Query 003224
Match_columns 838
No_of_seqs 507 out of 2441
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:45:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 2.6E-99 9E-104 837.0 24.9 354 99-570 23-382 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 1.9E-42 6.4E-47 363.4 8.1 113 421-542 73-196 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 3.2E-37 1.1E-41 319.4 9.4 153 421-582 44-216 (226)
4 3nqw_A CG11900; stringent resp 100.0 2.7E-33 9.4E-38 280.7 10.4 166 100-287 5-176 (179)
5 3nr1_A HD domain-containing pr 100.0 4E-32 1.4E-36 272.1 11.9 147 100-268 3-157 (178)
6 3hvz_A Uncharacterized protein 99.8 5.8E-20 2E-24 161.1 5.7 62 777-838 2-67 (78)
7 2eki_A DRG 1, developmentally- 99.2 9.2E-12 3.1E-16 112.2 6.9 58 781-838 10-86 (93)
8 2kmm_A Guanosine-3',5'-BIS(dip 99.0 1.7E-10 5.8E-15 98.1 5.7 56 783-838 3-62 (73)
9 3hvz_A Uncharacterized protein 98.9 1.5E-10 5E-15 101.6 1.7 52 576-634 9-70 (78)
10 1wwt_A Threonyl-tRNA synthetas 98.8 7.4E-09 2.5E-13 91.5 6.4 59 780-838 9-72 (88)
11 1wxq_A GTP-binding protein; st 98.6 1.4E-08 4.7E-13 112.9 4.1 58 781-838 318-394 (397)
12 2eki_A DRG 1, developmentally- 97.7 1E-05 3.5E-10 73.0 1.7 57 577-635 14-90 (93)
13 2l32_A Small archaeal modifier 97.6 3.5E-05 1.2E-09 66.7 4.4 48 790-838 12-61 (74)
14 2hj1_A Hypothetical protein; s 97.6 1.8E-05 6.3E-10 72.0 2.4 57 781-837 16-83 (97)
15 1rws_A Hypothetical protein PF 97.6 4E-05 1.4E-09 66.4 3.9 53 786-838 18-72 (77)
16 2k5p_A THis protein, thiamine- 97.5 8.7E-05 3E-09 64.8 4.5 52 787-838 4-64 (78)
17 1f0z_A THis protein; ubiquitin 97.4 0.00013 4.4E-09 61.2 4.7 52 787-838 4-61 (66)
18 2kl0_A Putative thiamin biosyn 97.4 0.00015 5.1E-09 62.5 4.6 51 787-838 4-60 (73)
19 1tyg_B YJBS; alpha beta barrel 97.4 0.0002 7E-09 63.9 5.6 53 786-838 23-82 (87)
20 2kmm_A Guanosine-3',5'-BIS(dip 97.3 6.9E-05 2.3E-09 63.3 2.1 52 576-634 4-65 (73)
21 1ryj_A Unknown; beta/alpha pro 97.2 0.00038 1.3E-08 59.2 5.0 51 788-838 9-65 (70)
22 2cu3_A Unknown function protei 97.1 0.00046 1.6E-08 57.5 4.8 51 787-838 3-59 (64)
23 1wwt_A Threonyl-tRNA synthetas 97.0 0.00025 8.6E-09 62.3 2.2 53 576-635 13-76 (88)
24 2q5w_D Molybdopterin convertin 96.6 0.0015 5.2E-08 55.7 4.2 48 791-838 18-72 (77)
25 1tke_A Threonyl-tRNA synthetas 96.4 0.00088 3E-08 68.7 1.6 52 577-635 4-65 (224)
26 1vjk_A Molybdopterin convertin 96.1 0.0043 1.5E-07 55.8 4.6 47 791-837 29-92 (98)
27 3po0_A Small archaeal modifier 96.1 0.0062 2.1E-07 53.4 5.2 46 792-837 21-83 (89)
28 1wxq_A GTP-binding protein; st 95.7 0.0012 4.1E-08 73.4 -1.2 45 584-633 345-396 (397)
29 1fm0_D Molybdopterin convertin 95.7 0.014 4.8E-07 50.0 5.8 42 796-837 23-75 (81)
30 4a9a_A Ribosome-interacting GT 94.9 0.01 3.6E-07 65.6 2.8 44 795-838 320-375 (376)
31 2g1e_A Hypothetical protein TA 94.8 0.036 1.2E-06 48.3 5.6 47 792-838 18-85 (90)
32 3rpf_C Molybdopterin convertin 93.4 0.11 3.6E-06 44.2 5.4 45 792-837 15-68 (74)
33 2dby_A GTP-binding protein; GD 92.3 0.14 4.8E-06 56.3 6.0 56 782-837 284-365 (368)
34 3dwg_C 9.5 kDa culture filtrat 91.9 0.19 6.4E-06 44.3 5.2 42 796-837 23-87 (93)
35 2l52_A Methanosarcina acetivor 90.3 0.23 8E-06 44.6 4.2 44 793-837 23-93 (99)
36 1tke_A Threonyl-tRNA synthetas 90.1 0.16 5.5E-06 51.8 3.4 27 812-838 35-61 (224)
37 1jal_A YCHF protein; nucleotid 89.9 0.23 7.9E-06 54.7 4.7 56 782-837 279-360 (363)
38 3dto_A BH2835 protein; all alp 88.7 0.48 1.6E-05 48.7 5.7 60 100-162 3-62 (223)
39 3b57_A LIN1889 protein; Q92AN1 87.7 0.42 1.4E-05 48.1 4.5 61 101-164 4-64 (209)
40 1v8c_A MOAD related protein; r 87.2 0.66 2.3E-05 45.8 5.4 45 792-837 17-81 (168)
41 2ohf_A Protein OLA1, GTP-bindi 85.6 0.49 1.7E-05 52.7 3.9 56 782-837 305-386 (396)
42 2qjl_A URM1, ubiquitin-related 84.3 0.88 3E-05 40.7 4.3 45 793-837 24-93 (99)
43 2pjq_A Uncharacterized protein 84.2 0.79 2.7E-05 47.0 4.5 63 97-162 5-67 (231)
44 1ni3_A YCHF GTPase, YCHF GTP-b 82.4 0.83 2.9E-05 50.7 4.1 57 781-837 306-388 (392)
45 1rws_A Hypothetical protein PF 80.0 0.57 1.9E-05 40.1 1.3 22 609-632 52-73 (77)
46 2k6p_A Uncharacterized protein 78.9 1.2 4.1E-05 39.1 3.1 24 814-837 27-50 (92)
47 2l32_A Small archaeal modifier 78.4 0.59 2E-05 40.1 0.9 42 583-632 16-62 (74)
48 1vj7_A Bifunctional RELA/SPOT; 76.8 0.5 1.7E-05 52.6 0.0 25 738-762 358-382 (393)
49 3djb_A Hydrolase, HD family; a 76.4 3.6 0.00012 42.2 6.2 59 101-162 4-62 (223)
50 2hj1_A Hypothetical protein; s 76.4 0.76 2.6E-05 41.6 1.1 22 609-632 64-85 (97)
51 2paq_A 5'-deoxynucleotidase YF 75.1 3.5 0.00012 41.6 5.7 40 123-162 29-74 (201)
52 1f0z_A THis protein; ubiquitin 73.2 1.5 5.1E-05 36.2 2.0 22 609-632 37-62 (66)
53 1ryj_A Unknown; beta/alpha pro 72.3 1.8 6.1E-05 36.4 2.3 22 609-632 45-66 (70)
54 1dm9_A Hypothetical 15.5 KD pr 71.9 2.1 7.2E-05 40.6 3.0 26 812-837 33-58 (133)
55 3gqs_A Adenylate cyclase-like 71.9 3.1 0.00011 37.3 4.0 24 813-836 69-92 (106)
56 1tyg_B YJBS; alpha beta barrel 71.1 2.5 8.5E-05 37.5 3.0 21 609-631 58-82 (87)
57 2k5p_A THis protein, thiamine- 67.8 1.8 6.2E-05 37.4 1.4 22 609-632 40-65 (78)
58 3fm8_A Kinesin-like protein KI 67.7 3.1 0.00011 39.1 3.1 23 814-836 91-113 (124)
59 2kl0_A Putative thiamin biosyn 67.4 3.2 0.00011 35.4 2.9 22 609-632 36-61 (73)
60 2k9x_A Tburm1, uncharacterized 66.7 3.3 0.00011 38.2 3.0 24 814-837 69-96 (110)
61 2qgs_A Protein Se1688; alpha-h 65.8 7.7 0.00026 39.4 5.9 60 101-163 4-64 (225)
62 2q5w_D Molybdopterin convertin 65.3 4.1 0.00014 34.1 3.1 22 609-632 52-73 (77)
63 2pq7_A Predicted HD superfamil 62.7 5.8 0.0002 39.8 4.2 55 103-160 14-68 (220)
64 4ejq_A Kinesin-like protein KI 61.2 4.5 0.00015 39.1 3.0 23 814-836 111-133 (154)
65 2cu3_A Unknown function protei 59.2 8.1 0.00028 31.6 3.8 22 609-632 35-60 (64)
66 1p9k_A ORF, hypothetical prote 57.2 4 0.00014 34.8 1.6 22 815-836 48-70 (79)
67 1c05_A Ribosomal protein S4 de 57.1 5.5 0.00019 38.8 2.8 25 813-837 76-101 (159)
68 1wgk_A Riken cDNA 2900073H19 p 56.4 5.7 0.0002 36.7 2.7 24 814-837 75-102 (114)
69 2vqe_D 30S ribosomal protein S 55.5 5.8 0.0002 40.4 2.8 25 813-837 124-149 (209)
70 2pie_A E3 ubiquitin-protein li 55.4 14 0.00046 34.8 5.1 24 813-836 75-100 (138)
71 2o08_A BH1327 protein; putativ 54.3 4.4 0.00015 39.8 1.6 38 125-162 18-55 (188)
72 3ccg_A HD superfamily hydrolas 54.0 4.4 0.00015 39.9 1.6 37 126-162 20-56 (190)
73 4egx_A Kinesin-like protein KI 53.8 7.1 0.00024 38.9 3.0 22 815-836 142-163 (184)
74 3kh1_A Predicted metal-depende 53.1 17 0.00057 36.8 5.6 63 100-162 6-79 (200)
75 1wln_A Afadin; beta sandwich, 52.1 6 0.0002 36.3 2.0 24 813-836 80-103 (120)
76 3po8_A RV0020C protein, putati 51.9 6.5 0.00022 34.7 2.2 23 813-836 65-87 (100)
77 2ogi_A Hypothetical protein SA 51.3 5.2 0.00018 39.7 1.6 38 125-162 26-63 (196)
78 1fm0_D Molybdopterin convertin 50.7 11 0.00037 31.7 3.3 22 609-632 56-77 (81)
79 4h87_A Kanadaptin; FHA domain 50.7 9.8 0.00033 35.7 3.3 24 813-836 94-119 (130)
80 1lgp_A Cell cycle checkpoint p 50.6 10 0.00035 34.3 3.3 25 813-837 68-94 (116)
81 2csw_A Ubiquitin ligase protei 49.4 13 0.00044 35.3 4.0 24 813-836 83-108 (145)
82 2gz4_A Hypothetical protein AT 49.0 15 0.00052 37.4 4.6 37 124-163 54-90 (207)
83 2ibn_A Inositol oxygenase; red 48.1 14 0.00049 38.6 4.2 53 104-161 38-91 (250)
84 3hx1_A SLR1951 protein; P74513 46.9 8.3 0.00028 36.2 2.1 23 813-836 82-104 (131)
85 1vjk_A Molybdopterin convertin 46.4 12 0.00043 33.0 3.1 22 609-632 73-94 (98)
86 2jqj_A DNA damage response pro 44.7 9.6 0.00033 36.4 2.2 24 813-836 87-111 (151)
87 3bbn_D Ribosomal protein S4; s 44.2 10 0.00034 38.6 2.4 27 811-837 112-139 (201)
88 2cqz_A 177AA long hypothetical 44.2 11 0.00036 37.1 2.5 39 124-163 31-75 (177)
89 2xt9_B Putative signal transdu 43.9 11 0.00036 34.3 2.3 23 813-836 73-95 (115)
90 3po0_A Small archaeal modifier 42.9 18 0.0006 31.1 3.5 22 609-632 64-85 (89)
91 1gxc_A CHK2, CDS1, serine/thre 40.5 13 0.00043 35.5 2.4 24 813-836 103-128 (149)
92 2dqb_A Deoxyguanosinetriphosph 40.3 12 0.00039 41.5 2.3 90 61-161 15-111 (376)
93 3gw7_A Uncharacterized protein 39.7 18 0.00061 37.4 3.5 37 127-163 27-63 (239)
94 2kb3_A Oxoglutarate dehydrogen 38.8 12 0.0004 35.8 1.8 22 814-836 109-130 (143)
95 1g6g_A Protein kinase RAD53; b 38.1 16 0.00054 33.8 2.6 24 813-836 79-104 (127)
96 1r21_A Antigen KI-67; beta san 38.0 12 0.00042 34.5 1.8 24 813-836 75-98 (128)
97 1uht_A Expressed protein; FHA 37.2 10 0.00035 34.5 1.1 24 813-836 76-101 (118)
98 3kt9_A Aprataxin; FHA domain, 37.0 16 0.00053 33.3 2.2 23 815-837 66-90 (102)
99 3r8n_D 30S ribosomal protein S 36.0 4.7 0.00016 41.1 -1.5 26 812-837 119-145 (205)
100 1dmz_A Protein (protein kinase 35.2 12 0.0004 36.2 1.2 24 813-836 83-108 (158)
101 1mzk_A Kinase associated prote 35.0 14 0.00049 34.7 1.8 24 813-836 76-109 (139)
102 3els_A PRE-mRNA leakage protei 34.9 14 0.00047 35.9 1.6 24 813-836 117-142 (158)
103 1g3g_A Protien kinase SPK1; FH 34.8 20 0.0007 34.7 2.8 24 813-836 107-132 (164)
104 2g1e_A Hypothetical protein TA 33.0 23 0.0008 30.2 2.7 22 609-632 61-86 (90)
105 3oun_A Putative uncharacterize 32.4 19 0.00065 35.1 2.2 22 814-836 128-149 (157)
106 3u7z_A Putative metal binding 32.0 36 0.0012 31.0 3.7 23 815-837 71-96 (101)
107 1qu5_A Protein kinase SPK1; FH 31.6 14 0.00049 36.6 1.2 24 813-836 107-132 (182)
108 1nyr_A Threonyl-tRNA synthetas 31.3 12 0.00042 43.8 0.7 46 583-635 15-67 (645)
109 4dmb_A HD domain-containing pr 31.2 53 0.0018 33.3 5.3 122 104-243 14-149 (204)
110 2kfu_A RV1827 PThr 22; FHA dom 31.0 19 0.00064 35.2 1.9 23 813-836 117-139 (162)
111 2bps_A YUKD protein; ubiquitin 30.8 9.7 0.00033 33.4 -0.2 25 813-837 57-81 (81)
112 3elv_A PRE-mRNA leakage protei 29.5 20 0.00067 36.6 1.7 24 813-836 164-189 (205)
113 2hek_A Hypothetical protein; p 29.2 18 0.00063 39.7 1.6 38 125-162 50-88 (371)
114 1qf6_A THRRS, threonyl-tRNA sy 29.1 13 0.00046 43.6 0.5 45 584-635 14-65 (642)
115 2jpe_A Nuclear inhibitor of pr 27.7 33 0.0011 32.1 2.9 24 813-836 100-125 (140)
116 3rpf_C Molybdopterin convertin 27.5 40 0.0014 28.1 3.1 22 609-632 48-70 (74)
117 1rm6_C 4-hydroxybenzoyl-COA re 26.9 48 0.0017 32.2 4.0 40 784-823 5-59 (161)
118 1ndd_A NEDD8, protein (ubiquit 26.6 1.9E+02 0.0065 22.9 7.1 56 782-837 2-70 (76)
119 1v9f_A Ribosomal large subunit 26.4 14 0.00047 39.6 0.0 28 810-837 39-67 (325)
120 3tm8_A BD1817, uncharacterized 26.2 25 0.00085 37.6 2.0 40 122-161 162-206 (328)
121 3dwg_C 9.5 kDa culture filtrat 25.5 48 0.0016 28.6 3.3 22 609-632 64-89 (93)
