Query 003226
Match_columns 837
No_of_seqs 452 out of 3418
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 19:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 7E-149 2E-153 1304.6 69.3 733 64-835 2-738 (758)
2 PLN03244 alpha-amylase; Provis 100.0 1E-121 3E-126 1049.5 57.0 623 158-829 85-868 (872)
3 KOG0470 1,4-alpha-glucan branc 100.0 6E-119 1E-123 1014.0 47.0 690 129-830 39-755 (757)
4 PLN02960 alpha-amylase 100.0 6E-117 1E-121 1031.7 61.0 654 158-829 82-893 (897)
5 PRK12568 glycogen branching en 100.0 4E-102 8E-107 909.4 54.5 585 182-828 113-729 (730)
6 PRK14706 glycogen branching en 100.0 4E-101 8E-106 904.5 56.8 576 188-829 19-623 (639)
7 PRK14705 glycogen branching en 100.0 2E-100 4E-105 933.2 54.7 585 179-828 606-1223(1224)
8 PRK12313 glycogen branching en 100.0 4.4E-94 9.6E-99 854.4 58.4 583 188-831 19-631 (633)
9 PRK05402 glycogen branching en 100.0 5.4E-94 1.2E-98 863.0 58.3 609 147-829 84-725 (726)
10 TIGR01515 branching_enzym alph 100.0 2.3E-93 5E-98 843.1 55.4 578 188-826 9-613 (613)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 1.3E-91 2.8E-96 802.8 41.7 581 187-827 17-628 (628)
12 TIGR02104 pulA_typeI pullulana 100.0 1.4E-74 3E-79 683.6 45.2 510 195-784 11-600 (605)
13 TIGR02402 trehalose_TreZ malto 100.0 1.1E-71 2.5E-76 648.5 44.6 479 205-759 1-536 (542)
14 TIGR02100 glgX_debranch glycog 100.0 8.4E-70 1.8E-74 644.7 52.7 554 194-826 5-687 (688)
15 TIGR02102 pullulan_Gpos pullul 100.0 1.1E-69 2.4E-74 659.6 53.5 585 173-828 306-1005(1111)
16 PRK03705 glycogen debranching 100.0 9.2E-69 2E-73 631.3 48.6 548 193-827 9-657 (658)
17 TIGR02103 pullul_strch alpha-1 100.0 4.3E-66 9.3E-71 617.8 46.1 553 175-827 114-896 (898)
18 PLN02877 alpha-amylase/limit d 100.0 8E-64 1.7E-68 595.9 47.8 539 195-827 214-968 (970)
19 PRK14510 putative bifunctional 100.0 5E-61 1.1E-65 597.9 44.9 477 194-731 14-576 (1221)
20 PRK10785 maltodextrin glucosid 100.0 2.6E-57 5.7E-62 534.8 42.6 462 201-758 17-559 (598)
21 TIGR02456 treS_nterm trehalose 100.0 4.8E-57 1E-61 528.4 37.0 449 315-827 4-538 (539)
22 PRK10933 trehalose-6-phosphate 100.0 4.2E-56 9.2E-61 518.9 36.3 451 313-827 7-550 (551)
23 TIGR02403 trehalose_treC alpha 100.0 9.3E-56 2E-60 516.7 35.5 455 315-826 3-542 (543)
24 COG1523 PulA Type II secretory 100.0 3.6E-54 7.8E-59 502.1 41.0 552 193-829 17-693 (697)
25 PRK09505 malS alpha-amylase; R 100.0 1.5E-51 3.2E-56 485.2 34.3 368 311-757 184-681 (683)
26 PRK09441 cytoplasmic alpha-amy 100.0 4.1E-50 8.8E-55 464.3 33.1 375 334-825 19-478 (479)
27 PF00128 Alpha-amylase: Alpha 100.0 6.1E-45 1.3E-49 396.2 18.2 276 334-666 1-312 (316)
28 PLN00196 alpha-amylase; Provis 100.0 1.5E-42 3.3E-47 391.5 29.2 316 333-758 40-402 (428)
29 PLN02361 alpha-amylase 100.0 2.8E-40 6.2E-45 368.9 32.6 315 335-756 27-376 (401)
30 TIGR03852 sucrose_gtfA sucrose 100.0 8E-39 1.7E-43 360.8 23.2 373 331-759 14-462 (470)
31 PRK13840 sucrose phosphorylase 100.0 2.7E-38 5.9E-43 358.5 27.0 375 333-758 16-467 (495)
32 TIGR02455 TreS_stutzeri trehal 100.0 5E-37 1.1E-41 348.4 36.2 468 316-831 51-685 (688)
33 COG0366 AmyA Glycosidases [Car 100.0 4.9E-38 1.1E-42 366.3 28.3 399 317-759 1-485 (505)
34 PLN02784 alpha-amylase 100.0 4.1E-36 8.9E-41 351.1 28.9 328 316-755 498-865 (894)
35 KOG0471 Alpha-amylase [Carbohy 100.0 2.7E-34 5.8E-39 334.4 29.4 167 314-483 15-219 (545)
36 TIGR02401 trehalose_TreY malto 100.0 3.8E-31 8.2E-36 313.0 31.7 174 334-535 13-286 (825)
37 PRK14511 maltooligosyl trehalo 99.9 1.4E-25 3E-30 266.9 30.0 82 334-416 17-98 (879)
38 KOG2212 Alpha-amylase [Carbohy 99.9 8.5E-23 1.8E-27 213.4 22.3 377 335-784 38-465 (504)
39 smart00642 Aamy Alpha-amylase 99.9 3E-22 6.6E-27 199.4 10.1 93 321-414 1-97 (166)
40 cd02854 Glycogen_branching_enz 99.8 3.4E-20 7.3E-25 168.4 10.5 96 201-296 3-99 (99)
41 PF14872 GHL5: Hypothetical gl 99.8 2.4E-18 5.2E-23 192.8 24.1 307 194-539 26-439 (811)
42 PRK14507 putative bifunctional 99.7 1.6E-16 3.5E-21 200.3 9.7 91 317-414 744-834 (1693)
43 TIGR01531 glyc_debranch glycog 99.6 3.5E-13 7.6E-18 165.5 28.8 82 333-416 128-214 (1464)
44 COG3280 TreY Maltooligosyl tre 99.5 4.7E-14 1E-18 161.3 13.7 80 335-415 17-96 (889)
45 PF02922 CBM_48: Carbohydrate- 99.5 2.5E-14 5.4E-19 126.5 6.4 79 195-279 1-85 (85)
46 cd02860 Pullulanase_N_term Pul 99.4 3.3E-13 7.1E-18 123.4 9.1 92 196-299 1-97 (100)
47 cd02855 Glycogen_branching_enz 99.4 1.1E-12 2.3E-17 120.9 10.4 93 189-288 3-101 (106)
48 PF02806 Alpha-amylase_C: Alph 99.3 2.5E-12 5.4E-17 116.3 7.0 89 733-828 1-94 (95)
49 cd02856 Glycogen_debranching_e 99.3 5.7E-12 1.2E-16 115.8 9.0 81 195-283 1-91 (103)
50 cd02853 MTHase_N_term Maltooli 99.2 5.5E-11 1.2E-15 105.4 10.2 84 197-298 1-85 (85)
51 cd02852 Isoamylase_N_term Isoa 99.1 7.1E-10 1.5E-14 104.7 9.7 79 197-283 1-95 (119)
52 PRK05402 glycogen branching en 99.0 3.2E-10 7E-15 137.9 6.6 82 188-280 13-96 (726)
53 cd02858 Esterase_N_term Estera 98.9 4E-09 8.6E-14 93.5 7.8 56 203-267 6-62 (85)
54 cd02861 E_set_proteins_like E 98.8 1.1E-08 2.4E-13 90.0 7.4 55 204-267 3-57 (82)
55 PF02638 DUF187: Glycosyl hydr 98.5 6E-07 1.3E-11 98.7 12.8 188 335-529 17-225 (311)
56 cd02688 E_set E or "early" set 98.5 5.1E-07 1.1E-11 78.6 8.6 60 203-269 4-63 (83)
57 PF11941 DUF3459: Domain of un 98.4 1.3E-06 2.8E-11 77.9 10.0 83 713-825 1-89 (89)
58 PF14701 hDGE_amylase: glucano 98.4 4.3E-07 9.3E-12 101.9 7.7 82 333-416 18-106 (423)
59 PRK14508 4-alpha-glucanotransf 98.2 8.7E-05 1.9E-09 86.5 21.1 141 387-541 198-353 (497)
60 PF14871 GHL6: Hypothetical gl 98.2 9E-06 1.9E-10 78.0 9.5 121 342-478 4-132 (132)
61 COG1649 Uncharacterized protei 98.0 4.6E-05 1E-09 85.6 13.2 178 336-529 63-268 (418)
62 PF02446 Glyco_hydro_77: 4-alp 98.0 2.1E-05 4.6E-10 92.0 9.8 195 332-540 13-341 (496)
63 PLN02950 4-alpha-glucanotransf 98.0 0.00062 1.3E-08 84.5 22.5 191 150-363 103-308 (909)
64 PLN02635 disproportionating en 97.9 8.7E-05 1.9E-09 86.7 13.7 136 387-539 224-377 (538)
65 cd02859 AMPKbeta_GBD_like AMP- 97.9 2.8E-05 6E-10 67.9 6.8 53 205-267 4-56 (79)
66 PF02324 Glyco_hydro_70: Glyco 97.8 3.1E-05 6.8E-10 89.6 7.3 98 315-414 563-674 (809)
67 PRK14510 putative bifunctional 97.7 0.0015 3.2E-08 84.0 21.1 142 387-541 932-1084(1221)
68 PF02065 Melibiase: Melibiase; 97.5 0.002 4.4E-08 73.1 15.7 134 337-482 58-195 (394)
69 cd06593 GH31_xylosidase_YicI Y 97.4 0.0021 4.5E-08 70.9 14.2 131 335-482 22-161 (308)
70 cd06592 GH31_glucosidase_KIAA1 97.3 0.0014 3.1E-08 72.1 10.8 128 335-480 28-165 (303)
71 cd06594 GH31_glucosidase_YihQ 97.3 0.0012 2.6E-08 73.0 10.1 137 335-480 21-166 (317)
72 cd06597 GH31_transferase_CtsY 97.1 0.0036 7.8E-08 70.0 11.2 142 335-482 22-189 (340)
73 TIGR00217 malQ 4-alpha-glucano 97.0 0.016 3.5E-07 68.0 16.6 140 387-539 212-366 (513)
74 KOG3625 Alpha amylase [Carbohy 96.9 0.0011 2.5E-08 78.6 5.4 81 334-416 139-226 (1521)
75 PF02324 Glyco_hydro_70: Glyco 96.7 0.026 5.6E-07 66.3 14.1 38 445-482 144-190 (809)
76 PRK11052 malQ 4-alpha-glucanot 96.6 0.041 8.9E-07 66.8 16.2 187 387-604 355-554 (695)
77 PF00150 Cellulase: Cellulase 96.6 0.031 6.8E-07 59.9 13.9 137 339-533 22-172 (281)
78 PRK14582 pgaB outer membrane N 96.5 0.04 8.7E-07 66.4 15.1 132 335-479 332-467 (671)
79 cd06591 GH31_xylosidase_XylS X 96.5 0.014 3E-07 64.8 10.3 131 335-480 22-159 (319)
80 PF13200 DUF4015: Putative gly 96.5 0.032 7E-07 61.3 12.7 174 341-534 16-195 (316)
81 cd06600 GH31_MGAM-like This fa 96.2 0.0065 1.4E-07 67.3 5.9 131 335-480 22-160 (317)
82 PF13199 Glyco_hydro_66: Glyco 96.2 0.037 8E-07 65.3 11.9 127 341-481 121-269 (559)
83 cd06599 GH31_glycosidase_Aec37 96.0 0.012 2.6E-07 65.1 6.6 129 338-480 30-168 (317)
84 smart00632 Aamy_C Aamy_C domai 95.9 0.039 8.5E-07 48.3 8.1 71 739-826 6-78 (81)
85 PRK10426 alpha-glucosidase; Pr 95.9 0.084 1.8E-06 63.9 13.6 135 337-482 221-365 (635)
86 COG1640 MalQ 4-alpha-glucanotr 95.9 0.067 1.4E-06 62.3 12.1 90 387-482 210-308 (520)
87 cd06604 GH31_glucosidase_II_Ma 95.7 0.033 7.3E-07 62.3 8.6 129 335-480 22-159 (339)
88 cd06602 GH31_MGAM_SI_GAA This 95.7 0.022 4.7E-07 63.8 7.0 132 337-480 24-165 (339)
89 PRK14507 putative bifunctional 95.5 0.17 3.6E-06 66.6 14.6 187 387-604 386-585 (1693)
90 PF01055 Glyco_hydro_31: Glyco 95.4 0.022 4.7E-07 66.1 6.1 131 336-481 42-181 (441)
91 PF11852 DUF3372: Domain of un 95.1 0.034 7.3E-07 55.3 5.3 51 709-759 42-115 (168)
92 PRK10658 putative alpha-glucos 95.0 0.076 1.6E-06 64.5 9.2 128 338-482 284-420 (665)
93 TIGR01370 cysRS possible cyste 95.0 0.11 2.3E-06 57.4 9.4 84 437-531 127-211 (315)
94 cd06598 GH31_transferase_CtsZ 94.3 0.077 1.7E-06 58.8 6.3 131 336-479 23-163 (317)
95 PF07745 Glyco_hydro_53: Glyco 94.0 0.38 8.2E-06 53.5 10.8 147 341-531 27-174 (332)
96 COG1501 Alpha-glucosidases, fa 93.6 0.22 4.8E-06 61.3 9.1 86 391-482 325-417 (772)
97 cd06595 GH31_xylosidase_XylS-l 93.3 0.17 3.7E-06 55.4 6.8 129 335-479 23-158 (292)
98 cd06542 GH18_EndoS-like Endo-b 93.2 0.38 8.2E-06 51.4 9.0 64 385-478 49-112 (255)
99 cd06562 GH20_HexA_HexB-like Be 92.8 2.6 5.7E-05 47.3 15.5 176 337-536 18-214 (348)
100 cd02875 GH18_chitobiase Chitob 92.3 0.67 1.5E-05 52.3 9.8 85 390-527 67-152 (358)
101 cd06601 GH31_lyase_GLase GLase 92.0 0.39 8.5E-06 53.6 7.4 106 337-479 24-132 (332)
102 cd06564 GH20_DspB_LnbB-like Gl 91.8 2.2 4.7E-05 47.5 13.2 164 336-534 16-203 (326)
103 cd06603 GH31_GANC_GANAB_alpha 91.0 0.34 7.3E-06 54.3 5.7 129 335-479 22-161 (339)
104 KOG1065 Maltase glucoamylase a 90.4 1.4 3E-05 53.7 10.2 132 334-480 308-448 (805)
105 PF14488 DUF4434: Domain of un 90.2 0.74 1.6E-05 46.1 6.7 65 342-410 24-88 (166)
106 cd02742 GH20_hexosaminidase Be 89.9 2.9 6.2E-05 46.1 11.7 166 335-534 14-194 (303)
107 KOG3625 Alpha amylase [Carbohy 89.7 14 0.00031 45.5 17.4 69 442-538 495-569 (1521)
108 cd06545 GH18_3CO4_chitinase Th 89.7 3 6.4E-05 44.6 11.3 87 386-523 45-131 (253)
109 cd06568 GH20_SpHex_like A subg 89.6 5.9 0.00013 44.2 14.0 167 335-533 16-197 (329)
110 PLN02763 hydrolase, hydrolyzin 89.6 0.76 1.6E-05 57.7 7.4 128 336-480 200-336 (978)
111 PF14883 GHL13: Hypothetical g 88.7 11 0.00024 40.9 14.3 167 341-529 20-189 (294)
112 cd05808 CBM20_alpha_amylase Al 88.7 1.2 2.5E-05 39.9 6.3 58 205-268 3-66 (95)
113 COG3867 Arabinogalactan endo-1 88.7 3.6 7.9E-05 44.3 10.6 152 338-529 63-218 (403)
114 cd06589 GH31 The enzymes of gl 86.3 2.6 5.6E-05 45.5 8.3 93 334-480 21-116 (265)
115 cd06565 GH20_GcnA-like Glycosy 86.3 10 0.00022 41.7 13.1 166 336-534 16-188 (301)
116 PF02449 Glyco_hydro_42: Beta- 86.1 2 4.4E-05 48.7 7.7 115 341-477 13-135 (374)
117 cd06563 GH20_chitobiase-like T 85.7 15 0.00032 41.5 14.3 78 385-469 84-164 (357)
118 smart00812 Alpha_L_fucos Alpha 85.4 11 0.00023 43.1 13.0 115 342-479 85-202 (384)
119 PRK12568 glycogen branching en 84.4 2.1 4.5E-05 52.4 7.1 78 189-279 23-102 (730)
120 PF01120 Alpha_L_fucos: Alpha- 84.2 4.5 9.9E-05 45.4 9.3 149 341-531 94-243 (346)
121 COG3280 TreY Maltooligosyl tre 83.8 0.84 1.8E-05 54.6 3.2 46 713-758 775-827 (889)
122 cd06569 GH20_Sm-chitobiase-lik 83.8 5.6 0.00012 46.3 10.0 83 385-468 95-192 (445)
123 cd06547 GH85_ENGase Endo-beta- 83.8 2.2 4.8E-05 47.7 6.5 95 391-530 50-145 (339)
124 PF00686 CBM_20: Starch bindin 82.4 1.5 3.3E-05 39.5 3.7 60 205-270 4-73 (96)
125 cd05816 CBM20_DPE2_repeat2 Dis 82.4 5.3 0.00011 36.3 7.3 60 205-269 2-68 (99)
126 cd02871 GH18_chitinase_D-like 82.2 5.1 0.00011 44.3 8.6 61 385-478 58-118 (312)
127 PF08533 Glyco_hydro_42C: Beta 82.0 4 8.6E-05 33.2 5.7 46 749-826 12-57 (58)
128 PF10438 Cyc-maltodext_C: Cycl 81.6 2.9 6.2E-05 36.5 4.9 21 739-759 7-31 (78)
129 cd05814 CBM20_Prei4 Prei4, N-t 81.3 3.2 6.8E-05 39.2 5.6 56 205-266 3-67 (120)
130 PF00728 Glyco_hydro_20: Glyco 80.3 2.2 4.9E-05 47.6 5.0 125 335-470 16-156 (351)
131 cd06570 GH20_chitobiase-like_1 79.3 13 0.00027 41.3 10.3 120 337-469 18-146 (311)
132 PLN03236 4-alpha-glucanotransf 78.8 4.3 9.3E-05 49.8 6.9 89 387-481 274-371 (745)
133 PLN02316 synthase/transferase 77.5 23 0.0005 45.3 13.0 47 315-363 586-633 (1036)
134 cd02874 GH18_CFLE_spore_hydrol 76.4 16 0.00035 40.2 10.3 89 389-523 47-136 (313)
135 PLN02692 alpha-galactosidase 73.8 1.8E+02 0.0038 33.6 21.8 53 346-405 86-139 (412)
136 cd06543 GH18_PF-ChiA-like PF-C 73.5 64 0.0014 35.5 13.7 93 345-478 19-112 (294)
137 PRK14705 glycogen branching en 73.4 7.3 0.00016 50.5 7.2 80 190-279 517-598 (1224)
138 cd02857 CD_pullulan_degrading_ 73.2 9.8 0.00021 35.0 6.4 64 194-268 11-82 (116)
139 COG1523 PulA Type II secretory 72.9 7.7 0.00017 47.4 6.9 83 204-286 68-155 (697)
140 COG2342 Predicted extracellula 72.8 55 0.0012 35.4 12.3 156 341-530 33-190 (300)
141 PF01301 Glyco_hydro_35: Glyco 72.5 3.8 8.2E-05 45.5 4.0 59 341-409 27-85 (319)
142 cd05817 CBM20_DSP Dual-specifi 70.1 14 0.0003 33.6 6.5 57 205-267 2-64 (100)
143 PLN03236 4-alpha-glucanotransf 69.7 8.6 0.00019 47.2 6.4 59 331-390 77-139 (745)
144 TIGR03849 arch_ComA phosphosul 69.5 12 0.00026 39.6 6.6 46 342-407 75-120 (237)
145 PF13204 DUF4038: Protein of u 69.5 8.6 0.00019 42.1 5.9 66 342-411 34-110 (289)
146 cd05809 CBM20_beta_amylase Bet 69.3 15 0.00032 33.3 6.5 60 205-270 5-73 (99)
147 cd05467 CBM20 The family 20 ca 68.9 16 0.00035 32.4 6.7 60 205-269 2-69 (96)
148 TIGR03356 BGL beta-galactosida 68.4 31 0.00066 40.0 10.4 102 332-470 49-150 (427)
149 COG2730 BglC Endoglucanase [Ca 66.7 9.1 0.0002 44.0 5.6 59 340-408 75-137 (407)
150 PF10566 Glyco_hydro_97: Glyco 65.7 49 0.0011 36.0 10.5 64 335-408 30-94 (273)
151 PF03198 Glyco_hydro_72: Gluca 65.5 9.4 0.0002 41.9 5.0 48 342-412 57-104 (314)
152 PLN03059 beta-galactosidase; P 65.0 8.1 0.00018 47.9 4.9 56 342-407 63-118 (840)
153 PRK11052 malQ 4-alpha-glucanot 64.1 13 0.00028 45.7 6.4 64 330-394 158-224 (695)
154 PF05913 DUF871: Bacterial pro 63.3 13 0.00027 42.1 5.7 58 335-410 12-70 (357)
155 cd05813 CBM20_genethonin_1 Gen 62.9 27 0.00058 31.3 6.8 56 205-267 3-64 (95)
156 cd00598 GH18_chitinase-like Th 62.6 89 0.0019 31.7 11.6 64 385-478 47-112 (210)
157 PF09260 DUF1966: Domain of un 59.0 24 0.00051 31.8 5.6 70 740-829 5-83 (91)
158 PF14701 hDGE_amylase: glucano 57.0 21 0.00045 41.1 6.1 40 441-482 359-404 (423)
159 PTZ00445 p36-lilke protein; Pr 55.8 23 0.0005 36.9 5.6 64 336-405 27-96 (219)
160 cd04747 OYE_like_5_FMN Old yel 55.3 1.1E+02 0.0023 34.8 11.4 132 386-527 77-212 (361)
161 PF13380 CoA_binding_2: CoA bi 54.6 16 0.00034 34.3 3.9 39 341-405 69-107 (116)
162 PF03423 CBM_25: Carbohydrate 54.2 28 0.00061 30.9 5.3 34 213-246 17-55 (87)
163 PF00724 Oxidored_FMN: NADH:fl 51.6 47 0.001 37.2 7.9 24 386-409 79-102 (341)
164 cd02931 ER_like_FMN Enoate red 51.5 2.1E+02 0.0046 32.6 13.2 25 386-412 82-106 (382)
165 PF03644 Glyco_hydro_85: Glyco 50.9 22 0.00047 39.4 4.9 94 391-530 46-140 (311)
166 cd04733 OYE_like_2_FMN Old yel 50.2 1.6E+02 0.0035 32.8 11.9 28 386-415 81-108 (338)
167 cd06546 GH18_CTS3_chitinase GH 49.6 74 0.0016 34.2 8.6 66 383-478 55-120 (256)
168 PF02679 ComA: (2R)-phospho-3- 49.4 30 0.00066 36.9 5.5 48 341-408 87-134 (244)
169 cd05811 CBM20_glucoamylase Glu 48.8 53 0.0011 29.9 6.4 60 205-270 9-78 (106)
170 cd02929 TMADH_HD_FMN Trimethyl 48.6 1.7E+02 0.0037 33.2 11.8 28 386-415 82-109 (370)
171 COG3589 Uncharacterized conser 46.9 15 0.00033 40.6 2.8 53 342-410 20-72 (360)
172 smart00636 Glyco_18 Glycosyl h 46.7 51 0.0011 36.5 7.1 55 450-523 87-142 (334)
173 cd06548 GH18_chitinase The GH1 46.5 51 0.0011 36.5 7.1 29 450-478 105-133 (322)
174 cd02872 GH18_chitolectin_chito 45.6 46 0.001 37.4 6.7 63 450-528 92-155 (362)
175 cd05815 CBM20_DPE2_repeat1 Dis 45.5 70 0.0015 28.9 6.6 58 205-268 2-68 (101)
176 PRK10605 N-ethylmaleimide redu 45.5 2.9E+02 0.0064 31.2 13.0 28 386-415 78-105 (362)
177 cd02932 OYE_YqiM_FMN Old yello 44.4 3.3E+02 0.0071 30.3 13.2 68 341-415 33-103 (336)
178 PF00704 Glyco_hydro_18: Glyco 44.4 54 0.0012 36.1 6.9 56 451-523 96-152 (343)
179 PRK08207 coproporphyrinogen II 43.1 47 0.001 39.2 6.3 62 340-411 268-330 (488)
180 COG1306 Uncharacterized conser 42.9 82 0.0018 34.4 7.4 131 337-480 76-219 (400)
181 PRK09852 cryptic 6-phospho-bet 42.0 1.2E+02 0.0026 35.7 9.4 104 332-470 66-169 (474)
182 cd05820 CBM20_novamyl Novamyl 41.4 1.1E+02 0.0024 27.9 7.2 61 204-270 4-75 (103)
183 PRK13210 putative L-xylulose 5 41.2 44 0.00095 35.9 5.4 51 342-405 20-70 (284)
184 cd06549 GH18_trifunctional GH1 40.9 57 0.0012 35.7 6.3 54 449-523 83-137 (298)
185 TIGR00539 hemN_rel putative ox 40.8 52 0.0011 37.1 6.1 64 341-414 100-164 (360)
186 cd02876 GH18_SI-CLP Stabilin-1 40.4 49 0.0011 36.5 5.8 29 450-478 88-116 (318)
187 TIGR01210 conserved hypothetic 40.1 40 0.00086 37.4 4.9 60 341-410 117-178 (313)
188 cd02879 GH18_plant_chitinase_c 39.8 56 0.0012 35.9 6.0 28 450-477 88-115 (299)
189 cd04734 OYE_like_3_FMN Old yel 39.6 3E+02 0.0064 30.9 11.8 28 386-415 76-103 (343)
190 PLN02411 12-oxophytodienoate r 39.5 2.9E+02 0.0063 31.6 11.9 28 386-415 86-113 (391)
191 PF01212 Beta_elim_lyase: Beta 39.2 27 0.00058 38.3 3.3 23 385-407 143-165 (290)
192 KOG0496 Beta-galactosidase [Ca 38.6 52 0.0011 39.6 5.7 59 341-409 52-110 (649)
193 cd02877 GH18_hevamine_XipI_cla 38.6 4.5E+02 0.0097 28.7 12.6 59 345-406 18-78 (280)
194 PRK05628 coproporphyrinogen II 37.8 39 0.00085 38.3 4.5 65 340-414 107-172 (375)
195 TIGR00433 bioB biotin syntheta 37.7 70 0.0015 34.7 6.4 60 341-411 123-182 (296)
196 cd02803 OYE_like_FMN_family Ol 37.5 1.6E+02 0.0034 32.5 9.2 86 386-480 76-164 (327)
197 PRK01060 endonuclease IV; Prov 36.8 69 0.0015 34.4 6.1 50 339-403 14-63 (281)
198 PRK08208 coproporphyrinogen II 36.4 44 0.00095 38.7 4.7 66 340-415 140-206 (430)
199 KOG0256 1-aminocyclopropane-1- 36.3 36 0.00078 38.7 3.7 61 335-413 209-272 (471)
200 cd05818 CBM20_water_dikinase P 36.1 1.3E+02 0.0029 26.7 6.8 58 205-270 4-66 (92)
201 PRK10076 pyruvate formate lyas 35.9 84 0.0018 32.8 6.3 59 342-405 149-211 (213)
202 cd04735 OYE_like_4_FMN Old yel 35.9 3.7E+02 0.0081 30.2 12.0 129 386-524 77-208 (353)
203 PRK13523 NADPH dehydrogenase N 35.8 3.8E+02 0.0082 30.0 11.8 153 347-523 46-205 (337)
204 PF02903 Alpha-amylase_N: Alph 35.5 58 0.0013 30.4 4.6 61 200-267 18-89 (120)
205 PRK05904 coproporphyrinogen II 34.9 45 0.00098 37.6 4.4 63 341-413 103-166 (353)
206 PRK07094 biotin synthase; Prov 34.5 67 0.0014 35.5 5.6 61 341-411 129-189 (323)
207 PRK09856 fructoselysine 3-epim 33.9 78 0.0017 33.8 5.9 48 342-404 17-64 (275)
208 PRK15447 putative protease; Pr 33.7 83 0.0018 34.6 6.1 52 334-405 15-66 (301)
209 COG1902 NemA NADH:flavin oxido 32.7 3.9E+02 0.0085 30.4 11.3 26 386-413 82-107 (363)
210 PRK05692 hydroxymethylglutaryl 32.1 4.2E+02 0.0091 28.9 11.2 58 387-479 120-178 (287)
211 cd05810 CBM20_alpha_MTH Glucan 31.2 1.2E+02 0.0025 27.4 5.6 49 214-268 15-67 (97)
212 cd02930 DCR_FMN 2,4-dienoyl-Co 31.2 5.1E+02 0.011 29.1 12.1 29 385-415 75-103 (353)
213 PRK09249 coproporphyrinogen II 31.1 70 0.0015 37.3 5.3 66 340-415 150-216 (453)
214 PRK08446 coproporphyrinogen II 31.0 78 0.0017 35.6 5.4 63 341-413 98-161 (350)
215 PF09154 DUF1939: Domain of un 30.9 1.3E+02 0.0028 24.6 5.2 56 751-826 1-57 (57)
216 PRK06256 biotin synthase; Vali 30.8 71 0.0015 35.5 5.1 61 340-411 151-211 (336)
217 PRK08255 salicylyl-CoA 5-hydro 30.8 4.3E+02 0.0094 33.1 12.4 29 386-416 474-503 (765)
218 PRK08599 coproporphyrinogen II 30.3 70 0.0015 36.3 5.0 64 341-414 100-164 (377)
219 PRK05660 HemN family oxidoredu 29.7 1E+02 0.0022 35.0 6.2 65 341-415 107-172 (378)
220 PRK05799 coproporphyrinogen II 28.9 79 0.0017 35.7 5.1 65 340-414 98-163 (374)
221 PRK15452 putative protease; Pr 28.7 1.1E+02 0.0023 35.8 6.2 50 343-405 15-64 (443)
222 PRK12928 lipoyl synthase; Prov 28.6 1.3E+02 0.0028 33.0 6.5 61 335-406 217-277 (290)
223 PRK13347 coproporphyrinogen II 28.6 74 0.0016 37.1 4.9 64 341-414 152-216 (453)
224 PRK14581 hmsF outer membrane N 28.5 5.5E+02 0.012 31.7 12.2 126 341-477 337-465 (672)
225 PF07071 DUF1341: Protein of u 28.0 1.2E+02 0.0025 31.4 5.4 43 341-403 138-180 (218)
226 COG0041 PurE Phosphoribosylcar 28.0 63 0.0014 31.9 3.4 52 335-408 14-65 (162)
227 TIGR00542 hxl6Piso_put hexulos 27.5 96 0.0021 33.3 5.3 50 342-404 20-69 (279)
228 KOG0259 Tyrosine aminotransfer 26.8 70 0.0015 36.2 3.9 31 385-415 217-247 (447)
229 PRK07379 coproporphyrinogen II 26.6 63 0.0014 37.1 3.8 65 341-415 115-180 (400)
230 COG0520 csdA Selenocysteine ly 26.3 57 0.0012 37.5 3.4 37 373-409 165-201 (405)
231 TIGR00538 hemN oxygen-independ 26.2 85 0.0019 36.6 4.8 64 341-414 151-215 (455)
232 KOG2499 Beta-N-acetylhexosamin 26.0 2.9E+02 0.0063 32.4 8.6 30 385-414 248-278 (542)
233 cd05014 SIS_Kpsf KpsF-like pro 26.0 1.5E+02 0.0033 27.4 5.8 62 343-405 18-79 (128)
234 PF15640 Tox-MPTase4: Metallop 25.5 63 0.0014 30.6 2.8 26 381-406 16-41 (132)
235 cd00287 ribokinase_pfkB_like r 25.5 1.2E+02 0.0026 30.0 5.3 52 343-409 42-93 (196)
236 cd02933 OYE_like_FMN Old yello 25.4 8.1E+02 0.018 27.4 12.3 28 386-415 76-103 (338)
237 PF14587 Glyco_hydr_30_2: O-Gl 25.3 3E+02 0.0066 31.4 8.6 116 390-533 107-227 (384)
238 PRK15014 6-phospho-beta-glucos 25.2 4E+02 0.0087 31.4 10.1 104 332-470 64-167 (477)
239 PRK05939 hypothetical protein; 24.7 86 0.0019 35.9 4.4 30 380-409 141-170 (397)
240 PRK05967 cystathionine beta-ly 24.2 91 0.002 35.8 4.4 32 379-410 158-189 (395)
241 PRK09058 coproporphyrinogen II 23.9 91 0.002 36.4 4.5 64 341-414 163-227 (449)
242 TIGR01211 ELP3 histone acetylt 23.8 87 0.0019 37.3 4.3 61 340-410 205-265 (522)
243 PF01261 AP_endonuc_2: Xylose 23.1 47 0.001 33.4 1.7 45 344-405 1-45 (213)
244 PRK09028 cystathionine beta-ly 23.0 97 0.0021 35.5 4.4 28 383-410 159-186 (394)
245 PF07894 DUF1669: Protein of u 22.7 71 0.0015 34.8 3.0 27 381-408 131-157 (284)
246 PRK09331 Sep-tRNA:Cys-tRNA syn 22.6 77 0.0017 35.9 3.5 30 381-410 169-198 (387)
247 cd00609 AAT_like Aspartate ami 22.6 94 0.002 33.7 4.1 54 343-412 124-177 (350)
248 PRK09593 arb 6-phospho-beta-gl 21.9 6.4E+02 0.014 29.7 11.0 104 332-470 68-171 (478)
249 PLN02389 biotin synthase 21.9 1.9E+02 0.0042 32.9 6.5 60 341-411 178-237 (379)
250 TIGR03471 HpnJ hopanoid biosyn 21.9 1.6E+02 0.0034 34.5 6.0 60 341-410 287-346 (472)
251 PRK04302 triosephosphate isome 21.8 1.6E+02 0.0035 30.8 5.4 44 343-406 77-120 (223)
252 TIGR01324 cysta_beta_ly_B cyst 21.3 1.1E+02 0.0024 34.8 4.4 30 381-410 146-175 (377)
253 COG1640 MalQ 4-alpha-glucanotr 21.2 1.7E+02 0.0038 34.7 6.0 75 315-392 16-92 (520)
254 PRK06582 coproporphyrinogen II 21.2 1.2E+02 0.0025 34.8 4.6 65 341-415 111-175 (390)
255 PRK09997 hydroxypyruvate isome 21.0 2.5E+02 0.0054 29.7 6.9 29 383-411 155-183 (258)
256 cd06544 GH18_narbonin Narbonin 20.9 2.4E+02 0.0052 30.2 6.6 24 455-478 98-121 (253)
257 cd06452 SepCysS Sep-tRNA:Cys-t 20.7 75 0.0016 35.5 2.9 30 381-410 150-179 (361)
258 PRK07324 transaminase; Validat 20.7 1.4E+02 0.0031 33.5 5.2 28 385-412 171-198 (373)
259 cd00615 Orn_deC_like Ornithine 20.6 66 0.0014 34.9 2.4 27 383-409 166-192 (294)
260 cd01335 Radical_SAM Radical SA 20.6 1.5E+02 0.0032 28.9 4.7 61 341-410 88-148 (204)
261 PRK09057 coproporphyrinogen II 20.4 1.1E+02 0.0023 35.0 4.0 63 342-414 105-167 (380)
262 PRK07050 cystathionine beta-ly 20.3 1.2E+02 0.0026 34.7 4.4 30 382-411 162-191 (394)
263 PRK13511 6-phospho-beta-galact 20.1 7E+02 0.015 29.3 10.8 104 330-470 47-150 (469)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=7.1e-149 Score=1304.55 Aligned_cols=733 Identities=74% Similarity=1.277 Sum_probs=677.8
Q ss_pred cCccEeeCCCCCCCCCCccccccCCCccccccccccccchhhcccccccccccCCcccccCcccccchhhhhccCCCCCC
Q 003226 64 ASEKVLVPGSQSDDPSAVTDQLETPETVSEDIEVRNGIESLQMEDNENVEIEDHGPVTLQGKVSSEKSEVKREVGPRSIP 143 (837)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (837)
.+..++.|++++++.++++.+...+.......++.+.....+.+ ......+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 54 (758)
T PLN02447 2 LSEHVLSPDGLPDSAPSPSPAVDEPRPEDPGSPATEAPYPAKTE---------------------------DNSAAASPP 54 (758)
T ss_pred CccccccCCCcCCCCCCCCCCCCcCCCCCcccccccCCcccccc---------------------------cccccccCC
Confidence 46778999999999888877777666333333332222222221 111223688
Q ss_pred CCCCCCcceecCCCCcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEeCCcEEEEEeCCCcCEEEEEeec
Q 003226 144 PPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDF 223 (837)
Q Consensus 144 ~~~~~~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~gv~fr~WAP~A~~V~L~gDf 223 (837)
+|.++.+|+++||||+||+++|++|+..|.+++++|.+.+|||++|+++|++||+|+.++||+||||||+|++|+|+|||
T Consensus 55 ~~~~~~~~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdF 134 (758)
T PLN02447 55 PPGDGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAALIGDF 134 (758)
T ss_pred CCCCcceeeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC-ccccCCccceeeccCCCC--CCCCcEEeCCCc
Q 003226 224 NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQAPGE--IPYNGIYYDPPE 300 (837)
Q Consensus 224 n~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~ 300 (837)
|+|++..++|+|.++|+|+++||+ .+|.++++||++|||+|.+.+| ..+++|||++++++.|++ ..+++++|||++
T Consensus 135 N~W~~~~~~M~~~~~GvWe~~ip~-~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~ 213 (758)
T PLN02447 135 NNWNPNAHWMTKNEFGVWEIFLPD-ADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPE 213 (758)
T ss_pred CCCCCCccCceeCCCCEEEEEECC-ccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCC
Confidence 999998999999999999999999 8889999999999999998866 468999999999999875 368999999976
Q ss_pred cccccccCCCCCCCCCceEEEEecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCC
Q 003226 301 EEKYVFQHPQPKKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS 380 (837)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~IYE~hv~~f~~~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd 380 (837)
.++|.|++++++.+.+++|||+|||+|+.++++|+|++|++++|||||+|||||||||||++++++++|||++++||+|+
T Consensus 214 ~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~ 293 (758)
T PLN02447 214 EEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS 293 (758)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc
Confidence 56799998887778899999999999998888999999998899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 003226 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLS 460 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~ 460 (837)
++|||++|||+||++||++||+||||||+||++.++..+++.|||+...||+.+..++++.|++.+|||++++||+||++
T Consensus 294 ~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~ 373 (758)
T PLN02447 294 SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLS 373 (758)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998777889999988889998888888999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCc
Q 003226 461 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF 540 (837)
Q Consensus 461 ~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~ 540 (837)
+++||++||||||||||+|++|+|.|||+...|+++|++|||+++|.+++.||+++|+.|++.+|++++|||+++++|.+
T Consensus 374 ~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l 453 (758)
T PLN02447 374 NLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTL 453 (758)
T ss_pred HHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCcccchhcchhhHHHHHHHHhh-cchhhhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHH
Q 003226 541 CIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 619 (837)
Q Consensus 541 ~~~~~~gglgFd~~~~~~~~d~~~~~l~~-~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~ 619 (837)
|+|+..||+||||+|+|+|+++|+++++. .++.|.++.+.+++.++++.+++|.|++||||+++|++|+++|+|+++||
T Consensus 454 ~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my 533 (758)
T PLN02447 454 CRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMY 533 (758)
T ss_pred cccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhh
Confidence 99999999999999999999999999995 58899999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCC
Q 003226 620 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 699 (837)
Q Consensus 620 ~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w 699 (837)
++|+++.+.++.++|++++|||+++++|++||.++|||||+|||+++|+|||++ ||+++|.++|++|++
T Consensus 534 ~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~-----------~n~ws~~~~~~~W~L 602 (758)
T PLN02447 534 DGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPRE-----------GNGWSYDKCRRRWDL 602 (758)
T ss_pred hcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCccc-----------ccccCcccccCCccc
Confidence 999999999999999999999999999999999899999999999999999994 999999999988888
Q ss_pred CCcccccchHHHHHHHHHHHHHHHhccCCCCcEEEEeecCCCcEEEEEcCeEEEEEECCCCCcccceEEeccCCceEEEE
Q 003226 700 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIV 779 (837)
Q Consensus 700 ~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~v 779 (837)
.+.+.++++.|++|+|+|++|++++++|..+++|+.+.+++++||||+|..+||||||+|++++.+|+|++|.+|+|+++
T Consensus 603 ~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~ll~V~NF~p~~s~~~Y~igvp~~G~y~~i 682 (758)
T PLN02447 603 ADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYRVGCDKPGKYKIV 682 (758)
T ss_pred cCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCCeEEEEeCCCCCCCCCcEECCCCCCeEEEE
Confidence 77666789999999999999999999999999999999999999999999999999999877899999999999999999
Q ss_pred EeCCCCccCCccccCCCcccccccCccCCCCeEEEEEECCceEEEEEEecCCCCCC
Q 003226 780 LDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALADEEEQPL 835 (837)
Q Consensus 780 l~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~~~~~~~~ 835 (837)
||||+..|||+++++....+.+.+.+|++++++++|+|||++++||++.++.+...
