Query 003225
Match_columns 838
No_of_seqs 309 out of 502
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:47:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckk_A KIN17; beta barrel, rib 99.9 1.8E-23 6.3E-28 198.8 12.1 105 730-836 11-127 (127)
2 2do3_A Transcription elongatio 99.9 7.2E-23 2.5E-27 172.8 5.9 65 263-327 5-69 (69)
3 2e70_A Transcription elongatio 99.8 1.5E-21 5.3E-26 165.8 8.7 59 497-555 10-68 (71)
4 3h7h_B Transcription elongatio 99.7 1E-18 3.4E-23 161.2 4.1 76 1-76 26-106 (106)
5 3p8b_B Transcription antitermi 99.7 2.7E-16 9.2E-21 153.9 12.0 102 9-110 29-130 (152)
6 2exu_A Transcription initiatio 99.6 8.7E-16 3E-20 156.0 4.6 67 1-67 122-193 (200)
7 2do3_A Transcription elongatio 99.1 8.7E-11 3E-15 99.4 6.6 54 221-276 15-68 (69)
8 1m1h_A Transcription antitermi 98.7 1.2E-08 4E-13 107.4 6.5 96 10-105 123-228 (248)
9 2e6z_A Transcription elongatio 98.7 1.9E-08 6.6E-13 83.2 5.4 56 220-275 4-59 (59)
10 2jvv_A Transcription antitermi 98.7 1.6E-08 5.4E-13 101.5 5.7 86 21-106 64-162 (181)
11 2xhc_A Transcription antitermi 98.6 6.5E-08 2.2E-12 106.5 9.7 98 9-106 219-333 (352)
12 3lpe_A Putative transcription 98.4 3.5E-07 1.2E-11 82.2 6.4 57 9-65 36-92 (92)
13 2oug_A Transcriptional activat 97.9 1.9E-07 6.3E-12 91.8 -7.1 81 19-99 48-137 (162)
14 2e70_A Transcription elongatio 97.2 0.00038 1.3E-08 59.4 5.7 53 396-453 14-68 (71)
15 1nz9_A Transcription antitermi 97.1 0.0008 2.7E-08 55.0 6.0 53 222-274 3-57 (58)
16 1nz9_A Transcription antitermi 97.1 0.00077 2.6E-08 55.1 5.7 36 70-105 3-38 (58)
17 1twf_A B220, DNA-directed RNA 96.9 0.00014 4.7E-09 93.9 0.0 6 277-282 1059-1064(1733)
18 1twf_A B220, DNA-directed RNA 96.8 0.00019 6.3E-09 92.7 0.0 7 446-452 1365-1371(1733)
19 2e6z_A Transcription elongatio 96.6 0.0017 5.8E-08 53.5 4.3 36 69-106 5-40 (59)
20 3p8b_B Transcription antitermi 95.9 0.013 4.4E-07 56.8 7.0 60 221-280 89-150 (152)
21 2ckk_A KIN17; beta barrel, rib 95.8 0.1 3.6E-06 49.3 12.5 87 221-309 12-106 (127)
22 2zjr_R 50S ribosomal protein L 95.1 0.02 6.7E-07 53.4 5.0 39 69-107 13-51 (115)
23 1nz8_A Transcription antitermi 94.9 0.011 3.7E-07 55.1 2.6 45 22-66 61-115 (119)
24 1vq8_T 50S ribosomal protein L 94.8 0.019 6.6E-07 53.8 3.9 39 69-107 40-78 (120)
25 2jvv_A Transcription antitermi 94.1 0.039 1.3E-06 54.9 4.5 54 221-274 125-180 (181)
26 3v2d_Y 50S ribosomal protein L 93.9 0.054 1.8E-06 50.1 4.7 33 398-430 5-39 (110)
27 2zkr_t 60S ribosomal protein L 93.4 0.07 2.4E-06 51.5 4.7 41 69-109 46-87 (145)
28 3r8s_U 50S ribosomal protein L 93.3 0.085 2.9E-06 48.1 4.9 28 399-426 3-30 (102)
29 3j21_U 50S ribosomal protein L 93.0 0.089 3E-06 49.4 4.7 33 398-430 44-78 (121)
30 2zjr_R 50S ribosomal protein L 92.8 0.085 2.9E-06 49.1 4.3 32 399-430 15-48 (115)
31 3j21_U 50S ribosomal protein L 92.7 0.097 3.3E-06 49.1 4.5 38 69-106 43-80 (121)
32 2zkr_t 60S ribosomal protein L 92.3 0.12 4.3E-06 49.8 4.9 33 398-430 47-82 (145)
33 3v2d_Y 50S ribosomal protein L 91.8 0.13 4.4E-06 47.5 4.1 36 70-105 5-40 (110)
34 3u5e_Y L33, YL33, 60S ribosoma 91.6 0.18 6.3E-06 47.6 5.0 41 69-109 47-87 (127)
35 3u5e_Y L33, YL33, 60S ribosoma 91.3 0.18 6.1E-06 47.6 4.6 34 398-431 48-83 (127)
36 3iz5_Y 60S ribosomal protein L 90.9 0.22 7.7E-06 48.1 4.9 33 398-430 47-81 (150)
37 4a17_S RPL26, 60S ribosomal pr 90.8 0.22 7.6E-06 47.4 4.7 41 69-109 46-86 (135)
38 3iz5_Y 60S ribosomal protein L 90.5 0.23 8E-06 48.0 4.7 39 69-107 46-84 (150)
39 2xhc_A Transcription antitermi 90.5 0.21 7.3E-06 54.9 5.0 53 222-274 297-351 (352)
40 3r8s_U 50S ribosomal protein L 90.4 0.26 8.9E-06 44.9 4.7 34 71-105 3-36 (102)
41 1vq8_T 50S ribosomal protein L 90.3 0.27 9.4E-06 46.0 4.8 35 786-820 43-77 (120)
42 4a17_S RPL26, 60S ribosomal pr 90.2 0.2 6.9E-06 47.7 3.9 33 398-430 47-81 (135)
43 1m1h_A Transcription antitermi 89.5 0.066 2.3E-06 56.2 0.0 54 221-274 192-247 (248)
44 3h8z_A FragIle X mental retard 89.3 2.8 9.6E-05 39.6 10.9 83 224-307 2-97 (128)
45 2ftc_N Mitochondrial ribosomal 88.3 0.54 1.9E-05 42.3 5.0 31 75-105 1-31 (96)
46 2ftc_N Mitochondrial ribosomal 85.8 0.81 2.8E-05 41.2 4.8 32 789-820 1-32 (96)
47 3bbo_W Ribosomal protein L24; 84.7 0.19 6.4E-06 50.5 0.1 28 399-426 68-95 (191)
48 1deq_A Fibrinogen (alpha chain 80.6 15 0.00051 40.4 12.8 9 699-707 367-375 (390)
49 3bbo_W Ribosomal protein L24; 80.2 0.23 7.8E-06 49.8 -1.3 35 71-105 68-102 (191)
50 2xzm_W 40S ribosomal protein S 74.8 7.9 0.00027 40.6 8.4 42 276-317 177-222 (260)
51 4a18_F RPL14; ribosome, eukary 70.8 3.9 0.00013 38.5 4.4 41 507-552 9-49 (126)
52 2jz2_A SSL0352 protein; SH3-li 70.4 9.2 0.00031 31.7 5.9 51 224-274 2-54 (66)
53 2jz2_A SSL0352 protein; SH3-li 68.9 13 0.00045 30.8 6.5 46 508-553 5-54 (66)
54 4gwq_H DNA-directed RNA polyme 65.7 5.6 0.00019 29.3 3.4 9 701-709 22-30 (35)
55 3iz5_N 60S ribosomal protein L 65.2 5.4 0.00019 37.9 4.2 34 507-541 9-42 (134)
56 3j20_E 30S ribosomal protein S 64.2 6.9 0.00024 40.8 5.1 44 276-320 179-228 (243)
57 1qp2_A Protein (PSAE protein); 63.6 7.4 0.00025 32.8 4.2 28 72-99 2-31 (70)
58 3iz6_D 40S ribosomal protein S 63.3 10 0.00035 39.9 6.3 41 276-316 175-219 (265)
59 3j21_5 50S ribosomal protein L 60.9 5.9 0.0002 34.6 3.4 27 71-97 3-29 (83)
60 1qp2_A Protein (PSAE protein); 59.2 19 0.00065 30.4 5.9 50 224-273 2-59 (70)
61 3iz5_N 60S ribosomal protein L 57.5 9.8 0.00033 36.2 4.5 33 71-104 6-38 (134)
62 3izc_N 60S ribosomal protein R 54.8 12 0.0004 35.8 4.6 33 71-104 14-46 (138)
63 1ah9_A IF1, initiation factor 53.5 26 0.00089 29.3 6.1 61 351-424 9-70 (71)
64 2eqj_A Metal-response element- 53.0 30 0.001 29.0 6.1 39 66-106 8-48 (66)
65 2ba0_A Archeal exosome RNA bin 53.0 17 0.0006 37.2 5.9 53 222-284 53-111 (229)
66 3u5c_E RP5, S7, YS6, 40S ribos 53.0 10 0.00035 39.9 4.1 41 276-316 175-219 (261)
67 1jmt_A Splicing factor U2AF 35 50.3 16 0.00053 32.5 4.5 36 12-47 53-92 (104)
68 1ts9_A Ribonuclease P protein 50.3 34 0.0011 31.0 6.6 47 504-552 13-62 (102)
69 2khj_A 30S ribosomal protein S 49.5 50 0.0017 29.5 7.7 54 222-285 27-85 (109)
70 2pe8_A Splicing factor 45; RRM 49.3 16 0.00054 32.6 4.3 36 12-47 39-80 (105)
71 2oqk_A Putative translation in 49.2 41 0.0014 31.0 7.2 71 341-425 24-96 (117)
72 2nn6_I 3'-5' exoribonuclease C 48.6 41 0.0014 34.0 7.8 53 222-284 77-144 (209)
73 4gwq_H DNA-directed RNA polyme 48.2 16 0.00055 26.9 3.3 11 701-711 15-25 (35)
74 2joy_A 50S ribosomal protein L 48.1 13 0.00043 33.3 3.4 27 71-97 3-29 (96)
75 2d9o_A DNAJ (HSP40) homolog, s 47.1 27 0.00093 30.9 5.5 37 12-48 43-79 (100)
76 4a18_F RPL14; ribosome, eukary 45.4 17 0.0006 34.1 4.0 38 71-109 6-45 (126)
77 1jb0_E Photosystem 1 reaction 45.4 22 0.00074 30.2 4.1 34 787-820 2-42 (75)
78 3v4m_A Splicing factor U2AF 65 44.3 18 0.00062 32.1 3.9 36 12-47 41-83 (105)
79 1jb0_E Photosystem 1 reaction 43.8 27 0.00093 29.6 4.5 42 72-114 1-47 (75)
80 2l55_A SILB,silver efflux prot 43.4 63 0.0022 27.9 7.0 60 240-299 6-71 (82)
81 2dgy_A MGC11102 protein; EIF-1 43.3 66 0.0023 29.5 7.5 72 341-426 7-81 (111)
82 1khi_A HEX1; membrane sealing, 43.0 22 0.00074 35.3 4.5 45 241-285 105-157 (176)
83 4fib_A Uncharacterized protein 41.2 1.2E+02 0.0042 28.4 8.9 82 224-307 1-99 (129)
84 1v76_A RNAse P protein PH1771P 41.2 47 0.0016 29.6 6.0 48 503-553 14-64 (96)
85 2k52_A Uncharacterized protein 40.8 48 0.0016 27.8 5.9 45 51-110 30-74 (80)
86 1dj7_B Ferredoxin thioredoxin 40.6 23 0.00077 30.4 3.6 27 224-250 1-41 (75)
87 1ib8_A Conserved protein SP14. 40.2 41 0.0014 32.7 6.0 50 504-553 100-155 (164)
88 3iz6_D 40S ribosomal protein S 40.1 39 0.0013 35.5 6.1 53 400-454 175-230 (265)
89 2wbr_A GW182, gawky, LD47780P; 40.0 42 0.0015 29.6 5.5 34 13-47 34-67 (89)
90 2zae_A Ribonuclease P protein 40.0 43 0.0015 31.5 5.8 49 502-553 44-95 (127)
91 3i4o_A Translation initiation 39.2 85 0.0029 27.1 7.1 61 351-424 17-78 (79)
92 2eqk_A Tudor domain-containing 38.8 85 0.0029 27.5 7.1 54 732-787 21-76 (85)
93 3kbg_A 30S ribosomal protein S 38.5 28 0.00094 35.6 4.6 26 276-301 139-164 (213)
94 1vq8_Q 50S ribosomal protein L 37.9 60 0.002 29.1 6.1 58 268-325 26-95 (96)
95 1wi5_A RRP5 protein homolog; S 37.6 1.9E+02 0.0065 26.0 9.8 52 222-285 17-77 (119)
96 3j21_5 50S ribosomal protein L 37.6 19 0.00063 31.5 2.7 36 275-310 3-38 (83)
97 2vb2_X Copper protein, cation 37.4 43 0.0015 29.3 5.1 48 239-286 17-72 (88)
98 2ivw_A PILP pilot protein; lip 36.9 38 0.0013 31.2 4.8 51 404-456 48-100 (113)
99 2krb_A Eukaryotic translation 36.1 43 0.0015 27.5 4.8 35 13-47 34-71 (81)
100 2qcp_X Cation efflux system pr 35.9 44 0.0015 28.6 4.9 48 239-286 9-64 (80)
101 2z0s_A Probable exosome comple 35.9 22 0.00076 36.5 3.5 53 222-284 62-123 (235)
102 2d9t_A Tudor domain-containing 35.6 1.6E+02 0.0054 24.9 8.3 54 732-787 9-65 (78)
103 1oqk_A Conserved protein MTH11 34.7 68 0.0023 28.6 6.0 49 503-552 13-64 (97)
104 3qr8_A GPV, baseplate assembly 34.7 2E+02 0.0068 28.7 10.3 60 748-809 19-84 (211)
105 3dxb_A Thioredoxin N-terminall 34.4 29 0.001 34.4 4.1 36 12-47 155-199 (222)
106 1bkb_A Translation initiation 34.3 1.1E+02 0.0037 28.8 7.7 66 221-292 59-128 (136)
107 2rcn_A Probable GTPase ENGC; Y 34.2 2.2E+02 0.0075 31.0 11.3 90 346-454 44-139 (358)
108 1ueb_A EF-P, TT0860, elongatio 33.6 1.6E+02 0.0054 29.2 9.1 72 221-301 51-124 (184)
109 2oug_A Transcriptional activat 33.3 0.49 1.7E-05 45.8 -9.0 30 222-251 108-137 (162)
110 3h8z_A FragIle X mental retard 32.8 2.6E+02 0.0088 26.2 9.9 82 749-832 19-114 (128)
111 2dit_A HIV TAT specific factor 32.2 33 0.0011 30.4 3.6 35 13-47 53-88 (112)
112 2cq2_A Hypothetical protein LO 32.2 38 0.0013 31.0 4.0 34 12-46 53-86 (114)
113 2nn6_G Exosome complex exonucl 32.1 26 0.00091 37.3 3.4 52 222-283 123-178 (289)
114 4a18_N RPL27, ribosomal protei 31.8 74 0.0025 30.5 6.0 37 71-107 4-46 (144)
115 2ftc_K 39S ribosomal protein L 31.1 69 0.0024 28.8 5.4 28 223-250 3-36 (98)
116 1iz6_A Initiation factor 5A; S 30.8 78 0.0027 29.9 6.1 62 221-286 57-123 (138)
117 2k52_A Uncharacterized protein 30.8 1.2E+02 0.0042 25.2 6.8 42 241-285 10-55 (80)
118 3ue2_A Poly(U)-binding-splicin 30.6 30 0.001 31.6 3.0 36 12-47 51-95 (118)
119 2k4k_A GSP13, general stress p 30.6 2.3E+02 0.0079 26.0 9.3 16 270-285 46-61 (130)
120 3s6e_A RNA-binding protein 39; 30.5 24 0.00081 32.1 2.4 52 13-64 44-100 (114)
121 3udc_A Small-conductance mecha 30.4 72 0.0025 33.4 6.5 44 221-272 126-169 (285)
122 3ghg_A Fibrinogen alpha chain; 30.3 11 0.00037 43.1 0.0 10 604-613 283-292 (562)
123 3m7n_A Putative uncharacterize 30.1 83 0.0028 30.8 6.4 51 223-284 55-120 (179)
124 2cq1_A PTB-like protein L; RRM 29.6 43 0.0015 29.5 3.8 31 12-43 41-71 (101)
125 3ghg_A Fibrinogen alpha chain; 28.9 12 0.0004 42.8 0.0 13 604-616 296-308 (562)
126 2eqs_A ATP-dependent RNA helic 28.9 2.4E+02 0.0082 24.7 8.7 23 270-302 55-77 (103)
127 1yby_A Translation elongation 28.4 1.3E+02 0.0046 30.5 7.7 72 221-301 81-155 (215)
128 3kbg_A 30S ribosomal protein S 27.9 1.4E+02 0.0047 30.5 7.6 70 749-819 98-176 (213)
129 2je6_I RRP4, exosome complex R 27.9 59 0.002 33.8 5.1 53 222-284 70-130 (251)
130 1gxi_E Photosystem I reaction 27.8 13 0.00046 31.3 0.2 29 72-100 2-32 (73)
131 3v2d_T 50S ribosomal protein L 27.5 84 0.0029 30.2 5.6 30 221-250 19-55 (146)
132 3izc_N 60S ribosomal protein R 27.1 36 0.0012 32.5 3.0 36 272-307 11-46 (138)
133 1ib8_A Conserved protein SP14. 26.9 63 0.0022 31.4 4.8 51 225-275 102-156 (164)
134 1qd7_I S17 ribosomal protein; 26.6 81 0.0028 27.8 5.0 49 239-287 4-61 (89)
135 2fhd_A RAD9 homolog, DNA repai 26.5 99 0.0034 29.8 5.8 26 221-248 61-86 (153)
136 3u5c_E RP5, S7, YS6, 40S ribos 26.2 39 0.0013 35.5 3.3 53 400-454 175-230 (261)
137 3i4o_A Translation initiation 26.2 1.6E+02 0.0054 25.4 6.6 60 236-297 12-75 (79)
138 2hzc_A Splicing factor U2AF 65 25.8 72 0.0025 26.1 4.5 34 12-47 43-76 (87)
139 2equ_A PHD finger protein 20-l 25.7 60 0.002 27.6 3.8 38 750-790 28-65 (74)
140 1why_A Hypothetical protein ri 25.6 52 0.0018 27.9 3.6 34 12-46 43-76 (97)
141 2joy_A 50S ribosomal protein L 25.4 43 0.0015 29.9 3.0 36 275-310 3-38 (96)
142 3r8s_P 50S ribosomal protein L 25.4 1E+02 0.0036 28.4 5.6 36 221-256 16-62 (114)
143 2vqe_Q 30S ribosomal protein S 25.2 93 0.0032 28.3 5.2 50 238-287 4-62 (105)
144 1wex_A Hypothetical protein (r 25.0 58 0.002 28.8 3.8 31 12-43 41-71 (104)
145 3s6w_A Tudor domain-containing 24.5 90 0.0031 24.3 4.5 49 223-273 1-52 (54)
146 4he6_A Peptidase family U32; u 24.1 1.1E+02 0.0037 26.3 5.3 28 220-247 26-53 (89)
147 1sjq_A Polypyrimidine tract-bi 24.0 65 0.0022 28.9 4.0 31 13-44 43-73 (105)
148 2khi_A 30S ribosomal protein S 23.9 62 0.0021 29.2 3.9 48 51-108 55-102 (115)
149 3tht_A Alkylated DNA repair pr 23.8 64 0.0022 35.1 4.6 34 12-46 46-79 (345)
150 1x4g_A Nucleolysin TIAR; struc 23.6 67 0.0023 27.9 4.0 35 12-47 51-85 (109)
151 1mhn_A SurviVal motor neuron p 23.5 1.7E+02 0.006 23.1 6.1 53 732-786 3-58 (59)
152 4a18_N RPL27, ribosomal protei 23.5 60 0.002 31.2 3.7 30 397-426 2-31 (144)
153 2qf4_A Cell shape determining 23.4 91 0.0031 30.4 5.3 24 519-542 45-68 (172)
154 3bbn_Q Ribosomal protein S17; 23.0 92 0.0032 29.8 4.9 50 238-287 61-119 (142)
155 2dnq_A RNA-binding protein 4B; 22.7 71 0.0024 26.6 3.8 32 12-46 34-65 (90)
156 2vv5_A MSCS, small-conductance 22.7 92 0.0031 32.6 5.5 45 221-273 127-171 (286)
157 2rm4_A CG6311-PB, DM EDC3; enh 22.5 1.2E+02 0.0041 27.1 5.2 52 502-553 6-66 (103)
158 1d7q_A Translation initiation 22.3 3.4E+02 0.012 25.9 8.8 71 341-425 23-95 (143)
159 2lc4_A PILP protein; type IV p 22.0 66 0.0023 29.5 3.6 50 404-455 52-103 (111)
160 3ddy_A Lumazine protein, LUMP; 21.9 5E+02 0.017 25.7 10.3 101 214-346 65-180 (186)
161 1x4c_A Splicing factor, argini 21.8 96 0.0033 26.9 4.7 34 12-47 41-74 (108)
162 3p8d_A Medulloblastoma antigen 21.8 1.9E+02 0.0066 24.1 6.1 49 223-274 6-55 (67)
163 2ja9_A Exosome complex exonucl 21.8 45 0.0015 32.9 2.7 50 224-283 5-59 (175)
164 3fdr_A Tudor and KH domain-con 21.1 2.1E+02 0.0071 24.6 6.6 36 749-786 46-81 (94)
165 1at0_A 17-hedgehog; developmen 21.1 1.9E+02 0.0067 27.0 6.9 75 222-300 19-117 (145)
166 2xnq_A Nuclear polyadenylated 21.0 85 0.0029 26.8 4.1 33 12-47 49-81 (97)
167 3j21_R 50S ribosomal protein L 20.9 1.5E+02 0.0051 26.6 5.6 52 222-273 33-94 (97)
168 1x5p_A Negative elongation fac 20.9 1.1E+02 0.0036 25.9 4.7 35 12-47 39-73 (97)
169 1ah9_A IF1, initiation factor 20.8 1.8E+02 0.0062 24.0 5.9 55 240-297 8-67 (71)
170 2cqd_A RNA-binding region cont 20.7 1.5E+02 0.0052 25.8 5.8 36 12-47 43-83 (116)
171 2cqc_A Arginine/serine-rich sp 20.7 95 0.0033 25.8 4.3 35 13-47 42-81 (95)
172 3j20_E 30S ribosomal protein S 20.7 1E+02 0.0035 32.0 5.1 73 748-820 134-217 (243)
173 1mhn_A SurviVal motor neuron p 20.5 2.7E+02 0.0092 22.0 6.7 51 222-274 2-55 (59)
174 1wi5_A RRP5 protein homolog; S 20.4 77 0.0026 28.7 3.8 46 52-107 48-93 (119)
175 4hcz_A PHD finger protein 1; p 20.4 1.8E+02 0.0062 23.7 5.4 55 222-279 2-58 (58)