122 2ff4_A Probable regulatory pro 22.9 31 0.0011 37.5 2.0 19 389-407 222-240 (388)
123 3a9j_A Ubiquitin; protein comp 22.9 2.4E+02 0.0082 22.3 7.0 56 782-837 2-70 (76)
124 3va4_A Mediator of DNA damage 21.9 35 0.0012 32.0 1.8 24 813-836 89-116 (132)
125 4he6_A Peptidase family U32; u 21.7 1.1E+02 0.0037 26.4 4.9 33 602-634 11-43 (89)
126 1nyr_A Threonyl-tRNA synthetas 21.2 40 0.0014 39.4 2.5 26 813-838 38-63 (645)
127 1ynb_A Hypothetical protein AF 21.2 74 0.0025 31.4 4.1 55 105-162 8-78 (173)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=2.6e-99 Score=837.00 Aligned_cols=354 Identities=38% Similarity=0.617 Sum_probs=285.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHH
Q 003224 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDE 178 (838)
Q Consensus 99 ~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~e 178 (838)
.+.+.+.+|+.||.++|.||+|++|+|||.||++||.||+++++ |.++++||||||+||||++|.++|++.||++
T Consensus 23 ~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~-----D~~~i~AALLHDvvEDt~~t~e~I~~~FG~~ 97 (393)
T 1vj7_A 23 TDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHL-----DAVTVACGFLHDVVEDTDITLDNIEFDFGKD 97 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTC-----CHHHHHHHHHTTHHHHSSCCHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcC-----CHHHHHHHHhhhHHhcCCCCHHHHHHHhCHH
Confidence 35678999999999999999999999999999999999999874 6899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHHHHHHH
Q 003224 179 VAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 258 (838)
Q Consensus 179 VA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~ 258 (838)
|+.||+||||+++++.. .....|+|++|||||||++|+||++|||||||||||++..+|+++|+++|+
T Consensus 98 Va~lV~gvTk~~~~~~~------------~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~iA~ 165 (393)
T 1vj7_A 98 VRDIVDGVTKLGKVEYK------------SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISR 165 (393)
T ss_dssp HHHHHHHHHHHC--------------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHHHHH
T ss_pred HHHHHHHHHhcccCCcc------------cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHHHHH
Confidence 99999999999887531 112458999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCcccccccccccccCCCCCccCccCCCCcccc
Q 003224 259 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTT 338 (838)
Q Consensus 259 ETl~IYAPLA~RLGl~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 338 (838)
||++||||||||||||+||||||||||+||+|+.|+.|.+.|.+
T Consensus 166 Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~------------------------------------ 209 (393)
T 1vj7_A 166 ETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNE------------------------------------ 209 (393)
T ss_dssp HHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHH------------------------------------
Confidence 99999999999999999999999999999999999999999975
Q ss_pred hhhhhhhHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCc
Q 003224 339 FDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYGYIPGM 418 (838)
Q Consensus 339 ~~~~~~~~k~ll~a~~~~d~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~L~~~l~~~~~~~~~~gi 418 (838)
.|.+|+.+++++. ..+++.|.+ .|+
T Consensus 210 ----------------------~r~~r~~~i~~i~----------------------~~l~~~L~~-----------~gi 234 (393)
T 1vj7_A 210 ----------------------KRREREALVDDIV----------------------TKIKSYTTE-----------QGL 234 (393)
T ss_dssp ----------------------THHHHHHHHHHHH----------------------HHHHHHHHT-----------TTC
T ss_pred ----------------------HHHHHHHHHHHHH----------------------HHHHHHHHh-----------cCC
Confidence 4778888888775 133344432 267
Q ss_pred eEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCCC
Q 003224 419 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKP 498 (838)
Q Consensus 419 ~~~I~gR~K~~ySI~~Km~Rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~ 498 (838)
.+.|+||+|++||||+||+||+.+|++|+|++||||||++ +.|||.++|+||+.|+|+|++|||||++||+
T Consensus 235 ~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~---------~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~ 305 (393)
T 1vj7_A 235 FGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRPMPGRFKDYIAAPKA 305 (393)
T ss_dssp CCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCBCTTCCEETTTSCCT
T ss_pred ceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC---------HHHHHHHHHHHHhcCCCCCCcccccccCCCc
Confidence 7899999999999999999999999999999999999985 8899999999999999999999999999999
Q ss_pred CCCceeEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhcccccCCccccccccc------cchHHHhccCCCCCCCC
Q 003224 499 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD------ESDIEASSSLSKDTDDH 570 (838)
Q Consensus 499 NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~------~~l~~~~~~~~~~~e~~ 570 (838)
||||||||+|.+|+| ++||||||..||.|||+||||||+||++.........++ ++|.+|++...++.||+
T Consensus 306 nGYqSlH~~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~~~ef~ 382 (393)
T 1vj7_A 306 NGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNGDAVDF 382 (393)
T ss_dssp TCCCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC-----------
T ss_pred CCcceeEEEEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999999999 999999999999999999999999998643210111222 33455665555556665
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=1.9e-42 Score=363.41 Aligned_cols=113 Identities=28% Similarity=0.341 Sum_probs=106.3
Q ss_pred EEEEeecChhHHHHHHHhcCCCCC----cccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCC
Q 003224 421 TLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNP 496 (838)
Q Consensus 421 ~I~gR~K~~ySI~~Km~Rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~P 496 (838)
.|+||+|+++||++||+|++.+++ +|+|++||||||.+ +.|||.++++||+.|.|.|.++||||++|
T Consensus 73 ~V~~RvKs~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~---------~~D~y~v~~~I~~~~~~~~~~~KDYIa~P 143 (255)
T 3l9d_A 73 FVTGRVKPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQF---------VDDVNDVLELLRQRKDMKVIQERDYINNL 143 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESS---------TTHHHHHHHHHHTCSSSEEEEEEEESCC-
T ss_pred eEEeEEcCHHHHHHHHHhcCCCccchhhhccccceEEEEEeC---------HHHHHHHHHHHHhcCCCceeeeeccccCC
Confidence 699999999999999999999987 79999999999985 78999999999999999999999999999
Q ss_pred CCCCCceeEEEEE-------cCCCcEEEEEEechhhHHHHHhhhhhhhccccc
Q 003224 497 KPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 542 (838)
Q Consensus 497 K~NGYqSLHt~V~-------~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 542 (838)
|+|||||||++|. ++.|.++||||||..||.|||+||++||+|+..
T Consensus 144 K~nGYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~~ 196 (255)
T 3l9d_A 144 KPSGYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHGE 196 (255)
T ss_dssp CCCSCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCceeEEEEEEcccccccCCCceEEEEEECCHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999998 557889999999999999999999999999953
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=3.2e-37 Score=319.44 Aligned_cols=153 Identities=26% Similarity=0.315 Sum_probs=123.3
Q ss_pred EEEEeecChhHHHHHHHhcCCCCC----cccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCC
Q 003224 421 TLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNP 496 (838)
Q Consensus 421 ~I~gR~K~~ySI~~Km~Rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~P 496 (838)
.|+||+|+++||++||.|++.+++ +|+|++||||||++ +.|||.++++||+.|.|.|.++||||++|
T Consensus 44 ~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~---------~~d~y~v~~~i~~~~~~~~~~~kDyI~~P 114 (226)
T 2be3_A 44 FVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQF---------VDDVKEVVDILHKRQDMRIIQERDYITHR 114 (226)
T ss_dssp EEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESC---------GGGHHHHHHHHHTCSSEEEEEEEETTTTC
T ss_pred eEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcC---------HHHHHHHHHHHHhccCCceeeecchhhcC
Confidence 699999999999999999999998 89999999999985 78999999999999999999999999999
Q ss_pred CCCCCceeEEEEE-------cCCCcEEEEEEechhhHHHHHhhhhhhhcccccCCcc--cc-------ccccccchHHHh
Q 003224 497 KPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL--QS-------ISSMDESDIEAS 560 (838)
Q Consensus 497 K~NGYqSLHt~V~-------~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~--~~-------~~~~~~~l~~~~ 560 (838)
|+||||||||+|. ++.|.++||||||..||.|||+||++||+||++.... .. ...+++++.+++
T Consensus 115 K~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~~~~~~l~~~a~~~~~~d~~m~~i~ 194 (226)
T 2be3_A 115 KASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQLDEEMGEIR 194 (226)
T ss_dssp CTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCCCceEEEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 5678899999999999999999999999999643211 00 112334455666
Q ss_pred ccCCCCCCCCCccccccccccc
Q 003224 561 SSLSKDTDDHNPLDTDLFQKYS 582 (838)
Q Consensus 561 ~~~~~~~e~~~~~~~dvftpkg 582 (838)
..+.++.+|++.++.++|..-|
T Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~ 216 (226)
T 2be3_A 195 DDIQEAQALFDPLSRKLNDGVG 216 (226)
T ss_dssp HHHHHHHHHCCC----------
T ss_pred HHHhhhHHHHHHhhHHHhhhcc
Confidence 6666667888888888885443
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=99.98 E-value=2.7e-33 Score=280.70 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHHhhcCCccc--cCcchhhHHHHHHHHHH-HcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhc
Q 003224 100 NDEQVQKAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (838)
Q Consensus 100 ~~~~l~kA~~fA~~aH~gQ~Rk--sGePYI~Hpl~VA~ILA-~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG 176 (838)
+.+.+.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++++ .|.++++||||||+||||.+|.++|++.||
T Consensus 5 d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~----~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG 80 (179)
T 3nqw_A 5 PSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACI----TDEGVLMAALLHDVVEDTDASFEDVEKLFG 80 (179)
T ss_dssp CCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCC----CCHHHHHHHHTTTHHHHSSCCHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCC----CCHHHHHHHHhhhHHhcCCCCHHHHHHHHC
Confidence 5678999999999999999998 59999999999999999 6643 268999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHH-HHH
Q 003224 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK-ARA 255 (838)
Q Consensus 177 ~eVA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ek-q~~ 255 (838)
++|+.||+||||++.++...+ ...|.+++|+ +|+||++||||||+||||+|..+|+++ ...
