BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003225
(838 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1
OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2
Length = 1041
Score = 1355 bits (3506), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/847 (79%), Positives = 751/847 (88%), Gaps = 16/847 (1%)
Query: 1 MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS-QKVMLVPIREM 59
MQK ID+G++LQIRSV+ALDHLKN+IY+EADKEAHVKEA KG+RNIY+ QK++LVPIREM
Sbjct: 202 MQKFIDRGADLQIRSVVALDHLKNFIYVEADKEAHVKEAIKGMRNIYANQKILLVPIREM 261
Query: 60 TDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKL 119
TDVL+VESKAIDLSRDTWVRMKIG YKGDLAKVVDVDNVRQRVTVKLIPRIDLQALA+KL
Sbjct: 262 TDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALASKL 321
Query: 120 EGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVS 179
+GREV+KKK FVPPPRFMN+DEARELHIRVERRRD MTGDYFENIGGMLFKDGF YK VS
Sbjct: 322 DGREVSKKKAFVPPPRFMNIDEARELHIRVERRRDHMTGDYFENIGGMLFKDGFHYKQVS 381
Query: 180 MKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKN 239
+KSI+ QN+ PTFDELEKF P ENGE D LSTLFANRKKGHFMKGDAVIVIKGDLKN
Sbjct: 382 LKSITVQNVTPTFDELEKFNKPSENGEGDFGGLSTLFANRKKGHFMKGDAVIVIKGDLKN 441
Query: 240 LKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKV 299
LKGWVEKVDEENV IR E+KGLP LAVN +ELCKYFEPGNHVKVVSGT GATGMV+KV
Sbjct: 442 LKGWVEKVDEENVLIRSEVKGLPDPLAVNERELCKYFEPGNHVKVVSGTHEGATGMVVKV 501
Query: 300 EQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVES 359
+QHVLIILSDTTKE +RVFAD VVESSEVTTG+TKIGDYEL DLVLLDN SFGVIIR+E+
Sbjct: 502 DQHVLIILSDTTKEHVRVFADHVVESSEVTTGVTKIGDYELHDLVLLDNLSFGVIIRLEN 561
Query: 360 EAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGP 419
EAFQVLKGVPDRPEVALVKLREIKCKLEKK NVQDR KN +AVKD VR++EGP KGKQGP
Sbjct: 562 EAFQVLKGVPDRPEVALVKLREIKCKLEKKINVQDRYKNVIAVKDDVRVIEGPSKGKQGP 621
Query: 420 VEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRN-GDAYSRFNSLRTPPRI 478
V+HIY+G+LFI+DRHHLEHAGFICAK +SC+VVGGSR+ +RN GD+ SR+ + + P +
Sbjct: 622 VKHIYKGVLFIYDRHHLEHAGFICAKCTSCIVVGGSRSGANRNGGDSLSRYGNFKAPAPV 681
Query: 479 PQSPGRYSRGGPPAGGRN-----RGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSV 533
P SPGR+ RG + G G D+L+GTTVK+RLGP+KGYRG VV+VKG SV
Sbjct: 682 PSSPGRFQRGRGGGYNNSGGRHGGGRGRGDDSLLGTTVKIRLGPFKGYRGPVVEVKGNSV 741
Query: 534 RVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAG 593
RVELE MK+VTVDR ISDN V +TP+RDT RY MGSETPMHPSRTPLHPYMTPMRD+G
Sbjct: 742 RVELE--MKIVTVDRGAISDN-VATTPFRDTSRYSMGSETPMHPSRTPLHPYMTPMRDSG 798
Query: 594 ATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPG 653
ATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPG
Sbjct: 799 ATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPG 858
Query: 654 SGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTP 713
SGWASTPGG+YSDAGTPRD S Y NAPSPYLPSTP GQPMTP+SASYLPGTPGGQPMTP
Sbjct: 859 SGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPSTP-GQPMTPSSASYLPGTPGGQPMTP 917
Query: 714 GTGGLDAMSPVIGADNEGPWFMPDILV--RRSGEESVVGVIREVLPDGSCRVVLGSSGNG 771
GT GLD MSPVIG D E WFMPDILV ++GE++ VGVIR+V DG+C+V LGSSG G
Sbjct: 918 GT-GLDVMSPVIGGDAEA-WFMPDILVDIHKAGEDTDVGVIRDV-SDGTCKVSLGSSGEG 974
Query: 772 DTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAI 831
DTI ALP+E+EI+PPRK+D++KI+GG +RG+TGKLIG+DG+DGIVK+D +LDVKILD+A+
Sbjct: 975 DTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLAL 1034
Query: 832 LAKLAQP 838
LAK QP
Sbjct: 1035 LAKFVQP 1041
>sp|O80770|SPT52_ARATH Putative transcription elongation factor SPT5 homolog 2
OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2
Length = 989
Score = 1065 bits (2753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/851 (66%), Positives = 656/851 (77%), Gaps = 65/851 (7%)
Query: 1 MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS-QKVMLVPIREM 59
MQK +D+GSE +IRS IALDHL+NY+YIEAD EAHVKEA KG+RNIY+ QK++LVPI+EM
Sbjct: 189 MQKIVDRGSEFKIRSAIALDHLQNYVYIEADMEAHVKEAIKGMRNIYANQKILLVPIKEM 248
Query: 60 TDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKL 119
T VL+VESKAIDLSRD+WVRMK+G YKGDLA+VVDVDNVR+RVTVKLIPRIDLQALANKL
Sbjct: 249 TAVLSVESKAIDLSRDSWVRMKLGIYKGDLAQVVDVDNVRKRVTVKLIPRIDLQALANKL 308
Query: 120 EGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVS 179
EG E KKK F PPPRFMN+DEARELHIRVE RRDPMTGDYFENIGGMLFKDGFLYK VS
Sbjct: 309 EGTENVKKKAFAPPPRFMNIDEARELHIRVEHRRDPMTGDYFENIGGMLFKDGFLYKKVS 368
Query: 180 MKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKN 239
KSI+AQN+ PTFDELE+F+ P ENGE D STLFANRKKGHFMKGDAVIVIKGDLKN
Sbjct: 369 TKSIAAQNVTPTFDELERFKRPNENGEIDFVDESTLFANRKKGHFMKGDAVIVIKGDLKN 428
Query: 240 LKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKV 299
LKGW+EKVDEENV IR EMK LP +AVN +ELCKYFEPGN VKVVSG G TGM++KV
Sbjct: 429 LKGWIEKVDEENVLIRSEMKDLPNPIAVNGRELCKYFEPGNFVKVVSGIHEGGTGMIVKV 488
Query: 300 EQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVES 359
+QH+LIILSDTTKE I VFAD V +S+EVT G+TKIGDYEL DLV+L + SFGVI++++S
Sbjct: 489 DQHMLIILSDTTKEHICVFADHVAKSAEVTKGVTKIGDYELHDLVILSDFSFGVILKLDS 548
Query: 360 EAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGP 419
EA Q+LKGVPD EV++VK EIK K+ KK NVQDR KN VAVKDVVR++EGP KGKQGP
Sbjct: 549 EAIQILKGVPDSSEVSIVKASEIKYKIWKKINVQDRYKNVVAVKDVVRVIEGPSKGKQGP 608
Query: 420 VEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIP 479
V IY+G+LFIHDRH+LEH GFIC + SSCV+ GG + +TP +P
Sbjct: 609 VVQIYKGVLFIHDRHNLEHTGFICTRCSSCVLAGG----------------NFKTPALVP 652
Query: 480 QSPGRYSR---GGPP---AGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSV 533
SP R+ R G P + GR G D LVGT VK+RLGP+KGY GR+V+VK + V
Sbjct: 653 PSPRRFQRADMGYNPGAGGRHQGGRGRRGDDHLVGTYVKIRLGPFKGYSGRLVEVKDKLV 712
Query: 534 RVELESQMKVVTVDRSMIS---DNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMR 590
RVELE+ K+VTV+R IS DNVV TP+Y MGS+TPMHPSRTPLHP MTPMR
Sbjct: 713 RVELEA--KIVTVERKAISDMTDNVVA------TPQYNMGSQTPMHPSRTPLHPCMTPMR 764
Query: 591 DAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAP 650
+GATPIHDGMRTPMR RAWNPY PMSPPRDNWEDGNPGSWGTSP YEA
Sbjct: 765 HSGATPIHDGMRTPMRGRAWNPYMPMSPPRDNWEDGNPGSWGTSP-----------YEAA 813
Query: 651 TPGSGW-ASTPG-GNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGG 708
TPGS W +STPG +Y DAGTP +++ NAPS PMTP+S SYLP TPGG
Sbjct: 814 TPGSDWGSSTPGRSSYRDAGTPINNA----NAPS----------PMTPSSTSYLPTTPGG 859
Query: 709 QPMTPGTGGLDAMSPVIGADNEGPWFMPDIL--VRRSGEESVVGVIREVLPDGSCRVVLG 766
Q MTPGT LD MS IG D E F+P IL V ++GE+ GVIR+VLPDGSC V LG
Sbjct: 860 QAMTPGT-DLDVMSLDIGGDAE-TRFIPGILVNVHKAGEDRNPGVIRDVLPDGSCVVALG 917
Query: 767 SSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKI 826
G G+TI A N++ +V P+K +++KI+GG + G+T K+IG DG DGIVK+D SLD+KI
Sbjct: 918 HRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGSTAKVIGEDGQDGIVKLDESLDIKI 977
Query: 827 LDMAILAKLAQ 837
L + ILAKL
Sbjct: 978 LKLTILAKLVH 988
>sp|Q5ZI08|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2
SV=1
Length = 1079
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 307/893 (34%), Positives = 479/893 (53%), Gaps = 87/893 (9%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI----YSQKVMLVPIREMTDVLAVE 66
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ ++Q+ +VPI+EMTDVL V
Sbjct: 207 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRMGYWNQQ--MVPIKEMTDVLKVV 264
Query: 67 SKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VA 125
+ +L +WVR+K G YK D+A+V V+ + ++++K+IPRID + ++ ++ A
Sbjct: 265 KEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQNQISLKMIPRIDFDRIKARMSLKDWFA 324
Query: 126 KKKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSIS 184
K+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 325 KRKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVI 379
Query: 185 AQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWV 244
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G +
Sbjct: 380 TEGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKI 437
Query: 245 EKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVL 304
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +
Sbjct: 438 LSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFV 497
Query: 305 IILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQV 364
I+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQV
Sbjct: 498 ILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQV 557
Query: 365 LKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHI 423
L +V V+ + + K + + V D +N + VKD+V++++GP G++G + H+
Sbjct: 558 LNMY---GKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHL 614
Query: 424 YRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRI--PQS 481
+RG F+H + +E+ G K+ V+ GGS+ R+ ++ + PRI P
Sbjct: 615 FRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKP---RDVTNFTVGSFAPMSPRISSPMH 671
Query: 482 PGRYSRGGPPAGGRNRGGRGGHDA-LVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQ 540
P + G GG GRG D L+G TV++ GPYKGY G V D + RVEL S
Sbjct: 672 PSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHST 731
Query: 541 MKVVTVDRSMIS----------DNVVVSTPY--RDTPRYGMGSETPMHPSRTPLHPYMTP 588
+ ++VDR ++ + TP TP YG GS TPM+ S+TPLH
Sbjct: 732 CQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLHDGSRT 791
Query: 589 MRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDG-------NPGSWGTSPQYQ- 638
TP+HDG RTP + AW+P P +P R +++E G +P +G +P Q
Sbjct: 792 PHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQT 851
Query: 639 PGSP-PS-----RAYEAPTPG----------SGWA-STPGGNYSDAGTPRDSSSTYVNAP 681
PG P PS + Y TPG S +A +P G+Y + +P+ S + AP
Sbjct: 852 PGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAVPSPQGSYQPSPSPQ---SYHQVAP 908
Query: 682 SP--YLPS-TPGGQPMTPNSASYL----PGTPGGQPMTPGT---GGLDAMSPVIGADNEG 731
SP Y + +P TP+ +Y P G PMTPG GG + +P G +
Sbjct: 909 SPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQSS 968
Query: 732 P-WFMPDILVR------RSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIV 784
W DI V+ S GVIR V G C V L S +I++ +E V
Sbjct: 969 SDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLEPV 1025
Query: 785 PPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQ 837
P K++K+K++ G R ATG L+ +DG DGIV++D+ +KIL++ L KL +
