+.|||++|| ++. +.++ +|||.|+++++|+|||+|||.+
T Consensus 16 ~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 16 DEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 46789999999999999999 444 3344 5999999999999999999986
No 17
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.73 E-value=2.9e-08 Score=81.77 Aligned_cols=56 Identities=45% Similarity=0.568 Sum_probs=49.9
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003224 783 VIVCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 783 v~VftP~G~i~~Lp~GsT~~DfAy~ihv~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+|||+|+|..+.+|.|.|+.|++..++.+ . ..+++||++++++++|++||.||++|
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 58999999999999999999999888733 2 33699999999999999999999986
No 18
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.30 E-value=2e-07 Score=78.66 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=43.6
Q ss_pred cccccccc---CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003224 576 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 576 dvftpkg~---lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~t 631 (838)
.+|+|.|+ +|.|+|+.++ +|.+|++|+| ||+ +|+|+++|++||+|+|+|
T Consensus 2 ~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~V-----ng~--~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 2 RVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKV-----NGQ--LVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEE-----TTE--EEETTSBB-SSEEEEEEE
T ss_pred EEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEE-----cCE--ECCCCCCcCCCCEEEEEC
Confidence 36889994 8999999876 7899999999 999 999999999999999987
No 19
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.14 E-value=6.5e-06 Score=66.00 Aligned_cols=54 Identities=39% Similarity=0.499 Sum_probs=47.2
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCC--CC--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003224 785 VCWPNGEIMRLRSGSTAADAAMKVGL--EG--KLVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 785 VftP~G~i~~Lp~GsT~~DfAy~ihv--~~--~~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+..|+|+.+.+|.|+|+.|++-.++. .. ..++|||++++|+++|.+||.||++|
T Consensus 3 ~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 3 IFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 56788999999999999999998873 22 33699999999999999999999986
No 20
>PRK01777 hypothetical protein; Validated
Probab=97.98 E-value=1.7e-05 Score=73.25 Aligned_cols=56 Identities=30% Similarity=0.369 Sum_probs=45.2
Q ss_pred CeEEEEcCCC---CeEeCCCCCCHHHHHHHhCCCCc---------eEEECCEEeCCCccCCCCCEEEEe
Q 003224 781 EVVIVCWPNG---EIMRLRSGSTAADAAMKVGLEGK---------LVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 781 ~~v~VftP~G---~i~~Lp~GsT~~DfAy~ihv~~~---------~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+++|. +|+- .-+++|.|+|+.|+.-+.|+... .+-|||+.|.++++|++||+|||.
T Consensus 7 ~V~ya-~~~~~~~~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIy 74 (95)
T PRK01777 7 EVVYA-LPERQYLQRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIY 74 (95)
T ss_pred EEEEE-CCCceEEEEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEe
Confidence 34444 5543 35689999999999999994332 478999999999999999999995
No 21
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.97 E-value=1.6e-05 Score=70.52 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=40.9
Q ss_pred CeEeCCCCCCHHHHHHHhC--C--CCceEEECC-EEeCCCccCCCCCEEEEeC
Q 003224 791 EIMRLRSGSTAADAAMKVG--L--EGKLVLVNG-QLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 791 ~i~~Lp~GsT~~DfAy~ih--v--~~~~~~VNg-~lvpl~~~L~~GD~VeI~t 838 (838)
+-+-||.|+|+.|||+.|| + +-+.|.|-| |.|..+|+|++||+|+|+|
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 4567799999999999999 3 335577776 9999999999999999986
No 22
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.95 E-value=6.1e-06 Score=93.56 Aligned_cols=46 Identities=30% Similarity=0.414 Sum_probs=41.2
Q ss_pred eEeCCCCCCHHHHHHHhC--CCCce-----EEECCEEeCCCccCCCCCEEEEeC
Q 003224 792 IMRLRSGSTAADAAMKVG--LEGKL-----VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ih--v~~~~-----~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
.+.||.|||+.||||.|| ++..+ ++ ++|.|+++|+|+|||+|+|+|
T Consensus 342 ~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~-~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 342 AFLLPKGSTARDLAYKIHTDIGEGFLYAIDAR-TKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred eEEECCCCCHHHHHHHHHHHHHhhceehhccc-CCcccCCCcEecCCCEEEEEe
Confidence 899999999999999999 55543 35 899999999999999999986
No 23
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.82 E-value=4.8e-05 Score=77.65 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=54.5
Q ss_pred hcCCccccCc--chhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcc---cccccC--------------CHHHHHHHh
Q 003224 115 HHGQFRKTGD--PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV---VDDACE--------------SLGSIEEEF 175 (838)
Q Consensus 115 H~gQ~RksGe--PYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDv---VEDT~~--------------T~eeI~~~F 175 (838)
+.|+...+|+ ||+.|++.+|.+....+. |.+.|+||||||+ ++|+.. ..+.|+..|
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Ga-----d~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F 87 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGA-----DDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELF 87 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHc
Confidence 4455556787 589999999987655443 6799999999998 776532 246788889
Q ss_pred cHHHHHHHHHhhhhh
Q 003224 176 GDEVAKLVAGVSRLS 190 (838)
Q Consensus 176 G~eVA~LV~gVTKl~ 190 (838)
|++|+.+|..-..-+
T Consensus 88 ~~~V~~lV~~Hv~aK 102 (179)
T TIGR03276 88 SPSVTEPIRLHVQAK 102 (179)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999877643
No 24
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.82 E-value=4.2e-05 Score=65.16 Aligned_cols=53 Identities=38% Similarity=0.549 Sum_probs=47.0
Q ss_pred EcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003224 786 CWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 838 (838)
Q Consensus 786 ftP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 838 (838)
++=||+.+++|.|.|..|+.-+.++.... +-|||.++| .++.|++||+|||++
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAREGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHhcCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEE
Confidence 45589999999999999999999966554 589999999 999999999999974
No 25
>PRK06437 hypothetical protein; Provisional
Probab=97.57 E-value=0.00016 Score=62.59 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=44.9
Q ss_pred cCCC---CeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003224 787 WPNG---EIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 787 tP~G---~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+=+| +-+++|.|.|..|+.-.+|+.... +.|||++||.++.|++||.|||++
T Consensus 6 ~v~g~~~~~~~i~~~~tv~dLL~~Lgi~~~~vaV~vNg~iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 6 RVKGHINKTIEIDHELTVNDIIKDLGLDEEEYVVIVNGSPVLEDHNVKKEDDVLILE 62 (67)
T ss_pred EecCCcceEEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCceEcCCCCEEEEEe
Confidence 3357 669999999999999999965443 589999999999999999999974
No 26
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=97.56 E-value=0.0002 Score=57.74 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=45.6
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCC--CCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003224 785 VCWPNGEIMRLRSGSTAADAAMKVGL--EGK--LVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 785 VftP~G~i~~Lp~GsT~~DfAy~ihv--~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+-.|+|....+|.|+|+.|+++.++. ... .++|||++++|+++|.+|+.||.++
T Consensus 3 i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 3 ITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEe
Confidence 34477999999999999999999863 222 3599999999999999999999875
No 27
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=97.55 E-value=0.00019 Score=60.95 Aligned_cols=52 Identities=31% Similarity=0.397 Sum_probs=45.3
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce-EEECCEEeCC----CccCCCCCEEEEeC
Q 003224 787 WPNGEIMRLRSGSTAADAAMKVGLEGKL-VLVNGQLVLP----NTELKDGDIVEVRV 838 (838)
Q Consensus 787 tP~G~i~~Lp~GsT~~DfAy~ihv~~~~-~~VNg~lvpl----~~~L~~GD~VeI~t 838 (838)
+=||+.+++|.|+|..|+.-++++.... +-|||++||- ++.|++||.|||++
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 4 QLNQQTLSLPDGATVADALAAYGARPPFAVAVNGDFVARTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred EECCEEEECCCCCcHHHHHHhhCCCCCeEEEECCEEcCchhcccccCCCCCEEEEEe
Confidence 4489999999999999999888865444 5999999997 78999999999985
No 28
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=97.51 E-value=0.00017 Score=61.59 Aligned_cols=51 Identities=35% Similarity=0.539 Sum_probs=45.2
Q ss_pred CCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003224 788 PNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 838 (838)
Q Consensus 788 P~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 838 (838)
=||+.+++|.|.|..|+--.+++.... +.|||++||.+ +.|++||.|+|++
T Consensus 4 iNg~~~~~~~~~tv~~ll~~l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 4 VNGEPREVEEGATLAELLEELGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred ECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 379999999999999999999855433 58999999999 9999999999974
No 29
>PRK07440 hypothetical protein; Provisional
Probab=97.50 E-value=0.00022 Score=62.28 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=48.4
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003224 785 VCWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 838 (838)
Q Consensus 785 VftP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 838 (838)
-++=||+.+++|.|.|..|+--.+++..+. +-+||.+|| .++.|++||.|||++
T Consensus 6 ~i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 6 TLQVNGETRTCSSGTSLPDLLQQLGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred EEEECCEEEEcCCCCCHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 556699999999999999999999876654 599999999 999999999999985
No 30
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=97.42 E-value=0.00029 Score=61.46 Aligned_cols=50 Identities=40% Similarity=0.579 Sum_probs=46.0
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003224 789 NGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 838 (838)
Q Consensus 789 ~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 838 (838)
+|+-++++.+.|..|+--.+++.... +.|||.+|| .++.|++||.|||++
T Consensus 8 ng~~~e~~~~~tv~dLL~~l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 8 NGKEVEIAEGTTVADLLAQLGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred CCEEEEcCCCCcHHHHHHHhCCCCceEEEEECCEEccchhhhhccccCCCEEEEEE
Confidence 59999999999999999999977665 599999999 999999999999974
No 31
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=97.37 E-value=0.00031 Score=60.75 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=46.0
Q ss_pred cCCCCeEeCCCC-CCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003224 787 WPNGEIMRLRSG-STAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 838 (838)
Q Consensus 787 tP~G~i~~Lp~G-sT~~DfAy~ihv~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 838 (838)
+=||+.+++|.| +|..|+--.+++..+. +-|||.+||-+ +.|++||.|||++
T Consensus 4 ~vNG~~~~~~~~~~tv~~lL~~l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 4 KINGNQIEVPESVKTVAELLTHLELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EECCEEEEcCCCcccHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 348999999999 7999999999976554 59999999999 9999999999985
No 32
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=97.37 E-value=0.00042 Score=60.30 Aligned_cols=47 Identities=36% Similarity=0.501 Sum_probs=42.0
Q ss_pred eEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003224 792 IMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
.+++|.|+|..|+.-.+++...+ +.|||++|+.++.|++||.|||++
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~~~~v~v~vNg~iv~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFNTESAIAKVNGKVALEDDPVKDGDYVEVIP 65 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCCcCcCCCCEEEEEc
Confidence 77889999999999999965544 599999999999999999999974
No 33
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=97.29 E-value=0.00058 Score=58.17 Aligned_cols=50 Identities=38% Similarity=0.555 Sum_probs=43.6
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003224 789 NGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 838 (838)
Q Consensus 789 ~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 838 (838)
||+.+++|.|.|..|+--.+++.... +-|||++|| .++.|++||.|||++
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 89999999999999999999865544 599999997 447999999999984
No 34
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=97.15 E-value=0.001 Score=57.20 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=45.2
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003224 787 WPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 838 (838)
Q Consensus 787 tP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 838 (838)
+=||+.+++|.|.|..|+--.++....+ +-|||++|| -++.|++||.|||++
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 4 LFNDQPMQCAAGQTVHELLEQLNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEEE
Confidence 4489999999999999999888865543 599999999 778999999999985
No 35
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.03 E-value=0.00034 Score=62.15 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=35.7
Q ss_pred CCCCCce-------eeecCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003224 584 LKMGHPV-------IRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 584 lp~G~tv-------l~~vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~t 631 (838)
||.|+|+ |+.+|++|+.|++ .. ||+ .|+++|.|++||+|+|+|
T Consensus 27 l~~GaTv~D~A~~IHtdi~~~f~~Ai~--~k-~~~--~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 27 LPKGSTARDLAYAIHTDIGDGFLHAID--AR-TGR--RVGEDYELKHRDVIKIVS 76 (76)
T ss_pred ECCCCCHHHHHHHHHHHHHhcceeeEE--ee-CCE--EeCCCcEecCCCEEEEeC
Confidence 5777777 5559999998865 22 788 899999999999999986
No 36
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=96.90 E-value=0.00082 Score=60.93 Aligned_cols=55 Identities=36% Similarity=0.489 Sum_probs=35.0
Q ss_pred eEEEEcCCCC---eEeCCCCCCHHHHHHHhC---------CCCceEEECCEEeCCCccCCCCCEEEEe
Q 003224 782 VVIVCWPNGE---IMRLRSGSTAADAAMKVG---------LEGKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 782 ~v~VftP~G~---i~~Lp~GsT~~DfAy~ih---------v~~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
++|. +|+.. -+.||.|+|+.|+.-+-| +....+=|=||.|++++.|++||+|||-
T Consensus 5 V~yA-~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~L~~GDRVEIY 71 (84)
T PF03658_consen 5 VAYA-LPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTVLRDGDRVEIY 71 (84)
T ss_dssp EEEE-ETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B--TT-EEEEE
T ss_pred EEEE-CCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCcCCCCCEEEEe
Confidence 4443 55544 368999999999988876 2334467889999999999999999994
No 37
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=96.87 E-value=0.0019 Score=58.16 Aligned_cols=46 Identities=37% Similarity=0.478 Sum_probs=41.7
Q ss_pred eEeCCCCCCHHHHHHHhCCCCc---eEEECCEEeCCCccCCCCCEEEEe
Q 003224 792 IMRLRSGSTAADAAMKVGLEGK---LVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ihv~~~---~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
.+.++.|+|..|..=++|+.+. .+.|||+.|+++|.|++||.|.|.