T Consensus 81 ~~Va~lV~gvtk~~~~~~~~~------------~~~q~e~~r~------~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~ 142 (179)
T 3nqw_A 81 PDVCGLVREVTDDKSLEKQER------------KRLQIENAAK------SSCRAKLIKLADKLDNLRDLQVNTPTGWTQE 142 (179)
T ss_dssp HHHHHHHHHTCCCTTSCHHHH------------HHHHHHSSTT------SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHH
T ss_pred HHHHHHHHHHHhccccCHHHH------------HHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHhhCCcccccHH
Confidence 999999999999988764321 1347788876 899999999999999999999987764 334
Q ss_pred HHHHhHHHHHHhhhhc--ChHHHHHHHHHHHHHh
Q 003224 256 VAQETLLIWCSLASRL--GLWALKAELEDLCFAV 287 (838)
Q Consensus 256 iA~ETl~IYAPLA~RL--Gl~~iK~ELEDLaF~~ 287 (838)
-+++.+..|.++++.| |=..+..+|.++.=+|
T Consensus 143 r~~~Y~~~~~~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 143 RRDQYFVWAKKVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4556666777777777 5567777787776554
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.97 E-value=4e-32 Score=272.07 Aligned_cols=147 Identities=30% Similarity=0.420 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHhhcCCcccc--CcchhhHHHHHHHHHH-HcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhc
Q 003224 100 NDEQVQKAIAFAKRAHHGQFRKT--GDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (838)
Q Consensus 100 ~~~~l~kA~~fA~~aH~gQ~Rks--GePYI~Hpl~VA~ILA-~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG 176 (838)
+.+++.+|+.||.++|.||+|++ |+|||.||++||.||+ +++. .|.++++||||||+||||++|.++|++.||
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~----~d~~~i~AALLHDvvEDt~~t~e~i~~~FG 78 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGI----TDIVVLQAALLHDTVEDTDTTLDEVELHFG 78 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCC----CCHHHHHHHHHTTHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCC----CCHHHHHHHHhhhHHhcCCCCHHHHHHHHC
Confidence 45789999999999999999987 9999999999999995 5542 378999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChH-----
Q 003224 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA----- 251 (838)
Q Consensus 177 ~eVA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~e----- 251 (838)
++|+.||+||||++.++...+ ...|.+++| .+|+||++||||||+||||+|..+||+
T Consensus 79 ~~Va~lV~gvTk~~~~~~~~~------------~~~q~e~~~------~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~ 140 (178)
T 3nr1_A 79 AQVRRLVEEVTDDKTLPKLER------------KRLQVEQAP------HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEH 140 (178)
T ss_dssp HHHHHHHHHTCCCTTSCHHHH------------HHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHH
T ss_pred HHHHHHHHHHHhccccchhhH------------HHHHHHHHH------hCCchhHHHHHHHHHHHHHHhhhCCccccCHH
Confidence 999999999999987754221 124667765 589999999999999999999988754
Q ss_pred HHHHHHHHhHHHHHHhh
Q 003224 252 KARAVAQETLLIWCSLA 268 (838)
Q Consensus 252 kq~~iA~ETl~IYAPLA 268 (838)
+..+|..|...|..-|.
T Consensus 141 r~~~Y~~~~~~v~~~l~ 157 (178)
T 3nr1_A 141 RVQEYFEWAAQVVKGLQ 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35677888877777653
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.79 E-value=5.8e-20 Score=161.12 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003224 777 VVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 777 dl~~~~v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
|||+++||||||+|+++.||.||||+||||+|| ++++| ++|||++|||+|+|++||+|||+|
T Consensus 2 ~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 2 DLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLT 67 (78)
T ss_dssp ----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEE
T ss_pred CCcCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEc
Confidence 689999999999999999999999999999999 77766 699999999999999999999986
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.23 E-value=9.2e-12 Score=112.19 Aligned_cols=58 Identities=29% Similarity=0.412 Sum_probs=51.3
Q ss_pred CeEEEEc-CCCCe------EeC-CCCCCHHHHHHHhC--CCCce--EE-------ECCEEeCCCccCCCCCEEEEeC
Q 003224 781 EVVIVCW-PNGEI------MRL-RSGSTAADAAMKVG--LEGKL--VL-------VNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 781 ~~v~Vft-P~G~i------~~L-p~GsT~~DfAy~ih--v~~~~--~~-------VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+-|.||| |+|+. +.| |.|||+.||||+|| ++..+ |. +|||.|+++|+|+|||+|+|++
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~ 86 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVK 86 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEE
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEe
Confidence 4678999 99985 889 99999999999999 77765 44 4999999999999999999974
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.04 E-value=1.7e-10 Score=98.10 Aligned_cols=56 Identities=43% Similarity=0.478 Sum_probs=51.0
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003224 783 VIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 783 v~VftP~G~i~~Lp~GsT~~DfAy~ih--v~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+.|+.|+|+.+++|.|+|+.|+|+.++ ++.++ ++|||+++|++++|++||.|||+|
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEE
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEE
Confidence 689999999999999999999999997 44444 699999999999999999999985
No 9
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.95 E-value=1.5e-10 Score=101.55 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=47.5
Q ss_pred cccccccc---CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCC
Q 003224 576 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 634 (838)
Q Consensus 576 dvftpkg~---lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~~ 634 (838)
.+|||+|+ ||.|+|+.+| +|++|+||+| ||+ +|||+++|++||+|||+|+++
T Consensus 9 ~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-----NG~--~v~L~~~L~~gd~VeIit~~~ 70 (78)
T 3hvz_A 9 FVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-----DGR--IVPIDYKVKTGEIIDVLTTKE 70 (78)
T ss_dssp EEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-----TTE--EECTTCBCCTTCBEEEEECC-
T ss_pred EEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEE-----CCE--EcCCCcccCCCCEEEEEccCc
Confidence 37899995 8999999876 7899999999 999 999999999999999999975
No 10
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=98.77 E-value=7.4e-09 Score=91.54 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=52.6
Q ss_pred CCeEEEEcCCCCeEeCCC-CCCHHHHHHHhC--CCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003224 780 GEVVIVCWPNGEIMRLRS-GSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 780 ~~~v~VftP~G~i~~Lp~-GsT~~DfAy~ih--v~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
...+-|..|+|+++++|. |+|+.|||+.|| ++.++ ++|||++++|+++|++|+.||++|
T Consensus 9 ~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 9 SKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLK 72 (88)
T ss_dssp CCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECS
T ss_pred CCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEe
Confidence 355678889999999998 999999999997 55554 699999999999999999999986
No 11
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.61 E-value=1.4e-08 Score=112.95 Aligned_cols=58 Identities=28% Similarity=0.304 Sum_probs=52.8
Q ss_pred CeEEEEc---------CCC----CeEeCCCCCCHHHHHHHhC--CCCce--E--EECCEEeCCCccCCCCCEEEEeC
Q 003224 781 EVVIVCW---------PNG----EIMRLRSGSTAADAAMKVG--LEGKL--V--LVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 781 ~~v~Vft---------P~G----~i~~Lp~GsT~~DfAy~ih--v~~~~--~--~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+-|+||| |+| +.+.||.||||.||||+|| ++..+ | .+||+.|+++|+|+|||+|+|+|
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEE
T ss_pred CCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEe
Confidence 5788999 999 9999999999999999999 66655 4 66999999999999999999986
No 12
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=97.68 E-value=1e-05 Score=73.02 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=46.1
Q ss_pred ccc-cccc---------C-CCCCceeee-------cCCceeEEEEE--EEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003224 577 LFQ-KYSS---------L-KMGHPVIRV-------EGSNLLAAVII--RVEKGGRELLVAVSFGLAASEVVADRRPSFQ 635 (838)
Q Consensus 577 vft-pkg~---------l-p~G~tvl~~-------vG~~c~gAkV~--~v~~nGr~~lVpls~~L~~GD~VeI~ts~~p 635 (838)
||| |+|. | |.|+||.|| +|.+|..|.|- ++.+||+ -|+++++|++||+|+|++.+.+
T Consensus 14 VYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~q--rVgldh~L~d~DVV~Iv~~~~~ 90 (93)
T 2eki_A 14 IYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQ--KVGKDHTLEDEDVIQIVKKSGP 90 (93)
T ss_dssp EEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSE--EECSSCCCCSSEEECEEECCSC
T ss_pred EEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCE--ECCCCcEecCCCEEEEEeCCCC
Confidence 677 7773 6 889998655 99999999862 2344788 7999999999999999987654
No 13
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.64 E-value=3.5e-05 Score=66.66 Aligned_cols=48 Identities=27% Similarity=0.249 Sum_probs=42.0
Q ss_pred CCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003224 790 GEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 790 G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
...+++|.|+|..|+.-.+|+.... +.|||++||.+..++ ||.|||++
T Consensus 12 ~~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVE-VDRVKVLR 61 (74)
T ss_dssp EEEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSC-CCCEEECS
T ss_pred ceeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCC-CCEEEEEE
Confidence 3448999999999999999966644 699999999999886 99999974
No 14
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=97.62 E-value=1.8e-05 Score=72.00 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=44.4
Q ss_pred CeEEEEcCCCCe--EeCCCCCCHHHHHHHhCCC---------CceEEECCEEeCCCccCCCCCEEEEe
Q 003224 781 EVVIVCWPNGEI--MRLRSGSTAADAAMKVGLE---------GKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 781 ~~v~VftP~G~i--~~Lp~GsT~~DfAy~ihv~---------~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+++|---.+..+ +++|.|+|+.|+.-+.|+. ...+-|||++||+++.|++||+|||.
T Consensus 16 ~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 16 EIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEEC
T ss_pred EEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEE
Confidence 455553333333 4789999999999999842 23479999999999999999999996
No 15
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=97.58 E-value=4e-05 Score=66.39 Aligned_cols=53 Identities=34% Similarity=0.471 Sum_probs=46.2
Q ss_pred EcCCCCeEeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003224 786 CWPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 786 ftP~G~i~~Lp~GsT~~DfAy~ihv~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+..+|+.+++|.|+|..|+--.+++... .+-|||++||.+++|++||.|+|+.
T Consensus 18 ~~~n~~~~~~~~~~Tv~dLl~~L~~~~~~v~VavNg~~v~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 18 GRNIEKEIEWREGMKVRDILRAVGFNTESAIAKVNGKVVLEDDEVKDGDFVEVIP 72 (77)
T ss_dssp TCCCCCCCCCCSSCCHHHHHHTTTCSSCSSCEEETTEEECSSSCCCSSCCCBCSC
T ss_pred cccCCEEEECCCCCcHHHHHHHhCCCCcCEEEEECCEECCCCCCcCCCCEEEEEc
Confidence 3568889999999999999999985543 3799999999999999999999973
No 16
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=97.46 E-value=8.7e-05 Score=64.84 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=46.1
Q ss_pred cCCCCeEeCC--CCCCHHHHHHHhCCC-Cc-e-EEECCEEeCCC----ccCCCCCEEEEeC
Q 003224 787 WPNGEIMRLR--SGSTAADAAMKVGLE-GK-L-VLVNGQLVLPN----TELKDGDIVEVRV 838 (838)
Q Consensus 787 tP~G~i~~Lp--~GsT~~DfAy~ihv~-~~-~-~~VNg~lvpl~----~~L~~GD~VeI~t 838 (838)
+=||+-+++| .|+|..|+.-.+++. .+ + |-|||.+||-+ +.|++||.|||++
T Consensus 4 ~vNGe~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 4 TVNGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EETTEEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred EECCEEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 4489999999 999999999999977 54 3 69999999997 9999999999985
No 17
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=97.41 E-value=0.00013 Score=61.19 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=45.3
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCC----CccCCCCCEEEEeC
Q 003224 787 WPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLP----NTELKDGDIVEVRV 838 (838)
Q Consensus 787 tP~G~i~~Lp~GsT~~DfAy~ihv~~~--~~~VNg~lvpl----~~~L~~GD~VeI~t 838 (838)
+=||+-+++|.|+|..|+--.+++... .+-|||++||. +++|++||.|+|++
T Consensus 4 ~vNg~~~~~~~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 4 LFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EESSCEECCCTTCCHHHHHHHHTCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EECCEEEEcCCCCcHHHHHHHcCCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 448999999999999999999985543 36999999998 89999999999973
No 18
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=97.36 E-value=0.00015 Score=62.53 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=44.6
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003224 787 WPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 838 (838)
Q Consensus 787 tP~G~i~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 838 (838)
+=||+-+++ .|+|..|+.-.+++..+. +-|||.+||-+ +.|++||.|||++
T Consensus 4 ~vNG~~~e~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 4 TINGEQREV-QSASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EETTEEECC-CCSBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 347999999 999999999999966543 69999999995 8999999999985
No 19
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.36 E-value=0.0002 Score=63.87 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=46.5
Q ss_pred EcCCCCeEeCCCC-CCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003224 786 CWPNGEIMRLRSG-STAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 838 (838)
Q Consensus 786 ftP~G~i~~Lp~G-sT~~DfAy~ihv~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 838 (838)
++=||+-+++|.| +|..|+--.+++.... +-|||++||. +++|++||.|||++
T Consensus 23 I~vNGe~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 23 LQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEETTEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEECCEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 5669999999998 9999999999965543 6999999998 79999999999974
No 20
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=97.33 E-value=6.9e-05 Score=63.27 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=44.0
Q ss_pred cccccccc---CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCC
Q 003224 576 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 634 (838)
Q Consensus 576 dvftpkg~---lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~~ 634 (838)
.++.|.|. +|.|.|+.++ ++.++++|+| ||+ ++|+++.|+.||.|||+|...