Sbjct: 1026 TPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLRFLGKLLE 1078
>sp|O55201|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1
SV=1
Length = 1082
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 296/896 (33%), Positives = 475/896 (53%), Gaps = 91/896 (10%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI----YSQKVMLVPIREMTDVLAVE 66
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ ++Q+ +VPI+EMTDVL V
Sbjct: 208 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQ--MVPIKEMTDVLKVV 265
Query: 67 SKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VA 125
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ A
Sbjct: 266 KEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFA 325
Query: 126 KKKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSIS 184
K+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 326 KRKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVI 380
Query: 185 AQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWV 244
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G V
Sbjct: 381 TEGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKV 438
Query: 245 EKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVL 304
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +
Sbjct: 439 LSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFV 498
Query: 305 IILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQV 364
I+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQV
Sbjct: 499 ILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPRTVGVIVRLERETFQV 558
Query: 365 LKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHI 423
L +V V+ + + K + + V D ++N + VKD+V++++GP G++G + H+
Sbjct: 559 LNM---HGKVVTVRHQAVTQKKDNRFAVALDSDQNNIHVKDIVKVIDGPHSGREGEIRHL 615
Query: 424 YRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGD--AYSRFNSLRTPPRIPQS 481
YR F+H + +E+ G K+ V+ GGS+ N ++ + + P P +
Sbjct: 616 YRSFAFLHCKKLVENGGMFVCKARHLVLAGGSKPRDVTNLTVGGFTPMSPRISSPMHPSA 675
Query: 482 PGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQM 541
G++ G P G GR ++ L+G TV++ GPYKGY G V D + RVEL S
Sbjct: 676 EGQHGGFGSPGGMSRGRGRRDNE-LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTC 734
Query: 542 KVVTVDRSMISDNVV-----VSTPYRDTPRYGMGSETPMH--PSRTPLHPYMTPMRD--- 591
+ ++VDR ++ +++ Y TP Y GS+TPM+ SRTP++ TP++D
Sbjct: 735 QTISVDRQRLTTVDSQRPGGMTSTYGRTPMY--GSQTPMYGSGSRTPMYGSQTPLQDGSR 792
Query: 592 ----AGATPIHDGMRTPMRDRAWNPYTPMSPPR---------DNWEDGNPGSWG------ 632
TP+HDG RTP + AW+P P +P R D+ +P ++G
Sbjct: 793 TPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQ 852
Query: 633 -----------TSPQYQPGSPPSRA---------YEAPTPGSGWASTPGGNYSDAGTPRD 672
+PQY P +P + A Y AP+P + +P P
Sbjct: 853 TPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSP 912
Query: 673 SSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGT---GGLDAMSPVIGAD- 728
+ ++P+ Y P TP PM AS P G PMTPG GG + +P G +
Sbjct: 913 AGYQNTHSPASYHP-TPS--PMA-YQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQ 968
Query: 729 NEGPWFMPDILVRRSG---EESVV---GVIREVLPDGSCRVVLGSSGNGDTITALPNEIE 782
N W DI V+ + +V GVIR V G C V L S +I++ +E
Sbjct: 969 NSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLE 1025
Query: 783 IVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVS-LDVKILDMAILAKLAQ 837
+ P K +K+K++ G R ATG L+ +DG DGI+++D+ +KIL++ L KL +
Sbjct: 1026 PITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIKILNLRFLGKLLE 1081
>sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1
SV=1
Length = 1087
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 296/905 (32%), Positives = 461/905 (50%), Gaps = 106/905 (11%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI----YSQKVMLVPIREMTDVLAVE 66
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ ++Q+ +VPI+EMTDVL V
Sbjct: 210 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQ--MVPIKEMTDVLKVV 267
Query: 67 SKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VA 125
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ A
Sbjct: 268 KEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFA 327
Query: 126 KKKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSIS 184
K+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 328 KRKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVI 382
Query: 185 AQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWV 244
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G +
Sbjct: 383 TEGVKPTLSELEKFEDQPEGIDLEVVTEST--GKEREHNFQPGDNVEVCEGELINLQGKI 440
Query: 245 EKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVL 304
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +
Sbjct: 441 LSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFV 500
Query: 305 IILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQV 364
I+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQV
Sbjct: 501 ILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQV 560
Query: 365 LKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHI 423
L +V V+ + + K + + V D +N + VKD+V++++GP G++G + H+
Sbjct: 561 LNMY---GKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHL 617
Query: 424 YRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPG 483
+R F+H + +E+ G K+ V+ GGS+ N P SP
Sbjct: 618 FRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTN---------FTVGGFAPMSPR 668
Query: 484 RYSRGGPPAGGRNRGGRGGH--------------DALVGTTVKVRLGPYKGYRGRVVDVK 529
S P AGG+ G + L+G TV++ GPYKGY G V D
Sbjct: 669 ISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDAT 728
Query: 530 GQSVRVELESQMKVVTVDRSMIS----------DNVVVSTPY--RDTPRYGMGSETPMHP 577
+ RVEL S + ++VDR ++ + TP TP YG GS TPM+
Sbjct: 729 ESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYG 788
Query: 578 SRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR---------DNWEDGNP 628
S+TPL TP+HDG RTP + AW+P P +P R D+ +P
Sbjct: 789 SQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSP 848
Query: 629 GSWG-----------------TSPQYQPGSPPSRA---------YEAPTPGSGWASTPGG 662
++G +PQY P +P + A Y AP+P + +P
Sbjct: 849 QAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSP 908
Query: 663 NYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGT---GGLD 719
P + ++P+ Y P TP PM AS P G PMTPG GG +
Sbjct: 909 QSYHQVAPSPAGYQNTHSPASYHP-TPS--PMA-YQASPSPSPVGYSPMTPGAPSPGGYN 964
Query: 720 AMSPVIGAD-NEGPWFMPDILVRRSG---EESVV---GVIREVLPDGSCRVVLGSSGNGD 772
+P G + N W DI V+ + VV GVIR V G C V L S
Sbjct: 965 PHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSVYLKDSEKVV 1023
Query: 773 TITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAIL 832
+I++ +E + P K +K+K++ G R ATG L+ +DG DGIV++D+ +KIL++ L
Sbjct: 1024 SISS--EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFL 1081
Query: 833 AKLAQ 837
KL +
Sbjct: 1082 GKLLE 1086
>sp|Q5R405|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2
SV=1
Length = 1083
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 296/905 (32%), Positives = 460/905 (50%), Gaps = 106/905 (11%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI----YSQKVMLVPIREMTDVLAVE 66
LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+ ++Q+ +VPI+EMTDVL V
Sbjct: 206 LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQ--MVPIKEMTDVLKVV 263
Query: 67 SKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGRE-VA 125
+ +L +WVR+K G YK D+A+V V+ + +++K+IPRID + ++ ++ A
Sbjct: 264 KEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFA 323
Query: 126 KKKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSIS 184
K+K F PP R + ++ R L V GD+ G + GFL+K+ +M ++
Sbjct: 324 KRKKFKRPPQRLFDAEKIRSLGGDVAS-----DGDFLIFEGNRYSRKGFLFKSFAMSAVI 378
Query: 185 AQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWV 244
+ ++PT ELEKF E + ++ + ST ++ +F GD V V +G+L NL+G +
Sbjct: 379 TEGVKPTLSELEKFEDQPEGIDLEVVTEST--GREREHNFQPGDNVEVCEGELINLQGKI 436
Query: 245 EKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVL 304
VD + I P+ + L L ++EL KYF+ G+HVKV++G G TG++++VE++ +
Sbjct: 437 LSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFV 496
Query: 305 IILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQV 364
I+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R+E E FQV
Sbjct: 497 ILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQV 556
Query: 365 LKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHI 423
L +V V+ + + K + + V D +N + VKD+V++++GP G++G + H+
Sbjct: 557 LNMY---GKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHL 613
Query: 424 YRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPG 483
+R F+H + +E+ G K+ V+ GGS+ N P SP
Sbjct: 614 FRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTN---------FTVGGFAPMSPR 664
Query: 484 RYSRGGPPAGGRNRGGRGGH--------------DALVGTTVKVRLGPYKGYRGRVVDVK 529
S P AGG+ G + L+G TV++ GPYKGY G V D
Sbjct: 665 ISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDAT 724
Query: 530 GQSVRVELESQMKVVTVDRSMIS----------DNVVVSTPY--RDTPRYGMGSETPMHP 577
+ RVEL S + ++VDR ++ + TP TP YG GS TPM+
Sbjct: 725 ESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYG 784
Query: 578 SRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR---------DNWEDGNP 628
S+TPL TP+HDG RTP + AW+P P +P R D+ +P
Sbjct: 785 SQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSP 844
Query: 629 GSWG-----------------TSPQYQPGSPPSRA---------YEAPTPGSGWASTPGG 662
++G +PQY P +P + A Y AP+P + +P
Sbjct: 845 QAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSP 904
Query: 663 NYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGT---GGLD 719
P + ++P+ Y P TP PM AS P G PMTPG GG +
Sbjct: 905 QSYHQVAPSPAGYQNTHSPASYHP-TPS--PMA-YQASPSPSPVGYSPMTPGAPSPGGYN 960
Query: 720 AMSPVIGAD-NEGPWFMPDILVRRSG---EESVV---GVIREVLPDGSCRVVLGSSGNGD 772
+P G + N W DI V+ + VV GVIR V G C V L S
Sbjct: 961 PHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSVYLKDSEKVV 1019
Query: 773 TITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAIL 832
+I++ +E + P K +K+K++ G R ATG L+ +DG DGIV++D +KIL++ L
Sbjct: 1020 SISS--EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDPDEQLKILNLRFL 1077
Query: 833 AKLAQ 837
KL +
Sbjct: 1078 GKLLE 1082
>sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1
SV=1
Length = 1084
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 301/905 (33%), Positives = 466/905 (51%), Gaps = 97/905 (10%)
Query: 3 KCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI----YSQKVMLVPIRE 58
+C D + LQI+SV+A +H+K YIY+EA K+ HVK A +G+ N+ ++Q+ +VPI+E
Sbjct: 203 QCTD--TPLQIKSVVAPEHVKGYIYVEAYKQTHVKAAIEGVGNLRMGFWNQQ--MVPIKE 258
Query: 59 MTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANK 118
MTDVL V + +L +WVR+K G YK D+A+V V+ + +++K+IPRIDL + +
Sbjct: 259 MTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQNTISLKMIPRIDLDRIKAR 318
Query: 119 LEGRE-VAKKKPFV-PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYK 176
+ ++ AK+K F PP R + ++ R L V GD+ + GFL+K
Sbjct: 319 MSMKDWFAKRKKFKRPPQRLFDAEKIRSLGGEVSH-----DGDFMIFEANRYSRKGFLFK 373
Query: 177 TVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGD 236
+ +M ++ + ++PT ELEKF E + ++ + +T ++ + GD V V +G+
Sbjct: 374 SFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETT--GKEREHNLQAGDNVEVCEGE 431
Query: 237 LKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMV 296
L NL+G + VD + I P+ + L L + EL KYF G+HVKV++G G TG++
Sbjct: 432 LINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVIAGRYEGDTGLI 491
Query: 297 LKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIR 356
++VE++ +I+ SD T +++V D+ SE +G+ G +E +LV LD + GVI+R
Sbjct: 492 VRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELVQLDPQTVGVIVR 551
Query: 357 VESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKG 415
+E E FQVL +V V+ + + + + + V D +N + VKD+V++++GP G
Sbjct: 552 LERETFQVLNM---HGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVKVIDGPHSG 608
Query: 416 KQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTP 475
++G + HI+RG F+H + +E+ G K+ V+ GGS+ R+ ++
Sbjct: 609 REGEIRHIFRGFAFLHCKKLVENGGMFVCKARHLVLAGGSKP---RDVTNFTVGGFAPMS 665
Query: 476 PRIPQSP--------GRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVD 527
PRI SP + GG GG RG + L+G TV++ GPYKGY G V D
Sbjct: 666 PRI-SSPMHPGGGGQPQRGGGGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGYIGVVKD 724
Query: 528 VKGQSVRVELESQMKVVTVDRSMIS----------DNVVVSTPY--RDTPRYGMGSETPM 575
+ RVEL S + ++VDR ++ + + TP TP YG GS TPM
Sbjct: 725 ATESTARVELHSTCQTISVDRQRLTTVGGKERQGRSSTHLRTPMYGSQTPIYGTGSRTPM 784
Query: 576 HPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSP--PRDNWE---DGNP-- 628
+ S+TPLH TP+HDG RTP + AW+P P +P P D +E D P
Sbjct: 785 YGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDDEYEFAYDDEPSP 844
Query: 629 ---GSWGT----------------SPQYQPGSPPSRA---------YEAPTPGSGWASTP 660
G GT +PQY P +P + A Y AP+P + +P
Sbjct: 845 SPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQPSP 904
Query: 661 GGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGT---GG 717
P ++P+ Y P TP PM AS P G PMTPG GG
Sbjct: 905 SPQSYHQVAPSPVGYQNTHSPASYHP-TPS--PMA-YQASPSPSPVGYSPMTPGAPSPGG 960
Query: 718 LDAMSPVIGADN-EGPWFMPDILVR------RSGEESVVGVIREVLPDGSCRVVLGSSGN 770
+ +P D W DI+VR G + G+IR V G C V L +
Sbjct: 961 YNPHTPGSNIDQASNDWVTTDIMVRVKDTFLDGGVINQTGIIRSVT-GGMCSVFLQDTEK 1019
Query: 771 GDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMA 830
+I++ +E V P K +K+K++ G R ATG L+ +DG DGIV++++ +KIL++
Sbjct: 1020 VVSISS--EHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLR 1077
Query: 831 ILAKL 835
L KL
Sbjct: 1078 FLGKL 1082
>sp|Q9V460|SPT5H_DROME Transcription elongation factor SPT5 OS=Drosophila melanogaster
GN=Spt5 PE=1 SV=1
Length = 1078
Score = 342 bits (876), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 276/871 (31%), Positives = 427/871 (49%), Gaps = 89/871 (10%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY--SQKVMLVPIREMTDVLAVESK 68
LQI+S+IA + +K YIY+EA K+ HVK + N+ K +VPI+EMTDVL V +
Sbjct: 247 LQIKSIIAPEGVKGYIYLEAYKQTHVKTCIDNVGNLRMGKWKQEMVPIKEMTDVLKVVKE 306
Query: 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKL-----EGRE 123
+ L WVR+K G YK D+A+V VD + +V +KL+PRID + L E +
Sbjct: 307 QVGLKVKQWVRLKRGLYKDDIAQVDYVDLAQNQVHLKLLPRIDYTRMRGALRTTATESDD 366
Query: 124 VAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSI 183
+KK P + + + R + V GD+ G + GFLYK +M +I
Sbjct: 367 SKRKKKRRPAAKPFDPEAVRAIGGEVHS-----DGDFLLFEGNRYSRKGFLYKNFTMSAI 421
Query: 184 SAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGH-FMKGDAVIVIKGDLKNLKG 242
+ ++PT ELE+F E E ++ + T+ + H F GD V V GDL+NL+
Sbjct: 422 LSDGVKPTLAELERFEESPE--EVNLEIMGTVKDDPTMAHSFSMGDNVEVCVGDLENLQA 479
Query: 243 WVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQH 302
+ +D + + P+ + L L + EL KYF+ G+H +V++G G TG++++VE
Sbjct: 480 KIVAIDGTMITVMPKHQDLKDPLIFKASELRKYFKTGDHARVLAGRYEGETGLIIRVEPT 539
Query: 303 VLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAF 362
++++SD T ++ V D+ S+V TG+ +G ++ D+V LD+ + GVI+R+E E F
Sbjct: 540 RVVLVSDLTNHELEVLPRDLQLCSDVATGVDCLGQFQWGDMVQLDSQNVGVIVRLERENF 599
Query: 363 QVL----KGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQG 418
VL K + +P AL K +E + + D ++N + +DVV+++EGP G+ G
Sbjct: 600 HVLGMNGKCIECKP-TALHKRKE-----NRHTVALDADQNQIRRRDVVKVMEGPHAGRSG 653
Query: 419 PVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSR-FNSLRTPPR 477
++H+YR + F+H R + E+ G K+ + GGS+ G F S PR
Sbjct: 654 EIKHLYRSLAFLHCRMYTENGGIFVCKTRHLQLAGGSKTTVSNAGIVGGLGFMS----PR 709
Query: 478 I--PQSPGRYSRGGPPAGGRNRGGRGGHD-ALVGTTVKVRLGPYKGYRGRVVDVKGQSVR 534
I P P A G G R D ++G T+K+ GPYKG G V D + R
Sbjct: 710 IQSPMHPSGGRGARGGARGGRGGFRVTRDREILGKTIKISGGPYKGAVGIVKDATESTAR 769
Query: 535 VELESQMKVVTVDRSMISDNVV------VSTPYRDTPRY-GMGSETPMHP---SRTPLHP 584
VEL + + ++VDR+ I+ V VST R R G G++TP + S+TPL
Sbjct: 770 VELHTSCQTISVDRNHIAIVGVTGKEGSVSTYGRTPARTPGYGAQTPSYTAAGSKTPLVG 829
Query: 585 YMTPMRDAGA-------TPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQY 637
TP D TP HDG TP R AW+P +P R+N D + SP Y
Sbjct: 830 SQTPNWDTDTRTPYGTMTPSHDGSMTP-RHGAWDPTANTTPARNNDFDYSLEEPSPSPGY 888
Query: 638 QPGSP---PSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSST---YVNAPSP--YLPSTP 689
P +P + + TPG+ + S + + S Y+N PSP Y P+TP
Sbjct: 889 NPSTPGYQMTSQFAPQTPGTLYGSDRSYSPFNPSPSPAPSPYPVGYMNTPSPSTYSPNTP 948
Query: 690 GGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESV- 748
GG P +P Y P TPG LD+ + G W DI VR +
Sbjct: 949 GGIPQSP----YNPQTPGAS--------LDS--------SMGDWCTTDIEVRIHTHDDTD 988
Query: 749 ----VGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATG 804
G+IR V +G C V L +++ + + V P D+ KI+ G R + G
Sbjct: 989 LVGQTGIIRTV-SNGVCSVFLRQEDR--SVSIVSEHLAPVLPCNGDEFKIIYGDDRESVG 1045
Query: 805 KLIGVDGTDGIVKVDVSLDVKILDMAILAKL 835
+++ DG + +++ ++K+L + L K+
Sbjct: 1046 RVLSKDGDVFVCRINE--EIKLLPINFLCKM 1074
>sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans
GN=spt-5 PE=3 SV=3
Length = 1208
Score = 283 bits (723), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 240/776 (30%), Positives = 375/776 (48%), Gaps = 106/776 (13%)
Query: 1 MQKCI---DKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIR 57
M+KC+ QI+SV+ + LK IYIEA K++HV A +G + + +VPI+
Sbjct: 203 MRKCLAVEHTNEPFQIKSVVVKEGLKGMIYIEAFKQSHVMSAIEGFSALNQFTITMVPIK 262
Query: 58 EMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQ---- 113
+M DVL V L ++VR+K YK DLA V VD + RV +KLIPR+D Q
Sbjct: 263 DMVDVLRVVKDIPQLKLGSYVRLKRTMYKDDLAVVDLVDIAQNRVNLKLIPRVDYQKRRG 322
Query: 114 ALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGF 173
A+ + K++P P+ + D +E+ + +T F G F+ GF
Sbjct: 323 AMRTDADKNYKLKRRPM---PKLFDQDTIKEVGGEI------VTDGDFLVFEGNHFRRGF 373
Query: 174 LYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVI 233
LYK + +I A ++PT ELEKF+ E+ + L T + F+ GD V V
Sbjct: 374 LYKYFPINAIQADGVKPTLGELEKFQ---ESSDDLKRELETASLKDTENPFVPGDIVEVK 430
Query: 234 KGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGAT 293
G+L NL+G V VD V + P+ + L + + +N+ EL KYF+ G+H KV+SG G T
Sbjct: 431 AGELVNLRGKVMTVDGTKVVMMPDQEDLKEAITLNAHELRKYFKEGDHAKVISGRYEGHT 490
Query: 294 GMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNN-SFG 352
G++++V+ I+LSD E+++V D+ ++VTTG+ +G ++ DLV LD+ + G
Sbjct: 491 GLIVRVKDSTAIVLSDLGMEELKVRVRDLQLCADVTTGVDSLGQFQYHDLVQLDHTGNVG 550
Query: 353 VIIRVESEAFQVLK--GVPDR--PEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRI 408
VI+R+E E +VL GV +R P+ A++ ++++ + V D N++ KD+V++
Sbjct: 551 VIVRLEKEHLEVLNMHGVVNRIKPQ-AIIAKKDVRF-----AKVLDSQNNSIEAKDLVKV 604
Query: 409 VEGPCKGKQ-------GPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRAN--- 458
+ GP ++ G V + +RG +F++ R ++ G + K ++ G +
Sbjct: 605 IGGPNAKERETDEDPVGEVLYAFRGTVFVYSRKVTKNGGVLVCKPKQLILQGAKKTTSTP 664
Query: 459 -----GDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGR--------------NRGG 499
N A R +S PR PQ R N+
Sbjct: 665 MVSRMASPNPMASPRHSSGGMTPRSPQDGMSSRGSSGGQTPRQGGGGGRGGHFGTANQQK 724
Query: 500 RGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRS---MISDNVV 556
L+G V++ GP KG+ G V D +VRVEL +Q + ++VDR+ ++ D +
Sbjct: 725 VRRDLTLIGKNVRIIKGPMKGHFGIVRDATEDTVRVELHTQCRTISVDRARVMVVGDTGI 784
Query: 557 VS-------------TPYRD---TPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIH-D 599
+ TP RD TP Y GS+TPM+ ++TP++ MTP D G TP + +
Sbjct: 785 TAGSGGGSSFYSSSKTPMRDSGKTPMY--GSKTPMYGAQTPMYGSMTPAYDGGRTPAYGE 842
Query: 600 GMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAY----EAPTPGSG 655
G RTP A+ TP + D + S +P Y S + AY A TP G
Sbjct: 843 GGRTP----AYGSKTPA------YGDLDEHSSSRTPAYGNDSSRTPAYGSADGARTPAYG 892
Query: 656 WASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPM---TPN--SASYLPGTP 706
ST GG G+ +S + + TPG + M TPN S+S P P
Sbjct: 893 --STEGGRTPAYGSMDNSRTPAYDDSG----RTPGYESMPSRTPNYDSSSKTPAYP 942
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 147/343 (42%), Gaps = 86/343 (25%)
Query: 564 TPRYGM--GSETPMHPS----RTPLHPYMTPMR-----DAGATPIHDGM--RTPMRDRAW 610
TP YG G+ TP + S RTP + M R D+G TP ++ M RTP D +
Sbjct: 877 TPAYGSADGARTPAYGSTEGGRTPAYGSMDNSRTPAYDDSGRTPGYESMPSRTPNYDSSS 936
Query: 611 NPYTPMSPPRDNWED----GNPGSWGTSPQYQPGSP------PSR--AYEAPTPGSGWAS 658
TP P ++ N SP Y+P +P P+R A+ + TPG
Sbjct: 937 K--TPAYPESEHSARTPAYNNDYDIPLSPAYEPDAPEAYDNAPARTPAFVSRTPGYDTYE 994
Query: 659 TPGGNYS-DAGTPRD------SSSTYVNAPSPYLPSTPGG--QPMTPNSASYLPGTPG-G 708