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHTEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChHHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 4688999999999999998884 479999999999999999999984
No 38
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.87 E-value=0.0022 Score=54.81 Aligned_cols=50 Identities=32% Similarity=0.437 Sum_probs=43.0
Q ss_pred CCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003224 788 PNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 838 (838)
Q Consensus 788 P~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 838 (838)
=||+.+++ .++|..|+--.+++..+. +-|||++||- +++|++||.|||++
T Consensus 5 ~Ng~~~~~-~~~tl~~Ll~~l~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 5 VNGETLQT-EATTLALLLAELDYEGNWLATAVNGELVHKEARAQFVLHEGDRIEILS 60 (65)
T ss_pred ECCeEEEc-CcCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEE
Confidence 38999999 468999999888876554 5999999998 99999999999974
No 39
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.80 E-value=0.00048 Score=61.15 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCCCCceeee-------cCCceeEEEEE--EEccCCeeEEEecccccCCCCeEEEcC
Q 003224 584 LKMGHPVIRV-------EGSNLLAAVII--RVEKGGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 584 lp~G~tvl~~-------vG~~c~gAkV~--~v~~nGr~~lVpls~~L~~GD~VeI~t 631 (838)
||.|+||.++ ++.+|..|+|- ++..+|+ .|+++++|++||+|||.+
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq--~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQ--RVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCe--ECCCCCEecCCCEEEEeC
Confidence 7999999554 78999999863 3334788 799999999999999975
No 40
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=96.33 E-value=0.0065 Score=52.16 Aligned_cols=53 Identities=26% Similarity=0.264 Sum_probs=44.9
Q ss_pred EcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC---CccCCCCCEEEEeC
Q 003224 786 CWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP---NTELKDGDIVEVRV 838 (838)
Q Consensus 786 ftP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl---~~~L~~GD~VeI~t 838 (838)
+|=||+-+++|.+.|..|+--.+++..+. +-+||.+||- ++.|++||.|||++
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~l~~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~ 60 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDSLGFPEKGIAVAVDWSVLPRSDWATKLRDGARLEVVT 60 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHHcCCCCCcEEEEECCcCcChhHhhhhcCCCCEEEEEe
Confidence 34589999999999999999999966544 5999999884 45799999999985
No 41
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=96.28 E-value=0.01 Score=53.85 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=48.9
Q ss_pred eEEEEcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003224 782 VVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 838 (838)
Q Consensus 782 ~v~VftP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 838 (838)
...-++=||+.++++.|.|..|+--..++..+. +-|||.+||- ++.|++||.|||++
T Consensus 17 ~~m~I~VNG~~~~~~~~~tl~~LL~~l~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 17 VLITISINDQSIQVDISSSLAQIIAQLSLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ceEEEEECCeEEEcCCCCcHHHHHHHcCCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEE
Confidence 344566799999999999999999888877764 4999999995 68999999999985
No 42
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=95.93 E-value=0.014 Score=50.89 Aligned_cols=48 Identities=31% Similarity=0.417 Sum_probs=39.6
Q ss_pred CeEeCCCCCCHHHHHHHhC--CC-------Cc-eEEECCEEeCCCccCCCCCEEEEeC
Q 003224 791 EIMRLRSGSTAADAAMKVG--LE-------GK-LVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 791 ~i~~Lp~GsT~~DfAy~ih--v~-------~~-~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
..+++|.|+|..|+.-.+. .+ .. .+.|||++|+.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeC
Confidence 4568899999999988875 11 12 3799999999999999999999973
No 43
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.89 E-value=0.017 Score=51.27 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=40.5
Q ss_pred CCCeEeCCCCCCHHHHHHHhCC---------CCceEEECCEEeCCCccCCCCCEEEEe
Q 003224 789 NGEIMRLRSGSTAADAAMKVGL---------EGKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 789 ~G~i~~Lp~GsT~~DfAy~ihv---------~~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+++.+++|.|+|..|..-.+.. ....+-|||+.++.+++|++||.|+|+
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~ 76 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAII 76 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEe
Confidence 3477899999999998887741 112368999999999999999999997
No 44
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=95.40 E-value=0.011 Score=48.43 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=38.7
Q ss_pred ccccccc---CCCCCceeeec-------CCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003224 577 LFQKYSS---LKMGHPVIRVE-------GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 577 vftpkg~---lp~G~tvl~~v-------G~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~t 631 (838)
+|.|.|. +|.|.|+.+++ ...++++++ ||+ ++++++.|+.||.|++++
T Consensus 3 ~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~v-----ng~--~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 3 VFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKV-----NGK--LVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEE-----CCE--ECCCCCCCCCCCEEEEEC
Confidence 6888884 78998886642 235677777 999 999999999999999975
No 45
>PTZ00258 GTP-binding protein; Provisional
Probab=95.10 E-value=0.032 Score=63.70 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=43.2
Q ss_pred eEEEEcC---CCCeEeCCCCCCHHHHHHHhC--CCC--ceEEE-----------------CC--EEeCCCccCCCCCEEE
Q 003224 782 VVIVCWP---NGEIMRLRSGSTAADAAMKVG--LEG--KLVLV-----------------NG--QLVLPNTELKDGDIVE 835 (838)
Q Consensus 782 ~v~VftP---~G~i~~Lp~GsT~~DfAy~ih--v~~--~~~~V-----------------Ng--~lvpl~~~L~~GD~Ve 835 (838)
-+-+||- .-+-..+|+|||+.|+|..|| ++- ..|.| -| |++--+|.|+|||||+
T Consensus 304 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~ 383 (390)
T PTZ00258 304 LIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIF 383 (390)
T ss_pred CEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEE
Confidence 3446662 236789999999999999999 332 23455 26 8999999999999999
Q ss_pred Ee
Q 003224 836 VR 837 (838)
Q Consensus 836 I~ 837 (838)
++
T Consensus 384 f~ 385 (390)
T PTZ00258 384 FK 385 (390)
T ss_pred EE
Confidence 86
No 46
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=95.08 E-value=0.032 Score=48.25 Aligned_cols=47 Identities=36% Similarity=0.473 Sum_probs=40.9
Q ss_pred CeEeCCCCCCHHHHHHHhC--C------CCceEEECCEEeCC---CccCCCCCEEEEe
Q 003224 791 EIMRLRSGSTAADAAMKVG--L------EGKLVLVNGQLVLP---NTELKDGDIVEVR 837 (838)
Q Consensus 791 ~i~~Lp~GsT~~DfAy~ih--v------~~~~~~VNg~lvpl---~~~L~~GD~VeI~ 837 (838)
..+.+|.|+|..|+--++. . ..-.+.|||++++. +++|++||.|.|+
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAIL 71 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEE
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEE
Confidence 5678899999999999987 3 23347999999999 9999999999997
No 47
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.82 E-value=0.047 Score=50.53 Aligned_cols=54 Identities=33% Similarity=0.412 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCCCeEeCCCCCCHHHHHHHhCCC-------Cc-e-EEECCEEeCCCccCCCCCEEEEe
Q 003224 779 PGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-------GK-L-VLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 779 ~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ihv~-------~~-~-~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+++..|+++ +.|+.|+|+.|++..=|+- -+ + +=|=|+.|-++.+|++||+|||.
T Consensus 12 lPerq~l~~-----v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIy 74 (99)
T COG2914 12 LPERQYLCR-----VQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIY 74 (99)
T ss_pred cCCcceEEE-----EEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEe
Confidence 445555543 7899999999999997722 11 1 46779999999999999999994
No 48
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=94.80 E-value=0.019 Score=63.70 Aligned_cols=45 Identities=42% Similarity=0.484 Sum_probs=38.9
Q ss_pred EeCCCCCCHHHHHHHhC---C--------CCceEEECCEEeCCCccCCCCCEEEEe
Q 003224 793 MRLRSGSTAADAAMKVG---L--------EGKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 793 ~~Lp~GsT~~DfAy~ih---v--------~~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+-|++|||+.|++.+|| + =++-++-+||.|-++|.|.|||+|+|.
T Consensus 308 lIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 308 LILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIH 363 (365)
T ss_pred eEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEe
Confidence 55789999999999999 2 224468899999999999999999996
No 49
>PRK14707 hypothetical protein; Provisional
Probab=94.66 E-value=0.081 Score=69.36 Aligned_cols=114 Identities=22% Similarity=0.352 Sum_probs=87.7
Q ss_pred CCCCCceEEEEEeecChhHHHHHHHh----cCCCC----CcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CC
Q 003224 413 GYIPGMEVTLSSRLKSLYSIFSKMRR----KDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WI 483 (838)
Q Consensus 413 ~~~~gi~~~I~gR~K~~ySI~~Km~R----k~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~-~~ 483 (838)
|...|+ ..|+|+..|+.+|+.. ++.++ ..|.|.+-.-||+++. .|+..+..+++.+... |+
T Consensus 2302 G~L~GL----e~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~------~Fva~~r~Il~aL~~qGy~ 2371 (2710)
T PRK14707 2302 GQLAGT----QHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQ------GFTAGLRAVLAALDDQGHA 2371 (2710)
T ss_pred Ccccch----HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCch------hHHHHHHHHHHHHHHcCCe
Confidence 344555 4599999999999973 45666 4699988777888753 4899999999888754 55
Q ss_pred CccccccccccCCCCCCCceeEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhccccc
Q 003224 484 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 542 (838)
Q Consensus 484 pi~~r~kDYIa~PK~NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 542 (838)
-+ +++++-. .+.++|..+++++..|+|..+|||.=|..=-..-+. -|=.||+.