T Consensus 4 ~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~v-----Ng~--lvdl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 4 MVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKV-----NHK--LVPLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEE-----TTE--ECCTTCBCCSSSBEEEEECCC
T ss_pred EEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEE-----CCE--EeCCCcCcCCCCEEEEEECCC
Confidence 45677774 7999998765 3577999999 999 999999999999999998754
No 21
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.17 E-value=0.00038 Score=59.17 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=43.8
Q ss_pred CCCCe----EeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003224 788 PNGEI----MRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 788 P~G~i----~~Lp~GsT~~DfAy~ihv~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
=||+- +++|.|+|..|+--.+++... .+-|||++||.++.|++||.|+|++
T Consensus 9 vNg~~~~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 9 VITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp EEETTEEEEEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTSBCCTTCEEEEEE
T ss_pred EeCccCceeEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcccCCCCCEEEEEe
Confidence 35666 999999999999999985443 3699999999999999999999973
No 22
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=97.10 E-value=0.00046 Score=57.53 Aligned_cols=51 Identities=41% Similarity=0.591 Sum_probs=43.8
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCCC----ccCCCCCEEEEeC
Q 003224 787 WPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPN----TELKDGDIVEVRV 838 (838)
Q Consensus 787 tP~G~i~~Lp~GsT~~DfAy~ihv~~~--~~~VNg~lvpl~----~~L~~GD~VeI~t 838 (838)
+=||+-+++ .|+|..|+--.+++... .+-|||++||.+ ++|++||.|+|++
T Consensus 3 ~vNg~~~~~-~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 3 WLNGEPRPL-EGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EETTEEECC-TTCCHHHHHHHHTBCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 348999999 99999999999985544 369999999976 9999999999973
No 23
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=96.98 E-value=0.00025 Score=62.34 Aligned_cols=53 Identities=6% Similarity=-0.068 Sum_probs=44.6
Q ss_pred ccccccccC---CC-CCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003224 576 DLFQKYSSL---KM-GHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 635 (838)
Q Consensus 576 dvftpkg~l---p~-G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~~p 635 (838)
.+.-|+|.. |. |.|+.++ ++.+|++|+| ||+ +++|+++|+.|+.||++|...|
T Consensus 13 ~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~d~~ve~vt~~~~ 76 (88)
T 1wwt_A 13 KVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKV-----NNV--VWDLDRPLEEDCTLELLKFEDE 76 (88)
T ss_dssp EEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEE-----SSS--EECSSSCCCSSEEEEECSSCCS
T ss_pred EEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEE-----CCE--EECCCcCcCCCCEEEEEeCCCH
Confidence 345577854 86 8888765 5788999999 999 9999999999999999998754
No 24
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=96.60 E-value=0.0015 Score=55.66 Aligned_cols=48 Identities=21% Similarity=0.110 Sum_probs=39.2
Q ss_pred CeEeCCCCCCHHHHHHHhCC-----CCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003224 791 EIMRLRSGSTAADAAMKVGL-----EGK--LVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 791 ~i~~Lp~GsT~~DfAy~ihv-----~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
.-+++|.|+|..|.--.++. ..- .+-|||++|+.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEEC
Confidence 34678999999998777742 222 4799999999999999999999973
No 25
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=96.39 E-value=0.00088 Score=68.65 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=45.6
Q ss_pred ccccccc---CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003224 577 LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 635 (838)
Q Consensus 577 vftpkg~---lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~~p 635 (838)
+.+|+|. +|.|.|+.++ ++.+|++|+| ||+ +++|+++|++|+.||++|...+
T Consensus 4 I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~~~~ve~it~~~~ 65 (224)
T 1tke_A 4 ITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRV-----NGE--LVDACDLIENDAQLSIITAKDE 65 (224)
T ss_dssp EECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEE-----TTE--EEETTCCBCSCEEEEEECTTSH
T ss_pred EEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEE-----CCE--EeccceEcCCCCeEEEEecCch
Confidence 4568884 7999999876 5788999999 999 9999999999999999998764
No 26
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=96.14 E-value=0.0043 Score=55.75 Aligned_cols=47 Identities=34% Similarity=0.461 Sum_probs=38.6
Q ss_pred CeEeCCCCCCHHHHHHHhCC----------------CCc-eEEECCEEeCCCccCCCCCEEEEe
Q 003224 791 EIMRLRSGSTAADAAMKVGL----------------EGK-LVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 791 ~i~~Lp~GsT~~DfAy~ihv----------------~~~-~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+.+++|.|+|..|.--.+.. ... .+.|||++|+++++|++||.|+|+
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEE
Confidence 45678999999997777641 133 379999999999999999999997
No 27
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=96.09 E-value=0.0062 Score=53.43 Aligned_cols=46 Identities=24% Similarity=0.200 Sum_probs=38.0
Q ss_pred eEeCCCCCCHHHHHHHhC-----CC------------CceEEECCEEeCCCccCCCCCEEEEe
Q 003224 792 IMRLRSGSTAADAAMKVG-----LE------------GKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ih-----v~------------~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
.+++|.|+|..|.--.+. +. ...+.|||+.|+++++|++||.|.|+
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALF 83 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEE
Confidence 468999999999877663 11 13479999999999999999999987
No 28
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.75 E-value=0.0012 Score=73.40 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=36.6
Q ss_pred CCCCCcee-------eecCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 003224 584 LKMGHPVI-------RVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 633 (838)
Q Consensus 584 lp~G~tvl-------~~vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~ 633 (838)
||.|+|+. +.+|++|++|.- ..||+ .|+++|.|++||+|+|+|++
T Consensus 345 l~~G~t~~d~a~~iH~d~~~~f~~a~~---~~~~~--~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 345 MKKGSTPRDLAFKVHTDLGKGFLYAIN---ARTKR--RVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp EETTCCHHHHHHHHCHHHHHTEEEEEE---TTTCS--BCCTTCCCCTTEEEEEEEC-
T ss_pred eCCCCCHHHHHHHHhHHHHhhhhhhHH---hcCCE--EcCCCccccCCCEEEEEeCC
Confidence 68998884 458999999931 12788 68999999999999999875
No 29
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=95.73 E-value=0.014 Score=49.98 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHhCC-----------CCceEEECCEEeCCCccCCCCCEEEEe
Q 003224 796 RSGSTAADAAMKVGL-----------EGKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 796 p~GsT~~DfAy~ihv-----------~~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
|.|+|..|.--.++. +...+-|||++|+++++|++||.|+|+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEe
Confidence 688999998777751 223479999999999999999999997
No 30
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.01 Score=65.65 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=35.3
Q ss_pred CCCC-CCHHHHHHHhC--CCC--ce-------EEECCEEeCCCccCCCCCEEEEeC
Q 003224 795 LRSG-STAADAAMKVG--LEG--KL-------VLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 795 Lp~G-sT~~DfAy~ih--v~~--~~-------~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
+++| ||+-|||..|| ... +. +|-+||.|-.+|.|+|||||+|++
T Consensus 320 ~~a~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 320 LRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp EBTTBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEE
T ss_pred ccCCCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEe
Confidence 4455 99999999999 222 22 466889999999999999999975
No 31
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=94.83 E-value=0.036 Score=48.28 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=37.4
Q ss_pred eEeCCCCCCHHHHHHHhC--C---------------CCceEEECCEEeC----CCccCCCCCEEEEeC
Q 003224 792 IMRLRSGSTAADAAMKVG--L---------------EGKLVLVNGQLVL----PNTELKDGDIVEVRV 838 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ih--v---------------~~~~~~VNg~lvp----l~~~L~~GD~VeI~t 838 (838)
-+++|.|+|..|+--.+. . ....+-|||+.++ ++++|++||.|+|+.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 456788899999776664 1 2234799999998 899999999999973
No 32
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.37 E-value=0.11 Score=44.24 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=36.1
Q ss_pred eEeCCCCCCHHHHHHHhCC--------CCceEEECCEE-eCCCccCCCCCEEEEe
Q 003224 792 IMRLRSGSTAADAAMKVGL--------EGKLVLVNGQL-VLPNTELKDGDIVEVR 837 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ihv--------~~~~~~VNg~l-vpl~~~L~~GD~VeI~ 837 (838)
.+++ .|+|..|.--.+.. ....+-|||+. +..+++|++||.|+|+
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 4667 79999998777752 22336999999 7799999999999997
No 33
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.28 E-value=0.14 Score=56.34 Aligned_cols=56 Identities=23% Similarity=0.226 Sum_probs=42.3
Q ss_pred eEEEEcC--C-CCeEeCCCCCCHHHHHHHhC----CCCceEEE-----------------CC--EEeCCCccCCCCCEEE
Q 003224 782 VVIVCWP--N-GEIMRLRSGSTAADAAMKVG----LEGKLVLV-----------------NG--QLVLPNTELKDGDIVE 835 (838)
Q Consensus 782 ~v~VftP--~-G~i~~Lp~GsT~~DfAy~ih----v~~~~~~V-----------------Ng--~lvpl~~~L~~GD~Ve 835 (838)
-+.+||- + -+-..+++|+|+-|+|..|| -|=..|.| .| |++--+|.++|||||+
T Consensus 284 li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~ 363 (368)
T 2dby_A 284 LLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIY 363 (368)
T ss_dssp EEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEE
T ss_pred CEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEE
Confidence 4556772 1 24577899999999999999 22234444 26 8889999999999999
Q ss_pred Ee
Q 003224 836 VR 837 (838)
Q Consensus 836 I~ 837 (838)
++
T Consensus 364 ~~ 365 (368)
T 2dby_A 364 VL 365 (368)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 34
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=91.90 E-value=0.19 Score=44.30 Aligned_cols=42 Identities=29% Similarity=0.327 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHhC--C------------CC-----ceEEECCEEeC----CCccCCCCCEEEEe
Q 003224 796 RSGSTAADAAMKVG--L------------EG-----KLVLVNGQLVL----PNTELKDGDIVEVR 837 (838)
Q Consensus 796 p~GsT~~DfAy~ih--v------------~~-----~~~~VNg~lvp----l~~~L~~GD~VeI~ 837 (838)
+.|+|+.|.--.+. . ++ ..+.|||+.|+ ++|+|++||.|.|+
T Consensus 23 ~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 23 ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 46899999766663 1 11 23799999999 79999999999986
No 35
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=90.25 E-value=0.23 Score=44.58 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=34.2
Q ss_pred EeCCCCCCHHHHHHHhC-----CCC-----------c-------eEEECCEEe----CCCccCCCCCEEEEe
Q 003224 793 MRLRSGSTAADAAMKVG-----LEG-----------K-------LVLVNGQLV----LPNTELKDGDIVEVR 837 (838)
Q Consensus 793 ~~Lp~GsT~~DfAy~ih-----v~~-----------~-------~~~VNg~lv----pl~~~L~~GD~VeI~ 837 (838)
++++ |+|..|.--.+. +.. - .+.|||+.| .++|+|++||.|+|+
T Consensus 23 ~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 23 LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 3555 899999766663 111 1 579999999 689999999999997
No 36
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=90.05 E-value=0.16 Score=51.79 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=24.7
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEeC
Q 003224 812 GKLVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 812 ~~~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
.-.++|||++++|+++|++|+.||++|
T Consensus 35 ~vaakvNg~l~dL~~~l~~~~~ve~it 61 (224)
T 1tke_A 35 CIAGRVNGELVDACDLIENDAQLSIIT 61 (224)
T ss_dssp CCEEEETTEEEETTCCBCSCEEEEEEC
T ss_pred eEEEEECCEEeccceEcCCCCeEEEEe
Confidence 356799999999999999999999986
No 37
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=89.91 E-value=0.23 Score=54.68 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=42.1
Q ss_pred eEEEEcCCC---CeEeCCCCCCHHHHHHHhC--C--CCceEEE-----------------CC--EEeCCCccCCCCCEEE
Q 003224 782 VVIVCWPNG---EIMRLRSGSTAADAAMKVG--L--EGKLVLV-----------------NG--QLVLPNTELKDGDIVE 835 (838)
Q Consensus 782 ~v~VftP~G---~i~~Lp~GsT~~DfAy~ih--v--~~~~~~V-----------------Ng--~lvpl~~~L~~GD~Ve 835 (838)
-+.+||-.- +-..+++|+|+-|+|..|| + |=..|.| -| |++--+|.++|||||+
T Consensus 279 li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~ 358 (363)
T 1jal_A 279 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMH 358 (363)
T ss_dssp EEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEE
T ss_pred CEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEE
Confidence 456777222 4578999999999999999 2 2233444 26 8889999999999999
Q ss_pred Ee
Q 003224 836 VR 837 (838)
Q Consensus 836 I~ 837 (838)
++
T Consensus 359 f~ 360 (363)
T 1jal_A 359 FR 360 (363)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 38
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=88.67 E-value=0.48 Score=48.73 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 100 ~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
..+.++++..|+.+.+.+. .+..-+.|...|+.+...+....+....-..+||||||+..