176 2kr7_A FKBP-type peptidyl-prol 20.4 1.5E+02 0.005 28.1 6.0 46 223-268 93-138 (151)
177 2ytc_A PRE-mRNA-splicing facto 20.3 1.1E+02 0.0038 24.9 4.5 33 13-46 39-72 (85)
178 2oqk_A Putative translation in 20.2 3E+02 0.01 25.2 7.7 57 241-300 35-95 (117)
179 2zzd_A Thiocyanate hydrolase s 20.1 50 0.0017 31.0 2.4 32 399-430 36-77 (126)
180 2nlw_A Eukaryotic translation 20.0 1E+02 0.0035 26.7 4.4 35 13-47 48-85 (105)
No 1
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=198.76 Aligned_cols=105 Identities=22% Similarity=0.391 Sum_probs=94.7
Q ss_pred CCCCccCcEEE-E--e---cCCCccEEEEEEeCCCCeEEEEeccCCCCceEEecCCCceEcCCCCCCcEEEEcCCCCCce
Q 003225 730 EGPWFMPDILV-R--R---SGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGAT 803 (838)
Q Consensus 730 ~~~W~~~~I~V-~--~---~g~~~~~gvI~~V~~dg~~~V~l~~~~~g~~v~v~~~~Le~V~P~kgd~VkVi~G~~rG~t 803 (838)
.++|+++||+| + + .++++++|+|++|.++++|+|+|.++ |+.++++|+|||||+|++|++|+||+|+|||++
T Consensus 11 ~~~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~~~~c~V~l~~~--g~~v~v~q~~LETViP~~g~~V~Iv~G~~rG~~ 88 (127)
T 2ckk_A 11 TDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDS--GDKLKLDQTHLETVIPAPGKRILVLNGGYRGNE 88 (127)
T ss_dssp CSCCCCTTBEEEECCSTTCGGGTTCEEEEEEEETTTEEEEEETTT--CCEEEEEGGGEEECCCCTTCEEEECSSTTTTCE
T ss_pred CCCcccCCeEEEEEEccCCCcccCceEEEEEecCCCeEEEEECCC--CCEEEEchHHcEEecCCCCCEEEEEecccCCcE
Confidence 46899999999 5 2 23459999999998889999999887 689999999999999999999999999999999
Q ss_pred EEEEEEeCC--CeEEEecC----CCceEEEecccccccc
Q 003225 804 GKLIGVDGT--DGIVKVDV----SLDVKILDMAILAKLA 836 (838)
Q Consensus 804 G~LisiD~~--dgiVk~d~----~~~~kil~~~~L~Kl~ 836 (838)
|+|+++|.+ .|+|+|++ +..+++|+|++|||++
T Consensus 89 g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~~ 127 (127)
T 2ckk_A 89 GTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 127 (127)
T ss_dssp EEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEBC
T ss_pred EEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhccC
Confidence 999999988 99999996 3368899999999985
No 2
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=99.87 E-value=7.2e-23 Score=172.81 Aligned_cols=65 Identities=37% Similarity=0.663 Sum_probs=62.9
Q ss_pred ceeEEcchhhhhhccCCCeEEEeccccCCceEEEEEEeCcEEEEEeCCCCCeEEEcccccccccc
Q 003225 263 KTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE 327 (838)
Q Consensus 263 ~~i~v~~~~LrK~F~~GDhVkVi~G~~~getGlVvkVe~~~v~vlSD~t~~ei~V~~~dL~~~~e 327 (838)
-.|+|++++|||+|++||||||++|+|+|||||||+|+++.++||||++++||+||++||++|+|
T Consensus 5 ~~i~~p~~~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V~~~dL~~~~d 69 (69)
T 2do3_A 5 SSGEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 69 (69)
T ss_dssp SCCCCCCCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSSCSEEEECTTSEEESCC
T ss_pred cEEEEcHHHceeeccCCCeEEEeccEEcCceEEEEEEeCCEEEEEeCCCCCEEEEEhHHhhhhcC
Confidence 46899999999999999999999999999999999999999999999999999999999999975
No 3
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=165.78 Aligned_cols=59 Identities=39% Similarity=0.659 Sum_probs=53.7
Q ss_pred CCCCCCCccccCcEEEEeecCCCCceeEEEeecCCeEEEEeccCceEEEEecccccccc
Q 003225 497 RGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNV 555 (838)
Q Consensus 497 ~~~~g~rd~liGktV~I~~GpyKG~~G~Vkdat~~~~rVELhs~~k~I~V~r~~l~~~~ 555 (838)
+++..+||.||||||+|++||||||+|||||+|+++|||||||+||+|+|+|++|..++
T Consensus 10 ~gr~~grd~liGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs~~K~VtV~r~~l~~~~ 68 (71)
T 2e70_A 10 RGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVG 68 (71)
T ss_dssp CCSSCCTTSSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESSSCCEEEECTTTEEECC
T ss_pred CCCCcCccccCCCEEEEeccCCCCeEEEEEECCCCeEEEEecCCceEEEEEhhhccccC
Confidence 33334799999999999999999999999999999999999999999999999997654
No 4
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=99.73 E-value=1e-18 Score=161.23 Aligned_cols=76 Identities=45% Similarity=0.666 Sum_probs=63.1
Q ss_pred Ccccccc---CCCccEEEEEecCCCceEEEEEecChHHHHHHHhcCcceee--eeeeeeChhhhhhccccccccccCCCC
Q 003225 1 MQKCIDK---GSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS--QKVMLVPIREMTDVLAVESKAIDLSRD 75 (838)
Q Consensus 1 m~K~i~~---~~~l~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~~--~~~~~Vpi~Em~~~L~~~~~~~~l~~G 75 (838)
|+|+.++ +++|+|+|||+++++||||||||+++.||++||+|++|+|+ ++..+||++||+++|+++++...|++|
T Consensus 26 ~~k~~~~~~~~~~l~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~~~~~~~~lVpi~Em~~~L~~~k~~~~l~~G 105 (106)
T 3h7h_B 26 MRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLGSG 105 (106)
T ss_dssp HHHHHHHTTSSSCCCCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGGGGSSCCEECCGGGTTGGGCCEEC-------
T ss_pred HHHHHHhhccCCCcceEEEEecCCCceEEEEEeCCHHHHHHHHhcccceecccccceEEcHHHHHHhcCcCcccccCCCC
Confidence 5777763 57999999999999999999999999999999999999997 478999999999999999999999998
Q ss_pred C
Q 003225 76 T 76 (838)
Q Consensus 76 ~ 76 (838)
|
T Consensus 106 ~ 106 (106)
T 3h7h_B 106 C 106 (106)
T ss_dssp -
T ss_pred C
Confidence 6
No 5
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=99.66 E-value=2.7e-16 Score=153.93 Aligned_cols=102 Identities=30% Similarity=0.479 Sum_probs=94.6
Q ss_pred CCccEEEEEecCCCceEEEEEecChHHHHHHHhcCcceeeeeeeeeChhhhhhccccccccccCCCCCEEEEecCcCCCc
Q 003225 9 SELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGD 88 (838)
Q Consensus 9 ~~l~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~~~~~~~Vpi~Em~~~L~~~~~~~~l~~G~~VRik~G~ykGD 88 (838)
.+|+|++|++|+.++|||||||...++++.+|+++++|++....+||.+||.++|...+....+++|+||||++|+|+|+
T Consensus 29 ~~l~i~~v~vp~~fPGYVfVe~~~~~~~~~~v~~t~gV~~fvg~~v~~~Ei~~il~~~~~~~~~~~Gd~VrI~~Gpf~g~ 108 (152)
T 3p8b_B 29 YNLPIYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGEVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQ 108 (152)
T ss_dssp HTCCCCEEEECTTCCSEEEEEESSHHHHHHHHTTCTTEEEECSSCBCGGGTGGGCCCSCTTTTCCTTCEEEECSSTTTTC
T ss_pred cCCcEEEEEeecCCCcEEEEEEEchHHHHHHHhCCCCEEEeCCCCCCHHHHHHHhCcCCccccCCCCCEEEEeeecCCCC
Confidence 46779999999999999999999999999999999999986556999999999998776667899999999999999999
Q ss_pred eEEEEEEeCCCCEEEEEEeecc
Q 003225 89 LAKVVDVDNVRQRVTVKLIPRI 110 (838)
Q Consensus 89 laqV~~vd~~~~~V~vkliPRi 110 (838)
.|+|.++|.++++|+|++.+.-
T Consensus 109 ~g~V~~vd~~k~~v~V~v~~~g 130 (152)
T 3p8b_B 109 KAKVVKIDESKDEVVVQFIDAI 130 (152)
T ss_dssp EEEEEEEETTTTEEEEEESSCS
T ss_pred EEEEEEEeCCCCEEEEEEEecc
Confidence 9999999999999999999874
No 6
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8.7e-16 Score=156.01 Aligned_cols=67 Identities=28% Similarity=0.543 Sum_probs=61.5
Q ss_pred Ccccccc-----CCCccEEEEEecCCCceEEEEEecChHHHHHHHhcCcceeeeeeeeeChhhhhhcccccc
Q 003225 1 MQKCIDK-----GSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVES 67 (838)
Q Consensus 1 m~K~i~~-----~~~l~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~~~~~~~Vpi~Em~~~L~~~~ 67 (838)
|||+.++ +++|+|+|||+++++||||||||+++.||++||+||++||.+++.|||++||+++|++.-
T Consensus 122 ~~K~~~~~~~~~~~~l~I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~~~~lVPi~Em~dll~v~~ 193 (200)
T 2exu_A 122 LKKKFNLDRAMGKKKLKILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLLLKPNL 193 (200)
T ss_dssp HHHHHHHHHHSCSSCCCCCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEEEEEEEECCGGGHHHHHCSSC
T ss_pred HHHHHHhhhccCCCCccEEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhhcCCceEecHHHhHhHhhhhh
Confidence 6777632 589999999999999999999999999999999999999998889999999999999764
No 7
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=99.11 E-value=8.7e-11 Score=99.38 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=51.4
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhhhhhc
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYF 276 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~LrK~F 276 (838)
++.|++||||+|+.|+++|.+|+|++|++|.|+|++|.. +++|+|++++|+++-
T Consensus 15 rK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~SD~t--~~Ei~V~~~dL~~~~ 68 (69)
T 2do3_A 15 RKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLT--MHELKVLPRDLQLCS 68 (69)
T ss_dssp CSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSS--CSEEEECTTSEEESC
T ss_pred eeeccCCCeEEEeccEEcCceEEEEEEeCCEEEEEeCCC--CCEEEEEhHHhhhhc
Confidence 689999999999999999999999999999999999988 899999999999864
No 8
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=98.70 E-value=1.2e-08 Score=107.38 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=46.8
Q ss_pred CccEEEEEecCCCceEEEEEecChHHHHHHHhcCcceee-----eeeeeeChhhhhhcccccc-----ccccCCCCCEEE
Q 003225 10 ELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS-----QKVMLVPIREMTDVLAVES-----KAIDLSRDTWVR 79 (838)
Q Consensus 10 ~l~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~~-----~~~~~Vpi~Em~~~L~~~~-----~~~~l~~G~~VR 79 (838)
.+-|.=.....-++|||||||...++.|.+++++++|.+ .++.+||-+||..+|+... +...+++|+.||
T Consensus 123 rv~I~I~~~~~lfPGYvfv~~~~~d~~~~~v~~tp~V~~fv~~g~~P~pl~~~ev~~i~~~~~~~~~~~~~~~~~Gd~V~ 202 (248)
T 1m1h_A 123 KTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKVEFEKGDQVR 202 (248)
T ss_dssp TEEEEEEEECSSSTTEEEEEECCCHHHHHHHHTSTTEEEECEETTEECEECHHHHHHHHHHTTC----------------
T ss_pred eEEEEEeccccceeeEEEEEEeccHHHHHHHhcCCCeEEEEcCCCEEeEeCHHHHHHHHHhhccccCcccccCCCCCEEE
Confidence 344443445567899999999999999999999999984 3788999999999987632 245788999999
Q ss_pred EecCcCCCceEEEEEEeCCCCEEEEE
Q 003225 80 MKIGNYKGDLAKVVDVDNVRQRVTVK 105 (838)
Q Consensus 80 ik~G~ykGDlaqV~~vd~~~~~V~vk 105 (838)
|+.|||+|..|.|.++|.+++++.|.
T Consensus 203 I~~Gpf~g~~G~v~ev~~~k~~~~V~ 228 (248)
T 1m1h_A 203 VIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248)
T ss_dssp --------------------------
T ss_pred EeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 99999999999999999888776665
No 9
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=1.9e-08 Score=83.19 Aligned_cols=56 Identities=36% Similarity=0.542 Sum_probs=52.3
Q ss_pred cccccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhhhhh
Q 003225 220 KKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKY 275 (838)
Q Consensus 220 ~~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~LrK~ 275 (838)
....|++||.|+|++|.++|+.|+|++|++++|+|+..+.++..+++++.++|+|+
T Consensus 4 ~~~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~~fg~~tpvel~~~qv~K~ 59 (59)
T 2e6z_A 4 GSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKY 59 (59)
T ss_dssp CCSSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEECCSSCCSCEEEETTTEEEC
T ss_pred ccccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEEecCCCceEEEcHHHEEEC
Confidence 34689999999999999999999999999999999999888888999999999985
No 10
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=98.66 E-value=1.6e-08 Score=101.47 Aligned_cols=86 Identities=12% Similarity=0.190 Sum_probs=33.3
Q ss_pred CCceEEEEEecChHHHHHHHhcCcceee------eeeeeeChhhhhhcccccc-------ccccCCCCCEEEEecCcCCC
Q 003225 21 HLKNYIYIEADKEAHVKEACKGLRNIYS------QKVMLVPIREMTDVLAVES-------KAIDLSRDTWVRMKIGNYKG 87 (838)
Q Consensus 21 ~lkGyIyVEA~~~~~V~~ai~g~~~v~~------~~~~~Vpi~Em~~~L~~~~-------~~~~l~~G~~VRik~G~ykG 87 (838)
-++|||||++...++.+..|+++++|.+ .++.+||-+||..++.... ....+++|+.|||+.|||+|
T Consensus 64 lfPGYvFV~~~~~~~~~~~vr~t~gV~~fvg~~~~~P~pl~~~ei~~i~~~~~~~~~~~~~~~~~~~Gd~V~V~~GPf~g 143 (181)
T 2jvv_A 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFAD 143 (181)
T ss_dssp -----------------------------------------------------------CCCCCCCTTEEEEECSSTTTT
T ss_pred CCCCEEEEEEEcCcchhhhhhcCCCceEEccCCCCeEeEcCHHHHHHHHHHhhccccCCCccccCCCCCEEEEeccCCCC
Confidence 4999999999999899999999988863 4677899999999986532 23478899999999999999
Q ss_pred ceEEEEEEeCCCCEEEEEE
Q 003225 88 DLAKVVDVDNVRQRVTVKL 106 (838)
Q Consensus 88 DlaqV~~vd~~~~~V~vkl 106 (838)
..|.|.++|..+.++.|.|
T Consensus 144 ~~G~v~~v~~~k~r~~V~v 162 (181)
T 2jvv_A 144 FNGVVEEVDYEKSRLKVSV 162 (181)
T ss_dssp EEEEEEEEETTTTEEEEEE
T ss_pred cEEEEEEEeCCCCEEEEEE
Confidence 9999999998887776543
No 11
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=98.62 E-value=6.5e-08 Score=106.47 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=82.7
Q ss_pred CCccEEEEEecCCCceEEEEEecChHHHHHHHhcCcceee-----eeeeeeChhhhhhcccccc------------cccc
Q 003225 9 SELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS-----QKVMLVPIREMTDVLAVES------------KAID 71 (838)
Q Consensus 9 ~~l~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~~-----~~~~~Vpi~Em~~~L~~~~------------~~~~ 71 (838)
..+.|++...++-++||||||+...++.|..|+++++|.+ .++.+||.+||..+|.... ....
T Consensus 219 ~~i~i~k~v~rplFPGYVFV~m~~~d~~w~~Vr~tpGVtgFVg~g~kP~pl~~~EV~~il~~~~~~~~~~~~~~~~~~~~ 298 (352)
T 2xhc_A 219 KEIRIYKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYEEKKKPVKVELG 298 (352)
T ss_dssp EEEEEECEEEEESSTTEEEEEECCSHHHHHHHHTSTTCCEECCSSSSCCCCCHHHHHHHHHHTTCSCCC---------CC
T ss_pred ceEEEEEEEEecCCCCEEEEEEEcchhhHHHHhcCCCeeEEcCCCCEEeecCHHHHHHHHHhhccccccccccccccccc
Confidence 3455778888889999999999999999999999999974 4788999999998876432 1236
Q ss_pred CCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEE
Q 003225 72 LSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKL 106 (838)
Q Consensus 72 l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkl 106 (838)
+++|+.|||+.|||+|..|.|.++|..+.+++|.|
T Consensus 299 f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V 333 (352)
T 2xhc_A 299 FKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNV 333 (352)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEE
Confidence 88999999999999999999999999888877654
No 12
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=98.39 E-value=3.5e-07 Score=82.20 Aligned_cols=57 Identities=26% Similarity=0.461 Sum_probs=52.1
Q ss_pred CCccEEEEEecCCCceEEEEEecChHHHHHHHhcCcceeeeeeeeeChhhhhhcccc
Q 003225 9 SELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAV 65 (838)
Q Consensus 9 ~~l~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~~~~~~~Vpi~Em~~~L~~ 65 (838)
..++|+++++|+.++|||||||+..++++.+|+++++|.+.--.+++.+|+..+|++
T Consensus 36 ~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV~gfvg~pl~~~Ev~~il~p 92 (92)
T 3lpe_A 36 EQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRVRGIVPGTIAIEEIEPLLTP 92 (92)
T ss_dssp TTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTEEEECSSCCCHHHHHHHHCC
T ss_pred cCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCceEeCCCCCCHHHHHHHhCc
Confidence 467899999999999999999999999999999999999865559999999999863
No 13
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=97.87 E-value=1.9e-07 Score=91.85 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=62.4
Q ss_pred cCCCceEEEEEecChHHHHHHHhcCcceee-----eeeeeeChhhhhhcccccc----ccccCCCCCEEEEecCcCCCce
Q 003225 19 LDHLKNYIYIEADKEAHVKEACKGLRNIYS-----QKVMLVPIREMTDVLAVES----KAIDLSRDTWVRMKIGNYKGDL 89 (838)
Q Consensus 19 ~~~lkGyIyVEA~~~~~V~~ai~g~~~v~~-----~~~~~Vpi~Em~~~L~~~~----~~~~l~~G~~VRik~G~ykGDl 89 (838)
.+-++|||||++...++.+..|+++++|.+ .++.+||-+||..++.... ....+++|+.|||+.|+|+|..