T Consensus 2372 ~v--kvkN~F~-~~~~~YkGINvtL~~pdG~~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2372 RV--KLTNQFT-EYSPSFKAINLTLRSPEGALWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred EE--EEeeccc-CCCCCccceEEEEEcCCCcEEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 43 5777763 346899999999999999999999999876665553 37789974
No 50
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=93.83 E-value=0.14 Score=45.23 Aligned_cols=47 Identities=26% Similarity=0.366 Sum_probs=38.3
Q ss_pred CeEeCCCC-CCHHHHHHHhC--C------CCc-eEEECCEEeCCCccCCCCCEEEEe
Q 003224 791 EIMRLRSG-STAADAAMKVG--L------EGK-LVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 791 ~i~~Lp~G-sT~~DfAy~ih--v------~~~-~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+.+++|.+ +|..|+.-.+. . ... .+-|||++++.+++|++||.|.|+
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEe
Confidence 46788876 99999888874 1 122 379999999999999999999986
No 51
>PLN02908 threonyl-tRNA synthetase
Probab=93.37 E-value=0.42 Score=58.47 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=62.1
Q ss_pred CCccccchhhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCCeEEEEcCCCCeEeCCC-CCCHHHHHHHhC
Q 003224 731 PTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS-GSTAADAAMKVG 809 (838)
Q Consensus 731 ~~~~~~~~~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~i~~Lp~-GsT~~DfAy~ih 809 (838)
-.+....+.+++....++-+=|++. + .. .-.+.+-|--|+|.+...|. |+||.|.|..+.
T Consensus 19 ~~~~~~~~~~r~~~f~~~~~~~~~~-----~----------~~----~~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~ 79 (686)
T PLN02908 19 EEYLSAVIKKRIELFEKIQARQLAR-----L----------ES----AGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEIS 79 (686)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHH-----h----------hh----ccCCceEEEeCCCceEeecCCCCCHHHHHHHhC
Confidence 3344556677777777773333221 1 11 12234556669999999995 599999999997
Q ss_pred CC--Cc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003224 810 LE--GK--LVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 810 v~--~~--~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
-+ .. .++|||++++|+++|.....||++|
T Consensus 80 ~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 112 (686)
T PLN02908 80 KGLANSALIAQVDGVLWDMTRPLEGDCKLKLFK 112 (686)
T ss_pred ccchhhcEEEEECCEEeecCccccCCCeeEEec
Confidence 32 33 3699999999999999888898874
No 52
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=92.71 E-value=0.21 Score=60.43 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=47.7
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003224 783 VIVCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 783 v~VftP~G~i~~Lp~GsT~~DfAy~ihv~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+.|.-|+|.+...|.|.|+.|.|..+.-+ . -.++|||++++|++++..+..||++|
T Consensus 6 i~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~ 65 (639)
T PRK12444 6 IEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIIT 65 (639)
T ss_pred eEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEec
Confidence 56777889999999999999999988632 2 23699999999999999999999875
No 53
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=91.95 E-value=0.12 Score=41.00 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=33.1
Q ss_pred CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003224 584 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 584 lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~t 631 (838)
+|.|.|+.++ .....++++| ||+ ++++++.|..||.|++++
T Consensus 13 ~~~g~t~~~~~~~~~~~~~~~~~~~~v-----n~~--~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 13 LPKGATAMDFALKIHTDLGKGFIGALV-----NGQ--LVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred cCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--ECCCCcCcCCCCEEEEeC
Confidence 6778877664 2345677888 999 999999999999999875
No 54
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=90.10 E-value=1.1 Score=47.93 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=41.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCC----CCCChhhHHHHhhhhcccc
Q 003224 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPS----SGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 93 ~~~y~~~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~----~g~~D~dtI~AALLHDvVE 162 (838)
+.+..+.+...+++|.+|+.+... ..-+.|.+.|......+... .+.+.....+||||||+..
T Consensus 30 ~~~~~iPdt~l~~~a~~~~~~~l~-------~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~ 96 (228)
T TIGR03401 30 VEDTPLPDTPLVKFAQEYAKARLP-------PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGT 96 (228)
T ss_pred cCCCCCCChHHHHHHHHHHHhhCC-------HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhcc
Confidence 344456788899999999987754 24478999987544322210 1223345668999999865
No 55
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=89.34 E-value=0.74 Score=41.28 Aligned_cols=45 Identities=33% Similarity=0.445 Sum_probs=35.6
Q ss_pred eEeCCCCCCHHHHHHHhC--CC---------------CceEEECCEEeCCCc--cCCCCCEEEEe
Q 003224 792 IMRLRSGSTAADAAMKVG--LE---------------GKLVLVNGQLVLPNT--ELKDGDIVEVR 837 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ih--v~---------------~~~~~VNg~lvpl~~--~L~~GD~VeI~ 837 (838)
.+++| |+|..|+.-++. .+ +..+.|||+.+..+. +|++||.|.|+
T Consensus 19 ~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~ 82 (88)
T TIGR01687 19 EIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIF 82 (88)
T ss_pred EEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEe
Confidence 45677 999999888773 11 133799999998887 99999999986
No 56
>PRK01777 hypothetical protein; Validated
Probab=88.97 E-value=0.29 Score=45.51 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=31.5
Q ss_pred cCCCCCceeee---cC-------CceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 003224 583 SLKMGHPVIRV---EG-------SNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 633 (838)
Q Consensus 583 ~lp~G~tvl~~---vG-------~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~ 633 (838)
++|.|.|+.+. .| -.+.. .++.| ||+ .|.+++.|+.||.|||...-
T Consensus 22 ~vp~GtTv~dal~~sgi~~~~pei~~~~-~~vgI--~Gk--~v~~d~~L~dGDRVeIyrPL 77 (95)
T PRK01777 22 TLQEGATVEEAIRASGLLELRTDIDLAK-NKVGI--YSR--PAKLTDVLRDGDRVEIYRPL 77 (95)
T ss_pred EcCCCCcHHHHHHHcCCCccCccccccc-ceEEE--eCe--ECCCCCcCCCCCEEEEecCC
Confidence 47999988543 11 11111 12344 799 89999999999999997764
No 57
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=88.87 E-value=0.56 Score=42.46 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHcCCCCC--CChhhHHHHhhhhcccccc
Q 003224 127 LTHCIHTGRILAMLIPSSG--KRAVDTVVAGILHDVVDDA 164 (838)
Q Consensus 127 I~Hpl~VA~ILA~l~~~~g--~~D~dtI~AALLHDvVEDT 164 (838)
+.|.+.|+.+...+....+ ..-.-..+||||||+-.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 6799999988766542111 0111267999999986644
No 58
>PRK14707 hypothetical protein; Provisional
Probab=88.69 E-value=0.85 Score=60.55 Aligned_cols=103 Identities=24% Similarity=0.333 Sum_probs=77.6
Q ss_pred cChhHHHHHHHhc---CCCC----CcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCCccccccccccCCCC
Q 003224 427 KSLYSIFSKMRRK---DVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDYIVNPKP 498 (838)
Q Consensus 427 K~~ySI~~Km~Rk---~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~-~~pi~~r~kDYIa~PK~ 498 (838)
|++.||.+|+.+. |++. ..|.|.+-.=||.+. +.|+...+.+.+.+... |+.+ ++|++-..| .
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~------e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d 2614 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPS------EGFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-D 2614 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCc------chHHHHHHHHHHHHHhcCCeEE--EeeccccCC-C
Confidence 9999999999864 4444 368896666666653 35888899998887754 6654 788888654 4
Q ss_pred CCCceeEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhcccc
Q 003224 499 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 541 (838)
Q Consensus 499 NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~ 541 (838)
+.|..+-+++..++|..+|||.=|..=-. +..+ .|-.|+.
T Consensus 2615 ~tY~GvN~~~r~~~g~~FEIQFHT~~Sf~-~K~~--tH~lYek 2654 (2710)
T PRK14707 2615 GTYRGINASFTDAEGYAFEVQFHTAESFN-AKAQ--THLSYKR 2654 (2710)
T ss_pred CcccceeeeEEcCCCCeEEEEeccHHHHH-HHHH--hHHHHHh
Confidence 78999999999999999999999975443 3334 3778975
No 59
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=88.65 E-value=0.4 Score=40.21 Aligned_cols=27 Identities=41% Similarity=0.641 Sum_probs=23.7
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEE
Q 003224 810 LEGKLVLVNGQLV-LPNTELKDGDIVEV 836 (838)
Q Consensus 810 v~~~~~~VNg~lv-pl~~~L~~GD~VeI 836 (838)
+....++|||+.+ ..++.|+.||.|+|
T Consensus 31 i~~G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 31 LQENEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HHcCCEEECCEEccCCCCCCCCCCEEEe
Confidence 4556689999999 88999999999987
No 60
>PRK09602 translation-associated GTPase; Reviewed
Probab=88.64 E-value=0.15 Score=58.37 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=36.7
Q ss_pred CCCCCce-------eeecCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 003224 584 LKMGHPV-------IRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 633 (838)
Q Consensus 584 lp~G~tv-------l~~vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~ 633 (838)
||.|+|+ |+.+|.+|+.|.. +. +++ .|+.+|.|+.||+|+|++++
T Consensus 345 l~~g~t~~d~A~~IH~d~~~~fi~A~~--~~-~~~--~~g~~~~l~dgDiv~i~~~~ 396 (396)
T PRK09602 345 LPKGSTARDLAYKIHTDIGEGFLYAID--AR-TKR--RIGEDYELKDGDVIKIVSTA 396 (396)
T ss_pred ECCCCCHHHHHHHHHHHHHhhceehhc--cc-CCc--ccCCCcEecCCCEEEEEeCC
Confidence 6788877 5568999988875 22 577 89999999999999999864
No 61
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=88.48 E-value=1.9 Score=48.78 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=61.0
Q ss_pred hhhhhhHHHHHHHHHhcccc-ccccccCCC-CccCCCCceeeeceeccCCCCCCHHHHHHHHHHHHHhhcCCccccCcch
Q 003224 49 TSAITHVAVTAVAIASGACL-STKVDFLWP-KLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPY 126 (838)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~-~~~~df~~~-~~~~~~~~~~~~g~~~~~y~~~~~~~l~kA~~fA~~aH~gQ~RksGePY 126 (838)
-.+=||--|.|+||-|---. ..-++.-|+ +..-.|.. .|-.+. ..+...+++.+-.+.+. .+..