Y DA T + SS TY + P Y+ TPG P TP +Y TPG
Sbjct: 995 NSSPTYEPDAATKVEEDIGDTSSPTYDSPPHSYVVPTPGAMLNPATP--GAYHVDTPGFA 1052
Query: 709 QPMTPGTGG----LDAMSPVIGADN-------------------EGPWFMPDILV----- 740
PMTPG+GG A SP G D+ +G W + ++ V
Sbjct: 1053 APMTPGSGGAYDQYVAPSPFAGYDSNNYNNADGAIEQIPDHFLAQGVWIVQNLCVQIKDH 1112
Query: 741 --RRSGEESVV-----GVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIK 793
R +G E+++ G + +PD C + + + D +T + P+ D +
Sbjct: 1113 EGRFNGREAIIKDVTDGKVDVYMPDHKCNLEV----DFDQLTPM-------KPQPGDDAR 1161
Query: 794 IMGGPHRGATGKLIGVDGTDGIVKVDVSL-DVKILDMAILAKL 835
++ G G +G+L+ +DG + +++ + D++++++ + K+
Sbjct: 1162 VIFGQDAGHSGQLVSMDGFEAVIRSQEDMSDMRVINIGLCCKM 1204
>sp|Q4PIC4|SPT5_USTMA Transcription elongation factor SPT5 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=SPT5 PE=3 SV=1
Length = 1057
Score = 252 bits (643), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 176/568 (30%), Positives = 292/568 (51%), Gaps = 48/568 (8%)
Query: 9 SELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQK---VMLVPIREMTDVLAV 65
S ++I S D + +Y+EA + V +AC GL Y+++ + L+PI EM D+L +
Sbjct: 336 SPMRIISAFCRDSIPGRVYVEARRADDVVKACNGLAGAYARQTTSLHLIPISEMADLLKL 395
Query: 66 ESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVA 125
+ ++ WVR+K G Y GDLA+V+DV + V +K+IPRIDL + L +
Sbjct: 396 QKVQNEIQVGGWVRIKRGKYAGDLAQVLDVSENGEEVGLKMIPRIDLNPKDSGLYTDSLG 455
Query: 126 KKK-----------PFVPPPRFMNVDEARELHIR-VERRRDPMTGDYFENIGGMLFKDGF 173
+K+ F PP RF N +E ++ + R +R F+N ++DG+
Sbjct: 456 RKRKKGAGSSATTVAFRPPQRFFNPEEVQKAYPRDTPTKRGSQW--VFQNDS---YRDGY 510
Query: 174 LYKTVSMKSISAQNIQPTFDELEKFRTPGEN---------GESDIASLSTLFANRKKGHF 224
L K V + I +N+ PT DE+ KF GE+ G D++ ++ +
Sbjct: 511 LEKDVRVTGIITENVNPTLDEITKF--AGESSIEDGINKLGAVDLSLIADASKKATEALI 568
Query: 225 MKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGL-PKTLAVNSKELCKYFEPGNHVK 283
D V + +G+ + G V+ ++ E + I+ E + L + + V ++ + K F+PG+H+K
Sbjct: 569 QPKDQVEIFEGEQAGVYGTVKAINNEVITIQLEHEDLMDQIVEVPARSVRKRFKPGDHIK 628
Query: 284 VVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDL 343
V+SG A TG+V+KVE +V LSD + +++ VF+ D+ +++EV +G+ I YEL +L
Sbjct: 629 VMSGKHADETGLVVKVEDNVTTFLSDLSMQEVSVFSKDIRQAAEVGSGVNVISGYELHNL 688
Query: 344 VLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE-KKSNVQDRNKNTVAV 402
V LD + G+I +E E+F+VL +V VK +I K + ++ D + N +
Sbjct: 689 VQLDAQTVGIIFNIERESFKVLDQT---GQVVTVKPHQISTKKDTSRAFALDHDGNEIRA 745
Query: 403 KDVVRIVEGP-CKGKQGPVEHIYRG-ILFIHDRHHLEHAGFICAKSSSC--VVVGGSRAN 458
D+V+ V GP + +QG V HIY+ ++F+H+R + E+ G A++ S +
Sbjct: 746 GDMVKEVAGPFSRLRQGQVLHIYQSMVVFLHNREYTENGGVFIARARSLEPLAPKSVSTK 805
Query: 459 GDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPY 518
++G S+ N P + G + G R GGR H G V + GPY
Sbjct: 806 TKKDGGDLSKMN-----PALSNLSGGGANDVRVEGVRRFGGRDMHK---GKNVAIIKGPY 857
Query: 519 KGYRGRVVDVKGQSVRVELESQMKVVTV 546
K YRGR+ + G R+EL S K +TV
Sbjct: 858 KTYRGRITETTGNMARIELTSVSKPITV 885
>sp|O13936|SPT5_SCHPO Transcription elongation factor spt5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spt5 PE=1 SV=1
Length = 990
Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 228/773 (29%), Positives = 356/773 (46%), Gaps = 109/773 (14%)
Query: 1 MQKCID---KGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIR 57
M+K +D S L+I S D L YIY+EA K++HV +A G+ N+Y+ ++LVPI+
Sbjct: 260 MRKAMDLQYTSSPLEIISAFQRDSLVGYIYVEARKQSHVLDALNGVLNVYTNNMILVPIK 319
Query: 58 EMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALAN 117
EM D+L V+ + ++L +VR++ G Y GDLA+V ++ V+++PRID ++
Sbjct: 320 EMPDLLKVQKQVVELLPGAYVRIRRGKYAGDLAQVDNLSENGLTARVRIVPRID---YSD 376
Query: 118 KLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKT 177
L+ + A + P R N EA + + +R P F N F+DGFL K
Sbjct: 377 GLKRKNSATR----PQARLFNESEAFKSNPSKFSKRGPRLF-LFNN---EEFEDGFLVKD 428
Query: 178 VSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGH--FMKGDAVIVIKG 235
+ + S+ + + PT DE+ KF N ++ LS+L + K GH F GD V V G
Sbjct: 429 IRISSLITEGVNPTLDEVSKF-----NPNNEDLDLSSLALSVKGGHAEFQPGDHVEVYVG 483
Query: 236 DLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGM 295
+ + G VE V +V GL L V S+ L K F G++VKV++G TGM
Sbjct: 484 EQTGVSGVVENV-RGSVITMVSSDGL--RLDVPSRGLRKRFRHGDYVKVIAGKYKDDTGM 540
Query: 296 VLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVII 355
V+++ + + LSDT ++ VF+ D+ E+S + YEL DLV LD N+ I
Sbjct: 541 VVRISKDEVTFLSDTLMTELTVFSRDLGEASSAQAVNSA---YELHDLVQLDVNTVACIF 597
Query: 356 RVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNV-QDRNKNTVAVKDVVRIVEGPCK 414
V+ + ++V + V V +I + + V DRN + + D V+ V G +
Sbjct: 598 SVDRDTYKV---IDQNGGVRTVLASQITMRHSNRRGVATDRNGAEIRIGDKVKEVGG--E 652
Query: 415 GKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRT 474
GKQG + HIYR +F+H+R E+ G A+S + + A G R ++ N
Sbjct: 653 GKQGTILHIYRAFVFLHNRDIAENNGVFSARSRNVATIA---AKGARISADLTKMN---- 705
Query: 475 PPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVR 534
P + P PP R G D +G TV++R GP KG G + D + R
Sbjct: 706 -PALSNGPAL-----PPVANLKR--TIGRDKAIGATVRIRRGPMKGLLGVIKDTTDANAR 757
Query: 535 VELESQMKVVTVDRSMI-----SDNVVVSTPYRD-----------------TPRYGMGSE 572
VEL + K+VT+ + + + ++ T + + P + G+
Sbjct: 758 VELHTGNKMVTIPKENLLYTTKTGELISYTEFIERSRGIRPGSISTADGPNVPNWAQGAR 817
Query: 573 TP--MHPSRTPLHPY--MTPMRDAGA-TPI-HDGMRTPMRDR-----AWN-----PYTPM 616
TP + SRTP TP ++G+ TP + G RTP + AWN P
Sbjct: 818 TPAVANGSRTPAWNTGSRTPAWNSGSKTPAWNSGSRTPAWNSGNKTPAWNAGSRTPAWNS 877
Query: 617 SPPRDNWEDGNPG-SWGT---SPQYQPG-----------SPPSRAYEAPTPGSG----WA 657
W GN +W + +P + G +P A + P +G W
Sbjct: 878 GNKTPAWNVGNKTPAWNSGAKTPAWNAGNKTPSWNNGTKTPAWNANQTPMVANGTNTSWG 937
Query: 658 STPG-GNYSDAGTPRDSSSTYVNAPSP--YLPSTPGG-QPMTPNSASYLPGTP 706
TP G +S+ + +S AP+P + TPGG +S Y+P +P
Sbjct: 938 QTPAYGGFSETNWDTEDNSKPYTAPTPGAWAAPTPGGWDDEEGDSPKYVPPSP 990
>sp|Q4WP96|SPT5_ASPFU Transcription elongation factor spt5 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt5
PE=3 SV=1
Length = 1058
Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 230/777 (29%), Positives = 374/777 (48%), Gaps = 80/777 (10%)
Query: 1 MQKCIDK---GSELQIRSVIALDH---LKNYIYIEADKEAHVKEACKGLRNIYSQ-KVML 53
+QK I++ GS IR + A + + YIY+EA ++A V EA + + N+Y + K++L
Sbjct: 260 IQKRIEERPPGSRKPIRIISAFERGGAMSGYIYVEARRQADVMEALEDMSNVYPRTKMIL 319
Query: 54 VPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQ 113
VP+REM D+L V+ K+ +L+ WVR+K G Y+GDLA++ +VD VTV+L+PR+D
Sbjct: 320 VPVREMPDLLRVQ-KSEELNPGGWVRIKRGKYQGDLAQIEEVDTNGLDVTVRLVPRLDYG 378
Query: 114 ALANKLEGR---EVAKKKPFV------PPPRFMNVDEARELHIRVERRRDPMTGDYFENI 164
N+ G ++ +K+P + PP R + EA++ H + + G + +
Sbjct: 379 L--NEDSGAPVVDIKRKRPGMASGGPRPPQRLFSEAEAKKRHGKYLSATSGLGGKSWSYL 436
Query: 165 GGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES--DIASLS-TLFANRKK 221
G + DGFL K + ++ + +N+ P +E+ F ++G S D+ASL+ TL + +
Sbjct: 437 G-ETYIDGFLIKDMKVQHLITKNVNPRLEEVTMFARGSDDGTSNLDLASLAETLKNSTAE 495
Query: 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIR---PEMKGLPKTLAVNSKELCKYFEP 278
++ GD V V +G+ + L G + V ++ E+ G + + K L K F
Sbjct: 496 ESYLPGDPVEVFRGEQQGLVGRTTSTRGDIVTLQVTEGELAG--QMIEAPVKSLRKRFRE 553
Query: 279 GNHVKVVSGTQ-AGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGIT-KIG 336
G+HVKV+ G++ GMV++V+ + +LSD + ++I VF+ D+ S+E TG+ K+G
Sbjct: 554 GDHVKVIGGSRYQDELGMVVQVKDDTVTLLSDMSMQEITVFSKDLRLSAE--TGVDGKLG 611
Query: 337 DYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNV--QD 394
+++ DLV LD ++ +++V+ E+ +VL + V +I K+ + + D
Sbjct: 612 MFDVHDLVQLDASTVACVVKVDRESLRVLD---QNGSIRTVLPSQIANKITPRRDAVATD 668
Query: 395 RNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGG 454
RN + + D VR + G + G + HIYR LF+H++ E++G + ++++ V V
Sbjct: 669 RNGAEIRIGDTVRELYG--DQRSGVILHIYRSFLFLHNKAQAENSGIVVVRTTNVVTV-- 724
Query: 455 SRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVR 514
S G G ++ N IP + GPP GHD L+G TV+VR
Sbjct: 725 SAKGGRSTGPDLTKMNPALMRSGIPGA-----SMGPPKSF-------GHDRLIGKTVQVR 772
Query: 515 LGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETP 574
GPYKG G V D RVEL S+ K+VT+ + ++ V+ D R G G P
Sbjct: 773 KGPYKGLVGIVKDSTDVQARVELHSRNKLVTIPKDVLIVKDPVTGQTLDMSRKG-GQRVP 831
Query: 575 MHPSRTPLHPY---MTPM--RDAGATPIHDG---MRTPM-------RDRAWN-PYTPMSP 618
S P + TPM D+ TP G RTP R AW + S
Sbjct: 832 YGASAAPPSGWSGGRTPMAAADSSRTPAWGGASSARTPAWAGISGSRTPAWKMDGSRTSN 891
Query: 619 PRDNWEDGNPGSWGTSPQYQPGS-------PPSRAYEAPTPGS---GWASTPGGNYSDAG 668
P D G+ +P + G+ S ++A GS W G + A
Sbjct: 892 PYDGSRTAYGGAGSRTPAWNAGARTPYDSGSGSSGFDAFAAGSRTPAWGGANAGGRTPAW 951
Query: 669 TPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVI 725
+ S+ + Y PGG P +Y TPG TPG A +P +
Sbjct: 952 SASSSAGSGNRDSRGYDAPNPGGAYSAPTPGAYTAPTPGASAPTPGAWADSAPTPGV 1008
>sp|P0CR70|SPT5_CRYNJ Transcription elongation factor SPT5 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT5 PE=3 SV=1
Length = 1152
Score = 235 bits (599), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 225/791 (28%), Positives = 361/791 (45%), Gaps = 106/791 (13%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY-SQKVMLVPIREMTDVLAVESKA 69
+ + SV D + I+IEA + A V A G+ I+ S+ V LVPI EM +L ++ K
Sbjct: 237 IDVISVFCRDSIPGMIFIEARQSASVSAAVNGIVGIFMSRGVNLVPIEEMAPLLKMKKKD 296
Query: 70 IDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVT-VKLIPRIDLQALANKLEGREVAKKK 128
++L+ WVRMK G + GDLA+VVDVD + V +K IPRIDL + E + K
Sbjct: 297 VNLTPGMWVRMKRGKHAGDLAQVVDVDQITSGVVGIKFIPRIDLTPREKRKERIAIGKPG 356
Query: 129 PFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNI 188
PP R D+ R+++ R R+ F+N + DGF K V + +++ +++
Sbjct: 357 GVRPPARLFAYDDVRKIYGRQSVRQGAQGSYLFDND---EYVDGFCIKDVKIPAVATEDV 413
Query: 189 QPTFDELEKFRTPGEN-GESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKV 247
PT +E+ +F ++ + D+++++ N GD + V +G+ L G VE V
Sbjct: 414 NPTLEEISRFTGDDDSTAKFDLSAIADANKNLSTSLLFPGDKIEVYEGEQTGLYGIVEAV 473
Query: 248 DEENVHIRPEMKGLP-KTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLII 306
+ + I+ E + +T+ V ++ + K F+ G HVKV+ G A+GMV++V+ ++ +
Sbjct: 474 SPDVIAIKAEGGEVHGQTVEVPARSVRKRFDVGEHVKVLGGKHTDASGMVVEVKGDIVTL 533
Query: 307 LSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLK 366
+SD +++I+VF+ D+ ++++ T G Y++ D+V+LD+ + GV+ +VE ++L