T Consensus 48 ~plfpgYvFV~~~~~~~~~~~v~~~~gv~~fv~~g~~p~pi~~~ei~~i~~~~~~~~~~~~~~~~Gd~V~V~~Gpf~g~~ 127 (162)
T 2oug_A 48 EPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQ 127 (162)
T ss_dssp EESSTTEEEEEECTTTSCHHHHHHSTTEEEECCSSSSSCCCCCHHHHHHHHCC--------------CTTHHHHHHHHHH
T ss_pred EecCCCEEEEEEEcccCceEEEEeCCCccEEECCCCEeeEcCHHHHHHHHhhhcccccccCCCCCCCEEEEcccCCCCcE
Confidence 356999999999999888999999999874 4678899999999987642 2356899999999999999999
Q ss_pred EEEEEEeCCC
Q 003225 90 AKVVDVDNVR 99 (838)
Q Consensus 90 aqV~~vd~~~ 99 (838)
|.|.++|..+
T Consensus 128 g~v~~v~~~k 137 (162)
T 2oug_A 128 AIFTEPDGEA 137 (162)
T ss_dssp HHTTCSSHHH
T ss_pred EEEEEECCCC
Confidence 9999987653
No 14
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00038 Score=59.38 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=42.2
Q ss_pred CCCeecCCCEEEEEcCCCCCceeeEEEEECCE--EEEEeCceeccccEEEEeCCceEEec
Q 003225 396 NKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGI--LFIHDRHHLEHAGFICAKSSSCVVVG 453 (838)
Q Consensus 396 ~gn~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~~--lFL~~~~~~En~Gifv~~a~~~~~~g 453 (838)
.+++-.+|.+|+|.+|||||+.|.|+++..+. ++||++.. ++-+.-.++.+++
T Consensus 14 ~grd~liGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs~~K-----~VtV~r~~l~~~~ 68 (71)
T 2e70_A 14 RRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQ-----TISVDRQRLTTVG 68 (71)
T ss_dssp CCTTSSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESSSCC-----EEEECTTTEEECC
T ss_pred cCccccCCCEEEEeccCCCCeEEEEEECCCCeEEEEecCCce-----EEEEEhhhccccC
Confidence 36788999999999999999999999999997 78988764 3334555555443
No 15
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=97.08 E-value=0.0008 Score=54.98 Aligned_cols=53 Identities=23% Similarity=0.418 Sum_probs=43.6
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCC--eEEEeeCCCCCCceeEEcchhhhh
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEE--NVHIRPEMKGLPKTLAVNSKELCK 274 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d--~V~i~~~~~~l~~~i~v~~~~LrK 274 (838)
..|.+||.|+|++|.++|..|.|++++.+ .+.++-+.-+...++++..++|.|
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence 46899999999999999999999999876 577776655444567888887765
No 16
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=97.06 E-value=0.00077 Score=55.08 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=33.1
Q ss_pred ccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEE
Q 003225 70 IDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVK 105 (838)
Q Consensus 70 ~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vk 105 (838)
..+++||.|||++|+|+|..|.|.+++..+.++.|.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~ 38 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE
Confidence 468899999999999999999999999988888776
No 17
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=96.92 E-value=0.00014 Score=93.89 Aligned_cols=6 Identities=50% Similarity=0.977 Sum_probs=2.3
Q ss_pred cCCCeE
Q 003225 277 EPGNHV 282 (838)
Q Consensus 277 ~~GDhV 282 (838)
++|+-|
T Consensus 1059 ~pGe~V 1064 (1733)
T 1twf_A 1059 HPGEMV 1064 (1733)
T ss_dssp CTTCCH
T ss_pred CCCchh
Confidence 334433
No 18
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=96.82 E-value=0.00019 Score=92.67 Aligned_cols=7 Identities=0% Similarity=0.026 Sum_probs=2.7
Q ss_pred CCceEEe
Q 003225 446 SSSCVVV 452 (838)
Q Consensus 446 a~~~~~~ 452 (838)
-||+.|+
T Consensus 1365 ~RHl~Ll 1371 (1733)
T 1twf_A 1365 YRHMALL 1371 (1733)
T ss_dssp HHHHHHH
T ss_pred chhhhhh
Confidence 3333333
No 19
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.61 E-value=0.0017 Score=53.51 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=30.9
Q ss_pred cccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEE
Q 003225 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKL 106 (838)
Q Consensus 69 ~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkl 106 (838)
...+++||.|||+.|+|+|..|+|.++|.+ +|+|.+
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~v 40 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVDGN--KITIMP 40 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEEE
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEEE
Confidence 457899999999999999999999999964 555554
No 20
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=95.90 E-value=0.013 Score=56.82 Aligned_cols=60 Identities=23% Similarity=0.213 Sum_probs=48.8
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCC--eEEEeeCCCCCCceeEEcchhhhhhccCCC
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEE--NVHIRPEMKGLPKTLAVNSKELCKYFEPGN 280 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d--~V~i~~~~~~l~~~i~v~~~~LrK~F~~GD 280 (838)
...|.+||.|+|++|-++|..|.|++|+.+ .+++.-..-+..-+++++.++++|.=+.+|
T Consensus 89 ~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~~~~ 150 (152)
T 3p8b_B 89 VSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISKLQK 150 (152)
T ss_dssp TTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEECC--
T ss_pred cccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEeccccc
Confidence 357999999999999999999999999977 577776655556689999999988655443
No 21
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=95.78 E-value=0.1 Score=49.30 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=64.7
Q ss_pred ccccCCCCEEEEecCc----cCCceeEEEEEe-CCeEEEeeCCCCCCceeEEcchhhhhhc-cCCCeEEEeccccCCceE
Q 003225 221 KGHFMKGDAVIVIKGD----LKNLKGWVEKVD-EENVHIRPEMKGLPKTLAVNSKELCKYF-EPGNHVKVVSGTQAGATG 294 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Ge----l~~l~G~V~~V~-~d~V~i~~~~~~l~~~i~v~~~~LrK~F-~~GDhVkVi~G~~~getG 294 (838)
..=+.+|=.|+|+.-. +-+-+|.|.+|. +..-.+.-..+ .+.|.+..++|.=.. +.|++|+|+.|.|.|.+|
T Consensus 12 ~~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~~~~c~V~l~~~--g~~v~v~q~~LETViP~~g~~V~Iv~G~~rG~~g 89 (127)
T 2ckk_A 12 DYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDS--GDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEG 89 (127)
T ss_dssp SCCCCTTBEEEECCSTTCGGGTTCEEEEEEEETTTEEEEEETTT--CCEEEEEGGGEEECCCCTTCEEEECSSTTTTCEE
T ss_pred CCcccCCeEEEEEEccCCCcccCceEEEEEecCCCeEEEEECCC--CCEEEEchHHcEEecCCCCCEEEEEecccCCcEE
Confidence 3457888899998642 788999999994 44544444323 355777777775432 789999999999999999
Q ss_pred EEEEEeCc--EEEEEeC
Q 003225 295 MVLKVEQH--VLIILSD 309 (838)
Q Consensus 295 lVvkVe~~--~v~vlSD 309 (838)
.++.++.+ .++|--|
T Consensus 90 ~L~~id~~~~~~~V~l~ 106 (127)
T 2ckk_A 90 TLESINEKTFSATIVIE 106 (127)
T ss_dssp EEEEEEGGGTEEEEEEC
T ss_pred EEEEEeCCCcEEEEEEc
Confidence 99999976 6655444
No 22
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=95.13 E-value=0.02 Score=53.39 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=35.5
Q ss_pred cccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEEe
Q 003225 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLI 107 (838)
Q Consensus 69 ~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkli 107 (838)
...|+.||.|.|++|.|||-.|+|..|+..+++|.|+-|
T Consensus 13 km~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGv 51 (115)
T 2zjr_R 13 KLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGV 51 (115)
T ss_dssp CCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSS
T ss_pred eCcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCc
Confidence 347999999999999999999999999999999998743
No 23
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=94.93 E-value=0.011 Score=55.10 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=39.7
Q ss_pred CceEEEEEecChH-----HHHHHHhcCcceee-----eeeeeeChhhhhhccccc
Q 003225 22 LKNYIYIEADKEA-----HVKEACKGLRNIYS-----QKVMLVPIREMTDVLAVE 66 (838)
Q Consensus 22 lkGyIyVEA~~~~-----~V~~ai~g~~~v~~-----~~~~~Vpi~Em~~~L~~~ 66 (838)
++||||||+...+ +.+..|+.+++|.+ .++.+||.+||..+|...
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV~gfvg~g~~P~pi~~~ev~~i~~~~ 115 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVS 115 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTCCCCCCSSSSSCBCCHHHHHHHHHHH
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCceEEeCCCCEEeECCHHHHHHHHHHH
Confidence 9999999999998 89999999999874 467899999999998753
No 24
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=94.79 E-value=0.019 Score=53.77 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=35.9
Q ss_pred cccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEEe
Q 003225 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLI 107 (838)
Q Consensus 69 ~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkli 107 (838)
...|+.||.|.|++|.|||-.|+|..|+..+++|+|+-|
T Consensus 40 ~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgv 78 (120)
T 1vq8_T 40 NVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDV 78 (120)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTC
T ss_pred cccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCe
Confidence 357999999999999999999999999999999998755
No 25
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=94.05 E-value=0.039 Score=54.88 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=43.0
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCC--eEEEeeCCCCCCceeEEcchhhhh
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEE--NVHIRPEMKGLPKTLAVNSKELCK 274 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d--~V~i~~~~~~l~~~i~v~~~~LrK 274 (838)
...|.+||.|+|++|-++|+.|.|++|+.+ .+.++-+.-+..-++++...++.|
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~vel~~~qvek 180 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETTEEEEEEECTTTEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEEECHHHEEE
Confidence 358999999999999999999999999865 577776654434567777777655
No 26
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=93.87 E-value=0.054 Score=50.05 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=28.8
Q ss_pred CeecCCCEEEEEcCCCCCceeeEEEEECC--EEEE
Q 003225 398 NTVAVKDVVRIVEGPCKGKQGPVEHIYRG--ILFI 430 (838)
Q Consensus 398 n~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~--~lFL 430 (838)
-.|+.||+|.|+.|.+||++|.|+.+++. .+++
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViV 39 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIV 39 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEE
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEE
Confidence 35889999999999999999999999974 4554
No 27
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=93.35 E-value=0.07 Score=51.52 Aligned_cols=41 Identities=27% Similarity=0.458 Sum_probs=37.3
Q ss_pred cccCCCCCEEEEecCcCCCce-EEEEEEeCCCCEEEEEEeec
Q 003225 69 AIDLSRDTWVRMKIGNYKGDL-AKVVDVDNVRQRVTVKLIPR 109 (838)
Q Consensus 69 ~~~l~~G~~VRik~G~ykGDl-aqV~~vd~~~~~V~vkliPR 109 (838)
...|+.||.|.|++|+|||-. |+|..|+..+++|+|+-|-+
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~ 87 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQR 87 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEE
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEe
Confidence 357999999999999999999 99999999999999986654
No 28
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=93.28 E-value=0.085 Score=48.09 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=26.4
Q ss_pred eecCCCEEEEEcCCCCCceeeEEEEECC
Q 003225 399 TVAVKDVVRIVEGPCKGKQGPVEHIYRG 426 (838)
Q Consensus 399 ~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~ 426 (838)
-|+.||+|.|+.|.+||++|.|+.+++.
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC
Confidence 5889999999999999999999999985
No 29
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.98 E-value=0.089 Score=49.38 Aligned_cols=33 Identities=33% Similarity=0.509 Sum_probs=29.0
Q ss_pred CeecCCCEEEEEcCCCCCceeeEEEEECC--EEEE
Q 003225 398 NTVAVKDVVRIVEGPCKGKQGPVEHIYRG--ILFI 430 (838)
Q Consensus 398 n~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~--~lFL 430 (838)
-.|+.||+|.|+.|.+||++|.|+.+++. .+++
T Consensus 44 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~V 78 (121)
T 3j21_U 44 LPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYV 78 (121)
T ss_dssp EECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEE
T ss_pred cccccCCEEEEeecCCCCcEeEEEEEEecCCEEEE
Confidence 47899999999999999999999999964 4555
No 30
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=92.82 E-value=0.085 Score=49.12 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=28.0
Q ss_pred eecCCCEEEEEcCCCCCceeeEEEEECC--EEEE
Q 003225 399 TVAVKDVVRIVEGPCKGKQGPVEHIYRG--ILFI 430 (838)
Q Consensus 399 ~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~--~lFL 430 (838)
.|..||+|.|+.|.+||++|.|+.+++. .+++
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~V 48 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVV 48 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEE
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEE
Confidence 5999999999999999999999999954 3444
No 31
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.66 E-value=0.097 Score=49.11 Aligned_cols=38 Identities=37% Similarity=0.479 Sum_probs=35.0
Q ss_pred cccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEE
Q 003225 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKL 106 (838)
Q Consensus 69 ~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkl 106 (838)
...|+.||-|.|++|.|||-.|+|..|+..++.|.|+=
T Consensus 43 ~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEg 80 (121)
T 3j21_U 43 NLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEG 80 (121)
T ss_dssp EEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETT
T ss_pred ccccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeC
Confidence 45789999999999999999999999999999999873
No 32
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=92.31 E-value=0.12 Score=49.79 Aligned_cols=33 Identities=36% Similarity=0.717 Sum_probs=28.7
Q ss_pred CeecCCCEEEEEcCCCCCce-eeEEEEECC--EEEE
Q 003225 398 NTVAVKDVVRIVEGPCKGKQ-GPVEHIYRG--ILFI 430 (838)
Q Consensus 398 n~i~~gd~Vki~~Gp~kG~~-G~Vkhi~r~--~lFL 430 (838)
-.|..||+|.|+.|++||++ |.|+.+++. .+++
T Consensus 47 ~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~V 82 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYI 82 (145)
T ss_dssp CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEE
T ss_pred cccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEE
Confidence 36999999999999999999 999999955 4544
No 33
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=91.81 E-value=0.13 Score=47.52 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=33.7
Q ss_pred ccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEE
Q 003225 70 IDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVK 105 (838)
Q Consensus 70 ~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vk 105 (838)
..|+.||-|.|++|.+||-.|+|..|+..+++|.|+
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVE 40 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE 40 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEET
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEe
Confidence 468899999999999999999999999999999886
No 34
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=91.62 E-value=0.18 Score=47.57 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=36.7
Q ss_pred cccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEEeec
Q 003225 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPR 109 (838)
Q Consensus 69 ~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkliPR 109 (838)
...|+.||-|.|++|.|||-.|+|+.|+..++.|.|+=|-+
T Consensus 47 s~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~ 87 (127)
T 3u5e_Y 47 ALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTK 87 (127)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEE
T ss_pred cccccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEE
Confidence 45789999999999999999999999999999999885544
No 35
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=91.34 E-value=0.18 Score=47.64 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=29.7
Q ss_pred CeecCCCEEEEEcCCCCCceeeEEEEECC--EEEEE
Q 003225 398 NTVAVKDVVRIVEGPCKGKQGPVEHIYRG--ILFIH 431 (838)
Q Consensus 398 n~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~--~lFL~ 431 (838)
-.|+.||+|.|+.|.+||++|.|+.+++. .+++.
T Consensus 48 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 83 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD 83 (127)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred ccccCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence 47899999999999999999999999974 46654
No 36
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=90.86 E-value=0.22 Score=48.15 Aligned_cols=33 Identities=30% Similarity=0.668 Sum_probs=29.1
Q ss_pred CeecCCCEEEEEcCCCCCceeeEEEEECC--EEEE
Q 003225 398 NTVAVKDVVRIVEGPCKGKQGPVEHIYRG--ILFI 430 (838)
Q Consensus 398 n~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~--~lFL 430 (838)
-.|+.||+|.|+.|.+||++|.|+.+++. .+++
T Consensus 47 ~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~V 81 (150)
T 3iz5_Y 47 IPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHV 81 (150)
T ss_dssp EECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred cccCCCCEEEEeecCCCCccceEEEEEcCCCEEEE
Confidence 37899999999999999999999999975 4555
No 37
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=90.78 E-value=0.22 Score=47.41 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=36.0
Q ss_pred cccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEEeec
Q 003225 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPR 109 (838)
Q Consensus 69 ~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkliPR 109 (838)
...|+.||-|.|++|.|||-.|+|+.|+..++.|.|+=|-+
T Consensus 46 s~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~ 86 (135)
T 4a17_S 46 SMPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISK 86 (135)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCE
T ss_pred cccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEE
Confidence 35799999999999999999999999999999998864433
No 38
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=90.54 E-value=0.23 Score=48.03 Aligned_cols=39 Identities=36% Similarity=0.463 Sum_probs=35.3
Q ss_pred cccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEEe
Q 003225 69 AIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLI 107 (838)
Q Consensus 69 ~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkli 107 (838)
...|+.||-|.|++|.|||-.|+|+.|+..++.|.|+=|
T Consensus 46 s~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGV 84 (150)
T 3iz5_Y 46 SIPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERI 84 (150)
T ss_dssp EEECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTC
T ss_pred ccccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCc
Confidence 357999999999999999999999999999999988633
No 39
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=90.53 E-value=0.21 Score=54.90 Aligned_cols=53 Identities=23% Similarity=0.430 Sum_probs=43.4
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCC--eEEEeeCCCCCCceeEEcchhhhh
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEE--NVHIRPEMKGLPKTLAVNSKELCK 274 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d--~V~i~~~~~~l~~~i~v~~~~LrK 274 (838)
..|.+||.|+|++|-++|+.|.|++|+.+ .++++-+.=+...++++...++.|
T Consensus 297 ~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~qVek 351 (352)
T 2xhc_A 297 LGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEK 351 (352)
T ss_dssp CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGGEEC
T ss_pred ccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHHEEE
Confidence 47999999999999999999999999876 577776654444567888877765
No 40
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=90.43 E-value=0.26 Score=44.90 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=31.8
Q ss_pred cCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEE
Q 003225 71 DLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVK 105 (838)
Q Consensus 71 ~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vk 105 (838)
.|+.||-|.|.+|.+||-.|+|.+|+.. ++|.|+
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVe 36 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE 36 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEe
Confidence 5789999999999999999999999998 998886
No 41
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=90.30 E-value=0.27 Score=46.00 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=31.2
Q ss_pred CCCCCcEEEEcCCCCCceEEEEEEeCCCeEEEecC
Q 003225 786 PRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDV 820 (838)
Q Consensus 786 P~kgd~VkVi~G~~rG~tG~LisiD~~dgiVk~d~ 820 (838)
=.+||.|.||.|.|.|.+|+++.++..++.|-+++
T Consensus 43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg 77 (120)
T 1vq8_T 43 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED 77 (120)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT
T ss_pred ccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC
Confidence 36899999999999999999999999988776653
No 42
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=90.20 E-value=0.2 Score=47.72 Aligned_cols=33 Identities=36% Similarity=0.592 Sum_probs=28.8
Q ss_pred CeecCCCEEEEEcCCCCCceeeEEEEECC--EEEE
Q 003225 398 NTVAVKDVVRIVEGPCKGKQGPVEHIYRG--ILFI 430 (838)
Q Consensus 398 n~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~--~lFL 430 (838)
-.|+.||+|.|+.|.+||++|.|+.+++. .+++
T Consensus 47 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~V 81 (135)
T 4a17_S 47 MPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHV 81 (135)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred ccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEE
Confidence 35899999999999999999999999975 3554
No 43
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=89.51 E-value=0.066 Score=56.17 Aligned_cols=54 Identities=31% Similarity=0.431 Sum_probs=0.0
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCC--eEEEeeCCCCCCceeEEcchhhhh
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEE--NVHIRPEMKGLPKTLAVNSKELCK 274 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d--~V~i~~~~~~l~~~i~v~~~~LrK 274 (838)
...|.+||.|+|++|-+.|..|.|..|+.+ .+.++-+.-+..-++++..+++.|
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifgr~tpv~l~~~~vek 247 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEK 247 (248)
T ss_dssp --------------------------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCCCcEEEEEcHHHEEe
Confidence 458999999999999999999999999876 455555444444567777777765
No 44
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=89.31 E-value=2.8 Score=39.62 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=59.9
Q ss_pred cCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhhh--------hhccCCCeEEEeccccC--C--
Q 003225 224 FMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELC--------KYFEPGNHVKVVSGTQA--G-- 291 (838)
Q Consensus 224 F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~Lr--------K~F~~GDhVkVi~G~~~--g-- 291 (838)
+-.++.|||..-+=.--+|.|..|.+|.++|.=+.. ...+-.|+.+++| +.|.+||.|.|-+=..+ .
T Consensus 2 ~~~~~~VEV~~~~G~~y~a~V~~v~~d~~~V~f~n~-w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~g 80 (128)
T 3h8z_A 2 YFQGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENN-WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCG 80 (128)
T ss_dssp TTTTCEEEEECTTSCEEEEEEEEECSSEEEEEETTC-TTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCE
T ss_pred cccccEEEEecCCCCEEEEEEEEEeCCcEEEEEccc-cCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCc
Confidence 446899999985445557999999999888887422 2234567777777 67999999999864332 1
Q ss_pred -ceEEEEEEeCcEEEEE
Q 003225 292 -ATGMVLKVEQHVLIIL 307 (838)
Q Consensus 292 -etGlVvkVe~~~v~vl 307 (838)
=.|.|+++.++.+.|-
T Consensus 81 Ww~a~I~~~kg~f~~V~ 97 (128)
T 3h8z_A 81 WWLARVRMMKGDFYVIE 97 (128)
T ss_dssp EEEEEEEEEETTEEEEE
T ss_pred cEEEEEEEeeCCEEEEE
Confidence 1688999999887775
No 45
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=88.26 E-value=0.54 Score=42.35 Aligned_cols=31 Identities=32% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCEEEEecCcCCCceEEEEEEeCCCCEEEEE
Q 003225 75 DTWVRMKIGNYKGDLAKVVDVDNVRQRVTVK 105 (838)
Q Consensus 75 G~~VRik~G~ykGDlaqV~~vd~~~~~V~vk 105 (838)
||-|.|++|.+||-.|+|..|+..+++|.|+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe 31 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG 31 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 7999999999999999999999999999887
No 46
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=85.83 E-value=0.81 Score=41.23 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCCCceEEEEEEeCCCeEEEecC
Q 003225 789 TDKIKIMGGPHRGATGKLIGVDGTDGIVKVDV 820 (838)
Q Consensus 789 gd~VkVi~G~~rG~tG~LisiD~~dgiVk~d~ 820 (838)
||+|.||.|.|.|.+|+++.++..+.-|-+++
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeG 32 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGG 32 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC
Confidence 79999999999999999999998877665553
No 47
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=84.71 E-value=0.19 Score=50.46 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=26.1
Q ss_pred eecCCCEEEEEcCCCCCceeeEEEEECC
Q 003225 399 TVAVKDVVRIVEGPCKGKQGPVEHIYRG 426 (838)
Q Consensus 399 ~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~ 426 (838)
.|+.||+|.|+.|.+||++|.|+.+++.
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k 95 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHKH 95 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCSS
T ss_pred eeecCCEEEEeecCCCCceEEEEEEECC
Confidence 4999999999999999999999999864
No 48
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.57 E-value=15 Score=40.45 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 003225 699 ASYLPGTPG 707 (838)
Q Consensus 699 ~~y~p~tpg 707 (838)
.+|.|..+|
T Consensus 367 ~~~~p~s~g 375 (390)
T 1deq_A 367 SSFRPDSSG 375 (390)
T ss_pred CCCCCCCCC
Confidence 345554433
No 49
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=80.20 E-value=0.23 Score=49.82 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=32.3
Q ss_pred cCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEE
Q 003225 71 DLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVK 105 (838)
Q Consensus 71 ~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vk 105 (838)
.|+.||-|.|++|.+||-.|+|..|+..+++|.|+
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVE 102 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK 102 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCS
T ss_pred eeecCCEEEEeecCCCCceEEEEEEECCCCEEEEe
Confidence 38899999999999999999999999998888765
No 50
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=74.83 E-value=7.9 Score=40.64 Aligned_cols=42 Identities=21% Similarity=0.448 Sum_probs=31.3
Q ss_pred ccCCCeEEEeccccCCceEEEEEEeCc----EEEEEeCCCCCeEEE
Q 003225 276 FEPGNHVKVVSGTQAGATGMVLKVEQH----VLIILSDTTKEDIRV 317 (838)
Q Consensus 276 F~~GDhVkVi~G~~~getGlVvkVe~~----~v~vlSD~t~~ei~V 317 (838)
|++|..|-|++|+|.|.+|.|+.+|.. .++.+.|..++++.-
T Consensus 177 fe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T 222 (260)
T 2xzm_W 177 LESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFAT 222 (260)
T ss_dssp CCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEE
T ss_pred ecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEE
Confidence 799999999999999999999987643 233344555544443
No 51
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=70.76 E-value=3.9 Score=38.54 Aligned_cols=41 Identities=27% Similarity=0.478 Sum_probs=32.1
Q ss_pred cCcEEEEeecCCCCceeEEEeecCCeEEEEeccCceEEEEeccccc
Q 003225 507 VGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMIS 552 (838)
Q Consensus 507 iGktV~I~~GpyKG~~G~Vkdat~~~~rVELhs~~k~I~V~r~~l~ 552 (838)
+|+-|.|..|||.|-++.|+|+-|.. ||.++..+ |.|..+.
T Consensus 9 vGRVv~i~~G~~aGklavIVdIID~n-rvLVdGp~----V~Rq~~n 49 (126)
T 4a18_F 9 VGRVVYINYGADKGKLAVIVNIINQN-RILIDGEH----IVRQVIP 49 (126)
T ss_dssp TTEEEEECSSTTTTEEEEEEEEETTT-EEEEEETT----EEEEEEE
T ss_pred cceEEEEccCCccCCEEEEEEEecCC-eEEEeCCC----cccceee
Confidence 79999999999999999999997754 66666665 5554443
No 52
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=70.38 E-value=9.2 Score=31.68 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=43.7
Q ss_pred cCCCCEEEEecCc--cCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhhhh
Q 003225 224 FMKGDAVIVIKGD--LKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCK 274 (838)
Q Consensus 224 F~~GD~V~V~~Ge--l~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~LrK 274 (838)
+.||-.|+|+.-+ +-+.+|.|.+|.++.+-++=+-....+-++|..++|..