T Consensus 123 v~~qphsevaala~fld~~~~g~~~~~~~~~~~~v~P~~---~gk~v~-----~ip~~ee~l~Ll~k~~~------~e~l 188 (339)
T PRK12703 123 VTNQPISEVSALAIFLDRYFDGKELEKSFEGKINVVPME---RGKLVK-----IIPDEDQCLDLLKKYGA------SDLL 188 (339)
T ss_pred eCCCChHHHHHHHHHHHHhccchhhhhccCCcEEEeecc---cccccc-----CCCCHHHHHHHHHHcCC------ChHH
Confidence 34557888888888762211 011111111 22222221 122222 12234566666544432 2335
Q ss_pred hhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccC-------CHHHHHH-HhcHHHHHHHHHhh
Q 003224 127 LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE-------SLGSIEE-EFGDEVAKLVAGVS 187 (838)
Q Consensus 127 I~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~-------T~eeI~~-~FG~eVA~LV~gVT 187 (838)
+.|.+.|+.....+....+......++||||||+-..... ..+-|++ .|.++++.+|..-.
T Consensus 189 ~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~ 257 (339)
T PRK12703 189 IRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHI 257 (339)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 7899998876543322222223456678999999653321 1222332 24567777775544
No 62
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=88.21 E-value=1.4 Score=39.18 Aligned_cols=41 Identities=27% Similarity=0.173 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHhC----------C-CCceEEECCEEeCCCccCCCCCEEEEe
Q 003224 797 SGSTAADAAMKVG----------L-EGKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 797 ~GsT~~DfAy~ih----------v-~~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
.|+|+.|+--.+- . +.-.+-||++++.++|+|++||.|.|+
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~ 75 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEe
Confidence 4789888766552 1 222369999999999999999999886
No 63
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=87.15 E-value=0.34 Score=38.63 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.0
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEE
Q 003224 810 LEGKLVLVNGQLVL-PNTELKDGDIV 834 (838)
Q Consensus 810 v~~~~~~VNg~lvp-l~~~L~~GD~V 834 (838)
+..+.++|||+.|. ++++++.||+|
T Consensus 23 I~~g~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 23 IKQGRVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp HHTTTEEETTEEESSTTSBESTTEEE
T ss_pred cCCCEEEECCEEEcCCCCCCCCcCCC
Confidence 44466899999999 99999999987
No 64
>PRK09169 hypothetical protein; Validated
Probab=86.97 E-value=1.8 Score=58.39 Aligned_cols=109 Identities=24% Similarity=0.339 Sum_probs=81.0
Q ss_pred EEEeecChhHHHHHHH----hcCCCC----CcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCCcccccccc
Q 003224 422 LSSRLKSLYSIFSKMR----RKDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDY 492 (838)
Q Consensus 422 I~gR~K~~ySI~~Km~----Rk~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~-~~pi~~r~kDY 492 (838)
...|+|+..|+.+|+. ++++++ ..|.|.+-.-|++++ +.|+..+..+++.+... |.-+ +++++
T Consensus 1916 le~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~------~~Fva~~r~iv~~L~~~G~~~V--kv~N~ 1987 (2316)
T PRK09169 1916 LAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPP------QTFVAGYRRILGALDEQGHTRT--RVTNH 1987 (2316)
T ss_pred hHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCC------ccHHHHHHHHHHHHHhCCCeEE--EEEee
Confidence 3569999999999998 456665 468997666666654 25888999999988754 5544 45554
Q ss_pred ccCCCCCCCceeEEEE-EcCCCcEEEEEEechhhHHHHHhhhhhhhccccc
Q 003224 493 IVNPKPSGYQSLHTAV-QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 542 (838)
Q Consensus 493 Ia~PK~NGYqSLHt~V-~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 542 (838)
-..+ .++|..+|+++ ..++|..+|||.=|..=-..-+. . |-.||+.
T Consensus 1988 F~~~-~~~YkGVNv~l~~s~~g~~fEIQFHT~qSF~lK~r-~--H~lYkq~ 2034 (2316)
T PRK09169 1988 FKKR-GPAFKGINVTLDATGEGVRLEIQFHTPQTFDLKER-F--HDLYKQA 2034 (2316)
T ss_pred eccC-CCCccceEEeeecCCCCceEEEEecCHHHHHHHHH-h--HHHHHHH
Confidence 3322 49999999999 77899999999999876555553 3 7899964
No 65
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=86.92 E-value=0.52 Score=53.57 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=34.5
Q ss_pred CeEeCCCCCCHHHHHHHhC--CCCce--EEE-------------C----CE--EeCCCccCCCCCEEEEe
Q 003224 791 EIMRLRSGSTAADAAMKVG--LEGKL--VLV-------------N----GQ--LVLPNTELKDGDIVEVR 837 (838)
Q Consensus 791 ~i~~Lp~GsT~~DfAy~ih--v~~~~--~~V-------------N----g~--lvpl~~~L~~GD~VeI~ 837 (838)
+...+|+||||.|+|..|| ++-.. |.| + |+ +.-=+|.++|||||.|+
T Consensus 292 rawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~ 361 (364)
T PRK09601 292 RAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFR 361 (364)
T ss_pred EEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEE
Confidence 5678999999999999999 32221 221 1 22 33459999999999986
No 66
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=85.87 E-value=0.69 Score=39.34 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=30.9
Q ss_pred cCCCCCceeee---cC--CceeEEEEEEEccCCeeEEEe----cccccCCCCeEEEcCC
Q 003224 583 SLKMGHPVIRV---EG--SNLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRP 632 (838)
Q Consensus 583 ~lp~G~tvl~~---vG--~~c~gAkV~~v~~nGr~~lVp----ls~~L~~GD~VeI~ts 632 (838)
++|.|.|+.+. .| ...+...| ||. +|| .++.|+.||+|||++.
T Consensus 11 ~~~~~~tl~~lL~~l~~~~~~vav~v-----Ng~--iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 11 ELPDGESVAALLAREGLAGRRVAVEV-----NGE--IVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred EcCCCCCHHHHHHhcCCCCCeEEEEE-----CCe--EeCHHHcCcccCCCCCEEEEEEE
Confidence 36777777543 23 33444444 899 899 9999999999999763
No 67
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=85.01 E-value=2.7 Score=35.89 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=45.2
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCceEEECCEEeCCCccCCCCCEEEEe
Q 003224 789 NGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 789 ~G~i~~Lp~GsT~~DfAy~ihv~~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
||+-+....|+|.-++.-.+.-+.-.+-+||-..--+++|+.||.|-.+
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~~~DI~I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKPDADIVILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCCCCCEEEEcCcccCCccccCCCCEEEEE
Confidence 7889999999999999999988888899999999999999999998765
No 68
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=83.95 E-value=2 Score=39.85 Aligned_cols=41 Identities=29% Similarity=0.256 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHhC-----------C-C-----CceEEECCEEe----CCCccCCCCCEEEEe
Q 003224 797 SGSTAADAAMKVG-----------L-E-----GKLVLVNGQLV----LPNTELKDGDIVEVR 837 (838)
Q Consensus 797 ~GsT~~DfAy~ih-----------v-~-----~~~~~VNg~lv----pl~~~L~~GD~VeI~ 837 (838)
.|+|..|.--.+- . + .-.+.|||+-+ -++|+|++||.|.|+
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 6899999777661 1 1 12479999997 478999999999986
No 69
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=83.38 E-value=0.93 Score=36.19 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=33.1
Q ss_pred CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003224 584 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 584 lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~t 631 (838)
+|.|.++.++ .+...++|+| ||+ +++|++.+.+|+.|+.++
T Consensus 13 ~~~~~t~~~~~~~~~~~~~~~~v~~~v-----ng~--~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 13 FPKGTTPLDIAKSISPGLAKKAVAAKV-----NGE--LVDLSRPLEEDCELEIIT 60 (61)
T ss_pred eCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--EecCCcCcCCCCEEEEEe
Confidence 5677776653 3456788998 999 999999999999999875
No 70
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=83.25 E-value=0.81 Score=55.20 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=40.3
Q ss_pred cCCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003224 583 SLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 635 (838)
Q Consensus 583 ~lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~~p 635 (838)
.+|.|.|++++ .++.+++|+| ||+ +++|++.+.+++.||+++..++
T Consensus 13 ~~~~gtt~~dia~~~~~~~~~~~v~a~v-----ng~--l~dL~~~l~~d~~Vefi~~~~~ 65 (638)
T PRK00413 13 EFEAGVTVADVAASISPGLAKAAVAGKV-----NGE--LVDLSTPIEEDASLEIITAKDE 65 (638)
T ss_pred EeCCCCCHHHHHHHhhhhchhheEEEEE-----CCE--EeeCCccccCCCceeeeeccch
Confidence 37899888765 5789999999 999 9999999999999999987654
No 71
>smart00363 S4 S4 RNA-binding domain.
Probab=82.24 E-value=1.2 Score=35.28 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=22.8
Q ss_pred CceEEECCEEe-CCCccCCCCCEEEEe
Q 003224 812 GKLVLVNGQLV-LPNTELKDGDIVEVR 837 (838)
Q Consensus 812 ~~~~~VNg~lv-pl~~~L~~GD~VeI~ 837 (838)
++.++|||+.+ ..++.|+.||+|++.
T Consensus 25 ~g~i~vng~~~~~~~~~l~~gd~i~~~ 51 (60)
T smart00363 25 QGRVKVNGKKVTKPSYIVKPGDVISVR 51 (60)
T ss_pred cCCEEECCEEecCCCeEeCCCCEEEEc
Confidence 45689999999 999999999999873
No 72
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=80.87 E-value=1.3 Score=38.85 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=29.3
Q ss_pred CCCCCceeee---cCC--ceeEEEEEEEccCCeeEEEe----cccccCCCCeEEEcC
Q 003224 584 LKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRR 631 (838)
Q Consensus 584 lp~G~tvl~~---vG~--~c~gAkV~~v~~nGr~~lVp----ls~~L~~GD~VeI~t 631 (838)
++.+.|+.+. .|- +-+...| ||. +|| ..+.|++||.|||++
T Consensus 14 ~~~~~tv~dLL~~l~~~~~~vav~v-----Ng~--iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 14 IAEGTTVADLLAQLGLNPEGVAVAV-----NGE--IVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred cCCCCcHHHHHHHhCCCCceEEEEE-----CCE--EccchhhhhccccCCCEEEEEE
Confidence 4556666443 333 3444444 899 999 999999999999976
No 73
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=79.76 E-value=1.4 Score=37.54 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=20.1
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003224 609 GGRELLVAVS----FGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls----~~L~~GD~VeI~ts 632 (838)
||+ +||-+ +.|+.||.|+|++.
T Consensus 36 Ng~--~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 36 NGE--IVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCE--EcCHHHcCceecCCCCEEEEEEe
Confidence 899 99999 99999999999753
No 74
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=78.81 E-value=2.1 Score=40.43 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.4
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEe
Q 003224 812 GKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 812 ~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
..-|+|||+.+-+++.++.||+++|.
T Consensus 33 ~GrV~vNG~~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 33 GGRVKVNGQRAKPSKEVKVGDILTIR 58 (100)
T ss_pred CCeEEECCEEcccccccCCCCEEEEE
Confidence 34489999999999999999999986
No 75
>PRK07440 hypothetical protein; Provisional
Probab=78.15 E-value=2 Score=37.61 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=30.4
Q ss_pred cCCCCCceeee---cCCc--eeEEEEEEEccCCeeEEEe----cccccCCCCeEEEcCC
Q 003224 583 SLKMGHPVIRV---EGSN--LLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRP 632 (838)
Q Consensus 583 ~lp~G~tvl~~---vG~~--c~gAkV~~v~~nGr~~lVp----ls~~L~~GD~VeI~ts 632 (838)
+++.|.|+.++ .|.. -+...+ ||. +|| -++.|+.||.|||++.