T Consensus 683 lnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~~~~~~ 738 (758)
T PLN02447 683 LDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDEDDEPA 738 (758)
T ss_pred ECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEECCcccccc
Confidence 99999999999998766677888888999999999999999999999987555443
No 2
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.4e-121 Score=1049.48 Aligned_cols=623 Identities=40% Similarity=0.788 Sum_probs=579.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEeCC-cEEEEEeCCCcCEEEEEeecCCCCCCccc----
Q 003226 158 LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGDFNNWNPNADI---- 232 (837)
Q Consensus 158 l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~-gv~fr~WAP~A~~V~L~gDfn~w~~~~~~---- 232 (837)
-+.|++.|+.||+..++++.+|.+.+++|..||+||+.||+|++.+ +++|++|||+|...+|+||||+|+++.+.
T Consensus 85 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~ 164 (872)
T PLN03244 85 DKIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREG 164 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccc
Confidence 5789999999999999999999999999999999999999999986 79999999999999999999999988765
Q ss_pred -cccCCCceEEEEeCCCC--------------------------------------------------------------
Q 003226 233 -MTQNEFGVWEIFLPNNA-------------------------------------------------------------- 249 (837)
Q Consensus 233 -m~r~~~GvWei~ip~~~-------------------------------------------------------------- 249 (837)
|.|++.|+|+|.|+..+
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (872)
T PLN03244 165 HFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRFIKNRFEVAAKLYEQ 244 (872)
T ss_pred cccccccceEEEEechhhhcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhHHHhHHHHHHHHHHH
Confidence 77999999999995442
Q ss_pred ---------------------------------------------C--C-------------------------------
Q 003226 250 ---------------------------------------------D--G------------------------------- 251 (837)
Q Consensus 250 ---------------------------------------------~--g------------------------------- 251 (837)
+ |
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (872)
T PLN03244 245 IFGPNGPETEEELEDIPDAETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREKFRAKEPPIAYWLES 324 (872)
T ss_pred hhCCCCccchhhhccCcchHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHHhhccCCChhhHHHh
Confidence 0 0
Q ss_pred -----------CCCCCCCCEEEEEEeCCCCccccCCccceeeccCCCCCCCCcEEeCCCccccccccCCCCCCCCCceEE
Q 003226 252 -----------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIY 320 (837)
Q Consensus 252 -----------~~~~~~g~~yk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~IY 320 (837)
.++|+||++||+.+.+++|..+|+|+|+++++|++....|++++|+|+..++|.|++++|++|..++||
T Consensus 325 ~~~~~~w~~~~~~~i~H~s~~k~~~~~~~g~~~RiPaw~~~~~~~~~~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIY 404 (872)
T PLN03244 325 RKGRKAWLKKYIPAIPHGSKYRLYFNTPDGPLERIPAWATYVLPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIY 404 (872)
T ss_pred hcccCceeecccCCCCCCCeEEEEEEcCCCCcccCCCCeeeEEecCCCCceeeeEeCCCcccCCccCCCCCCCCCCceEE
Confidence 125899999999999988878999999999999988889999999999878899999999999999999
Q ss_pred EEecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcC
Q 003226 321 EAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 400 (837)
Q Consensus 321 E~hv~~f~~~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~G 400 (837)
|+|||++++++++|||++|+++ +++||+|+++|||++|||+||++||++|
T Consensus 405 E~HvGms~~e~kv~ty~eF~~~------------------------------vt~fFApssRYGTPeDLK~LVD~aH~~G 454 (872)
T PLN03244 405 ECHVGISGSEPKISSFEEFTEK------------------------------VTNFFAASSRYGTPDDFKRLVDEAHGLG 454 (872)
T ss_pred EEEeeecCCCCCcccHHHHhhc------------------------------cCcccccCcccCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999952 6899999999999999999999999999
Q ss_pred CEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 401 LLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 401 I~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
|+||||||+||++.+...+++.|+|++..||+.+.++.+..||+..||+++++|++||+++++||++||||||||||+|+
T Consensus 455 I~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVt 534 (872)
T PLN03244 455 LLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLA 534 (872)
T ss_pred CEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecch
Confidence 99999999999999877789999998878999888888999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceeccccCCcccchhcchhhH
Q 003226 481 SMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIA 560 (837)
Q Consensus 481 ~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~ 560 (837)
+|+|.|||+ .+|++++.++++...|.+++.||+++|+.+++.+|++++|||+++++|.+|+|...||+||||+|+|+|+
T Consensus 535 SMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwm 613 (872)
T PLN03244 535 SMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAP 613 (872)
T ss_pred hheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcch
Confidence 999999999 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-cchhhhhhhhHHhh-ccCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHH
Q 003226 561 DKWIELLKK-RDEDWKMGAIVHTM-TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIAL 638 (837)
Q Consensus 561 d~~~~~l~~-~~~~~~~~~l~~~l-~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 638 (837)
++|+++++. .+..|.++.+.+++ +++++.+++|+|+||||++.+|++++++|+++++||..|. .++++.|++++
T Consensus 614 dd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~----~~~vv~Rg~aL 689 (872)
T PLN03244 614 DMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLG----GKELLDRGCSL 689 (872)
T ss_pred HHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhcccccccccc----cchhhhhhhHH
Confidence 999999995 45669999999987 6788888999999999999999999999999999998873 46788899999
Q ss_pred HHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHH
Q 003226 639 HKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQ 718 (837)
Q Consensus 639 ~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li 718 (837)
+||++++++++||.|+|||||+|||+++|.++|++ ||++++..+|++|++.+. ..++.|++|+|+|+
T Consensus 690 hKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~-----------gN~~s~~~arrdW~Lld~--~~hk~L~~FdrdLn 756 (872)
T PLN03244 690 HKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMP-----------SNNFSFSLANRCWDLLEN--EVHHHLFSFDKDLM 756 (872)
T ss_pred HHHHHHHHHHccCccceeecccccCCchheecccc-----------CCCccccccccCccccCC--hhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 999999999887777554 35899999999999
Q ss_pred HHHHHhccCCCCcEEEEeecCCCcEEEEEcCeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcc
Q 003226 719 HLEEKYGFMTSEHQYVSRKDQGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAE 798 (837)
Q Consensus 719 ~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~ 798 (837)
+|++++++|..+++|+.+.+++++||||.|..+||||||+|++++.+|+|+||.+|+|+++||||+..|||+++++...
T Consensus 757 ~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~~~FGG~g~~~~~~- 835 (872)
T PLN03244 757 DLDENEGILSRGLPNIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDETKYGGQGIIEEDH- 835 (872)
T ss_pred HHHhcCcccccCCcEEeeecCCCCEEEEEecCEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCChhhhCCCCccCCCc-
Confidence 9999999999999999999999999999999999999999977899999999999999999999999999999987654
Q ss_pred ccc--ccCccCCCCeEEEEEECCceEEEEEEec
Q 003226 799 YFS--SEGWYDDRPHSFLVYAPSRTAVVYALAD 829 (837)
Q Consensus 799 ~~~--~~~~~~~~~~~~~l~Lp~~s~~Vl~~~~ 829 (837)
+.+ .+..|+++++++.|+|||++++||++.+
T Consensus 836 ~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~ 868 (872)
T PLN03244 836 YLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSR 868 (872)
T ss_pred eeecccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 544 4456899999999999999999999865
No 3
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-119 Score=1013.97 Aligned_cols=690 Identities=57% Similarity=0.972 Sum_probs=650.4
Q ss_pred cchhhhhccCCCCCCCCCCCCcceecCCCCcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEeCCc-EEE
Q 003226 129 EKSEVKREVGPRSIPPPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITY 207 (837)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~g-v~f 207 (837)
.+...+.+.+...+| +.+..+++++||||.+|..++++|++.+.+.++.|.+.+++|..|+++|+.||+|.++++ +.|
T Consensus 39 ~~~~~~~e~~~~~~p-~~~ve~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~ 117 (757)
T KOG0470|consen 39 YDLRSALEAKSGDLP-ADVVEKFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDF 117 (757)
T ss_pred hhhHHHhhhhcCCCC-hHHhhcccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceee
Confidence 333455666777777 899999999999999999999999999999999999999999999999999999999888 999
Q ss_pred EEeCCCcCEEEEEeecCCCCCCccccc-cCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC-ccccCCccceeeccC
Q 003226 208 REWAPGAKSASLIGDFNNWNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQA 285 (837)
Q Consensus 208 r~WAP~A~~V~L~gDfn~w~~~~~~m~-r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~-~~~~~~~~~~~~~~~ 285 (837)
++|||.|++|+++||||+|+.....|. |++.|+|++++|...+|..+++|++.+++.+.+++| .+.++|+|++++.+.
T Consensus 118 ~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~ 197 (757)
T KOG0470|consen 118 TEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQE 197 (757)
T ss_pred eeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCC
Confidence 999999999999999999999888877 899999999999998999999999999999999988 579999999999998
Q ss_pred CCCCCCCcEEeCCCccccccccCCCCCCCC-CceEEEEecCCCC-CCCCCCC---HHhhHhhhhhHHHHcCCCEEEECCc
Q 003226 286 PGEIPYNGIYYDPPEEEKYVFQHPQPKKPK-SLRIYEAHVGMSS-TEPIINT---YANFRDDVLPRIKRLGYNAVQIMAV 360 (837)
Q Consensus 286 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~IYE~hv~~f~-~~~~~G~---~~~~~~~~LdyLk~LGvt~I~L~Pi 360 (837)
+...+|.+++|||++...|.|++++|+.|+ +++|||+|||.|| .++++-+ |++|++..||+||+||+||||||||
T Consensus 198 ~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi 277 (757)
T KOG0470|consen 198 GEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPI 277 (757)
T ss_pred CcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeeh
Confidence 888889999999987778888888888887 9999999997665 4455444 9999965599999999999999999
Q ss_pred ccc-CCCCCCCCcccccccCCCCCCCHH------HHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCC-Ccccc
Q 003226 361 QEH-SYYASFGYHVTNFFAPSSRCGTPD------DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTD-GHYFH 432 (837)
Q Consensus 361 ~e~-~~~~s~GY~~~~y~avd~~~Gt~e------dfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~-~~yf~ 432 (837)
+|| .++.+|||+|++||+|.+||||++ |||.||++||..||-||||||+||++++..++++.|||++ ..||+
T Consensus 278 ~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~ 357 (757)
T KOG0470|consen 278 FEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFH 357 (757)
T ss_pred hhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCcCCceEEE
Confidence 999 688999999999999999999999 9999999999999999999999999998889999999999 78999
Q ss_pred cCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcc---cCchH
Q 003226 433 SGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA---TDVDA 509 (837)
Q Consensus 433 ~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~---~d~~a 509 (837)
.+++++|+.|+++.||+++|+|+++|+++|+||++||||||||||.+++|+|.|||...+|+++|.+|+|.. .+.++
T Consensus 358 ~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~ 437 (757)
T KOG0470|consen 358 SGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDA 437 (757)
T ss_pred eCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 88999
Q ss_pred HHHHHHHHHhhhccCCCeEEEEeccCCCCCc-eeccccCCcccc--hhcchhhHHHHHHHHhh-cchhhhhhhhHHhhcc
Q 003226 510 VVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF-CIPVQDGGVGFD--YRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTN 585 (837)
Q Consensus 510 ~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~-~~~~~~gglgFd--~~~~~~~~d~~~~~l~~-~~~~~~~~~l~~~l~~ 585 (837)
+.+++.+++.++...|+.|++||+.+++|.. |.|..+|+.||| |+.+|...++|++.|+. .+.+|.++.+...+++
T Consensus 438 l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN 517 (757)
T KOG0470|consen 438 LVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTN 517 (757)
T ss_pred HHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeec
Confidence 9999999999999999999999999999999 999999999999 99999999999999997 7899999999999999
Q ss_pred CcccccceecccCcccccccc-cchhh-hccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccC
Q 003226 586 RRWLEKCVAYAESHDQALVGD-KTIAF-WLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 663 (837)
Q Consensus 586 ~~~~~~~v~y~esHD~~r~g~-~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G 663 (837)
+++++++++|+++||++.+|+ +|+++ |+|++.||+.|+..++.+++++|++++|||++++++++.|..+|+|||||||
T Consensus 518 ~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfG 597 (757)
T KOG0470|consen 518 RRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFG 597 (757)
T ss_pred cccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccC
Confidence 999999999999999999999 99999 9999999999999999999999999999999999999877777889999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCcccCc-ccCCCCcccccc-hHHHHHHHHHHHHHHHhccCCCCcEEEEeecCCC
Q 003226 664 HPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRR-RFDLGDADYLRY-RGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGD 741 (837)
Q Consensus 664 ~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~-~~~w~~~~~~~~-~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~~~ 741 (837)
|++|.++|+ .+|++++.++|+ +++..+.+..++ +.+.+|.++|+.|.+.+..++.+.+++...++.+
T Consensus 598 h~e~~d~~~-----------~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~ 666 (757)
T KOG0470|consen 598 HPEWLDFPR-----------YGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEAD 666 (757)
T ss_pred CccccCCCc-----------ccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhh
Confidence 999999998 599999999999 999999888888 8899999999999999999999999999999999
Q ss_pred cEEEEEcCeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcccccccCccCCCCeEEEEEECCce
Q 003226 742 RVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRT 821 (837)
Q Consensus 742 ~VlaF~R~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s 821 (837)
.+++|+|+.+++||||+++.++.+|.|++..+|+|+.||++|...+||+.++++....++....+.+++.++.||+|+++
T Consensus 667 ~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~~l~VY~~~~~ 746 (757)
T KOG0470|consen 667 EVIVFERGPLLFVFNFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPVSLQVYIPSRT 746 (757)
T ss_pred heeeeccCCeEEEEEecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccCCeeeeEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999887777777788999999999999999
Q ss_pred EEEEEEecC
Q 003226 822 AVVYALADE 830 (837)
Q Consensus 822 ~~Vl~~~~~ 830 (837)
++||.....
T Consensus 747 a~vl~~~~~ 755 (757)
T KOG0470|consen 747 ATVLALLDT 755 (757)
T ss_pred ceEeeeccc
Confidence 999988654
No 4
>PLN02960 alpha-amylase
Probab=100.00 E-value=6e-117 Score=1031.72 Aligned_cols=654 Identities=43% Similarity=0.802 Sum_probs=577.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEeCC-cEEEEEeCCCcCEEEEEeecCCCCCCccccc--
Q 003226 158 LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGDFNNWNPNADIMT-- 234 (837)
Q Consensus 158 l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~-gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~-- 234 (837)
-+.|+++|++||+.+++++.+|.+++++|..||++|+.||+|++.+ ||.|++|||+|+.++|+||||+|+++.+.|.
T Consensus 82 ~~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g 161 (897)
T PLN02960 82 DRAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAREG 161 (897)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhhcc
Confidence 5789999999999999999999999999999999999999999875 8999999999999999999999999998765
Q ss_pred ---cCCCceEEEEeCCCC-CC-----------------------------------------------------------
Q 003226 235 ---QNEFGVWEIFLPNNA-DG----------------------------------------------------------- 251 (837)
Q Consensus 235 ---r~~~GvWei~ip~~~-~g----------------------------------------------------------- 251 (837)
|++.|+|+|.|+..+ +|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (897)
T PLN02960 162 YFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFIKNRLEVPAKLYEQ 241 (897)
T ss_pred cccccccceEEEEechhhhcCCCcchhhhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhhhccchhHHHHHHH
Confidence 899999999996542 00
Q ss_pred --------------------------------------------------------------------------------
Q 003226 252 -------------------------------------------------------------------------------- 251 (837)
Q Consensus 252 -------------------------------------------------------------------------------- 251 (837)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 321 (897)
T PLN02960 242 MFGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLEKKPPLPYWEETRK 321 (897)
T ss_pred hhCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhccCCCCcceeeeee
Confidence
Q ss_pred ---------CCCCCCCCEEEEEEeCCCCccccCCccceeeccCCCCCCCCcEEeCCCccccccccCCCCCCCCCceEEEE
Q 003226 252 ---------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEA 322 (837)
Q Consensus 252 ---------~~~~~~g~~yk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~IYE~ 322 (837)
.+.+.||++|+|+|++.++..+++||||+++...+....+..++|+|+....|.|++.+|..+.+++|||+
T Consensus 322 ~~~gw~~~~ip~~~hG~~Yky~v~~~~g~~~~vdpyA~~~qp~~~~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYEl 401 (897)
T PLN02960 322 GRKAWLKKYIPAIPHGSKYRVYFNTPDGPLERVPAWATYVLPDPDGKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYEC 401 (897)
T ss_pred cCCcEEEEEccCCCCCCEEEEEEEeCCCceEECCCcceeEeecCCCccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEE
Confidence 01368999999999987777778999999876655444456788898644579998877767789999999
Q ss_pred ecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE
Q 003226 323 HVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL 402 (837)
Q Consensus 323 hv~~f~~~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~ 402 (837)
|||+|+.++++|||++++++.|||||+|||||||||||++++.+.+|||++++||+|+++|||++|||+||++||++||+
T Consensus 402 Hvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~ 481 (897)
T PLN02960 402 HVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLL 481 (897)
T ss_pred ecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 99999988889999999977799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccc
Q 003226 403 VLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 403 VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
||||||+||++.++..++..|+|+...||+.+..+++..|+++.|||++++||+||+++++||++||||||||||+|++|
T Consensus 482 VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sM 561 (897)
T PLN02960 482 VFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSM 561 (897)
T ss_pred EEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeeccccee
Confidence 99999999999987678889999877788877778888999999999999999999999999999999999999999999
Q ss_pred cccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceeccccCCcccchhcchhhHHH
Q 003226 483 MYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADK 562 (837)
Q Consensus 483 ~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~ 562 (837)
+|.|+|. ..+.+.|.++++...|.+++.||+++|+.+++..|++++|||+.+++|.+|+|...||+||||+++|+++++
T Consensus 562 lY~d~g~-~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d 640 (897)
T PLN02960 562 LYTHNGF-ASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEM 640 (897)
T ss_pred eeeccCc-cccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHH
Confidence 9999886 456777777777678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-cchhhhhhhhHHhhc-cCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHH
Q 003226 563 WIELLKK-RDEDWKMGAIVHTMT-NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHK 640 (837)
Q Consensus 563 ~~~~l~~-~~~~~~~~~l~~~l~-~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k 640 (837)
++++++. ..+.|.+..+...+. ++...+++|+|+|||||+.+|++++...+.+.+++.+++.. +.+.|++++++
T Consensus 641 ~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~----~~~lRa~al~~ 716 (897)
T PLN02960 641 WLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVK----ELLLRGVSLHK 716 (897)
T ss_pred HHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccC----hhhhhhhhHHH
Confidence 9999985 346677777777776 56677889999999999999999999888888777766652 34567889999
Q ss_pred HHHHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHH
Q 003226 641 MIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHL 720 (837)
Q Consensus 641 ~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~L 720 (837)
++++++++++|.++|||||+|||+++|.++|+ ++|+.+|..++ ++|...+...++.|++|+|+|++|
T Consensus 717 ~~rllt~~~~Pg~pLlFMG~EFGh~e~~~~Pd-----------P~n~~tf~~s~--LdW~Ll~~~~h~~l~~f~rdL~~L 783 (897)
T PLN02960 717 MIRLITFTLGGSAYLNFMGNEFGHPERVEFPR-----------ASNNFSFSLAN--RRWDLLEDGVHAHLFSFDKALMAL 783 (897)
T ss_pred HHHHHHHHhCCCCCEeeCccccCChhhhhCcC-----------CCCcccccccc--CCcccccChhHHHHHHHHHHHHHH
Confidence 98877666554345779999999988778887 46777776665 566666666789999999999999
Q ss_pred HHHhccCCCCcEEEEeecCCCcEEEEEcCeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCccc-
Q 003226 721 EEKYGFMTSEHQYVSRKDQGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAEY- 799 (837)
Q Consensus 721 Rk~~~~L~~g~~~i~~~~~~~~VlaF~R~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~~- 799 (837)
|+++++|..+..|+.+.+.+++||||.|+.+|||+||+|..++.+|+|++|.+|+|+++||||+..|||.++++....+
T Consensus 784 r~~~paL~~g~~~i~~~d~~~~Viaf~R~~llvV~NFsp~~~~~~Y~vgvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~ 863 (897)
T PLN02960 784 DEKYLILSRGLPNIHHVNDTSMVISFTRGPLLFAFNFHPTNSYEEYEVGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQ 863 (897)
T ss_pred HhcChhhcCCcceeeeecCCCCEEEEEeCCeEEEEeCCCCCcCcCceECCCCCCcEEEEEeCchhhcCCCCccCCCccee
Confidence 9999999999999998888889999999999999999986678899999999999999999999999999988654333
Q ss_pred ccccCccCCCCeEEEEEECCceEEEEEEec
Q 003226 800 FSSEGWYDDRPHSFLVYAPSRTAVVYALAD 829 (837)
Q Consensus 800 ~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~~ 829 (837)
.+...++++++++++|+|||++++||++.+
T Consensus 864 ~t~~~~~~g~~~si~i~LPp~sa~v~k~~~ 893 (897)
T PLN02960 864 RTKSKRIDGLRNCLELTLPSRSAQVYKLAR 893 (897)
T ss_pred eccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 355667999999999999999999999864
No 5
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.7e-102 Score=909.35 Aligned_cols=585 Identities=25% Similarity=0.463 Sum_probs=496.7
Q ss_pred hcCchhhhhcccccCCcEEe----CCcEEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCC
Q 003226 182 YEGGLAAFSRGYEKFGFIRS----DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPH 257 (837)
Q Consensus 182 ~~g~l~~f~~~y~~lG~~~~----~~gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~ 257 (837)
+..+.+.+.+.|+.||||.. .+||+|+||||+|++|+|+||||+|+...++|.+.+.|+|+++||+.. +
T Consensus 113 ~~~~~g~~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~-------~ 185 (730)
T PRK12568 113 LQIAAGDGQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVE-------A 185 (730)
T ss_pred HHHhCCchhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCC-------C
Confidence 33344577889999999974 468999999999999999999999998899999889999999999754 4
Q ss_pred CCEEEEEEeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCccccccccCC-----C-C-CCCCCceEEEEecCCCCC
Q 003226 258 GSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP-----Q-P-KKPKSLRIYEAHVGMSST 329 (837)
Q Consensus 258 g~~yk~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~-~-~~~~~~~IYE~hv~~f~~ 329 (837)
|..|||+|.+.+|. ....|||++.....+.+ .+++.++. .|.|++. + + ...++++|||+|||+|+.
T Consensus 186 G~~YKYeI~~~~G~~~~k~DPYA~~~e~~p~~---asvV~~~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~ 259 (730)
T PRK12568 186 GARYKYAITAADGRVLLKADPVARQTELPPAT---ASVVPSAA---AFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRR 259 (730)
T ss_pred CCEEEEEEEcCCCeEeecCCCcceEeecCCCC---CeEEcCCC---CCCCCChhhhhcccccCCCCCcEEEEEEhHHhcC
Confidence 67999999887665 36789999998776654 57887753 4666543 1 1 235789999999999986
Q ss_pred C--CCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 003226 330 E--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 407 (837)
Q Consensus 330 ~--~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDv 407 (837)
. .+.++|++++++.|||||+|||||||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+
T Consensus 260 ~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 260 DGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4 34689999997678999999999999999999998889999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccccCCCCCCCcccccCC-CCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccc
Q 003226 408 VHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 486 (837)
Q Consensus 408 V~NH~s~~~~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~ 486 (837)
|+||++.+. .++..|+|+. .|.+.++ .+.+..|++..|||++|+||+||+++++||++||||||||+|++++|+|.+
T Consensus 340 V~nH~~~d~-~~l~~fdg~~-~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d 417 (730)
T PRK12568 340 VSAHFPDDA-HGLAQFDGAA-LYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRD 417 (730)
T ss_pred ccccCCccc-cccccCCCcc-ccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhc
Confidence 999999875 5678898864 4544443 366788998889999999999999999999999999999999999999998
Q ss_pred cCcccc-ccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceeccccCCcccchhcchhhHHHHHH
Q 003226 487 HGLQVA-FTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIE 565 (837)
Q Consensus 487 ~g~~~~-f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~ 565 (837)
++..++ |.. +.+|+.+|.++++||+++|+.+++.+|++++|||+++.+|.++++...||+|||++|+|+|++++++
T Consensus 418 ~~r~~g~w~p---n~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~ 494 (730)
T PRK12568 418 YGRAEGEWVP---NAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLH 494 (730)
T ss_pred cccccccccc---cccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHH
Confidence 877652 322 3467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc--chhhhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHH
Q 003226 566 LLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIR 643 (837)
Q Consensus 566 ~l~~~--~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~ 643 (837)
+++.. .+.+....+...+.. .+.++.| +..|||++..|++++.. . |.++. .+..+.+|++.
T Consensus 495 y~~~dp~~r~~~h~~ltf~~~y-~~~e~fv-lp~SHDEvvhgk~sl~~-k--------mpGd~------~~k~a~lR~~~ 557 (730)
T PRK12568 495 YMQRDPAERAHHHSQLTFGLVY-AFSERFV-LPLSHDEVVHGTGGLLG-Q--------MPGDD------WRRFANLRAYL 557 (730)
T ss_pred HHhhCchhhhhhhhhhhhhhhh-hhhccEe-ccCCCcccccCchhhhh-c--------CCCCH------HHHHHHHHHHH
Confidence 99963 345555666665543 4555555 78999999999887642 2 33331 24566778888
Q ss_pred HHHHhCCCCceEeccccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHH
Q 003226 644 LVTMGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEE 722 (837)
Q Consensus 644 ~l~ltlpG~p~L~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk 722 (837)
++|||+||.| |+|||+|||+. +|.+ ..+++|...+++.++.+.+|+|+|++||+
T Consensus 558 ~~~~~~PGkk-LlFmG~Efgq~~ew~~------------------------~~~ldW~ll~~~~h~~~~~~~~dLn~ly~ 612 (730)
T PRK12568 558 ALMWAHPGDK-LLFMGAEFGQWADWNH------------------------DQSLDWHLLDGARHRGMQQLVGDLNAALR 612 (730)
T ss_pred HHHHhCCCcc-eeeCchhhCCcccccC------------------------CCCccccccCChhHHHHHHHHHHHHHHHH
Confidence 9999999996 55999999994 6642 24689998887888999999999999999
Q ss_pred HhccCC------CCcEEEEeecCCCcEEEEEc--C-----eEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCC
Q 003226 723 KYGFMT------SEHQYVSRKDQGDRVIVFER--G-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGG 789 (837)
Q Consensus 723 ~~~~L~------~g~~~i~~~~~~~~VlaF~R--~-----~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg 789 (837)
++|+|. .|++|+.+.+.+++|+||.| + .+|||+||+| ..+.+|+|++|.+|+|+++||||+..|||
T Consensus 613 ~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~-~~~~~Y~ig~p~~G~~~eilNsd~~~ygG 691 (730)
T PRK12568 613 RTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTP-QPHHDYRVGVPRAGGWREILNTDSAHYGG 691 (730)
T ss_pred hChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCC-CCccCeEECCCCCCeEEEEEcCchhhhCC
Confidence 999983 67899999999999999999 1 2999999997 67899999999999999999999999999
Q ss_pred ccccCCCcccccccCccCCCCeEEEEEECCceEEEEEEe
Q 003226 790 YKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~ 828 (837)
++..+.+ .+.+.+.+|++++++++|+|||++++||++.