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~ 54 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEA 54 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHcee
Confidence 5799999999885 47899999999999998888766666778999999875
No 53
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=68.91 E-value=13 Score=30.77 Aligned_cols=46 Identities=30% Similarity=0.338 Sum_probs=40.4
Q ss_pred CcEEEEeec--CCCCceeEEEeecCCeEEEEeccCc--eEEEEecccccc
Q 003225 508 GTTVKVRLG--PYKGYRGRVVDVKGQSVRVELESQM--KVVTVDRSMISD 553 (838)
Q Consensus 508 GktV~I~~G--pyKG~~G~Vkdat~~~~rVELhs~~--k~I~V~r~~l~~ 553 (838)
|.+|+++.- +|-||.|.|..+++..|-|...-.| |.||..-++|..
T Consensus 5 G~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~ 54 (66)
T 2jz2_A 5 GATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEA 54 (66)
T ss_dssp TCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEE
T ss_pred CCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHcee
Confidence 667777654 6999999999999999999999988 999999988865
No 54
>4gwq_H DNA-directed RNA polymerase II subunit RPB1; binding sites, mediator complex, models, molecular, phosphor protein structure, tertiary; 4.50A {Saccharomyces cerevisiae}
Probab=65.68 E-value=5.6 Score=29.27 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 003225 701 YLPGTPGGQ 709 (838)
Q Consensus 701 y~p~tpg~~ 709 (838)
|.|..|+.+
T Consensus 22 YsPtSP~Ys 30 (35)
T 4gwq_H 22 YSPTSPSYS 30 (35)
T ss_dssp SCCCCCCCC
T ss_pred cCCCCCCCC
Confidence 333333333
No 55
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=65.19 E-value=5.4 Score=37.93 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=28.6
Q ss_pred cCcEEEEeecCCCCceeEEEeecCCeEEEEeccCc
Q 003225 507 VGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQM 541 (838)
Q Consensus 507 iGktV~I~~GpyKG~~G~Vkdat~~~~rVELhs~~ 541 (838)
+|+-|.|..|+|.|-++.|+|+-|.. +|.++-.+
T Consensus 9 vGRVV~i~~Gr~aGk~avIV~iiD~~-rvLVdG~~ 42 (134)
T 3iz5_N 9 IGRVALVNYGKDYGRLVVIVDVVDQN-RALVDAPD 42 (134)
T ss_dssp SSEEEECSCCSSSCCEEEEEEECSSS-EEEEEETT
T ss_pred cCeEEEEeeCCCCCCEEEEEEEcCCC-eEEEeCCC
Confidence 79999999999999999999997754 55556555
No 56
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=64.16 E-value=6.9 Score=40.77 Aligned_cols=44 Identities=23% Similarity=0.441 Sum_probs=34.3
Q ss_pred ccCCCeEEEeccccCCceEEEEEEeC------cEEEEEeCCCCCeEEEccc
Q 003225 276 FEPGNHVKVVSGTQAGATGMVLKVEQ------HVLIILSDTTKEDIRVFAD 320 (838)
Q Consensus 276 F~~GDhVkVi~G~~~getGlVvkVe~------~~v~vlSD~t~~ei~V~~~ 320 (838)
|++|..|-|++|+|.|+.|.|+.+|. +.|+ +.|..++++.-..+
T Consensus 179 f~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~-v~d~~g~~F~T~~~ 228 (243)
T 3j20_E 179 FEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVT-IEDEEGELFDTLKE 228 (243)
T ss_dssp CCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEE-EEESSCCCEEEETT
T ss_pred ccCCCEEEEECCccceEEEEEEEEEEecCCCceEEE-EEcCCCCEEEEEec
Confidence 78999999999999999999999984 3444 45766666654333
No 57
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=63.65 E-value=7.4 Score=32.82 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=25.0
Q ss_pred CCCCCEEEEec--CcCCCceEEEEEEeCCC
Q 003225 72 LSRDTWVRMKI--GNYKGDLAKVVDVDNVR 99 (838)
Q Consensus 72 l~~G~~VRik~--G~ykGDlaqV~~vd~~~ 99 (838)
|++|+-|||+| --|=+|.|+|..||.++
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~ 31 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSG 31 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCC
Confidence 67999999998 57999999999999864
No 58
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=63.32 E-value=10 Score=39.92 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=31.0
Q ss_pred ccCCCeEEEeccccCCceEEEEEEeCc----EEEEEeCCCCCeEE
Q 003225 276 FEPGNHVKVVSGTQAGATGMVLKVEQH----VLIILSDTTKEDIR 316 (838)
Q Consensus 276 F~~GDhVkVi~G~~~getGlVvkVe~~----~v~vlSD~t~~ei~ 316 (838)
|++|..|-|++|+|.|+.|.|+.+|.. .++-+.|..++++.
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~ 219 (265)
T 3iz6_D 175 FDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFA 219 (265)
T ss_dssp CSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEE
Confidence 889999999999999999999999862 13334455554443
No 59
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.93 E-value=5.9 Score=34.63 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=24.5
Q ss_pred cCCCCCEEEEecCcCCCceEEEEEEeC
Q 003225 71 DLSRDTWVRMKIGNYKGDLAKVVDVDN 97 (838)
Q Consensus 71 ~l~~G~~VRik~G~ykGDlaqV~~vd~ 97 (838)
.+++|..|.+..|.|+|-+|.|+++-+
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD 29 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIID 29 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECS
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcC
Confidence 478999999999999999999999744
No 60
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=59.15 E-value=19 Score=30.39 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=35.7
Q ss_pred cCCCCEEEEecCcc--CCceeEEEEEeCCe----EEEeeCCCCCCceeE--Ecchhhh
Q 003225 224 FMKGDAVIVIKGDL--KNLKGWVEKVDEEN----VHIRPEMKGLPKTLA--VNSKELC 273 (838)
Q Consensus 224 F~~GD~V~V~~Gel--~~l~G~V~~V~~d~----V~i~~~~~~l~~~i~--v~~~~Lr 273 (838)
+++|+.|+|++-|- -|..|.|.+|+.+. |.++=+.-+.....+ |-.+||.
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe 59 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELV 59 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEE
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHee
Confidence 57899999999865 69999999999886 777755333222233 5555554
No 61
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=57.47 E-value=9.8 Score=36.19 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=28.1
Q ss_pred cCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEE
Q 003225 71 DLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTV 104 (838)
Q Consensus 71 ~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~v 104 (838)
-+++|..|.+..|+|+|-+|.|++|-+. +.|.|
T Consensus 6 fvevGRVV~i~~Gr~aGk~avIV~iiD~-~rvLV 38 (134)
T 3iz5_N 6 FVEIGRVALVNYGKDYGRLVVIVDVVDQ-NRALV 38 (134)
T ss_dssp SCCSSEEEECSCCSSSCCEEEEEEECSS-SEEEE
T ss_pred ccccCeEEEEeeCCCCCCEEEEEEEcCC-CeEEE
Confidence 4789999999999999999999999664 45555
No 62
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=54.82 E-value=12 Score=35.79 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=28.4
Q ss_pred cCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEE
Q 003225 71 DLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTV 104 (838)
Q Consensus 71 ~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~v 104 (838)
.+++|..|.+..|+|+|-+|.|+++-+. +.|.|
T Consensus 14 fve~GrVV~i~~Gr~aGk~avIV~iiD~-~rVLV 46 (138)
T 3izc_N 14 LVEVGRVVLIKKGQSAGKLAAIVEIIDQ-KKVLI 46 (138)
T ss_dssp CSSTTEEEECCSCSSSCCEEEEEEECSS-SEEEE
T ss_pred hcccCeEEEEeeCCCCCCEEEEEEEecC-CEEEE
Confidence 6889999999999999999999999653 55554
No 63
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=53.50 E-value=26 Score=29.27 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=40.1
Q ss_pred EEEEEEEec-ceEEEEecCCCCCcEEEEEccccccccccCccccCCCCCeecCCCEEEEEcCCCCCceeeEEEEE
Q 003225 351 FGVIIRVES-EAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424 (838)
Q Consensus 351 vGvIv~ier-~~~~VL~~~~~~g~v~~vk~~~I~~K~~~~~~a~D~~gn~i~~gd~Vki~~Gp~kG~~G~Vkhi~ 424 (838)
.|.|++... +.|.|... +|.++.++.+---+| +.--+.+||.|.+---||..-.|.|.+-|
T Consensus 9 ~G~Vi~~lg~~~y~V~~~---~g~~~~~~i~Gk~Rk----------~~i~i~vGD~V~ve~~~~~~~kg~I~~r~ 70 (71)
T 1ah9_A 9 QGTVLETLPNTMFRVELE---NGHVVTAHISGKMRK----------NYIRILTGDKVTVELTPYDLSKGRIVFRS 70 (71)
T ss_dssp CEEEEEECSSSEEEEEET---TSCEEEEEECSSGGG----------TTCCCCTTCEECCEECSSCTTEEEECSCC
T ss_pred EEEEEEEeCCcEEEEEEC---CCCEEEEEEcceEec----------cCccCCCCCEEEEEEecCCCCEEEEEEEE
Confidence 499999998 67888653 567777775432221 22345699999986545555578876644
No 64
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=52.97 E-value=30 Score=28.98 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=32.2
Q ss_pred ccccccCCCCCEEEEe--cCcCCCceEEEEEEeCCCCEEEEEE
Q 003225 66 ESKAIDLSRDTWVRMK--IGNYKGDLAKVVDVDNVRQRVTVKL 106 (838)
Q Consensus 66 ~~~~~~l~~G~~VRik--~G~ykGDlaqV~~vd~~~~~V~vkl 106 (838)
+.....+++|+.|+-. .|.| -+|.|..|++.+..+.|++
T Consensus 8 ~~~~~~f~vGddVLA~wtDGl~--Y~gtI~~V~~~~gtC~V~F 48 (66)
T 2eqj_A 8 KKPACKFEEGQDVLARWSDGLF--YLGTIKKINILKQSCFIIF 48 (66)
T ss_dssp CCCCCCSCTTCEEEEECTTSCE--EEEEEEEEETTTTEEEEEE
T ss_pred ccccccccCCCEEEEEEccCcE--EEeEEEEEccCCcEEEEEE
Confidence 3345579999999987 4655 5999999999999999986
No 65
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=52.96 E-value=17 Score=37.25 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=33.2
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeC--CCCC--CceeE--EcchhhhhhccCCCeEEE
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPE--MKGL--PKTLA--VNSKELCKYFEPGNHVKV 284 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~--~~~l--~~~i~--v~~~~LrK~F~~GDhVkV 284 (838)
-..++||.| .|+|+.|.++.+.+.-. ..++ ..++. -..++++.+|++||.|++
T Consensus 53 y~p~~GDiV----------~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~a 111 (229)
T 2ba0_A 53 YTPSVGDVV----------IGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIA 111 (229)
T ss_dssp CCCCTTCEE----------EEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEE
T ss_pred ccCCCCCEE----------EEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEE
Confidence 356999998 47788888775544432 1111 11122 234578889999999864
No 66
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=52.96 E-value=10 Score=39.86 Aligned_cols=41 Identities=27% Similarity=0.513 Sum_probs=31.7
Q ss_pred ccCCCeEEEeccccCCceEEEEEEeCc----EEEEEeCCCCCeEE
Q 003225 276 FEPGNHVKVVSGTQAGATGMVLKVEQH----VLIILSDTTKEDIR 316 (838)
Q Consensus 276 F~~GDhVkVi~G~~~getGlVvkVe~~----~v~vlSD~t~~ei~ 316 (838)
|++|..|-|++|+|.|+.|.|+.+|.. .++-+.|..++++.
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~ 219 (261)
T 3u5c_E 175 FDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFV 219 (261)
T ss_dssp CCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEE
Confidence 789999999999999999999999862 23334465555554
No 67
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=50.34 E-value=16 Score=32.48 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=29.9
Q ss_pred cEEEEEecCC----CceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIALDH----LKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~~~----lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.+|..... .+||.|||-.+..+...|++.+.+-.
T Consensus 53 ~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 53 EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE
Confidence 3777777643 59999999999999999999887754
No 68
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=50.32 E-value=34 Score=30.99 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=40.7
Q ss_pred ccccCcEEEEeecC---CCCceeEEEeecCCeEEEEeccCceEEEEeccccc
Q 003225 504 DALVGTTVKVRLGP---YKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMIS 552 (838)
Q Consensus 504 d~liGktV~I~~Gp---yKG~~G~Vkdat~~~~rVELhs~~k~I~V~r~~l~ 552 (838)
.+|+|-.|+|.+=+ |-|..|+|.+-|..++.|+- .++..+|+|+.-.
T Consensus 13 adl~G~~v~Vv~S~~pslVGi~GiVV~ETkntf~I~t--~~~~k~VPK~~~v 62 (102)
T 1ts9_A 13 RDWIGLMVEVVESPNHSEVGIKGEVVDETQNTLKIMT--EKGLKVVAKRGRT 62 (102)
T ss_dssp SCCTTCEEEEEECSSGGGTTCEEEEEEECSSEEEEEE--SSSEEEEECTTCE
T ss_pred hhhcCCEEEEEEcCCCCccCcEEEEEEeccceEEEEe--CCcEEEEECCCEE
Confidence 68999999999887 56889999999999999986 7788888888754
No 69
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=49.50 E-value=50 Score=29.49 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=30.3
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCCeEEEe--eCCCCC--CceeE-EcchhhhhhccCCCeEEEe
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIR--PEMKGL--PKTLA-VNSKELCKYFEPGNHVKVV 285 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~--~~~~~l--~~~i~-v~~~~LrK~F~~GDhVkVi 285 (838)
..+++||.| .|+|.+|...-+.|. ...++| ..++. -....+.+.|++||.|+|.
T Consensus 27 ~~~~~G~iv----------~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 27 ALNKKGAIV----------TGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp TTCCSSSEE----------EEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred hcCCCCCEE----------EEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 467888876 466777765533332 222333 11110 0124567789999998764
No 70
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=49.28 E-value=16 Score=32.59 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=29.3
Q ss_pred cEEEEEec------CCCceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIAL------DHLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~------~~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.+|..+ .+.+||+|||-.+..+...|++.|-+-.
T Consensus 39 ~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 39 KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 36676664 2469999999999999999999988854
No 71
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=49.22 E-value=41 Score=31.00 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=48.2
Q ss_pred cceEEeC-CCcEEEEEEEec-ceEEEEecCCCCCcEEEEEccccccccccCccccCCCCCeecCCCEEEEEcCCCCCcee
Q 003225 341 RDLVLLD-NNSFGVIIRVES-EAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQG 418 (838)
Q Consensus 341 ~DLVqld-~~~vGvIv~ier-~~~~VL~~~~~~g~v~~vk~~~I~~K~~~~~~a~D~~gn~i~~gd~Vki~~Gp~kG~~G 418 (838)
.+|+..+ .+-.|.|++... +.|.|... +|.++.|....--++ .--|.+||.|.+---||..-.|
T Consensus 24 ~~~~~~~~~e~~G~Vi~~lgn~~y~V~~~---dG~~~l~~i~GK~Rk-----------~I~i~~GD~V~ve~~~~~~~kG 89 (117)
T 2oqk_A 24 RELVFKEEGQEYGQVQRMLGNGRLDAYCF---DGQKRLCHIRGKMRK-----------KVWVNPGDIVLVSLRDFQDSKG 89 (117)
T ss_dssp CCCCCCCTTEEEEEEEEEEETTEEEEEET---TSCEEEEECCHHHHH-----------HSCCCTTCEEEEEECTTCTTEE
T ss_pred hhccCCCCCEEEEEEEEEcCCCEEEEEeC---CCCEEEEEEcCceec-----------CCcCCCCCEEEEEEEcCCCCeE
Confidence 4555443 345799999998 67888653 577777775532111 1135599999998677766689
Q ss_pred eEEEEEC
Q 003225 419 PVEHIYR 425 (838)
Q Consensus 419 ~Vkhi~r 425 (838)
.|.+++.
T Consensus 90 ~I~~~~~ 96 (117)
T 2oqk_A 90 DIILKYT 96 (117)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9998886
No 72
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=48.59 E-value=41 Score=33.96 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=32.6
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCCe--EEEeeC--------CCCC--CceeE-Ecch--hhhhhccCCCeEEE
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEEN--VHIRPE--------MKGL--PKTLA-VNSK--ELCKYFEPGNHVKV 284 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~--V~i~~~--------~~~l--~~~i~-v~~~--~LrK~F~~GDhVkV 284 (838)
..+++||.| .|+|++|.... |.|..- .+++ ..++. -..+ +++++|++||.|++
T Consensus 77 y~p~vGDvV----------~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~a 144 (209)
T 2nn6_I 77 LLPDVGAIV----------TCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLA 144 (209)
T ss_dssp CCCCTTCEE----------EEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEE
T ss_pred CCCCCCCEE----------EEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEE
Confidence 468999998 47888888774 444321 1222 01111 1123 78899999999875
No 73
>4gwq_H DNA-directed RNA polymerase II subunit RPB1; binding sites, mediator complex, models, molecular, phosphor protein structure, tertiary; 4.50A {Saccharomyces cerevisiae}
Probab=48.20 E-value=16 Score=26.88 Aligned_cols=11 Identities=36% Similarity=0.754 Sum_probs=4.2
Q ss_pred CCCCCCCCCCC
Q 003225 701 YLPGTPGGQPM 711 (838)
Q Consensus 701 y~p~tpg~~p~ 711 (838)
|.|.+|+.+|.
T Consensus 15 YsPtSP~YsPt 25 (35)
T 4gwq_H 15 YSPTSPSYSPT 25 (35)
T ss_dssp CCSSSSCSCCC
T ss_pred cCCCCCCcCCC
Confidence 33334443333
No 74
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=48.07 E-value=13 Score=33.30 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=24.6
Q ss_pred cCCCCCEEEEecCcCCCceEEEEEEeC
Q 003225 71 DLSRDTWVRMKIGNYKGDLAKVVDVDN 97 (838)
Q Consensus 71 ~l~~G~~VRik~G~ykGDlaqV~~vd~ 97 (838)
.+++|..|.+..|.|+|-++.|+++-+
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD 29 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDIID 29 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEECS
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEeC
Confidence 478999999999999999999999944
No 75
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.08 E-value=27 Score=30.95 Aligned_cols=37 Identities=5% Similarity=0.019 Sum_probs=31.1
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCcceee
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS 48 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~~ 48 (838)
.|.+|..+..-+||=|||-....+...||+.+.++.+
T Consensus 43 ~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g 79 (100)
T 2d9o_A 43 EVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVD 79 (100)
T ss_dssp CEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSS
T ss_pred CEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCC
Confidence 3778877777899999999999999999998665543
No 76
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=45.40 E-value=17 Score=34.11 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=30.1
Q ss_pred cCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEE--eec
Q 003225 71 DLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKL--IPR 109 (838)
Q Consensus 71 ~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkl--iPR 109 (838)
.+++|-.|.|..|+|+|-||.|++|-+ +++|.|-= +||
T Consensus 6 fvevGRVv~i~~G~~aGklavIVdIID-~nrvLVdGp~V~R 45 (126)
T 4a18_F 6 FVQVGRVVYINYGADKGKLAVIVNIIN-QNRILIDGEHIVR 45 (126)
T ss_dssp EEETTEEEEECSSTTTTEEEEEEEEET-TTEEEEEETTEEE
T ss_pred ceecceEEEEccCCccCCEEEEEEEec-CCeEEEeCCCccc
Confidence 467999999999999999999999955 35666533 455
No 77
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=45.37 E-value=22 Score=30.18 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=28.9
Q ss_pred CCCCcEEEEcCC--CCCceEEEEEEeCCCe-----EEEecC
Q 003225 787 RKTDKIKIMGGP--HRGATGKLIGVDGTDG-----IVKVDV 820 (838)
Q Consensus 787 ~kgd~VkVi~G~--~rG~tG~LisiD~~dg-----iVk~d~ 820 (838)
++|++|+|+.=| +-..+|++.+||.+.| +||+|.
T Consensus 2 ~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdk 42 (75)
T 1jb0_E 2 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDK 42 (75)
T ss_dssp CTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSS
T ss_pred CCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEee
Confidence 579999999877 5678999999999866 788874
No 78
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=44.35 E-value=18 Score=32.14 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=30.4
Q ss_pred cEEEEEecC-------CCceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIALD-------HLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~~-------~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.+|..+. ..+||+|||-.+..+...|++.|-+-.
T Consensus 41 ~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 41 LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 478888763 358999999999999999999998855
No 79
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=43.78 E-value=27 Score=29.59 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCCCCEEEEec--CcCCCceEEEEEEeCC-CC--EEEEEEeeccchhh
Q 003225 72 LSRDTWVRMKI--GNYKGDLAKVVDVDNV-RQ--RVTVKLIPRIDLQA 114 (838)
Q Consensus 72 l~~G~~VRik~--G~ykGDlaqV~~vd~~-~~--~V~vkliPRiD~~~ 114 (838)
++.|+.|||+| --.=+|.|.|..||.+ +- -|+|+ .-..+|..
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VR-FdkVNY~g 47 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVR-FDKVNYTG 47 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEE-CSSCCSCS
T ss_pred CCCCCEEEEccccceeecCcceEEEEecCCCccccEEEE-Eeeecccc
Confidence 57899999998 3567999999999986 32 24554 23444533
No 80
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=43.40 E-value=63 Score=27.87 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=38.1
Q ss_pred ceeEEEEEeCCeEEEeeC-CCCCC---c--eeEEcchhhhhhccCCCeEEEeccccCCceEEEEEE
Q 003225 240 LKGWVEKVDEENVHIRPE-MKGLP---K--TLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKV 299 (838)
Q Consensus 240 l~G~V~~V~~d~V~i~~~-~~~l~---~--~i~v~~~~LrK~F~~GDhVkVi~G~~~getGlVvkV 299 (838)
.+|.|.+|+.+.|||.-. ..+|. = .+.+....+-+.+++||.|+..--+.++..=.|+++
T Consensus 6 ~~G~V~~vd~~~iTi~H~pI~~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~~g~~~it~i 71 (82)
T 2l55_A 6 AVGRIQSIGERSLIIAHEAIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLDPHGMATLVTV 71 (82)
T ss_dssp EEEEEEECCSSEEEEEECCCTTTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEEETTTEEEEEEE
T ss_pred EeEEEEEEccccEEEecCCccccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEECCCCeEEEEEE
Confidence 479999999998887643 23342 1 245555667788999999987643333213345444
No 81
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.30 E-value=66 Score=29.48 Aligned_cols=72 Identities=10% Similarity=0.096 Sum_probs=47.9
Q ss_pred cceEEe-CCCcEEEEEEEecce-EEEEecCCCCCcEEEEEccccccccccCccccCCCCCeecCCCEEEEEcCCCC-Cce
Q 003225 341 RDLVLL-DNNSFGVIIRVESEA-FQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCK-GKQ 417 (838)
Q Consensus 341 ~DLVql-d~~~vGvIv~ier~~-~~VL~~~~~~g~v~~vk~~~I~~K~~~~~~a~D~~gn~i~~gd~Vki~~Gp~k-G~~ 417 (838)
.+++.+ +.+..|+|+..-.+. |.|... +|..+.+.. ..|+.+ .==|..||.|.|---||- --.