Sbjct: 534 MSDLGEQEIKVFSKDLRKAADTTNLTVTKGLYDVHDMVMLDSTTAGVVTKVEGGLLRILD 593
Query: 367 GVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRG 426
V+ ++ I+ ++ + D N + V D ++ +G +QG V +I+R
Sbjct: 594 QNGAAKSVSPEQV-SIRRDNKRFAVATDSQGNDMKVGDNMKETDGEM--RQGEVFNIFRS 650
Query: 427 IL-FIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSP-GR 484
I F+++R + ++ G A+++S + V A D ++ N P Q P G
Sbjct: 651 IFVFLYNREYTDNFGVFVARANSLISVTPKSAVND-----LTKIN----PALNQQLPYGG 701
Query: 485 YSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVV 544
S P NR + L+ T V V G KG G + DV+G++ RVEL+ K +
Sbjct: 702 ASLMPAPTANLNR------NRLINTLVVVTKGTSKGLIGVIKDVQGENARVELKHNNKTL 755
Query: 545 TVDRSMISDN---------------VVVSTPYRDTPRYGM------GSETPMHPSRTPLH 583
+V+ + + + Y P G G T MHPS
Sbjct: 756 SVNLASLKRKDQKTGATFPLEMAGIASAAGGYGARPNAGQYDINPYGGATAMHPSMGGQT 815
Query: 584 PYM----TPMRDAGATP------IHDGMRTPMRDRAWNPYTP----MSPPRDNWEDGNPG 629
P + TP G TP + +G +TP NPY +P N G
Sbjct: 816 PALMGGRTPAARFGQTPNPYAAGVQNG-KTP------NPYAAGVGGKTPSAANASGGKTP 868
Query: 630 SWGTS----PQY-------------QPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRD 672
+WG S P Y Q G P+ AY PG TP Y G P
Sbjct: 869 AWGASGGKTPAYGMASGGKTPAYGMQGGKTPN-AYAMAPPGPSGGRTPA--YGAYGRPEA 925
Query: 673 SSST-YVNAP------SPYLPSTPGGQ----PMTPNSASYLPGTPGGQPM-----TPGTG 716
S S V AP +PY TP G P P + P TP G P TPG
Sbjct: 926 SGSRPSVMAPPSAPYSAPYSAPTPAGNGAPTPAIPGNPYTAP-TPYGAPTPYAAPTPGMP 984
Query: 717 GLDAMSPVIGA 727
L A +P GA
Sbjct: 985 SLSAPTPGPGA 995
>sp|P0CR71|SPT5_CRYNB Transcription elongation factor SPT5 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=SPT5 PE=3
SV=1
Length = 1152
Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 225/791 (28%), Positives = 361/791 (45%), Gaps = 106/791 (13%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY-SQKVMLVPIREMTDVLAVESKA 69
+ + SV D + I+IEA + A V A G+ I+ S+ V LVPI EM +L ++ K
Sbjct: 237 IDVISVFCRDSIPGMIFIEARQSASVSAAVNGIVGIFMSRGVNLVPIEEMAPLLKMKKKD 296
Query: 70 IDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVT-VKLIPRIDLQALANKLEGREVAKKK 128
++L+ WVRMK G + GDLA+VVDVD + V +K IPRIDL + E + K
Sbjct: 297 VNLTPGMWVRMKRGKHAGDLAQVVDVDQITSGVVGIKFIPRIDLTPREKRKERIAIGKPG 356
Query: 129 PFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNI 188
PP R D+ R+++ R R+ F+N + DGF K V + +++ +++
Sbjct: 357 GVRPPARLFAYDDVRKIYGRQSVRQGAQGSYLFDND---EYVDGFCIKDVKIPAVATEDV 413
Query: 189 QPTFDELEKFRTPGEN-GESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKV 247
PT +E+ +F ++ + D+++++ N GD + V +G+ L G VE V
Sbjct: 414 NPTLEEISRFTGDDDSTAKFDLSAIADANKNLSTSLLFPGDKIEVYEGEQTGLYGIVEAV 473
Query: 248 DEENVHIRPEMKGLP-KTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLII 306
+ + I+ E + +T+ V ++ + K F+ G HVKV+ G A+GMV++V+ ++ +
Sbjct: 474 SPDVIAIKAEGGEVHGQTVEVPARSVRKRFDVGEHVKVLGGKHTDASGMVVEVKGDIVTL 533
Query: 307 LSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLK 366
+SD +++I+VF+ D+ ++++ T G Y++ D+V+LD+ + GV+ +VE ++L
Sbjct: 534 MSDLGEQEIKVFSKDLRKAADTTNLTVTKGLYDVHDMVMLDSTTAGVVTKVEGGLLRILD 593
Query: 367 GVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRG 426
V+ ++ I+ ++ + D N + V D ++ +G +QG V +I+R
Sbjct: 594 QNGAAKSVSPEQV-SIRRDNKRFAVATDSQGNDMKVGDNMKETDGEM--RQGEVFNIFRS 650
Query: 427 IL-FIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSP-GR 484
I F+++R + ++ G A+++S + V A D ++ N P Q P G
Sbjct: 651 IFVFLYNREYTDNFGVFVARANSLISVTPKSAVND-----LTKIN----PALNQQLPYGG 701
Query: 485 YSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVV 544
S P NR + L+ T V V G KG G + DV+G++ RVEL+ K +
Sbjct: 702 ASLMPAPTANLNR------NRLINTLVVVTKGTSKGLIGVIKDVQGENARVELKHNNKTL 755
Query: 545 TVDRSMISDN---------------VVVSTPYRDTPRYGM------GSETPMHPSRTPLH 583
+V+ + + + Y P G G T MHPS
Sbjct: 756 SVNLASLKRKDQKTGATFPLEMAGIASAAGGYGARPNAGQYDINPYGGATAMHPSMGGQT 815
Query: 584 PYM----TPMRDAGATP------IHDGMRTPMRDRAWNPYTP----MSPPRDNWEDGNPG 629
P + TP G TP + +G +TP NPY +P N G
Sbjct: 816 PALMGGRTPAARFGQTPNPYAAGVQNG-KTP------NPYAAGVGGKTPSAANASGGKTP 868
Query: 630 SWGTS----PQY-------------QPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRD 672
+WG S P Y Q G P+ AY PG TP Y G P
Sbjct: 869 AWGASGGKTPAYGMASGGKTPAYGMQGGKTPN-AYAMAPPGPSGGRTPA--YGAYGRPEA 925
Query: 673 SSST-YVNAP------SPYLPSTPGGQ----PMTPNSASYLPGTPGGQPM-----TPGTG 716
S S V AP +PY TP G P P + P TP G P TPG
Sbjct: 926 SGSRPSVMAPPSAPYSAPYSAPTPAGNGAPTPAIPGNPYTAP-TPYGAPTPYAAPTPGMP 984
Query: 717 GLDAMSPVIGA 727
L A +P GA
Sbjct: 985 SLSAPTPGPGA 995
>sp|Q6CC84|SPT5_YARLI Transcription elongation factor SPT5 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=SPT5 PE=3 SV=1
Length = 980
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 233/755 (30%), Positives = 346/755 (45%), Gaps = 99/755 (13%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVL-AVESKA 69
L+I SV D YIY+EA + V A KGL N+Y Q ++LVPI+E D+L A +S
Sbjct: 210 LEIMSVFQRDTFTGYIYMEARNQQAVTVALKGLVNVYPQNMILVPIKEYVDLLRATKSAE 269
Query: 70 IDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANK-LEGREVAKKK 128
+L +VR+K G Y GDLA V ++ V +KL+PR+D A ++G+ K+
Sbjct: 270 TELVPGAYVRLKRGKYGGDLAIVENLSENGLEVRLKLVPRLDYGRNAEAGIDGKR--KRV 327
Query: 129 PFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNI 188
+PPPR + EA + R ++R P Y G + GFLYK + ++A+N+
Sbjct: 328 ARIPPPRLFSEQEASQYDPRNLQKRGPNAYVY----AGDEYIGGFLYKDFKITLVNAENV 383
Query: 189 QPTFDELEKFRTPGENGESDIASLS-TLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKV 247
P +EL +F + +G D+ASL+ +L + F GD V V +G+ ++G V
Sbjct: 384 APKLEELTRFNSEETDG-IDLASLAQSLRKSAAAVQFQGGDVVEVSEGEQTGVQGTVIST 442
Query: 248 DEENVHIRPEMKGL-PKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLII 306
+ V + L K + + S+ L K F G+HV+V+SG TG+++ +E + +
Sbjct: 443 HGDIVTVEATTAPLVGKRIDLPSRSLRKKFAIGDHVRVISGNFLDDTGLIVGLEDDSVTL 502
Query: 307 LSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLK 366
LSD K+++ VFA D+ + S++ G ++GDYEL D V LD G I++VE ++ +VL
Sbjct: 503 LSDLNKKEVTVFAKDLKKVSDI-GGSHQVGDYELHDFVQLDALHVGCIVKVERDSLKVLD 561
Query: 367 GVPDRPEVALVKLREIKCKLEKKSN--VQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424
V V I KL + D N + + + D VR G +G+QG V HIY
Sbjct: 562 ---QEGTVRSVTPSSITMKLTRNMEGLATDSNGSEIKIGDTVRETVG--EGRQGAVLHIY 616
Query: 425 RGILFIHDRHHLEHAGFICAKSS--SCVVVGGSR--ANGDRNGDAYSRFNSLRTPPRIPQ 480
+ LF+ R G AK+ + +V G+R +N G ++ N P
Sbjct: 617 KNTLFLSSR----SLGVFVAKAFKVNTIVAKGARTQSNSQATGPDLTKMN----PAVYNA 668
Query: 481 SPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGP-YKGYRGRVVDVKGQSVRVELES 539
PG+ + PP + +GG D L G V + G +KG +G V + RVEL +
Sbjct: 669 RPGQMA---PPVMPK----QGGFDRLKGKHVAIGPGSQHKGCKGIVKETTDDIARVELHA 721
Query: 540 QMKVVTVDRSMI---SDNVVVSTPYRD----------------------------TPRYG 568
KVV V + + D Y + TP +G
Sbjct: 722 PCKVVNVLKHQLRIYDDYKKTYLSYMEFATPRGMRSGGGRPGGPPGPGGPGSGGQTPSWG 781
Query: 569 MGSETPMHPS--RTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDG 626
G +TP + +TP TP GA G RTP A N +P +
Sbjct: 782 GGGKTPSWGAGGKTPSWGSKTPSW-GGAKTSSWGSRTP----AANAGGAQTPAWGAMGNK 836
Query: 627 NPGSWGTSPQYQP--GSPPSRAYEAP-----TPGSGWASTPGGNYSDAGTPRDSSS---- 675
P SWG S P G + A+ A TP G A TP S AGT SSS
Sbjct: 837 TP-SWGASESRTPAWGGAKTPAWGAAGAGSKTPAFGVARTPSWKSSSAGTYGGSSSRNKG 895
Query: 676 -----TYVNAPSP-YLPSTPG---GQPMTPNSASY 701
+ +AP+P Y +TPG G P TP +A +
Sbjct: 896 WEDLGSGNSAPTPGYAAATPGEMMGAP-TPGAAHH 929
>sp|Q2UGU3|SPT5_ASPOR Transcription elongation factor spt5 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=spt5 PE=3 SV=1
Length = 1026
Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 237/823 (28%), Positives = 386/823 (46%), Gaps = 130/823 (15%)
Query: 1 MQKCIDK---GSELQIRSVIALDH---LKNYIYIEADKEAHVKEACKGLRNIYSQ-KVML 53
+QK I++ GS ++ + A + + YIY+EA ++A V +A + + N+Y + K++L
Sbjct: 228 IQKRIEERPMGSRNPMKIISAFERGGAMSGYIYVEARRQADVMDALQDMSNVYPRTKMIL 287
Query: 54 VPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQ 113
VP+REM D+L V+ K+ +L WVR+K G Y+ DLA++ +V+ VTV+L+PR+D
Sbjct: 288 VPVREMPDLLRVQ-KSEELLPGGWVRIKRGKYQNDLAQIEEVETNGLAVTVRLVPRLDYG 346
Query: 114 ALANKLEGR---EVAKKKPFV------PPPRFMNVDEARELHIRVERRRDPMTGDYFENI 164
N+ G + +K+P + PP R + EA++ H + + G + +
Sbjct: 347 M--NEDIGAPFMDPKRKRPGMNPAVARPPQRLFSEAEAKKKHGKYLSATSGLGGKSWSYL 404
Query: 165 GGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES--DIASLS-TLFANRKK 221
G + DGFL K + ++ + +N+ P +E+ F E+G + D+ASL+ TL + +
Sbjct: 405 G-ETYVDGFLIKDMKVQHLITKNVSPRLEEVTMFARGSEDGTANLDLASLAETLKNSTAE 463
Query: 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLP-KTLAVNSKELCKYFEPGN 280
++ GD V V +G+ + L G + V ++ L + + K L K F G+
Sbjct: 464 DSYLPGDPVEVFRGEQQGLIGRTTSTRGDIVTLQVTEGDLAGQHIDAPVKSLRKRFREGD 523
Query: 281 HVKVVSGTQ-AGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGIT-KIGDY 338
HVKV+ G++ GMV++V+ + +LSD + ++I VF+ D+ S+E TG+ K+G +
Sbjct: 524 HVKVIGGSRYQDELGMVVQVKDDTVTLLSDMSMQEITVFSKDLRLSAE--TGVDGKLGMF 581
Query: 339 ELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNV--QDRN 396
++ DLV LD + I++V+ E+ +VL + + ++ K+ + + DRN
Sbjct: 582 DVHDLVQLDAATVACIVKVDRESLRVLD---QNGSIRTILPTQVTNKITPRRDAVATDRN 638
Query: 397 KNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSR 456
+ D VR V G + + G + HI+R LF+H++ E++G ++++ V V S
Sbjct: 639 GAEIRHGDTVREVYG--EQRNGVILHIHRSFLFLHNKAQAENSGITVVRTTNVVTV--SA 694
Query: 457 ANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLG 516
G G ++ N P SRGGP +G G D ++G TV VR G
Sbjct: 695 KGGRSTGPDLTKMN-----------PALMSRGGP-SGMMGPPKSFGRDRMIGKTVMVRKG 742
Query: 517 PYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSM--ISDNVVVST------------PYR 562
P+KG G V D RVEL S+ K+V++ + + + D V T P
Sbjct: 743 PFKGLVGIVKDAGDVQARVELHSKNKLVSIPKELLVVKDPVTGQTIEMGRGRGGPRVPSA 802
Query: 563 DTPRYGMGSETPM---HPSRTPLHPYMTPMRDAGATPIHDGM---RTPM----------- 605
P G TPM SRTP + R TP GM RTP
Sbjct: 803 APPSGWQGGRTPMAAADSSRTPAWGGASSAR----TPAWAGMGGSRTPAWKNDGSRTSNP 858
Query: 606 -------------RDRAWN-----PYTPMSPPRDNWEDGNPGS----WGT-----SPQY- 637
R AWN PY + +++ GS W +P +
Sbjct: 859 YDGSRTAYGGFGSRTPAWNAGARTPYGGSGSGQSDFDAFAAGSRTPAWNANSGSRTPAWS 918
Query: 638 ----QPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSST----YVNAPSP--YLPS 687