T Consensus 3 ~~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 3 EQAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp CHHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 3567899999998887643 23344889999887654332212223345778999999985
No 39
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=87.72 E-value=0.42 Score=48.12 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccc
Q 003224 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA 164 (838)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT 164 (838)
.+.+.++..+......+. ....-+.|.+.|+.+...+....+....-..+||||||+....
T Consensus 4 ~~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 4 EEIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 356777777776665421 1222378999988776443221122223467999999997653
No 40
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=87.18 E-value=0.66 Score=45.82 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=35.6
Q ss_pred eEeCCCCCCHHHHHHHhCC---------------CCc-eEEECCEEeCC----CccCCCCCEEEEe
Q 003224 792 IMRLRSGSTAADAAMKVGL---------------EGK-LVLVNGQLVLP----NTELKDGDIVEVR 837 (838)
Q Consensus 792 i~~Lp~GsT~~DfAy~ihv---------------~~~-~~~VNg~lvpl----~~~L~~GD~VeI~ 837 (838)
-++++. +|..|.--.++. ... .+.|||++|+. +|+|++||.|+|+
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 456774 999997766641 123 37999999999 9999999999997
No 41
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=85.57 E-value=0.49 Score=52.74 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=41.2
Q ss_pred eEEEEcCC---CCeEeCCCCCCHHHHHHHhC--CCC--ceE-----------------EECC--EEeCCCccCCCCCEEE
Q 003224 782 VVIVCWPN---GEIMRLRSGSTAADAAMKVG--LEG--KLV-----------------LVNG--QLVLPNTELKDGDIVE 835 (838)
Q Consensus 782 ~v~VftP~---G~i~~Lp~GsT~~DfAy~ih--v~~--~~~-----------------~VNg--~lvpl~~~L~~GD~Ve 835 (838)
-+.+||-. =+-..+++|+|+-|+|..|| +.- ..| |=.| |.+--+|.++|||||+
T Consensus 305 li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~ 384 (396)
T 2ohf_A 305 LEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIF 384 (396)
T ss_dssp EEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEE
T ss_pred CEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEE
Confidence 34566632 14577899999999999999 222 222 2234 8999999999999999
Q ss_pred Ee
Q 003224 836 VR 837 (838)
Q Consensus 836 I~ 837 (838)
++
T Consensus 385 f~ 386 (396)
T 2ohf_A 385 FK 386 (396)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 42
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=84.32 E-value=0.88 Score=40.67 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=33.7
Q ss_pred EeCC--CCCCHHHHHHHhC--C-C----------------CceEEECCEEeC----CCccCCCCCEEEEe
Q 003224 793 MRLR--SGSTAADAAMKVG--L-E----------------GKLVLVNGQLVL----PNTELKDGDIVEVR 837 (838)
Q Consensus 793 ~~Lp--~GsT~~DfAy~ih--v-~----------------~~~~~VNg~lvp----l~~~L~~GD~VeI~ 837 (838)
+++| .|+|..|.--.+. . + ...+.|||+.+. ++|+|++||.|.|+
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 3567 7999999766652 1 1 113799999764 89999999999886
No 43
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=84.22 E-value=0.79 Score=47.00 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 97 ~~~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
+.++...+.++..+......++ ....-+.|.+.|+.....+....+....-..+||||||+..
T Consensus 5 ~~~~~~~i~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 5 PMITETQLTAIQTYALQKLAHD---HSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp -CCCHHHHHHHHHHHHTSSTTC---CSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHHHhcc---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 4456778888888887765532 12223789999887764432211222234569999999975
No 44
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=82.37 E-value=0.83 Score=50.72 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=40.2
Q ss_pred CeEEEEcCC---CCeEeCCCCCCHHHHHHHhC----CCCceEEEC-----------------C--EEeCCCccCCCCCEE
Q 003224 781 EVVIVCWPN---GEIMRLRSGSTAADAAMKVG----LEGKLVLVN-----------------G--QLVLPNTELKDGDIV 834 (838)
Q Consensus 781 ~~v~VftP~---G~i~~Lp~GsT~~DfAy~ih----v~~~~~~VN-----------------g--~lvpl~~~L~~GD~V 834 (838)
+-+.+||-. -+-..+++|+||-++|+.|| -|=..|.|= | |+.-=+|.++|||+|
T Consensus 306 ~l~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~ 385 (392)
T 1ni3_A 306 NLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIA 385 (392)
T ss_dssp TEEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEE
Confidence 345667622 25678999999999999999 222333221 3 446678999999999
Q ss_pred EEe
Q 003224 835 EVR 837 (838)
Q Consensus 835 eI~ 837 (838)
.++
T Consensus 386 ~f~ 388 (392)
T 1ni3_A 386 HWK 388 (392)
T ss_dssp ECC
T ss_pred EEE
Confidence 875
No 45
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=79.97 E-value=0.57 Score=40.12 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.3
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||+ +||.++.|+.||.|+|++.
T Consensus 52 Ng~--~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 52 NGK--VVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp TTE--EECSSSCCCSSCCCBCSCC
T ss_pred CCE--ECCCCCCcCCCCEEEEEcc
Confidence 899 9999999999999999864
No 46
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=78.91 E-value=1.2 Score=39.07 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.9
Q ss_pred eEEECCEEeCCCccCCCCCEEEEe
Q 003224 814 LVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 814 ~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
.|+|||+.+..++.|+.||+|+|.
T Consensus 27 ~V~VNg~~~~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 27 AVWLNGSCAKASKEVKAGDTISLH 50 (92)
T ss_dssp CCEETTEECCTTCBCCTTCEEEEC
T ss_pred cEEECCEEcCCCCCcCCCCEEEEE
Confidence 489999999999999999999884
No 47
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=78.37 E-value=0.59 Score=40.12 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=30.7
Q ss_pred cCCCCCceeee---cCCc--eeEEEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003224 583 SLKMGHPVIRV---EGSN--LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 583 ~lp~G~tvl~~---vG~~--c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
++|.|.|+-+. .|-. -+...| ||+ +||.+..++ ||.|||++.
T Consensus 16 ev~~g~Tv~dLL~~Lgl~~~~VvV~v-----NG~--~v~~d~~l~-GD~VeIv~~ 62 (74)
T 2l32_A 16 AVDDDGTYADLVRAVDLSPHEVTVLV-----DGR--PVPEDQSVE-VDRVKVLRL 62 (74)
T ss_dssp ECSTTCSHHHHHHTTCCCSSCCCEEC-----CCC--CCCTTSSSC-CCCEEECSS
T ss_pred EcCCCCcHHHHHHHcCCCcceEEEEE-----CCE--ECCHHHCCC-CCEEEEEEe
Confidence 68999998554 3422 222333 899 999999887 999999865
No 48
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=76.77 E-value=0.5 Score=52.63 Aligned_cols=25 Identities=4% Similarity=0.085 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHh
Q 003224 738 INNKVRLLRTMLRWEEQLRSEASLR 762 (838)
Q Consensus 738 ~~~k~~wlr~~lewq~e~~~~~~~~ 762 (838)
++++++|||+|+|||++..|+.+|+
T Consensus 358 ~~~~~~wl~~ll~~~~~~~~~~ef~ 382 (393)
T 1vj7_A 358 QKVGMNWIKELVELQDASNGDAVDF 382 (393)
T ss_dssp -----CHHHHHHHC-----------
T ss_pred hHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3568999999999999998888886
No 49
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=76.42 E-value=3.6 Score=42.16 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
.+.++++..|+.+.+.+. .+..-+.|.+.|+.+...+....+....-..+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKD---ASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp HHHHHHHHHHHHHHTTSS---SCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHhhcC---CCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 467899999999887653 23345889999988766554333333345668999999986
No 50
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=76.41 E-value=0.76 Score=41.63 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=20.6
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||+ +||+++.|+.||.|||.+.
T Consensus 64 ng~--~v~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 64 FSR--PIKLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp EEC--SCCTTCBCCTTCEEEECCC
T ss_pred cCE--ECCCCccCCCCCEEEEEec
Confidence 789 9999999999999999776
No 51
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=75.10 E-value=3.5 Score=41.56 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=26.9
Q ss_pred CcchhhHHHHHHHHHHHcC------CCCCCChhhHHHHhhhhcccc
Q 003224 123 GDPYLTHCIHTGRILAMLI------PSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~------~~~g~~D~dtI~AALLHDvVE 162 (838)
++....|.+.||.+...+. ...+.+..-++.+|||||+.|
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E 74 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASE 74 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTH
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhccccc
Confidence 5778899999986643221 001233346788999999988
No 52
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=73.16 E-value=1.5 Score=36.25 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=19.4
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003224 609 GGRELLVAV----SFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpl----s~~L~~GD~VeI~ts 632 (838)
||+ +||- ++.|+.||.|+|++.
T Consensus 37 N~~--~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 37 NQQ--IVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp TTE--EECHHHHTTCCCCTTEEECEEES
T ss_pred CCE--ECCchhcCCcCCCCCCEEEEEee
Confidence 899 8997 789999999999853
No 53
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=72.33 E-value=1.8 Score=36.37 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||. +||-+..|+.||.|+|++.
T Consensus 45 N~~--~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 45 NGQ--IVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp TTE--ECCTTSBCCTTCEEEEEEC
T ss_pred CCE--ECCCcccCCCCCEEEEEec
Confidence 899 9999999999999999754
No 54
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=71.91 E-value=2.1 Score=40.59 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.0
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEe
Q 003224 812 GKLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 812 ~~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
...|+|||+.+..++.|+.||+|+|.
T Consensus 33 ~G~V~VNG~~vk~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 33 GGKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_dssp TTCEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCcEEECCEEcCCCCEeCCCCEEEEE
Confidence 34589999999999999999999884
No 55
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=71.91 E-value=3.1 Score=37.30 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
.+++|||+.+.-.++|++||+|.|
T Consensus 69 nGt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 69 NGVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp SCCEETTEECSSEEECCTTCCEEE
T ss_pred CCeEECCEECCCCeECCCCCEEEE
Confidence 357999999988789999999986
No 56
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=71.06 E-value=2.5 Score=37.47 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=18.9
Q ss_pred CCeeEEEec----ccccCCCCeEEEcC
Q 003224 609 GGRELLVAV----SFGLAASEVVADRR 631 (838)
Q Consensus 609 nGr~~lVpl----s~~L~~GD~VeI~t 631 (838)
||+ +||- ++.|+.||.|||++
T Consensus 58 Ng~--iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 58 NKE--IIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp TTE--EECGGGTTTSBCCSSSEEEEEE
T ss_pred CCE--ECChhhcCCcCCCCCCEEEEEc
Confidence 899 9997 68999999999975
No 57
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=67.79 E-value=1.8 Score=37.44 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=20.1
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003224 609 GGRELLVAVS----FGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls----~~L~~GD~VeI~ts 632 (838)
||. +||=+ +.|+.||.|||++.
T Consensus 40 Ng~--iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 40 NGE--VLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp TTE--ECCTTHHHHCEECSSBCEEECCC
T ss_pred CCE--ECChHHcCcccCCCCCEEEEEee
Confidence 899 99986 89999999999876
No 58
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=67.70 E-value=3.1 Score=39.05 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.9
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003224 814 LVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 814 ~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
+++|||+.|.-.++|++||+|.|
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEE
T ss_pred CEEECCEEcCCcEECCCCCEEEE
Confidence 57999999987799999999986
No 59
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=67.41 E-value=3.2 Score=35.35 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.0
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003224 609 GGRELLVAVS----FGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls----~~L~~GD~VeI~ts 632 (838)
||. +||-+ +.|+.||.|||++.
T Consensus 36 Ng~--iVpr~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 36 NYD--VVPRGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp SSS--EECHHHHTTCBCCTTCEEEEECC
T ss_pred CCE--ECChHHcCcccCCCCCEEEEEcc
Confidence 899 99986 79999999999876
No 60
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=66.67 E-value=3.3 Score=38.17 Aligned_cols=24 Identities=46% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEECCEEe----CCCccCCCCCEEEEe
Q 003224 814 LVLVNGQLV----LPNTELKDGDIVEVR 837 (838)
Q Consensus 814 ~~~VNg~lv----pl~~~L~~GD~VeI~ 837 (838)
.|.|||+-+ -++|+|++||.|.++
T Consensus 69 lVLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 69 LVLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp EEEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred EEEECCeeeeccCCcccCCCCcCEEEEe
Confidence 479999988 589999999999886
No 61
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=65.77 E-value=7.7 Score=39.37 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHc-CCCCCCChhhHHHHhhhhccccc
Q 003224 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDD 163 (838)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l-~~~~g~~D~dtI~AALLHDvVED 163 (838)
.+.+.++..+......++ ....-+.|.+.|+.....+ ....+.......+||||||+...