T Consensus 692 ~~~~n~~-~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 692 SNLGNSG-RLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred CCcCCCC-ceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 9876644 3566677899999999999999999999875
No 6
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.7e-101 Score=904.47 Aligned_cols=576 Identities=27% Similarity=0.508 Sum_probs=483.0
Q ss_pred hhhcccccCCcEEeCC----cEEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 003226 188 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 263 (837)
Q Consensus 188 ~f~~~y~~lG~~~~~~----gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~ 263 (837)
.+...|+.||+|.... ||+||||||+|++|+|+||||+|+...++|.+.+.|+|+++||+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~-------~g~~Yky 91 (639)
T PRK14706 19 DLVRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGAR-------PGQRYKF 91 (639)
T ss_pred cccchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCC-------CCCEEEE
Confidence 4567899999998643 7999999999999999999999998889999988999999999753 5779999
Q ss_pred EEeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCccccccccCCCC------CCCCCceEEEEecCCCCCC--CCCC
Q 003226 264 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP------KKPKSLRIYEAHVGMSSTE--PIIN 334 (837)
Q Consensus 264 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~IYE~hv~~f~~~--~~~G 334 (837)
+|+++.|. ..+.|||++++...+.. .++++++ .|.|++..+ ...++++|||+|||+|+.. +..|
T Consensus 92 ~I~~~~g~~~~~~DPYa~~~~~~~~~---~svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ 164 (639)
T PRK14706 92 RVTGAAGQTVDKMDPYGSFFEVRPNT---ASIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFL 164 (639)
T ss_pred EEECCCCCEEeccCcceEEEecCCCC---ceEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCcc
Confidence 99987654 46899999998876654 6888876 377875432 1235799999999999753 3468
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCC
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
+|+++++..+||||+|||||||||||+|++..++|||++++||+|+++|||++|||+||++||++||+||||+|+||++.
T Consensus 165 ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~ 244 (639)
T PRK14706 165 NYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPT 244 (639)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCc
Confidence 99999964459999999999999999999998999999999999999999999999999999999999999999999998
Q ss_pred CccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCcccccc
Q 003226 415 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 494 (837)
Q Consensus 415 ~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 494 (837)
+. .++..|||+..++|.....+++..|++..||+++++||+||+++++||++||||||||||++++|+|.+++.. .|
T Consensus 245 ~~-~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~-~~- 321 (639)
T PRK14706 245 DE-SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRT-EW- 321 (639)
T ss_pred ch-hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcc-cc-
Confidence 75 5778889876443444445778889999999999999999999999999999999999999999999887763 23
Q ss_pred CCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceeccccCCcccchhcchhhHHHHHHHHhhcchhh
Q 003226 495 GNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW 574 (837)
Q Consensus 495 ~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~~~ 574 (837)
..+++|+..|.+++.||+++|+.+++.+|++++|||+++.+|.++++... |+|||++|+|.|++.++++++.. ..|
T Consensus 322 --~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~-~~~ 397 (639)
T PRK14706 322 --VPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQD-PLW 397 (639)
T ss_pred --cccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccC-chh
Confidence 46678999999999999999999999999999999999999999999875 99999999999999999888743 222
Q ss_pred hh---hhhHHhhccCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCC
Q 003226 575 KM---GAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGG 651 (837)
Q Consensus 575 ~~---~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG 651 (837)
.. ..+.... ...+.++.| |++|||+++++++++.. +|..+. ....+..|++.+++||+||
T Consensus 398 r~~~~~~lt~~~-~y~~~e~~i-l~~SHDev~~~k~sl~~-k~~g~~--------------~~~~a~~r~~~~~~~t~PG 460 (639)
T PRK14706 398 RKYHHHKLTFFN-VYRTSENYV-LAISHDEVVHLKKSMVM-KMPGDW--------------YTQRAQYRAFLAMMWTTPG 460 (639)
T ss_pred hhhchhccchhh-hhhccccEe-cCCCCccccCCccchHh-HcCCCH--------------HHHHHHHHHHHHHHHhCCC
Confidence 22 1111111 123344444 88999999998877642 222221 1335667888899999999
Q ss_pred CceEeccccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCC--
Q 003226 652 EAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT-- 728 (837)
Q Consensus 652 ~p~L~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~-- 728 (837)
+|+| |||+|||+. +|. ++++++|...+...++.|++|+|+||+||+++++|.
T Consensus 461 ~pLi-FmG~EfG~~~ew~------------------------~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~g 515 (639)
T PRK14706 461 KKLL-FMGQEFAQGTEWN------------------------HDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRG 515 (639)
T ss_pred CcEE-EeccccCCCCCCC------------------------cccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhC
Confidence 9866 999999984 431 456789987765566789999999999999999994
Q ss_pred ----CCcEEEEeecCCCcEEEEEcC------eEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcc
Q 003226 729 ----SEHQYVSRKDQGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAE 798 (837)
Q Consensus 729 ----~g~~~i~~~~~~~~VlaF~R~------~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~ 798 (837)
.|++|+.+.+.+++|+||.|. .+|||+||+| ..+.+|+|++|.+|+|+++||||+..|||+++.+. .
T Consensus 516 d~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~-~~~~~y~ig~p~~g~~~~i~nsd~~~~gG~g~~n~--~ 592 (639)
T PRK14706 516 DKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP-VYREQYRIGVPQGGEYRVLLSTDDGEYGGFGTQQP--D 592 (639)
T ss_pred CCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC-CCcCCeEECCCCCCeEEEEEcCCccccCCCCCCCC--c
Confidence 457888888888899999993 2999999997 67899999999999999999999999999998764 3
Q ss_pred cccccCccCCCCeEEEEEECCceEEEEEEec
Q 003226 799 YFSSEGWYDDRPHSFLVYAPSRTAVVYALAD 829 (837)
Q Consensus 799 ~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~~ 829 (837)
+.+...+|+++++++.|+|||++++||++..
T Consensus 593 ~~~~~~~~~g~~~si~i~lp~~~~~~~~~~~ 623 (639)
T PRK14706 593 LMASQEGWHGQPHSLSLNLPPSSVLILEFVG 623 (639)
T ss_pred eeccccccCCCccEEEEEeCCcEEEEEEECC
Confidence 5666778999999999999999999999874
No 7
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.6e-100 Score=933.17 Aligned_cols=585 Identities=28% Similarity=0.487 Sum_probs=496.8
Q ss_pred HHhhcCchhhhhcccccCCcEEe--------CCcEEEEEeCCCcCEEEEEeecCCCCCCcccccc-CCCceEEEEeCCCC
Q 003226 179 IDKYEGGLAAFSRGYEKFGFIRS--------DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLPNNA 249 (837)
Q Consensus 179 i~~~~g~l~~f~~~y~~lG~~~~--------~~gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r-~~~GvWei~ip~~~ 249 (837)
++.+..+.+.+.+.|+.||||.. .+||+|+||||+|++|+|+||||+|+...++|.+ .+.|+|+++||+..
T Consensus 606 ~d~~lf~~g~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~ 685 (1224)
T PRK14705 606 VDLHLIGEGRHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVV 685 (1224)
T ss_pred HHHHHHhCCchhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCC
Confidence 33344445588899999999973 3489999999999999999999999998899987 46799999999865
Q ss_pred CCCCCCCCCCEEEEEEeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCccccccccCCC-----C---CCCCCceEE
Q 003226 250 DGSPPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ-----P---KKPKSLRIY 320 (837)
Q Consensus 250 ~g~~~~~~g~~yk~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~---~~~~~~~IY 320 (837)
. |..|||+|.+.+|. ..+.|||++.....+.+ .|+|+|+. |.|++.. . ...++++||
T Consensus 686 ~-------G~~Yky~i~~~~g~~~~k~DPyA~~~e~~p~~---aS~V~d~~----~~w~d~~W~~~r~~~~~~~~p~~IY 751 (1224)
T PRK14705 686 A-------GACYKFEILTKAGQWVEKADPLAFGTEVPPLT---ASRVVEAS----YAFKDAEWMSARAERDPHNSPMSVY 751 (1224)
T ss_pred C-------CCEEEEEEEcCCCcEEecCCccccccccCCCC---CeEEeCCC----CCcCChhhhhccccCCCCcCCcEEE
Confidence 4 66999999987665 46789999988776654 58999973 6665432 1 123689999
Q ss_pred EEecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcC
Q 003226 321 EAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 400 (837)
Q Consensus 321 E~hv~~f~~~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~G 400 (837)
|+|||+|+. .++|++++++.|||||+|||||||||||+|++..+||||++++||+|+++|||++|||+||++||++|
T Consensus 752 EvHvgsf~~---~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~G 828 (1224)
T PRK14705 752 EVHLGSWRL---GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAG 828 (1224)
T ss_pred EEEeccccc---CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCC
Confidence 999999987 37999999766899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCCCccccccCCCCCCCcccccCC-CCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEeccc
Q 003226 401 LLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 401 I~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
|+||||+|+||++.+. +++..|||+. .|++.++ .+.+..|++..|||++++||+||+++++||++||||||||||+|
T Consensus 829 I~VILD~V~nH~~~d~-~~l~~fdg~~-~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav 906 (1224)
T PRK14705 829 IGVLLDWVPAHFPKDS-WALAQFDGQP-LYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAV 906 (1224)
T ss_pred CEEEEEeccccCCcch-hhhhhcCCCc-ccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeeh
Confidence 9999999999998875 6788899874 4555544 47788999999999999999999999999999999999999999
Q ss_pred ccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceeccccCCcccchhcchhh
Q 003226 480 TSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAI 559 (837)
Q Consensus 480 ~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~ 559 (837)
++|+|.|++...+.+ ..+.+|+++|.+++.||+++|+.|++.+|++++|||+++.+|.+++|...||+||||+|||+|
T Consensus 907 ~~mly~Dysr~~g~w--~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgw 984 (1224)
T PRK14705 907 ASMLYLDYSREEGQW--RPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGW 984 (1224)
T ss_pred hhhhhcccccccccc--cccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchh
Confidence 999999887655322 246788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc--chhhhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHH
Q 003226 560 ADKWIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIA 637 (837)
Q Consensus 560 ~d~~~~~l~~~--~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 637 (837)
+++++++++.. .+.|....+...+.. .+.++.+ +..|||++..|++++. ..|++++++ ..+
T Consensus 985 mhd~l~Y~~~dp~~r~~~~~~ltf~~~y-a~~e~fv-l~~SHDevvhgk~sl~-~km~Gd~~~--------------k~a 1047 (1224)
T PRK14705 985 MHDSLKYASEDPINRKWHHGTITFSLVY-AFTENFL-LPISHDEVVHGKGSML-RKMPGDRWQ--------------QLA 1047 (1224)
T ss_pred hHHHHHHhhhCcchhhcccchHHHHHHH-HhhcCEe-cccccccccccchhHH-HhCCCcHHH--------------HHH
Confidence 99999998853 345666666666654 3455544 6789999988877653 344444443 345
Q ss_pred HHHHHHHHHHhCCCCceEeccccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHH
Q 003226 638 LHKMIRLVTMGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRA 716 (837)
Q Consensus 638 ~~k~a~~l~ltlpG~p~L~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~ 716 (837)
.+|++.+++|++||+| |+|||+|||+. +|. ...+++|...++..++.++.|+|+
T Consensus 1048 ~lR~~~a~~~~~PGk~-LlFMG~Efgq~~ew~------------------------~~~~LdW~ll~~~~h~~~~~~~rd 1102 (1224)
T PRK14705 1048 NLRAFLAYQWAHPGKQ-LIFMGTEFGQEAEWS------------------------EQHGLDWFLADIPAHRGIQLLTKD 1102 (1224)
T ss_pred HHHHHHHHHHhcCCcC-EEECccccCCCCCcc------------------------ccccCCCcccCChhhHHHHHHHHH
Confidence 5688889999999997 55999999995 663 224689998887788999999999
Q ss_pred HHHHHHHhccCC------CCcEEEEeecCCCcEEEEEc-----CeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCC
Q 003226 717 MQHLEEKYGFMT------SEHQYVSRKDQGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYP 785 (837)
Q Consensus 717 Li~LRk~~~~L~------~g~~~i~~~~~~~~VlaF~R-----~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~ 785 (837)
||+||+++|+|. .|++|+.+.+.+++||+|.| +.+|||+||+| ..+.+|+|++|.+|.|+++||||+.
T Consensus 1103 Ln~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp-~~~~~y~igvp~~G~y~eilnsd~~ 1181 (1224)
T PRK14705 1103 LNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSG-GPHKGYTLGVPAAGAWTEVLNTDHE 1181 (1224)
T ss_pred HHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCC-CCccCceECCCCCCeEEEEEeCchh
Confidence 999999999984 46889998888899999999 24999999997 6888999999999999999999999
Q ss_pred ccCCccccCCCcccccccCccCCCCeEEEEEECCceEEEEEEe
Q 003226 786 LFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 786 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~ 828 (837)
.|||++..+.+ ...+...+|+++++++.|+|||++++||++.
T Consensus 1182 ~ygGsg~~n~~-~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1182 TYGGSGVLNPG-SLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred hcCCCCcCCCC-ceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 99999987644 3455667899999999999999999999875
No 8
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.4e-94 Score=854.39 Aligned_cols=583 Identities=29% Similarity=0.532 Sum_probs=475.1
Q ss_pred hhhcccccCCcEEeCC----cEEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 003226 188 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 263 (837)
Q Consensus 188 ~f~~~y~~lG~~~~~~----gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~ 263 (837)
++.+.|+.||+|...+ ||+||+|||+|++|+|+||||+|+...++|.+.+.|+|++++|+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~-------~g~~Y~y 91 (633)
T PRK12313 19 EHFRLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAK-------EGQLYKY 91 (633)
T ss_pred CcccchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCC-------CCCEEEE
Confidence 5567799999999877 8999999999999999999999998889999988999999999643 4679999
Q ss_pred EEeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCccccccccCCCC--------CCCCCceEEEEecCCCCCC--CC
Q 003226 264 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP--------KKPKSLRIYEAHVGMSSTE--PI 332 (837)
Q Consensus 264 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~~IYE~hv~~f~~~--~~ 332 (837)
++...+|. .++.|||++...+.+.. .++++|++ .|.|++..+ ....+++|||+|||+|+.+ ++
T Consensus 92 ~v~~~~g~~~~~~DPya~~~~~~~~~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~ 165 (633)
T PRK12313 92 HISRQDGYQVEKIDPFAFYFEARPGT---ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGR 165 (633)
T ss_pred EEECCCCeEEecCCCceEEEecCCCC---ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCC
Confidence 99765554 47889999988776544 68999985 577876431 1226799999999999754 56
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 333 ~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
.|+|++++++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||+
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~ 245 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHF 245 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 79999999544699999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCcccc
Q 003226 413 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVA 492 (837)
Q Consensus 413 s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~ 492 (837)
+.++ .++..|+++...++.....+++..|+..+||++||+||++|+++++||++||||||||||+|++|++.+++....
T Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~ 324 (633)
T PRK12313 246 PKDD-DGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGE 324 (633)
T ss_pred CCCc-ccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccC
Confidence 9875 456677776432333333456668999999999999999999999999999999999999999998877662222
Q ss_pred ccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceeccccCCcccchhcchhhHHHHHHHHhhcc-
Q 003226 493 FTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD- 571 (837)
Q Consensus 493 f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~- 571 (837)
|.+ +.++...+.++++||+++++.|++.+|++++|||+++.+|.++.+...+|+|||++|++.+++.++.+++...
T Consensus 325 ~~~---~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~ 401 (633)
T PRK12313 325 WTP---NKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPI 401 (633)
T ss_pred cCC---cccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCcc
Confidence 432 2345556778899999999999999999999999999999999999999999999999999999888886431
Q ss_pred -hhhhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCC
Q 003226 572 -EDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG 650 (837)
Q Consensus 572 -~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlp 650 (837)
..+....+...+.. .+.++. ++++|||+++.|++++...+ .++++ ...++.|++.+++||+|
T Consensus 402 ~~~~~~~~~~~~~~~-~~~e~~-~l~~sHD~~~~g~~~~~~~~-~g~~~--------------~~~~~~r~~~~~~~t~p 464 (633)
T PRK12313 402 YRKYHHNLLTFSFMY-AFSENF-VLPFSHDEVVHGKKSLMHKM-PGDRW--------------QQFANLRLLYTYMITHP 464 (633)
T ss_pred ccccccccchHHHhh-hhhccc-ccCCCCcccccCCccHHHhc-CCCHH--------------HHHHHHHHHHHHHHhCC
Confidence 22322222222221 222333 47789999988877765432 22222 23567788899999999
Q ss_pred CCceEeccccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCC-
Q 003226 651 GEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT- 728 (837)
Q Consensus 651 G~p~L~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~- 728 (837)
|+|+| |||+|+|+. +|. .+++++|...+...++.|++|+|+||+||+++|+|+
T Consensus 465 G~Pli-f~G~E~g~~~~~~------------------------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~ 519 (633)
T PRK12313 465 GKKLL-FMGSEFGQFLEWK------------------------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWE 519 (633)
T ss_pred CCcEe-ecccccccCccCC------------------------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhc
Confidence 99876 999999995 431 125788987665567899999999999999999996
Q ss_pred -----CCcEEEEeecCCCcEEEEEcCe------EEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCc
Q 003226 729 -----SEHQYVSRKDQGDRVIVFERGN------LVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNA 797 (837)
Q Consensus 729 -----~g~~~i~~~~~~~~VlaF~R~~------llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~ 797 (837)
.++.++...+.+++|+||.|.. +|||+||++ ....+|+|++|.+|+|+++||||+..|||+++.+..
T Consensus 520 ~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~-~~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~~~~~- 597 (633)
T PRK12313 520 LDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTP-VEREDYRIGVPVAGIYEEILNTDSEEFGGSGKGNNG- 597 (633)
T ss_pred ccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCC-CcccceeECCCCCCeEEEEEcCCchhcCCCCcCCCC-
Confidence 3467776655567899999943 999999996 567789999999999999999999999999986533
Q ss_pred ccccccCccCCCCeEEEEEECCceEEEEEEecCC
Q 003226 798 EYFSSEGWYDDRPHSFLVYAPSRTAVVYALADEE 831 (837)
Q Consensus 798 ~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~~~~ 831 (837)
.+.+....|+++++++.|+|||++++||++.+..
T Consensus 598 ~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~~~ 631 (633)
T PRK12313 598 TVKAQEGPWHGRPQSLTLTLPPLGALVLKPKRRL 631 (633)
T ss_pred ceeecccccCCCCCEEEEEeCCCEEEEEEEcccc
Confidence 4555666799999999999999999999997654
No 9
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.4e-94 Score=863.03 Aligned_cols=609 Identities=28% Similarity=0.502 Sum_probs=491.3
Q ss_pred CCCcceecCCCCcchHHHHHHHHHHHHHHHHHHH-hhcCchhhhhcccccCCcEEeC----CcEEEEEeCCCcCEEEEEe
Q 003226 147 AGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDID-KYEGGLAAFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIG 221 (837)
Q Consensus 147 ~~~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~-~~~g~l~~f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~L~g 221 (837)
+|..+.+.|||-.+. .+.. .++. ..+| ++.+.|+.||+|... +||+||+|||+|++|+|+|
T Consensus 84 ~g~~~~k~DPyaf~~--~~~~---------~~~~~~~~g---~~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~g 149 (726)
T PRK05402 84 GGGEQLIDDPYRFGP--LLGE---------LDLYLFGEG---THLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVG 149 (726)
T ss_pred CCceeEeccccccCC--CCCH---------HHHHHHhCC---ccchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEE
Confidence 556688999998754 1111 1111 1233 678889999999875 7899999999999999999
Q ss_pred ecCCCCCCccccccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCC
Q 003226 222 DFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPP 299 (837)
Q Consensus 222 Dfn~w~~~~~~m~r~-~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 299 (837)
|||+|+...++|++. +.|+|+++||+. ++|..|+|++...+|. .+..|||++.+...+.. .++++|++
T Consensus 150 dfn~w~~~~~~m~~~~~~Gvw~~~i~~~-------~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~---~s~v~d~~ 219 (726)
T PRK05402 150 DFNGWDGRRHPMRLRGESGVWELFIPGL-------GEGELYKFEILTADGELLLKADPYAFAAEVRPAT---ASIVADLS 219 (726)
T ss_pred EcCCCCCccccceEcCCCCEEEEEeCCC-------CCCCEEEEEEeCCCCcEeecCCCceEEEecCCCC---cEEEeCCc
Confidence 999999888899998 889999999974 3577999999876654 46889999998876654 58999984
Q ss_pred ccccccccCCCC--------CCCCCceEEEEecCCCCCC---CCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCC
Q 003226 300 EEEKYVFQHPQP--------KKPKSLRIYEAHVGMSSTE---PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYAS 368 (837)
Q Consensus 300 ~~~~~~~~~~~~--------~~~~~~~IYE~hv~~f~~~---~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s 368 (837)
.|.|++..+ ...++++|||+|||+|+.+ ++.|+|+++++..|||||+||||+||||||++++...+
T Consensus 220 ---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~ 296 (726)
T PRK05402 220 ---QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGS 296 (726)
T ss_pred ---cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCC
Confidence 577875532 1346899999999999853 56799999995335999999999999999999998889
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCC-CCCcccCCCcCC
Q 003226 369 FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLF 447 (837)
Q Consensus 369 ~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~l 447 (837)
|||+++|||+|+++|||++|||+||++||++||+||||+|+||++.++ .++..|+++. .|++.+. .+.+..|++.+|
T Consensus 297 ~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~ 374 (726)
T PRK05402 297 WGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDA-HGLARFDGTA-LYEHADPREGEHPDWGTLIF 374 (726)
T ss_pred CCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-cchhccCCCc-ceeccCCcCCccCCCCCccc
Confidence 999999999999999999999999999999999999999999998875 4677788764 4544333 356778999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCe
Q 003226 448 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEA 527 (837)
Q Consensus 448 n~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~ 527 (837)
|+++|+||++|+++++||++||||||||||++.+|++.+++...+.+ ..+.+++..+.+++.||+++++.+++.+|++
T Consensus 375 n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~ 452 (726)
T PRK05402 375 NYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGRENLEAIDFLRELNAVVHEEFPGA 452 (726)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCcCCHHHHHHHHHHHHHHHHHCCCe
Confidence 99999999999999999999999999999999999988777654322 2345566677889999999999999999999
Q ss_pred EEEEeccCCCCCceeccccCCcccchhcchhhHHHHHHHHhhc--chhhhhhhhHHhhccCcccccceecccCccccccc
Q 003226 528 VSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVG 605 (837)
Q Consensus 528 ~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~--~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g 605 (837)
++|||+++.++.++.+...+|+|||+.|++.+++.++.+++.. ...+....+...+.. .+.++. .+++|||+++.+
T Consensus 453 ~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~-~l~~sHD~~~~g 530 (726)
T PRK05402 453 LTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLY-AYSENF-VLPLSHDEVVHG 530 (726)
T ss_pred EEEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhH-hhhccc-cCCCCCceeeeC
Confidence 9999999999999999989999999999999998888887642 122222222221211 222333 477899999988
Q ss_pred ccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCCCCCcCCC
Q 003226 606 DKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPG 685 (837)
Q Consensus 606 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~~~g 685 (837)
++++... +..+++ ...+..|++.+++||+||+|+| |||||+|+.+..+
T Consensus 531 ~~~l~~~-~~g~~~--------------~~~~~lrl~~~~~~t~pG~Pli-f~G~E~g~~~~~~---------------- 578 (726)
T PRK05402 531 KGSLLGK-MPGDDW--------------QKFANLRAYYGYMWAHPGKKLL-FMGGEFGQGREWN---------------- 578 (726)
T ss_pred cccHHhh-CCCCHH--------------HHHHHHHHHHHHHHHCCCcCEe-eCchhcCCCCCCC----------------
Confidence 8776432 222211 2356778899999999999876 9999999975211
Q ss_pred CCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCC------CcEEEEeecCCCcEEEEEcC------eEEE
Q 003226 686 NNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS------EHQYVSRKDQGDRVIVFERG------NLVF 753 (837)
Q Consensus 686 n~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~------g~~~i~~~~~~~~VlaF~R~------~llv 753 (837)
.+++++|...+...++.+++|+|+|++||+++++|+. ++.|+...+.+++|+||.|. .+||
T Consensus 579 -------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlv 651 (726)
T PRK05402 579 -------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLV 651 (726)
T ss_pred -------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEE
Confidence 2367899876555678999999999999999999963 46677666667789999992 4999
Q ss_pred EEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcccccccCccCCCCeEEEEEECCceEEEEEEec
Q 003226 754 VFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALAD 829 (837)
Q Consensus 754 v~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~~ 829 (837)
|+||++ ....+|+|++|.+|+|+++||||+..|||++.++.. .+.+.+.+|+++++++.|+|||++++||++..
T Consensus 652 v~N~~~-~~~~~y~i~~p~~g~~~~ilnsd~~~~gg~~~~~~~-~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 652 VCNFTP-VPRHDYRLGVPQAGRWREVLNTDAEHYGGSNVGNGG-GVHAEEVPWHGRPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred EEeCCC-CcccceEECCCCCCeEEEEEcCcchhhCCCCCCCCC-ceeccccccCCCCCEEEEEeCCCEEEEEEEcC
Confidence 999995 566789999998999999999999999999987644 56666778999999999999999999999854
No 10
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=2.3e-93 Score=843.09 Aligned_cols=578 Identities=29% Similarity=0.517 Sum_probs=465.4
Q ss_pred hhhcccccCCcEEeC----CcEEEEEeCCCcCEEEEEeecCCCCCCccccccCC-CceEEEEeCCCCCCCCCCCCCCEEE
Q 003226 188 AFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNE-FGVWEIFLPNNADGSPPIPHGSRVK 262 (837)
Q Consensus 188 ~f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~-~GvWei~ip~~~~g~~~~~~g~~yk 262 (837)
++...|+.||+|... +|++||+|||+|++|+|++|||+|+...++|.+.+ .|+|+++||+.. +|..|+
T Consensus 9 ~~~~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~-------~g~~Y~ 81 (613)
T TIGR01515 9 SHFRSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIG-------EGELYK 81 (613)
T ss_pred ccCChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCC-------CCCEEE
Confidence 566779999999986 68999999999999999999999988888998874 899999999753 577999
Q ss_pred EEEeCCCCc-cccCCccceeeccCCCCCCCCcEEeCCCc--cccccccCCCC-C--CCCCceEEEEecCCCCCCCCCCCH
Q 003226 263 IHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHPQP-K--KPKSLRIYEAHVGMSSTEPIINTY 336 (837)
Q Consensus 263 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~-~--~~~~~~IYE~hv~~f~~~~~~G~~ 336 (837)
|+|...+|. ....|||++.....+.. .++++|++. +.+..|+..++ . ...+++|||+|||+|+.+ |+|
T Consensus 82 y~v~~~~g~~~~~~DPYA~~~~~~~~~---~s~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~ 155 (613)
T TIGR01515 82 YEIVTNNGEIRLKADPYAFYAEVRPNT---ASLVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSY 155 (613)
T ss_pred EEEECCCCcEEEeCCCCEeeeccCCCC---cEEEECCccCccCchhhhhcccccCcccCCceEEEEehhhccCC---CCH
Confidence 999876554 46889999987765543 588999752 12223433322 1 224789999999999765 999
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCc
Q 003226 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 416 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~ 416 (837)
++|+++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+.
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 99995335999999999999999999998889999999999999999999999999999999999999999999999875
Q ss_pred cccccCCCCCCCcccccCC-CCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccC
Q 003226 417 LDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG 495 (837)
Q Consensus 417 ~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~ 495 (837)
..+..|++.. .|++... .+.++.|+.++||+++|+||++|+++++||++||||||||||+|++|++.+++...+...
T Consensus 236 -~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~ 313 (613)
T TIGR01515 236 -HGLAEFDGTP-LYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS 313 (613)
T ss_pred -chhhccCCCc-ceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc
Confidence 4566677753 4444433 355678999999999999999999999999999999999999999999887776543211
Q ss_pred CcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceeccccCCcccchhcchhhHHHHHHHHhhcc--hh
Q 003226 496 NYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD--ED 573 (837)
Q Consensus 496 ~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~--~~ 573 (837)
.+.++...+.+++.||+++++.|++.+|++++|||+++.++.++.+...+|+|||++|++.+++.++.+++... ..
T Consensus 314 --~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~ 391 (613)
T TIGR01515 314 --PNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQ 391 (613)
T ss_pred --ccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHh
Confidence 12345566788999999999999999999999999999999999999999999999999999998888875321 11
Q ss_pred hhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCc
Q 003226 574 WKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEA 653 (837)
Q Consensus 574 ~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p 653 (837)
+....+...+. ..+.++.+ +++|||+++.|++++... |.+++ ....++.|++.+++||+||+|
T Consensus 392 ~~~~~~~~~~~-~~~~e~~~-~~~sHD~~~~g~~~i~~~---------~~g~~------~~~~~~~r~~~~~~~t~pG~p 454 (613)
T TIGR01515 392 YHHQLITFSML-YAFSENFV-LPLSHDEVVHGKKSLLNK---------MPGDY------WQKFANYRALLGYMWAHPGKK 454 (613)
T ss_pred hccccccHHHH-HHhhhccc-cCCCCCCcccCcccHHHh---------CCCch------HHHHHHHHHHHHHHHhCCCCC
Confidence 11111111111 12223333 789999998888776532 22221 123567788899999999998
Q ss_pred eEeccccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCC----
Q 003226 654 YLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT---- 728 (837)
Q Consensus 654 ~L~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~---- 728 (837)
+| |||+|+|+. +|. .+++++|...+...++.+++|+|+||+||+++|+|+
T Consensus 455 li-f~G~E~g~~~~~~------------------------~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~ 509 (613)
T TIGR01515 455 LL-FMGSEFAQGSEWN------------------------DTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDF 509 (613)
T ss_pred EE-EcchhcCcCCCCC------------------------CCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCC
Confidence 66 999999994 442 124788986666678899999999999999999995
Q ss_pred --CCcEEEEeecCCCcEEEEEcC------eEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcccc
Q 003226 729 --SEHQYVSRKDQGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAEYF 800 (837)
Q Consensus 729 --~g~~~i~~~~~~~~VlaF~R~------~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~ 800 (837)
.+++|+...+.+++|+||.|. .++||+||++ ....+|+|++|.+|+|+++|||++..|||.++.+... ..
T Consensus 510 ~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~-~~~~~Y~i~~p~~g~~~~il~Sd~~~~gG~g~~~~~~-~~ 587 (613)
T TIGR01515 510 DPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTP-VVRHQYRVGVPQPGQYREVLNSDSETYGGSGQGNKGP-LS 587 (613)
T ss_pred CCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCC-CCccceEeCCCCCCeEEEEEeCChhhcCCCCcCCCCc-ee
Confidence 356778776667789999992 5999999996 6778999999988999999999999999999887553 45
Q ss_pred cccCccCCCCeEEEEEECCceEEEEE
Q 003226 801 SSEGWYDDRPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 801 ~~~~~~~~~~~~~~l~Lp~~s~~Vl~ 826 (837)
+....|+++++++.|+|||++++||+
T Consensus 588 ~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 588 AEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred ccccccCCCCCEEEEEeCCcEEEEeC
Confidence 55667999999999999999999985
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-91 Score=802.83 Aligned_cols=581 Identities=30% Similarity=0.497 Sum_probs=480.7
Q ss_pred hhhhcccccCCcEEeCC---cEEEEEeCCCcCEEEEEeecCCCCCCccccccC-CCceEEEEeCCCCCCCCCCCCCCEEE
Q 003226 187 AAFSRGYEKFGFIRSDT---GITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVK 262 (837)
Q Consensus 187 ~~f~~~y~~lG~~~~~~---gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~-~~GvWei~ip~~~~g~~~~~~g~~yk 262 (837)
....+.|+.||||..+. |++|+||||+|+.|+|+||||+|+...++|... ++|+|++|||+... |.+||
T Consensus 17 ~~~~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~-------G~~Yk 89 (628)
T COG0296 17 GTHLRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPP-------GTRYK 89 (628)
T ss_pred ccchhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCC-------CCeEE
Confidence 35566789999998643 599999999999999999999999988888743 88999999997544 67999
Q ss_pred EEEeCCCCcc-ccCCccceeeccCCCCCCCCcEEeCCCccccccccCC----CC--CCCCCceEEEEecCCCCCCCCCCC
Q 003226 263 IHMDTPSGIK-DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP----QP--KKPKSLRIYEAHVGMSSTEPIINT 335 (837)
Q Consensus 263 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~--~~~~~~~IYE~hv~~f~~~~~~G~ 335 (837)
|++.+++|.. ...|||+++....+.+ .|+++|++ .|.|++. +. +..++++|||+|||+|+.+ ..-+
T Consensus 90 y~l~~~~g~~~~~~DP~a~~~~~~p~~---aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~ 162 (628)
T COG0296 90 YELIDPSGQLRLKADPYARRQEVGPHT---ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLG 162 (628)
T ss_pred EEEeCCCCceeeccCchhhccCCCCCC---cceecCCC---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcC
Confidence 9999998853 5678999888777766 68999985 3777632 22 2347999999999999985 5555
Q ss_pred HHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 336 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
+.++++++|||||+||||||+||||.|||++.|||||++.||||+++||||+|||+|||+||++||.||||+|+||++++
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d 242 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD 242 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC
Confidence 66666689999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccC
Q 003226 416 VLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG 495 (837)
Q Consensus 416 ~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~ 495 (837)
. .++..|||+..+.+..-.++.++.|++..+|++++|||+||+++++||+++|||||||+|||.+|+|.++.+... ..
T Consensus 243 ~-~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~-~~ 320 (628)
T COG0296 243 G-NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEG-EW 320 (628)
T ss_pred c-chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhh-cc
Confidence 5 789999998755555555788999999999999999999999999999999999999999999999998655431 11
Q ss_pred CcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceeccccCCcccchhcchhhHHHHHHHHhhcc--hh
Q 003226 496 NYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD--ED 573 (837)
Q Consensus 496 ~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~--~~ 573 (837)
..+.+|+.++..+++|++.+++.|+...|++++|+|+|+++|..+.+...+|+||+|+++|+++.+...++.+.. +.
T Consensus 321 -~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~ 399 (628)
T COG0296 321 -VPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRK 399 (628)
T ss_pred -cccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccc
Confidence 123456778999999999999999999999999999999999999999999999999999999988888887542 34
Q ss_pred hhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCc
Q 003226 574 WKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEA 653 (837)
Q Consensus 574 ~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p 653 (837)
+..+.+...+. .. ....+.|+.|||+...|++++..+ |.++.. ...+..|.+.++|+++||+|
T Consensus 400 ~~h~~~tf~~~-y~-~se~~~l~~sHDevvhGk~sl~~r---------m~g~~~------~~~a~lr~~~a~~~~~Pgk~ 462 (628)
T COG0296 400 YHHGELTFGLL-YA-FSENVVLPLSHDEVVHGKRSLGER---------MPGDAW------QKFANLRALAAYMWLHPGKP 462 (628)
T ss_pred cccCCCccccc-cc-cceeEeccccccceeecccchhcc---------CCcchh------hhHHHHHHHHHHHHhCCCce
Confidence 55554443332 11 234567999999999999887533 333222 34667788899999999997
Q ss_pred eEeccccccCC-CCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcc----cccchHHHHHHHHHHHHHHHhccC-
Q 003226 654 YLNFMGNEFGH-PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD----YLRYRGMQEFDRAMQHLEEKYGFM- 727 (837)
Q Consensus 654 ~L~y~G~E~G~-~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~----~~~~~~l~~f~~~Li~LRk~~~~L- 727 (837)
. +|||+|||+ .+|..+- .++|...+ ..+++.+.+|.+.|+++.+..+.+
T Consensus 463 L-LFMG~Efgq~~e~~~~~------------------------~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~ 517 (628)
T COG0296 463 L-LFMGEEFGQGREWNFFS------------------------SLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLH 517 (628)
T ss_pred e-eecchhhccCCCCcccC------------------------CCChhhhhhccccchHHHHHHHHHhhHHhhccCCccc
Confidence 5 599999999 4775433 34553332 234788999999999888776544
Q ss_pred -----CCCcEEEEeecCCCcEEEEEc-------CeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCC
Q 003226 728 -----TSEHQYVSRKDQGDRVIVFER-------GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDH 795 (837)
Q Consensus 728 -----~~g~~~i~~~~~~~~VlaF~R-------~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~ 795 (837)
..++.|+...+.+.+|++|.| +.+++|+|+++ ..+.+|+++++.+|.|++++|||...|||++..+.