T Consensus 15 ~~~~~~tl~~lL~~l~~~~~~vav~~-----N~~--iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 15 TCSSGTSLPDLLQQLGFNPRLVAVEY-----NGE--ILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred EcCCCCCHHHHHHHcCCCCCeEEEEE-----CCE--EeCHHHcCceecCCCCEEEEEEE
Confidence 36677776543 3333 333333 899 999 9999999999999863
No 76
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=76.93 E-value=2.8 Score=44.61 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=30.7
Q ss_pred cCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccccc
Q 003224 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165 (838)
Q Consensus 122 sGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~ 165 (838)
+|..-+.|+++||.+...+....|.+-.-+..||||||+..-..
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~ 76 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAID 76 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc
Confidence 78888999999997754443333332234668999999877543
No 77
>PRK06437 hypothetical protein; Provisional
Probab=76.64 E-value=1.6 Score=37.84 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=29.5
Q ss_pred CCCCCceeee---cCCc--eeEEEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003224 584 LKMGHPVIRV---EGSN--LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 584 lp~G~tvl~~---vG~~--c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
++.|.|+-+. .|-. -++..| ||+ +||.++.|+.||.|+|++.
T Consensus 17 i~~~~tv~dLL~~Lgi~~~~vaV~v-----Ng~--iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 17 IDHELTVNDIIKDLGLDEEEYVVIV-----NGS--PVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred cCCCCcHHHHHHHcCCCCccEEEEE-----CCE--ECCCceEcCCCCEEEEEec
Confidence 6677776432 3332 223334 899 9999999999999999753
No 78
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=73.46 E-value=2.2 Score=37.92 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=28.7
Q ss_pred CcchhhHHHHHHHHHHHcCCCCCC-ChhhHHHHhhhhcccccc
Q 003224 123 GDPYLTHCIHTGRILAMLIPSSGK-RAVDTVVAGILHDVVDDA 164 (838)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~~~~g~-~D~dtI~AALLHDvVEDT 164 (838)
+++.+.|.+.|+.+...+....+. .......||||||+-...
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 567889999999887544311111 134678999999997754
No 79
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=71.90 E-value=2.9 Score=37.28 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=32.5
Q ss_pred CCCCCce-------eeecCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003224 584 LKMGHPV-------IRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 584 lp~G~tv-------l~~vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~t 631 (838)
||.|+|+ |+.+...-+-|.|.+ ++ .|..+|.|+.||+|+|.+
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~F~~A~v~~----~~--~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKGFIEAVGGR----RR--LEGKDVILGKNDILKFKT 76 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhccEEEEEcc----CE--EECCCEEecCCCEEEEEC
Confidence 5677776 555777778888722 35 799999999999999975
No 80
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=71.19 E-value=3.8 Score=33.26 Aligned_cols=26 Identities=46% Similarity=0.759 Sum_probs=22.5
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEE
Q 003224 811 EGKLVLVNGQLV-LPNTELKDGDIVEV 836 (838)
Q Consensus 811 ~~~~~~VNg~lv-pl~~~L~~GD~VeI 836 (838)
..+.++|||+.+ .+++.++.||+|.+
T Consensus 24 ~~g~V~vn~~~~~~~~~~v~~~d~i~i 50 (70)
T cd00165 24 KHGHVLVNGKVVTKPSYKVKPGDVIEV 50 (70)
T ss_pred HcCCEEECCEEccCCccCcCCCCEEEE
Confidence 345689999999 89999999999876
No 81
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=69.17 E-value=4.3 Score=36.72 Aligned_cols=23 Identities=43% Similarity=0.332 Sum_probs=21.1
Q ss_pred EEECCEEeCCCccCCCCCEEEEe
Q 003224 815 VLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 815 ~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+.+|..+++++|+|++||.|-|+
T Consensus 56 ~~~~~~~~~~~t~L~dGDeVa~~ 78 (84)
T COG1977 56 AANNEFLVGLDTPLKDGDEVAFF 78 (84)
T ss_pred eeeceeeccccccCCCCCEEEEe
Confidence 57889999999999999999886
No 82
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=68.21 E-value=3.7 Score=34.58 Aligned_cols=24 Identities=46% Similarity=0.654 Sum_probs=20.1
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI 836 (838)
.+++|||+.++. .++|++||++.|
T Consensus 42 ngt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 42 NGTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp S-EEETTEEESSTSEEEE-TTEEEEE
T ss_pred CcEEECCEEcCCCCEEECCCCCEEEc
Confidence 568999999999 899999999986
No 83
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=67.43 E-value=4.9 Score=34.49 Aligned_cols=22 Identities=0% Similarity=0.004 Sum_probs=19.1
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003224 609 GGRELLVA----VSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVp----ls~~L~~GD~VeI~ts 632 (838)
||+ +|| =++.|+.||.|||++.
T Consensus 37 N~~--iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 37 NQQ--IIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCE--EeChHHcCccccCCCCEEEEEEE
Confidence 889 999 6678999999999864
No 84
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=67.02 E-value=5 Score=34.98 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||+ +||-++.|+.||.|++++.
T Consensus 45 Ng~--iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 45 NGK--VALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred CCE--ECCCCcCcCCCCEEEEEcc
Confidence 899 9999999999999999753
No 85
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=65.10 E-value=2.8 Score=38.42 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=12.1
Q ss_pred CeeEEEecccccCCCCeEEEcCC
Q 003224 610 GRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 610 Gr~~lVpls~~L~~GD~VeI~ts 632 (838)
|| .|++++.|+.||.|||.+.
T Consensus 53 Gk--~~~~d~~L~~GDRVEIYRP 73 (84)
T PF03658_consen 53 GK--LVKLDTVLRDGDRVEIYRP 73 (84)
T ss_dssp E---S--TT-B--TT-EEEEE-S
T ss_pred ee--EcCCCCcCCCCCEEEEecc
Confidence 88 8999999999999999766
No 86
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=64.49 E-value=5.8 Score=34.40 Aligned_cols=22 Identities=0% Similarity=-0.080 Sum_probs=20.1
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003224 609 GGRELLVAVS----FGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls----~~L~~GD~VeI~ts 632 (838)
||. +||=+ +.|+.||.|||++.
T Consensus 38 N~~--iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 38 NKD--ILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCE--EeCHHHcCceecCCCCEEEEEEE
Confidence 899 99999 99999999999863
No 87
>PRK10119 putative hydrolase; Provisional
Probab=60.61 E-value=18 Score=38.92 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
...+.++..|..+...+ ..+|.. +.|..+|......+....+....-..+||||||+..
T Consensus 4 ~~~~~~~~~~v~~~l~~--~~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 4 QHWQAQFENWLKNHHQH--QDAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHHHhhc--CCCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 34566777777766544 234544 567777654332221112223445679999999975
No 88
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=60.19 E-value=3.1 Score=47.48 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=34.6
Q ss_pred CeEeCCCCCCHHHHHHHhCCCCc-eEEECCEE--eCCCccCCCCCEEEE
Q 003224 791 EIMRLRSGSTAADAAMKVGLEGK-LVLVNGQL--VLPNTELKDGDIVEV 836 (838)
Q Consensus 791 ~i~~Lp~GsT~~DfAy~ihv~~~-~~~VNg~l--vpl~~~L~~GD~VeI 836 (838)
|....+.|||++|++|.||-+.- .++-.|+. +-=+|.+++||++..
T Consensus 320 Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 320 DFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred chhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEE
Confidence 56778899999999999996652 23333333 566999999999954
No 89
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=59.93 E-value=9.3 Score=32.55 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.6
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003224 609 GGRELLVAV----SFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpl----s~~L~~GD~VeI~ts 632 (838)
||+ +||- ++.|+.||.|||++.
T Consensus 36 N~~--iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 36 NGE--LVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCE--EcCHHHcCccccCCCCEEEEEEe
Confidence 889 9998 889999999999863
No 90
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=58.84 E-value=8.7 Score=32.43 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=23.7
Q ss_pred cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 124 ePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
.+-..|.+.|+.....+....+........||||||+-.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 344678888877655443222222234678999999744
No 91
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=57.55 E-value=9.8 Score=32.35 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=18.0
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003224 609 GGRELLVA----VSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVp----ls~~L~~GD~VeI~ts 632 (838)
||+ +|| -++.|+.||.|||++.
T Consensus 35 N~~--iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 35 NGE--IVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCE--EcCHHHcCceecCCCCEEEEEEe
Confidence 889 886 3468999999999863
No 92
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=56.97 E-value=9.4 Score=40.17 Aligned_cols=27 Identities=44% Similarity=0.704 Sum_probs=23.4
Q ss_pred CCceEEECCEEeC-CCccCCCCCEEEEe
Q 003224 811 EGKLVLVNGQLVL-PNTELKDGDIVEVR 837 (838)
Q Consensus 811 ~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 837 (838)
.+..|+|||+.|. +++.|+.||+|+|.
T Consensus 116 ~~G~V~VNgk~v~~ps~~v~~GD~I~v~ 143 (203)
T PRK05327 116 SHGHILVNGKKVNIPSYRVKPGDVIEVR 143 (203)
T ss_pred HCCcEEECCEEECCCCcCCCCCCEEEEC
Confidence 3445899999997 89999999999985
No 93
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=52.73 E-value=28 Score=31.24 Aligned_cols=55 Identities=27% Similarity=0.389 Sum_probs=38.5
Q ss_pred eEEEEcCCCCeEeCCCCCCHHHHHHHhC--------C----C-----Cc---e-EEECCEE-eC-CCccCCCCCEEEE
Q 003224 782 VVIVCWPNGEIMRLRSGSTAADAAMKVG--------L----E-----GK---L-VLVNGQL-VL-PNTELKDGDIVEV 836 (838)
Q Consensus 782 ~v~VftP~G~i~~Lp~GsT~~DfAy~ih--------v----~-----~~---~-~~VNg~l-vp-l~~~L~~GD~VeI 836 (838)
+.+-|+=+|+-+..++|.|.++++.+.| . + +. | |.|||+. |+ =.|++++|-.|+-
T Consensus 2 ~~v~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~T 79 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVET 79 (82)
T ss_dssp EEEEEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE-
T ss_pred CEEEEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEEE
Confidence 3457888999999999999999999986 2 0 11 2 7999997 53 3688899988864
No 94
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=52.69 E-value=6.2 Score=35.61 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.4
Q ss_pred chhhHHHHHHHHHHHcCCCC---CCChhhHHHHhhhhcccccc
Q 003224 125 PYLTHCIHTGRILAMLIPSS---GKRAVDTVVAGILHDVVDDA 164 (838)
Q Consensus 125 PYI~Hpl~VA~ILA~l~~~~---g~~D~dtI~AALLHDvVEDT 164 (838)
+...|.+.|+.+...+.... +.......+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 45789999888775543210 11124577999999998854
No 95
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=51.95 E-value=11 Score=45.53 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=24.9
Q ss_pred CCceEEECCEEeCCCccCCCCCEEEEeC
Q 003224 811 EGKLVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 811 ~~~~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
..-.++|||++++|++++.+|+.||++|
T Consensus 34 ~~v~a~vng~l~dL~~~l~~d~~Vefi~ 61 (638)
T PRK00413 34 AAVAGKVNGELVDLSTPIEEDASLEIIT 61 (638)
T ss_pred heEEEEECCEEeeCCccccCCCceeeee
Confidence 3456899999999999999999999985
No 96
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=50.64 E-value=11 Score=34.59 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=26.9
Q ss_pred eEeCCCCCCHHHHHHHhCCC-------Cce--------------EEECCE--EeCCCccCCCCCEEEEe
Q 003224 792 IMRLRSGSTAADAAMKVGLE-------GKL--------------VLVNGQ--LVLPNTELKDGDIVEVR 837 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ihv~-------~~~--------------~~VNg~--lvpl~~~L~~GD~VeI~ 837 (838)
--.++.|+|+.++|-.||-. ... +|=.|+ +.-=+|.+++||||.++
T Consensus 14 aWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 14 AWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFR 82 (84)
T ss_dssp EEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEE
T ss_pred EEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEE
Confidence 34689999999999999911 100 111333 34459999999999875
No 97
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=49.77 E-value=11 Score=37.53 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=24.5
Q ss_pred cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 124 ePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
+.-+.|.+.||.+...+....+......-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 344789999886643222111223456789999999865
No 98
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=49.70 E-value=15 Score=38.60 Aligned_cols=27 Identities=33% Similarity=0.726 Sum_probs=23.0
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEEe
Q 003224 811 EGKLVLVNGQLV-LPNTELKDGDIVEVR 837 (838)
Q Consensus 811 ~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 837 (838)
.+..|.|||+.| .+++.++.||+|+|.