T Consensus 7 ~e~~~p~ege~~g~V~~~lgn~~f~V~l~---nG~~~la~i---~GK~Rk--------~IwI~~GD~VlVe~~~yd~~~k 72 (111)
T 2dgy_A 7 GEHIVPSNQQQIVRVLRTPGNNLHEVETA---QGQRFLVSM---PSKYRK--------NIWIKRGDFLIVDPIEEGEKVK 72 (111)
T ss_dssp CSSCCCCSSCEEEEEEECCSSSEEEEECT---TSCEEEEEC---CTTCCS--------CCCCCSSCEEEEEECSSCSSCC
T ss_pred ccccCCCCCeEEEEEEEeCCCCEEEEEeC---CCCEEEEEe---chhhcc--------cEEEcCCCEEEEEecccCCcce
Confidence 344455 346789999998664 777773 566665543 333221 125788999999877875 357
Q ss_pred eeEEEEECC
Q 003225 418 GPVEHIYRG 426 (838)
Q Consensus 418 G~Vkhi~r~ 426 (838)
|.|.|.|+.
T Consensus 73 g~Iv~r~~~ 81 (111)
T 2dgy_A 73 AEISFVLCK 81 (111)
T ss_dssp EEEEEECCH
T ss_pred EEEEEEeCH
Confidence 999998873
No 82
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=42.99 E-value=22 Score=35.29 Aligned_cols=45 Identities=27% Similarity=0.298 Sum_probs=37.2
Q ss_pred eeEEEEEeCCeEEEeeCCCCCCceeEEcc-----hhhhhhccCCCe---EEEe
Q 003225 241 KGWVEKVDEENVHIRPEMKGLPKTLAVNS-----KELCKYFEPGNH---VKVV 285 (838)
Q Consensus 241 ~G~V~~V~~d~V~i~~~~~~l~~~i~v~~-----~~LrK~F~~GDh---VkVi 285 (838)
.+.|+.|+++.+.+|.+..+.++.|.++. ++|+..|+.|.. |.|+
T Consensus 105 ~yQlldI~dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~ 157 (176)
T 1khi_A 105 QYRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVV 157 (176)
T ss_dssp EEEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEE
T ss_pred EEEEEEEcCCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEE
Confidence 88899999999999988776678888886 378899999976 5444
No 83
>4fib_A Uncharacterized protein YDHK; structural genomics, PSI-biology, northeast structural genom consortium, NESG, SR518A, DUF1541, PF07563; 2.00A {Bacillus subtilis subsp} PDB: 2ky9_A
Probab=41.19 E-value=1.2e+02 Score=28.41 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=56.9
Q ss_pred cCCCCEEEEecCccCC---ceeEEEEEeCC---eEEEeeCCCCCCcee----EEcchhhhh----hccCCCeEEEeccc-
Q 003225 224 FMKGDAVIVIKGDLKN---LKGWVEKVDEE---NVHIRPEMKGLPKTL----AVNSKELCK----YFEPGNHVKVVSGT- 288 (838)
Q Consensus 224 F~~GD~V~V~~Gel~~---l~G~V~~V~~d---~V~i~~~~~~l~~~i----~v~~~~LrK----~F~~GDhVkVi~G~- 288 (838)
|.+||.|.+...-..+ ..+.|+...+. .|...|... .+++ -|-..+|++ .|++|+.|.+-+.-
T Consensus 1 ~~vGs~v~l~adHM~GM~gA~atI~ga~~Tt~Y~V~y~Pt~g--ge~V~nHkWVVpEEi~~a~~~~~~~GseV~l~AdHM 78 (129)
T 4fib_A 1 MKVGSQVIINTSHMKGMKGAEATVTGAYDTTAYVVSYTPTNG--GQRVDHHKWVIQEEIKDAGDKTLQPGDQVILEASHM 78 (129)
T ss_dssp CCTTCEEEECCCSSTTCTTCEEEEEEEEEEEEEEEEECCSSC--CSCEEEEEEEEGGGBTTCTTCCCCTTCEEEBCCCSS
T ss_pred CCCCCEEEEecccCCcCCCCeEEEEeeeeeeEEEEEeEECCC--CceeecceEEchhhccccCCCCCCCCCEEEEecccC
Confidence 5789999998886654 45566666555 355556543 2333 355566665 48999999887652
Q ss_pred --cCCceEEEEEEeCcEEEEE
Q 003225 289 --QAGATGMVLKVEQHVLIIL 307 (838)
Q Consensus 289 --~~getGlVvkVe~~~v~vl 307 (838)
-+|.++.|+...+..+...
T Consensus 79 ~GMkGA~AtI~~a~~tTvY~V 99 (129)
T 4fib_A 79 KGMKGATAEIDSAEKTTVYMV 99 (129)
T ss_dssp TTCTTCEEEEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEeeeeeeEEEE
Confidence 2589999999999888776
No 84
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=41.16 E-value=47 Score=29.65 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=40.7
Q ss_pred CccccCcEEEEeecC---CCCceeEEEeecCCeEEEEeccCceEEEEecccccc
Q 003225 503 HDALVGTTVKVRLGP---YKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD 553 (838)
Q Consensus 503 rd~liGktV~I~~Gp---yKG~~G~Vkdat~~~~rVELhs~~k~I~V~r~~l~~ 553 (838)
+.+|+|-.|+|.+=+ |-|..|+|.+-|..++.|+- ++..+|+|+.-.+
T Consensus 14 ~~dl~G~~v~Vv~S~~pslVGi~GiVV~ET~ntf~I~t---~~~~~VPK~~~vF 64 (96)
T 1v76_A 14 WHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLVIAG---DRIWKVPKDVSIF 64 (96)
T ss_dssp TSCCTTCEEEEEEESSGGGTTCEEEEEEECSSEEEEES---SSEEEEESTTEEE
T ss_pred hhhhcCCEEEEEEcCCCCccCcEEEEEEeccceEEEEc---CCEEEEECCCEEE
Confidence 468999999999877 56899999999999999986 4888888887543
No 85
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=40.78 E-value=48 Score=27.84 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=33.6
Q ss_pred eeeeChhhhhhccccccccccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEEeecc
Q 003225 51 VMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRI 110 (838)
Q Consensus 51 ~~~Vpi~Em~~~L~~~~~~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkliPRi 110 (838)
..++++.||..-- ...+++||.|++ +|.++|+.+.++.|.+.+-.
T Consensus 30 ~Gllh~sel~~~~-----~~~~~~Gd~V~v----------~V~~vd~~~~~i~lsl~~~~ 74 (80)
T 2k52_A 30 RGLLRPRDMISLR-----LENLNVGDEIIV----------QAIDVRPEKREIDFKYIPLE 74 (80)
T ss_dssp EEEECGGGCSSCC-----GGGCCTTCEEEE----------EEEEEETTTTEEEEEECSCC
T ss_pred EEEEEHHHCCccc-----ceeeCCCCEEEE----------EEEEEECCCCEEEEEEeecc
Confidence 4788988886421 135888999875 78999999899998876543
No 86
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=40.57 E-value=23 Score=30.40 Aligned_cols=27 Identities=37% Similarity=0.440 Sum_probs=22.1
Q ss_pred cCCCCEEEEecC--------------ccCCceeEEEEEeCC
Q 003225 224 FMKGDAVIVIKG--------------DLKNLKGWVEKVDEE 250 (838)
Q Consensus 224 F~~GD~V~V~~G--------------el~~l~G~V~~V~~d 250 (838)
.++||+|+|.+. ||+|+.|.|.++-++
T Consensus 1 mk~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmEGeV~~~v~~ 41 (75)
T 1dj7_B 1 MNVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTE 41 (75)
T ss_dssp CCTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECSE
T ss_pred CCCCCEEEEcccEEEEeCCccCCCCcccccCEEEEEEEEee
Confidence 368999999754 789999999998644
No 87
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=40.19 E-value=41 Score=32.75 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=40.0
Q ss_pred ccccCcEEEEee----cCCCCceeEEEeecCCeEEEEeccC--ceEEEEecccccc
Q 003225 504 DALVGTTVKVRL----GPYKGYRGRVVDVKGQSVRVELESQ--MKVVTVDRSMISD 553 (838)
Q Consensus 504 d~liGktV~I~~----GpyKG~~G~Vkdat~~~~rVELhs~--~k~I~V~r~~l~~ 553 (838)
..++|+.|+|+- .--|=+.|+++++++..+++++..+ .+.+.++.++|+-
T Consensus 100 ~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~v~l~~~~k~~~~~~~i~~~~I~k 155 (164)
T 1ib8_A 100 AGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKKTVQIPYSLVSK 155 (164)
T ss_dssp HHHCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSSCEEEEEECSSCCSS
T ss_pred HHhCCcEEEEEEecccCCceEEEEEEEEEeCCEEEEEEecccCCeEEEEEHHHCcE
Confidence 478999999985 2235589999999999999998753 4778888888863
No 88
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=40.13 E-value=39 Score=35.53 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=40.5
Q ss_pred ecCCCEEEEEcCCCCCceeeEEEEECC---EEEEEeCceeccccEEEEeCCceEEecc
Q 003225 400 VAVKDVVRIVEGPCKGKQGPVEHIYRG---ILFIHDRHHLEHAGFICAKSSSCVVVGG 454 (838)
Q Consensus 400 i~~gd~Vki~~Gp~kG~~G~Vkhi~r~---~lFL~~~~~~En~Gifv~~a~~~~~~g~ 454 (838)
+..|..|.|+.|.+-|+.|+|.||-+. +--+|-++. ++--|.++..|+.++|.
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~--~g~~F~T~~~nvfvIGk 230 (265)
T 3iz6_D 175 FDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDA--LGHQFATRLGNVFTIGK 230 (265)
T ss_dssp CSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCC--SSCCEEEEGGGEEEEEC
T ss_pred ccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEEC--CCCeEEEEeCeEEEEcc
Confidence 356779999999999999999999872 333443332 33369999999999986
No 89
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=40.04 E-value=42 Score=29.57 Aligned_cols=34 Identities=12% Similarity=0.007 Sum_probs=28.1
Q ss_pred EEEEEecCCCceEEEEEecChHHHHHHHhcCccee
Q 003225 13 IRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 13 I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
|.++-... -|||=|||...+.++..||+.|-+..
T Consensus 34 V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~ 67 (89)
T 2wbr_A 34 LVSFHPYL-NQGIALCKYTTREEANKAQMALNNCV 67 (89)
T ss_dssp EEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCE
Confidence 55555444 39999999999999999999998876
No 90
>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A
Probab=40.00 E-value=43 Score=31.53 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=41.4
Q ss_pred CCccccCcEEEEeecC---CCCceeEEEeecCCeEEEEeccCceEEEEecccccc
Q 003225 502 GHDALVGTTVKVRLGP---YKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD 553 (838)
Q Consensus 502 ~rd~liGktV~I~~Gp---yKG~~G~Vkdat~~~~rVELhs~~k~I~V~r~~l~~ 553 (838)
-+.+|+|-.|+|.+=+ |-|..|+|++-|..++.|+- ++..+|+|+.-.+
T Consensus 44 ~~aDl~Ga~v~Vv~S~~pslVGi~GiVV~ETknTf~I~t---~~~k~VPK~~~vF 95 (127)
T 2zae_A 44 IWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLVIAG---DRIWKVPKDVSIF 95 (127)
T ss_dssp TTSCCTTCEEEEEEESSGGGTTCEEEEEEEETTEEEEES---SSEEEEESTTEEE
T ss_pred HHHHhcCCEEEEEEcCCCCccCcEEEEEEcccceEEEEc---CCEEEEECCCeEE
Confidence 3579999999999876 56889999999999999986 5888999887543
No 91
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=39.19 E-value=85 Score=27.06 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=41.7
Q ss_pred EEEEEEEe-cceEEEEecCCCCCcEEEEEccccccccccCccccCCCCCeecCCCEEEEEcCCCCCceeeEEEEE
Q 003225 351 FGVIIRVE-SEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIY 424 (838)
Q Consensus 351 vGvIv~ie-r~~~~VL~~~~~~g~v~~vk~~~I~~K~~~~~~a~D~~gn~i~~gd~Vki~~Gp~kG~~G~Vkhi~ 424 (838)
.|+|++.- .+.|.|... +|.++.++.+- |+.+ +.--|.+||.|.+---||.--.|.|.+=|
T Consensus 17 ~G~Vik~l~n~~f~V~l~---nG~~~~c~i~G---K~Rk-------~~I~Il~GD~V~ve~~~yd~~kgrIi~R~ 78 (79)
T 3i4o_A 17 EGRVVEPLPNAMFRIELE---NGHKVLAHISG---KMRQ-------HYIRILPEDRVVVELSPYDLSRGRIVYRY 78 (79)
T ss_dssp EEEEEEEETTTEEEEEET---TSCEEEEEECH---HHHH-------TTCCCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEcCCCEEEEEeC---CCCEEEEEeCc---ceec-------CCccCCCCCEEEEEECccCCCcEEEEEEc
Confidence 49999999 777888873 57777777543 2211 11138999999997777755567776544
No 92
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.81 E-value=85 Score=27.51 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=39.2
Q ss_pred CCccCcEEEEecCCC--ccEEEEEEeCCCCeEEEEeccCCCCceEEecCCCceEcCCC
Q 003225 732 PWFMPDILVRRSGEE--SVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPR 787 (838)
Q Consensus 732 ~W~~~~I~V~~~g~~--~~~gvI~~V~~dg~~~V~l~~~~~g~~v~v~~~~Le~V~P~ 787 (838)
.|-.-+++-.+..++ =..|.|.++..++.+.|.+.|. |.+.+|+.++|-+..|+
T Consensus 21 ~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~Dy--Gn~~~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 21 KWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDV--GVELVVNVDCLRKLEEN 76 (85)
T ss_dssp CCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTT--CCEEEEETTTEEECCHH
T ss_pred CccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEcc--CCEEEEEccccccCCHH
Confidence 354444433333333 3388999999989999999999 68999999999887653
No 93
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=38.54 E-value=28 Score=35.58 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=24.7
Q ss_pred ccCCCeEEEeccccCCceEEEEEEeC
Q 003225 276 FEPGNHVKVVSGTQAGATGMVLKVEQ 301 (838)
Q Consensus 276 F~~GDhVkVi~G~~~getGlVvkVe~ 301 (838)
|++|..|-|++|+|.|..|.|+.+|.
T Consensus 139 f~~G~l~mvtgG~n~GriG~I~~ie~ 164 (213)
T 3kbg_A 139 MQPGNKAYITAGSHVNQTGTISKIEA 164 (213)
T ss_dssp CSTTCEEEECSSTTTTCEEEEEEECC
T ss_pred cCCCCEEEEECCCcceEEEEEEEEEE
Confidence 78999999999999999999999985
No 94
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=37.87 E-value=60 Score=29.12 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=40.7
Q ss_pred cchhhhhhccCCCeEEEec------c----ccCCceEEEEEEeCcEEEE-EeCCC-CCeEEEcccccccc
Q 003225 268 NSKELCKYFEPGNHVKVVS------G----TQAGATGMVLKVEQHVLII-LSDTT-KEDIRVFADDVVES 325 (838)
Q Consensus 268 ~~~~LrK~F~~GDhVkVi~------G----~~~getGlVvkVe~~~v~v-lSD~t-~~ei~V~~~dL~~~ 325 (838)
+.+-.-..|+.||.|-+.. | .|-|-||.|+.|-+.-+.| +.++. ++.|.|.+.+|..+
T Consensus 26 pls~~m~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk~vk~Kri~vr~eHik~s 95 (96)
T 1vq8_Q 26 PPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRRQ 95 (96)
T ss_dssp CSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETTEEEEEEECGGGEEEC
T ss_pred CHHHHHHHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEeecCCCcEEEeCHhHcccC
Confidence 3444445699999986652 3 5679999999999886554 45654 56777888777543
No 95
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=37.63 E-value=1.9e+02 Score=25.99 Aligned_cols=52 Identities=8% Similarity=0.094 Sum_probs=31.2
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchh---------hhhhccCCCeEEEe
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKE---------LCKYFEPGNHVKVV 285 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~---------LrK~F~~GDhVkVi 285 (838)
..|++||.| .|+|.+|.+--+-|.-... ..+.-...++ ..+.|++||.|+|.
T Consensus 17 ~~l~~G~i~----------~G~V~~v~~fG~fV~l~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 17 EALKPGMLL----------TGTVSSLEDHGYLVDIGVD--GTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp TTCCTTCEE----------EEEEEEECSSEEEEECCCS--SCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred hcCCCCCEE----------EEEEEEEeCceEEEEECCC--CeEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 468888876 5678888766443333211 1223333333 34789999998874
No 96
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.63 E-value=19 Score=31.47 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=29.1
Q ss_pred hccCCCeEEEeccccCCceEEEEEEeCcEEEEEeCC
Q 003225 275 YFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDT 310 (838)
Q Consensus 275 ~F~~GDhVkVi~G~~~getGlVvkVe~~~v~vlSD~ 310 (838)
.+++|--|.+.+|+|+|.-.+|+++-++...++.|-
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~ 38 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA 38 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECC
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECC
Confidence 478999999999999999999999855445555563
No 97
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=37.43 E-value=43 Score=29.31 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=33.2
Q ss_pred CceeEEEEEeCC--eEEEeeC-CCCCC-----ceeEEcchhhhhhccCCCeEEEec
Q 003225 239 NLKGWVEKVDEE--NVHIRPE-MKGLP-----KTLAVNSKELCKYFEPGNHVKVVS 286 (838)
Q Consensus 239 ~l~G~V~~V~~d--~V~i~~~-~~~l~-----~~i~v~~~~LrK~F~~GDhVkVi~ 286 (838)
-.+|.|.+|+.+ +|+|.-. .+.|. -.+.|....+-+-|++||.|+..-
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~ 72 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNF 72 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEE
Confidence 468999999966 6888632 22332 125555566778899999998764
No 98
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=36.89 E-value=38 Score=31.21 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=38.5
Q ss_pred CEEEEEcCCCCCc-eeeEEEEECCEEEEEeCceecc-ccEEEEeCCceEEecccC
Q 003225 404 DVVRIVEGPCKGK-QGPVEHIYRGILFIHDRHHLEH-AGFICAKSSSCVVVGGSR 456 (838)
Q Consensus 404 d~Vki~~Gp~kG~-~G~Vkhi~r~~lFL~~~~~~En-~Gifv~~a~~~~~~g~~~ 456 (838)
.+.+|..|-|=|+ .|.|.+|..+.+.|. +.+.+ .|-++.|...+.|.++.+
T Consensus 48 ~vyrVk~G~yiG~N~GrI~~It~~~I~l~--E~v~Dg~G~W~eR~~~L~L~~~~~ 100 (113)
T 2ivw_A 48 YVYTVGVGNYLGQNYGRIESITDDSIVLN--ELIEDSTGNWVSRKAELLLNSSDK 100 (113)
T ss_dssp EEEEECSSEEETTTEEEEEEEETTEEEEE--EEEECTTSSEEEEEEEEECCCSCC
T ss_pred cEEEEccCCEeccCCCEEEEEeCCeEEEE--EEEECCCCCEEEEeeEEEccCCCC
Confidence 3455556666665 799999999998884 55444 599999999999876643
No 99
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=36.12 E-value=43 Score=27.48 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=29.0
Q ss_pred EEEEEecC---CCceEEEEEecChHHHHHHHhcCccee
Q 003225 13 IRSVIALD---HLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 13 I~Sv~~~~---~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
|.++..+. ..+||-|||-.+..++..||+.+.+..
T Consensus 34 i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 34 ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp EEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred eEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 77776653 358999999999999999999888754
No 100
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=35.95 E-value=44 Score=28.64 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=33.1
Q ss_pred CceeEEEEEeCC--eEEEeeC-CCCCC-----ceeEEcchhhhhhccCCCeEEEec
Q 003225 239 NLKGWVEKVDEE--NVHIRPE-MKGLP-----KTLAVNSKELCKYFEPGNHVKVVS 286 (838)
Q Consensus 239 ~l~G~V~~V~~d--~V~i~~~-~~~l~-----~~i~v~~~~LrK~F~~GDhVkVi~ 286 (838)
...|.|.+|+.+ +|+|.-. .+.|. -.+.+....+-+-|++||.|+..-
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~ 64 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNF 64 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEE
Confidence 368999999876 5888632 22231 135556666778899999998764
No 101
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=35.85 E-value=22 Score=36.51 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=31.9
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeC--CCCCC-------ceeEEcchhhhhhccCCCeEEE
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPE--MKGLP-------KTLAVNSKELCKYFEPGNHVKV 284 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~--~~~l~-------~~i~v~~~~LrK~F~~GDhVkV 284 (838)
-..++||.|+ |+|++|.++.+.+.-. .+++- ...+-...+++++|++||.|++
T Consensus 62 y~p~~GDiV~----------G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a 123 (235)
T 2z0s_A 62 YVPQAGDVVI----------GLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKA 123 (235)
T ss_dssp CCCCTTCCEE----------EEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEE
T ss_pred cCCCCCCEEE----------EEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEE
Confidence 4568999884 7788888775544432 11110 0011123566679999999864
No 102
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=35.64 E-value=1.6e+02 Score=24.93 Aligned_cols=54 Identities=15% Similarity=0.074 Sum_probs=39.8
Q ss_pred CCccCcEEEEecCCC--ccEEEEEEeCC-CCeEEEEeccCCCCceEEecCCCceEcCCC
Q 003225 732 PWFMPDILVRRSGEE--SVVGVIREVLP-DGSCRVVLGSSGNGDTITALPNEIEIVPPR 787 (838)
Q Consensus 732 ~W~~~~I~V~~~g~~--~~~gvI~~V~~-dg~~~V~l~~~~~g~~v~v~~~~Le~V~P~ 787 (838)
.|..-++++.+-.+| =-.|+|.++.. ++.|.|...|. |....|..++|-++.++
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDY--GN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDY--GNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTT--TEEEEEEGGGEEECCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcC--CCeEEEcHHHeEeCCHH
Confidence 466656766222222 23789999965 48899999998 68899999999998775
No 103
>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit, hydrolase; NMR {Methanothermobacterthermautotrophicus} SCOP: b.137.1.1
Probab=34.70 E-value=68 Score=28.64 Aligned_cols=49 Identities=27% Similarity=0.529 Sum_probs=40.1
Q ss_pred CccccCcEEEEeecC---CCCceeEEEeecCCeEEEEeccCceEEEEeccccc
Q 003225 503 HDALVGTTVKVRLGP---YKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMIS 552 (838)
Q Consensus 503 rd~liGktV~I~~Gp---yKG~~G~Vkdat~~~~rVELhs~~k~I~V~r~~l~ 552 (838)
+.+|+|-.|+|.+=. |-|..|+|.+-|..++.|+-. .++..+|+|+.-.