T Consensus 518 ~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~-~~~~~y~~~~~~~g~~~~~lntd~~~~ggs~~~~~ 596 (628)
T COG0296 518 EQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTP-VPRVDYRVGVPVAGRWREVLNTDLAEYGGSGAGNL 596 (628)
T ss_pred hhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCC-CcccccccCCcccccEEEeccchHHHhcCCccccc
Confidence 467889988887778999999 24888888885 68899999999899999999999999999998776
Q ss_pred CcccccccCccCCCCeEEEEEECCceEEEEEE
Q 003226 796 NAEYFSSEGWYDDRPHSFLVYAPSRTAVVYAL 827 (837)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~ 827 (837)
...+.++...++++..+++++|||.+++||+.
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~~ 628 (628)
T COG0296 597 GLPVSGEDILWHGREWSLSLTLPPLAALVLKL 628 (628)
T ss_pred cceecceeeeccCcceeeEEecCCceeeEeeC
Confidence 65466666778889999999999999999863
No 12
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.4e-74 Score=683.61 Aligned_cols=510 Identities=17% Similarity=0.256 Sum_probs=371.7
Q ss_pred cCCcEEeCCcEEEEEeCCCcCEEEEEeecCCCCCC----ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003226 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN----ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 195 ~lG~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~~~----~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~ 270 (837)
+||+|+..+|++|+||||+|++|+|++ |++|+.. .++|.+.+.|+|+++||+.. +|..|+|+++..+.
T Consensus 11 ~lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~-------~g~~Y~y~v~~~~~ 82 (605)
T TIGR02104 11 ELGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDL-------HGYFYTYQVCINGK 82 (605)
T ss_pred CCccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCC-------CCCEEEEEEEcCCC
Confidence 899999999999999999999999998 8888543 57999988999999999754 57799999987655
Q ss_pred ccccCCccceeeccCCCCCCCCcEEeCCCccccccccCCC---CCCCCCceEEEEecCCCCCCCC-----CCCHHhhHhh
Q 003226 271 IKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ---PKKPKSLRIYEAHVGMSSTEPI-----INTYANFRDD 342 (837)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~IYE~hv~~f~~~~~-----~G~~~~~~~~ 342 (837)
.....|||++....... .++++|+...+.+.|.... ...+++++|||+|||+|+.+++ .|+|+++++.
T Consensus 83 ~~~~~DPya~~~~~~~~----~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~ 158 (605)
T TIGR02104 83 WRETVDPYAKAVTVNGK----RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTET 158 (605)
T ss_pred eEEEcCCCcceeccCCC----cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeecc
Confidence 55788999988654322 5889998655566776543 3346789999999999986532 6899999842
Q ss_pred ----------hhhHHHHcCCCEEEECCccccCCC--------CCCCCcccccccCCCCCCC--------HHHHHHHHHHH
Q 003226 343 ----------VLPRIKRLGYNAVQIMAVQEHSYY--------ASFGYHVTNFFAPSSRCGT--------PDDLKSLIDKA 396 (837)
Q Consensus 343 ----------~LdyLk~LGvt~I~L~Pi~e~~~~--------~s~GY~~~~y~avd~~~Gt--------~edfk~LV~~a 396 (837)
+|||||+||||+||||||++++.. .+|||++++||+|+++||+ ++|||+||++|
T Consensus 159 ~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~ 238 (605)
T TIGR02104 159 GTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQAL 238 (605)
T ss_pred CccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHH
Confidence 499999999999999999998742 3699999999999999997 59999999999
Q ss_pred HHcCCEEEEeeccCCCCCCccccccCCCCCCCccccc-CCCCCcc-cCC-CcCCCCCCHHHHHHHHHHHHHHHHHcCCCe
Q 003226 397 HELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHS-GSRGYHW-MWD-SRLFNYGSWEVLRFLLSNARWWLEEYKFDG 473 (837)
Q Consensus 397 H~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~-~~~g~~~-~w~-~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDG 473 (837)
|++||+||||+|+||++... ...|++..+.||.. ...+... .|+ ..++|+.+|+||++|+++++||++||||||
T Consensus 239 H~~Gi~VilDvV~NH~~~~~---~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDG 315 (605)
T TIGR02104 239 HENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDG 315 (605)
T ss_pred HHCCCEEEEEEEcCCccCCC---CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999998542 23566666655542 3322211 111 257999999999999999999999999999
Q ss_pred EEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceecccc-----CC
Q 003226 474 FRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQD-----GG 548 (837)
Q Consensus 474 fR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~-----gg 548 (837)
||||++.++ ..+||+++++.+++..|++++|||.|...+........ .+
T Consensus 316 fR~D~~~~~--------------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~ 369 (605)
T TIGR02104 316 FRFDLMGIH--------------------------DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQ 369 (605)
T ss_pred EEEechhcC--------------------------CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCC
Confidence 999999765 13589999999999999999999999765443221100 11
Q ss_pred cccchhcchhhHHHHHHHHhh-cchhh------hhhhhHHhhcc----------CcccccceecccCcccccccccchhh
Q 003226 549 VGFDYRLQMAIADKWIELLKK-RDEDW------KMGAIVHTMTN----------RRWLEKCVAYAESHDQALVGDKTIAF 611 (837)
Q Consensus 549 lgFd~~~~~~~~d~~~~~l~~-~~~~~------~~~~l~~~l~~----------~~~~~~~v~y~esHD~~r~g~~t~~~ 611 (837)
+.....|+..+.+.++..... ....+ ....+...+.. ...+.++|+|++|||+.|+.++...
T Consensus 370 ~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~- 448 (605)
T TIGR02104 370 MPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLSL- 448 (605)
T ss_pred CCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHHh-
Confidence 110111333333333211100 00011 11122222211 1234578999999999988654110
Q ss_pred hccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCc
Q 003226 612 WLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYD 691 (837)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~ 691 (837)
..+ ....+...++.|++.+++|++||+|+| |||||+|+... +++++|.
T Consensus 449 --~~~------------~~~~~~~~~r~rla~alllts~GiP~i-y~GdE~g~s~~-----------------g~~n~y~ 496 (605)
T TIGR02104 449 --ANP------------DETEEQLKKRQKLATAILLLSQGIPFL-HAGQEFMRTKQ-----------------GDENSYN 496 (605)
T ss_pred --hCC------------CCCHHHHHHHHHHHHHHHHHcCCCcee-ecchhhhccCC-----------------CCCCCcc
Confidence 000 011234567789999999999999987 99999999652 3334443
Q ss_pred --ccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCcEE-----E-EeecCCCcEEEEEcC---------eEEEE
Q 003226 692 --KCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQY-----V-SRKDQGDRVIVFERG---------NLVFV 754 (837)
Q Consensus 692 --~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~-----i-~~~~~~~~VlaF~R~---------~llvv 754 (837)
.+++.|+|...+ .++.+++|+|+||+||+++|+|+.+... + .+...+++|++|.|. .++||
T Consensus 497 ~~d~~~~ldW~~~~--~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv 574 (605)
T TIGR02104 497 SPDSINQLDWDRKA--TFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVI 574 (605)
T ss_pred CCCcccccCccccc--cchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEE
Confidence 357789998643 4568999999999999999999876321 1 112235679999992 48999
Q ss_pred EECCCCCcccceEEeccCCceEEEEEeCCC
Q 003226 755 FNFHWNSSYSDYRVGCLKPGKYKIVLDSDY 784 (837)
Q Consensus 755 ~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~ 784 (837)
+|++. ..+++.+|..|.|+++++++.
T Consensus 575 ~N~s~----~~~~v~lp~~~~w~~~~~~~~ 600 (605)
T TIGR02104 575 HNANP----EPVDIQLPSDGTWNVVVDNKN 600 (605)
T ss_pred EeCCC----CCeEEECCCCCCEEEEECCCc
Confidence 99984 236677777789999999764
No 13
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.1e-71 Score=648.51 Aligned_cols=479 Identities=26% Similarity=0.371 Sum_probs=354.8
Q ss_pred EEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCccceeecc
Q 003226 205 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQ 284 (837)
Q Consensus 205 v~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~~~~~~~~~~~~~~~ 284 (837)
|+||||||+|++|.|+++ ...++|++.++|+|++++|+.. +|..|+|+|++ .....|||++....
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~k~~~GvW~~~v~~~~-------~G~~Y~y~v~g---~~~v~DPya~~~~~ 65 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQRLGDGWFEITVPPVG-------PGDRYGYVLDD---GTPVPDPASRRQPD 65 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCeECCCCEEEEEECCCC-------CCCEEEEEEee---eEEecCcccccccc
Confidence 589999999999999973 2367999999999999999754 46799999975 34578899987533
Q ss_pred CCCCCCCCcEEeCCCccccccccCCCC--CCCCCceEEEEecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCccc
Q 003226 285 APGEIPYNGIYYDPPEEEKYVFQHPQP--KKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQE 362 (837)
Q Consensus 285 ~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~IYE~hv~~f~~~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e 362 (837)
... ..++++||. .|.|+++.+ ...++++|||+|||+|+. .|+|++++ ++|||||+||||+||||||++
T Consensus 66 ~~~---~~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~-~~l~yl~~LGv~~i~L~Pi~~ 135 (542)
T TIGR02402 66 GVH---GPSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAI-EKLPYLADLGITAIELMPVAQ 135 (542)
T ss_pred CCC---CCeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHH-HhhHHHHHcCCCEEEeCcccc
Confidence 222 258999985 488887654 235799999999999986 49999999 699999999999999999999
Q ss_pred cCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccC
Q 003226 363 HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 442 (837)
Q Consensus 363 ~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w 442 (837)
++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.++ ..+..| .+ ||... ....|
T Consensus 136 ~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~-~~~~~~---~~-y~~~~---~~~~w 207 (542)
T TIGR02402 136 FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG-NYLPRY---AP-YFTDR---YSTPW 207 (542)
T ss_pred CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc-cccccc---Cc-cccCC---CCCCC
Confidence 998778999999999999999999999999999999999999999999998764 222233 23 66432 23456
Q ss_pred CCcCCCCCCH---HHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHh
Q 003226 443 DSRLFNYGSW---EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 519 (837)
Q Consensus 443 ~~~~ln~~~~---eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~ 519 (837)
+ +.+|+.++ +||++|+++++||++||||||||||++.+|. +.+++.||+++++.
T Consensus 208 g-~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~----------------------~~~~~~~l~~~~~~ 264 (542)
T TIGR02402 208 G-AAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIA----------------------DTSAKHILEELARE 264 (542)
T ss_pred C-CccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhc----------------------cccHHHHHHHHHHH
Confidence 5 47999999 9999999999999999999999999998873 22356799999999
Q ss_pred hhccCCC---eEEEEeccCCCCCceeccccCCcccchhcchhhHHHHHHHHhhcchhh------hhhhhHHhhcc-----
Q 003226 520 IHGLYPE---AVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW------KMGAIVHTMTN----- 585 (837)
Q Consensus 520 v~~~~p~---~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~~~------~~~~l~~~l~~----- 585 (837)
+++..|+ +++|||.+...+..+.+...+|++||..|+..+.+.+...+.+....+ ....+...+..
T Consensus 265 ~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~ 344 (542)
T TIGR02402 265 VHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYD 344 (542)
T ss_pred HHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccC
Confidence 9999999 999999998888777777778899999988888777766665422111 11122222110
Q ss_pred --------C----c----ccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhC
Q 003226 586 --------R----R----WLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGL 649 (837)
Q Consensus 586 --------~----~----~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltl 649 (837)
+ . -+.++|+|++|||+. |+.++.. .+... .+.+++|++.+++||+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~--gn~~~~~---------Rl~~~--------~~~~~~~la~alllt~ 405 (542)
T TIGR02402 345 GEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQI--GNRALGE---------RLSQL--------LSPGSLKLAAALLLLS 405 (542)
T ss_pred ccccccccccCCCCCCCCCHHHEEEEccCcccc--cccchhh---------hhhhc--------CCHHHHHHHHHHHHHc
Confidence 0 0 124679999999972 2222100 00000 0126779999999999
Q ss_pred CCCceEeccccccCCCCCC-CCCCCCC----------C------CC-CCCcCCCCCCCCcccCcccCCCCcccccchHHH
Q 003226 650 GGEAYLNFMGNEFGHPEWI-DFPRGDQ----------R------LP-NGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQ 711 (837)
Q Consensus 650 pG~p~L~y~G~E~G~~~~~-d~p~~~~----------~------~~-~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~ 711 (837)
||+|+| |||||||+.+-. -|-+... + .+ .....+.....-..++.+++|...+...+.+++
T Consensus 406 pGiP~I-y~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~ 484 (542)
T TIGR02402 406 PYTPLL-FMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWL 484 (542)
T ss_pred CCCcee-eccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHH
Confidence 999988 999999996521 1111000 0 00 000000111111235678999877655678999
Q ss_pred HHHHHHHHHHHHhccCCCCc-EEEEe-ecCCCcEEEEEc--CeEEEEEECCC
Q 003226 712 EFDRAMQHLEEKYGFMTSEH-QYVSR-KDQGDRVIVFER--GNLVFVFNFHW 759 (837)
Q Consensus 712 ~f~~~Li~LRk~~~~L~~g~-~~i~~-~~~~~~VlaF~R--~~llvv~Nf~~ 759 (837)
+|||+||+|||++++|+.+. ..+.. ...++.|+++.. +.++|++|+++
T Consensus 485 ~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~ 536 (542)
T TIGR02402 485 AFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLST 536 (542)
T ss_pred HHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCC
Confidence 99999999999999986552 22222 134567888876 57999999994
No 14
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=8.4e-70 Score=644.72 Aligned_cols=554 Identities=19% Similarity=0.258 Sum_probs=383.9
Q ss_pred ccCCcEEeCCcEEEEEeCCCcCEEEEEeecCCCCC---CccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC--
Q 003226 194 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP---NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-- 268 (837)
Q Consensus 194 ~~lG~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~~---~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~-- 268 (837)
.+||+++.++|++|+||||+|++|.|+. |+++.. ..++|.+...|+|+++||+.. +|..|+|+++++
T Consensus 5 ~~LGa~~~~~g~~F~vwap~A~~V~L~l-~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~-------~g~~Y~yrv~g~~~ 76 (688)
T TIGR02100 5 FPLGATWDGQGVNFALFSANAEKVELCL-FDAQGEKEEARLPLPERTDDIWHGYLPGAQ-------PGQLYGYRVHGPYD 76 (688)
T ss_pred cCCCeEEeCCcEEEEEECCCCCEEEEEE-EcCCCCceeeEEecccCCCCEEEEEECCCC-------CCCEEEEEEeeeeC
Confidence 4799999999999999999999999987 555442 246899888999999999754 467999999863
Q ss_pred --CC-----ccccCCccceeeccCCC-------------------------CCCCCcEEeCCCccccccccCC--CCC-C
Q 003226 269 --SG-----IKDSIPAWIKFSVQAPG-------------------------EIPYNGIYYDPPEEEKYVFQHP--QPK-K 313 (837)
Q Consensus 269 --~~-----~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~d~~~~~~~~~~~~--~~~-~ 313 (837)
.| ....+||||+.+..... .....++|+|+ .|.|++. +|. .
T Consensus 77 ~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~ 152 (688)
T TIGR02100 77 PENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTP 152 (688)
T ss_pred CCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCC
Confidence 12 13568999998764421 00126778876 3788754 333 3
Q ss_pred CCCceEEEEecCCCCCC------CCCCCHHhhHhh-hhhHHHHcCCCEEEECCccccCCC---------CCCCCcccccc
Q 003226 314 PKSLRIYEAHVGMSSTE------PIINTYANFRDD-VLPRIKRLGYNAVQIMAVQEHSYY---------ASFGYHVTNFF 377 (837)
Q Consensus 314 ~~~~~IYE~hv~~f~~~------~~~G~~~~~~~~-~LdyLk~LGvt~I~L~Pi~e~~~~---------~s~GY~~~~y~ 377 (837)
.+++||||+||++|+.. ...|||+||++. +|||||+|||||||||||++++.. .+|||++.|||
T Consensus 153 ~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~ 232 (688)
T TIGR02100 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFF 232 (688)
T ss_pred ccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccc
Confidence 47899999999999853 246999999952 599999999999999999998642 36999999999
Q ss_pred cCCCCC---CCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccc-cCCCCCCC-cccccCCC--CCcccC--CCcCCC
Q 003226 378 APSSRC---GTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSR--GYHWMW--DSRLFN 448 (837)
Q Consensus 378 avd~~~---Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~-~~fdg~~~-~yf~~~~~--g~~~~w--~~~~ln 448 (837)
+|+++| |+++|||+||++||++||+||||+|+||++..+..+. ..+.+.++ .||..... +....| ..++||
T Consensus 233 a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln 312 (688)
T TIGR02100 233 APEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLN 312 (688)
T ss_pred ccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCcccccc
Confidence 999999 6799999999999999999999999999997653222 23444332 34443322 211111 236899
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeE
Q 003226 449 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 528 (837)
Q Consensus 449 ~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~ 528 (837)
+++|+||++|+++++||++||||||||||++..|.....+. + ....+++.++.. ...|+++
T Consensus 313 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~----------------~-~~~~~~~~i~~d--~~~~~~~ 373 (688)
T TIGR02100 313 LSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGF----------------D-MLSGFFTAIRQD--PVLAQVK 373 (688)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCC----------------c-ccHHHHHHHHhC--cccCCeE
Confidence 99999999999999999999999999999999874321111 0 123466777652 4678999
Q ss_pred EEEeccCCCCCceeccccCCcccc---hhcchhhHHHHHHHHhhcchhhhhhhhHHhhcc--------Ccccccceeccc
Q 003226 529 SIGEDVSGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWLEKCVAYAE 597 (837)
Q Consensus 529 ~iaE~~~~~p~~~~~~~~gglgFd---~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~--------~~~~~~~v~y~e 597 (837)
+|||.|...+.. +..+ .|+ ..||..+.+.++.++++... ....+...+.. .+.+.++|||++
T Consensus 374 ligE~W~~~~~~---~~~~--~~~~~~~~~Nd~frd~ir~f~~g~~~--~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~ 446 (688)
T TIGR02100 374 LIAEPWDIGPGG---YQVG--NFPPGWAEWNDRYRDDMRRFWRGDAG--MIGELANRLTGSSDLFEHNGRRPWASINFVT 446 (688)
T ss_pred EEEeeecCCCCc---cccc--CCCCceEEecHHHHHHHHHHHcCCCC--cHHHHHHHHhCCHhhccccCCCcCEEEEEEe
Confidence 999999643221 1111 233 34677777777777775321 22333333322 123567899999
Q ss_pred Ccccccccccchhhhc---cChh---------HHhhhh--cCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccC
Q 003226 598 SHDQALVGDKTIAFWL---MDKD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 663 (837)
Q Consensus 598 sHD~~r~g~~t~~~~~---~~~~---------~~~~~~--~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G 663 (837)
|||+.++.++...... .+++ .-+... +......+.+...+++|++.+++|++||+|+| |||||||
T Consensus 447 ~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i-~~GdE~g 525 (688)
T TIGR02100 447 AHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPML-LAGDEFG 525 (688)
T ss_pred CCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcee-eecHhhc
Confidence 9999887664211000 0000 000011 11111112334567788999999999999988 9999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCcc--cCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCcE---------
Q 003226 664 HPEWIDFPRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQ--------- 732 (837)
Q Consensus 664 ~~~~~d~p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~--------- 732 (837)
+.. .|++++|+. ..+.++|...+ .++.|++|+|+||+|||++|+|+.+..
T Consensus 526 ~t~-----------------~G~~n~y~~~~~~~~~dW~~~~--~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~ 586 (688)
T TIGR02100 526 RTQ-----------------QGNNNAYCQDNEIGWVDWSLDE--GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADG 586 (688)
T ss_pred cCC-----------------CCCCCCccCCCcccccCccccc--ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCC
Confidence 976 277777764 35689998643 577999999999999999998875411
Q ss_pred --EEEeec-------------CCCcEEEEEc------------CeEEEEEECCCCCcccceEEeccCC-ceEEEEEeCCC
Q 003226 733 --YVSRKD-------------QGDRVIVFER------------GNLVFVFNFHWNSSYSDYRVGCLKP-GKYKIVLDSDY 784 (837)
Q Consensus 733 --~i~~~~-------------~~~~VlaF~R------------~~llvv~Nf~~~~~~~~~~i~v~~~-g~~~~vl~sd~ 784 (837)
.+.+.. ....+|+|.. +.++|++|.+. ....+.+|.. .+|+.+++|..
T Consensus 587 ~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~----~~~~~~lP~~~~~w~~~~dt~~ 662 (688)
T TIGR02100 587 LKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGP----EPVPFKLPGGGGRWELVLDTAD 662 (688)
T ss_pred CCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCC----CCeEEECCCCCCcEEEEecCCC
Confidence 122211 2347888876 14899999984 2345555643 48999999853
Q ss_pred CccCCccccCCCcccccccCccCCCCeEEEEEECCceEEEEE
Q 003226 785 PLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 785 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~ 826 (837)
.. ... . .. ...-.+.||++|++||.
T Consensus 663 ~~--~~~-~----~~----------~~~~~~~v~~~s~~vl~ 687 (688)
T TIGR02100 663 EE--APG-I----HL----------DAGQEAELPARSVLLLR 687 (688)
T ss_pred CC--Ccc-c----cc----------cCCCEEEEcCCEEEEEe
Confidence 21 110 0 00 00135889999999986
No 15
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.1e-69 Score=659.57 Aligned_cols=585 Identities=19% Similarity=0.272 Sum_probs=392.6
Q ss_pred HHHHHHHHhhcCchhhhhcccccCCcEEeCCc-EEEEEeCCCcCEEEEEe-ecCCCCC--CccccccCCCceEEEEeCCC
Q 003226 173 KQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIG-DFNNWNP--NADIMTQNEFGVWEIFLPNN 248 (837)
Q Consensus 173 ~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~g-v~fr~WAP~A~~V~L~g-Dfn~w~~--~~~~m~r~~~GvWei~ip~~ 248 (837)
.+.+++++.|+| +||+++.++| ++|+||||+|++|.|++ |+++|+. ..++|.+.+.|+|+++||+.
T Consensus 306 ~~~~d~~y~y~g----------~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~ 375 (1111)
T TIGR02102 306 WRLKDEMYAYDG----------KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKE 375 (1111)
T ss_pred hhhhhhhhccCC----------CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCc
Confidence 346666666665 7999998777 79999999999999997 5555654 35799999999999999964
Q ss_pred CCCCCCCCCCCEEEEEEeCCCCccccCCccceeeccCCC------CCCCCcEEeCCCcc--ccccccCCC-CCCCCCceE
Q 003226 249 ADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPG------EIPYNGIYYDPPEE--EKYVFQHPQ-PKKPKSLRI 319 (837)
Q Consensus 249 ~~g~~~~~~g~~yk~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~--~~~~~~~~~-~~~~~~~~I 319 (837)
..|.. ..+|..|+|+|...+.....+|||++.+...++ ....+++++|++.. +.|.|.+.. ...+++++|
T Consensus 376 ~~G~~-d~~G~~Y~Y~V~~~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vI 454 (1111)
T TIGR02102 376 NTGID-SLTGYYYHYEITRGGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAII 454 (1111)
T ss_pred ccCcc-cCCCceEEEEEECCCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEE
Confidence 33321 236889999998765566788999997653221 01236788888543 246676532 345689999
Q ss_pred EEEecCCCCCCC--------CCCCHHhhHhhhhhHHHHcCCCEEEECCccccCC------------------CCCCCCcc
Q 003226 320 YEAHVGMSSTEP--------IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY------------------YASFGYHV 373 (837)
Q Consensus 320 YE~hv~~f~~~~--------~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~------------------~~s~GY~~ 373 (837)
||+|||+|+.++ ..|+|++|+ ++|||||+|||||||||||++++. ..+|||+|
T Consensus 455 YElHVrdFt~d~~~~~~~~~~~Gtf~gl~-ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp 533 (1111)
T TIGR02102 455 YEAHVRDFTSDPAIAGDLTAQFGTFAAFV-EKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDP 533 (1111)
T ss_pred EEEechhhCcCCCCCcccccCCcCHHHHH-HhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCc
Confidence 999999998542 369999999 699999999999999999997421 12599999
Q ss_pred cccccCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccC-CCCC-cccCC
Q 003226 374 TNFFAPSSRCGT--------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSG-SRGY-HWMWD 443 (837)
Q Consensus 374 ~~y~avd~~~Gt--------~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~-~~g~-~~~w~ 443 (837)
.+||+|+++||+ ++|||+||++||++||+||||||+||++..+ .|++..+.||+.. ..+. ...|+
T Consensus 534 ~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~ 608 (1111)
T TIGR02102 534 QNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFG 608 (1111)
T ss_pred CcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccc-----cccccCCCceEeeCCCCCcccccC
Confidence 999999999998 5899999999999999999999999998764 4777666666532 2222 23456
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhcc
Q 003226 444 SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 523 (837)
Q Consensus 444 ~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~ 523 (837)
...+|.++++||++|+++++||++||||||||||+|.++ ...+++.++..++++
T Consensus 609 g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~--------------------------d~~~~~~~~~~l~~~ 662 (1111)
T TIGR02102 609 GGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDH--------------------------DAASIEIAYKEAKAI 662 (1111)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccC--------------------------CHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999998643 124678888889999
Q ss_pred CCCeEEEEeccCCCCCc----eeccccCCcccchhcchhhHHHHHHHHhhcch-----hh------hhhhhHHhhccC--
Q 003226 524 YPEAVSIGEDVSGMPTF----CIPVQDGGVGFDYRLQMAIADKWIELLKKRDE-----DW------KMGAIVHTMTNR-- 586 (837)
Q Consensus 524 ~p~~~~iaE~~~~~p~~----~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~-----~~------~~~~l~~~l~~~-- 586 (837)
.|++++|||.|...... +.+.....+.+... ...+.+.+++.+++... .+ ....+...+...
T Consensus 663 dP~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~-ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~ 741 (1111)
T TIGR02102 663 NPNIIMIGEGWRTYAGDEGDPVQAADQDWMKYTET-VGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPH 741 (1111)
T ss_pred CcCEEEEEecccccCCCCcccccccchhhHhcCCc-ccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCcc
Confidence 99999999999642110 11111111111100 11223344444442110 11 112233333321
Q ss_pred ----cccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEecccccc
Q 003226 587 ----RWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEF 662 (837)
Q Consensus 587 ----~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~ 662 (837)
.-+.++|+|++|||+.++.|+.......+. ..........++.|++.+++|+.+|+|+| ++||||
T Consensus 742 ~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~----------~~~e~~~~~~~r~rla~~llllSQGiPfi-~aGqEf 810 (1111)
T TIGR02102 742 NFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDP----------KVAENQEEIHRRIRLGNLMVLTSQGTAFI-HSGQEY 810 (1111)
T ss_pred ccccCCcccEEEEEecCCCCchHhhhhhccccCc----------ccccchHHHHHHHHHHHHHHHHhCcHhhh-hcchhh
Confidence 245679999999999998765211000000 00000012356778888999999999988 999999
Q ss_pred CCCCCCCCC-----CCCCCCC---------CCCcC---CCCCCCCcc--cCcccCCCCccc----ccchHHHHHHHHHHH
Q 003226 663 GHPEWIDFP-----RGDQRLP---------NGQFV---PGNNFSYDK--CRRRFDLGDADY----LRYRGMQEFDRAMQH 719 (837)
Q Consensus 663 G~~~~~d~p-----~~~~~~~---------~~~~~---~gn~~s~~~--~r~~~~w~~~~~----~~~~~l~~f~~~Li~ 719 (837)
++....+-+ -.+...| .+.+. .+..+||+. .-+.++|..... +-...+.+|+|.||+
T Consensus 811 ~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~ 890 (1111)
T TIGR02102 811 GRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIE 890 (1111)
T ss_pred hcccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHH
Confidence 996432200 0011111 11100 122667754 355889986532 223689999999999
Q ss_pred HHHHhccCCCCcE-----EEEeec--------CCCcEEEEEc-----CeEEEEEECCCCCcccceEEeccCC----ceEE
Q 003226 720 LEEKYGFMTSEHQ-----YVSRKD--------QGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKP----GKYK 777 (837)
Q Consensus 720 LRk~~~~L~~g~~-----~i~~~~--------~~~~VlaF~R-----~~llvv~Nf~~~~~~~~~~i~v~~~----g~~~ 777 (837)
|||++++++.+.. .+.+.. ..+.|++|.- +.++|++|.++ ...++.+|.. ..|+
T Consensus 891 lRk~~~~fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~----~~~~~~lp~~~~~~~~~~ 966 (1111)
T TIGR02102 891 LRRSTDAFRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD----KARTLTLGEDYAHLTVGE 966 (1111)
T ss_pred HHhcCccccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC----CCEEEECCCCcccccceE
Confidence 9999998864421 122211 1357899986 46999999884 2244555542 3788
Q ss_pred EEEeCCCCccCCccccCCCcccccccCccCCCCeEEEEEECCceEEEEEEe
Q 003226 778 IVLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 778 ~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~ 828 (837)
.+++.+.. |...+.....+ .. ..-.++|||+|++||...
T Consensus 967 v~~~~~~~---g~~~~~~~~~~-----~~----~~~~~~v~~~s~~V~~~~ 1005 (1111)
T TIGR02102 967 VVVDAEQA---GVTGIAEPKGV-----EL----TAEGLKLDPLTAAVVRVG 1005 (1111)
T ss_pred EEEccccc---Ccccccccccc-----cc----cCCeEEEcCcEEEEEEec
Confidence 88875432 21111100000 00 012588999999999886
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=9.2e-69 Score=631.32 Aligned_cols=548 Identities=20% Similarity=0.285 Sum_probs=372.9
Q ss_pred cccCCcEEeCCcEEEEEeCCCcCEEEEEeecCCCC-CCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC--
Q 003226 193 YEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS-- 269 (837)
Q Consensus 193 y~~lG~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~-~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~-- 269 (837)
..+||++++++|++|+||||+|++|.|++ |+++. ...++|.+.++|+|+++||+.. +|..|+|+|+++.
T Consensus 9 ~~pLGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~-------~G~~Y~yrv~g~~~p 80 (658)
T PRK03705 9 PTPLGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGAR-------PGLRYGYRVHGPWQP 80 (658)
T ss_pred CCCcceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCC-------CCCEEEEEEccccCc
Confidence 45899999999999999999999999998 66542 3457898888999999999754 4679999998642
Q ss_pred --C-----ccccCCccceeeccCCCC------------------CCCCcEEeCCCccccccccCCCC-C-CCCCceEEEE
Q 003226 270 --G-----IKDSIPAWIKFSVQAPGE------------------IPYNGIYYDPPEEEKYVFQHPQP-K-KPKSLRIYEA 322 (837)
Q Consensus 270 --~-----~~~~~~~~~~~~~~~~~~------------------~~~~~~~~d~~~~~~~~~~~~~~-~-~~~~~~IYE~ 322 (837)
| ....+||||+.+...... ...+++++|+ +|.|++..+ . ..+++||||+
T Consensus 81 ~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~ 156 (658)
T PRK03705 81 AQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEA 156 (658)
T ss_pred ccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEE
Confidence 2 234689999987643210 0124566653 588986543 2 3478999999
Q ss_pred ecCCCCC-C-----CCCCCHHhhHh-hhhhHHHHcCCCEEEECCccccCCC---------CCCCCcccccccCCCCCCCH
Q 003226 323 HVGMSST-E-----PIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSYY---------ASFGYHVTNFFAPSSRCGTP 386 (837)
Q Consensus 323 hv~~f~~-~-----~~~G~~~~~~~-~~LdyLk~LGvt~I~L~Pi~e~~~~---------~s~GY~~~~y~avd~~~Gt~ 386 (837)
|||+|+. + ...|+|+++++ .+|||||+||||+||||||++++.. .+|||++.|||+|+++|||.
T Consensus 157 hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~ 236 (658)
T PRK03705 157 HVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASG 236 (658)
T ss_pred ehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCC
Confidence 9999985 2 23599999995 3699999999999999999998642 57999999999999999994
Q ss_pred -----HHHHHHHHHHHHcCCEEEEeeccCCCCCCccccc-cCCCCCCC-cccccCCCCCcccC--CCcCCCCCCHHHHHH
Q 003226 387 -----DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSRGYHWMW--DSRLFNYGSWEVLRF 457 (837)
Q Consensus 387 -----edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~-~~fdg~~~-~yf~~~~~g~~~~w--~~~~ln~~~~eVr~~ 457 (837)
+|||+||++||++||+||||||+||++.....+. ..+.+.++ .||.....+....| ..++||+++|+|+++
T Consensus 237 ~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~ 316 (658)
T PRK03705 237 PETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDW 316 (658)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHH
Confidence 7999999999999999999999999987432221 12334332 34443333333333 236899999999999
Q ss_pred HHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCC
Q 003226 458 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGM 537 (837)
Q Consensus 458 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~ 537 (837)
|+++++||++||||||||||+|.+|... ..|. . ...+++.++. ....|++++|||.|...