T Consensus 4 ~~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 4 RMKIKKAYEYMKSFHQHD---TTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHHTTTC---SSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 357788888887776532 1223478999998875433 21112223456799999999874
No 62
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=65.33 E-value=4.1 Score=34.13 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||+ +|+.++.|+.||.|+|+..
T Consensus 52 Ng~--~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 52 NEE--FVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp TTE--EECTTSEECTTCEEEEECS
T ss_pred CCE--ECCCCCCcCCCCEEEEECC
Confidence 899 9999999999999999754
No 63
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=62.71 E-value=5.8 Score=39.82 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcc
Q 003224 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160 (838)
Q Consensus 103 ~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDv 160 (838)
.+.++..+......+ ......+.|.+.|+.+...+....|.......+||||||+
T Consensus 14 l~~~~~~~v~~~~~~---~~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDY---DDPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTC---CCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 466777887776542 2233447899998876543321111223456799999999
No 64
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=61.22 E-value=4.5 Score=39.06 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.4
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003224 814 LVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 814 ~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
+++|||+.|.-.++|++||+|.|
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 46999999987789999999976
No 65
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=59.20 E-value=8.1 Score=31.59 Aligned_cols=22 Identities=14% Similarity=-0.108 Sum_probs=19.7
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003224 609 GGRELLVAVS----FGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls----~~L~~GD~VeI~ts 632 (838)
||+ +||-+ +.|+.||.|+|++.
T Consensus 35 N~~--~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 35 NEE--AFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTE--EEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCE--ECCccccCCcCCCCCCEEEEEee
Confidence 899 99977 99999999999864
No 66
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=57.22 E-value=4 Score=34.85 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEECCEEe-CCCccCCCCCEEEE
Q 003224 815 VLVNGQLV-LPNTELKDGDIVEV 836 (838)
Q Consensus 815 ~~VNg~lv-pl~~~L~~GD~VeI 836 (838)
|+|||+.+ ...++++.||+|+|
T Consensus 48 V~VNG~~v~~~~~~v~~gd~I~v 70 (79)
T 1p9k_A 48 VKVDGAVETRKRCKIVAGQTVSF 70 (79)
T ss_dssp HEETTBCCCCSSCCCCSSEEEEE
T ss_pred EEECCEEecCCCCCCCCCCEEEE
Confidence 79999987 78999999999987
No 67
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=57.07 E-value=5.5 Score=38.81 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=21.9
Q ss_pred ceEEECCEEe-CCCccCCCCCEEEEe
Q 003224 813 KLVLVNGQLV-LPNTELKDGDIVEVR 837 (838)
Q Consensus 813 ~~~~VNg~lv-pl~~~L~~GD~VeI~ 837 (838)
..|.|||+.| -+++.++.||+|+|.
T Consensus 76 G~V~VNG~~v~~ps~~V~~gD~I~V~ 101 (159)
T 1c05_A 76 GHILVDGSRVNIPSYRVKPGQTIAVR 101 (159)
T ss_dssp TCEEETTEECCCSSCBCCTTCEEEEC
T ss_pred CCEEECCEEeCcCCcEeCCCCEEEEe
Confidence 3489999999 599999999999984
No 68
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=56.44 E-value=5.7 Score=36.73 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.9
Q ss_pred eEEECCEE----eCCCccCCCCCEEEEe
Q 003224 814 LVLVNGQL----VLPNTELKDGDIVEVR 837 (838)
Q Consensus 814 ~~~VNg~l----vpl~~~L~~GD~VeI~ 837 (838)
.+.|||+- --++|+|++||.|.|+
T Consensus 75 ~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 75 LVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp EEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred EEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 37999985 4699999999999986
No 69
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=55.52 E-value=5.8 Score=40.40 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.0
Q ss_pred ceEEECCEEeC-CCccCCCCCEEEEe
Q 003224 813 KLVLVNGQLVL-PNTELKDGDIVEVR 837 (838)
Q Consensus 813 ~~~~VNg~lvp-l~~~L~~GD~VeI~ 837 (838)
..|.|||+.|. +++.++.||+|+|.
T Consensus 124 G~V~VNG~~v~~ps~~V~~gD~I~V~ 149 (209)
T 2vqe_D 124 GHITVNGRRVDLPSYRVRPGDEIAVA 149 (209)
T ss_dssp TCEEETTEECCCTTCBCCTTCEEEEC
T ss_pred CCEEECCEEeCcCCcCcCCCCEEEEc
Confidence 34899999994 99999999999984
No 70
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=55.36 E-value=14 Score=34.79 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.1
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI 836 (838)
.+++|||+.+.- .++|++||+|.|
T Consensus 75 NGT~vNg~~l~~~~~~~L~~GD~I~l 100 (138)
T 2pie_A 75 NGVWLNRARLEPLRVYSIHQGDYIQL 100 (138)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCcEECCCCCEEEE
Confidence 467999999988 589999999987
No 71
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=54.28 E-value=4.4 Score=39.83 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 125 PYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
....|.+.||.+...+....|.......+||||||+=-
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk 55 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK 55 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 35689999987654332211222345778999999854
No 72
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=54.00 E-value=4.4 Score=39.85 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 126 YLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 126 YI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
...|.+.||.+...+....|.......+||||||+=.
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk 56 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 4689999987654332211222346778999999854
No 73
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=53.84 E-value=7.1 Score=38.93 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEECCEEeCCCccCCCCCEEEE
Q 003224 815 VLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 815 ~~VNg~lvpl~~~L~~GD~VeI 836 (838)
++|||+.|.-.++|++||+|-+
T Consensus 142 t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 142 TYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp EEETTEECCSCEECCTTCEEEE
T ss_pred EEEcCEEccccEEcCCCCEEEE
Confidence 5899999998999999999965
No 74
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=53.07 E-value=17 Score=36.84 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHhhc--CCcccc-------CcchhhHHHHHHHHHHHcCCC--CCCChhhHHHHhhhhcccc
Q 003224 100 NDEQVQKAIAFAKRAHH--GQFRKT-------GDPYLTHCIHTGRILAMLIPS--SGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 100 ~~~~l~kA~~fA~~aH~--gQ~Rks-------GePYI~Hpl~VA~ILA~l~~~--~g~~D~dtI~AALLHDvVE 162 (838)
....+.+.+.|....++ .+.|.+ .|..-.|...||.+..-+... .+.+-.-++..||+||+.|
T Consensus 6 ~~~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E 79 (200)
T 3kh1_A 6 PESRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVE 79 (200)
T ss_dssp GGHHHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTH
T ss_pred chHHHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHH
Confidence 33578888888888764 234432 245678999998764322211 1122246889999999999
No 75
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=52.06 E-value=6 Score=36.34 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
.+++|||+.+.-.++|++||+|.|
T Consensus 80 ngt~vNg~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 80 AETYVDGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp SCEEETSCBCSSCEEECTTCEEEE
T ss_pred CCEEECCEEcCCCEECCCCCEEEE
Confidence 357999999997789999999976
No 76
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=51.88 E-value=6.5 Score=34.73 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
.+.+|||+.++ .++|++||++.|
T Consensus 65 nGt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 65 NGTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp SCCEETTEECS-EEECCTTCEEEE
T ss_pred CCEEECCEECc-eEECCCCCEEEE
Confidence 35799999998 799999999986
No 77
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=51.35 E-value=5.2 Score=39.68 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003224 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (838)
Q Consensus 125 PYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVE 162 (838)
....|.+.||.+...+....|.......+||||||+=.
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK 63 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAK 63 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCC
Confidence 35689999987654332211222345678999999854
No 78
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=50.69 E-value=11 Score=31.71 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.9
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||+ .|+.++.|+.||.|+|+..
T Consensus 56 N~~--~v~~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 56 NQT--LVSFDHPLTDGDEVAFFPP 77 (81)
T ss_dssp TTE--ECCTTCBCCTTCEEEEECC
T ss_pred CCE--ECCCCCCCCCCCEEEEeCC
Confidence 899 8999999999999999753
No 79
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=50.67 E-value=9.8 Score=35.70 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.5
Q ss_pred ceEEECCEEeCCCc--cCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPNT--ELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~~--~L~~GD~VeI 836 (838)
.+.+|||+.++... +|++||+|.+
T Consensus 94 NGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 94 HGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CceEECCEECCCCceeECCCCCEEEE
Confidence 46799999998864 7999999976
No 80
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=50.62 E-value=10 Score=34.30 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.8
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEEe
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEVR 837 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI~ 837 (838)
.+++|||+.+.. .++|++||+|.|-
T Consensus 68 NGt~vng~~l~~~~~~~L~~GD~i~~G 94 (116)
T 1lgp_A 68 SGTVINKLKVVKKQTCPLQTGDVIYLV 94 (116)
T ss_dssp SCCCCCCCCCCCSSCCCCCTTCEEEEE
T ss_pred CCcEECCEEcCCCCcEECCCCCEEEEe
Confidence 457999998886 5899999999873
No 81
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=49.41 E-value=13 Score=35.29 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.8
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI 836 (838)
.+++|||+.++. .++|++||+|.|
T Consensus 83 NGT~vNg~~i~~~~~~~L~~GD~I~i 108 (145)
T 2csw_A 83 NGVWLNRARLEPLRVYSIHQGDYIQL 108 (145)
T ss_dssp SCEEESSCBCCBTCCEECCSSCCEEE
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 457999999887 589999999987
No 82
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=49.02 E-value=15 Score=37.40 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=28.3
Q ss_pred cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003224 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (838)
Q Consensus 124 ePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVED 163 (838)
+..-.|.+.||.+...+.+ ..+...+.+||+||+.|-
T Consensus 54 eSVAeHS~~va~ia~~l~~---~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCP---GATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCT---TCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCC---CCCHHHHHHHHhcCchHh
Confidence 5567899999988765542 235678999999999884
No 83
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=48.06 E-value=14 Score=38.59 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCCh-hhHHHHhhhhccc
Q 003224 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRA-VDTVVAGILHDVV 161 (838)
Q Consensus 104 l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D-~dtI~AALLHDvV 161 (838)
|.+|+++--......-.....|-+.|.+.+|.....-+. | .-.++||||||+=
T Consensus 38 i~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~-----d~dw~~laaLlHDLG 91 (250)
T 2ibn_A 38 VMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHP-----DKDWFHLVGLLHDLG 91 (250)
T ss_dssp HHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHST-----TCHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCc-----ChhHHHHHHHHhccH
Confidence 567766655444433222345678999999988766554 3 3455999999963
No 84
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=46.88 E-value=8.3 Score=36.16 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.3
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
.+++|||+.+.- ++|++||+|.|
T Consensus 82 NGT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 82 NGLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp SCEEETTEEESE-EECCTTCEEEC
T ss_pred CceEECCEEeEe-EECCCCCEEEE
Confidence 468999999985 99999999976
No 85
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=46.44 E-value=12 Score=32.97 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.0
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||+ .|+.++.|+.||.|+|+..
T Consensus 73 Ng~--~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 73 NGR--YVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp TTB--CCCTTCBCCTTCEEEEESC
T ss_pred CCE--ECCCCCCCCCCCEEEEECC
Confidence 899 8999999999999999753
No 86
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=44.70 E-value=9.6 Score=36.39 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.7
Q ss_pred ceEEECCEEeCC-CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP-NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl-~~~L~~GD~VeI 836 (838)
.+++|||+.+.- .++|++||+|.|
T Consensus 87 NGT~VNg~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 87 NGTFINGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp SCEEETTEECCSSCEEECSSEEEEE
T ss_pred CCeEECCEEcCCCceECCCCCEEEE
Confidence 457999999987 589999999987
No 87
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=44.24 E-value=10 Score=38.57 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=22.7
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEEe
Q 003224 811 EGKLVLVNGQLV-LPNTELKDGDIVEVR 837 (838)
Q Consensus 811 ~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 837 (838)
.+..|.|||+.| -+++.++.||+|+|.
T Consensus 112 ~~G~V~VNG~~V~~pS~~V~~gD~I~V~ 139 (201)
T 3bbn_D 112 NHRHILVNGRIVDIPSYRCKPQDTIMAR 139 (201)
T ss_dssp HTTCEEETTEECCCTTCBCCTTEEEEEC
T ss_pred hCCcEEeCCEEEeecceecCCCCEEEEc
Confidence 344579999998 489999999999984
No 88
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=44.23 E-value=11 Score=37.12 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=25.2
Q ss_pred cchhhHHHHHHHHH---HHcC--CCCCCChhh-HHHHhhhhccccc
Q 003224 124 DPYLTHCIHTGRIL---AMLI--PSSGKRAVD-TVVAGILHDVVDD 163 (838)
Q Consensus 124 ePYI~Hpl~VA~IL---A~l~--~~~g~~D~d-tI~AALLHDvVED 163 (838)
+.-..|...||.+. +... ...+ .|.. .+.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~-~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKR-IDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhchHHH
Confidence 55678999988765 3320 0012 2444 6889999999873
No 89
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=43.88 E-value=11 Score=34.31 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
.+++|||+.+. .++|++||+|.|
T Consensus 73 nGt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 73 NGTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp SCEEETTEECS-EEEECTTCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 35799999998 789999999986
No 90
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=42.94 E-value=18 Score=31.14 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=20.1
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003224 609 GGRELLVAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVpls~~L~~GD~VeI~ts 632 (838)
||+ .|+.++.|+.||.|+|+..