GS SR Y+APTPG +++ G Y+ A TP S+ T +AP+P +
Sbjct: 919 GATASNGSKDSRGYDAPTPGGAYSAPTPGAYASAPTPGVSAPTPGAWADSAPTPGAFNAP 978
Query: 688 TPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNE 730
TPGG P+ Y TP P DA +P +G D +
Sbjct: 979 TPGG----PSKKPYDAPTPAAWDSRP----YDAPTPAMGGDGD 1013
>sp|Q6BZG0|SPT5_DEBHA Transcription elongation factor SPT5 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SPT5 PE=3 SV=2
Length = 967
Score = 223 bits (567), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 207/740 (27%), Positives = 338/740 (45%), Gaps = 84/740 (11%)
Query: 2 QKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTD 61
++ + + + L+I +V D K YIYIEA K ++ A G+ NIY+++ +LVP+RE D
Sbjct: 269 KRTLARSNPLEILTVFQRDSFKGYIYIEAKKPEAIERALTGMVNIYAKQRLLVPVREYPD 328
Query: 62 VL-AVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALAN-KL 119
+L V+S +++ +VR+ G YK DLA V ++ V KL+PR+D +
Sbjct: 329 LLKQVKSSDVEIVPGIYVRITRGKYKNDLAIVDNLSENGLDVRCKLVPRLDYGKNDDFDK 388
Query: 120 EGREVAKKKPFVPPPRFMNVDEARELHIR-VERRRDPMTGDYFENIGGMLFKDGFLYKTV 178
+G+ + K P PR + EAR ++ R P Y G + +GFL+K
Sbjct: 389 DGKRIRSKTK--PIPRLFSEQEARMYDGEYLQSGRGPRAFIYR----GEEYNEGFLFKDF 442
Query: 179 SMKSISAQNIQPTFDELEKFRT--PGENGESDIASLSTLFANR-------KKGHFMKGDA 229
++ I +++ P +EL++F+T P E+G D+A+++ N+ + F GD
Sbjct: 443 KLQFIQTKDVHPKLEELDRFQTGDPEEDG-LDLAAIAASLKNKNNSEGAGRSSAFQPGDK 501
Query: 230 VIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPK----TLAVNSKELCKYFEPGNHVKVV 285
V + +G+ G V + I G PK L V + +L K F G+HV+V+
Sbjct: 502 VEIRRGEQAKTIGKVLSTSLNEITILVTDSGDPKFVNQRLTVPANDLRKLFSAGDHVRVI 561
Query: 286 SGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKI-GDYELRDLV 344
G + TG+V+K++ +I+LSD TK+D+RVFA+ ++++++ ++ G Y+L DLV
Sbjct: 562 EGKHSDETGLVIKIDNDSVILLSDQTKQDVRVFANYLIKATDASSNTDVTGGKYDLNDLV 621
Query: 345 LLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQ---DRNKNTVA 401
L+ ++ GVI++ E +F+VL + V I KLE Q DRN +TV
Sbjct: 622 QLNVSTVGVIVKAEKSSFEVL---TSEGRLMSVNPAGIASKLELSRREQIATDRNGSTVK 678
Query: 402 VKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAG-FICAKSSSCVVVGGSRANGD 460
+ D V+ V G K ++G + HIY+ LFI LE+ G F+ + +
Sbjct: 679 IGDTVKEVLGDKK-REGAILHIYKNSLFIKSNEILENLGVFVTNCMNVSTITTKDSIVSK 737
Query: 461 RNGDAYSRFN-SLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYK 519
G +R N +L+ P I AG + R GG D L+ V V G YK
Sbjct: 738 SLGPDLNRMNPNLKLPNPIAN-----------AGLKTR--VGGRDKLIYKDVLVNSGNYK 784
Query: 520 GYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVV--------------STPYRDTP 565
G G+V + R+EL ++ K + V ++ +S V+V S P P
Sbjct: 785 GLMGKVTEADEVYARIELHTKSKKIKVTKNSLS--VLVRGEAIPYLRFIGASSGPGNSNP 842
Query: 566 RYGMGSETPMHPSRTPLH--PYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNW 623
G + P++TP + GATP G T AW
Sbjct: 843 SGNFGGASFNQPAKTPAFSSGGKSSWGSGGATPSVGGGAT-----AWGS----------- 886
Query: 624 EDGNPGSW--GTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAP 681
G SW G +P Y G+ + A S W + G + ++ S+
Sbjct: 887 -GGAQSSWGGGKTPAYNSGNASTWGGNAG-GASAWGNNNGNASTWGSNSKNGGSSTWGGN 944
Query: 682 SPYLPSTPGGQPMTPNSASY 701
S + S GG+ N +++
Sbjct: 945 STWGNSNKGGKSSWGNGSAW 964
>sp|Q5BCN2|SPT5_EMENI Transcription elongation factor spt5 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=spt5 PE=3 SV=1
Length = 1016
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 227/777 (29%), Positives = 358/777 (46%), Gaps = 123/777 (15%)
Query: 1 MQKCIDK---GSELQIRSVIALDH---LKNYIYIEADKEAHVKEACKGLRNIYSQ-KVML 53
+QK I+ GS I+ + A + + YIY+EA ++A V +A + + N+Y + K++L
Sbjct: 219 IQKRIEDRPPGSRNPIKIISAFERGGAMSGYIYVEARRQADVMDALQDMSNVYPRTKMIL 278
Query: 54 VPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQ 113
VP++EM D+L V+ K+ +L+ WVR+K G Y DLA++ +V+ VTV+L+PR+D
Sbjct: 279 VPVKEMPDLLRVQ-KSEELNPGGWVRIKRGKYMNDLAQIEEVETNGLAVTVRLVPRLDYG 337
Query: 114 ALANKLEGREV---AKKKPFV------PPPRFMNVDEARELHIRVERRRDPMTGDYFENI 164
N+ G + +K+P PP R + EA++ H + + + N
Sbjct: 338 M--NEDSGAPIMDPKRKRPGANPAVARPPQRLFSEAEAKKKHSKYLTATAGLGAKSW-NY 394
Query: 165 GGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGES--DIASLS-TLFANRKK 221
G + DGFL K + ++ + +N+ P +E+ F ENG S D+ASL+ TL + +
Sbjct: 395 LGETYIDGFLIKDMKVQHLITKNVNPRLEEVTMFARDSENGTSNLDLASLAETLKNSTAE 454
Query: 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHI---RPEMKGLPKTLAVNSKELCKYFEP 278
++ GD V V KG+ + L G + V I E+ G +T+ K L K F
Sbjct: 455 ESYLPGDPVEVFKGEQQGLVGRTSSTRGDIVTILVTEGELAG--QTIEAPVKTLRKRFRE 512
Query: 279 GNHVKVVSGTQ-AGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGIT-KIG 336
G+HVKV+ G++ GMV++V + +LSD + ++I VF+ D+ S+E TG+ K+G
Sbjct: 513 GDHVKVIGGSRYQDELGMVVQVRDDTVTLLSDMSMQEITVFSKDLRLSAE--TGVDGKLG 570
Query: 337 DYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNV--QD 394
+++ DLV LD + I++V+ E+ +VL + + ++ K+ + + D
Sbjct: 571 MFDVHDLVQLDAATVACIVKVDRESLRVLD---QNGSIRTILPSQVTNKITPRRDAVATD 627
Query: 395 RNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGG 454
RN + D VR V G + + G + HI+R LFIH++ E+AG + ++++ V V
Sbjct: 628 RNGAEIRHGDTVREVYG--EQRSGVILHIHRSFLFIHNKAQAENAGIVVVRTTNVVTV-- 683
Query: 455 SRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAG--GRNRGGRGGHDALVGTTVK 512
S G G S+ N R G P G G D L+G TV
Sbjct: 684 SAKGGRPTGPDLSKMNPA------------LMRNGAPGGMMAPPPSKTFGRDRLLGKTVL 731
Query: 513 VRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPY----------R 562
V+ GP+KG G V D RVEL S+ K+VT+ + ++ VV P R
Sbjct: 732 VKKGPFKGLLGIVKDTTDVQARVELHSKNKLVTIPKELL----VVKDPVTGQTIDIGRGR 787
Query: 563 DTPRY----------GMGSETPM---HPSRTPLHPYMTPMRDAGATPIHDGMRTPM---- 605
PR G TPM SRTP R + G RTP
Sbjct: 788 GGPRVPQNSAAPSSGWQGGRTPMAAADSSRTPAWGAAMSSRTPAWSGAGLGSRTPAWKAD 847
Query: 606 -----------RDRAWN-----PYTPMSPPRDNWEDGN---PGS----WGT-----SPQY 637
R AWN PY D + GS WG +P +
Sbjct: 848 GSRTAYGGAGSRTPAWNAGARTPYGGGFGSGSGNSDFDAFAAGSRTPAWGAASGSRTPAW 907
Query: 638 QPGSPPS-----RAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTP 689
+ + +AY+APTPG+ +++ G Y A TP S+ T P + S P
Sbjct: 908 SASANTTSRNDNKAYDAPTPGATYSAPTPGAYGGAPTPGLSAPT----PGAWADSAP 960
>sp|Q7S3C4|SPT5_NEUCR Transcription elongation factor spt-5 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=spt-5 PE=3 SV=2
Length = 1052
Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 238/798 (29%), Positives = 358/798 (44%), Gaps = 137/798 (17%)
Query: 22 LKNYIYIEADKEAHVKEACKGLRNIYSQKVM-LVPIREMTDVLAVESKAIDLSRDTWVRM 80
+K YIY+EA ++ + A G+ N+Y + M LV I++M D+L V K +L WVR+
Sbjct: 285 MKGYIYVEAQRQNDILVALDGILNVYPRSNMHLVEIKDMPDLLRV-IKTPNLEPGAWVRL 343
Query: 81 KI-GNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALAN---KLEG-REVAKKKPFVPPPR 135
K + GDLA+V+DV V+ IPR+D + + +G R+ PP R
Sbjct: 344 KKPAKHAGDLAQVIDVTENGLEARVRFIPRLDYGVRDDPVFQADGKRKRPGVPGPRPPQR 403
Query: 136 FMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDEL 195
+ EAR+ H R + +P T + N G F++GF K + ++ + +N+ PT +E+
Sbjct: 404 LFSEAEARKRHPRY-LQGNPQTNSW--NYNGDDFENGFQVKDIKIQQLEVKNVNPTLEEV 460
Query: 196 EKFRTPGENGESDI---ASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENV 252
KF + E+G ++ A +TL + K ++ GD + V +G+ + + G V + V
Sbjct: 461 TKFASGAEDGTENLDLKALAATLKDSAKSVAYVPGDIIEVYEGEQQGVIGKATNVQGDIV 520
Query: 253 HIRPEMKGLP-KTLAVNSKELCKYFEPGNHVKVVSGTQ-AGATGMVLKVEQHVLIILSDT 310
++ L +T+ V +K L K F G+HVKV+ G++ GMV+K+ + +L+D
Sbjct: 521 TLQVTEGDLAGRTIDVPNKGLRKRFRIGDHVKVIGGSRFRDEVGMVVKIVDDRVTLLTDQ 580
Query: 311 TKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPD 370
T +I VF+ D+ E+S++ G +G Y L DLV LD + G I++V+ E+ VL D
Sbjct: 581 TNTEITVFSKDLREASDIG-GQGSLGQYSLLDLVQLDATTVGCIVKVDRESVVVLDQNGD 639
Query: 371 RPEVALVKLREIKCKLEKK--SNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGIL 428
+V + +I KL K+ + DRN + + + DVVR G + +QG + HI+R +
Sbjct: 640 TKQV---QPSQITNKLPKRKFAVAADRNGSEIRLDDVVREYGG--QQRQGKIIHIHRSYI 694
Query: 429 FIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRN----GDAYSRFNSLRTPPRIPQSPGR 484
F+H E+AG +++S V A G RN G S N P + ++P
Sbjct: 695 FLHTTTTNENAGVFVTRANSVTTVA---AKGGRNTATAGPDLSAMN-----PALKRNPTA 746
Query: 485 YSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVV 544
+ P G D + TV +R G YKG G V D RVEL S+ K++
Sbjct: 747 SGKQMPAPR------TFGPDRAINQTVVIRRGGYKGLLGIVKDTTDTHARVELHSRGKII 800
Query: 545 TVDRSMIS--DNVV---------------------------VSTPYRD-----TPRYGMG 570
T+ ++ +S D V TP TP +G
Sbjct: 801 TIPKADLSFKDKVTGKTIDINQRGGSRGGFGGGGRGGGEFGSRTPMASGGSDRTPAWGSS 860
Query: 571 -SETPMHP-----SRTP--------LHPY---MTPMRDAGA-------TPI-HDGMRTPM 605
S TP SRTP ++PY TP A A TP H G RTP
Sbjct: 861 RSRTPAWNRDAGGSRTPAWNDGSRTVNPYDGSRTPYGGATAYGGIGSRTPAWHSGSRTPA 920
Query: 606 RDR-AWNPYTP-MSPPRDNWEDGNPG-------------SWGTSPQYQPGSPPSRAYEAP 650
D TP S D+W PG +WG +P G S AY+AP
Sbjct: 921 PDSFGHGSKTPAWSAGSDSWGSKTPGYGASAPTPGASGDAWGYTPGASGGGNSSSAYDAP 980
Query: 651 TPGSGW-ASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQ 709
TPG G A TPG +NAP+P G P A+ TPG
Sbjct: 981 TPGGGLSAPTPG--------------AALNAPTP-------GAYSAPTPAAVSAPTPGAW 1019
Query: 710 PMTPGTGGLDAMSPVIGA 727
G+GG +P GA
Sbjct: 1020 QGGWGSGGDAVSAPTPGA 1037
>sp|Q5ALX3|SPT5_CANAL Transcription elongation factor SPT5 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPT5 PE=3 SV=1
Length = 956
Score = 199 bits (506), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 168/572 (29%), Positives = 286/572 (50%), Gaps = 48/572 (8%)
Query: 7 KGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVL-AV 65
+G+ L I +V D YIYIEA + + +A G+ N++ + +LVP++E D+L V
Sbjct: 241 QGNPLDILTVFQRDAFTGYIYIEAKRPDAIDKALVGMVNVFVRDKLLVPVKEYPDLLKQV 300
Query: 66 ESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDL-QALANKLEGREV 124
+S +++ +VR+K G Y+GDLA V ++ V +++PR+D Q +G+ +
Sbjct: 301 KSSDVEIRPGIYVRIKRGIYRGDLAIVDNLSENGLDVRCQVVPRLDYGQNDEIGPDGKVI 360
Query: 125 AKKKPFVPPPRFMNVDEARELH-IRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSI 183
K P P + +AR +++ R P + Y G + DG+LYK ++ I
Sbjct: 361 --KSKIKPLPALFSEQKARMYDPYKLQMGRVPNSFIY----RGNEYYDGYLYKDFKLQFI 414
Query: 184 SAQNIQPTFDELEKFRTPG-ENGESDIASLSTLFAN-----RKKGHFMKGDAVIVIKGDL 237
+++ PT +EL++F+ E+G + A +TL N + F GD V + +G+
Sbjct: 415 QTKDVNPTLEELDRFQNQNDEDGLNLQAIAATLKGNNAGEGKSSTAFQPGDKVEIRRGEQ 474