T Consensus 317 iid~l~~W~~e~gVDGFRfD~a~~l~~~-----~~~~------------~-~~~~~~ai~~--d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 317 AIDCLRYWVETCHVDGFRFDLATVLGRT-----PEFR------------Q-DAPLFTAIQN--DPVLSQVKLIAEPWDIG 376 (658)
T ss_pred HHHHHHHHHHHhCCCEEEEEcHhhhCcC-----cccc------------h-hhHHHHHHhh--CccccceEEEEecccCC
Confidence 9999999999999999999999988421 0111 0 0123444432 23568999999999654
Q ss_pred CCceeccccCCcccc---hhcchhhHHHHHHHHhhcchhhhhhhhHHhhc--------cCcccccceecccCcccccccc
Q 003226 538 PTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--------NRRWLEKCVAYAESHDQALVGD 606 (837)
Q Consensus 538 p~~~~~~~~gglgFd---~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~--------~~~~~~~~v~y~esHD~~r~g~ 606 (837)
+... ..+. |+ ..||..+.+.++.++.+... ....+...+. ..+.+.++|||+++||+.++.|
T Consensus 377 ~~~~---~~g~--~~~~~~~~Nd~fRd~ir~f~~~~~~--~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D 449 (658)
T PRK03705 377 PGGY---QVGN--FPPPFAEWNDHFRDAARRFWLHGDL--PLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRD 449 (658)
T ss_pred CChh---hhcC--CCcceEEEchHHHHHHHHHHccCCC--cHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHH
Confidence 3211 1111 22 13455556666666543211 1122222221 1234678999999999988766
Q ss_pred cchhhhcc---Chh---------HHhhhhc--CCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCC
Q 003226 607 KTIAFWLM---DKD---------MYDFMAL--DRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPR 672 (837)
Q Consensus 607 ~t~~~~~~---~~~---------~~~~~~~--~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~ 672 (837)
+....... +++ .-+.... ......+.....++.|++.+++|+++|+|+| |||||||++.
T Consensus 450 ~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i-~~GdE~grtq------ 522 (658)
T PRK03705 450 CVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPML-LAGDEHGHSQ------ 522 (658)
T ss_pred HHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHH-HhhHHhccCC------
Confidence 42110000 000 0000111 1111123344567788899999999999988 9999999976
Q ss_pred CCCCCCCCCcCCCCCCCCcc--cCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCc---------EEEEeec---
Q 003226 673 GDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH---------QYVSRKD--- 738 (837)
Q Consensus 673 ~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~---------~~i~~~~--- 738 (837)
.|++++|+. ..+.++|... .+.+++|+|+||+|||++++|+... .|+....
T Consensus 523 -----------~G~nN~y~~~~~i~~~dW~~~----~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~ 587 (658)
T PRK03705 523 -----------HGNNNAYCQDNALTWLDWSQA----DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPL 587 (658)
T ss_pred -----------CCCCCCccCCCCccccccchh----hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcC
Confidence 377888865 3457888753 3699999999999999999886432 2221111
Q ss_pred ------CCCcEEEEEc-CeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcccccccCccCCCCe
Q 003226 739 ------QGDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPH 811 (837)
Q Consensus 739 ------~~~~VlaF~R-~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 811 (837)
.....++|.- +.++|++|.+. ....+.+|. ++|+.+++.+.. +. . +.
T Consensus 588 ~~~~w~~~~~~~~~~~~~~~~v~~N~~~----~~~~~~lp~-~~w~~~~~~~~~---~~-----~---------~~---- 641 (658)
T PRK03705 588 SADEWQQGPKQLQILLSDRWLIAINATL----EVTEIVLPE-GEWHAIPPFAGE---DN-----P---------VI---- 641 (658)
T ss_pred ChhHhCCcceEEEEEECCCEEEEECCCC----CCeEEECCC-cceEEEEccCCC---cc-----c---------cc----
Confidence 1134566665 67999999884 235566665 789999654331 10 0 01
Q ss_pred EEEEEECCceEEEEEE
Q 003226 812 SFLVYAPSRTAVVYAL 827 (837)
Q Consensus 812 ~~~l~Lp~~s~~Vl~~ 827 (837)
...+.+|++|++||..
T Consensus 642 ~~~~~~~~~~~~~~~~ 657 (658)
T PRK03705 642 TAVWHGPAHGVCVFQR 657 (658)
T ss_pred CceeeecCcEEEEEec
Confidence 1346799999999863
No 17
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=4.3e-66 Score=617.76 Aligned_cols=553 Identities=17% Similarity=0.225 Sum_probs=371.3
Q ss_pred HHHHHHhhcCchhhhhcccccCCcEEeCCcEEEEEeCCCcCEEEEEeecCCCC-CCccccccC-CCceEEEEeCCCCCCC
Q 003226 175 MCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQN-EFGVWEIFLPNNADGS 252 (837)
Q Consensus 175 ~~~~i~~~~g~l~~f~~~y~~lG~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~-~~~~~m~r~-~~GvWei~ip~~~~g~ 252 (837)
.+++++.|+|.- ..||+++++++++|+||||+|++|.|++..++++ ...++|.++ +.|+|++++|+.+.
T Consensus 114 ~lD~~y~y~~~~-------~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~-- 184 (898)
T TIGR02103 114 VLDALYAYAGPA-------LSLGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWK-- 184 (898)
T ss_pred hhhHHhhcCCCC-------CCCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCC--
Confidence 445555565510 2499999999999999999999999998666653 456899987 78999999997654
Q ss_pred CCCCCCCEEEEEEeCC---CCc---cccCCccceeeccCCCCCCCCcEEeCCCc--cccccccCC---CCC--CCCCceE
Q 003226 253 PPIPHGSRVKIHMDTP---SGI---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHP---QPK--KPKSLRI 319 (837)
Q Consensus 253 ~~~~~g~~yk~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~---~~~--~~~~~~I 319 (837)
|..|+|+|+.. .|. ....|||++.+. .++. .++++|+.. .++..|... ++. .+++++|
T Consensus 185 -----G~~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als-~n~~---~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iI 255 (898)
T TIGR02103 185 -----GAYYRYEVTVYHPSTGKVETYLVTDPYSVSLS-ANSE---YSQVVDLNDPALKPEGWDALAMPKPQLASFADMVL 255 (898)
T ss_pred -----CCEeEEEEEEecCCCCeECCeEEeCcCcceEc-CCCC---CeEEeCCccccCCCcchhhcccccCCcCCCcccEE
Confidence 56888888732 232 356899999875 3443 588898753 246677643 232 4689999
Q ss_pred EEEecCCCCCC------CCCCCHHhhHhh------hhhHHHHcCCCEEEECCccccCC----------------------
Q 003226 320 YEAHVGMSSTE------PIINTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY---------------------- 365 (837)
Q Consensus 320 YE~hv~~f~~~------~~~G~~~~~~~~------~LdyLk~LGvt~I~L~Pi~e~~~---------------------- 365 (837)
||+|||+||.. ...|+|.+|++. .|+||++||||||+||||+++..
T Consensus 256 YElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~ 335 (898)
T TIGR02103 256 YELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELN 335 (898)
T ss_pred EEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhccc
Confidence 99999999843 346999999952 36666678999999999998741
Q ss_pred ----------------------------------------CCCCCCcccccccCCCCCCC-------HHHHHHHHHHHHH
Q 003226 366 ----------------------------------------YASFGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHE 398 (837)
Q Consensus 366 ----------------------------------------~~s~GY~~~~y~avd~~~Gt-------~edfk~LV~~aH~ 398 (837)
..+|||+|.+||+|+++|++ +.|||+||++||+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~ 415 (898)
T TIGR02103 336 PDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNK 415 (898)
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHH
Confidence 12799999999999999998 3799999999999
Q ss_pred cCCEEEEeeccCCCCCCccccccCCCCCCCcccccCC-CCCc-ccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEe
Q 003226 399 LGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYH-WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRF 476 (837)
Q Consensus 399 ~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~-~g~~-~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~ 476 (837)
+||+||||||+||++..+......++...+.||+... .|.. ...+..+++.+|++||++|+++++||++|||||||||
T Consensus 416 ~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRf 495 (898)
T TIGR02103 416 TGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRF 495 (898)
T ss_pred CCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998765444557777677776432 2221 1122346789999999999999999999999999999
Q ss_pred cccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCce-ecccc--------C
Q 003226 477 DGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFC-IPVQD--------G 547 (837)
Q Consensus 477 D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~-~~~~~--------g 547 (837)
|+|.++. .+||+++++.+++++|+++++||.|....... ..... .
T Consensus 496 Dlm~~~~--------------------------~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~ 549 (898)
T TIGR02103 496 DLMGHHP--------------------------KAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGT 549 (898)
T ss_pred echhhCC--------------------------HHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCC
Confidence 9998872 35899999999999999999999996321111 01111 1
Q ss_pred Ccc-cchhcchhhHHHHHHHHhhcc-----------hhhhhh------------------------h----hHHhh----
Q 003226 548 GVG-FDYRLQMAIADKWIELLKKRD-----------EDWKMG------------------------A----IVHTM---- 583 (837)
Q Consensus 548 glg-Fd~~~~~~~~d~~~~~l~~~~-----------~~~~~~------------------------~----l~~~l---- 583 (837)
|+| |+-+ +++.+++.. .++..+ . +...+
T Consensus 550 ~ig~FnD~--------~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~ 621 (898)
T TIGR02103 550 GIGTFSDR--------LRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFV 621 (898)
T ss_pred CeEEeccc--------hhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCcccccc
Confidence 122 2222 222222100 000000 0 00001
Q ss_pred --------------c-------cCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHH
Q 003226 584 --------------T-------NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMI 642 (837)
Q Consensus 584 --------------~-------~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a 642 (837)
. ....+.++|+|+++||+.++.|+... .+ +.....+...+.++++
T Consensus 622 ~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~--~~------------~~~~~~~~r~r~~~la 687 (898)
T TIGR02103 622 LTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISY--KA------------AAETPSAERVRMQAVS 687 (898)
T ss_pred ccccccccccccccccCcCccccccCHHHheeeeeccCCccHHHHHHh--hC------------CCCCCHHHHHHHHHHH
Confidence 0 00235678999999999998876321 01 1111223456778899
Q ss_pred HHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCccc--CcccCCCCccc----------------
Q 003226 643 RLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKC--RRRFDLGDADY---------------- 704 (837)
Q Consensus 643 ~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~--r~~~~w~~~~~---------------- 704 (837)
.++.++.+|+|+| .+|+||...+- +..+||+.. -+.++|.....
T Consensus 688 ~a~~~lsQGipF~-haG~E~lRSK~-----------------~~~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w 749 (898)
T TIGR02103 688 LSTVMLGQGIPFF-HAGSELLRSKS-----------------FDRDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNW 749 (898)
T ss_pred HHHHHHhChhhHH-hcchHhhcCCC-----------------CCCCCCcCchhhheecccccccccccCCCcccccccch
Confidence 9999999999988 99999999763 223333321 22444443211
Q ss_pred ----------------ccchHHHHHHHHHHHHHHHhccCCCCc-----EEEEeecC----CCcEEEEEc-----------
Q 003226 705 ----------------LRYRGMQEFDRAMQHLEEKYGFMTSEH-----QYVSRKDQ----GDRVIVFER----------- 748 (837)
Q Consensus 705 ----------------~~~~~l~~f~~~Li~LRk~~~~L~~g~-----~~i~~~~~----~~~VlaF~R----------- 748 (837)
.....+.++++.||+||+++|+++-+. ..+.+.+. ..+||+|.-
T Consensus 750 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~ 829 (898)
T TIGR02103 750 PIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRNTGPDQIPGLIVMSIDDGGIQAGASL 829 (898)
T ss_pred hhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEeccCCcCCCCEEEEEEcCCcccccccc
Confidence 113578999999999999999987442 12333232 257999864
Q ss_pred ----CeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcccccccCccCCCCeEEEEEECCceEEE
Q 003226 749 ----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVV 824 (837)
Q Consensus 749 ----~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~V 824 (837)
+.++||+|-+++ ...+ +.......|+..-.-.. ++...+... .+.. ..-++++||+|++|
T Consensus 830 d~~~~~ivVv~Na~~~--~~~~-~~~~~~~~~~l~~~~~~---~~d~~v~~~--------~~~~--~~~~~~vp~~s~~V 893 (898)
T TIGR02103 830 DPRYDGIVVIFNARPE--EVTL-SPDFAGTGLELHAVQQA---SGDESVAKS--------VYSA--ANGTFTVPAWTTAV 893 (898)
T ss_pred ccccCeEEEEEcCCCc--cEEE-ecccCCCcEEEEecccc---cCccccccc--------eeec--cCCEEEEcCcEEEE
Confidence 248999998853 2222 32222224766422110 111111100 0000 01368999999999
Q ss_pred EEE
Q 003226 825 YAL 827 (837)
Q Consensus 825 l~~ 827 (837)
|..
T Consensus 894 ~~~ 896 (898)
T TIGR02103 894 FVL 896 (898)
T ss_pred EEe
Confidence 976
No 18
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=8e-64 Score=595.87 Aligned_cols=539 Identities=17% Similarity=0.208 Sum_probs=352.0
Q ss_pred cCCcEEeCCcEEEEEeCCCcCEEEEEeecCCCCC----CccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC--
Q 003226 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-- 268 (837)
Q Consensus 195 ~lG~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~~----~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~-- 268 (837)
+||+++++++++|+||||+|++|.|++ |++++. ..++|. .+.|||++++++.+. |..|+|+|...
T Consensus 214 ~LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~-------G~~Y~Y~V~v~~p 284 (970)
T PLN02877 214 PLGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWE-------GCYYVYEVSVYHP 284 (970)
T ss_pred CCcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCCC-------CCeeEEEEeeccc
Confidence 799999999999999999999999998 665532 235786 678999999998665 55888888632
Q ss_pred -CCc---cccCCccceeeccCCCCCCCCcEEeCCCc--cccccccC---CCC--CCCCCceEEEEecCCCCCCC------
Q 003226 269 -SGI---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQH---PQP--KKPKSLRIYEAHVGMSSTEP------ 331 (837)
Q Consensus 269 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~---~~~--~~~~~~~IYE~hv~~f~~~~------ 331 (837)
.|. ....|||++....+ +. .+++.|+.. ..+..|.. ++| ..+++++|||+|||+||..+
T Consensus 285 ~~g~~~~~~v~DPYA~als~n-g~---~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~ 360 (970)
T PLN02877 285 STGKVETCYANDPYARGLSAD-GR---RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPD 360 (970)
T ss_pred CCCcccccccCCccceEEecC-CC---ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcC
Confidence 122 34689999876543 33 477777753 24567764 233 34689999999999998642
Q ss_pred CCCCHHhhHhh------hhhHHHHcCCCEEEECCccccCC-------------------------------------CCC
Q 003226 332 IINTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY-------------------------------------YAS 368 (837)
Q Consensus 332 ~~G~~~~~~~~------~LdyLk~LGvt~I~L~Pi~e~~~-------------------------------------~~s 368 (837)
..|+|.+|++. .|+|||+|||||||||||++++. ..+
T Consensus 361 ~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yN 440 (970)
T PLN02877 361 FRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYN 440 (970)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCC
Confidence 35999999952 36666666999999999999743 157
Q ss_pred CCCcccccccCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeccCCCCCCcccc-ccCCCCCCCccccc-CCCCCc
Q 003226 369 FGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-LNMFDGTDGHYFHS-GSRGYH 439 (837)
Q Consensus 369 ~GY~~~~y~avd~~~Gt-------~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~-~~~fdg~~~~yf~~-~~~g~~ 439 (837)
|||+|.+||+|+++|+| +.|||+||++||++||+||||||+||++..++++ .+.+++..+.||+. ...|..
T Consensus 441 WGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~ 520 (970)
T PLN02877 441 WGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFI 520 (970)
T ss_pred CCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCc
Confidence 99999999999999998 4689999999999999999999999998765443 35677777766654 333321
Q ss_pred ccC-CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHH
Q 003226 440 WMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVND 518 (837)
Q Consensus 440 ~~w-~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~ 518 (837)
..+ +....+.++++||++|+++++||++||||||||||+|.++... .|..+++
T Consensus 521 ~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~--------------------------tm~~~~~ 574 (970)
T PLN02877 521 ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKR--------------------------TMVRAKD 574 (970)
T ss_pred ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHH--------------------------HHHHHHH
Confidence 111 1234567899999999999999999999999999999887321 3444455
Q ss_pred hhhcc-------C-CCeEEEEeccCCCC--Ccee---cccc----CCcc-cchhcchhhHHHHHHHHhhc--c-----hh
Q 003226 519 MIHGL-------Y-PEAVSIGEDVSGMP--TFCI---PVQD----GGVG-FDYRLQMAIADKWIELLKKR--D-----ED 573 (837)
Q Consensus 519 ~v~~~-------~-p~~~~iaE~~~~~p--~~~~---~~~~----gglg-Fd~~~~~~~~d~~~~~l~~~--~-----~~ 573 (837)
.++++ . |+++++||.|.... ...+ ..+. .|+| |+ |.+++.+++. . .+
T Consensus 575 ~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~Fn--------D~~RDavkGg~~F~~~~~qG 646 (970)
T PLN02877 575 ALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFN--------DRIRDAMLGGSPFGHPLQQG 646 (970)
T ss_pred HHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEec--------chhHHHHcCCCCCCCcCCCc
Confidence 55544 3 78999999995321 0000 0000 1222 22 2222333310 0 00
Q ss_pred hhh-----------------------------hhhHHhhc--------------------c-----C-cccccceecccC
Q 003226 574 WKM-----------------------------GAIVHTMT--------------------N-----R-RWLEKCVAYAES 598 (837)
Q Consensus 574 ~~~-----------------------------~~l~~~l~--------------------~-----~-~~~~~~v~y~es 598 (837)
+.. ..+...+. + . ..+.++|||+++
T Consensus 647 f~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~ 726 (970)
T PLN02877 647 FVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSA 726 (970)
T ss_pred eecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeec
Confidence 000 00000110 0 0 135688999999
Q ss_pred cccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCC
Q 003226 599 HDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLP 678 (837)
Q Consensus 599 HD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~ 678 (837)
||+.++.|+... .+ +.....+...+.++++.++.++.+|+|+| .+|+||...+-
T Consensus 727 HDN~TL~D~l~~--~~------------~~~~s~~~r~r~~~la~aiv~lsQGipF~-haG~E~lRSK~----------- 780 (970)
T PLN02877 727 HDNETLFDIISL--KT------------PMEISVDERCRINHLATSIIALSQGIPFF-HAGDEILRSKS----------- 780 (970)
T ss_pred cCCchHHHHHHh--hc------------CCCCCHHHHHHHHHHHHHHHHHhChhhHH-hcchhhhcCCC-----------
Confidence 999998876321 01 11112344577889999999999999998 99999999763
Q ss_pred CCCcCCCCCCCCccc--CcccCCCCccc---------ccc-----------------------hHHHHHHHHHHHHHHHh
Q 003226 679 NGQFVPGNNFSYDKC--RRRFDLGDADY---------LRY-----------------------RGMQEFDRAMQHLEEKY 724 (837)
Q Consensus 679 ~~~~~~gn~~s~~~~--r~~~~w~~~~~---------~~~-----------------------~~l~~f~~~Li~LRk~~ 724 (837)
+..+||+.. -+.++|....+ .++ ..+.+++|.||+||+++
T Consensus 781 ------~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~ 854 (970)
T PLN02877 781 ------LDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSS 854 (970)
T ss_pred ------CCCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 334455432 33566654110 111 35688999999999999
Q ss_pred ccCCCCc-----EEEEeecC----CCcEEEEEc-----------------CeEEEEEECCCCCcccceEEeccCCceEEE
Q 003226 725 GFMTSEH-----QYVSRKDQ----GDRVIVFER-----------------GNLVFVFNFHWNSSYSDYRVGCLKPGKYKI 778 (837)
Q Consensus 725 ~~L~~g~-----~~i~~~~~----~~~VlaF~R-----------------~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~ 778 (837)
|+++-+. +.+.+.+. ..+||+|.- +.++||+|-+++ ...+.+|..+.+..
T Consensus 855 plFrl~t~~~I~~~v~F~~~g~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~----~~~~~~~~~~~~~~ 930 (970)
T PLN02877 855 PLFRLRTANAIQERVRFHNTGPSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPT----EVSFESPALKGRTL 930 (970)
T ss_pred cccCCCCHHHHHhhcEEeccCCCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCCc----cEEEecccccccce
Confidence 9987442 12222222 347999965 238999998852 24444554322222
Q ss_pred EEeCCCCccCCccccCCCcccccccCccCCCCeEEEEEECCceEEEEEE
Q 003226 779 VLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYAL 827 (837)
Q Consensus 779 vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~ 827 (837)
-|..-. . .+...+... ..+... .-++++||+|+.||..
T Consensus 931 ~l~~v~-~-~~~d~~~~~-------~~~~~~--~~~~tvp~~t~aVfv~ 968 (970)
T PLN02877 931 ELHPVQ-V-MSADEVVKK-------SVYEAS--SGVFTVPPRTTAVFVE 968 (970)
T ss_pred eecccc-c-ccccceecc-------ceeecc--CCeEEecCceEEEEEe
Confidence 222100 0 011000000 011111 2368899999999975
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5e-61 Score=597.88 Aligned_cols=477 Identities=18% Similarity=0.271 Sum_probs=332.9
Q ss_pred ccCCcEEeCCcEEEEEeCCCcCEEEEEeecCCCCCC---ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003226 194 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 194 ~~lG~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~~~---~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~ 270 (837)
.+||+++..+||+|+||||+|++|.|+. |++|... .++|.+...|+|+++|++... |..|+|+++++.+
T Consensus 14 ~plGA~~~~~gv~F~v~ap~A~~V~L~l-f~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~-------g~~Ygyrv~g~~~ 85 (1221)
T PRK14510 14 EPLGAVPDGGGVNLALFSGAAERVEFCL-FDLWGVREEARIKLPGRTGDVWHGFIVGVGP-------GARYGNRQEGPGG 85 (1221)
T ss_pred CCCceEEECCeEEEEEECCCCCEEEEEE-EECCCCCeeEEEECCCCcCCEEEEEEccCCC-------CcEEEEEeccCCC
Confidence 5899999999999999999999999996 8887543 367777788999999997544 5689999987543
Q ss_pred c---------cccCCccceeeccCCCC--CCC------------CcEEeCCCc--cccccccCCCC-CC-CCCceEEEEe
Q 003226 271 I---------KDSIPAWIKFSVQAPGE--IPY------------NGIYYDPPE--EEKYVFQHPQP-KK-PKSLRIYEAH 323 (837)
Q Consensus 271 ~---------~~~~~~~~~~~~~~~~~--~~~------------~~~~~d~~~--~~~~~~~~~~~-~~-~~~~~IYE~h 323 (837)
. ...+|||++.......- ..| .+.+.+|.. ..+|.|....+ .. ..+.+|||+|
T Consensus 86 p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~h 165 (1221)
T PRK14510 86 PGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMN 165 (1221)
T ss_pred cccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEc
Confidence 1 24678998876542210 000 112222210 11477875443 22 3689999999
Q ss_pred cCCCCCC------CCCCCHHhhHh-hhhhHHHHcCCCEEEECCccccCC---------CCCCCCcccccccCCCCCC--C
Q 003226 324 VGMSSTE------PIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSY---------YASFGYHVTNFFAPSSRCG--T 385 (837)
Q Consensus 324 v~~f~~~------~~~G~~~~~~~-~~LdyLk~LGvt~I~L~Pi~e~~~---------~~s~GY~~~~y~avd~~~G--t 385 (837)
|+.|+.. +..|+|+++.+ ++|||||+||||+||||||++++. .++|||++.|||+|+++|| +
T Consensus 166 vr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~ 245 (1221)
T PRK14510 166 VRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGG 245 (1221)
T ss_pred cchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCc
Confidence 9999752 23588888872 478999999999999999999854 2469999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccc-cCCCCC-CCcccccCC---CCCcccCCC-cCCCCCCHHHHHHHH
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGT-DGHYFHSGS---RGYHWMWDS-RLFNYGSWEVLRFLL 459 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~-~~fdg~-~~~yf~~~~---~g~~~~w~~-~~ln~~~~eVr~~l~ 459 (837)
.+|||+||++||++||+||||||+|||+.++..+. -.+.+. +..||+... ..+...|+. ..+|+++|+|+++|+
T Consensus 246 ~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~ 325 (1221)
T PRK14510 246 EEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPM 325 (1221)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHH
Confidence 99999999999999999999999999998753321 122232 234554321 223344543 468999999999999
Q ss_pred HHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEE-----EEecc
Q 003226 460 SNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS-----IGEDV 534 (837)
Q Consensus 460 ~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~-----iaE~~ 534 (837)
++++||++ |||||||||++.+|... ...||+.++..++++.|+.++ |||.|
T Consensus 326 d~lr~Wv~-~gVDGfRfDla~~l~r~-----------------------~~~f~~~~~~~l~ai~~d~~l~~~~ligE~W 381 (1221)
T PRK14510 326 DVLRSWAK-RGVDGFRLDLADELARE-----------------------PDGFIDEFRQFLKAMDQDPVLRRLKMIAEVW 381 (1221)
T ss_pred HHHHHHHH-hCCCEEEEechhhhccC-----------------------ccchHHHHHHHHHHhCCCcCcccCcEEEecc
Confidence 99999999 99999999999887311 124889999999999998877 99999
Q ss_pred CCCCCceeccccCCcccc---hhcchhhHHHHHHHHhhcchhhhhhhhHHhhcc--------CcccccceecccCccccc
Q 003226 535 SGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWLEKCVAYAESHDQAL 603 (837)
Q Consensus 535 ~~~p~~~~~~~~gglgFd---~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~--------~~~~~~~v~y~esHD~~r 603 (837)
...+.. +..+. |+ ..+|..+.+.++.++++... ....+...+.. .+.+..+|||++|||+.|
T Consensus 382 d~~~~~---~~~g~--f~~~~~~~N~~frd~vr~f~~g~~~--~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~r 454 (1221)
T PRK14510 382 DDGLGG---YQYGK--FPQYWGEWNDPLRDIMRRFWLGDIG--MAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFT 454 (1221)
T ss_pred cCCCCc---cccCC--CCcceeeeccHHHHHHHHHhcCCCc--hHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchH
Confidence 653221 11121 22 22455556666666654321 11222222211 123456899999999999
Q ss_pred ccccchhhhccC---hh---------HHhhhh--cCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCC
Q 003226 604 VGDKTIAFWLMD---KD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWID 669 (837)
Q Consensus 604 ~g~~t~~~~~~~---~~---------~~~~~~--~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d 669 (837)
+.+..-.....| ++ ..+... +.+....+.....++.|++.+++|+++|+|+| |||||+|+..
T Consensus 455 l~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~I-y~GdE~g~tq--- 530 (1221)
T PRK14510 455 LLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPML-YYGDEAGRSQ--- 530 (1221)
T ss_pred HHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEE-ecchhccccc---
Confidence 865311000000 00 000000 11111122233566778899999999999987 9999999975
Q ss_pred CCCCCCCCCCCCcCCCCCCCC--cccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCc
Q 003226 670 FPRGDQRLPNGQFVPGNNFSY--DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH 731 (837)
Q Consensus 670 ~p~~~~~~~~~~~~~gn~~s~--~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~ 731 (837)
.||+++| +.+|+.|+|... .++|++|+|+||+|||++++|+.+.
T Consensus 531 --------------~Gn~n~y~~~~~r~~~~W~~~----~~~l~~f~k~Li~lRk~~~~L~~g~ 576 (1221)
T PRK14510 531 --------------NGNNNGYAQDNNRGTYPWGNE----DEELLSFFRRLIKLRREYGVLRQGE 576 (1221)
T ss_pred --------------CCCCCCCCCCCccccCCcccc----cHHHHHHHHHHHHHHHhChhhccCc
Confidence 2666666 356889999764 3589999999999999999998764
No 20
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=2.6e-57 Score=534.79 Aligned_cols=462 Identities=18% Similarity=0.223 Sum_probs=306.9
Q ss_pred eCCcEEEEEeCCC---cCEEEEEeecCCCCCCccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccc
Q 003226 201 SDTGITYREWAPG---AKSASLIGDFNNWNPNADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKD 273 (837)
Q Consensus 201 ~~~gv~fr~WAP~---A~~V~L~gDfn~w~~~~~~m~r~----~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~~~~ 273 (837)
..+.+++|+..+. .++|.|.....+. ....+|++. ..-+|+++||.... ..-..|.|.+...++..
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~-~~~~~m~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~F~l~~~~~~~- 89 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNE-EYLLPMEKQRSQPQVTAWRASLPLNSG-----QPRRRYSFKLLWHDRQR- 89 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCC-EEEEEeEEeecCCCceEEEEEEEcCCC-----CceEEEEEEEEeCCEEE-
Confidence 4556888888663 4578887643332 234678763 23469999985311 11247888876533211
Q ss_pred cCCccceeeccCCCCCCCCcEEeCCCcccccccc--CCCCCCCCCceEEEEecCCCCCCCC-------------------
Q 003226 274 SIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQ--HPQPKKPKSLRIYEAHVGMSSTEPI------------------- 332 (837)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~IYE~hv~~f~~~~~------------------- 332 (837)
| ....+.. . ..++....|.+. .+.|.+-++.||||+++..|.+.+.
T Consensus 90 ----~----~~~~g~~----~-~~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~ 156 (598)
T PRK10785 90 ----W----FTPQGFS----R-RPPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEII 156 (598)
T ss_pred ----E----EcCCcee----e-ccCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCccc
Confidence 1 0000100 0 001000112221 1223444889999999988742100
Q ss_pred ------------------CCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHH
Q 003226 333 ------------------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLID 394 (837)
Q Consensus 333 ------------------~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~ 394 (837)
-|+|+||+ ++|||||+||||+|||+||++++. +|||+++||++|||+|||.++|++||+
T Consensus 157 ~~~w~~~~~~~~~~~~f~GGDl~GI~-~kLdYL~~LGv~~I~L~Pif~s~s--~hgYd~~Dy~~iDp~~Gt~~df~~Lv~ 233 (598)
T PRK10785 157 LRDWDEPVTAQAGGSTFYGGDLDGIS-EKLPYLKKLGVTALYLNPIFTAPS--VHKYDTEDYRHVDPQLGGDAALLRLRH 233 (598)
T ss_pred ccCcCCCcccccccccccCcCHHHHH-HHHHHHHHcCCCEEEeCCcccCCC--CCCcCcccccccCcccCCHHHHHHHHH
Confidence 28999999 699999999999999999999876 799999999999999999999999999
Q ss_pred HHHHcCCEEEEeeccCCCCCCccccccC-------CCCCC---CcccccCCCCCcccC----CCcCCCCCCHHHHHHHHH
Q 003226 395 KAHELGLLVLMDIVHSHASNNVLDGLNM-------FDGTD---GHYFHSGSRGYHWMW----DSRLFNYGSWEVLRFLLS 460 (837)
Q Consensus 395 ~aH~~GI~VIlDvV~NH~s~~~~~~~~~-------fdg~~---~~yf~~~~~g~~~~w----~~~~ln~~~~eVr~~l~~ 460 (837)
+||++||+||||+|+||++.+|.+.... +.... ..||.....+....| +.|+||++||+|+++|++
T Consensus 234 ~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~ 313 (598)
T PRK10785 234 ATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYR 313 (598)
T ss_pred HHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHh
Confidence 9999999999999999999987532211 11111 124443333322233 348999999999999995
Q ss_pred ----HHHHHHHH-cCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccC
Q 003226 461 ----NARWWLEE-YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (837)
Q Consensus 461 ----~l~~Wl~e-~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~ 535 (837)
++++|+++ |||||||+|+|.++... + ......+||+++++.+++.+|++++|||.|.
T Consensus 314 ~~~~v~~~Wl~~~~giDG~RlDva~~v~~~--~----------------~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~ 375 (598)
T PRK10785 314 GEDSIVRHWLKAPYNIDGWRLDVVHMLGEG--G----------------GARNNLQHVAGITQAAKEENPEAYVLGEHFG 375 (598)
T ss_pred hhhHHHHHhhcCCCCCcEEEEecHhHhccc--c----------------CccccHHHHHHHHHHHHhhCCCeEEEEeccC
Confidence 79999997 99999999999766311 0 0112457999999999999999999999986
Q ss_pred CCCCceeccccCCcccchhcch-hhHHHHHHHHhhcchhh-----hhhhhHHhh----ccCccc--ccceecccCccccc
Q 003226 536 GMPTFCIPVQDGGVGFDYRLQM-AIADKWIELLKKRDEDW-----KMGAIVHTM----TNRRWL--EKCVAYAESHDQAL 603 (837)
Q Consensus 536 ~~p~~~~~~~~gglgFd~~~~~-~~~d~~~~~l~~~~~~~-----~~~~l~~~l----~~~~~~--~~~v~y~esHD~~r 603 (837)
.... +..+. ++|..++. .+...+..++......+ ....+...+ ....+. ...++|++|||+.|
T Consensus 376 ~~~~----~l~~~-~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R 450 (598)
T PRK10785 376 DARQ----WLQAD-VEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTAR 450 (598)
T ss_pred Chhh----hccCc-cccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccch
Confidence 4321 11111 12222221 22222233333211000 111111111 111111 12468999999999
Q ss_pred ccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCCCCCcC
Q 003226 604 VGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFV 683 (837)
Q Consensus 604 ~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~~ 683 (837)
+.+. ++. ..+++|+|.+++||+||+|+| |||+|+|+.+..| |
T Consensus 451 ~~~~------~~~------------------~~~~~kla~~ll~t~pGiP~I-YYGdE~G~~g~~d-p------------ 492 (598)
T PRK10785 451 FKTL------LGG------------------DKARMPLALVWLFTWPGVPCI-YYGDEVGLDGGND-P------------ 492 (598)
T ss_pred hhhh------hCC------------------CHHHHHHHHHHHHhCCCCcEE-EeeeeccccCCCC-C------------
Confidence 7532 111 145778999999999999998 9999999975322 1
Q ss_pred CCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCcEEEEeecCCCcEEEEEc----CeEEEEEECC
Q 003226 684 PGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIVFER----GNLVFVFNFH 758 (837)
Q Consensus 684 ~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R----~~llvv~Nf~ 758 (837)
.+|++|+|.... ..++|++|+|+|++||+++++|+.|...... .+++|+||.| +.++||+|++
T Consensus 493 --------~~R~~m~W~~~~--~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~--~~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 493 --------FCRKPFPWDEAK--QDGALLALYQRMIALRKKSQALRRGGCQVLY--AEGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred --------CccCCcCCCccc--CchHHHHHHHHHHHHHhhCcccccCcEEEEE--eCCCEEEEEEECCCCEEEEEEECC
Confidence 378999998653 4568999999999999999999988644433 2356999999 5799999998
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=4.8e-57 Score=528.36 Aligned_cols=449 Identities=19% Similarity=0.277 Sum_probs=286.5
Q ss_pred CCceEEEEecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHH
Q 003226 315 KSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSL 392 (837)
Q Consensus 315 ~~~~IYE~hv~~f~~~--~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~L 392 (837)
++++|||++|++|.+. ++.|+|+|++ ++||||++||||+||||||++++. .+|||++.||++|+|+|||.++||+|
T Consensus 4 ~~~viYqi~~~~f~d~~~~~~Gdl~gi~-~~Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~~Gt~~df~~L 81 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGDGIGDFPGLT-SKLDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPEFGTIDDFKDF 81 (539)
T ss_pred ccceEEEEehhHhhcCCCCCccCHHHHH-HhHHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChhhCCHHHHHHH
Confidence 6899999999999754 4689999999 699999999999999999999876 36999999999999999999999999
Q ss_pred HHHHHHcCCEEEEeeccCCCCCCccccccC---CCCCCCcccccCC---------------CCCcccC------------
Q 003226 393 IDKAHELGLLVLMDIVHSHASNNVLDGLNM---FDGTDGHYFHSGS---------------RGYHWMW------------ 442 (837)
Q Consensus 393 V~~aH~~GI~VIlDvV~NH~s~~~~~~~~~---fdg~~~~yf~~~~---------------~g~~~~w------------ 442 (837)
|++||++||+||||+|+||++.++.+.... .+.....||.... .+..|.|
T Consensus 82 v~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f 161 (539)
T TIGR02456 82 VDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRF 161 (539)
T ss_pred HHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecc
Confidence 999999999999999999999987533211 1111112332100 0111211
Q ss_pred --CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCc-hHHHHHHHHHHh
Q 003226 443 --DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDM 519 (837)
Q Consensus 443 --~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~a~~fl~~~~~~ 519 (837)
+.++||+.||+||++|++++++|++ +||||||||++++|.... | +.+.+. +..+||+++++.