T Consensus 64 N~~--~v~~~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 64 NGE--AAALGEATAAGDELALFPP 85 (89)
T ss_dssp TTE--ECCTTSBCCTTCEEEEECC
T ss_pred CCE--ECCCCcccCCCCEEEEECC
Confidence 899 8999999999999999753
No 91
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=40.49 E-value=13 Score=35.51 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.6
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI 836 (838)
.+.+|||+.++. .++|++||+|.|
T Consensus 103 NGT~VNg~~i~~~~~~~L~~GD~I~l 128 (149)
T 1gxc_A 103 NGTFVNTELVGKGKRRPLNNNSEIAL 128 (149)
T ss_dssp SCEEETTEECCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEECCCCCEEEE
Confidence 457999999985 689999999986
No 92
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=40.30 E-value=12 Score=41.54 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=47.9
Q ss_pred HHHhccccccccccCCCCccCCCCceeeeceeccCCCCCCH--HHHHHHHHHHHHhhcCCcc--ccCc---chhhHHHHH
Q 003224 61 AIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFND--EQVQKAIAFAKRAHHGQFR--KTGD---PYLTHCIHT 133 (838)
Q Consensus 61 ~~~~~~~~~~~~df~~~~~~~~~~~~~~~g~~~~~y~~~~~--~~l~kA~~fA~~aH~gQ~R--ksGe---PYI~Hpl~V 133 (838)
.+|.-||.+.+..-.|..-++.+. =..|.. .+|-..-.|=.-.+..|.- ..|+ .-++|.++|
T Consensus 15 ~l~~~a~~~~~~~~R~~~e~~~~~-----------R~~FqrD~~rII~S~~FrRL~~ktQv~~~~~~d~~~tRl~HSl~V 83 (376)
T 2dqb_A 15 RLAPYAQKARDTRGRAHPEPESLY-----------RTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEV 83 (376)
T ss_dssp HSCTTSCCGGGCCCCSSCCCCCSS-----------CCHHHHHHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHH
T ss_pred hcChhhcCchhhcCccCCCCCCCC-----------CCcHHHHHHHHHCCHHHHHHcCCCccccCCCCcccccHHHHHHHH
Confidence 367789988765433322221110 112333 3454555555555666752 1232 346999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHhhhhccc
Q 003224 134 GRILAMLIPSSGKRAVDTVVAGILHDVV 161 (838)
Q Consensus 134 A~ILA~l~~~~g~~D~dtI~AALLHDvV 161 (838)
|.+...+...-|....-+-+||||||+=
T Consensus 84 a~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 84 AQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 9875433221122233466899999985
No 93
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=39.68 E-value=18 Score=37.41 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003224 127 LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (838)
Q Consensus 127 I~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVED 163 (838)
+.|.+.|+.....+....+.......+||||||+...
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 6899999988766654333333457799999999764
No 94
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=38.77 E-value=12 Score=35.77 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.4
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003224 814 LVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 814 ~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
+.+|||+.+. .+.|++||+|.|
T Consensus 109 GT~VNg~~i~-~~~L~~GD~I~i 130 (143)
T 2kb3_A 109 GTYVNREPRN-AQVMQTGDEIQI 130 (143)
T ss_dssp CCEETTEECS-EEECCTTEEEEE
T ss_pred CeEECCEEcc-eEECCCCCEEEE
Confidence 3689999998 789999999986
No 95
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=38.09 E-value=16 Score=33.77 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.9
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI 836 (838)
.+.+|||+.+.. .++|++||+|.|
T Consensus 79 NGT~vNg~~l~~~~~~~L~~Gd~I~l 104 (127)
T 1g6g_A 79 NGTWLNGQKVEKNSNQLLSQGDEITV 104 (127)
T ss_dssp SCCEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCeEEcCCCCEEEE
Confidence 567999999887 589999999987
No 96
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=38.00 E-value=12 Score=34.51 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=20.6
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
.+++|||+.+.-.+.|++||+|.|
T Consensus 75 nGt~vNg~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 75 NPTQVNGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp SCCEETTEECSSCEECCTTEEEEC
T ss_pred CCEEECCEECCCcEEcCCCCEEEE
Confidence 457999999986689999999976
No 97
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=37.24 E-value=10 Score=34.46 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.2
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI 836 (838)
.+.+|||+.+.. .++|++||+|.|
T Consensus 76 nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 76 NGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp SCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEEcCCCCEEEE
Confidence 357999998876 588999999986
No 98
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=37.04 E-value=16 Score=33.35 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEECCEEeCCC--ccCCCCCEEEEe
Q 003224 815 VLVNGQLVLPN--TELKDGDIVEVR 837 (838)
Q Consensus 815 ~~VNg~lvpl~--~~L~~GD~VeI~ 837 (838)
..|||+.+.-+ ++|++||+++++
T Consensus 66 ~~vng~~l~k~~~~~L~~GD~l~Ll 90 (102)
T 3kt9_A 66 TSIDSVVIGKDQEVKLQPGQVLHMV 90 (102)
T ss_dssp CEETTEECCBTCEEEECTTCCEEEE
T ss_pred CeECCEEcCCCCeEEeCCCCEEEEc
Confidence 47899988887 999999999986
No 99
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=35.98 E-value=4.7 Score=41.13 Aligned_cols=26 Identities=31% Similarity=0.662 Sum_probs=21.9
Q ss_pred CceEEECCEEe-CCCccCCCCCEEEEe
Q 003224 812 GKLVLVNGQLV-LPNTELKDGDIVEVR 837 (838)
Q Consensus 812 ~~~~~VNg~lv-pl~~~L~~GD~VeI~ 837 (838)
+..|.|||+.| -+++.++.||+|+|.
T Consensus 119 ~G~V~VNG~~V~~ps~~Vk~GD~I~V~ 145 (205)
T 3r8n_D 119 HKAIMVNGRVVNIASYQVSPNDVVSIR 145 (205)
T ss_dssp TTCCBSSSSBCCCTTCBCCTTBCCBCC
T ss_pred CCCEEECCEEEccCCcCcCCCCEEEec
Confidence 34579999999 489999999999874
No 100
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=35.22 E-value=12 Score=36.24 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.0
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI 836 (838)
.+.+|||+.+.- .++|++||+|.|
T Consensus 83 NGT~VNg~ri~~~~~~~L~~GD~I~l 108 (158)
T 1dmz_A 83 NVSYLNNNRMIQGTKFLLQDGDEIKI 108 (158)
T ss_dssp TCCEETTEECCSSEEEECCSSCCEES
T ss_pred CCeEECCEEcCCCceEEcCCCCEEEE
Confidence 457999999988 589999999987
No 101
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=35.04 E-value=14 Score=34.66 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.5
Q ss_pred ceEEECCEEeCC----------CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP----------NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl----------~~~L~~GD~VeI 836 (838)
.+.+|||+.++. .++|++||+|.|
T Consensus 76 NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 76 NGTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred CCEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 457999999984 789999999976
No 102
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=34.86 E-value=14 Score=35.95 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred ceEEECCEEeCCC--ccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPN--TELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~--~~L~~GD~VeI 836 (838)
.+.+|||+.++.. ++|++||+|.|
T Consensus 117 NGT~VNg~ri~~~~~~~L~~GD~I~~ 142 (158)
T 3els_A 117 NGTCLNNVVIPGARYIELRSGDVLTL 142 (158)
T ss_dssp SCCEETTEECCTTCCEECCTTEEEES
T ss_pred CccEECCEEcCCCceEEcCCCCEEEE
Confidence 4579999999984 78999999975
No 103
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=34.85 E-value=20 Score=34.70 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.0
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI 836 (838)
.+.+|||+.+.. .++|++||+|.|
T Consensus 107 NGT~vNg~~i~~~~~~~L~~GD~I~i 132 (164)
T 1g3g_A 107 NGTWLNGQKVEKNSNQLLSQGDEITV 132 (164)
T ss_dssp SCEEETTEEECTTEEEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCceEcCCCCEEEE
Confidence 567999999988 489999999987
No 104
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=33.03 E-value=23 Score=30.16 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.3
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003224 609 GGRELLVA----VSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVp----ls~~L~~GD~VeI~ts 632 (838)
||+ .++ .++.|+.||.|+|+..
T Consensus 61 N~~--~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 61 NGN--NITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp SSS--BGGGTCSSSCBCCTTCEEEEECC
T ss_pred CCE--EccccCCCCcCCCCCCEEEEeCC
Confidence 889 887 7999999999999753
No 105
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=32.45 E-value=19 Score=35.11 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.6
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003224 814 LVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 814 ~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
+++|||+.+. .++|++||+|.|
T Consensus 128 GT~VNG~~i~-~~~L~~GD~I~l 149 (157)
T 3oun_A 128 GTTVNNAPVQ-EWQLADGDVIRL 149 (157)
T ss_dssp CCEETTEECS-EEECCTTCEEEE
T ss_pred CeEECCEECc-eEECCCCCEEEE
Confidence 5799999997 689999999986
No 106
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=32.03 E-value=36 Score=31.00 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEECCEEeCC---CccCCCCCEEEEe
Q 003224 815 VLVNGQLVLP---NTELKDGDIVEVR 837 (838)
Q Consensus 815 ~~VNg~lvpl---~~~L~~GD~VeI~ 837 (838)
..|||.++.- +++|+|||.|++.
T Consensus 71 ~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 71 ITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred EEECCEEhhhchhheEecCCCEEEEE
Confidence 4899999886 7899999999985
No 107
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=31.65 E-value=14 Score=36.64 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.1
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLP--NTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl--~~~L~~GD~VeI 836 (838)
.+.+|||+.+.- .++|++||+|.|
T Consensus 107 NGT~VNg~ri~~~~~~~L~~GD~I~l 132 (182)
T 1qu5_A 107 NVSYLNNNRMIQGTKFLLQDGDEIKI 132 (182)
T ss_dssp SCCEETTEECCSSEEEECCTTBCCEE
T ss_pred CCeEECCEEcCCCcceEcCCCCEEEE
Confidence 457999999988 589999999987
No 108
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=31.28 E-value=12 Score=43.76 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=38.5
Q ss_pred cCCCCCceeee---c----CCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003224 583 SLKMGHPVIRV---E----GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 635 (838)
Q Consensus 583 ~lp~G~tvl~~---v----G~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~~p 635 (838)
+.|.|.|+.++ + ...+++|+| ||+ ++.|++.|..+..|+++|...+
T Consensus 15 ~~~~g~t~~~ia~~~~~~~~~~~v~~~v-----ng~--~~dl~~~l~~d~~v~~~~~~~~ 67 (645)
T 1nyr_A 15 AFDKGTTTEDIAQSISPGLRKKAVAGKF-----NGQ--LVDLTKPLETDGSIEIVTPGSE 67 (645)
T ss_dssp BCCTTCCHHHHHHTTCHHHHHHCCEEEE-----TTE--EECTTSCCCSCBCCCEECTTSH
T ss_pred EecCCCCHHHHHHHhhhhcccCeEEEEE-----CCE--EEeCCcccCCCCeEEEeeccch
Confidence 46788888776 2 346899999 999 9999999999999999998754
No 109
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=31.17 E-value=53 Score=33.27 Aligned_cols=122 Identities=10% Similarity=0.076 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhh--cCCcccc--------CcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc--ccCCHHHH
Q 003224 104 VQKAIAFAKRAH--HGQFRKT--------GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD--ACESLGSI 171 (838)
Q Consensus 104 l~kA~~fA~~aH--~gQ~Rks--------GePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVED--T~~T~eeI 171 (838)
+.+.+.|...++ +.+.|.+ .|..-.|...||.+..-+.. .+.+-...+..||+||+.|- +++|+-+
T Consensus 14 ~~~~~~Fl~~~~~LK~i~R~g~~~~gv~~~ESVAEHS~~vAliA~~l~~-~~vD~~r~~~maL~HDl~E~~tGDitp~k- 91 (204)
T 4dmb_A 14 ARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDIAPAD- 91 (204)
T ss_dssp HHHHHHHHHHHHHGGGCBCHHHHHTTCSSCCBHHHHHHHHHHHHHHSCC-TTSCHHHHHHHHHHTTTTHHHHCCCCGGG-
T ss_pred HHHHHHHHHHHHHhccCccCCCcCCCCCCCCcHHHHHHHHHHHHHHHcc-ccCCHHHHHHHHHhcchHHhhcCCCcccc-
Confidence 445555555554 2344421 35667899999977554432 22222368889999999993 2333210
Q ss_pred HHHhcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhh--cCCccEEEeehhhHHhhhh
Q 003224 172 EEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGM--VDDPRVVLIKLADRLHNMR 243 (838)
Q Consensus 172 ~~~FG~eVA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAm--a~D~RVvLIKLADRLhNMR 243 (838)
..+.+.-.-++. ..+..+. ..+...+.+.++.++.-+ .+.+-+.+||-||+|.-+-
T Consensus 92 --~~~~~~k~~~E~----~A~~~l~----------~~LP~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~ll 149 (204)
T 4dmb_A 92 --NIPKEEKHRREE----EAMKQIT----------QLLPEDLRKELYELWEEYETQSSAEAKFVKQLDQCEMIL 149 (204)
T ss_dssp --CCCHHHHHHHHH----HHHHHHH----------TTSCHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred --ccchhhhHHHHH----HHHHHHH----------HhCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 011110000000 0000000 112233455666666654 4566789999999998653
No 110
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=30.97 E-value=19 Score=35.17 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.7
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI 836 (838)
.+.+|||+.+. ...|++||+|.|
T Consensus 117 NGT~VNg~~i~-~~~L~~GD~I~i 139 (162)
T 2kfu_A 117 NGTYVNREPVD-SAVLANGDEVQI 139 (162)
T ss_dssp SCEEETTBCCS-EEECCSSCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 34699999988 689999999986
No 111
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=30.81 E-value=9.7 Score=33.38 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=16.6
Q ss_pred ceEEECCEEeCCCccCCCCCEEEEe
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEVR 837 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI~ 837 (838)
+.+...|--..-++++.|||++||+
T Consensus 57 K~~~L~~~~~L~d~~ItnGD~Leil 81 (81)
T 2bps_A 57 KDKVFSGECKLSDCGITNGDRLEIL 81 (81)
T ss_dssp GTEEEETTSBTGGGTCCTTCEEEEC
T ss_pred CCEEEcCCCEEeeCCcCCCCEEEEC
Confidence 3333333334458999999999985
No 112
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=29.47 E-value=20 Score=36.61 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.5
Q ss_pred ceEEECCEEeCCC--ccCCCCCEEEE
Q 003224 813 KLVLVNGQLVLPN--TELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvpl~--~~L~~GD~VeI 836 (838)
.+.+|||+.++.. ++|++||+|.+
T Consensus 164 NGTfVNG~rI~~~~~~~L~~GD~I~f 189 (205)
T 3elv_A 164 NGTCLNNVVIPGARYIELRSGDVLTL 189 (205)
T ss_dssp SCCEETTEECCBTSCEECCTTCEEES
T ss_pred CCCeECCEECCCCceeECCCCCEEEE
Confidence 4679999999876 58999999975
No 113
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=29.24 E-value=18 Score=39.73 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=24.0
Q ss_pred chhhHHHHHHHHHHHcCCCCCCCh-hhHHHHhhhhcccc
Q 003224 125 PYLTHCIHTGRILAMLIPSSGKRA-VDTVVAGILHDVVD 162 (838)
Q Consensus 125 PYI~Hpl~VA~ILA~l~~~~g~~D-~dtI~AALLHDvVE 162 (838)
..+.|.+.||.+...+....|... ....+||||||+-.