Query: 238 KNLKGWVEKVDEENVHIRPEMKGLPK----TLAVNSKELCKYFEPGNHVKVVSGTQAGAT 293
G V + + I+ G P+ L V + +L K F G+HV++V G T
Sbjct: 475 AKTIGIVVETALNEITIKVTDSGDPRFVDQRLTVPANDLRKIFYEGDHVRIVEGKHFDET 534
Query: 294 GMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGD-YELRDLVLLDNNSFG 352
G+V+K++ ++I+SD TKED+RVFA+ +V++++ ++ + Y+++DLV L + G
Sbjct: 535 GLVIKIDGDSVVIVSDQTKEDVRVFANYLVKATDASSNFDLLNSKYDIKDLVELSGLTVG 594
Query: 353 VIIRVESEAFQVLKGVPDRPEVALVKLRE--IKCKLEKKSNVQ---DRNKNTVAVKDVVR 407
VII+ E F VL + L+ +R+ I KL++ Q DRN T+ V D V+
Sbjct: 595 VIIKAEKNIFDVLT-----TDGRLISVRQSGIASKLKQSRREQVATDRNGTTIRVGDTVK 649
Query: 408 IVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAK--SSSCVVVGGSRANGDRNGDA 465
+ G K ++G + HIY+ LFI +E+ G A + + V S + D
Sbjct: 650 ELLGE-KSREGAILHIYKNALFIKSNEIVENLGIFVANRMNVTTVATKDSTVSKSLGPDL 708
Query: 466 YSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRV 525
S +LR P + AG + R GG D L+ V V G YKG +G+V
Sbjct: 709 TSMNPNLRLPNPV-----------AVAGLKTR--VGGRDKLLYKDVAVTSGSYKGLKGKV 755
Query: 526 VDVKGQSVRVELESQMKVVTVDRSMISDNVVV 557
+ R+EL ++ K + V ++ + NV+V
Sbjct: 756 TEADDLYARIELHTKSKKIKVLKNNL--NVIV 785
>sp|Q4I5I4|SPT5_GIBZE Transcription elongation factor SPT5 OS=Gibberella zeae (strain
PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT5
PE=3 SV=1
Length = 1042
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 205/754 (27%), Positives = 339/754 (44%), Gaps = 92/754 (12%)
Query: 22 LKNYIYIEADKEAHVKEACKGLRNIYSQ-KVMLVPIREMTDVLAVESKAIDLSRDTWVRM 80
+K ++Y+EA ++ + + + N+Y K++LV I++M ++ + SK L WVR+
Sbjct: 262 MKGFVYVEARRQTDILKGLDSMMNVYPHSKMILVDIKDMPELFRI-SKTPTLEPGAWVRL 320
Query: 81 KIG-NYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPF----VPPPR 135
+ + GDLA+V+DV V+ IPR+D + L + +K+PF PP R
Sbjct: 321 RRPPKHNGDLAQVIDVTENGLEARVRFIPRLDYGMRDDALSA-DGKRKRPFGNGPKPPQR 379
Query: 136 FMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDEL 195
+ EAR+ + R + +P TG + N F++GF + V ++ ++ ++ P+ +E+
Sbjct: 380 LFSEIEARKRNPRA-IQGNPSTGTWTYN--NEEFENGFQVRDVKIQQLTVTDVNPSLEEV 436
Query: 196 EKFRTPGENGESDI---ASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENV 252
+F + E+G ++ A +L + ++ GD V V G+ K + G +V + V
Sbjct: 437 TRFASGAEDGTENLDLKALAHSLKDSNALATYLPGDVVEVYTGEQKGVVGKAMRVHSDVV 496
Query: 253 HIR-PEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQ-AGATGMVLKVEQHVLIILSDT 310
I E + + + + V + L K F G+HVKV+ G++ GMV+ + + IL+D
Sbjct: 497 SITVTEGELVGQEIDVPIRALRKRFNVGDHVKVIGGSKFRDEVGMVVNIRDDKVTILTDQ 556
Query: 311 TKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLK--GV 368
T +I VF+ D+ E+S++ G +G Y L DLV LD + G +++V+ E+ L G
Sbjct: 557 TNTEITVFSKDLREASDIG-GQGSLGQYSLHDLVQLDPTTVGCVVKVDRESLVALDQFGT 615
Query: 369 PDRPEVALVKLREIKCKLEKKSNVQ--DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRG 426
P + V +I K+ K+ DR+ + + ++DVV+ G + +QG + HI+R
Sbjct: 616 PRQ-----VMPSQISNKIPKRKTAVAVDRHGSEIRLEDVVKEYTG--QQRQGKIIHIHRS 668
Query: 427 ILFIHDRHHLEHAGFICAKSS--SCVVVGGSRAN-GDRNGDAYSRFNSLRTPPRIPQSPG 483
+F+H + EHAG K++ + V G R N G + N P G
Sbjct: 669 YIFLHSNDNKEHAGVFVTKANMVNTVAAKGGRVNTAAATGPDLTAMN----PALKLHKNG 724
Query: 484 RYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKV 543
++ PP G D + TV ++ G YKG G V D RVEL ++ K
Sbjct: 725 SENKPVPPPRSF------GKDKAIEQTVVIKKGAYKGLLGIVKDTTDTHARVELHTKSKT 778
Query: 544 VTVDRSMISDNVVVSTPYRD----------------------TPRYGMGSETPM---HPS 578
+TV + ++ ++ D P + GS TPM +
Sbjct: 779 ITVPKDCLAFKNRMTGATIDIASRGGRGGYGGGAGRGGGGDRVPGWQSGSRTPMAGGNSD 838
Query: 579 RTPLHPYMTPMRDAGATPIH-----DGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGT 633
R P TP +G TP G RTP AW + P D GS G
Sbjct: 839 RVPAWGSRTPAA-SGRTPAWKAQDMSGARTP----AWADGSRTVNPYDGSRTAY-GSGGR 892
Query: 634 SPQYQPGSPPSRAYEAPTPGSGWAS---TPGGNYSDAGTPRDSSSTY-VNAPSPYLPSTP 689
+P +Q G P PG + + TP D+ + + V AP+ P
Sbjct: 893 TPAWQAGG------RTPAPGDAFGAGSRTPAYGGGDSWGSGSKTPAWGVTAPT---PGAS 943
Query: 690 GGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSP 723
GG P SY TPGG P G ++A +P
Sbjct: 944 GGDAWGP--GSYDAPTPGGALGAPTPGAMNAPTP 975
>sp|P27692|SPT5_YEAST Transcription elongation factor SPT5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPT5 PE=1 SV=1
Length = 1063
Score = 192 bits (489), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 161/563 (28%), Positives = 275/563 (48%), Gaps = 55/563 (9%)
Query: 10 ELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLA-VESK 68
+L+I S+ D+ IYIEA K++ +++ C G+ +IY + +L+P++E+ +L +S
Sbjct: 319 KLKILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLLLKPNKSD 378
Query: 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQAL--ANKLEGREVAK 126
+ L ++VR+K G YKGDLA V + V +K++PR+D + + ++
Sbjct: 379 DVALEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKFDEIDPTTQQRKSR 438
Query: 127 KKPFV--PPPRFMN------VDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTV 178
+ F PP+ N +D+A L+ R +R DY DG+LYK+
Sbjct: 439 RPTFAHRAPPQLFNPTMALRLDQA-NLYKRDDRHFTYKNEDYI---------DGYLYKSF 488
Query: 179 SMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLF--ANRKKGHFMKGDAVIVIKGD 236
++ + +NIQPT +EL +F + + G D+ S+S A K F GD + V+ G+
Sbjct: 489 RIQHVETKNIQPTVEELARFGS--KEGAVDLTSVSQSIKKAQAAKVTFQPGDRIEVLNGE 546
Query: 237 LKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMV 296
+ KG V + ++ I+ + G L L K FEPG+HV V++G G G+V
Sbjct: 547 QRGSKGIVTRTTKDIATIK--LNGFTTPLEFPISTLRKIFEPGDHVTVINGEHQGDAGLV 604
Query: 297 LKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIR 356
L VEQ + +S T ++ + A+++ +S + T + +Y L D+V L + II+
Sbjct: 605 LMVEQGQVTFMSTQTSREVTITANNLSKSIDTTATSS---EYALHDIVELSAKNVACIIQ 661
Query: 357 VESEAFQVLKGVPDRPEVALVK----LREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGP 412
+ F+V + + +V+ + L +I + S+V D N N + + D IVE
Sbjct: 662 AGHDIFKV---IDETGKVSTITKGSILSKINTARARVSSV-DANGNEIKIGDT--IVEKV 715
Query: 413 CKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSL 472
++G V +I +F+ + +E+AG S+ V S+ N N S+ N
Sbjct: 716 GSRREGQVLYIQTQQIFVVSKKIVENAGVFVVNPSNVEAV-ASKDNMLSNKMDLSKMN-- 772
Query: 473 RTPPRIPQSPGRYSRGGPPAGGRNR---GGRGGHDALVGTTVKVRLGPYKGYRGRVVDVK 529
P S+ GPP+ + RGG + +G TV++R YKG G V DV
Sbjct: 773 ---------PEIISKMGPPSSKTFQQPIQSRGGREVALGKTVRIRSAGYKGQLGIVKDVN 823
Query: 530 GQSVRVELESQMKVVTVDRSMIS 552
G VEL S+ K +T+D+ ++
Sbjct: 824 GDKATVELHSKNKHITIDKHKLT 846
>sp|Q759T6|SPT5_ASHGO Transcription elongation factor SPT5 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SPT5 PE=3 SV=2
Length = 958
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 158/561 (28%), Positives = 267/561 (47%), Gaps = 54/561 (9%)
Query: 10 ELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLA-VESK 68
+L+I S+ D IYIEA K++ +++ C G+ +IY + +L+P++E+ +L +S
Sbjct: 223 KLKILSIFQRDSFSGRIYIEAPKQSVIEKFCNGVPDIYVNQKLLIPVQELPLLLKPSKSD 282
Query: 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDL--QALANKLEGREVAK 126
+ L ++VR+K G YKGDLA V + + +K++PR+D + ++ AK
Sbjct: 283 DVRLEPGSYVRIKRGIYKGDLAVVEQLSDNNLECMLKVVPRLDYGKNDEVDPDTQQKKAK 342
Query: 127 KKPFV--PPPRFMN------VDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTV 178
K F PPP+ N +D+A L+ R E+ DY DG+L K
Sbjct: 343 KVSFAQRPPPQLFNPTMALRMDQA-NLYKRDEKHFTYRNEDYI---------DGYLIKVF 392
Query: 179 SMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLF--ANRKKGHFMKGDAVIVIKGD 236
++ + NI PT +EL +F + ++G D+ ++S A K F GD V ++ G+
Sbjct: 393 KIQYLKTANIHPTVEELARFGS--KDGAVDLTTISQTIKKAQASKAMFQPGDRVEILNGE 450
Query: 237 LKNLKGWVEKVDEENVHIRPEMKGL-PKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGM 295
+ KG+V + + + + + G K L L K FEPG+HV V+SG G G+
Sbjct: 451 QRGSKGYVTRTSTDIISV--SLTGFNAKPLGFPVSSLRKIFEPGDHVSVMSGDHQGDAGL 508
Query: 296 VLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVII 355
VL V+ + +SD T+E++ + A+++ +S + T + DY L D+V L + +I
Sbjct: 509 VLIVKNGQVTFVSDQTRENLTISANNLTKSMDSTPTSS---DYALHDIVELSAKNVACVI 565
Query: 356 RVESEAFQVLKGVPDRPEVALVK----LREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEG 411
+ + F+VL D +V+ V L++I + + V D N + + D V VE
Sbjct: 566 QAGHDIFKVLD---DSGKVSTVTKGSILKKINTTRSRIAAV-DGNGKEIKIGDTV--VEK 619
Query: 412 PCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNS 471
++G V ++ +FI + +E+AG + V R S+ +
Sbjct: 620 VGARREGQVLYVQSHQIFIVSKKIVENAGVFVVNPMNVEAV------ASRENLIASKLDL 673
Query: 472 LRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQ 531
+ P I G S+ P G D + TV++R YKG G V DV G
Sbjct: 674 TKMNPEIAAKMGPPSQTAQPVS-------VGRDVALNKTVRIRSAGYKGQLGIVKDVNGD 726
Query: 532 SVRVELESQMKVVTVDRSMIS 552
VEL S+ K +TVD+ ++
Sbjct: 727 MATVELHSKNKHITVDKRKLT 747
>sp|Q6FRZ5|SPT5_CANGA Transcription elongation factor SPT5 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPT5 PE=3 SV=1
Length = 1010
Score = 182 bits (463), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 155/562 (27%), Positives = 272/562 (48%), Gaps = 53/562 (9%)
Query: 10 ELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLA-VESK 68
+L+I S+ D+ IYIEA K++ +++ C G+ +IY + +L+P++E+ +L +S
Sbjct: 271 KLKILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLLLKPSKSD 330
Query: 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQAL--ANKLEGREVAK 126
+ L ++VR+K G YKGDLA V + V +K++PR+D + + + ++
Sbjct: 331 DVALEEGSYVRVKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKFDEIDPVTQQRKSR 390
Query: 127 KKPFV--PPPRFMN------VDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTV 178
+ F P P+ N +D+A L+ R +R DY DG+LYK+
Sbjct: 391 RPTFAHRPAPQLFNPTMALRLDQA-NLYKRDDRHFTYKNEDYI---------DGYLYKSF 440
Query: 179 SMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLF--ANRKKGHFMKGDAVIVIKGD 236
++ + +NIQPT +EL +F + + G D+ ++S A K F GD V ++ G+
Sbjct: 441 RIQHVETKNIQPTVEELARFGS--KEGAVDLTAISQSIKKAQAAKVSFQPGDRVEILNGE 498
Query: 237 LKNLKGWVEKVDEENVHIR-PEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGM 295
+ +G V K + PE P V++ L K FEPG+HV V++G G G+
Sbjct: 499 QRGSRGIVAKSTTTIATVNLPEFPLKPLEFPVSA--LRKIFEPGDHVMVINGEHQGDAGL 556
Query: 296 VLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVII 355
VL ++Q + +S+ T+E++ + A+++ +S + T + +Y L D+V L + II
Sbjct: 557 VLTIKQGQVTFMSNQTREEVTITANNLSKSIDSTPTSS---EYSLHDIVELSAKNVACII 613