T Consensus 162 ~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~-~-------------~~~~~~p~~~~f~~~~~~~ 226 (539)
T TIGR02456 162 FSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYERE-G-------------TSCENLPETHEFLKRLRKM 226 (539)
T ss_pred cCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccC-C-------------CccCCCchHHHHHHHHHHH
Confidence 2479999999999999999999998 899999999999885321 1 112232 357899999999
Q ss_pred hhccCCCeEEEEeccCCCCCceeccc-c-CCcccchhcchhhHHHHHHHHhhcchhhhhhhhHHhhc---cCccccccee
Q 003226 520 IHGLYPEAVSIGEDVSGMPTFCIPVQ-D-GGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT---NRRWLEKCVA 594 (837)
Q Consensus 520 v~~~~p~~~~iaE~~~~~p~~~~~~~-~-gglgFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~---~~~~~~~~v~ 594 (837)
+++.+|++++|||.+. ++..+..+. . +..+++..+++.+.......+... ....+...+. ...-....++
T Consensus 227 v~~~~p~~~~iaE~~~-~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~----~~~~l~~~l~~~~~~~~~~~~~~ 301 (539)
T TIGR02456 227 VDREYPGRMLLAEANQ-WPEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRRE----DRSPIIDILKETPDIPDSCQWCI 301 (539)
T ss_pred HHHhCCCeEEEEEeCC-CHHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccC----CHHHHHHHHHHhhhccCCCceee
Confidence 9999999999999853 232222222 1 111344433333322111111111 0111111111 0011112357
Q ss_pred cccCcccccccccc------h-hhhccChhHHhhhhc-CCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCC
Q 003226 595 YAESHDQALVGDKT------I-AFWLMDKDMYDFMAL-DRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE 666 (837)
Q Consensus 595 y~esHD~~r~g~~t------~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~ 666 (837)
|++|||+.++.--+ + +.+..+......... .+.. .......++.|++++++||+||+|+| |||+|+||.+
T Consensus 302 fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~-s~~~~~~~~~kla~~~l~tlpG~P~I-YYG~EiGm~~ 379 (539)
T TIGR02456 302 FLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLA-PLLDNDRRRIELLTALLLSLPGSPIL-YYGDEIGMGD 379 (539)
T ss_pred ecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhh-hcccccHHHHHHHHHHHHhCCCceEE-EechhhcCcC
Confidence 99999997642100 0 000000000000000 0000 00111245679999999999999988 9999999964
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcc--------------------------------cccchHHHHHH
Q 003226 667 WIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD--------------------------------YLRYRGMQEFD 714 (837)
Q Consensus 667 ~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~--------------------------------~~~~~~l~~f~ 714 (837)
-.. ..+.+.+|.+|+|.... .....++++||
T Consensus 380 ~~~-----------------~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~y 442 (539)
T TIGR02456 380 NIW-----------------LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWT 442 (539)
T ss_pred CCc-----------------cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHH
Confidence 110 01122345555554321 12346899999
Q ss_pred HHHHHHHHHhccCCCCcEEEEeecCCCcEEEEEc----CeEEEEEECCCCCcccceEEeccC-Cc-eEEEEEeCCCCccC
Q 003226 715 RAMQHLEEKYGFMTSEHQYVSRKDQGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLK-PG-KYKIVLDSDYPLFG 788 (837)
Q Consensus 715 ~~Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R----~~llvv~Nf~~~~~~~~~~i~v~~-~g-~~~~vl~sd~~~~g 788 (837)
|+||+||+++++|..|...... ..+++|++|.| +.++||+|++. + ...+.|.++. .| .+.++++++..
T Consensus 443 r~Li~lRk~~~aL~~G~~~~l~-~~~~~v~~f~R~~~~~~vlVv~N~s~-~-~~~v~l~~~~~~~~~~~dl~~~~~~--- 516 (539)
T TIGR02456 443 RRVLHVRKAHPAFGRGSLTFLP-TGNRRVLAFLREYEGERVLCVFNFSR-N-PQAVELDLSEFAGRVPVELIGGAPF--- 516 (539)
T ss_pred HHHHHHHhcCcccccCceEEEe-cCCCCEEEEEEEcCCcEEEEEEeCCC-C-CEEeeccccccccCcceecccCCcc---
Confidence 9999999999999888543322 23456999999 57999999994 2 3344554432 12 34445432210
Q ss_pred CccccCCCcccccccCccCCCCeEEEEEECCceEEEEEE
Q 003226 789 GYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYAL 827 (837)
Q Consensus 789 g~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~ 827 (837)
.. ...+.++|+|||+++++|.+
T Consensus 517 -----------~~------~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 517 -----------PP------VGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred -----------cc------ccCCcceEEECCceEEEEEe
Confidence 00 00122789999999999984
No 22
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=4.2e-56 Score=518.93 Aligned_cols=451 Identities=17% Similarity=0.227 Sum_probs=294.7
Q ss_pred CCCCceEEEEecCCCCC--CCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHH
Q 003226 313 KPKSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK 390 (837)
Q Consensus 313 ~~~~~~IYE~hv~~f~~--~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk 390 (837)
..++.+|||+++++|.+ .++.|+|+|++ ++||||++||||+||||||++++.. .|||++.||++|+++|||.+||+
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~-~~ldyl~~lGv~~i~l~P~~~~~~~-~~gY~~~d~~~id~~~Gt~~d~~ 84 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTGSGTGDLRGVT-QRLDYLQKLGVDAIWLTPFYVSPQV-DNGYDVANYTAIDPTYGTLDDFD 84 (551)
T ss_pred hhhcCeEEEEEchHhhcCCCCCCcCHHHHH-HhhHHHHhCCCCEEEECCCCCCCCC-CCCCCcccCCCcCcccCCHHHHH
Confidence 34788999999999964 35689999999 6999999999999999999988753 58999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCC--cccc--c------------CCCCCcccCC-----------
Q 003226 391 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG--HYFH--S------------GSRGYHWMWD----------- 443 (837)
Q Consensus 391 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~--~yf~--~------------~~~g~~~~w~----------- 443 (837)
+||++||++||+||||+|+||++..|.+.....+...+ .||. . ...+..|.|+
T Consensus 85 ~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f 164 (551)
T PRK10933 85 ELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLF 164 (551)
T ss_pred HHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecc
Confidence 99999999999999999999999987543222111111 1221 0 0112222232
Q ss_pred ---CcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhh
Q 003226 444 ---SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMI 520 (837)
Q Consensus 444 ---~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v 520 (837)
.++||+.||+|+++|+++++||++ +||||||||+|++|... .+++.........++. ...+..+||+++++.+
T Consensus 165 ~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 240 (551)
T PRK10933 165 APEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKD-QDFPDDLDGDGRRFYT--DGPRAHEFLQEMNRDV 240 (551)
T ss_pred cccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcC-CCCCCCcccccccccC--CChHHHHHHHHHHHHh
Confidence 479999999999999999999997 99999999999998643 1221110001111111 1234568999998776
Q ss_pred hccCCCeEEEEeccCCCCCceecccc-CC----cccchhcchhhHHHHHHHHhhc---chhhhhhhhHH-------hhcc
Q 003226 521 HGLYPEAVSIGEDVSGMPTFCIPVQD-GG----VGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVH-------TMTN 585 (837)
Q Consensus 521 ~~~~p~~~~iaE~~~~~p~~~~~~~~-gg----lgFd~~~~~~~~d~~~~~l~~~---~~~~~~~~l~~-------~l~~ 585 (837)
.. .+++++|||.|...+..+..+.. .+ +.|+|.. ....++.+. ...|....+.. .+..
T Consensus 241 ~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (551)
T PRK10933 241 FT-PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHH------LKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHN 313 (551)
T ss_pred hc-ccCcEEEEeecCCCHHHHHHhhcccCCeeeeEecHHH------hhhhhccCCcccccccCHHHHHHHHHHHHHhhcc
Confidence 43 34789999998654433333321 11 2333321 011111110 00111111111 1112
Q ss_pred CcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCC
Q 003226 586 RRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHP 665 (837)
Q Consensus 586 ~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~ 665 (837)
..|. ..|++|||+.|+.++- ..+. ....+.+|++++++||+||+|+| |||+|+||.
T Consensus 314 ~~~~---~~fl~NHD~~R~~sr~----g~~~----------------~~~~~~aklla~ll~tlpG~P~I-YyGeEiGm~ 369 (551)
T PRK10933 314 VAWN---ALFWCNHDQPRIVSRF----GDEG----------------EYRVPAAKMLAMVLHGMQGTPYI-YQGEEIGMT 369 (551)
T ss_pred cCee---ccccCCCCcccHHHHc----CCch----------------hHHHHHHHHHHHHHHhCCCceEE-EeecccCCC
Confidence 2232 5789999999975321 1010 11234578899999999999998 999999997
Q ss_pred CCCCCCCC-CCCCCCC----------------CcCCCCCCCCcccCcccCCCCccc------------------------
Q 003226 666 EWIDFPRG-DQRLPNG----------------QFVPGNNFSYDKCRRRFDLGDADY------------------------ 704 (837)
Q Consensus 666 ~~~d~p~~-~~~~~~~----------------~~~~gn~~s~~~~r~~~~w~~~~~------------------------ 704 (837)
+. .+++- +-+++.. ....-+..+++.+|++|+|.+..+
T Consensus 370 ~~-~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q 448 (551)
T PRK10933 370 NP-HFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAA 448 (551)
T ss_pred CC-CCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHH
Confidence 62 22110 0011100 000122357888999999987542
Q ss_pred -ccchHHHHHHHHHHHHHHHhccCCCCcEEEEeecCCCcEEEEEc----CeEEEEEECCCCCcccceEEeccCCceEEEE
Q 003226 705 -LRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIV 779 (837)
Q Consensus 705 -~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R----~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~v 779 (837)
....++++|||+||+||+++++|..|.... ....+++|++|.| +.++||+|++. ....+.+. ...+.|+++
T Consensus 449 ~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~-~~~~~~~v~af~R~~~~~~~lvv~N~s~--~~~~~~~~-~~~~~~~~~ 524 (551)
T PRK10933 449 LADEDSVFYTYQKLIALRKQEPVLTWGDYQD-LLPNHPSLWCYRREWQGQTLLVIANLSR--EPQPWQPG-QMRGNWQLL 524 (551)
T ss_pred hcCcccHHHHHHHHHHHhhcChhhccceeEE-eccCCCcEEEEEEEcCCcEEEEEEECCC--CCeeeecC-cccCCceEE
Confidence 123689999999999999999998885333 2223457999999 57999999993 22333333 124678888
Q ss_pred EeCCCCccCCccccCCCcccccccCccCCCCeEEEEEECCceEEEEEE
Q 003226 780 LDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYAL 827 (837)
Q Consensus 780 l~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~ 827 (837)
|++..... .. ...++|||.++.|+..
T Consensus 525 l~~~~~~~--------------------~~--~~~~~L~p~~~~~~~~ 550 (551)
T PRK10933 525 MHNYEEAS--------------------PQ--PCAMTLRPFEAVWWLQ 550 (551)
T ss_pred eecCcccc--------------------CC--CCcEEECCCeEEEEEe
Confidence 77421100 00 0348899999999874
No 23
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=9.3e-56 Score=516.69 Aligned_cols=455 Identities=16% Similarity=0.180 Sum_probs=292.2
Q ss_pred CCceEEEEecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHH
Q 003226 315 KSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSL 392 (837)
Q Consensus 315 ~~~~IYE~hv~~f~~~--~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~L 392 (837)
+..+|||+|+++|.+. ++.|+|+|++ ++||||++||||+|||+||++++.. .+||+++||++|+|+|||.++|++|
T Consensus 3 ~~~v~Y~i~~~~f~~~~~~~~G~~~gi~-~~l~yl~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~l 80 (543)
T TIGR02403 3 QKKVIYQIYPKSFYDSTGDGTGDLRGII-EKLDYLKKLGVDYIWLNPFYVSPQK-DNGYDVSDYYAINPLFGTMADFEEL 80 (543)
T ss_pred ccCEEEEEEhHHHhcCCCCCccCHHHHH-HhHHHHHHcCCCEEEECCcccCCCC-CCCCCccccCccCcccCCHHHHHHH
Confidence 5789999999999753 5689999999 6999999999999999999998763 4799999999999999999999999
Q ss_pred HHHHHHcCCEEEEeeccCCCCCCccccccCC--CCCCCcccc-cCC------------CCCcccC--------------C
Q 003226 393 IDKAHELGLLVLMDIVHSHASNNVLDGLNMF--DGTDGHYFH-SGS------------RGYHWMW--------------D 443 (837)
Q Consensus 393 V~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f--dg~~~~yf~-~~~------------~g~~~~w--------------~ 443 (837)
|++||++||+||||+|+||++.+|.+..... ++....||. ... .+..|.| .
T Consensus 81 v~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~ 160 (543)
T TIGR02403 81 VSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKT 160 (543)
T ss_pred HHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCc
Confidence 9999999999999999999999875332111 111111221 100 0111222 2
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhcc
Q 003226 444 SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 523 (837)
Q Consensus 444 ~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~ 523 (837)
.++||++||+|+++|+++++||++ +||||||||+|++|..... +...-... +..+. .......+||+++++.+++
T Consensus 161 ~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~-~~~~~~~~-~~~~~-~~~~~~~~f~~~~~~~~~~- 235 (543)
T TIGR02403 161 QADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQF-FEDDEIGD-GRRFY-TDGPRVHEYLQEMNQEVFG- 235 (543)
T ss_pred CCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcc-cCCCCCCC-Ccccc-CCChHHHHHHHHHHHHhhc-
Confidence 489999999999999999999998 7999999999999853311 10000000 00000 1123457899999999988
Q ss_pred CCCeEEEEeccCCCCCceecccc-CCcccchhcchhhHHHHHHHHhhc---chhhhhhhhHHhhc----cCc-cccccee
Q 003226 524 YPEAVSIGEDVSGMPTFCIPVQD-GGVGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVHTMT----NRR-WLEKCVA 594 (837)
Q Consensus 524 ~p~~~~iaE~~~~~p~~~~~~~~-gglgFd~~~~~~~~d~~~~~l~~~---~~~~~~~~l~~~l~----~~~-~~~~~v~ 594 (837)
.|++++|||.|...+..+..+.. .+-.||..+++.. ....+..+. ...+....+...+. ... .....++
T Consensus 236 ~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (543)
T TIGR02403 236 DNDSVTVGEMSSTTIENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWNAL 313 (543)
T ss_pred cCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHHHHhccccCcceee
Confidence 89999999999765543333322 1222343333221 111111110 00111111111110 000 1112357
Q ss_pred cccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCC
Q 003226 595 YAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGD 674 (837)
Q Consensus 595 y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~ 674 (837)
|++|||+.|+..+. +. + . ....+.+|++++++||+||+|+| |||||+||.+....+-.+
T Consensus 314 fl~NHD~~R~~s~~------g~--------~-~-----~~~~~~~k~~a~ll~tlpG~P~I-YYGdEiGm~~~~~~~~~~ 372 (543)
T TIGR02403 314 FWNNHDQPRAVSRF------GD--------D-G-----EYRVESAKMLAAAIHLLRGTPYI-YQGEEIGMTNPKFTNIED 372 (543)
T ss_pred ecCCCChhhHHHhc------CC--------c-h-----hhHHHHHHHHHHHHHHCCCCeEE-EeccccCCCCCCCCCHHH
Confidence 99999999975321 10 0 0 01123568888899999999988 999999997531100000
Q ss_pred CCCCCCC----------------cCCCCCCCCcccCcccCCCCccc-------------------------ccchHHHHH
Q 003226 675 QRLPNGQ----------------FVPGNNFSYDKCRRRFDLGDADY-------------------------LRYRGMQEF 713 (837)
Q Consensus 675 ~~~~~~~----------------~~~gn~~s~~~~r~~~~w~~~~~-------------------------~~~~~l~~f 713 (837)
-.++... ...-+..+++.+|++|+|..... ....++++|
T Consensus 373 ~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~ 452 (543)
T TIGR02403 373 YRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYF 452 (543)
T ss_pred hcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHH
Confidence 0010000 00112346778999999986421 124689999
Q ss_pred HHHHHHHHHHhccCCCCcEEEEeecCCCcEEEEEc----CeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCC
Q 003226 714 DRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGG 789 (837)
Q Consensus 714 ~~~Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R----~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg 789 (837)
||+||+||+++++|..|...... ..+++|++|.| +.++||+|++. + ...+.|+.. .+.++.++++....
T Consensus 453 yr~Li~lRk~~~aL~~G~~~~~~-~~~~~v~a~~R~~~~~~~lVv~N~s~-~-~~~~~l~~~-~~~~~~~~~~~~~~--- 525 (543)
T TIGR02403 453 YQKLIALRKSEPVITDGDYQFLL-PDDPSVWAYTRTYKNQKLLVINNFYG-E-EKTIELPLD-LLSGKILLSNYEEA--- 525 (543)
T ss_pred HHHHHHHHhhcccccCccEEEee-cCCCcEEEEEEEcCCcEEEEEEECCC-C-CeEeeCCcc-CcCceEEEecCCCc---
Confidence 99999999999999888543322 23346999999 57999999994 2 233444321 23455666542210
Q ss_pred ccccCCCcccccccCccCCCCeEEEEEECCceEEEEE
Q 003226 790 YKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~ 826 (837)
. . ...+.|||++++|+.
T Consensus 526 ~----------------~----~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 526 E----------------K----DAKLELKPYEAIVLL 542 (543)
T ss_pred C----------------C----CCcEEECCceEEEEe
Confidence 0 0 034899999999986
No 24
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-54 Score=502.11 Aligned_cols=552 Identities=20% Similarity=0.299 Sum_probs=353.3
Q ss_pred cccCCcEE---eCCcEEEEEeCCCcCEEEEEe-ecCCCCCC--ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003226 193 YEKFGFIR---SDTGITYREWAPGAKSASLIG-DFNNWNPN--ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (837)
Q Consensus 193 y~~lG~~~---~~~gv~fr~WAP~A~~V~L~g-Dfn~w~~~--~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~ 266 (837)
.-++|+++ ...|+.|.+|+.+|++|.|+. |...-... .+++......+|.+.+|+... |..|.|++.
T Consensus 17 ~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~-------g~~y~yr~~ 89 (697)
T COG1523 17 PYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKP-------GQVYGYRVH 89 (697)
T ss_pred cccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCce-------eeEEEEecC
Confidence 45899997 458999999999999999995 32221111 256766666799999998654 668999987
Q ss_pred CCCC---------ccccCCccceeeccCCCCC-------------------------CCCcEEeCCCccccccccCCCC-
Q 003226 267 TPSG---------IKDSIPAWIKFSVQAPGEI-------------------------PYNGIYYDPPEEEKYVFQHPQP- 311 (837)
Q Consensus 267 ~~~~---------~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~d~~~~~~~~~~~~~~- 311 (837)
++.. .+..++||++......... ..++++.++. +.|+..++
T Consensus 90 g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~----~~w~~~~~~ 165 (697)
T COG1523 90 GPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPL----FDWENDKPP 165 (697)
T ss_pred CCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccc----cccccCCCC
Confidence 6531 1234678887665332100 1145555552 77876543
Q ss_pred CCC-CCceEEEEecCCCC-CC-----CCCCCHHhhHhhh--hhHHHHcCCCEEEECCccccC---------CCCCCCCcc
Q 003226 312 KKP-KSLRIYEAHVGMSS-TE-----PIINTYANFRDDV--LPRIKRLGYNAVQIMAVQEHS---------YYASFGYHV 373 (837)
Q Consensus 312 ~~~-~~~~IYE~hv~~f~-~~-----~~~G~~~~~~~~~--LdyLk~LGvt~I~L~Pi~e~~---------~~~s~GY~~ 373 (837)
..| +++||||+|||+|| .+ ...|||.+|+ +. |+|||+||||||+||||+.+. ...+|||+|
T Consensus 166 ~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~-~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 166 RIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLA-EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCccceEEEEeeecccccCCCCCchhhccceehhc-cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 334 88999999999998 33 3459999999 46 999999999999999999863 234799999
Q ss_pred cccccCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeccCCCCCCc-cccccCCCCCCCcccc-cCCCCCc--ccC
Q 003226 374 TNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNV-LDGLNMFDGTDGHYFH-SGSRGYH--WMW 442 (837)
Q Consensus 374 ~~y~avd~~~Gt-------~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~-~~~~~~fdg~~~~yf~-~~~~g~~--~~w 442 (837)
.+||+|+++|.+ ..|||.||+++|++||+||||||+|||+... ......|+|.++.||+ ..+.|+. +.-
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TG 324 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTG 324 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCc
Confidence 999999999976 4599999999999999999999999997542 2334578898887554 4444443 233
Q ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhc
Q 003226 443 DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHG 522 (837)
Q Consensus 443 ~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~ 522 (837)
+...+|.++|+||++|+|+|+||++||||||||||.|+.+.....+ + +..+ .++..+. . ..
T Consensus 325 cGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~----~------------~~~~-~l~~~~~-~-~p 385 (697)
T COG1523 325 CGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETML----F------------DINA-NLFLAGE-G-DP 385 (697)
T ss_pred cCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccc----c------------ccCc-chhhhcc-C-Cc
Confidence 4578999999999999999999999999999999999876432110 0 0000 0111110 0 11
Q ss_pred cCCCeEEEEeccCCCCCceeccccCCcccc--hh---cchhhHHHHHHHHhhcchhhhhhhhHHhhcc--------Cccc
Q 003226 523 LYPEAVSIGEDVSGMPTFCIPVQDGGVGFD--YR---LQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWL 589 (837)
Q Consensus 523 ~~p~~~~iaE~~~~~p~~~~~~~~gglgFd--~~---~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~--------~~~~ 589 (837)
..-...+|||.|.-.+. -++.|. |. ++ ++-.+.|..+.++.+... ..+.+...+.+ .+-+
T Consensus 386 ~l~~~kliAepwD~g~~---gyqvG~--Fpd~~~~aewng~~rD~vr~F~~G~~~--~~~~~a~rl~gS~d~~~~~~~~p 458 (697)
T COG1523 386 VLSGVKLIAEPWDIGPG---GYQVGN--FPDSPRWAEWNGRFRDDVRRFWRGDAG--LVGEFAKRLAGSSDLYKRNGRRP 458 (697)
T ss_pred cccCceeeecchhhcCC---Cccccc--CCCccchhhhCCcccccccceeeCCCc--cHHHHHHHhhcCcchhhccCCCc
Confidence 12244588888854331 111121 22 22 232333333444443211 11222222221 1335
Q ss_pred ccceecccCcccccccccchhhhc-cC---hh---------HHhhhh-cCCCCCchhhhHHHHH-HHHHHHHHhCCCCce
Q 003226 590 EKCVAYAESHDQALVGDKTIAFWL-MD---KD---------MYDFMA-LDRPSTPRIDRGIALH-KMIRLVTMGLGGEAY 654 (837)
Q Consensus 590 ~~~v~y~esHD~~r~g~~t~~~~~-~~---~~---------~~~~~~-~~~~~~~~~~~~~a~~-k~a~~l~ltlpG~p~ 654 (837)
.++|+|+.+||.-++.|.. ++-. .+ .+ ..+... .....++.+..+..+. +.+.+.++...|+|.
T Consensus 459 ~~sINyv~aHDgfTL~D~v-sy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pm 537 (697)
T COG1523 459 SQSINYVTAHDGFTLWDLV-SYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPM 537 (697)
T ss_pred cceeeEEeecCCCcHhHhh-hhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCcc
Confidence 6899999999998875531 1100 00 01 000011 1122334444333333 333445677889986
Q ss_pred EeccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCccc--CcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCC-c
Q 003226 655 LNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKC--RRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSE-H 731 (837)
Q Consensus 655 L~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~--r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g-~ 731 (837)
+ -+|+|+|+..+ ||+++|+.. .+.++|.. ..++.+.+|.+.||+|||++++++.. +
T Consensus 538 l-~~gDe~~rtq~-----------------gnnNsYcqdn~inwlDW~~---~~~~~l~~f~~~lIaLRk~~~af~~~~f 596 (697)
T COG1523 538 L-LAGDEFGRTQY-----------------GNNNAYCQDNEINWLDWST---EANNDLVEFTKGLIALRKAHPAFRRRSF 596 (697)
T ss_pred c-ccccccccccc-----------------cccccccCCcccceeccCc---cccHHHHHHHHHHHHHhhhcchhcccch
Confidence 6 99999999763 899999865 45888882 46789999999999999999988652 1
Q ss_pred ----------EEE----------EeecCCCcEEEEEc-C---eEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCcc
Q 003226 732 ----------QYV----------SRKDQGDRVIVFER-G---NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLF 787 (837)
Q Consensus 732 ----------~~i----------~~~~~~~~VlaF~R-~---~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~ 787 (837)
.|. .+.......+++.. + +++|++|..+ ....++++... ++|..++++-...
T Consensus 597 ~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~~~~~lv~~N~~~--~~~~~~lp~~~-~~~~~~~~~~~~~- 672 (697)
T COG1523 597 FEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGDKERLLVLINATA--EPVEFELPEDE-GKWAGLVDTSTPP- 672 (697)
T ss_pred hhccCCCcccceeccCCeeechhcccCCCCceEEEEecCCCccEEEEecCCc--cccceeccccc-CcceeeecccCCC-
Confidence 111 01122233455544 3 7999999663 23445554333 6677776542210
Q ss_pred CCccccCCCcccccccCccCCCCeEEEEEECCceEEEEEEec
Q 003226 788 GGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALAD 829 (837)
Q Consensus 788 gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~~ 829 (837)
+. . ...+.++++|+.||....
T Consensus 673 -~~----------------~----~~~~~~~~~s~~vl~~~~ 693 (697)
T COG1523 673 -GF----------------D----IREVSLPGRSVLVLTRRS 693 (697)
T ss_pred -Cc----------------c----cceeecCCcEEEEEeecc
Confidence 00 0 015889999999997543
No 25
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.5e-51 Score=485.20 Aligned_cols=368 Identities=17% Similarity=0.226 Sum_probs=249.0
Q ss_pred CCCCCCceEEEEecCCCCCCC------------C--------CCCHHhhHhhhhhHHHHcCCCEEEECCccccC------
Q 003226 311 PKKPKSLRIYEAHVGMSSTEP------------I--------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHS------ 364 (837)
Q Consensus 311 ~~~~~~~~IYE~hv~~f~~~~------------~--------~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~------ 364 (837)
+...++.+||++.+..|.+.+ + -|+|+|++ ++||||++||||+|||+||+++.
T Consensus 184 ~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~-~kLdyl~~LGv~aIwlsPi~~~~~~~~~~ 262 (683)
T PRK09505 184 PFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLT-EKLDYLQQLGVNALWISSPLEQIHGWVGG 262 (683)
T ss_pred ChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHH-HhhHHHHHcCCCEEEeCcccccccccccc
Confidence 334578899999999885221 1 28999999 69999999999999999999872
Q ss_pred -------CCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCcccc-----ccC-C-------C
Q 003226 365 -------YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-----LNM-F-------D 424 (837)
Q Consensus 365 -------~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~-----~~~-f-------d 424 (837)
.+++|||++.||+.|+++|||.+|||+||++||++||+||||+|+||++..+... +.. + .
T Consensus 263 g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~ 342 (683)
T PRK09505 263 GTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKK 342 (683)
T ss_pred ccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcccccc
Confidence 3577999999999999999999999999999999999999999999999532100 000 0 0
Q ss_pred CCC----------CcccccC--------CCCCcccC-------------------------CCcCCCCC-----------
Q 003226 425 GTD----------GHYFHSG--------SRGYHWMW-------------------------DSRLFNYG----------- 450 (837)
Q Consensus 425 g~~----------~~yf~~~--------~~g~~~~w-------------------------~~~~ln~~----------- 450 (837)
+.. +.+|+.. ...+...| ..|+||++
T Consensus 343 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~ 422 (683)
T PRK09505 343 TLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFY 422 (683)
T ss_pred ccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhh
Confidence 000 0111110 00111111 12556664
Q ss_pred ------------CHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHH
Q 003226 451 ------------SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVND 518 (837)
Q Consensus 451 ------------~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~ 518 (837)
||+|+++|++++++|++++||||||+|+|+||. .+||+++++
T Consensus 423 ~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~--------------------------~~FW~~~~~ 476 (683)
T PRK09505 423 ANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVE--------------------------LPAWQQLKQ 476 (683)
T ss_pred hcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCC--------------------------HHHHHHHHH
Confidence 569999999999999999999999999999983 246677766
Q ss_pred hh-------hccCC-------CeEEEEeccCCCCCceeccccCCcccchhcchhhHHHHHHHHhhcchhhhhhhhHHhhc
Q 003226 519 MI-------HGLYP-------EAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT 584 (837)
Q Consensus 519 ~v-------~~~~p-------~~~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~ 584 (837)
.+ ++.+| ++++|||.|...+... .+... +||..+++.+.......+... ..+..+...+.
T Consensus 477 ~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~-~y~~~--~fDsv~NF~~~~~~~~~~~~~---~~l~~~~~~~~ 550 (683)
T PRK09505 477 EASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKS-DYYRH--GFDAMINFDYQEQAAKAVDCL---AQMDPTYQQMA 550 (683)
T ss_pred HHHHHHHHHHHhccccccccCCeEEEEEecCCchhhH-HHHhh--cCccccCchHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 55 23334 5899999996544322 22222 344444444332222211100 00111111111
Q ss_pred cCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCC
Q 003226 585 NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH 664 (837)
Q Consensus 585 ~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~ 664 (837)
...-....++|++|||+.|+.+.. . ..+++|++++++|++||+|+| |||+|+||
T Consensus 551 ~~~~~~~~l~FLdNHDt~Rf~s~~------~-------------------~~~~~klAaall~tlpGiP~I-YYGdEiGm 604 (683)
T PRK09505 551 EKLQDFNVLSYLSSHDTRLFFEGG------Q-------------------SYAKQRRAAELLLLAPGAVQI-YYGDESAR 604 (683)
T ss_pred hhcCccceeecccCCChhhhhhhc------C-------------------chHHHHHHHHHHHhCCCCcEE-EechhhCc
Confidence 100112357899999999975321 0 014678899999999999988 99999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCcEEEEeecCCCcEE
Q 003226 665 PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVI 744 (837)
Q Consensus 665 ~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~~~~Vl 744 (837)
..... + ......+|++|+|.+.. ....+|++|+|+|++||+++++|+.|..... ..++++
T Consensus 605 ~gg~~---------------g-~DP~~~~R~~M~W~~~~-~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l---~~~~~~ 664 (683)
T PRK09505 605 PFGPT---------------G-SDPLQGTRSDMNWQEVS-GKSAALLAHWQKLGQFRARHPAIGAGKQTTL---SLKQYY 664 (683)
T ss_pred cCCCC---------------C-CCCcccccccCCccccc-cchHHHHHHHHHHHHHHhhCHHhhCCceEEe---ccCCEE
Confidence 64210 0 11122488999998632 2456899999999999999999998854332 235799
Q ss_pred EEEc----CeEEEEEEC
Q 003226 745 VFER----GNLVFVFNF 757 (837)
Q Consensus 745 aF~R----~~llvv~Nf 757 (837)
+|.| +.++||+|=
T Consensus 665 aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 665 AFVREHGDDKVMVVWAG 681 (683)
T ss_pred EEEEEeCCCEEEEEEeC
Confidence 9999 579999883
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=4.1e-50 Score=464.28 Aligned_cols=375 Identities=17% Similarity=0.190 Sum_probs=257.8
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCccccCC-CCCCCCcccccc---------cCCCCCCCHHHHHHHHHHHHHcCCEE
Q 003226 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-YASFGYHVTNFF---------APSSRCGTPDDLKSLIDKAHELGLLV 403 (837)
Q Consensus 334 G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~-~~s~GY~~~~y~---------avd~~~Gt~edfk~LV~~aH~~GI~V 403 (837)
.+|++|+ ++||||++||||+|||+||++++. ..+|||+++||| +|+|+|||.+|||+||++||++||+|
T Consensus 19 ~~~~~I~-~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLA-ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHH-HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 3677899 699999999999999999999874 356999999999 79999999999999999999999999
Q ss_pred EEeeccCCCCCCcc-cccc-----------------------CCC--CCCC-------cccccCCCC-------------
Q 003226 404 LMDIVHSHASNNVL-DGLN-----------------------MFD--GTDG-------HYFHSGSRG------------- 437 (837)
Q Consensus 404 IlDvV~NH~s~~~~-~~~~-----------------------~fd--g~~~-------~yf~~~~~g------------- 437 (837)
|||+|+||++.... .++. .|+ +... .|++.....
T Consensus 98 i~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
T PRK09441 98 YADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKI 177 (479)
T ss_pred EEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEe
Confidence 99999999986432 1100 010 1000 122111100
Q ss_pred --CcccC--------------CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCccccc
Q 003226 438 --YHWMW--------------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 501 (837)
Q Consensus 438 --~~~~w--------------~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~ 501 (837)
....| ..++||++||+|+++|++++++|++++||||||+|+|++|.