T Consensus 113 ~~G~V~VNgk~v~~ps~~V~~GD~I~V~ 140 (200)
T TIGR01017 113 SHGHILVNGKKVDIPSYQVRPGDIISIK 140 (200)
T ss_pred HCCCEEECCEEeCCCCCCCCCCCEEEEe
Confidence 334589999999 689999999999985
No 99
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=47.92 E-value=16 Score=30.85 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.0
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003224 609 GGRELLVAV----SFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpl----s~~L~~GD~VeI~ts 632 (838)
||+ +||- ++.|+.||.|||++.
T Consensus 36 N~~--~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 36 NGD--FVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCE--EcCchhcccccCCCCCEEEEEee
Confidence 789 8886 688999999999864
No 100
>PRK03826 5'-nucleotidase; Provisional
Probab=47.85 E-value=27 Score=36.64 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=24.8
Q ss_pred cchhhHHHHHHHHH---HHcC---CCCCCChhhHHHHhhhhccccc
Q 003224 124 DPYLTHCIHTGRIL---AMLI---PSSGKRAVDTVVAGILHDVVDD 163 (838)
Q Consensus 124 ePYI~Hpl~VA~IL---A~l~---~~~g~~D~dtI~AALLHDvVED 163 (838)
|....|...||.+. +.+. ...+..-..++..||+||+.|=
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 45678999988663 2211 0111223356789999999983
No 101
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=47.06 E-value=16 Score=38.53 Aligned_cols=28 Identities=36% Similarity=0.648 Sum_probs=23.5
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003224 810 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 837 (838)
Q Consensus 810 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 837 (838)
+.+.-|.|||+.| -+++.++.||+|+|.
T Consensus 111 I~~G~V~VNGk~v~~ps~~Vk~GD~I~V~ 139 (201)
T CHL00113 111 VNHGHILVNGRIVDIPSYRCKPKDIITVK 139 (201)
T ss_pred HHCCcEEECCEEecCccccCCCCCEEEEc
Confidence 3445589999999 679999999999984
No 102
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=46.89 E-value=20 Score=37.92 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=23.7
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEEEEe
Q 003224 810 LEGKLVLVNGQLVL-PNTELKDGDIVEVR 837 (838)
Q Consensus 810 v~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 837 (838)
|.+..+.|||+.|. ++|.++-||.|+|.
T Consensus 116 V~HGHI~VnGk~V~iPSy~V~~gdei~V~ 144 (205)
T COG0522 116 VSHGHILVNGKRVNIPSYLVSPGDEISVR 144 (205)
T ss_pred hhcceEEECCEEeccCcEEecCCCEEEee
Confidence 55566899999996 68999999999985
No 103
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=45.86 E-value=16 Score=36.83 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=24.0
Q ss_pred cchhhHHHHHHHHH---HHcCCCCC--CChhhHHHHhhhhcccc
Q 003224 124 DPYLTHCIHTGRIL---AMLIPSSG--KRAVDTVVAGILHDVVD 162 (838)
Q Consensus 124 ePYI~Hpl~VA~IL---A~l~~~~g--~~D~dtI~AALLHDvVE 162 (838)
+..+.|.+.|+.+. +......+ ..-....+||||||+-.
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK 55 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGR 55 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCc
Confidence 45678999988664 33221111 22245778999999865
No 104
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=45.53 E-value=12 Score=39.00 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=28.7
Q ss_pred CcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccccc
Q 003224 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165 (838)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~ 165 (838)
.++-+.|+++||+...++..-.+.+...+=+||+|||..-+-+
T Consensus 15 ~~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 15 SEKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 3445899999987754443222233456779999999876544
No 105
>PRK11507 ribosome-associated protein; Provisional
Probab=44.35 E-value=23 Score=31.60 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=21.2
Q ss_pred CCCceEEECCEEeCCC-ccCCCCCEEEE
Q 003224 810 LEGKLVLVNGQLVLPN-TELKDGDIVEV 836 (838)
Q Consensus 810 v~~~~~~VNg~lvpl~-~~L~~GD~VeI 836 (838)
+....|+|||....-. .+|++||+|++
T Consensus 34 I~eg~V~VNGeve~rRgkKl~~GD~V~~ 61 (70)
T PRK11507 34 IAEGQVKVDGAVETRKRCKIVAGQTVSF 61 (70)
T ss_pred HHcCceEECCEEecccCCCCCCCCEEEE
Confidence 4446689999976553 58999999997
No 106
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=43.81 E-value=21 Score=38.93 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.1
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003224 810 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 837 (838)
Q Consensus 810 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 837 (838)
+....|+|||+.| -.++.++.||+|+|.
T Consensus 205 I~~G~V~VNg~~v~~~s~~v~~gD~Isvr 233 (257)
T TIGR03069 205 IKAGRLRLNWKTVTQPSRELKVGDRLQLR 233 (257)
T ss_pred HHCCeEEECCEEcCCCCCcCCCCCEEEEc
Confidence 4456689999999 799999999999985
No 107
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=42.76 E-value=21 Score=39.29 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003224 810 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 837 (838)
Q Consensus 810 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 837 (838)
+....|+|||+.+ ..++.++.||+|.|+
T Consensus 213 I~~g~V~vN~~~v~~~s~~v~~gD~isiR 241 (267)
T PLN00051 213 ISSGDVRVNWREVTKNGTTLKTGDVVSVS 241 (267)
T ss_pred HHcCcEEECCEEcCCCCCCCCCCCEEEEe
Confidence 4445689999997 799999999999987
No 108
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=42.37 E-value=44 Score=34.51 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=25.2
Q ss_pred ccCcch--hhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcc
Q 003224 121 KTGDPY--LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160 (838)
Q Consensus 121 ksGePY--I~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDv 160 (838)
.+|||. ..|.+..|. ||+-- | .+.+.|+||||||+
T Consensus 24 y~ge~VTq~eHaLQ~At-lAerd---G-a~~~lVaaALLHDi 60 (186)
T COG4341 24 YSGEPVTQLEHALQCAT-LAERD---G-ADTALVAAALLHDI 60 (186)
T ss_pred cccCcchhhhhHHHHhH-HHHhc---C-CcHHHHHHHHHHhH
Confidence 478874 579998774 44432 2 36789999999996
No 109
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=42.14 E-value=12 Score=34.07 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.7
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003224 609 GGRELLVAV----SFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpl----s~~L~~GD~VeI~ts 632 (838)
||. +||= ++.|+.||.|||++.
T Consensus 55 Ng~--iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 55 NNQ--VVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CCE--EeCHHHcCcccCCCCCEEEEEEE
Confidence 889 8884 578999999999864
No 110
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=41.60 E-value=19 Score=32.72 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.2
Q ss_pred CCeeEEEecccccCCCCeEEEcC
Q 003224 609 GGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~t 631 (838)
||+ -|+++|.++.||.|++..
T Consensus 55 NG~--~v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 55 NGR--PVDFDYRLKDGDRVAVYP 75 (81)
T ss_pred CCE--ECCCcccCCCCCEEEEEe
Confidence 799 899999999999999853
No 111
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=41.24 E-value=21 Score=30.93 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.1
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||+ +|+.++.|+.||.|+|+..
T Consensus 55 Ng~--~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 55 NGE--YVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCe--EcCCCcccCCCCEEEEeCC
Confidence 899 8999999999999999754
No 112
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=40.11 E-value=27 Score=32.10 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=32.3
Q ss_pred CeEeCCCCCCHHHHHHHhC--CCC--ce-----------------------EEECCEEeCCCccCCCCCEEEEe
Q 003224 791 EIMRLRSGSTAADAAMKVG--LEG--KL-----------------------VLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 791 ~i~~Lp~GsT~~DfAy~ih--v~~--~~-----------------------~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+--.++.|+|+-++|-.|| +.- .+ ++.-|+ +|.+++||++.++
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK----~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGK----DYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCC----ceEeeCCeEEEEE
Confidence 3457899999999999998 111 01 244565 8999999999875
No 113
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=39.66 E-value=16 Score=36.94 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=24.8
Q ss_pred CcchhhHHHHHHHHH---HHcCCCCCCChhhHHHHhhhhccccc
Q 003224 123 GDPYLTHCIHTGRIL---AMLIPSSGKRAVDTVVAGILHDVVDD 163 (838)
Q Consensus 123 GePYI~Hpl~VA~IL---A~l~~~~g~~D~dtI~AALLHDvVED 163 (838)
.|..-.|...||.+. +..... .......+..||+||+.|-
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~-~~d~~k~~~~aL~HDl~E~ 62 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGP-DLDIEKVVKMALFHDLPEA 62 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH--HC-HHHHHHHHHHTTTTHH
T ss_pred CccHHHHHHHHHHHHHHHhHHhcc-cCCHHHHHHHHhhccchhh
Confidence 456678998888663 332210 0123468889999999983
No 114
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=38.81 E-value=32 Score=31.12 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=24.1
Q ss_pred CceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003224 596 SNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 596 ~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
..|+.+.+ |.. ++++++.|+.||.|.|+..
T Consensus 51 ~~~v~~~~-----~~~--~~~~~t~L~dGDeVa~~PP 80 (84)
T COG1977 51 NIVVNAAN-----NEF--LVGLDTPLKDGDEVAFFPP 80 (84)
T ss_pred cceEEeee-----cee--eccccccCCCCCEEEEeCC
Confidence 46666665 556 9999999999999999753
No 115
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=37.11 E-value=20 Score=40.32 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=25.8
Q ss_pred cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 124 ePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
++...|.+.||.+...+....|..+.+.-.||||||+=.