T Consensus 13 ~~dl~G~~v~Vv~S~~pslvGi~GiVV~ET~ntf~I~t~-~~~~k~VPK~~~v 64 (97)
T 1oqk_A 13 RHELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMD-DGREITVPKGIAV 64 (97)
T ss_dssp CCCCSSCEEEEEECSSTTTTTCEEECCEEETTEEEEEET-TTEEEEEECTTCE
T ss_pred HHHhcCCEEEEEEcCCCCccCcEEEEEEcccceEEEEcC-CCcEEEEECCCEE
Confidence 468999999999877 568899999999999998743 3488888888643
No 104
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=34.70 E-value=2e+02 Score=28.72 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=38.5
Q ss_pred cEEEEEEeCC-CCeEEEEeccCCCCceEEecCC----CceEcCCCCCCcEEEEcC-CCCCceEEEEEE
Q 003225 748 VVGVIREVLP-DGSCRVVLGSSGNGDTITALPN----EIEIVPPRKTDKIKIMGG-PHRGATGKLIGV 809 (838)
Q Consensus 748 ~~gvI~~V~~-dg~~~V~l~~~~~g~~v~v~~~----~Le~V~P~kgd~VkVi~G-~~rG~tG~Lisi 809 (838)
+.|+|.+|.. .+.|+|.+.+.. .+-+.+.+- .=...+|..||.|.|+.= .++ ..|..++-
T Consensus 19 r~G~V~~vd~~~~rvrV~~~~~~-t~wl~~~~~~ag~~~~~~~P~vGeqV~v~f~~Gd~-~~gvVlg~ 84 (211)
T 3qr8_A 19 RTGIIVETDLNAGRCRVQTGGMC-TDWLQWLTHRAGRSRTWWAPSVGEQVLILAVGGEL-DTAFVLPG 84 (211)
T ss_dssp EEEEEEEEETTTTEEEEEETTEE-CCCEEECCSCBSSSBCCCCCCTTCEEEEEECCTTT-CCEEEEEE
T ss_pred EEEEEEEEECCCCEEEEEeCCcc-ceeEEeEcccccCCceEeCCCCCCEEEEEeCCCcc-CccEEEee
Confidence 4899999953 467899986542 344444332 234678999999999952 222 35666643
No 105
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=34.40 E-value=29 Score=34.35 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=30.9
Q ss_pred cEEEEEec----C-----CCceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIAL----D-----HLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~----~-----~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.+|.++ + +.+|++|||..+..+...||+.|.+-.
T Consensus 155 ~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 155 AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 47788775 3 678999999999999999999999865
No 106
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=34.31 E-value=1.1e+02 Score=28.78 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=48.2
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcch----hhhhhccCCCeEEEeccccCCc
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSK----ELCKYFEPGNHVKVVSGTQAGA 292 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~----~LrK~F~~GDhVkVi~G~~~ge 292 (838)
...|..||.|++. .+..-.....-++++...+|-... -+.++++.. +..+++++|..|.|+. |.|+
T Consensus 59 e~tf~s~~kve~~--~ve~~~~qylY~dg~~~~fMD~et--yeq~~l~~~~~~gd~~~~l~e~~~v~v~~--~~g~ 128 (136)
T 1bkb_A 59 TLSLPVDAQVEVP--IIEKFTAQILSVSGDVIQLMDMRD--YKTIEVPMKYVEEEAKGRLAPGAEVEVWQ--ILDR 128 (136)
T ss_dssp EEEEETTSEEEEC--CCEEEEEEEEEECSSEEEEEETTT--CCEEEEEGGGBCHHHHTTCCTTCEEEEEE--ETTE
T ss_pred EEEEcCCCEeeec--eEEEEEEEEEEecCCEEEEEeCCC--CeEEEeccccchhHHHhhCCCCCEEEEEE--ECCE
Confidence 3579999999986 355556678888999999997644 345666655 5678999999988873 4444
No 107
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=34.24 E-value=2.2e+02 Score=30.96 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=54.6
Q ss_pred eCCCcEEEEEEEecceEEEEecCCCCCcEEEEEccccccccccCccccCCCCCeecCCCEEEEEcCCCCCc-----eeeE
Q 003225 346 LDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGK-----QGPV 420 (838)
Q Consensus 346 ld~~~vGvIv~ier~~~~VL~~~~~~g~v~~vk~~~I~~K~~~~~~a~D~~gn~i~~gd~Vki~~Gp~kG~-----~G~V 420 (838)
|++...|.|++..+..+.|.+. .|+++.|+.+. ++ ..+.+||.|.+.... .+. .|.|
T Consensus 44 ~~~~~~g~Vi~~~~~~~~v~~~---~g~~~~~~~r~---~~-----------~~~~vGD~V~~~~~~-~~~~~~~~~~~I 105 (358)
T 2rcn_A 44 FGEPAEGIVISRFGMHADVESA---DGEVHRCNIRR---TI-----------RSLVTGDRVVWRPGK-AAAEGVNVKGIV 105 (358)
T ss_dssp BCCCEEEEEEEEETTEEEEEET---TSCEEEEEECT---TC-----------CCCCBTCEEEEECBC--------CCEEE
T ss_pred ccCcceEEEEEEECCEEEEEeC---CCcEEEEEecC---CC-----------CCCCCCcEEEEEeCC-CccccccccceE
Confidence 4445689999999999999863 46666665432 11 138899999986432 122 2899
Q ss_pred EEEECC-EEEEEeCceeccccEEEEeCCceEEecc
Q 003225 421 EHIYRG-ILFIHDRHHLEHAGFICAKSSSCVVVGG 454 (838)
Q Consensus 421 khi~r~-~lFL~~~~~~En~Gifv~~a~~~~~~g~ 454 (838)
.+|.-- .+|.. +...+..-+++++...+.++-+
T Consensus 106 ~~i~~R~~~l~R-~~~~~~~~~i~anvD~v~iv~a 139 (358)
T 2rcn_A 106 EAVHERTSVLTR-PDFYDGVKPIAANIDQIVIVSA 139 (358)
T ss_dssp EEECCCSCEEEE-C-----CEEEEECCCEEEEEEE
T ss_pred eEEeCCcCcccC-cchhhHHHHHHhcCCEEEEEEe
Confidence 999954 45554 3322222356666666665533
No 108
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=33.60 E-value=1.6e+02 Score=29.21 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=53.6
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhhh--hhccCCCeEEEeccccCCceEEEEE
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELC--KYFEPGNHVKVVSGTQAGATGMVLK 298 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~Lr--K~F~~GDhVkVi~G~~~getGlVvk 298 (838)
...|+.||.|++.. +..-.....-+++|...+|-... -+.++++..+|- +++++|..|.|+. |. |-++.
T Consensus 51 e~tf~s~~kve~~~--ver~~~qylY~dgd~~~FMD~et--yeq~~l~~~~lgd~~~L~eg~~v~v~~--~~---g~~i~ 121 (184)
T 1ueb_A 51 ERTFNSGEKLEDIY--VETRELQYLYPEGEEMVFMDLET--YEQFAVPRSRVVGAEFFKEGMTALGDM--YE---GQPIK 121 (184)
T ss_dssp EEEEETTCEEEECC--EEEEEEEEEEEETTEEEEEETTT--CCEEEEEGGGBTTGGGCCTTCEEEEEE--ET---TEEEE
T ss_pred EEEECCCCEEEeee--EEEEEEEEEEeCCCEEEEeeCCC--ceeEEcCHHHcChhhhcCCCCEEEEEE--EC---CEEEE
Confidence 46899999999984 55556667888999988887533 567889887543 8899999988873 33 35777
Q ss_pred EeC
Q 003225 299 VEQ 301 (838)
Q Consensus 299 Ve~ 301 (838)
|+=
T Consensus 122 v~l 124 (184)
T 1ueb_A 122 VTP 124 (184)
T ss_dssp EEC
T ss_pred EEC
Confidence 773
No 109
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=33.33 E-value=0.49 Score=45.83 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=21.6
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCCe
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEEN 251 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~ 251 (838)
..|.+||.|+|++|-++|+.|.|++++++.
T Consensus 108 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k 137 (162)
T 2oug_A 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA 137 (162)
T ss_dssp -------CTTHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCCCCCEEEEcccCCCCcEEEEEEECCCC
Confidence 469999999999999999999999998774
No 110
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=32.85 E-value=2.6e+02 Score=26.19 Aligned_cols=82 Identities=11% Similarity=0.206 Sum_probs=55.6
Q ss_pred EEEEEEeCCCCeEEEEeccCCCCceEEecCCCceEcCC-------CCCCcEEEEcCC-C-CC---ceEEEEEEeCCCeEE
Q 003225 749 VGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPP-------RKTDKIKIMGGP-H-RG---ATGKLIGVDGTDGIV 816 (838)
Q Consensus 749 ~gvI~~V~~dg~~~V~l~~~~~g~~v~v~~~~Le~V~P-------~kgd~VkVi~G~-~-rG---~tG~LisiD~~dgiV 816 (838)
+|.|++|.+ ..|.|...+.- ...-++..+++-++.| +.||+|.|..=. + -. -.|+++.+-++-.+|
T Consensus 19 ~a~V~~v~~-d~~~V~f~n~w-~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg~f~~V 96 (128)
T 3h8z_A 19 KGFVKDVHE-DSVTIFFENNW-QSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVI 96 (128)
T ss_dssp EEEEEEECS-SEEEEEETTCT-TCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEeC-CcEEEEEcccc-CcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEeeCCEEEE
Confidence 799999965 77988885431 2356888888888765 689999998632 2 22 378999999888888
Q ss_pred EecC--CCceEEEecccc
Q 003225 817 KVDV--SLDVKILDMAIL 832 (838)
Q Consensus 817 k~d~--~~~~kil~~~~L 832 (838)
.-++ ..--.|+.+..|
T Consensus 97 ~y~~~~~~~~EiV~~~rl 114 (128)
T 3h8z_A 97 EYAACDATYNEIVTLERL 114 (128)
T ss_dssp EETTC----CEEECGGGE
T ss_pred EEcCCCCCcceEEehhhe
Confidence 8443 111335555544
No 111
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.25 E-value=33 Score=30.37 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=28.0
Q ss_pred EEEEEec-CCCceEEEEEecChHHHHHHHhcCccee
Q 003225 13 IRSVIAL-DHLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 13 I~Sv~~~-~~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
|.+|..+ .+.+||.|||-....+...||+.+.+..
T Consensus 53 v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 53 IRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred EeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4444444 3579999999999999999999998754
No 112
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.24 E-value=38 Score=30.99 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=29.3
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCcce
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI 46 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v 46 (838)
.|.+|..+.+ |||=|||-.+..+...|++.|-+-
T Consensus 53 ~v~~v~i~~~-rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 53 LVDALLMPPN-KPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp CEEEEECCTT-CSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CeEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCC
Confidence 4777777665 899999999999999999998873
No 113
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=32.14 E-value=26 Score=37.29 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=33.6
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCCe--EEEeeCCCCCCceeEEc--chhhhhhccCCCeEE
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEEN--VHIRPEMKGLPKTLAVN--SKELCKYFEPGNHVK 283 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~--V~i~~~~~~l~~~i~v~--~~~LrK~F~~GDhVk 283 (838)
-.-++||.| .|+|+.|..+. |.|.+....+-....|+ .+.+|++|++||.|.
T Consensus 123 YiP~vGDiV----------IG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ 178 (289)
T 2nn6_G 123 YVPVKGDHV----------IGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIY 178 (289)
T ss_dssp CCCCSSEEE----------EEEEEEEETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEE
T ss_pred CCCCCCCEE----------EEEEEEEeCcEEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEE
Confidence 345889988 58899999885 44444322210001122 367899999999875
No 114
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=31.85 E-value=74 Score=30.54 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=30.7
Q ss_pred cCCCCCEEEEecCcCCCceEEEEEEeCCC------CEEEEEEe
Q 003225 71 DLSRDTWVRMKIGNYKGDLAKVVDVDNVR------QRVTVKLI 107 (838)
Q Consensus 71 ~l~~G~~VRik~G~ykGDlaqV~~vd~~~------~~V~vkli 107 (838)
-+++|-.|-|..|.|+|-+|.|+.+-+++ +.+.|-=|
T Consensus 4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGI 46 (144)
T 4a18_N 4 FLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGV 46 (144)
T ss_dssp CCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEE
T ss_pred cccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEec
Confidence 47899999999999999999999987765 56666544
No 115
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=31.13 E-value=69 Score=28.80 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=20.1
Q ss_pred ccCCCCEEEEec---C---ccCCceeEEEEEeCC
Q 003225 223 HFMKGDAVIVIK---G---DLKNLKGWVEKVDEE 250 (838)
Q Consensus 223 ~F~~GD~V~V~~---G---el~~l~G~V~~V~~d 250 (838)
.|.+||.|+|-- | ..+..+|.|+++.+.
T Consensus 3 ~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~ 36 (98)
T 2ftc_K 3 EFYVGSILRVTTADPYASGKISQFLGICIQRSGR 36 (98)
T ss_pred ccCCCCEEEEEEEECCCceEeeeEEEEEEEEECC
Confidence 699999999853 2 234577888887654
No 116
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=30.80 E-value=78 Score=29.94 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=46.1
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEE--cch---hhhhhccCCCeEEEec
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAV--NSK---ELCKYFEPGNHVKVVS 286 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v--~~~---~LrK~F~~GDhVkVi~ 286 (838)
...|..||.|++. .+..-.....-++++...+|-... -+.+++ +.. +..+++++|..|.|+.
T Consensus 57 e~tf~s~~~ve~~--~ve~~~~qylY~dg~~~~fMD~et--yeq~~l~~~~~~lgd~~~~l~e~~~V~v~~ 123 (138)
T 1iz6_A 57 SIVKPTSAEVDVP--IIDKKTAQVIAITPDTVQIMDMET--YETFEVPIDTGVADEIRDQLKEGINVEYWE 123 (138)
T ss_dssp EEEEETTSEEEEE--CCEEEEEEEEEECSSEEEEECTTT--CCEEEEEHHHHBCGGGTTTCCTTCEEEEEE
T ss_pred EEEecCCCEEeec--eEEEEEEEEEEeCCCEEEEEeCCC--CceEEeeCCHHHHHHHHHhCCCCCEEEEEE
Confidence 3589999999997 355556678888999999996543 345666 654 4578899999988874
No 117
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=30.76 E-value=1.2e+02 Score=25.24 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=23.0
Q ss_pred eeEEEEEeCCeEEEeeCCCCCCceeEEcchhhh----hhccCCCeEEEe
Q 003225 241 KGWVEKVDEENVHIRPEMKGLPKTLAVNSKELC----KYFEPGNHVKVV 285 (838)
Q Consensus 241 ~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~Lr----K~F~~GDhVkVi 285 (838)
.|+|.+|.+.-+-+.-.. .-+=-++.+++. +.|++||.|+|.
T Consensus 10 ~G~V~~v~~~G~fV~l~~---~~~Gllh~sel~~~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 10 KGVVTRIEKYGAFINLNE---QVRGLLRPRDMISLRLENLNVGDEIIVQ 55 (80)
T ss_dssp EEEEEEEETTEEEEEEET---TEEEEECGGGCSSCCGGGCCTTCEEEEE
T ss_pred EEEEEEEeCCEEEEEECC---CCEEEEEHHHCCcccceeeCCCCEEEEE
Confidence 566777765532222110 112234555554 489999998764
No 118
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=30.60 E-value=30 Score=31.63 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=29.2
Q ss_pred cEEEEEecC---------CCceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIALD---------HLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~~---------~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.+|.++. ..+||+|||-.+..+...|++.|-+-.
T Consensus 51 ~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 51 AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 377776653 246999999999999999999998855
No 119
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=30.55 E-value=2.3e+02 Score=26.04 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=12.6
Q ss_pred hhhhhhccCCCeEEEe
Q 003225 270 KELCKYFEPGNHVKVV 285 (838)
Q Consensus 270 ~~LrK~F~~GDhVkVi 285 (838)
.++.++|++||.|+|.
T Consensus 46 ~~~~~~~~vGd~V~vk 61 (130)
T 2k4k_A 46 KDINEHLSVGDEVQVK 61 (130)
T ss_dssp SCGGGTCCTTCEEEEE
T ss_pred cCccccCCCCCEEEEE
Confidence 3566899999998764
No 120
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=30.46 E-value=24 Score=32.12 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=38.4
Q ss_pred EEEEEec-CCCceEEEEEecChHHHHHHHhcCccee--e--eeeeeeChhhhhhccc
Q 003225 13 IRSVIAL-DHLKNYIYIEADKEAHVKEACKGLRNIY--S--QKVMLVPIREMTDVLA 64 (838)
Q Consensus 13 I~Sv~~~-~~lkGyIyVEA~~~~~V~~ai~g~~~v~--~--~~~~~Vpi~Em~~~L~ 64 (838)
|.+|.+. ++.+||+|||-.+..+...|++.|-+-. | ......+.+.....+-
T Consensus 44 V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp 100 (114)
T 3s6e_A 44 VIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFP 100 (114)
T ss_dssp CSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCG
T ss_pred EEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCc
Confidence 5556554 4569999999999999999999998865 3 3456667666665543
No 121
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=30.45 E-value=72 Score=33.39 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=34.3
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhh
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKEL 272 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~L 272 (838)
.+.|++||.|++ .+..|.|++|.--..+++... ...+.+|-+.+
T Consensus 126 ~~pf~vGD~I~i-----~~~~G~V~~I~l~~T~i~t~d---~~~v~iPN~~l 169 (285)
T 3udc_A 126 EDQFSVGDYVTI-----NGISGTVEEIGLRVTKIRGFS---DGLHIIPNGEI 169 (285)
T ss_dssp TTSCCTTCEEEE-----TTEEEEEEEECSSEEEEEETT---TEEEEEEGGGC
T ss_pred hCCccCCCEEEE-----CCEEEEEEEeeeeEEEEecCC---CCEEEeccccc
Confidence 368999999998 367899999988877777643 35577887776
No 122
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.31 E-value=11 Score=43.11 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 003225 604 PMRDRAWNPY 613 (838)
Q Consensus 604 P~~~~aw~p~ 613 (838)
|...++|+|.
T Consensus 283 pgs~g~~~pg 292 (562)
T 3ghg_A 283 PGSTGNRNPG 292 (562)
T ss_dssp ----------
T ss_pred CCcccCCCCC
Confidence 4444455543
No 123
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=30.14 E-value=83 Score=30.79 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=30.4
Q ss_pred ccCCCCEEEEecCccCCceeEEEEEeCC--eEEEee---CCCCCCceeE--Ec--------chhhhhhccCCCeEEE
Q 003225 223 HFMKGDAVIVIKGDLKNLKGWVEKVDEE--NVHIRP---EMKGLPKTLA--VN--------SKELCKYFEPGNHVKV 284 (838)
Q Consensus 223 ~F~~GD~V~V~~Gel~~l~G~V~~V~~d--~V~i~~---~~~~l~~~i~--v~--------~~~LrK~F~~GDhVkV 284 (838)
..+ ||.| .|+|++|.+. .|.|.+ ....+...++ ++ .++++++|++||.|++
T Consensus 55 ~p~-GdiV----------~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~a 120 (179)
T 3m7n_A 55 IVK-GDVV----------LGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKA 120 (179)
T ss_dssp CCT-TCEE----------EEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEE
T ss_pred cCC-CCEE----------EEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEE
Confidence 346 8887 5788888776 455555 1111111111 22 2477889999998754
No 124
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.61 E-value=43 Score=29.54 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=26.3
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcC
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGL 43 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~ 43 (838)
.|.+|..... |||-|||.....+...||+.+
T Consensus 41 ~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l 71 (101)
T 2cq1_A 41 KVTNILMLKG-KNQAFLELATEEAAITMVNYY 71 (101)
T ss_dssp CEEEEEEETT-TTEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEEECC-CCEEEEEECCHHHHHHHHHHh
Confidence 3777777665 999999999999999999865
No 125
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.95 E-value=12 Score=42.81 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q 003225 604 PMRDRAWNPYTPM 616 (838)
Q Consensus 604 P~~~~aw~p~~p~ 616 (838)
|..++.|+|-.+.
T Consensus 296 ~gs~g~w~~gs~~ 308 (562)
T 3ghg_A 296 TGGTATWKPGSSG 308 (562)
T ss_dssp -------------
T ss_pred CCCCCccCCCCCC
Confidence 4445667665444
No 126
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.92 E-value=2.4e+02 Score=24.74 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=16.9
Q ss_pred hhhhhhccCCCeEEEeccccCCceEEEEEEeCc
Q 003225 270 KELCKYFEPGNHVKVVSGTQAGATGMVLKVEQH 302 (838)
Q Consensus 270 ~~LrK~F~~GDhVkVi~G~~~getGlVvkVe~~ 302 (838)
+.+.+.|++||.|+|. |++++..
T Consensus 55 ~~~~~~~~~Gd~V~Vk----------V~~vd~~ 77 (103)
T 2eqs_A 55 ANVADVVSKGQRVKVK----------VLSFTGT 77 (103)
T ss_dssp CCHHHHCCTTCEEEEE----------EEEEETT
T ss_pred CCcccEeCCCCEEEEE----------EEEEECC
Confidence 3456889999998875 6677653
No 127
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=28.40 E-value=1.3e+02 Score=30.54 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=53.9
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhh---hhhccCCCeEEEeccccCCceEEEE
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKEL---CKYFEPGNHVKVVSGTQAGATGMVL 297 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~L---rK~F~~GDhVkVi~G~~~getGlVv 297 (838)
...|+.||.|++.. +..-.....-+++|...+|-... -+.++++...| .++.++|..|.|+- |+| -++
T Consensus 81 e~tf~s~ekve~a~--verr~~QylY~Dgd~y~FMD~ET--yEQi~l~~~~lgd~~~fLkEg~~v~v~~--~~g---~~i 151 (215)
T 1yby_A 81 EKTFNPTDKMPKAH--IERKDMQYLYNDGDLYYFMDTET--FEQLPLGKDKIGDALKFVKENEIVKVLS--HKG---NVF 151 (215)
T ss_dssp EEEECTTCEECBCC--CEEEEEEEEEEETTEEEEECTTT--CCEEEEEHHHHTTTTTTCCTTCEEEEEE--ETT---EEE
T ss_pred EEEECCCCEEecce--EEEEEEEEEEeCCCEEEEccCCC--CeeEEecHHHhhhHHhhCCCCCEEEEEE--ECC---EEE
Confidence 36899999998874 45556678888999998886533 56789998855 57789999988873 443 567
Q ss_pred EEeC
Q 003225 298 KVEQ 301 (838)
Q Consensus 298 kVe~ 301 (838)
.|+=
T Consensus 152 ~vel 155 (215)
T 1yby_A 152 GIEP 155 (215)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7773
No 128
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=27.89 E-value=1.4e+02 Score=30.46 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=48.7
Q ss_pred EEEEEEeCCCCeEEEEecc--CCCCceEEecCCC---ceEcCCCCCCcEEEEcCCCCCceEEEEEEeCC----CeEEEec
Q 003225 749 VGVIREVLPDGSCRVVLGS--SGNGDTITALPNE---IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGT----DGIVKVD 819 (838)
Q Consensus 749 ~gvI~~V~~dg~~~V~l~~--~~~g~~v~v~~~~---Le~V~P~kgd~VkVi~G~~rG~tG~LisiD~~----dgiVk~d 819 (838)
+|+..=++-||..-.+ +| -..+|++.++-.. ++.+.=..|..+.|+.|.+.|.+|++..|.-. .-+|.+.