T Consensus 50 ~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~ 88 (371)
T 2hek_A 50 TRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGH 88 (371)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTC
T ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 458999999876533221111112 34679999999865
No 114
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=29.10 E-value=13 Score=43.58 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=37.9
Q ss_pred CCCCCceeee---c----CCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003224 584 LKMGHPVIRV---E----GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 635 (838)
Q Consensus 584 lp~G~tvl~~---v----G~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~~p 635 (838)
.+.|.|+.++ + ...+++|+| ||+ ++.|+++|..+..|+++|...+
T Consensus 14 ~~~~~t~~~~a~~i~~~~~~~~~~~~v-----ng~--~~dl~~~l~~d~~~~~~~~~~~ 65 (642)
T 1qf6_A 14 YDHAVSPMDVALDIGPGLAKACIAGRV-----NGE--LVDACDLIENDAQLSIITAKDE 65 (642)
T ss_dssp CSSCBCHHHHHHHHCHHHHHHCSEEEE-----TTE--EEETTSCBCSCEECCEECTTSH
T ss_pred ecCCCCHHHHHHHhchhhhhheEEEEE-----CCE--EeccccccCCCceEEEeecCcH
Confidence 6788888766 3 356899999 999 9999999999999999998764
No 115
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=27.69 E-value=33 Score=32.10 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=20.0
Q ss_pred ceEEECCEEeC--CCccCCCCCEEEE
Q 003224 813 KLVLVNGQLVL--PNTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lvp--l~~~L~~GD~VeI 836 (838)
.+.+|||+.+. -.++|++||+|.|
T Consensus 100 NGT~vNg~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 100 HGTFLGHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp SCEESSSCEECSSSCCEECTTCCBBC
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 46799999998 4688999999865
No 116
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=27.54 E-value=40 Score=28.06 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.8
Q ss_pred CCeeEE-EecccccCCCCeEEEcCC
Q 003224 609 GGRELL-VAVSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~l-Vpls~~L~~GD~VeI~ts 632 (838)
||+ . ...++.|+.||.|+|+..
T Consensus 48 N~~--~v~~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 48 NDH--LIDNLNTPLKDGDVISLLPP 70 (74)
T ss_dssp SSS--EECCTTCCCCTTCEEEEECC
T ss_pred CCE--EcCCCCcCCCCCCEEEEECC
Confidence 888 5 678999999999999753
No 117
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=26.86 E-value=48 Score=32.18 Aligned_cols=40 Identities=20% Similarity=0.081 Sum_probs=31.4
Q ss_pred EEEcCCCCeEeC--CCCCCHHHHHHHh-C-----CCCc------e-EEECCEEeC
Q 003224 784 IVCWPNGEIMRL--RSGSTAADAAMKV-G-----LEGK------L-VLVNGQLVL 823 (838)
Q Consensus 784 ~VftP~G~i~~L--p~GsT~~DfAy~i-h-----v~~~------~-~~VNg~lvp 823 (838)
+-|+-||+-+++ +.|.|.+|+.... | .||. | |.|||+.|.
T Consensus 5 i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~~v~ 59 (161)
T 1rm6_C 5 LRLTLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRL 59 (161)
T ss_dssp EEEEETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTEEEE
T ss_pred EEEEECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCcEEe
Confidence 579999999887 7899999999986 5 2221 2 799999764
No 118
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=26.58 E-value=1.9e+02 Score=22.90 Aligned_cols=56 Identities=9% Similarity=0.202 Sum_probs=40.3
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCCc--eEEECCEEeCC-----CccCCCCCEEEEe
Q 003224 782 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLP-----NTELKDGDIVEVR 837 (838)
Q Consensus 782 ~v~VftP~G~i--~~Lp~GsT~~DfAy~ih----v~~~--~~~VNg~lvpl-----~~~L~~GD~VeI~ 837 (838)
.|+|=+++|+. ++++..+|..|+--.|. +... -...+|+...- +|.+++|+.|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 46788888884 67889999999888874 4332 24668887643 4556799998764
No 119
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=26.41 E-value=14 Score=39.58 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=0.0
Q ss_pred CCCceEEECCEE-eCCCccCCCCCEEEEe
Q 003224 810 LEGKLVLVNGQL-VLPNTELKDGDIVEVR 837 (838)
Q Consensus 810 v~~~~~~VNg~l-vpl~~~L~~GD~VeI~ 837 (838)
+....|+|||+. +..+++++.||+|+|.
T Consensus 39 I~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 39 ILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp -----------------------------
T ss_pred HHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 334458999998 8899999999999874
No 120
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=26.20 E-value=25 Score=37.62 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=23.4
Q ss_pred cCcchh-hHHHHHHHHHHHcCCCCCCChhh----HHHHhhhhccc
Q 003224 122 TGDPYL-THCIHTGRILAMLIPSSGKRAVD----TVVAGILHDVV 161 (838)
Q Consensus 122 sGePYI-~Hpl~VA~ILA~l~~~~g~~D~d----tI~AALLHDvV 161 (838)
...+|. .|.+.||.+...+...-|....+ ..+||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 445665 69999987654332111222233 45699999984
No 121
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=25.45 E-value=48 Score=28.62 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.2
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003224 609 GGRELLVA----VSFGLAASEVVADRRP 632 (838)
Q Consensus 609 nGr~~lVp----ls~~L~~GD~VeI~ts 632 (838)
||+ .++ +++.|+.||.|.|+..
T Consensus 64 N~~--~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 64 NDE--DVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp TTE--EGGGTTGGGCBCCTTCEEEEEEC
T ss_pred CCE--EccCcCCCCcCCCCCCEEEEECC
Confidence 889 888 6999999999999753
No 122
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=22.92 E-value=31 Score=37.52 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=14.4
Q ss_pred hhhhhhhHHHHHHHHHHHh
Q 003224 389 GIALTSLVACEEALEKELL 407 (838)
Q Consensus 389 ~~al~~l~~~~~~L~~~l~ 407 (838)
..||+....|+..|.++|.
T Consensus 222 ~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 222 SDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3577778888888888863
No 123
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=22.89 E-value=2.4e+02 Score=22.28 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=39.9
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCCc--eEEECCEEeCC-----CccCCCCCEEEEe
Q 003224 782 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLP-----NTELKDGDIVEVR 837 (838)
Q Consensus 782 ~v~VftP~G~i--~~Lp~GsT~~DfAy~ih----v~~~--~~~VNg~lvpl-----~~~L~~GD~VeI~ 837 (838)
.|+|=+++|+. ++++..+|..|+--+|. +... -...+|+...- +|-+++|+.|.+.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 36788888874 67889999999888774 3332 24668887533 4556799998775
No 124
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=21.88 E-value=35 Score=32.02 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=18.7
Q ss_pred ceEEECCEEe---C-CCccCCCCCEEEE
Q 003224 813 KLVLVNGQLV---L-PNTELKDGDIVEV 836 (838)
Q Consensus 813 ~~~~VNg~lv---p-l~~~L~~GD~VeI 836 (838)
.+.+|||+.+ | -.++|++||+|.|
T Consensus 89 NGT~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 89 NGTQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp SCEEETTTTEEECTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcccCCCCEEECCCCCEEEE
Confidence 3579999875 2 3578999999986
No 125
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=21.68 E-value=1.1e+02 Score=26.37 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=24.7
Q ss_pred EEEEEccCCeeEEEecccccCCCCeEEEcCCCC
Q 003224 602 VIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 634 (838)
Q Consensus 602 kV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~~ 634 (838)
.|...+.++....|-+.-.+.-||.|||++...
T Consensus 11 ~V~~~~~~~g~~~ie~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 11 LVLGYDPETGIATVQQRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp EEEEEETTTTEEEEEESSCBCTTCEEEEESTTS
T ss_pred EEEEEeCCCCEEEEEEcCCcCCCCEEEEEcCCC
Confidence 555665443345788999999999999998764
No 126
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=21.24 E-value=40 Score=39.44 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.2
Q ss_pred ceEEECCEEeCCCccCCCCCEEEEeC
Q 003224 813 KLVLVNGQLVLPNTELKDGDIVEVRV 838 (838)
Q Consensus 813 ~~~~VNg~lvpl~~~L~~GD~VeI~t 838 (838)
-.++|||+++.|+++|..+..|+++|
T Consensus 38 v~~~vng~~~dl~~~l~~d~~v~~~~ 63 (645)
T 1nyr_A 38 VAGKFNGQLVDLTKPLETDGSIEIVT 63 (645)
T ss_dssp CEEEETTEEECTTSCCCSCBCCCEEC
T ss_pred EEEEECCEEEeCCcccCCCCeEEEee
Confidence 34699999999999999999999876
No 127
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=21.19 E-value=74 Score=31.40 Aligned_cols=55 Identities=22% Similarity=0.365 Sum_probs=34.5
Q ss_pred HHHHHHHHHhh--cCCcc----ccC----cchhhHHHHHHHH---HHHcCCCCCCCh---hhHHHHhhhhcccc
Q 003224 105 QKAIAFAKRAH--HGQFR----KTG----DPYLTHCIHTGRI---LAMLIPSSGKRA---VDTVVAGILHDVVD 162 (838)
Q Consensus 105 ~kA~~fA~~aH--~gQ~R----ksG----ePYI~Hpl~VA~I---LA~l~~~~g~~D---~dtI~AALLHDvVE 162 (838)
...+.|...+. +.+.| ..| |..-.|...||.+ |+... |.+- ...+..||+||+.|
T Consensus 8 ~~~~~Fl~~~~~LK~i~R~gw~~~gv~~~EsVAeHS~~vA~iA~~la~~~---~vd~~~~~r~~~maL~HDl~E 78 (173)
T 1ynb_A 8 DDVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKS---GESVEKACKAATAALFHDLHE 78 (173)
T ss_dssp HHHHHHHHHHHGGGGSBCGGGGGGTCSSCCBHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHhccCccCCcccCCCCCCCcHHHHHHHHHHHHHHHhhhc---CCChhHHHHHHHHHHHcchHH
Confidence 34444554443 34556 345 4567899998877 55542 2223 35678999999988
Done!