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK 233 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITK 233 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhc
Confidence 455789999887653332211223467889999999765
No 116
>PRK00106 hypothetical protein; Provisional
Probab=36.44 E-value=27 Score=42.05 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=27.1
Q ss_pred cCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003224 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (838)
Q Consensus 122 sGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVED 163 (838)
.|...+.|.++||.+...+....|......-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 366778999999876432222112223567789999997554
No 117
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=36.22 E-value=93 Score=26.17 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=40.7
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCC--ceEEECCEEeCC-----CccCCCCCEEEEe
Q 003224 782 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEG--KLVLVNGQLVLP-----NTELKDGDIVEVR 837 (838)
Q Consensus 782 ~v~VftP~G~i--~~Lp~GsT~~DfAy~ih----v~~--~~~~VNg~lvpl-----~~~L~~GD~VeI~ 837 (838)
.|+|=+++|+. ++++...|..|+-.+|. +.. .....||++..- +|-+++|++|.++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 36888998885 56678999999988884 332 124568887663 4568899998875
No 118
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=35.17 E-value=22 Score=41.49 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHcCCC--CCCCh-------hhHHHHhhhhcc
Q 003224 126 YLTHCIHTGRILAMLIPS--SGKRA-------VDTVVAGILHDV 160 (838)
Q Consensus 126 YI~Hpl~VA~ILA~l~~~--~g~~D-------~dtI~AALLHDv 160 (838)
-+.|++.|..+...+... ....+ ..+.+||||||+
T Consensus 52 RFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 52 RFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred ccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 378999988776544321 00000 037899999996
No 119
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=34.66 E-value=68 Score=40.14 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=44.7
Q ss_pred eEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCC--------------ce-EEECCEEeC-CCccCCCCCEEEE
Q 003224 782 VVIVCWPNGEIMRLRSGSTAADAAMKVG--LEG--------------KL-VLVNGQLVL-PNTELKDGDIVEV 836 (838)
Q Consensus 782 ~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~--------------~~-~~VNg~lvp-l~~~L~~GD~VeI 836 (838)
..+..|=+|+-+..|.|+|.+++|-+-| |.+ .| |-|||++++ -+|++.+|..|..
T Consensus 4 ~~i~vtidg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t 76 (978)
T COG3383 4 KMITVTIDGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRT 76 (978)
T ss_pred eeEEEEECCeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEec
Confidence 4467788999999999999999999976 222 22 699999987 4899999998854
No 120
>PRK12705 hypothetical protein; Provisional
Probab=34.09 E-value=32 Score=41.11 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=27.6
Q ss_pred cCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 122 sGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
.|...+.|.++||.+...+....|........||||||+=.
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK 360 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGK 360 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCC
Confidence 35557889999987654333222333445778999999866
No 121
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional
Probab=33.23 E-value=32 Score=38.30 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.3
Q ss_pred CceEEECCEEeCCCccCCCCCEEEE
Q 003224 812 GKLVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 812 ~~~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
...++|||+.+..++.|+.||+|+|
T Consensus 44 ~G~V~VNg~~v~~~~~v~~GD~I~i 68 (317)
T PRK11025 44 KGEVRVNKKRIKPEYKLEAGDEVRI 68 (317)
T ss_pred cCCEEECCEEcCcccccCCCCEEEe
Confidence 4467999999999999999999987
No 122
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=33.09 E-value=36 Score=29.18 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred CCeeEEEec---ccccCCCCeEEEcCC
Q 003224 609 GGRELLVAV---SFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpl---s~~L~~GD~VeI~ts 632 (838)
||+ +++- ++.|+.||.|+|+..
T Consensus 49 N~~--~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 49 NGE--IVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp TTE--EEGGGTTTSBEETTEEEEEEES
T ss_pred CCE--EcCCccCCcCcCCCCEEEEECC
Confidence 899 9999 999999999999753
No 123
>PRK12704 phosphodiesterase; Provisional
Probab=32.67 E-value=34 Score=40.97 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=25.4
Q ss_pred CcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
|...+.|.+.||.+...+...-|........||||||+=.
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK 372 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGK 372 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCc
Confidence 4456789999887643222212233445778999999644
No 124
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=32.29 E-value=32 Score=38.16 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=22.9
Q ss_pred ceEEECCEEeCCCccCCCCCEEEEe
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
..++|||+.|-.++.|+.||+|++-
T Consensus 37 g~v~vNg~~v~~~~~l~~gd~i~~~ 61 (289)
T COG0564 37 GRVRVNGKKVKPSYKLKPGDVVRIP 61 (289)
T ss_pred CCEEECCEEccCCeeeCCCCEEEEe
Confidence 3789999999999999999999874
No 125
>COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown]
Probab=32.09 E-value=36 Score=37.20 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=25.8
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEEEEe
Q 003224 810 LEGKLVLVNGQLVL-PNTELKDGDIVEVR 837 (838)
Q Consensus 810 v~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 837 (838)
|..+.|+||.+.|. .+++++-||.+.|+
T Consensus 202 Ie~g~VkVN~k~v~~~s~~v~~GDliSir 230 (257)
T COG2302 202 IEKGKVKVNWKVVDKASYEVQEGDLISIR 230 (257)
T ss_pred HHcCceEEeeEEeccccceeccCCEEEEe
Confidence 77778999999999 99999999999986
No 126
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=29.60 E-value=43 Score=29.60 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.8
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||+ .++.++.|+.||.|+++..
T Consensus 57 N~~--~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 57 NEE--YTTESAALKDGDELAIIPP 78 (82)
T ss_pred CCE--EcCCCcCcCCCCEEEEeCC
Confidence 789 8999999999999999753
No 127
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=29.50 E-value=39 Score=40.43 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=24.8
Q ss_pred CcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
|...+.|.+.||.+...+....|........||||||+=-
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 3345789999987743322212232335667999999744
No 128
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=29.41 E-value=70 Score=34.27 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=52.0
Q ss_pred cchhhHHHHHHHHH---HHcCCCCC-CChhh-HHHHhhhhcccccccCCHHHHHHHhcHHHHHHHHHhhhhhhhhHHHHH
Q 003224 124 DPYLTHCIHTGRIL---AMLIPSSG-KRAVD-TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 198 (838)
Q Consensus 124 ePYI~Hpl~VA~IL---A~l~~~~g-~~D~d-tI~AALLHDvVEDT~~T~eeI~~~FG~eVA~LV~gVTKl~~l~~~~r~ 198 (838)
+..-.|...||.|. +.+....| ..|.. ....||.||..|-..-..-.=-+.+.++...++..|.+...-..+..
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TPVKy~tPelr~~~~~VE~~m~~~~i~~- 106 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTPVKYATPELREMLAQVEEEMTENFIKK- 106 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-SSSS-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHh-
Confidence 34567888877654 33211112 23443 44789999999953211111112345555555555554322111100
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHhhcCC-ccEEEeehhhHHhhh
Q 003224 199 HRRINVNQGTLGHEEANDLRVMLLGMVDD-PRVVLIKLADRLHNM 242 (838)
Q Consensus 199 ~rr~~~~~~~~~~~qaEnlRKmLLAma~D-~RVvLIKLADRLhNM 242 (838)
....+-.+.+|.++.---+| +-..+||.||.++-+
T Consensus 107 ---------~iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal 142 (215)
T PF12917_consen 107 ---------EIPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDAL 142 (215)
T ss_dssp ---------HS-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHH
T ss_pred ---------hCCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Confidence 01122345566665543332 678899999999865
No 129
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=29.09 E-value=41 Score=38.11 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCCceEEECCEEe
Q 003224 799 STAADAAMKVGLEGKLVLVNGQLV 822 (838)
Q Consensus 799 sT~~DfAy~ihv~~~~~~VNg~lv 822 (838)
+||-|.+.+|-+|..++.||--++
T Consensus 259 g~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 259 GTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred CCHHHHHHHHHcCCCEEEEcceec
Confidence 689999999999999999987765
No 130
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=29.05 E-value=56 Score=32.54 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCceEEECCEEeCCCccCCCCCEEEEe
Q 003224 811 EGKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 811 ~~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
....|+|||+.+-+..+++.||.|.|.
T Consensus 32 ~~G~V~vnG~~~Kps~~V~~gd~l~v~ 58 (133)
T PRK10348 32 EGGKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_pred HCCCEEECCEECCCCCccCCCCEEEEE
Confidence 334589999999999999999999874
No 131
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=27.09 E-value=97 Score=34.75 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=38.3
Q ss_pred cCCCCeEeC-CCCCCHHHHHHHhC--CCC-------------c-e-EEECCE--Ee-CCCccCCCCCEEEE
Q 003224 787 WPNGEIMRL-RSGSTAADAAMKVG--LEG-------------K-L-VLVNGQ--LV-LPNTELKDGDIVEV 836 (838)
Q Consensus 787 tP~G~i~~L-p~GsT~~DfAy~ih--v~~-------------~-~-~~VNg~--lv-pl~~~L~~GD~VeI 836 (838)
+=+|.-++. |.|.|.+|+|.+.| |+. + | |.|+|+ +| .=.|+.++|=.|.-
T Consensus 72 ~IDGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T 142 (297)
T PTZ00305 72 FVNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIIT 142 (297)
T ss_pred EECCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEe
Confidence 349999999 99999999999987 222 1 2 699986 43 34788899988764
No 132
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=26.05 E-value=1.8e+02 Score=30.50 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=53.9
Q ss_pred ccCcchhhHHHHHHHHH---HHcCCCCC--CChhhHHHHhhhhcccccc--cCC--HHHHHHHhcHHHHHHHHHhhhhhh
Q 003224 121 KTGDPYLTHCIHTGRIL---AMLIPSSG--KRAVDTVVAGILHDVVDDA--CES--LGSIEEEFGDEVAKLVAGVSRLSY 191 (838)
Q Consensus 121 ksGePYI~Hpl~VA~IL---A~l~~~~g--~~D~dtI~AALLHDvVEDT--~~T--~eeI~~~FG~eVA~LV~gVTKl~~ 191 (838)
..++....|.+.||.+- +......| ......+..||+||..|-- +++ ............-+..+.+.+..
T Consensus 29 ~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~- 107 (193)
T COG1896 29 WNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLL- 107 (193)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHcc-
Confidence 35788888988877542 22221111 1234588899999998852 222 22222233333333333332210
Q ss_pred hhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhh
Q 003224 192 INQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNM 242 (838)
Q Consensus 192 l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNM 242 (838)
+ ....+-.+-+|.++- .++..+.+||.||.|..+
T Consensus 108 ~---------------~~p~e~~~~~~~~~~--~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 108 F---------------GLPEELLELFREYEK--RSSLEARIVKDADKLELL 141 (193)
T ss_pred c---------------CCcHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHH
Confidence 0 001111233333322 356788999999999987
No 133
>PTZ00258 GTP-binding protein; Provisional
Probab=25.56 E-value=41 Score=39.00 Aligned_cols=49 Identities=8% Similarity=0.131 Sum_probs=37.7
Q ss_pred CCCCCce-------eeecCCceeEEEEEEEc------------cCCeeEEEecccccCCCCeEEEcCC
Q 003224 584 LKMGHPV-------IRVEGSNLLAAVIIRVE------------KGGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 584 lp~G~tv-------l~~vG~~c~gAkV~~v~------------~nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
+|.|+|+ |+.++-.-+-|+|++-+ .-|+.+++--+|.++.||+|++..+
T Consensus 320 i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fn 387 (390)
T PTZ00258 320 IQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFN 387 (390)
T ss_pred eCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEec
Confidence 7888776 66676677778885533 3476668999999999999999754
No 134
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=25.54 E-value=74 Score=33.56 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=30.6
Q ss_pred EeCCCCCCHHHHHHHhC----------CCC------ce-EEECCEEe-CCCccCCC-CC
Q 003224 793 MRLRSGSTAADAAMKVG----------LEG------KL-VLVNGQLV-LPNTELKD-GD 832 (838)
Q Consensus 793 ~~Lp~GsT~~DfAy~ih----------v~~------~~-~~VNg~lv-pl~~~L~~-GD 832 (838)
++.+.|.|.+|+..+|+ .++ .| ++|||+.+ .-.|++++ |.