T Consensus 98 ~G~~~l~~HDGrti~~-pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~ 176 (213)
T 3kbg_A 98 GNRIQLGTHDGRTFIT-DDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ 176 (213)
T ss_dssp GGEEEEEETTSCEEEE-CCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET
T ss_pred CCeeEEEecCccEEEc-CCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE
Confidence 4555555566776444 22 1125777776544 56677789999999999999999999999853 2466664
No 129
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=27.87 E-value=59 Score=33.77 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=31.4
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeC--CCCCC--cee---EEcc-hhhhhhccCCCeEEE
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPE--MKGLP--KTL---AVNS-KELCKYFEPGNHVKV 284 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~--~~~l~--~~i---~v~~-~~LrK~F~~GDhVkV 284 (838)
-..++||.|+ |+|++|..+.+.+.-. ..++- .++ .+.. .+++++|++||.|++
T Consensus 70 y~p~~GDiV~----------G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~a 130 (251)
T 2je6_I 70 YYPKINDIVI----------GLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIA 130 (251)
T ss_dssp CCCCTTCEEE----------EEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEE
T ss_pred cCCCCCCEEE----------EEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEE
Confidence 3568999984 7788887775444432 11110 000 0111 667779999999865
No 130
>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} SCOP: b.34.4.2 PDB: 1pse_A 1psf_A
Probab=27.82 E-value=13 Score=31.28 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.7
Q ss_pred CCCCCEEEEec--CcCCCceEEEEEEeCCCC
Q 003225 72 LSRDTWVRMKI--GNYKGDLAKVVDVDNVRQ 100 (838)
Q Consensus 72 l~~G~~VRik~--G~ykGDlaqV~~vd~~~~ 100 (838)
++.|+.|||+| --.=+|.|.|..||.++-
T Consensus 2 i~RGskVrIlR~ESYWyn~vGtVasVD~sgi 32 (73)
T 1gxi_E 2 LNRGDKVRIKRTESYWYGDVGTVASVEKSGI 32 (73)
T ss_dssp CCTTCCEEECCSSSTTTTEEECBCCTTTCCS
T ss_pred ccCCCEEEEccccceeecCcceEEEEcCCCC
Confidence 68899999998 356799999999998753
No 131
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=27.48 E-value=84 Score=30.18 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=22.9
Q ss_pred ccccCCCCEEEE----ecCc---cCCceeEEEEEeCC
Q 003225 221 KGHFMKGDAVIV----IKGD---LKNLKGWVEKVDEE 250 (838)
Q Consensus 221 ~~~F~~GD~V~V----~~Ge---l~~l~G~V~~V~~d 250 (838)
-..|.+||.|+| .+|+ .....|.|+++.+.
T Consensus 19 iP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~ 55 (146)
T 3v2d_T 19 LPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN 55 (146)
T ss_dssp CCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred CCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC
Confidence 468999999987 3564 34678999998754
No 132
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=27.10 E-value=36 Score=32.45 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=29.9
Q ss_pred hhhhccCCCeEEEeccccCCceEEEEEEeCcEEEEE
Q 003225 272 LCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIIL 307 (838)
Q Consensus 272 LrK~F~~GDhVkVi~G~~~getGlVvkVe~~~v~vl 307 (838)
..++.++|--|.+..|+|+|.-.+||.|-++..+++
T Consensus 11 f~rfve~GrVV~i~~Gr~aGk~avIV~iiD~~rVLV 46 (138)
T 3izc_N 11 NWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLI 46 (138)
T ss_dssp CCCCSSTTEEEECCSCSSSCCEEEEEEECSSSEEEE
T ss_pred hhhhcccCeEEEEeeCCCCCCEEEEEEEecCCEEEE
Confidence 367789999999999999999999999965544444
No 133
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=26.90 E-value=63 Score=31.37 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=38.0
Q ss_pred CCCCEEEEec----CccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhhhhh
Q 003225 225 MKGDAVIVIK----GDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKY 275 (838)
Q Consensus 225 ~~GD~V~V~~----Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~LrK~ 275 (838)
..|-.|+|.- ...+..+|++.+++++.|+|..+.+.-.++++++-+++.|+
T Consensus 102 ~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~v~l~~~~k~~~~~~~i~~~~I~ka 156 (164)
T 1ib8_A 102 AVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKKTVQIPYSLVSKA 156 (164)
T ss_dssp HCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSSCEEEEEECSSCCSSC
T ss_pred hCCcEEEEEEecccCCceEEEEEEEEEeCCEEEEEEecccCCeEEEEEHHHCcEE
Confidence 4788999864 34578899999999999999865422235677887777764
No 134
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=26.61 E-value=81 Score=27.83 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=32.1
Q ss_pred CceeEEEEEeCC-eEEEeeC----CCCCCc----eeEEcchhhhhhccCCCeEEEecc
Q 003225 239 NLKGWVEKVDEE-NVHIRPE----MKGLPK----TLAVNSKELCKYFEPGNHVKVVSG 287 (838)
Q Consensus 239 ~l~G~V~~V~~d-~V~i~~~----~~~l~~----~i~v~~~~LrK~F~~GDhVkVi~G 287 (838)
-++|.|+|-..| +|++..+ |.-+.. .=.+.+.|=...+++||.|++...
T Consensus 4 ~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~ 61 (89)
T 1qd7_I 4 VYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMET 61 (89)
T ss_pred EEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeCCccCCCCCCEEEEEEc
Confidence 478999998766 6666655 332222 224555555557899999988855
No 135
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=26.49 E-value=99 Score=29.80 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=22.2
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEe
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVD 248 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~ 248 (838)
+-.|++||+|+|- ++...+=.|+...
T Consensus 61 ~LeLRiGD~VKVd--~vpK~~hiVvGf~ 86 (153)
T 2fhd_A 61 RFFLKKGDVVQST--RLGKIKHTVVKTF 86 (153)
T ss_dssp ESCCCTTCEEEET--TSTTCCEEEEEEE
T ss_pred eeeeecCCEEEEC--CCCCccEEEEEec
Confidence 4689999999999 7888888888776
No 136
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=26.23 E-value=39 Score=35.51 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=40.1
Q ss_pred ecCCCEEEEEcCCCCCceeeEEEEECC---EEEEEeCceeccccEEEEeCCceEEecc
Q 003225 400 VAVKDVVRIVEGPCKGKQGPVEHIYRG---ILFIHDRHHLEHAGFICAKSSSCVVVGG 454 (838)
Q Consensus 400 i~~gd~Vki~~Gp~kG~~G~Vkhi~r~---~lFL~~~~~~En~Gifv~~a~~~~~~g~ 454 (838)
+..|..|.|+.|.+-|+.|+|.||-+. +--+|-++ +++--|.++..|+.++|.
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd--~~g~~F~T~~~nvfvIGk 230 (261)
T 3u5c_E 175 FDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKD--SLDNTFVTRLNNVFVIGE 230 (261)
T ss_dssp CCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEEC--TTSCEEEEEGGGEEECCS
T ss_pred ccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEE--CCCCeEEEEeCeEEEEcc
Confidence 356789999999999999999999872 32333222 234479999999999985
No 137
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=26.17 E-value=1.6e+02 Score=25.37 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=40.1
Q ss_pred ccCCceeEEEEEe-CCeEEEeeCCCCCCceeEEcchhhhhh---ccCCCeEEEeccccCCceEEEE
Q 003225 236 DLKNLKGWVEKVD-EENVHIRPEMKGLPKTLAVNSKELCKY---FEPGNHVKVVSGTQAGATGMVL 297 (838)
Q Consensus 236 el~~l~G~V~~V~-~d~V~i~~~~~~l~~~i~v~~~~LrK~---F~~GDhVkVi~G~~~getGlVv 297 (838)
|+.-+.|+|++.- ++...+.++.. ..-+---+--+||. ..+||.|.|---.|+.+.|-|+
T Consensus 12 ~~ie~~G~Vik~l~n~~f~V~l~nG--~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 12 GAIEVEGRVVEPLPNAMFRIELENG--HKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp CCSEEEEEEEEEETTTEEEEEETTS--CEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEEEEEEcCCCEEEEEeCCC--CEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 3455679999987 66777776532 12222334456663 5899999998777887788775
No 138
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=25.79 E-value=72 Score=26.11 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=29.2
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.++....+ +||-|||-.+..++..|+ .+.+..
T Consensus 43 ~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 43 PVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp SEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 6888877655 999999999999999999 887754
No 139
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.71 E-value=60 Score=27.58 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred EEEEEeCCCCeEEEEeccCCCCceEEecCCCceEcCCCCCC
Q 003225 750 GVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTD 790 (838)
Q Consensus 750 gvI~~V~~dg~~~V~l~~~~~g~~v~v~~~~Le~V~P~kgd 790 (838)
|.|.+|.++++|.|...|. ...+|..++|.++.++...
T Consensus 28 A~I~~v~~~~~~~V~f~Dy---n~e~v~~~~lrplp~~~k~ 65 (74)
T 2equ_A 28 AKIEAINKEGTFTVQFYDG---VIRCLKRMHIKAMPEDAKG 65 (74)
T ss_dssp EEEEEESTTSSEEEEETTS---CEEEECGGGEECCCGGGTC
T ss_pred EEEEEECCCCEEEEEEecC---CeEEecHHHCeeCChhHhh
No 140
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.57 E-value=52 Score=27.88 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=28.3
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCcce
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI 46 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v 46 (838)
.|.++....+ +||-|||-.+..++..||+.+.+.
T Consensus 43 ~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~ 76 (97)
T 1why_A 43 SIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGF 76 (97)
T ss_dssp CEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTC
T ss_pred CeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCC
Confidence 3777777666 999999999999999999877653
No 141
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=25.42 E-value=43 Score=29.85 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=28.5
Q ss_pred hccCCCeEEEeccccCCceEEEEEEeCcEEEEEeCC
Q 003225 275 YFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDT 310 (838)
Q Consensus 275 ~F~~GDhVkVi~G~~~getGlVvkVe~~~v~vlSD~ 310 (838)
.+++|--|.+.+|+|+|.--+|+++-++...++.|-
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp 38 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGP 38 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECC
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECC
Confidence 468999999999999999999999944444445453
No 142
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=25.40 E-value=1e+02 Score=28.37 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEe----cCc---cCCceeEEEEEeCC----eEEEee
Q 003225 221 KGHFMKGDAVIVI----KGD---LKNLKGWVEKVDEE----NVHIRP 256 (838)
Q Consensus 221 ~~~F~~GD~V~V~----~Ge---l~~l~G~V~~V~~d----~V~i~~ 256 (838)
-..|.+||.|+|. +|+ .+...|.|+++.+. ++|+.-
T Consensus 16 iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRk 62 (114)
T 3r8s_P 16 VPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRK 62 (114)
T ss_dssp CCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEE
T ss_pred CCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEE
Confidence 4689999999874 564 34778999998754 455543
No 143
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=25.21 E-value=93 Score=28.30 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=33.4
Q ss_pred CCceeEEEEEeCC-eEEEeeC----CCCCCce----eEEcchhhhhhccCCCeEEEecc
Q 003225 238 KNLKGWVEKVDEE-NVHIRPE----MKGLPKT----LAVNSKELCKYFEPGNHVKVVSG 287 (838)
Q Consensus 238 ~~l~G~V~~V~~d-~V~i~~~----~~~l~~~----i~v~~~~LrK~F~~GDhVkVi~G 287 (838)
+-++|.|+|-..+ +|+|..+ |.-+..- =.+.+.|=...+++||.|.+...
T Consensus 4 k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~ 62 (105)
T 2vqe_Q 4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIES 62 (105)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEE
T ss_pred eEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEECCCCCCCCCCEEEEEEc
Confidence 3478999999766 6777655 3333322 24566665567899999998754
No 144
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.98 E-value=58 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=26.2
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcC
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGL 43 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~ 43 (838)
.|.+|....+ |||=|||-....+...|++.+
T Consensus 41 ~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 41 TICYVMMMPF-KRQALVEFENIDSAKECVTFA 71 (104)
T ss_dssp CEEEEEEETT-TTEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEEECC-CCEEEEEECCHHHHHHHHHHh
Confidence 4777776654 999999999999999999865
No 145
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=24.45 E-value=90 Score=24.30 Aligned_cols=49 Identities=14% Similarity=0.075 Sum_probs=34.2
Q ss_pred ccCCCCEEEEe-cCccCCceeEEEEEeC--CeEEEeeCCCCCCceeEEcchhhh
Q 003225 223 HFMKGDAVIVI-KGDLKNLKGWVEKVDE--ENVHIRPEMKGLPKTLAVNSKELC 273 (838)
Q Consensus 223 ~F~~GD~V~V~-~Gel~~l~G~V~~V~~--d~V~i~~~~~~l~~~i~v~~~~Lr 273 (838)
.|++||.+... ..|-.=-.++|++|.. +.++|.=. |..+.-+|+.++||
T Consensus 1 ~wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fv--DYGn~e~v~~~~lr 52 (54)
T 3s6w_A 1 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFI--DYGNYEEVLLSNIK 52 (54)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEET--TTCCEEEEEGGGEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEE--ccCCeEEEeHHHEE
Confidence 47899999887 4666778899999964 45655533 44455667888876
No 146
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=24.09 E-value=1.1e+02 Score=26.32 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=21.5
Q ss_pred cccccCCCCEEEEecCccCCceeEEEEE
Q 003225 220 KKGHFMKGDAVIVIKGDLKNLKGWVEKV 247 (838)
Q Consensus 220 ~~~~F~~GD~V~V~~Gel~~l~G~V~~V 247 (838)
.+..|.+||.||++.-+-.+..-.|..+
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m 53 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKI 53 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHe
Confidence 3578999999999988766666666555
No 147
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.99 E-value=65 Score=28.91 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=26.4
Q ss_pred EEEEEecCCCceEEEEEecChHHHHHHHhcCc
Q 003225 13 IRSVIALDHLKNYIYIEADKEAHVKEACKGLR 44 (838)
Q Consensus 13 I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~ 44 (838)
|.+|..... |||=|||.....+...||+.+.
T Consensus 43 V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 43 VTNLLMLKG-KNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp EEEEEEETT-TTEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEEEcC-CCEEEEEECCHHHHHHHHHHhc
Confidence 777776655 9999999999999999999664
No 148
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=23.90 E-value=62 Score=29.21 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=32.5
Q ss_pred eeeeChhhhhhccccccccccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEEee
Q 003225 51 VMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIP 108 (838)
Q Consensus 51 ~~~Vpi~Em~~~L~~~~~~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkliP 108 (838)
..+|++.||..--........+++||.|++ +|.++|..+.++.|.+.+
T Consensus 55 ~Glvhisel~~~~~~~~~~~~~~vGd~V~v----------kV~~vd~~~~rI~lslk~ 102 (115)
T 2khi_A 55 EGLVHVSEMDWTNKNIHPSKVVNVGDVVEV----------MVLDIDEERRRISLGLKQ 102 (115)
T ss_dssp EEEEETTSSSCSSTTCSSTTTCCTTCEEEE----------EEEEEETTTTEEEECCCC
T ss_pred EEEEEHHHCCccccccCcccEECCCCEEEE----------EEEEEECCCCEEEEEEEe
Confidence 367888887541122223346899999986 689999888877776544
No 149
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=23.75 E-value=64 Score=35.12 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.7
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCcce
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI 46 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v 46 (838)
.|.+|..+. -|||=|||..+.++.+.||+.|-+-
T Consensus 46 ~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 46 LVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp CEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 478887766 4999999999999999999999874
No 150
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.56 E-value=67 Score=27.87 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=29.0
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.+|..... +||-|||-.+..++..||+.+.+..
T Consensus 51 ~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~ 85 (109)
T 1x4g_A 51 QIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTT 85 (109)
T ss_dssp CEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 3777776665 9999999999999999998877643
No 151
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=23.53 E-value=1.7e+02 Score=23.11 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=37.6
Q ss_pred CCccCcEEEEecCCC--ccEEEEEEeCC-CCeEEEEeccCCCCceEEecCCCceEcCC
Q 003225 732 PWFMPDILVRRSGEE--SVVGVIREVLP-DGSCRVVLGSSGNGDTITALPNEIEIVPP 786 (838)
Q Consensus 732 ~W~~~~I~V~~~g~~--~~~gvI~~V~~-dg~~~V~l~~~~~g~~v~v~~~~Le~V~P 786 (838)
.|..-+++.-+-.+| =-.|+|.++.. ++.|.|...|- |....|..++|-+..|
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DY--Gn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGY--GNREEQNLSDLLSPIC 58 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTT--TEEEEEEGGGCBCTTC
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcC--CCEEEEcHHHeeCCCC
Confidence 365556665222222 33899999965 58999999998 6788888888887654
No 152
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=23.48 E-value=60 Score=31.16 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCeecCCCEEEEEcCCCCCceeeEEEEECC
Q 003225 397 KNTVAVKDVVRIVEGPCKGKQGPVEHIYRG 426 (838)
Q Consensus 397 gn~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~ 426 (838)
+.-+.+|-+|.+..|+|.|+.++|..++.+
T Consensus 2 ~kf~kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 2 AKFLKYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCCCCTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred CccccCCeEEEEecCCcCCCEEEEEEecCC
Confidence 456789999999999999999999988763
No 153
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=23.44 E-value=91 Score=30.36 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.0
Q ss_pred CCceeEEEeecCCeEEEEeccCce
Q 003225 519 KGYRGRVVDVKGQSVRVELESQMK 542 (838)
Q Consensus 519 KG~~G~Vkdat~~~~rVELhs~~k 542 (838)
+|+.|+|.++...++||.|=+...
T Consensus 45 ~GlVG~V~~V~~~~S~V~Litd~~ 68 (172)
T 2qf4_A 45 GGLIGSVSKVEENSTIVNLLTNTE 68 (172)
T ss_dssp TEEEEEEEEECSSCEEEEETTCSB
T ss_pred CCcEEEEEEECCCeEEEEEEECCC
Confidence 589999999999999999966554
No 154
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=23.03 E-value=92 Score=29.79 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=33.1
Q ss_pred CCceeEEEEEeCC-eEEEeeC----CCCCCcee----EEcchhhhhhccCCCeEEEecc
Q 003225 238 KNLKGWVEKVDEE-NVHIRPE----MKGLPKTL----AVNSKELCKYFEPGNHVKVVSG 287 (838)
Q Consensus 238 ~~l~G~V~~V~~d-~V~i~~~----~~~l~~~i----~v~~~~LrK~F~~GDhVkVi~G 287 (838)
+-++|+|++-..| +|+|..+ |.-++..+ .+.+.|=....++||.|++...
T Consensus 61 k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHDe~n~~kvGD~V~I~E~ 119 (142)
T 3bbn_Q 61 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 119 (142)
T ss_dssp CEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEECTTCCCCTTEEEEEEEC
T ss_pred EEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEECCCCCCCCCCEEEEEEc
Confidence 3478999998666 6766655 33333322 4566665557899999988755
No 155
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.73 E-value=71 Score=26.62 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=26.9
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCcce
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI 46 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v 46 (838)
.|.++... +||-|||-.+..++..||+.+.+.
T Consensus 34 ~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 34 KVLECDII---KNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp CEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCC
Confidence 46666665 899999999999999999887764
No 156
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=22.72 E-value=92 Score=32.63 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=35.3
Q ss_pred ccccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhhh
Q 003225 221 KGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELC 273 (838)
Q Consensus 221 ~~~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~Lr 273 (838)
.+.|++||.|++ .+..|.|++|.--..+++... .+.+.+|-+.|-
T Consensus 127 ~~pf~vGD~I~i-----~g~~G~V~~I~l~~T~i~t~d---g~~v~IPNs~l~ 171 (286)
T 2vv5_A 127 FRPFRAGEYVDL-----GGVAGTVLSVQIFSTTMRTAD---GKIIVIPNGKII 171 (286)
T ss_dssp TCSSCTTCEEES-----SSCEEEEEEECSSEEEEECTT---SCEEEEEHHHHH
T ss_pred cCCccCCCEEEE-----CCEEEEEEEEEeEEEEEEeCC---CCEEEechHHHh
Confidence 468999999987 368999999998887777532 356788877775
No 157
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=22.51 E-value=1.2e+02 Score=27.14 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=39.1
Q ss_pred CCccccCcEEEEeecCCCC-ceeEEEeecCCeEEEE--------eccCceEEEEecccccc
Q 003225 502 GHDALVGTTVKVRLGPYKG-YRGRVVDVKGQSVRVE--------LESQMKVVTVDRSMISD 553 (838)
Q Consensus 502 ~rd~liGktV~I~~GpyKG-~~G~Vkdat~~~~rVE--------Lhs~~k~I~V~r~~l~~ 553 (838)
.+.++||+.|.|.=|.-=| |.|.|++++.+++.+. |..++--|++...+|..