Query: 356 RVESEAFQVLKGVPDRPEVALVKLREIKCKLE---KKSNVQDRNKNTVAVKDVVRIVEGP 412
+ + F+V + + +V+ + I K+ + D + N + + D IVE
Sbjct: 614 QAGHDIFKV---IDETGKVSTITKGSILSKINTSRSRLTTVDSSGNEIKIGD--SIVEKI 668
Query: 413 CKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSL 472
++G V +I +F+ + +E+AG + + S+ N N S+ N
Sbjct: 669 GARREGQVLYIQSQQIFVVSKKIVENAGVFVVNPVNVEAI-ASKDNMLNNKLDLSKMN-- 725
Query: 473 RTPPRIPQSPGRYSRGGPPAGGRNRGG--RGGHDALVGTTVKVRLGPYKGYRGRVVDVKG 530
P S+ GPP R G + +G TV+VR YKG G V DV G
Sbjct: 726 ---------PDIISKMGPPKSSMPSAAPVRTGREVALGKTVRVRSAGYKGQLGIVKDVNG 776
Query: 531 QSVRVELESQMKVVTVDRSMIS 552
VEL S+ K +T+D+ ++
Sbjct: 777 DKATVELHSKNKHITIDKRKLT 798
>sp|Q6CWW9|SPT5_KLULA Transcription elongation factor SPT5 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SPT5 PE=3 SV=1
Length = 1036
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 194/753 (25%), Positives = 331/753 (43%), Gaps = 80/753 (10%)
Query: 10 ELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLA-VESK 68
+L+I S+ D+ IYIEA K++ +++ G+ ++YS + +L+P++E+ +L +S
Sbjct: 277 KLKILSIFQRDNYTGRIYIEAPKQSVIEKFVNGVPDVYSNQKLLIPVQELPLLLKPTKSD 336
Query: 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLE---GREVA 125
+ L ++VR+K G YK DLA + + +K++PR+D ++++ + A
Sbjct: 337 EVRLDVGSYVRIKRGIYKNDLAVIDQISQNNLEALLKIVPRLDY-GKNDEIDPDTNQRKA 395
Query: 126 KKKPFV--PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSI 183
K+ F PPP+ N A L +RD Y + + DG+L+K+ ++ +
Sbjct: 396 KRATFASRPPPQLFNPTMALRLDQANLFKRDDRHFTYRKED----YVDGYLFKSFKIQYL 451
Query: 184 SAQNIQPTFDELEKFRTPGENGESDIASLSTLF--ANRKKGHFMKGDAVIVIKGDLKNLK 241
+NIQPT +EL +F + + G+ D+A+++ A K F GD V V+ G+ + +
Sbjct: 452 DTKNIQPTVEELSRFGS--KEGDVDLAAIAQTMKKAQASKAMFQPGDRVEVLTGEQRGSR 509
Query: 242 GWVEKVDEENVHIRPEMKGLP-KTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVE 300
G V + ++ + ++ + G K+L L K FE G+HV V++G G G+VL V+
Sbjct: 510 GVVTRSSKDVISVK--LSGFSDKSLEFPIASLRKIFELGDHVTVIAGEHEGNAGLVLLVQ 567
Query: 301 QHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESE 360
+ +SD T+E++ + A+++ +S + T + +Y L D+V L + +I+ +
Sbjct: 568 NGQVTFVSDQTRENLTISANNLSKSMDSTPTSS---EYALHDIVELSAKNVACVIQAGHD 624
Query: 361 AFQVLKGVPDRPEVALVKLREIKCKLE---KKSNVQDRNKNTVAVKDVVRIVEGPCKGKQ 417
F++ + D +VA V I K+ K D N + + DVVR E ++
Sbjct: 625 IFKI---IDDSGKVATVTKGSILAKINVARAKVAAVDGNGREIKIGDVVR--EKIGSRRE 679
Query: 418 GPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPR 477
G V ++ +FI + E+AG + V S+ N + S+ N
Sbjct: 680 GQVLYVQNQHIFIRSKTITENAGVFVVNPMNVEAV-ASKENLMSSALDLSKIN------- 731
Query: 478 IPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVEL 537
P S+ GPP + + G D + TV++R YKG G V DV G +EL
Sbjct: 732 ----PNIASKMGPPQTTQ-QTRLVGRDVALNKTVRIRSAGYKGQLGIVKDVNGDKATIEL 786
Query: 538 ESQMKVVTVDR---SMISDNVVVSTPYRD-TPRYGMGSETPMHPS--RTPLHPYMTPMRD 591
S+ K +T+D+ + S Y + R G T + PS P H M
Sbjct: 787 HSKNKHITIDKRKLTYFSHEGGEGITYDELVSRRGRTPHTRLGPSYVSAPRH-----MAA 841
Query: 592 AGATPIHD-----GMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQY--------- 637
GA + G TP WN + P ++G SWG + +
Sbjct: 842 GGAVATNTPQQLPGGMTP----GWNAFDGGKTPAVG-QNGGTSSWGGASTWGGQGPGGAS 896
Query: 638 ----QPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQP 693
G+ + + T G AST G S G ++S A S + GG
Sbjct: 897 AWGGAAGNTSTWGGQGATSTWGGASTWGNKSSYGGASSWAASGESGAASAW----GGGNK 952
Query: 694 MTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIG 726
+ S G GG G+G S G
Sbjct: 953 SSYGGTSTWGGNQGGVSAWGGSGNKSQRSKNTG 985
>sp|Q9Y9W3|NUSG_AERPE Putative transcription antitermination protein NusG OS=Aeropyrum
pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) GN=APE_2176.1 PE=3 SV=2
Length = 151
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%)
Query: 11 LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAI 70
L IRS+I +K Y+ +EA V +A +GLR++ ++ +++ E+ ++ E +
Sbjct: 35 LDIRSIIVPPRIKGYVILEAHDPGDVYDATRGLRHVKRRRPLILKFEEVMKLVKPEVEIP 94
Query: 71 DLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLI 107
L V + G +KG A+V+DV+ + +VTV L+
Sbjct: 95 ALKPGQVVEIVAGAFKGMKARVIDVNQSKGQVTVSLL 131
>sp|Q57818|NUSG_METJA Putative transcription antitermination protein NusG
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0372
PE=1 SV=1
Length = 147
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 54/98 (55%)
Query: 9 SELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESK 68
+L + S++A + LK Y+ +EA+ + V+E KG+ + + I E+ +L +
Sbjct: 26 EQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRVRGIVPGTIAIEEIEPLLTPKKI 85
Query: 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKL 106
++ + V + G +KG+ AKV+ VD ++ VT++L
Sbjct: 86 IENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLEL 123
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A
PE=1 SV=2
Length = 1970
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 613 YTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRD 672
YTP SP + +P TSP+Y P SP Y TP S S TP
Sbjct: 1853 YTPTSP---KYSPTSPKYSPTSPKYSPTSP---TYSPTTPKYSPTSPTYSPTSPVYTPTS 1906
Query: 673 -----SSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGA 727
+S TY Y P++P P +P ++Y P +PG P +P SP I
Sbjct: 1907 PKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSP---TYSLTSPAISP 1963
Query: 728 DN 729
D+
Sbjct: 1964 DD 1965
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a
PE=1 SV=3
Length = 1970
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 613 YTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRD 672
YTP SP + +P TSP+Y P SP Y TP S S TP
Sbjct: 1853 YTPASP---KYSPTSPKYSPTSPKYSPTSP---TYSPTTPKYSPTSPTYSPTSPVYTPTS 1906
Query: 673 -----SSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGA 727
+S TY Y P++P P +P ++Y P +PG P +P SP I
Sbjct: 1907 PKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSP---TYSLTSPAISP 1963
Query: 728 DN 729
D+
Sbjct: 1964 DD 1965
>sp|Q8R0T2|ZN768_MOUSE Zinc finger protein 768 OS=Mus musculus GN=Znf768 PE=2 SV=1
Length = 568
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 16/127 (12%)
Query: 616 MSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSS 675
+ P +E +P SP+++P SP +E+ +PG P ++ D S
Sbjct: 61 LEPQSPEFEPQSPEFESQSPRFEPESP---GFESRSPG---FVPPSPEFAPRSPESDPQS 114
Query: 676 TYVNAPSP-YLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGG----LDAMSPVIGADNE 730
+ SP Y P +PG P +P PG+P +P +PG G ++ SP G +++
Sbjct: 115 PEFESQSPKYEPRSPGCHPRSPGCE---PGSPRYEPKSPGYGSKSPEFESQSP--GYESQ 169
Query: 731 GPWFMPD 737
P + P
Sbjct: 170 SPGYEPQ 176
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 30/147 (20%)
Query: 573 TPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWN--PYTPMSPPRDNWEDGNPGS 630
+P P+ +P P +P +P ++G + + Y+P SP ++ +P
Sbjct: 1694 SPTSPTYSPTSPTYSP-----TSPSYEGYSPSSPKYSPSSPTYSPTSP---SYSPTSPQY 1745
Query: 631 WGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSP-YLPSTP 689
TSPQY P SP TP + +PR SS + SP Y P++P
Sbjct: 1746 SPTSPQYSPSSP--------------TYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSP 1791
Query: 690 GGQP----MTPNSASYLPGTPGGQPMT 712
P +P S +Y P +P QP T
Sbjct: 1792 SYTPSSPQYSPTSPTYTP-SPADQPGT 1817
>sp|Q9JIK1|CDHR5_RAT Cadherin-related family member 5 OS=Rattus norvegicus GN=Cdhr5 PE=1
SV=1
Length = 862
Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 63/174 (36%), Gaps = 26/174 (14%)
Query: 570 GSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPG 629
GS P P+ T L P + G +P G+ T +P T +P D + PG
Sbjct: 501 GSAGPFPPAGTTLSPLTSAPTVPGGSPTL-GIST-------SPQT-ATPGGDATQTPKPG 551
Query: 630 SW-------GTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPS 682
+ G S QP +P + + P PG+ P S + P S + P
Sbjct: 552 TSQPMVPTPGASTSSQPATPSGSSTQTPKPGTSQPMVPTPGASTSSQPATPSGSSTQTPR 611
Query: 683 PYLPSTPGGQPMTPN---SASYLPGTPGGQPMT--PGTGGLDAMSPVIGADNEG 731
P QPM P S S P TP G T PGT P+ G G
Sbjct: 612 PGT-----SQPMVPTPGASTSSQPATPSGSTQTPKPGTSQPTTTGPISGVGELG 660
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 33.5 bits (75), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 26/101 (25%)
Query: 613 YTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRD 672
Y+P SP ++ +P TSPQY P SP TP + +PR
Sbjct: 1734 YSPTSP---SYSPTSPQYSPTSPQYSPSSP--------------TYTPSSPTYNPTSPRG 1776
Query: 673 SSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTP 713
SS Y P++P P +P SY P +P P +P
Sbjct: 1777 FSSPQ------YSPTSPTYSPTSP---SYTPSSPQYSPTSP 1808
>sp|Q6PFM4|LNPB_DANRE Protein lunapark-B OS=Danio rerio GN=lnpb PE=2 SV=2
Length = 402
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 43/184 (23%)
Query: 540 QMKVVTVDRSMISDNVVVSTPYRDT----PRYGMGSETPMHPSRTPLHPYMTPMRDAGAT 595
+++ + + I + V+ + Y++ R+ S+ TP+ P+MTP
Sbjct: 108 KLEDLKTQKRKILEEVMETETYKNAKLILERFDPESKKKAEAEATPVRPHMTPRPGQELR 167
Query: 596 PIHDGMRTPMRDRAWNPYT-PMSPPRDNWEDGNPGSWGTSP-QYQPGSPPSRAYEAPTPG 653
H M TP P PMSP GT+P + PG PP +
Sbjct: 168 QRHIAMATP------GPVLGPMSP-------------GTTPLRTAPGGPPEKGL------ 202
Query: 654 SGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTP 713
+G ASTP G S A TP+ +N P +PG P S PG P +P+ P
Sbjct: 203 AGSASTPAGA-SQAETPQQMMRRSMN------PYSPG-----PGSGMRPPGPPLARPILP 250
Query: 714 GTGG 717
G
Sbjct: 251 RERG 254
>sp|Q9HBB8|CDHR5_HUMAN Cadherin-related family member 5 OS=Homo sapiens GN=CDHR5 PE=1 SV=3
Length = 845
Score = 33.1 bits (74), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 687 STPGGQPMTPNSASYLPGTPGG-----------QPMTPGTGGLDAMSPV 724
STPGG P NS S+ P TPGG QPM PG G + P
Sbjct: 516 STPGGPPGAENSTSHQPATPGGDTAQTPKPGTSQPMPPGVGTSTSHQPA 564
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,070,261
Number of Sequences: 539616
Number of extensions: 17731054
Number of successful extensions: 59466
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 769
Number of HSP's that attempted gapping in prelim test: 53530
Number of HSP's gapped (non-prelim): 4607
length of query: 838
length of database: 191,569,459
effective HSP length: 126
effective length of query: 712
effective length of database: 123,577,843
effective search space: 87987424216
effective search space used: 87987424216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)