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~ 77 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQ 77 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCC
Confidence 35569999999999875 111 23 69999988 58888888 87
No 135
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.79 E-value=99 Score=29.29 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=30.4
Q ss_pred cCCCCCceee----------ecCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 003224 583 SLKMGHPVIR----------VEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 633 (838)
Q Consensus 583 ~lp~G~tvl~----------~vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~ 633 (838)
.|+.|+||-+ |.+-....+|| .| =|| .|.++.+|+.||.|||.+.-
T Consensus 22 ~v~egatV~dAi~~Sgll~~~~~idl~~n~~-GI--~~k--~~kl~~~l~dgDRVEIyRPL 77 (99)
T COG2914 22 QLQEGATVEDAILASGLLELFPDIDLHENKV-GI--YSK--PVKLDDELHDGDRVEIYRPL 77 (99)
T ss_pred EeccCcCHHHHHHhcchhhccccCCccccce-eE--Ecc--ccCccccccCCCEEEEeccc
Confidence 3677877732 22323333343 22 267 79999999999999998774
No 136
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=24.64 E-value=38 Score=29.71 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=12.9
Q ss_pred eEEECCEEeCC-CccCCCCCEEEE
Q 003224 814 LVLVNGQLVLP-NTELKDGDIVEV 836 (838)
Q Consensus 814 ~~~VNg~lvpl-~~~L~~GD~VeI 836 (838)
.|+|||....= ..+|++||+|++
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HHEETTB----SS----SSEEEEE
T ss_pred ceEECCEEccccCCcCCCCCEEEE
Confidence 37999987654 468999999997
No 137
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional
Probab=24.45 E-value=60 Score=36.27 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=22.8
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEEe
Q 003224 811 EGKLVLVNGQLV-LPNTELKDGDIVEVR 837 (838)
Q Consensus 811 ~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 837 (838)
....|+|||+.+ ..++.|+.||+|+|.
T Consensus 41 ~~G~V~VNg~~v~~~~~~v~~gD~I~v~ 68 (325)
T PRK11180 41 LDQRVLVNGKVINKPKEKVLGGEQVAID 68 (325)
T ss_pred HCCCEEECCEEccCCCcCcCCCCEEEEe
Confidence 344689999988 589999999999984
No 138
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=24.17 E-value=79 Score=27.84 Aligned_cols=21 Identities=19% Similarity=-0.032 Sum_probs=19.2
Q ss_pred CCeeEEEecccccCCCCeEEEcC
Q 003224 609 GGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~t 631 (838)
||+ .++.++.|+.||.|+|+.
T Consensus 55 n~~--~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 55 NEE--YVTDDALLNEGDEVAFIP 75 (80)
T ss_pred CCE--EcCCCcCcCCCCEEEEeC
Confidence 789 899999999999999974
No 139
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=24.08 E-value=2.5e+02 Score=24.14 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=39.8
Q ss_pred eEEEEcCCCCeE--eCCCCCCHHHHHHHhC----C--CC-c-eEEECCEEeCC-----CccCCCCCEEEEe
Q 003224 782 VVIVCWPNGEIM--RLRSGSTAADAAMKVG----L--EG-K-LVLVNGQLVLP-----NTELKDGDIVEVR 837 (838)
Q Consensus 782 ~v~VftP~G~i~--~Lp~GsT~~DfAy~ih----v--~~-~-~~~VNg~lvpl-----~~~L~~GD~VeI~ 837 (838)
.|+|-|+.|+.+ +++...|+.|+=..|. + .. . ....||+...= ++.+++|+.|-++
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEE
Confidence 478899999875 5667789999877774 3 22 1 24678887653 3678999988764
No 140
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.07 E-value=40 Score=35.44 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=16.6
Q ss_pred EEEEcCCCC---eEeCCCCCCHHHH
Q 003224 783 VIVCWPNGE---IMRLRSGSTAADA 804 (838)
Q Consensus 783 v~VftP~G~---i~~Lp~GsT~~Df 804 (838)
+.-|+|.|+ +..||.||||+-.
T Consensus 24 i~~f~p~~dkyf~lglptgstplg~ 48 (273)
T KOG3148|consen 24 INQFTPGGDKYFVLGLPTGSTPLGM 48 (273)
T ss_pred HhhcCCCCceEEEEecCCCCCchhH
Confidence 345677775 5789999999864
No 141
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=24.01 E-value=50 Score=37.59 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhcCCccc--cCc---chhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccc
Q 003224 101 DEQVQKAIAFAKRAHHGQFRK--TGD---PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161 (838)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~Rk--sGe---PYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvV 161 (838)
.++|-..-.|=+-.+..|.-- .+. .-++|.++|+.+-..+...-+....-+-+|||+||+=
T Consensus 33 ~drii~s~~frRL~~ktQv~~~~~~dh~rtR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 33 RDRIIHSKAFRRLKHKTQVFINPEGDHYRTRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred HHHHhCCHHHHhhhccceecccCCCcccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 355555555655566666531 222 3479999999875433211111223355799999963
No 142
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=23.64 E-value=86 Score=27.87 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.1
Q ss_pred CCeeEEEecccccCCCCeEEEcC
Q 003224 609 GGRELLVAVSFGLAASEVVADRR 631 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~t 631 (838)
|++ ++..++.|+.||.|.|+.
T Consensus 56 N~~--~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 56 NQT--LVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCE--EcCCCCCCCCCCEEEEeC
Confidence 788 899999999999999974
No 143
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=23.40 E-value=51 Score=38.65 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhcCCccc--cCcc---hhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccc
Q 003224 101 DEQVQKAIAFAKRAHHGQFRK--TGDP---YLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161 (838)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~Rk--sGeP---YI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvV 161 (838)
.++|--.-.|-+-.++.|.=. .|.- -++|.++||.|-..+...-|....-+.+|||+||+=
T Consensus 41 rdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~G 106 (428)
T PRK03007 41 RARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106 (428)
T ss_pred HHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 356766667777778888533 2322 379999999876433221122223467899999973
No 144
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=22.79 E-value=44 Score=31.47 Aligned_cols=12 Identities=50% Similarity=0.888 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcC
Q 003224 278 AELEDLCFAVLQ 289 (838)
Q Consensus 278 ~ELEDLaF~~L~ 289 (838)
.||||+||+|-+
T Consensus 20 t~LED~CfkfNY 31 (109)
T PF04753_consen 20 TELEDFCFKFNY 31 (109)
T ss_pred chHHHHHHHhcc
Confidence 689999999754
No 145
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=22.66 E-value=76 Score=28.60 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=19.5
Q ss_pred CCceEEECCEEeCC-CccCCCCCEEEE
Q 003224 811 EGKLVLVNGQLVLP-NTELKDGDIVEV 836 (838)
Q Consensus 811 ~~~~~~VNg~lvpl-~~~L~~GD~VeI 836 (838)
.+..|+|||..-.= ..+|.+||+|+|
T Consensus 35 ~eg~V~vNGe~EtRRgkKlr~gd~V~i 61 (73)
T COG2501 35 AEGEVKVNGEVETRRGKKLRDGDVVEI 61 (73)
T ss_pred HCCeEEECCeeeeccCCEeecCCEEEE
Confidence 34568999985443 357999999997
No 146
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=22.32 E-value=1.2e+02 Score=34.22 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=28.7
Q ss_pred eEeCCCCCCHHHHHHHhC--CC--------C------ce-EEECCEEeCC-CccCCC
Q 003224 792 IMRLRSGSTAADAAMKVG--LE--------G------KL-VLVNGQLVLP-NTELKD 830 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ih--v~--------~------~~-~~VNg~lvpl-~~~L~~ 830 (838)
-+..+.|.|.+|++.+|+ +. + .| ++|||+.+.- .|.+.+
T Consensus 22 ~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~~ 78 (329)
T PRK12577 22 TLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGS 78 (329)
T ss_pred EEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchhh
Confidence 356789999999999996 32 2 23 6999998763 666654
No 147
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=21.98 E-value=91 Score=27.46 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.8
Q ss_pred eEEECCEEeC--CCccCCCCCEEEEe
Q 003224 814 LVLVNGQLVL--PNTELKDGDIVEVR 837 (838)
Q Consensus 814 ~~~VNg~lvp--l~~~L~~GD~VeI~ 837 (838)
++.|||+.++ -.++|++||++.|-
T Consensus 67 g~~vn~~~~~~~~~~~l~~gd~i~ig 92 (102)
T cd00060 67 GTFVNGQRVSPGEPVRLRDGDVIRLG 92 (102)
T ss_pred CeEECCEECCCCCcEECCCCCEEEEC
Confidence 4799999999 68999999999873
No 148
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.10 E-value=1e+02 Score=35.57 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCeEe--CCCCCCHHHHHHH-hC-CCCceEEE-----CCEE--eCCCccCCCCCEEEEe
Q 003224 770 ANGNPDSVVPGEVVIVCWPNGEIMR--LRSGSTAADAAMK-VG-LEGKLVLV-----NGQL--VLPNTELKDGDIVEVR 837 (838)
Q Consensus 770 f~~~~k~dl~~~~v~VftP~G~i~~--Lp~GsT~~DfAy~-ih-v~~~~~~V-----Ng~l--vpl~~~L~~GD~VeI~ 837 (838)
|++-+- ++..--+++=-.+|+||+ +|.||- |||| |+ +.-+-.+| ||++ +..+-.|+.||++-|.
T Consensus 132 F~~~Lp-~I~~tp~~iGLgkGEImEI~vp~gSi---faYrhi~sI~qk~~RIvl~YRN~klll~~~slvlqp~D~lLVv 206 (471)
T COG3400 132 FISRLP-NIPSTPREIGLGKGEIMEIDVPFGSI---FAYRHIGSIRQKEYRIVLLYRNDKLLLSTKSLVLQPRDILLVV 206 (471)
T ss_pred HHHhcC-CccccchhcccccceEEEEecCCCch---hhhhhhhhhhhheeEEEEEEECCEEEEeccceEecCCCEEEEe
No 149
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=20.98 E-value=1.3e+02 Score=32.97 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhh-HHHHhhhhcc
Q 003224 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD-TVVAGILHDV 160 (838)
Q Consensus 104 l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~d-tI~AALLHDv 160 (838)
|.+|+++.-..-...-.....|-|.|.+++|+.+..-.+ +++ ...+||+||+
T Consensus 41 i~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~-----~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHP-----DPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHST-----T-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCC-----Ccchhhheehhccc
Confidence 556666654444332223456889999999988876543 345 4479999996
No 150
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.43 E-value=89 Score=25.83 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=19.6
Q ss_pred CCCCeEEEEcCCCCeEeCCCCCC
Q 003224 778 VPGEVVIVCWPNGEIMRLRSGST 800 (838)
Q Consensus 778 l~~~~v~VftP~G~i~~Lp~GsT 800 (838)
+..+.++|.||+|+.+.+|.-..
T Consensus 3 i~~~~aiVlT~dGeF~~ik~~~~ 25 (56)
T PF12791_consen 3 IKKKYAIVLTPDGEFIKIKRKPG 25 (56)
T ss_pred CcCCEEEEEcCCCcEEEEeCCCC
Confidence 55678999999999999998665
Done!