T Consensus 178 ~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~------------------ 239 (479)
T PRK09441 178 VGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID------------------ 239 (479)
T ss_pred cCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC------------------
Confidence 00112 14799999999999999999999999999999999999982
Q ss_pred CcccCchHHHHHHHHHHhhhccC-CCeEEEEeccCCCCCceeccccC----CcccchhcchhhHHHHHHHHhhcchhhhh
Q 003226 502 GFATDVDAVVYLMLVNDMIHGLY-PEAVSIGEDVSGMPTFCIPVQDG----GVGFDYRLQMAIADKWIELLKKRDEDWKM 576 (837)
Q Consensus 502 g~~~d~~a~~fl~~~~~~v~~~~-p~~~~iaE~~~~~p~~~~~~~~g----glgFd~~~~~~~~d~~~~~l~~~~~~~~~ 576 (837)
..||+.+++.+++.. |++++|||.|.+.+..+..+..+ ...|||.++..+.+.+.. . ....+
T Consensus 240 --------~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~---~--~~~~l 306 (479)
T PRK09441 240 --------AWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQ---G--RDYDM 306 (479)
T ss_pred --------HHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHHHHHHHhc---C--Cccch
Confidence 248899999988765 68999999998776554444332 135888877766543321 1 11122
Q ss_pred hhhHHhhccCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCC-CCceE
Q 003226 577 GAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYL 655 (837)
Q Consensus 577 ~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlp-G~p~L 655 (837)
..+.........+.+.++|++|||+.|+... .+. ......++|.+++||+| |+|+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~FldNHD~~R~~~~------~~~-----------------~~~~~~~lA~a~llT~p~GiP~I 363 (479)
T PRK09441 307 RNIFDGTLVEADPFHAVTFVDNHDTQPGQAL------ESP-----------------VEPWFKPLAYALILLREEGYPCV 363 (479)
T ss_pred HhhhCcchhhcCcccceeeeccccCCCcccc------ccc-----------------ccccchHHHHHHHHhCCCCceee
Confidence 2222111112345567899999999998531 010 00112368899999999 99988
Q ss_pred eccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCcEEEE
Q 003226 656 NFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVS 735 (837)
Q Consensus 656 ~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~ 735 (837)
|||+|+|+.+..+ ...+++++++|++||++++ .|.....
T Consensus 364 -YYGdE~g~~g~~~-------------------------------------~~~l~~~i~~Li~lRk~~~---~G~~~~~ 402 (479)
T PRK09441 364 -FYGDYYGASGYYI-------------------------------------DMPFKEKLDKLLLARKNFA---YGEQTDY 402 (479)
T ss_pred -EeccccCCCCCcc-------------------------------------cchHHHHHHHHHHHHHHhC---CCCeeEe
Confidence 9999999854100 1358999999999999864 3433222
Q ss_pred eecCCCcEEEEEc------CeEEEEEECCCCCcccceEEeccC-CceEEEEEeCCCCccCCccccCCCcccccccCccCC
Q 003226 736 RKDQGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCLK-PGKYKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYDD 808 (837)
Q Consensus 736 ~~~~~~~VlaF~R------~~llvv~Nf~~~~~~~~~~i~v~~-~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~ 808 (837)
..+++++||.| +.+|||+|.+. .....+.++... .+.|++++..... ...+ .
T Consensus 403 --~~~~~~~~~~R~~~~~~~~vvvvinn~~-~~~~~~~~~~~~~~~~~~d~~~~~~~------------~~~~------~ 461 (479)
T PRK09441 403 --FDHPNCIGWTRSGDEENPGLAVVISNGD-AGEKTMEVGENYAGKTWRDYTGNRQE------------TVTI------D 461 (479)
T ss_pred --ecCCCEEEEEEecCCCCccEEEEEECCC-CCcEEEEeCccCCCCEeEhhhCCCCC------------eEEE------C
Confidence 24467999999 24888998873 222234454322 3557776642110 0100 1
Q ss_pred CCeEEEEEECCceEEEE
Q 003226 809 RPHSFLVYAPSRTAVVY 825 (837)
Q Consensus 809 ~~~~~~l~Lp~~s~~Vl 825 (837)
..+.+.|+||++++.||
T Consensus 462 ~~G~~~~~l~~~s~~i~ 478 (479)
T PRK09441 462 EDGWGTFPVNGGSVSVW 478 (479)
T ss_pred CCCeEEEEECCceEEEe
Confidence 22458999999999997
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=6.1e-45 Score=396.17 Aligned_cols=276 Identities=24% Similarity=0.384 Sum_probs=193.3
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCC
Q 003226 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 334 G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
|||+||+ ++|||||+||||+||||||++.+. .+|||+|+||++|+|+|||.+|||+||++||++||+||||+|+||++
T Consensus 1 Gd~~gi~-~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 1 GDFRGII-DKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SSHHHHH-HTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CCHHHHH-HhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 8999999 699999999999999999999876 68999999999999999999999999999999999999999999999
Q ss_pred CCcccc---ccCCCCCCCcccc-------------cCCCCCcc-----------cCCCcCCCCCCHHHHHHHHHHHHHHH
Q 003226 414 NNVLDG---LNMFDGTDGHYFH-------------SGSRGYHW-----------MWDSRLFNYGSWEVLRFLLSNARWWL 466 (837)
Q Consensus 414 ~~~~~~---~~~fdg~~~~yf~-------------~~~~g~~~-----------~w~~~~ln~~~~eVr~~l~~~l~~Wl 466 (837)
.++.+. ...++.....||. ....+..+ ..+.++||++|++||++|++++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~ 158 (316)
T PF00128_consen 79 DDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI 158 (316)
T ss_dssp TTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh
Confidence 998542 1111211122222 00111111 12347899999999999999999999
Q ss_pred HHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCCceeccc-
Q 003226 467 EEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQ- 545 (837)
Q Consensus 467 ~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~- 545 (837)
+ +||||||||++++|. ..+|++++..+++..|++++|||.+.+....+....
T Consensus 159 ~-~giDGfR~D~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~ 211 (316)
T PF00128_consen 159 E-EGIDGFRLDAAKHIP--------------------------KEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAY 211 (316)
T ss_dssp H-TTESEEEETTGGGSS--------------------------HHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHH
T ss_pred h-ceEeEEEEccccccc--------------------------hhhHHHHhhhhhhhccccceeeeeccCCccccchhhh
Confidence 9 679999999999883 258999999999888999999999976543222221
Q ss_pred cCCcc----cchhcchhhHHHHHHHHhhcchhhhhhhhHHh----hccCcccccceecccCcccccccccchhhhccChh
Q 003226 546 DGGVG----FDYRLQMAIADKWIELLKKRDEDWKMGAIVHT----MTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKD 617 (837)
Q Consensus 546 ~gglg----Fd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~----l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~ 617 (837)
.+..+ +++... .+.......... .......+... ..........++|++|||+.|+..+. .
T Consensus 212 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~------~-- 280 (316)
T PF00128_consen 212 DGYFDLDSVFDFPDY-GLRSSFFDFWRH--GDGDASDLANWLSSWQSSYPDPYRAVNFLENHDTPRFASRF------G-- 280 (316)
T ss_dssp HGTTSHSEEEHHHHH-HHHHHHHHHHTT--TSSHHHHHHHHHHHHHHHSTTGGGEEEESSHTTSSTHHHHT------T--
T ss_pred ccccccchhhccccc-ccccchhhhhcc--ccchhhhhhhhhhhhhhhhcccceeeecccccccccchhhh------c--
Confidence 11111 222211 111111110111 11111111111 11112245679999999999975321 0
Q ss_pred HHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCC
Q 003226 618 MYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE 666 (837)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~ 666 (837)
....+.+++.+++|++||+|+| |||+|+|+.+
T Consensus 281 ----------------~~~~~~~~a~~~ll~~pG~P~i-y~G~E~g~~~ 312 (316)
T PF00128_consen 281 ----------------NNRDRLKLALAFLLTSPGIPMI-YYGDEIGMTG 312 (316)
T ss_dssp ----------------THHHHHHHHHHHHHHSSSEEEE-ETTGGGTBBT
T ss_pred ----------------ccchHHHHHHHHHHcCCCccEE-EeChhccCCC
Confidence 1122678999999999999977 9999999975
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=1.5e-42 Score=391.52 Aligned_cols=316 Identities=19% Similarity=0.239 Sum_probs=218.3
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 333 ~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.|.|++++ ++||||++||||+|||+|++++.. ++||++.|||.++ ++|||.+|||+||++||++||+||+|+|+||
T Consensus 40 gg~~~~i~-~kldyL~~LGvtaIWL~P~~~s~s--~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 40 GGWYNFLM-GKVDDIAAAGITHVWLPPPSHSVS--EQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CcCHHHHH-HHHHHHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 36899999 699999999999999999998754 6999999999999 6999999999999999999999999999999
Q ss_pred CCCCcccccc---CCCCC----CCccccc----C------CCCCccc----CCCcCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003226 412 ASNNVLDGLN---MFDGT----DGHYFHS----G------SRGYHWM----WDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~---~fdg~----~~~yf~~----~------~~g~~~~----w~~~~ln~~~~eVr~~l~~~l~~Wl~e~g 470 (837)
++.++..... .|.+. ...|+.. . ..+.... .+.++||+.||+|+++|++++++|++++|
T Consensus 117 ~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~G 196 (428)
T PLN00196 117 RTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIG 196 (428)
T ss_pred cccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCC
Confidence 9976632211 12211 1112210 0 0011011 13489999999999999999999988899
Q ss_pred CCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCC-----c-----
Q 003226 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPT-----F----- 540 (837)
Q Consensus 471 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~-----~----- 540 (837)
|||||||+|++|.. .|++++ +++..| .++|||.|.+... .
T Consensus 197 iDG~RlD~ak~~~~--------------------------~f~~~~---v~~~~p-~f~VGE~W~~~~~~~~~~~~~~~~ 246 (428)
T PLN00196 197 FDAWRLDFAKGYSA--------------------------EVAKVY---IDGTEP-SFAVAEIWTSMAYGGDGKPEYDQN 246 (428)
T ss_pred CCEEEeehhhhCCH--------------------------HHHHHH---HHccCC-cEEEEEEeccccccccCCccccch
Confidence 99999999988731 355554 445556 7899999975210 0
Q ss_pred -----eecccc--C-----CcccchhcchhhHHHHHHHHhhcchhhhhhhhHHhh--ccCcccccceecccCcccccccc
Q 003226 541 -----CIPVQD--G-----GVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTM--TNRRWLEKCVAYAESHDQALVGD 606 (837)
Q Consensus 541 -----~~~~~~--g-----glgFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l--~~~~~~~~~v~y~esHD~~r~g~ 606 (837)
+..+.+ + .+.|||.+.... + ..+.+ +.|......... .-..++.++|+|++|||+.|...
T Consensus 247 ~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~-~---~~~~~--~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~ 320 (428)
T PLN00196 247 AHRQELVNWVDRVGGAASPATVFDFTTKGIL-N---VAVEG--ELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQH 320 (428)
T ss_pred hhHHHHHHHHHhcCCccCcceeecccchHHH-H---HHhcC--CchhhhhhcccCcchhhcChhhceeeccCCCCccccc
Confidence 001111 1 124666654321 1 11111 123221111000 01246778999999999998642
Q ss_pred cchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCCCCCcCCCC
Q 003226 607 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 686 (837)
Q Consensus 607 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn 686 (837)
+. .. ...+.+++.+++||+||+||| |||+=
T Consensus 321 --~~----~~------------------~~~~~~lAyA~iLT~pG~P~I-yYg~~------------------------- 350 (428)
T PLN00196 321 --MW----PF------------------PSDKVMQGYAYILTHPGNPCI-FYDHF------------------------- 350 (428)
T ss_pred --cC----CC------------------ccchHHHHHHHHHcCCCcceE-eeCCC-------------------------
Confidence 10 00 012348899999999999999 99831
Q ss_pred CCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCcEEEEeecCCCcEEEEEc-CeEEEEEECC
Q 003226 687 NFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIVFER-GNLVFVFNFH 758 (837)
Q Consensus 687 ~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R-~~llvv~Nf~ 758 (837)
++| .+.+++++|+++|++++++..|...+.. .++.|++++| +.++|.+|..
T Consensus 351 ----------~~~---------~~~~~i~~Li~~Rk~~~~~~~g~~~~~~--a~~d~yv~~~~~~~~~~i~~~ 402 (428)
T PLN00196 351 ----------FDW---------GLKEEIAALVSIRNRNGITPTSELRIME--ADADLYLAEIDGKVIVKIGSR 402 (428)
T ss_pred ----------cCc---------cHHHHHHHHHHHHHhCCCcCCccEEEEE--ecCCEEEEEECCEEEEEECCC
Confidence 223 2445899999999999999988654443 3356999999 6799999865
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=2.8e-40 Score=368.90 Aligned_cols=315 Identities=16% Similarity=0.227 Sum_probs=217.7
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCC
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
-|++|+ ++||||++||||+|||+|++++.. +|||++.|||.++++|||.+||++||++||++||+||+|+|+||++.
T Consensus 27 ~w~~i~-~kl~~l~~lG~t~iwl~P~~~~~~--~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLE-GKVPDLAKSGFTSAWLPPPSQSLA--PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEeCCCCcCCC--CCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 578998 699999999999999999999865 59999999999999999999999999999999999999999999964
Q ss_pred Ccc---ccccCCCCCCCccc-----cc-CCCCCcc----cCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEeccccc
Q 003226 415 NVL---DGLNMFDGTDGHYF-----HS-GSRGYHW----MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (837)
Q Consensus 415 ~~~---~~~~~fdg~~~~yf-----~~-~~~g~~~----~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~ 481 (837)
... ...+.|+|....|. .. ...+... ..+.++||+.||+||++|++++++|++++||||||+|+|++
T Consensus 104 ~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 104 TTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred CCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 321 11223443211111 10 0001111 11348999999999999999998777779999999999998
Q ss_pred ccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCCCCC---c-------------eeccc
Q 003226 482 MMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPT---F-------------CIPVQ 545 (837)
Q Consensus 482 m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~~p~---~-------------~~~~~ 545 (837)
|. ..||+++.+.+ .| .+++||.|.+... . +..+.
T Consensus 184 ~~--------------------------~~f~~~~~~~~---~p-~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~ 233 (401)
T PLN02361 184 YS--------------------------AKFVKEYIEAA---KP-LFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWI 233 (401)
T ss_pred CC--------------------------HHHHHHHHHhh---CC-eEEEEEEecCCCcCCcccccchhhhhHHHHHHHHH
Confidence 82 34888886654 34 8899999976321 0 11111
Q ss_pred c--CC--cccchhcchhhHHHHHHHHhhcchhhhhhhhHHh--hccCcccccceecccCcccccccccchhhhccChhHH
Q 003226 546 D--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHT--MTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 619 (837)
Q Consensus 546 ~--gg--lgFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~--l~~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~ 619 (837)
. ++ ..|||++...+.+.+. + +.|.+.+.... .....|+.++|+|++|||+.|... + |..
T Consensus 234 ~~~~~~~~~fDF~l~~~l~~a~~----~--~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~--~--~~~----- 298 (401)
T PLN02361 234 DGTGGLSAAFDFTTKGILQEAVK----G--QWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQA--H--WPF----- 298 (401)
T ss_pred HhcCCcceeecHHHHHHHHHHHh----h--hHHHHhhhhcCCcchhhcChhhceEecccCcCcchhh--c--cCC-----
Confidence 1 22 2488887776655441 1 12222221110 011246788999999999987532 1 111
Q ss_pred hhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCC
Q 003226 620 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 699 (837)
Q Consensus 620 ~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w 699 (837)
.....+++.+++||+||+||| |||+=+ +|
T Consensus 299 ---------------~~~~~~~AyA~iLT~pG~P~V-yyg~~~-----------------------------------~~ 327 (401)
T PLN02361 299 ---------------PSDHIMEGYAYILTHPGIPTV-FYDHFY-----------------------------------DW 327 (401)
T ss_pred ---------------chHHHHHHHHHHHCCCCcCeE-eecccc-----------------------------------CC
Confidence 123456788999999999999 998611 11
Q ss_pred CCcccccchHHHHHHHHHHHHHHHhccCCCCcEEEEeecCCCcEEEEEcCeEEEEEE
Q 003226 700 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIVFERGNLVFVFN 756 (837)
Q Consensus 700 ~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R~~llvv~N 756 (837)
. ..+.+++++|+.|||++++++.|...+.. .+++-.+|-..++++|=++
T Consensus 328 ~-------~~~~~~I~~Li~lRk~~~~~~~s~~~i~~-a~~~~y~a~i~~~~~~k~g 376 (401)
T PLN02361 328 G-------GSIHDQIVKLIDIRKRQDIHSRSSIRILE-AQSNLYSAIIDEKLCMKIG 376 (401)
T ss_pred C-------hHHHHHHHHHHHHHHhCCCCCCCcEEEEE-ecCCeEEEEECCeEEEEec
Confidence 1 25788999999999999999988654433 3344455555566555543
No 30
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=8e-39 Score=360.79 Aligned_cols=373 Identities=13% Similarity=0.068 Sum_probs=244.2
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 331 ~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+++|+++++++ + ||++ ||++|||||+|+++. ++||+|+||++|+|+|||.+||++|+++ |+||+|+|+|
T Consensus 14 ~glgdl~g~l~-~--yL~~-~v~~i~LlPffps~s--D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~N 82 (470)
T TIGR03852 14 KNLKELNKVLE-N--YFKD-AVGGVHLLPFFPSTG--DRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMIN 82 (470)
T ss_pred CChhhHHHHHH-H--HHHH-hCCEEEECCCCcCCC--CCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhccc
Confidence 67889988884 5 9999 799999999998875 7999999999999999999999999997 8999999999
Q ss_pred CCCCCccccccCCCC----CCCcccccC--------C-----------C------------C-CcccC-----CCcCCCC
Q 003226 411 HASNNVLDGLNMFDG----TDGHYFHSG--------S-----------R------------G-YHWMW-----DSRLFNY 449 (837)
Q Consensus 411 H~s~~~~~~~~~fdg----~~~~yf~~~--------~-----------~------------g-~~~~w-----~~~~ln~ 449 (837)
|+|..|+|+...-.+ .-..||... + + + ..+.| +.++|||
T Consensus 83 HtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~ 162 (470)
T TIGR03852 83 HISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDV 162 (470)
T ss_pred ccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCC
Confidence 999998655432211 111233300 0 0 0 01122 3489999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccC--chHHHHHHHHHHhhhccCCCe
Q 003226 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD--VDAVVYLMLVNDMIHGLYPEA 527 (837)
Q Consensus 450 ~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d--~~a~~fl~~~~~~v~~~~p~~ 527 (837)
.||+|+++|.++++||++ .||||||+||+.++.+. ....+.+ .+.+++|+++++.+ ..|++
T Consensus 163 ~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~--------------~Gt~c~~l~pet~~~l~~~r~~~--~~~~~ 225 (470)
T TIGR03852 163 TSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKK--------------LGTNDFFVEPEIWELLDEVRDIL--APTGA 225 (470)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhccc--------------CCCCcccCChhHHHHHHHHHHHh--ccCCC
Confidence 999999999999999997 89999999999998543 1112222 57889999999988 44699
Q ss_pred EEEEeccCCCCCceeccccCCcccchhcchhhHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCccccccccc
Q 003226 528 VSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDK 607 (837)
Q Consensus 528 ~~iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~ 607 (837)
++|+|.+........--.++.+.|+|.+...+...+...-......|.+. + +..+.+|+.|||...+.+-
T Consensus 226 ~ll~E~~~~~~~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~-----~-----p~~~~nfL~sHDgigl~~~ 295 (470)
T TIGR03852 226 EILPEIHEHYTIQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRK-----S-----PMKQFTTLDTHDGIGVVDV 295 (470)
T ss_pred EEEeHhhhhcccccccccceeEEccCccchhhHHHhhccCHHHHHHHHHh-----C-----cccceEEeecCCCCCCccc
Confidence 99999974332211101234466777765554322111111111222221 1 2234699999999754210
Q ss_pred chhhhccCh----hHHhhhhcC-----------CCCCc-----------hhhhHHHHHHHHHHHHHhCCCCceEeccccc
Q 003226 608 TIAFWLMDK----DMYDFMALD-----------RPSTP-----------RIDRGIALHKMIRLVTMGLGGEAYLNFMGNE 661 (837)
Q Consensus 608 t~~~~~~~~----~~~~~~~~~-----------~~~~~-----------~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E 661 (837)
. -++.. .+...|... ...+. ......++..++++++|++||+|.| |||.|
T Consensus 296 ~---glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~i-Yy~~l 371 (470)
T TIGR03852 296 K---DLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQV-YYVGL 371 (470)
T ss_pred c---ccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceE-Eechh
Confidence 0 01121 112222200 00000 1112235667889999999999988 99999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCC-CcEEEEeecCC
Q 003226 662 FGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS-EHQYVSRKDQG 740 (837)
Q Consensus 662 ~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~-g~~~i~~~~~~ 740 (837)
+|+.+..+.+. -.+.+++-+|..++...........+.+-..+||++|+++|++.- |.+.+ ...+
T Consensus 372 lg~~nD~~~~~------------rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~--~~~~ 437 (470)
T TIGR03852 372 LAGKNDIELLE------------ETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDI--ETPS 437 (470)
T ss_pred hcCCchHHHHH------------hcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEe--cCCC
Confidence 99986332221 122345566776666554322223344445559999999999965 54433 3456
Q ss_pred CcEEEEEc------CeEEEEEECCC
Q 003226 741 DRVIVFER------GNLVFVFNFHW 759 (837)
Q Consensus 741 ~~VlaF~R------~~llvv~Nf~~ 759 (837)
+.|++|.| +.+++++|++.
T Consensus 438 ~~~~~~~r~~~~~~~~~~~~~n~~~ 462 (470)
T TIGR03852 438 ENQIEIVRTNKDGGNKAILTANLKT 462 (470)
T ss_pred CcEEEEEEEcCCCCceEEEEEecCC
Confidence 77999998 35999999993
No 31
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=2.7e-38 Score=358.55 Aligned_cols=375 Identities=15% Similarity=0.151 Sum_probs=244.0
Q ss_pred CCCHHhhHhhhhh-HHHHcCCCEEEECCcccc-CCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 333 INTYANFRDDVLP-RIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 333 ~G~~~~~~~~~Ld-yLk~LGvt~I~L~Pi~e~-~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
.|+++|++ ++|| ||++| |++|||||+++. +. ..+||+|+||++|+|+|||.+||++|++ ||+||+|+|+|
T Consensus 16 ~GdL~gl~-~kLd~yL~~l-v~~vhllPff~psp~-sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~N 87 (495)
T PRK13840 16 DGGLKSLT-ALLDGRLDGL-FGGVHILPFFYPIDG-ADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVN 87 (495)
T ss_pred CCCHhHHH-HHHHHHHHHH-hCeEEECCCccCCCC-CCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCC
Confidence 38999999 6999 59999 999999999954 44 4689999999999999999999999995 99999999999
Q ss_pred CCCCCccccccCC-CCCC---CcccccCC-------------------CC------------CcccC-----CCcCCCCC
Q 003226 411 HASNNVLDGLNMF-DGTD---GHYFHSGS-------------------RG------------YHWMW-----DSRLFNYG 450 (837)
Q Consensus 411 H~s~~~~~~~~~f-dg~~---~~yf~~~~-------------------~g------------~~~~w-----~~~~ln~~ 450 (837)
|+|..|+++.... .+.. ..||.... .+ ..+.| +.++||+.
T Consensus 88 HtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~ 167 (495)
T PRK13840 88 HMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVH 167 (495)
T ss_pred cCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCC
Confidence 9999986543311 1111 11221000 00 01123 24899999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccC-chHHHHHHHHHHhhhccCCCeEE
Q 003226 451 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD-VDAVVYLMLVNDMIHGLYPEAVS 529 (837)
Q Consensus 451 ~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d-~~a~~fl~~~~~~v~~~~p~~~~ 529 (837)
||+|+++|+++++||++ .||||||+||+.++.+.. | ..+.+ .+.++||+++++.++.. +..+
T Consensus 168 NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~-g-------------t~c~~~pe~~~~l~~lr~~~~~~--~~~l 230 (495)
T PRK13840 168 SAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKA-G-------------TSCFMIPETFEFIDRLAKEARAR--GMEV 230 (495)
T ss_pred CHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCC-C-------------CCcCCChHHHHHHHHHHHHhhhc--CCEE
Confidence 99999999999999998 899999999998886531 1 11222 46778999999999765 5678
Q ss_pred EEeccCCCCCceeccccCCcccchhcchhhHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCcccccccccch
Q 003226 530 IGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 609 (837)
Q Consensus 530 iaE~~~~~p~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~t~ 609 (837)
|+|.++.............+-|+|.+...+ +..|....... +.+.+... +.++.+|+.|||...+-|-..
T Consensus 231 l~Ei~~y~~~~~~~~~e~~~vYnF~Lp~ll----~~aL~~~~~~~----L~~~l~~~--p~~~~n~L~~HDgIgl~d~~~ 300 (495)
T PRK13840 231 LVEIHSYYKTQIEIAKKVDRVYDFALPPLI----LHTLFTGDVEA----LAHWLEIR--PRNAVTVLDTHDGIGIIDVGA 300 (495)
T ss_pred EEeCccccCccccccccccEEecchhhHHH----HHHHHhCCchH----HHHHHHhC--CCccEEeeecCCCCCcccccc
Confidence 999875432211111123345666554433 33333221111 11111111 456789999999977621100
Q ss_pred ----hhhccChhH----Hhhh---hcC--------CCCC--------c---hhhhHHHHHHHHHHHHHhCCCCceEeccc
Q 003226 610 ----AFWLMDKDM----YDFM---ALD--------RPST--------P---RIDRGIALHKMIRLVTMGLGGEAYLNFMG 659 (837)
Q Consensus 610 ----~~~~~~~~~----~~~~---~~~--------~~~~--------~---~~~~~~a~~k~a~~l~ltlpG~p~L~y~G 659 (837)
..-++..+. ...+ ++. ..+. . .....-++..++++++|++||+|.| |||
T Consensus 301 ~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~i-Y~~ 379 (495)
T PRK13840 301 DDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQV-YYV 379 (495)
T ss_pred cccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCccee-eec
Confidence 001122211 1111 110 0000 0 0011123567889999999999977 999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCcEEEEeecC
Q 003226 660 NEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQ 739 (837)
Q Consensus 660 ~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~ 739 (837)
.|+|..+ |.... .-.+.+++-+|..|+|...+..-...+++-.++|+++|+++|++.+.+... ..
T Consensus 380 ~ll~~~N--D~~~~----------~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~~~~~~~---~~ 444 (495)
T PRK13840 380 GLLAGPN--DMELL----------ARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFDGAFSYA---AD 444 (495)
T ss_pred hhhccCc--cHHHH----------HhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEEe---cC
Confidence 9999975 22110 124557888999999997665455679999999999999999996554332 33
Q ss_pred CCcEEEEEc----CeEEEEEECC
Q 003226 740 GDRVIVFER----GNLVFVFNFH 758 (837)
Q Consensus 740 ~~~VlaF~R----~~llvv~Nf~ 758 (837)
++..++..| ......+||.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (495)
T PRK13840 445 GDTSLTLSWTAGDSSASLTLDFA 467 (495)
T ss_pred CCCeEEEEEecCCceEEEEEEcc
Confidence 444566665 2466677777
No 32
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=5e-37 Score=348.43 Aligned_cols=468 Identities=12% Similarity=0.107 Sum_probs=292.4
Q ss_pred CceEEEEecCCCCCCCCCCCHHhhHh-hhhhHHHHcCCCEEEECCcccc---------CCCCCCCCcccccccCCCCCCC
Q 003226 316 SLRIYEAHVGMSSTEPIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEH---------SYYASFGYHVTNFFAPSSRCGT 385 (837)
Q Consensus 316 ~~~IYE~hv~~f~~~~~~G~~~~~~~-~~LdyLk~LGvt~I~L~Pi~e~---------~~~~s~GY~~~~y~avd~~~Gt 385 (837)
..+=+.+++.+....++..-+..+.+ ...+||++|||++|||+|++++ |.. ..|||++| |.|+|+|||
T Consensus 51 a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~-D~gyDi~d-~~Idp~~GT 128 (688)
T TIGR02455 51 ASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSI-DGNFDRIS-FDIDPLLGS 128 (688)
T ss_pred cCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCC-CCCCCccc-CccCcccCC
Confidence 44567777877765554433444433 5789999999999999999999 653 57999999 599999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCC-CCCCCccc---------------------------------
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGHYF--------------------------------- 431 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f-dg~~~~yf--------------------------------- 431 (837)
.+||++||++||++||+||+|+|+||||..|.-.+..- ++..+.||
T Consensus 129 ~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L 208 (688)
T TIGR02455 129 EEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDEL 208 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHH
Confidence 99999999999999999999999999999884111110 12122233
Q ss_pred ----------------ccCCCCCcccCC----------------------CcCCCCCCHH--HHHHHH-HHHHHHHHHcC
Q 003226 432 ----------------HSGSRGYHWMWD----------------------SRLFNYGSWE--VLRFLL-SNARWWLEEYK 470 (837)
Q Consensus 432 ----------------~~~~~g~~~~w~----------------------~~~ln~~~~e--Vr~~l~-~~l~~Wl~e~g 470 (837)
..+.....|.|+ .|+|||.||. ||+.|+ +++++|++ .|
T Consensus 209 ~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG 287 (688)
T TIGR02455 209 KAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LG 287 (688)
T ss_pred hhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hc
Confidence 111122345554 2799999999 999999 89999999 89
Q ss_pred CCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhh--ccCCCeEEEEeccCCCCCceeccccCC
Q 003226 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIH--GLYPEAVSIGEDVSGMPTFCIPVQDGG 548 (837)
Q Consensus 471 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~--~~~p~~~~iaE~~~~~p~~~~~~~~gg 548 (837)
+||||+|++.+|.... +- . .....++..+++.+|+.|. ..+++.++++|..- .|...+.+..++
T Consensus 288 ~~GfRLDAvpfLg~e~-~~----~--------~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl-~~~d~~~~~g~~ 353 (688)
T TIGR02455 288 ARGLRLDANGFLGVER-RA----E--------GTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNL-TIDDIAAMSHGG 353 (688)
T ss_pred cccceeccccceeeec-CC----C--------CCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccC-CHHHHHHHhCCC
Confidence 9999999999885431 10 0 0011345678999999998 78899999999974 455555555543
Q ss_pred cccchhcchhhHHHHHHHHhhcchhhhhhhhHHhhccCc-ccccceecccCcccccccccchhhh---------------
Q 003226 549 VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRR-WLEKCVAYAESHDQALVGDKTIAFW--------------- 612 (837)
Q Consensus 549 lgFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~-~~~~~v~y~esHD~~r~g~~t~~~~--------------- 612 (837)
.|..+++..+-.....|...+......-+..... .. -..+.+.++.|||+..+. -+.+|
T Consensus 354 --~dl~~dF~t~p~~~~AL~tgda~pLr~~L~~~~~-~gid~~~~~~~LrNHDELtle--lvh~~~~~~~~~~~~~g~~~ 428 (688)
T TIGR02455 354 --ADLSYDFITRPAYHHALLTGDTEFLRLMLKEMHA-FGIDPASLIHALQNHDELTLE--LVHFWTLHAHDHYHYKGQTL 428 (688)
T ss_pred --cceeecccccHHHHHHHHcCCHHHHHHHHHhhhc-CCCCchhhhhhccCccccchh--hhhhcccccccccccccccC
Confidence 3333333333222222222211111111111111 11 123446899999996542 01011
Q ss_pred -------ccChhHHhhhhcCCC---------------------------CCchhhhHHHHHHHHHHHHHh----CCCCce
Q 003226 613 -------LMDKDMYDFMALDRP---------------------------STPRIDRGIALHKMIRLVTMG----LGGEAY 654 (837)
Q Consensus 613 -------~~~~~~~~~~~~~~~---------------------------~~~~~~~~~a~~k~a~~l~lt----lpG~p~ 654 (837)
-+-..||..++++.. -.+..+...+..+++.+++++ +||+|+
T Consensus 429 ~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~ 508 (688)
T TIGR02455 429 PGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFA 508 (688)
T ss_pred CccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceE
Confidence 123466766666531 112333455666888889999 999998
Q ss_pred Eeccc--------------cccCCCCCCCCCCCCCCC----CCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHH
Q 003226 655 LNFMG--------------NEFGHPEWIDFPRGDQRL----PNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRA 716 (837)
Q Consensus 655 L~y~G--------------~E~G~~~~~d~p~~~~~~----~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~ 716 (837)
| ||| +|+||.+..-.++.-..+ |... ......-..+..+.=...+.....+++++.++
T Consensus 509 L-~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~---~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~ 584 (688)
T TIGR02455 509 L-SGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAE---ASAEGLPKARALYGSLAEQLDEPDSFACKLKK 584 (688)
T ss_pred e-ecccccccccccccchhhhhccCccccccCCCcccCCCCchhh---hccCCCCCCcCCCCCHHHHhhCCccHHHHHHH
Confidence 8 999 999996432223211100 0000 00000000111111111233456699999999
Q ss_pred HHHHHHHhccCCCCcEEEEeecCCCcEEEEEc------CeEEEEEECCCCCcccceEEecc--CCceEEEEEeCCCCccC
Q 003226 717 MQHLEEKYGFMTSEHQYVSRKDQGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCL--KPGKYKIVLDSDYPLFG 788 (837)
Q Consensus 717 Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R------~~llvv~Nf~~~~~~~~~~i~v~--~~g~~~~vl~sd~~~~g 788 (837)
|++.|+++++...+.. ......+..|+|+.| +.+|+|.||+.. ....+|.++ .++...++++.... +
T Consensus 585 il~vR~~~~i~~~~~~-~~~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~--~~~~~l~l~~~~~~~~~dl~~~~~~--~ 659 (688)
T TIGR02455 585 ILAVRQAYDIAASKQI-LIPDVQAPGLLVMVHELPAGKGIQITALNFGAD--AIAEEICLPGFAPGPVVDIIHESVE--G 659 (688)
T ss_pred HHHHHHhCCcccCcee-eecCCCCCcEEEEEEEcCCCCceEEEeeccCCC--CeeeEEeccccCCCCceeccCCCcc--C
Confidence 9999999998877743 333455677999988 249999999942 233444433 24555555543221 0
Q ss_pred CccccCCCcccccccCccCCCCeEEEEEECCceEEEEEEecCC
Q 003226 789 GYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYALADEE 831 (837)
Q Consensus 789 g~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~~~~~~ 831 (837)
. ....+.+.|+|+|++..+|..+...
T Consensus 660 ---~--------------~~~~~~~~i~L~~y~~~wl~~~~~~ 685 (688)
T TIGR02455 660 ---D--------------LTDDCELMINLDPYEALALRIVNAA 685 (688)
T ss_pred ---C--------------cCCCceeEEEecCcceEEEEecccc
Confidence 0 0123458899999999999887654
No 33
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-38 Score=366.26 Aligned_cols=399 Identities=22% Similarity=0.286 Sum_probs=247.7
Q ss_pred ceEEEEecCCCCCC--------CCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHH
Q 003226 317 LRIYEAHVGMSSTE--------PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD 388 (837)
Q Consensus 317 ~~IYE~hv~~f~~~--------~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~ed 388 (837)
.+||++.+++|... .+.|||+|++ ++||||++|||++|||+||++++. .++||++.||+.+++.|||++|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~-~~LdYl~~LGv~aiwl~Pi~~s~~-~~~gY~~~Dy~~id~~~Gt~~d 78 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGIT-EKLDYLKELGVDAIWLSPIFESPQ-ADHGYDVSDYTKVDPHFGTEED 78 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHH-HhhhHHHHhCCCEEEeCCCCCCCc-cCCCccccchhhcCcccCCHHH
Confidence 47999999998644 3569999999 799999999999999999999863 5799999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEeeccCCCCCCccccccCC-CCCC---Ccccc---------------cCCCCCccc---C----
Q 003226 389 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTD---GHYFH---------------SGSRGYHWM---W---- 442 (837)
Q Consensus 389 fk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f-dg~~---~~yf~---------------~~~~g~~~~---w---- 442 (837)
|++||++||++||+||||+|+||++..+.+..... .+.. ..||. ....+..|. +
T Consensus 79 ~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (505)
T COG0366 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceE
Confidence 99999999999999999999999999984332211 1110 12222 011122222 1
Q ss_pred ------CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCc-hHHHHHHH
Q 003226 443 ------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLML 515 (837)
Q Consensus 443 ------~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~a~~fl~~ 515 (837)
..++||+.|++||+.+++.++||++ +||||||+|++++|.... +.+ .... ...+. .-.++++.