T Consensus 6 ~~edwiG~~VSI~C~d~LGVyQG~I~~V~~~~ItL~kaFrNGiplk~~~~EVtLsa~DI~~ 66 (103)
T 2rm4_A 6 TDQDWIGCAVSIACDEVLGVFQGLIKQISAEEITIVRAFRNGVPLRKQNAEVVLKCTDIRS 66 (103)
T ss_dssp CSGGGTTCEEEEEECTTTCEEEEEEEEEETTEEEEEEEEETTEECSCSSSCEEEETTTEEE
T ss_pred cccceeceEEEEeeCCcceEeeEEEEEcccceeEEhhhhhcCcCcCCCCceEEEEecchhh
Confidence 3569999999999999774 8999999998876543 34444557776666653
No 158
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.31 E-value=3.4e+02 Score=25.87 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=47.0
Q ss_pred cceEEe-CCCcEEEEEEEecce-EEEEecCCCCCcEEEEEccccccccccCccccCCCCCeecCCCEEEEEcCCCCCcee
Q 003225 341 RDLVLL-DNNSFGVIIRVESEA-FQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQG 418 (838)
Q Consensus 341 ~DLVql-d~~~vGvIv~ier~~-~~VL~~~~~~g~v~~vk~~~I~~K~~~~~~a~D~~gn~i~~gd~Vki~~Gp~kG~~G 418 (838)
.+|+.. +.+-.|+|+.+-.+. |.|... +|..+.+... .|+.+ .==|..||.|.|---||.--.|
T Consensus 23 ~el~~p~ege~~g~V~e~lgn~~f~V~l~---nG~~~La~I~---GKmRk--------~IwI~~GD~VlVe~~~yd~~KG 88 (143)
T 1d7q_A 23 RELVFKEDGQEYAQVIKMLGNGRLEAMCF---DGVKRLCHIR---GKLRK--------KVWINTSDIILVGLRDYQDNKA 88 (143)
T ss_dssp CCCCCCCTTEEEEEEEEECSSSEEEEEET---TTEEEEEECC---SGGGG--------SCCCCTTCEEEEECSSSSSSCC
T ss_pred hcccCCCCCEEEEEEEEEcCCCEEEEEeC---CCCEEEEEec---cccee--------eEEecCCCEEEEeeccCCCCeE
Confidence 344443 345789999998664 777773 5766666533 33221 1157889999998778865668
Q ss_pred eEEEEEC
Q 003225 419 PVEHIYR 425 (838)
Q Consensus 419 ~Vkhi~r 425 (838)
.|.|.|.
T Consensus 89 ~Ii~r~~ 95 (143)
T 1d7q_A 89 DVILKYN 95 (143)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8887774
No 159
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=22.02 E-value=66 Score=29.53 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=38.4
Q ss_pred CEEEEEcCCCCCc-eeeEEEEECCEEEEEeCceecc-ccEEEEeCCceEEeccc
Q 003225 404 DVVRIVEGPCKGK-QGPVEHIYRGILFIHDRHHLEH-AGFICAKSSSCVVVGGS 455 (838)
Q Consensus 404 d~Vki~~Gp~kG~-~G~Vkhi~r~~lFL~~~~~~En-~Gifv~~a~~~~~~g~~ 455 (838)
.+.+|..|-|=|+ .|.|..|..+.+.|. +.+.+ .|-++.|...+.|.+++
T Consensus 52 ~vyrVk~G~ylG~n~GrI~~It~~~I~l~--E~v~Dg~G~W~eR~~~L~L~~~~ 103 (111)
T 2lc4_A 52 GVHRVRVGDYLGRNDGKVVGISEGKIDVI--EIVPDGEGNWLERPRSLTLKERS 103 (111)
T ss_dssp EEEEEETTCEETTTTEEEEEECSSEEEEE--EEEECSSSCEEEEEEEEEBCCSC
T ss_pred cEEEEccCCEeccCCCEEEEEeCCeEEEE--EEEECCCCCEEEeeeEEEeCCCc
Confidence 3556666777777 599999999998884 55444 69999999999986653
No 160
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=21.90 E-value=5e+02 Score=25.67 Aligned_cols=101 Identities=10% Similarity=0.148 Sum_probs=0.0
Q ss_pred hhhhcccccccCCCCEEEE---------ecCcc----CCceeEEEEE--eCCeEEEeeCCCCCCceeEEcchhhhhhccC
Q 003225 214 TLFANRKKGHFMKGDAVIV---------IKGDL----KNLKGWVEKV--DEENVHIRPEMKGLPKTLAVNSKELCKYFEP 278 (838)
Q Consensus 214 ~~~~~~~~~~F~~GD~V~V---------~~Gel----~~l~G~V~~V--~~d~V~i~~~~~~l~~~i~v~~~~LrK~F~~ 278 (838)
++++..+-..+++||.|=+ +.|-+ .+-+|.|+++ +++...+. |+++ ++|.||..+
T Consensus 65 ETl~~T~Lg~l~~G~~VNLEral~~~~rlgGH~vsGHVdg~g~i~~i~~~~~~~~~~---------i~~p-~~l~~~i~~ 134 (186)
T 3ddy_A 65 QALGTTTFDGLKEGDQVNLEIHPKFGEVVGRGGLTGNIKGTALVAAIEENDAGFSVL---------IDIP-KGLAENLTV 134 (186)
T ss_dssp TTTTTSSGGGCCTTCEEEEECCC---------CBCSCCCEEEEEEEEECCSSEEEEE---------EECC-TTTCSCCCT
T ss_pred HhhhhCchhhcCCCCEEEECCCCCCCCccCCeeEEEEEeEEEEEEEEEECCCeEEEE---------EEcC-HHHhhcccc
Q ss_pred CCeEEEeccccCCceEEEEEEeCcEEEEEeCCCCCeEEEcccccccccccccccccCCceEecceEEe
Q 003225 279 GNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLL 346 (838)
Q Consensus 279 GDhVkVi~G~~~getGlVvkVe~~~v~vlSD~t~~ei~V~~~dL~~~~e~~~g~d~~g~y~l~DLVql 346 (838)
+..|-| .|-+=.|..++++.+.|. +-|.-|+... ++.++.+|.|-|
T Consensus 135 KgSIav-----dGvSLTV~~v~~~~f~v~---------lIp~Tl~~T~--------l~~~~~Gd~VNl 180 (186)
T 3ddy_A 135 KDDIGI-----DGISLPITDMSDSIITLN---------YSRDLLASTN--------IASLAKDVKVNV 180 (186)
T ss_dssp TCEEEE-----TTEEEECCEEETTEEEEE---------EEGGGGGTSS--------GGGCCTTCEEEE
T ss_pred CcEEEE-----EeEEEEEEeecCCEEEEE---------EcHHHHhhcc--------cccCccCCEEEE
No 161
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.79 E-value=96 Score=26.90 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=28.3
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.+|..... ||-|||-.+..++..||+.+.+..
T Consensus 41 ~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~ 74 (108)
T 1x4c_A 41 DVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 74 (108)
T ss_dssp CEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEE
T ss_pred CEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCC
Confidence 4777776555 999999999999999999887743
No 162
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=21.78 E-value=1.9e+02 Score=24.11 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred ccCCCCEEEEecCccCCceeEEEEEeCC-eEEEeeCCCCCCceeEEcchhhhh
Q 003225 223 HFMKGDAVIVIKGDLKNLKGWVEKVDEE-NVHIRPEMKGLPKTLAVNSKELCK 274 (838)
Q Consensus 223 ~F~~GD~V~V~~Gel~~l~G~V~~V~~d-~V~i~~~~~~l~~~i~v~~~~LrK 274 (838)
.|++||.|...=||-.---++|++|.++ +.+|.=+. ...-+|.+++|+.
T Consensus 6 ~~~vGd~vmArW~D~~yYpA~I~si~~~~~Y~V~F~d---G~~etvk~~~ikp 55 (67)
T 3p8d_A 6 EFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYD---GVVQTVKHIHVKA 55 (67)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTTSEEEEEETT---SCEEEEEGGGEEE
T ss_pred ccccCCEEEEEcCCCCEeeEEEEEECCCCeEEEEEeC---CceEEEeHHHccc
No 163
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=21.76 E-value=45 Score=32.87 Aligned_cols=50 Identities=18% Similarity=0.064 Sum_probs=30.6
Q ss_pred cCCCCEEEEecCccCCceeEEEEEeCCe--EEEee-CCCCCCceeEEc--chhhhhhccCCCeEE
Q 003225 224 FMKGDAVIVIKGDLKNLKGWVEKVDEEN--VHIRP-EMKGLPKTLAVN--SKELCKYFEPGNHVK 283 (838)
Q Consensus 224 F~~GD~V~V~~Gel~~l~G~V~~V~~d~--V~i~~-~~~~l~~~i~v~--~~~LrK~F~~GDhVk 283 (838)
-++||.| .|.|+.+.++. |.|-+ ....+-.-..|+ .+..|+.|++||.|.
T Consensus 5 P~~gDvV----------iG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ 59 (175)
T 2ja9_A 5 PSVNDFV----------IGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVY 59 (175)
T ss_dssp CCTTCEE----------EEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEE
T ss_pred CCCcCEE----------EEEEEEEECcEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEE
Confidence 4678887 48888888884 44444 222110001122 477899999999875
No 164
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=21.09 E-value=2.1e+02 Score=24.59 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=30.9
Q ss_pred EEEEEEeCCCCeEEEEeccCCCCceEEecCCCceEcCC
Q 003225 749 VGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPP 786 (838)
Q Consensus 749 ~gvI~~V~~dg~~~V~l~~~~~g~~v~v~~~~Le~V~P 786 (838)
.|.|.++.+++.|.|.+.|. |....|..++|-+..+
T Consensus 46 RA~I~~~~~~~~~~V~fvDy--Gn~e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 46 RARVLGTLENGNLDLYFVDF--GDNGDCPLKDLRALRS 81 (94)
T ss_dssp EEEEEEECTTSCEEEEETTT--CCEEEECGGGCEECCG
T ss_pred EEEEEEECCCCeEEEEEEcC--CCeEEEEHHHhhhcCH
Confidence 78899997778999999999 6889999988887654
No 165
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=21.08 E-value=1.9e+02 Score=27.03 Aligned_cols=75 Identities=19% Similarity=0.128 Sum_probs=0.0
Q ss_pred cccCCCCEEEEec--Ccc------------CCceeEEEEEeCC---eEEEeeCCCCCCce------eEEcchhhhhhccC
Q 003225 222 GHFMKGDAVIVIK--GDL------------KNLKGWVEKVDEE---NVHIRPEMKGLPKT------LAVNSKELCKYFEP 278 (838)
Q Consensus 222 ~~F~~GD~V~V~~--Gel------------~~l~G~V~~V~~d---~V~i~~~~~~l~~~------i~v~~~~LrK~F~~ 278 (838)
..+++||.|.... |++ .......+.|..+ .+++.++|.=+... ..++|++|+ +
T Consensus 19 ~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~g~~L~lTp~H~i~v~~~~~~~~~~v~A~~l~----~ 94 (145)
T 1at0_A 19 GELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPESQKLTFVFADRIE----E 94 (145)
T ss_dssp GGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETTSCEEEECTTCEEEEEETTTTEEEEEEGGGCC----T
T ss_pred HHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECCCCEEEEeCCCEEEEecCCCCcEEEEEHHHCc----C
Q ss_pred CCeEEEecc-ccCCceEEEEEEe
Q 003225 279 GNHVKVVSG-TQAGATGMVLKVE 300 (838)
Q Consensus 279 GDhVkVi~G-~~~getGlVvkVe 300 (838)
||.|.+..| .-.-..-.|++|+
T Consensus 95 GD~v~~~~~~~~~~~~~~V~~v~ 117 (145)
T 1at0_A 95 KNQVLVRDVETGELRPQRVVKVG 117 (145)
T ss_dssp TCEEEEECTTTCCEEEEEEEEEE
T ss_pred CCEEEEecCCCCCEEEEEEEEEE
No 166
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=20.98 E-value=85 Score=26.84 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=27.6
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.++... +||-|||-.+..++..||+.+.+..
T Consensus 49 ~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (97)
T 2xnq_A 49 HIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEM 81 (97)
T ss_dssp CEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSE
T ss_pred CEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 37777663 8999999999999999999877654
No 167
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.91 E-value=1.5e+02 Score=26.57 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=36.3
Q ss_pred cccCCCCEEEEe------cC----ccCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhhh
Q 003225 222 GHFMKGDAVIVI------KG----DLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELC 273 (838)
Q Consensus 222 ~~F~~GD~V~V~------~G----el~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~Lr 273 (838)
..|++||.|-|. +| -+-+-+|.|.+|.+.-|.|.....++.+.|-|....|+
T Consensus 33 ~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn~~g~~Kri~vrieHik 94 (97)
T 3j21_R 33 QEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIKDGSKVKTLFIHPVHLR 94 (97)
T ss_dssp CCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETTEEEEEEECGGGEE
T ss_pred HHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEEeCCcceEEEECHHHcc
Confidence 579999999873 22 45678999999999976665544555555655555443
No 168
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.88 E-value=1.1e+02 Score=25.93 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=29.1
Q ss_pred cEEEEEecCCCceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.+|... .-+||-|||-....++..||+.+.+..
T Consensus 39 ~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~ 73 (97)
T 1x5p_A 39 NIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQ 73 (97)
T ss_dssp CEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 46777664 569999999999999999999888754
No 169
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=20.79 E-value=1.8e+02 Score=24.01 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=33.3
Q ss_pred ceeEEEEEeC-CeEEEeeCCCCCCceeE-Ecchhhhhh---ccCCCeEEEeccccCCceEEEE
Q 003225 240 LKGWVEKVDE-ENVHIRPEMKGLPKTLA-VNSKELCKY---FEPGNHVKVVSGTQAGATGMVL 297 (838)
Q Consensus 240 l~G~V~~V~~-d~V~i~~~~~~l~~~i~-v~~~~LrK~---F~~GDhVkVi~G~~~getGlVv 297 (838)
+.|+|++.-+ +...+..+.. ..+. --.--+||. ..+||.|.|---.|+.+.|.|+
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~~g---~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~ 67 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELENG---HVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp CCEEEEEECSSSEEEEEETTS---CEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEEEEEeCCcEEEEEECCC---CEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEE
Confidence 5799999988 5666655322 2222 223345543 3589999876445566677664
No 170
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.74 E-value=1.5e+02 Score=25.77 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=29.3
Q ss_pred cEEEEEecCC-----CceEEEEEecChHHHHHHHhcCccee
Q 003225 12 QIRSVIALDH-----LKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 12 ~I~Sv~~~~~-----lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
.|.+|....+ .+||-|||-.+..++..||+.+.+..
T Consensus 43 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~ 83 (116)
T 2cqd_A 43 DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPII 83 (116)
T ss_dssp CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEE
T ss_pred CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcC
Confidence 3777766543 58999999999999999999988744
No 171
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.71 E-value=95 Score=25.82 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=28.0
Q ss_pred EEEEEec-----CCCceEEEEEecChHHHHHHHhcCccee
Q 003225 13 IRSVIAL-----DHLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 13 I~Sv~~~-----~~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
|.++... ...+||-|||-.+..++..|++.+.+..
T Consensus 42 v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 42 IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp EEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred eeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 6666554 2458999999999999999999887754
No 172
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.66 E-value=1e+02 Score=32.04 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=51.1
Q ss_pred cEEEEEEeCCCCeEEEEecc----CCCCceEEecCCC---ceEcCCCCCCcEEEEcCCCCCceEEEEEEeC---C-CeEE
Q 003225 748 VVGVIREVLPDGSCRVVLGS----SGNGDTITALPNE---IEIVPPRKTDKIKIMGGPHRGATGKLIGVDG---T-DGIV 816 (838)
Q Consensus 748 ~~gvI~~V~~dg~~~V~l~~----~~~g~~v~v~~~~---Le~V~P~kgd~VkVi~G~~rG~tG~LisiD~---~-dgiV 816 (838)
++|++.=++-||..-.+-.+ -..+|++.++-.. ++.+.=..|..+.|+.|.+.|.+|++..|.- + .-+|
T Consensus 134 ~~G~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V 213 (243)
T 3j20_E 134 KGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVV 213 (243)
T ss_dssp TTTEEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEE
T ss_pred cCCeeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEE
Confidence 35666666667776444211 1125777777655 5667778999999999999999999999984 2 4567
Q ss_pred EecC
Q 003225 817 KVDV 820 (838)
Q Consensus 817 k~d~ 820 (838)
.+.+
T Consensus 214 ~v~d 217 (243)
T 3j20_E 214 TIED 217 (243)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6653
No 173
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=20.50 E-value=2.7e+02 Score=21.96 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=37.8
Q ss_pred cccCCCCEEEEe-cCccCCceeEEEEEeC--CeEEEeeCCCCCCceeEEcchhhhh
Q 003225 222 GHFMKGDAVIVI-KGDLKNLKGWVEKVDE--ENVHIRPEMKGLPKTLAVNSKELCK 274 (838)
Q Consensus 222 ~~F~~GD~V~V~-~Gel~~l~G~V~~V~~--d~V~i~~~~~~l~~~i~v~~~~LrK 274 (838)
+.|++||.+... ..|-.==.++|++|.. +.++|.=. |....-+|+.++||.
T Consensus 2 ~~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~--DYGn~e~v~~~~Lr~ 55 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYT--GYGNREEQNLSDLLS 55 (59)
T ss_dssp CCCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEET--TTTEEEEEEGGGCBC
T ss_pred CcCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEE--cCCCEEEEcHHHeeC
Confidence 468999999886 4566678899999985 56666643 445566788888875
No 174
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.40 E-value=77 Score=28.69 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=31.5
Q ss_pred eeeChhhhhhccccccccccCCCCCEEEEecCcCCCceEEEEEEeCCCCEEEEEEe
Q 003225 52 MLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLI 107 (838)
Q Consensus 52 ~~Vpi~Em~~~L~~~~~~~~l~~G~~VRik~G~ykGDlaqV~~vd~~~~~V~vkli 107 (838)
.+++.+++.+..+.......+++||.|++ +|.+||.++.++.|.+.
T Consensus 48 ~l~~~~~~~~~~~~~~~~~~~~~Gd~V~v----------kV~~vd~~~~~i~Lslk 93 (119)
T 1wi5_A 48 AFLPLLKAQEYIRQKNKGAKLKVGQYLNC----------IVEKVKGNGGVVSLSVG 93 (119)
T ss_dssp EEEEHHHHHHHHHHHSSSCCCCTTCEEEE----------EEEECCTTSCEEEEECC
T ss_pred EEEEEecccccccccCccCEeCCCCEEEE----------EEEEEeCCCCEEEEEEc
Confidence 56666666554443333456899999985 68899988887777654
No 175
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.39 E-value=1.8e+02 Score=23.71 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=38.1
Q ss_pred cccCCCCEEEEecCccCCceeEEEEEeCC--eEEEeeCCCCCCceeEEcchhhhhhccCC
Q 003225 222 GHFMKGDAVIVIKGDLKNLKGWVEKVDEE--NVHIRPEMKGLPKTLAVNSKELCKYFEPG 279 (838)
Q Consensus 222 ~~F~~GD~V~V~~Gel~~l~G~V~~V~~d--~V~i~~~~~~l~~~i~v~~~~LrK~F~~G 279 (838)
..|.+||.|-+.-=|=.---|+|++|+.. .-.|+=.. ..+.-+..++|++...+|
T Consensus 2 ~~f~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D---~s~~W~~~kdi~~~~~~~ 58 (58)
T 4hcz_A 2 PRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFED---DSQFLVLWKDISPAALPG 58 (58)
T ss_dssp CSCCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETT---SCEEEEEGGGEEECSCCC
T ss_pred CccccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcC---CCeEEEEhHHcccccCCC
Confidence 57999999999777767778999999876 33443221 234566777777765543
No 176
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=20.39 E-value=1.5e+02 Score=28.12 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=33.2
Q ss_pred ccCCCCEEEEecCccCCceeEEEEEeCCeEEEeeCCCCCCceeEEc
Q 003225 223 HFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVN 268 (838)
Q Consensus 223 ~F~~GD~V~V~~Gel~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~ 268 (838)
.+.+|+.+..-.-+-....|+|++|+++.|+|--.|.==.+.|.|.
T Consensus 93 ~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~ 138 (151)
T 2kr7_A 93 ELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFR 138 (151)
T ss_dssp CCCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEE
T ss_pred CCccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEE
Confidence 4677888876543323478999999999999999986324555554
No 177
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.33 E-value=1.1e+02 Score=24.87 Aligned_cols=33 Identities=12% Similarity=0.293 Sum_probs=27.2
Q ss_pred EEEEEecCCCceEEEEEecChHHHHHHHhcC-cce
Q 003225 13 IRSVIALDHLKNYIYIEADKEAHVKEACKGL-RNI 46 (838)
Q Consensus 13 I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~-~~v 46 (838)
|.++....+ +||-|||-.+..++..|++.+ .+.
T Consensus 39 i~~~~~~~~-kg~afV~f~~~~~A~~a~~~l~~~~ 72 (85)
T 2ytc_A 39 IRTITVVQR-QQCAFIQFATRQAAEVAAEKSFNKL 72 (85)
T ss_dssp EEEEEEEGG-GTEEEEEESSHHHHHHHHHTTTTTC
T ss_pred EeEEEEECC-CCEEEEEECCHHHHHHHHHHhcCCe
Confidence 666666544 899999999999999999988 543
No 178
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=20.20 E-value=3e+02 Score=25.16 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=38.3
Q ss_pred eeEEEEEeC-CeEEEeeCCCCCCceeE-Ecchhhhh--hccCCCeEEEeccccCCceEEEEEEe
Q 003225 241 KGWVEKVDE-ENVHIRPEMKGLPKTLA-VNSKELCK--YFEPGNHVKVVSGTQAGATGMVLKVE 300 (838)
Q Consensus 241 ~G~V~~V~~-d~V~i~~~~~~l~~~i~-v~~~~LrK--~F~~GDhVkVi~G~~~getGlVvkVe 300 (838)
.|+|++.-+ +...+..... ..+. --.--+|| ...+||.|.|---.|..+.|.|+.+.
T Consensus 35 ~G~Vi~~lgn~~y~V~~~dG---~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~ 95 (117)
T 2oqk_A 35 YGQVQRMLGNGRLDAYCFDG---QKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKY 95 (117)
T ss_dssp EEEEEEEEETTEEEEEETTS---CEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEEC
T ss_pred EEEEEEEcCCCEEEEEeCCC---CEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEe
Confidence 699999988 5777765432 2332 23334555 23589999997666777889888774
No 179
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=20.10 E-value=50 Score=31.01 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.6
Q ss_pred eecCCCEEEEEcCC----------CCCceeeEEEEECCEEEE
Q 003225 399 TVAVKDVVRIVEGP----------CKGKQGPVEHIYRGILFI 430 (838)
Q Consensus 399 ~i~~gd~Vki~~Gp----------~kG~~G~Vkhi~r~~lFL 430 (838)
-+.+||.|+|.+-+ ..|+.|+|..++..++|-
T Consensus 36 rF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G~~v~P 77 (126)
T 2zzd_A 36 KFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAA 77 (126)
T ss_dssp SSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEEEECCH
T ss_pred ccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEecccCCc
Confidence 48999999998654 379999999998665554
No 180
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=20.01 E-value=1e+02 Score=26.66 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=29.0
Q ss_pred EEEEEecC---CCceEEEEEecChHHHHHHHhcCccee
Q 003225 13 IRSVIALD---HLKNYIYIEADKEAHVKEACKGLRNIY 47 (838)
Q Consensus 13 I~Sv~~~~---~lkGyIyVEA~~~~~V~~ai~g~~~v~ 47 (838)
|.+|..+. ..+||-|||-.+..++..||+.+.+..
T Consensus 48 v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 48 ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp EEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred EEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 77776652 358999999999999999999988754
Done!