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~-~~~-----~~~~---~~~~~~~~~~~~~~ 228 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDF-GLP-----PSEE---NLTFLEEIHEYLRE 228 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhcccc-CCC-----Cccc---ccccHHHHHHHHHH
Confidence 1267999999999999999999999 999999999999985421 100 0000 00111 11234444
Q ss_pred HHHhhhccCCCeEEEEeccCCCCCceecccc-C--C--cccchhcchhhHH-----HHHHHHhhcchhhhhhhhHHhh-c
Q 003226 516 VNDMIHGLYPEAVSIGEDVSGMPTFCIPVQD-G--G--VGFDYRLQMAIAD-----KWIELLKKRDEDWKMGAIVHTM-T 584 (837)
Q Consensus 516 ~~~~v~~~~p~~~~iaE~~~~~p~~~~~~~~-g--g--lgFd~~~~~~~~d-----~~~~~l~~~~~~~~~~~l~~~l-~ 584 (837)
.+..+.......+..++........+..... . . +.|++... .... .....++.....|. ... .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 302 (505)
T COG0366 229 ENPDVLIYGEAITDVGEAPGAVKEDFADNTSFTNPELSMLFDFSHV-GLDFEALAPLDAEELKEILADWP-----LAVNL 302 (505)
T ss_pred HHHHHHhcCcceeeeeccccccchhhhhccchhhhhHhhccccccc-cccccccCcccHHHHHHHHHHHH-----hhhcc
Confidence 4444433323444555544333322222100 0 0 11111100 0000 00001111101110 001 1
Q ss_pred cCcccccceecccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCC
Q 003226 585 NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH 664 (837)
Q Consensus 585 ~~~~~~~~v~y~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~ 664 (837)
...|. ..|..|||+.|+-+... .+. .+..+..+++++++++++|+|+| |||+|+|+
T Consensus 303 ~~~~~---~~~~~~hD~~r~~~~~~----~~~----------------~~~~~~~~~~~~~~~~~~g~p~i-y~G~e~g~ 358 (505)
T COG0366 303 NDGWN---NLFLSNHDQPRLLSRFG----DDV----------------GGRDASAKLLAALLFLLPGTPFI-YYGDELGL 358 (505)
T ss_pred ccCch---hhhhhhcCccceeeecc----CCc----------------cchHHHHHHHHHHHHhCCCCcEE-ecccccCC
Confidence 12232 24789999998754310 000 01235667888999999999998 99999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCC---------------------------ccccc--chHHHHHHH
Q 003226 665 PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGD---------------------------ADYLR--YRGMQEFDR 715 (837)
Q Consensus 665 ~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~---------------------------~~~~~--~~~l~~f~~ 715 (837)
....+.+........ .......+++.||.+|.|.. ..... ..+++.+++
T Consensus 359 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~ 436 (505)
T COG0366 359 TNFKDPPIKYYDDVE--LDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYR 436 (505)
T ss_pred CCCCCcchhhhchhh--hhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHH
Confidence 764332110000000 01133456667888888871 11111 448999999
Q ss_pred HHHHHHHHh-ccCCCCcEEEEeecCCCcEEEEEcC----eEEEEEECCC
Q 003226 716 AMQHLEEKY-GFMTSEHQYVSRKDQGDRVIVFERG----NLVFVFNFHW 759 (837)
Q Consensus 716 ~Li~LRk~~-~~L~~g~~~i~~~~~~~~VlaF~R~----~llvv~Nf~~ 759 (837)
+|+++|+.+ ..+..|...+........+++|.|. .++|++|++.
T Consensus 437 ~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 485 (505)
T COG0366 437 RLIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSE 485 (505)
T ss_pred HHHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCC
Confidence 999999988 5666664555555555679999993 3899999984
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=4.1e-36 Score=351.13 Aligned_cols=328 Identities=19% Similarity=0.249 Sum_probs=213.3
Q ss_pred CceEEEEecCCCCC-CCCCCC-HHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHH
Q 003226 316 SLRIYEAHVGMSST-EPIINT-YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLI 393 (837)
Q Consensus 316 ~~~IYE~hv~~f~~-~~~~G~-~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV 393 (837)
....||+.+..|-- .++-|. |++|+ ++||||++||||+|||+|++++.. ++||+|.|||.++++|||.+|||+||
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~w~~~I~-ekldyL~~LG~taIWLpP~~~s~s--~~GY~p~D~y~lds~yGT~~ELk~LI 574 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGRWYMELG-EKAAELSSLGFTVVWLPPPTESVS--PEGYMPKDLYNLNSRYGTIDELKDLV 574 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCchHHHHH-HHHHHHHHhCCCEEEeCCCCCCCC--CCCcCcccccccCcCcCCHHHHHHHH
Confidence 34567777666642 122233 68998 699999999999999999998774 69999999999999999999999999
Q ss_pred HHHHHcCCEEEEeeccCCCCCCcccc---ccCCCCCC----------CcccccCCCCCcc----cCCCcCCCCCCHHHHH
Q 003226 394 DKAHELGLLVLMDIVHSHASNNVLDG---LNMFDGTD----------GHYFHSGSRGYHW----MWDSRLFNYGSWEVLR 456 (837)
Q Consensus 394 ~~aH~~GI~VIlDvV~NH~s~~~~~~---~~~fdg~~----------~~yf~~~~~g~~~----~w~~~~ln~~~~eVr~ 456 (837)
++||++||+||+|+|+||++..+... .+.|.+.. ...|.. ++..+ ....++||+.||+||+
T Consensus 575 ~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~G--rG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 575 KSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQG--RGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred HHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCC--cCCcCcccccCcCCcCCCCCHHHHH
Confidence 99999999999999999998643111 11222210 001110 11111 1234899999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccCC
Q 003226 457 FLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSG 536 (837)
Q Consensus 457 ~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~~ 536 (837)
+|.++++||++++||||||||+|+++.. .|++++. +...| .+++||.|.+
T Consensus 653 eL~~WlkWL~~e~G~DGfRLDaVKgf~~--------------------------~Fvkeyv---~a~kp-~F~VGEyWd~ 702 (894)
T PLN02784 653 DLKEWLCWMRKEVGYDGWRLDFVRGFWG--------------------------GYVKDYM---EASEP-YFAVGEYWDS 702 (894)
T ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCH--------------------------HHHHHHH---hccCC-cEEEEEeccc
Confidence 9999999999899999999999986521 2444443 33444 7999999987
Q ss_pred CCC--------------ceecccc--CC--cccchhcchhhHHHHHHHHhhcchhhhhhhhHH---hhccCcccccceec
Q 003226 537 MPT--------------FCIPVQD--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVH---TMTNRRWLEKCVAY 595 (837)
Q Consensus 537 ~p~--------------~~~~~~~--gg--lgFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~---~l~~~~~~~~~v~y 595 (837)
... .+..+.+ ++ ..|||++...+.+.+. ..+.|.+..... .+ -..|+.++|+|
T Consensus 703 ~~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~-----~~e~wrL~d~~g~~~gl-v~~~P~~AVTF 776 (894)
T PLN02784 703 LSYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALE-----RCEYWRLSDQKGKPPGV-VGWWPSRAVTF 776 (894)
T ss_pred cccccCccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHh-----ccchhhhhhccCCCCCe-eccccCceEEE
Confidence 321 0111111 11 2377776655533221 123343332211 11 13578899999
Q ss_pred ccCcccccccccchhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCCCCceEeccccccCCCCCCCCCCCCC
Q 003226 596 AESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQ 675 (837)
Q Consensus 596 ~esHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~L~y~G~E~G~~~~~d~p~~~~ 675 (837)
++|||+.+... .|.... ....++++++||+||+||+ |||+=+|.
T Consensus 777 VDNHDTg~~Q~----~w~~p~--------------------~k~~~AYAyILthpG~PcV-Fy~h~y~~----------- 820 (894)
T PLN02784 777 IENHDTGSTQG----HWRFPE--------------------GKEMQGYAYILTHPGTPAV-FYDHIFSH----------- 820 (894)
T ss_pred ecCCCCCCCcc----cCCCCc--------------------cchhhHHHHHHcCCCcceE-Eehhhhhh-----------
Confidence 99999976321 111111 1123478899999999999 98775431
Q ss_pred CCCCCCcCCCCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCcEEEEeecCCCcEEEEEcCeEEEEE
Q 003226 676 RLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIVFERGNLVFVF 755 (837)
Q Consensus 676 ~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R~~llvv~ 755 (837)
+.+-+++|+.+|+...+-....-.+. ..+.+--.|-..+.++|-+
T Consensus 821 ----------------------------------~~~~I~~Li~iRk~~gI~~~S~v~i~-~a~~~~Y~a~i~~k~~~ki 865 (894)
T PLN02784 821 ----------------------------------YHPEIASLISLRNRQKIHCRSEVKIT-KAERDVYAAIIDEKVAMKI 865 (894)
T ss_pred ----------------------------------hHHHHHHHHHHHHHcCCCCCCceeEE-EecCCcEEEEeCCeeEEEE
Confidence 11238999999999987655532232 2233323344446666655
No 35
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-34 Score=334.39 Aligned_cols=167 Identities=28% Similarity=0.379 Sum_probs=136.4
Q ss_pred CCCceEEEEecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHH
Q 003226 314 PKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKS 391 (837)
Q Consensus 314 ~~~~~IYE~hv~~f~~~--~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~ 391 (837)
.+..+|||+.+++|..+ ++.|+++|++ ++|+||++||+|+|||+||++++.. .+||++.||+.++|+|||.|||++
T Consensus 15 W~~~~~YQI~~~sF~~s~~d~~G~~~GI~-~kldyi~~lG~taiWisP~~~s~~~-~~GY~~~d~~~l~p~fGt~edf~~ 92 (545)
T KOG0471|consen 15 WKTESIYQIYPDSFADSDGDGVGDLKGIT-SKLDYIKELGFTAIWLSPFTKSSKP-DFGYDASDLEQLRPRFGTEEDFKE 92 (545)
T ss_pred hhcCceeEEeccccccccCCCccccccch-hhhhHHHhcCCceEEeCCCcCCCHH-HhccCccchhhhcccccHHHHHHH
Confidence 36778999999999654 5679999999 7999999999999999999998873 799999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeeccCCCCCCccccccCC-------------CCCC--------CcccccCCCCCcccC--------
Q 003226 392 LIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-------------DGTD--------GHYFHSGSRGYHWMW-------- 442 (837)
Q Consensus 392 LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f-------------dg~~--------~~yf~~~~~g~~~~w-------- 442 (837)
||+++|++||++|+|+|+||++..+.++.... ++.. +..+.....+..|.|
T Consensus 93 Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~ 172 (545)
T KOG0471|consen 93 LILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYY 172 (545)
T ss_pred HHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCccccccccee
Confidence 99999999999999999999997765443322 1110 111111112222222
Q ss_pred ------CCcCCCCCCHHHHHHHHHHHH-HHHHHcCCCeEEeccccccc
Q 003226 443 ------DSRLFNYGSWEVLRFLLSNAR-WWLEEYKFDGFRFDGVTSMM 483 (837)
Q Consensus 443 ------~~~~ln~~~~eVr~~l~~~l~-~Wl~e~gvDGfR~D~v~~m~ 483 (837)
..+++|++||+|++.|.++++ +|++ +||||||+|+++++.
T Consensus 173 l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~ 219 (545)
T KOG0471|consen 173 LGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA 219 (545)
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc
Confidence 238999999999999999999 8888 999999999999874
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=3.8e-31 Score=312.99 Aligned_cols=174 Identities=22% Similarity=0.304 Sum_probs=132.7
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCC
Q 003226 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 334 G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
+||.+++ ++||||++||||+|||+||+++....+|||+++||+.|++.|||.++|++||++||++||+||||+|+||++
T Consensus 13 ~tf~~~~-~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 13 FTFDDAA-ALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCHHHHH-HhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7999999 799999999999999999999866567999999999999999999999999999999999999999999999
Q ss_pred CC---cccccc------------CC----C-------------CCC-----------------C----cccccCC----C
Q 003226 414 NN---VLDGLN------------MF----D-------------GTD-----------------G----HYFHSGS----R 436 (837)
Q Consensus 414 ~~---~~~~~~------------~f----d-------------g~~-----------------~----~yf~~~~----~ 436 (837)
.+ +.++.. .| + |.. . .||+... .
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 76 211110 11 0 000 0 0222110 0
Q ss_pred CC-----------------------c---ccC----------------CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeE
Q 003226 437 GY-----------------------H---WMW----------------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 474 (837)
Q Consensus 437 g~-----------------------~---~~w----------------~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGf 474 (837)
.+ + ..| +.+.++.++|+|.+...+.+..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 00 0 012 12567889999999999999999998779999
Q ss_pred EecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEe-ccC
Q 003226 475 RFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE-DVS 535 (837)
Q Consensus 475 R~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE-~~~ 535 (837)
|+|.+.++. ++-.||+.+++.+ .|+.+++.| .+.
T Consensus 252 RIDh~dGL~------------------------dP~~Yl~rLr~~~---~~~~yivvEKIl~ 286 (825)
T TIGR02401 252 RIDHIDGLA------------------------DPEGYLRRLRELV---GPARYLVVEKILA 286 (825)
T ss_pred EeccccccC------------------------ChHHHHHHHHHhc---CCCceEEEEEecc
Confidence 999997662 2446899998664 345778888 443
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.94 E-value=1.4e-25 Score=266.89 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=77.8
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCC
Q 003226 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 334 G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
++|.+++ ++||||++||||+|||+||+++....+|||+++||+.|++.|||.++|++||++||++||+||||+|+||++
T Consensus 17 ~tf~~~~-~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 17 FTFDDAA-ELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCHHHHH-HHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 6899999 799999999999999999999865568999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 003226 414 NNV 416 (837)
Q Consensus 414 ~~~ 416 (837)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 754
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=8.5e-23 Score=213.35 Aligned_cols=377 Identities=16% Similarity=0.207 Sum_probs=227.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCC-----CCCC-CCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-----YASF-GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~-----~~s~-GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
++..|+.|+-..|.--|+..||+.|+.|+.. +.=| .|+|.. |.++.|-|..+||+.||..|.+-|+|+++|+|
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv 116 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAV 116 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHHHHHHHhhccceEEEehhh
Confidence 5677877788899999999999999999742 2223 599999 68899999999999999999999999999999
Q ss_pred cCCCCCCcccc-------c------cCCCCCCCc--ccccCC----CCCcccC------------CCcCCCCCCHHHHHH
Q 003226 409 HSHASNNVLDG-------L------NMFDGTDGH--YFHSGS----RGYHWMW------------DSRLFNYGSWEVLRF 457 (837)
Q Consensus 409 ~NH~s~~~~~~-------~------~~fdg~~~~--yf~~~~----~g~~~~w------------~~~~ln~~~~eVr~~ 457 (837)
+|||+....++ . ..|.|.+.. =|+... ......| +..+||.++.-||..
T Consensus 117 ~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~K 196 (504)
T KOG2212|consen 117 INHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSK 196 (504)
T ss_pred hhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHH
Confidence 99998642111 1 123332110 122210 0111112 336899999999999
Q ss_pred HHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHH-HHHHHHHHhhhccCCCeEEEEeccCC
Q 003226 458 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGEDVSG 536 (837)
Q Consensus 458 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~-~fl~~~~~~v~~~~p~~~~iaE~~~~ 536 (837)
|++.|.+.++ .||.|||.|+++||.-. |+..+ .-++.+|.-.-......+++-|.-.-
T Consensus 197 ive~L~hLid-lGVAGFRvDAsKHMwp~--------------------Di~~I~~~l~nLnsD~f~s~srpfi~qEVID~ 255 (504)
T KOG2212|consen 197 IAEYLNHLID-IGVAGFRVDASKHMWPG--------------------DIKAILDKLHNLNSDWFPSGSKPFIYQEVIDL 255 (504)
T ss_pred HHHHHHHHHH-hccceeeechhhccChH--------------------HHHHHHHHHhhcccccccCCCCceehhhhhhc
Confidence 9999999999 99999999999999322 21111 11222222222222345666665532
Q ss_pred CCC--ceeccccCCcccchhcchhhHHHH-----HHHHhhcchhhhhhhhHHhhccCcccccceecccCccccccccc--
Q 003226 537 MPT--FCIPVQDGGVGFDYRLQMAIADKW-----IELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDK-- 607 (837)
Q Consensus 537 ~p~--~~~~~~~gglgFd~~~~~~~~d~~-----~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~g~~-- 607 (837)
--+ -+..+...|---.|++...+...+ +++|++..++|... ..++.++|++|||+.|-...
T Consensus 256 GgE~v~~~dY~g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf~----------~s~~~L~FvDNHDNQR~~gagg 325 (504)
T KOG2212|consen 256 GGEPIKSSDYFGNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGFM----------PSDRALVFVDNHDNQRGHGAGG 325 (504)
T ss_pred CCceeecccccCCceeeeeechHHHHHHHhcchhHHHHHhcCCccCcC----------CCcceEEEeccCcccccCCCCc
Confidence 111 222222222223444433333222 35555544444321 23467899999999985332
Q ss_pred -chhhhccChhHHhhhhcCCCCCchhhhHHHHHHHHHHHHHhCC-CCceEeccccccCCCCCCCCCCCCCCCCCCCc-CC
Q 003226 608 -TIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQF-VP 684 (837)
Q Consensus 608 -t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlp-G~p~L~y~G~E~G~~~~~d~p~~~~~~~~~~~-~~ 684 (837)
.+.+ -...++.|||.++|+++| |+|-+ ..---|-..+|...+. +... +.
T Consensus 326 a~Vlt---------------------YK~~~~YkmA~~FmLA~PyG~~RV-MSSFaF~~~D~~PP~~------~~~~i~S 377 (504)
T KOG2212|consen 326 ASVLT---------------------YKDARLYKMAVGFMLAHPYGFTRV-MSSFAFDVNDWVPPPN------NNGVIKS 377 (504)
T ss_pred ceEEE---------------------ecchhhhhhhhhhheecccCcchh-heeeeeecCCCCCCCC------CCcceec
Confidence 1211 123467899999999999 88765 3333333333322111 1111 11
Q ss_pred CCCCCCcccCcccCCCCcccccchHHHHHHHHHHHHHHHhccCCCCcEEEEeecCCCcEEEEEc-CeEEEEEECCCCCcc
Q 003226 685 GNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIVFER-GNLVFVFNFHWNSSY 763 (837)
Q Consensus 685 gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~~~Li~LRk~~~~L~~g~~~i~~~~~~~~VlaF~R-~~llvv~Nf~~~~~~ 763 (837)
...++-..|.. -|.... -..-++.|.++|..- .+.+...+-+.+.+-|+|.| .+=++++|...-.-.
T Consensus 378 P~Fn~D~tC~~--GWvCEH------RWrqI~~Mv~FrnAV----~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s 445 (504)
T KOG2212|consen 378 PTFNPDTTCGN--GWVCEH------RWRQIRNMVNFRNAV----DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFS 445 (504)
T ss_pred ceeCCCCcccC--ceeeec------hHHHHHHHHhhhhhc----CCccccceeeCCCcEEEEecCCccEEEEeCcchhHH
Confidence 22223333333 344332 234478888888654 23333344466678999999 467788887632223
Q ss_pred cceEEeccCCceEEEEEeCCC
Q 003226 764 SDYRVGCLKPGKYKIVLDSDY 784 (837)
Q Consensus 764 ~~~~i~v~~~g~~~~vl~sd~ 784 (837)
..+..++| +|+|+++++.+.
T Consensus 446 ~~l~T~LP-AGtYCDviSG~~ 465 (504)
T KOG2212|consen 446 LTLQTGLP-AGTYCDVISGDK 465 (504)
T ss_pred HHHhcCCC-CCceeeeecccc
Confidence 34555666 699999998543
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.87 E-value=3e-22 Score=199.43 Aligned_cols=93 Identities=25% Similarity=0.368 Sum_probs=84.3
Q ss_pred EEecCCCCC--CCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCC--CCCCCcccccccCCCCCCCHHHHHHHHHHH
Q 003226 321 EAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY--ASFGYHVTNFFAPSSRCGTPDDLKSLIDKA 396 (837)
Q Consensus 321 E~hv~~f~~--~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~--~s~GY~~~~y~avd~~~Gt~edfk~LV~~a 396 (837)
|+.+++|.. .++.|+|++++ ++|+||++||||+|||+||++++.. .+|||+++||++++++|||++||++||++|
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~-~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~ 79 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGII-EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAA 79 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHH-HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHH
Confidence 355677753 35679999999 6999999999999999999999853 679999999999999999999999999999
Q ss_pred HHcCCEEEEeeccCCCCC
Q 003226 397 HELGLLVLMDIVHSHASN 414 (837)
Q Consensus 397 H~~GI~VIlDvV~NH~s~ 414 (837)
|++||+||||+|+||++.
T Consensus 80 h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 80 HARGIKVILDVVINHTSD 97 (166)
T ss_pred HHCCCEEEEEECCCCCCC
Confidence 999999999999999986
No 40
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.82 E-value=3.4e-20 Score=168.45 Aligned_cols=96 Identities=56% Similarity=1.106 Sum_probs=87.2
Q ss_pred eCCcEEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc-cccCCccc
Q 003226 201 SDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWI 279 (837)
Q Consensus 201 ~~~gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~~-~~~~~~~~ 279 (837)
..+|++||+|||+|++|+|+||||+|+...++|+|.++|+|+++||+..+|...++||+.|||+|...+|. .+++|||+
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA 82 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWI 82 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcce
Confidence 45689999999999999999999999988899999999999999999988888899999999999986554 58999999
Q ss_pred eeeccCCCCCCCCcEEe
Q 003226 280 KFSVQAPGEIPYNGIYY 296 (837)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ 296 (837)
+++++.|++..|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (99)
T cd02854 83 KYVTQDKETALYDGVFW 99 (99)
T ss_pred eEEEeCCCCcceeeEEC
Confidence 99999998877877765
No 41
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.81 E-value=2.4e-18 Score=192.83 Aligned_cols=307 Identities=25% Similarity=0.353 Sum_probs=199.7
Q ss_pred ccCCcEEeCCc-EEEEEeCCCcC-------EEEEEe-------ecCCCCC------CccccccCCCceEEEEeCCCCCCC
Q 003226 194 EKFGFIRSDTG-ITYREWAPGAK-------SASLIG-------DFNNWNP------NADIMTQNEFGVWEIFLPNNADGS 252 (837)
Q Consensus 194 ~~lG~~~~~~g-v~fr~WAP~A~-------~V~L~g-------Dfn~w~~------~~~~m~r~~~GvWei~ip~~~~g~ 252 (837)
..||+|+..+| +.|-.|.|.-. .|+|.. ||..-+. ...++.|.+.-+|-+ +.+...|.
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgV-v~GlraGt 104 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGV-VAGLRAGT 104 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeeh-hhccCCCC
Confidence 47999999898 89999999655 788863 3332221 124666766667744 55555554
Q ss_pred CCCCCCCEEEEEEeCCCCcc----ccCCccceeeccCCCCCCCCcEEeCCCc------cccccccC-------CCCCCCC
Q 003226 253 PPIPHGSRVKIHMDTPSGIK----DSIPAWIKFSVQAPGEIPYNGIYYDPPE------EEKYVFQH-------PQPKKPK 315 (837)
Q Consensus 253 ~~~~~g~~yk~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~-------~~~~~~~ 315 (837)
- ..-|+.|..+.....+.. +.+..-..|.+..|.+ +||.+. +..|--+. .-+..+.
T Consensus 105 r-~q~GsfYwLry~d~~~~~~~I~DpLaySlPyGvfaPAE------lYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~ 177 (811)
T PF14872_consen 105 R-DQAGSFYWLRYRDQDGEVQIIRDPLAYSLPYGVFAPAE------LYDLERLQRRRADLDYFEATGAADPSDGIPRVPA 177 (811)
T ss_pred c-ccccceEEEEEccCCCCeEEecccccccCcccccChHH------hhchHhHhhhhhhHHHHHhhccccCCCCCcccCC
Confidence 3 355889988776655543 1111112233333332 456542 11121111 1133457
Q ss_pred CceEEEEecCCCCCCCCCCCHHhhHhhhhhHHHH---------------cCCCEEEECCcccc-----------------
Q 003226 316 SLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKR---------------LGYNAVQIMAVQEH----------------- 363 (837)
Q Consensus 316 ~~~IYE~hv~~f~~~~~~G~~~~~~~~~LdyLk~---------------LGvt~I~L~Pi~e~----------------- 363 (837)
+..|-|+||+..|++ |++.|++ +....|.+ .||++||||||-..
T Consensus 178 P~nILQiHv~TAsp~---GtlaGLT-~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~ 253 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---GTLAGLT-RIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIR 253 (811)
T ss_pred CceeEEEecCCCCCC---cchHHHH-HHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeec
Confidence 889999999998877 8999998 34444432 89999999998642
Q ss_pred --------------------------CCCCCCCCccccc--ccCCCC-CCC--HHHHHHHHHHHHH---cCCEEEEeecc
Q 003226 364 --------------------------SYYASFGYHVTNF--FAPSSR-CGT--PDDLKSLIDKAHE---LGLLVLMDIVH 409 (837)
Q Consensus 364 --------------------------~~~~s~GY~~~~y--~avd~~-~Gt--~edfk~LV~~aH~---~GI~VIlDvV~ 409 (837)
|..-+||||+.=+ -+++|. ++| |+||-.||.++|. ..|+||.|+|+
T Consensus 254 ~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVy 333 (811)
T PF14872_consen 254 PEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVY 333 (811)
T ss_pred ccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeec
Confidence 1123799997532 233432 233 9999999999996 78999999999
Q ss_pred CCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCc
Q 003226 410 SHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGL 489 (837)
Q Consensus 410 NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~ 489 (837)
.|+......-++. .|+. ++.-| .-++|+.+|.||..|++.-+.=++ +|+||+|+|++...-+.
T Consensus 334 GHADNQ~~~LLn~------~flk-GPnMY-----GQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~f---- 396 (811)
T PF14872_consen 334 GHADNQALDLLNR------RFLK-GPNMY-----GQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFF---- 396 (811)
T ss_pred ccccchhhHhhhh------hhcc-CCccc-----cccccccChHHHHHHHHHHHhhcc-cCCceeEecccccceee----
Confidence 9998765433331 2221 22211 247999999999999999999999 99999999998654322
Q ss_pred cccccCCcccccCcccCchHHHHHHHHHHhhhccCC---CeEEEEeccCCCCC
Q 003226 490 QVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP---EAVSIGEDVSGMPT 539 (837)
Q Consensus 490 ~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p---~~~~iaE~~~~~p~ 539 (837)
+..-+.....+ .||.++.+.++++.+ -.++|-|+--.||.
T Consensus 397 --------nplt~~ve~DD--~YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP~ 439 (811)
T PF14872_consen 397 --------NPLTGRVEYDD--AYLLAMSDVVQEIGGARRLPFTIFEDGRPWPQ 439 (811)
T ss_pred --------cccccccccch--HHHHHHHHHHhhccccceeEEEEecCCCcCCc
Confidence 11111122222 489999999988764 36889998655553
No 42
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.65 E-value=1.6e-16 Score=200.29 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=81.8
Q ss_pred ceEEEEecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHH
Q 003226 317 LRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKA 396 (837)
Q Consensus 317 ~~IYE~hv~~f~~~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~a 396 (837)
..+|-++.. ..++|.+++ ++||||++||||+|||+||+++.....|||+++||+.|+|.|||.++|++||++|
T Consensus 744 ~atyrlq~~------~~~tf~~~~-~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~a 816 (1693)
T PRK14507 744 RATYRLQFH------KDFTFADAE-AILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAAL 816 (1693)
T ss_pred ceeEEEEeC------CCCCHHHHH-HHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHH
Confidence 346666544 247999999 6999999999999999999997555679999999999999999999999999999
Q ss_pred HHcCCEEEEeeccCCCCC
Q 003226 397 HELGLLVLMDIVHSHASN 414 (837)
Q Consensus 397 H~~GI~VIlDvV~NH~s~ 414 (837)
|++||+||||+|+||++.
T Consensus 817 h~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 817 KAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred HHCCCEEEEEecccccCC
Confidence 999999999999999984
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.59 E-value=3.5e-13 Score=165.54 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=75.3
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCC----CHHHHHHHHHHHHHc-CCEEEEee
Q 003226 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG----TPDDLKSLIDKAHEL-GLLVLMDI 407 (837)
Q Consensus 333 ~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~G----t~edfk~LV~~aH~~-GI~VIlDv 407 (837)
.|+|.+.. ++|+||++||||+||||||++-.. .++.|++.||+.++|.|| +.++|++||++||++ ||+||+|+
T Consensus 128 mG~~~~w~-~~L~~ik~lGyN~IhftPI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 128 LGPLSEWE-PRLRVAKEKGYNMIHFTPLQELGG-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred cCCHHHHH-HHHHHHHHcCCCEEEeCCCccCCC-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 48998887 799999999999999999997554 468999999999999994 899999999999997 99999999
Q ss_pred ccCCCCCCc
Q 003226 408 VHSHASNNV 416 (837)
Q Consensus 408 V~NH~s~~~ 416 (837)
|+|||+.++
T Consensus 206 V~NHTa~ds 214 (1464)
T TIGR01531 206 VFNHTANNS 214 (1464)
T ss_pred eecccccCC
Confidence 999999876
No 44
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=4.7e-14 Score=161.34 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=75.3
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCC
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
+|.... +.||||++|||.|+|++||+..-....|||||+|+..|+|.+|+.+.|..||.++|++||++|+|||+|||+-
T Consensus 17 tF~~A~-~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 17 TFADAR-ALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred CHHHHH-HhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 677766 6999999999999999999998777789999999999999999999999999999999999999999999986
Q ss_pred C
Q 003226 415 N 415 (837)
Q Consensus 415 ~ 415 (837)
.
T Consensus 96 ~ 96 (889)
T COG3280 96 G 96 (889)
T ss_pred c
Confidence 5
No 45
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.50 E-value=2.5e-14 Score=126.52 Aligned_cols=79 Identities=33% Similarity=0.682 Sum_probs=64.8
Q ss_pred cCCcEEeCC--cEEEEEeCCCcCEEEEEeecCC-CCCCccccc-cCCCceEEEEeCCCCCCCCCCCCC-CEEEEEEeCCC
Q 003226 195 KFGFIRSDT--GITYREWAPGAKSASLIGDFNN-WNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDTPS 269 (837)
Q Consensus 195 ~lG~~~~~~--gv~fr~WAP~A~~V~L~gDfn~-w~~~~~~m~-r~~~GvWei~ip~~~~g~~~~~~g-~~yk~~~~~~~ 269 (837)
+||+|+.++ +++||+|||+|++|.|++++++ |....++|+ +.+.|+|+++||.. +++| ..|+|+|+...
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~------~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGD------LPPGGYYYKYRIDGDD 74 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGC------GTTTT-EEEEEEEETT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCC------cCCCCEEEEEEEEeCC
Confidence 599999986 8999999999999999999999 888889999 68999999999953 4556 59999999887
Q ss_pred C-ccccCCccc
Q 003226 270 G-IKDSIPAWI 279 (837)
Q Consensus 270 ~-~~~~~~~~~ 279 (837)
| ....+||||
T Consensus 75 g~~~~~~DPYA 85 (85)
T PF02922_consen 75 GETPEVVDPYA 85 (85)
T ss_dssp TEEEEET-TT-
T ss_pred CcEEEEeCCCC
Confidence 4 346677775
No 46
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.44 E-value=3.3e-13 Score=123.37 Aligned_cols=92 Identities=20% Similarity=0.334 Sum_probs=75.5
Q ss_pred CCcEEeCCcEEEEEeCCCcCEEEEEeecCCCCC----CccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-CC
Q 003226 196 FGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-SG 270 (837)
Q Consensus 196 lG~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~~----~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~-~~ 270 (837)
||+++..++++|++|||+|++|.|++ |++|+. ..++|.+.++|+|+++|++.. +|..|+|+++++ +.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~-------~g~~Y~y~i~~~~~~ 72 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDL-------EGYYYLYEVKVYKGE 72 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCcc-------CCcEEEEEEEEeceE
Confidence 79999999999999999999999999 888862 357999989999999999754 467999999876 33
Q ss_pred ccccCCccceeeccCCCCCCCCcEEeCCC
Q 003226 271 IKDSIPAWIKFSVQAPGEIPYNGIYYDPP 299 (837)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 299 (837)
.....|||++.+..+.. .++++|++
T Consensus 73 ~~~~~DPyA~~~~~~~~----~s~i~d~~ 97 (100)
T cd02860 73 TNEVVDPYAKALSANGE----RSVDLDDK 97 (100)
T ss_pred EEEEcCcccEeEeeCCC----ceEECChH
Confidence 45788999998765433 47888875
No 47
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.41 E-value=1.1e-12 Score=120.90 Aligned_cols=93 Identities=31% Similarity=0.644 Sum_probs=76.8
Q ss_pred hhcccccCCcEEeC----CcEEEEEeCCCcCEEEEEeecCCCCCCccccccCC-CceEEEEeCCCCCCCCCCCCCCEEEE
Q 003226 189 FSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNE-FGVWEIFLPNNADGSPPIPHGSRVKI 263 (837)
Q Consensus 189 f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~-~GvWei~ip~~~~g~~~~~~g~~yk~ 263 (837)
++..|+.||+|+.+ ++++||+|||+|++|.|+++||+|.....+|++.+ .|+|++++|.. ++|..|+|
T Consensus 3 ~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~-------~~~~~Y~~ 75 (106)
T cd02855 3 HERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGL-------GEGELYKY 75 (106)
T ss_pred chhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCC-------CCCCEEEE
Confidence 45667899999988 78999999999999999999999976677999876 99999999964 34567999
Q ss_pred EEeCCCC-ccccCCccceeeccCCCC
Q 003226 264 HMDTPSG-IKDSIPAWIKFSVQAPGE 288 (837)
Q Consensus 264 ~~~~~~~-~~~~~~~~~~~~~~~~~~ 288 (837)
++...++ .....|||++...+.++.
T Consensus 76 ~v~~~~g~~~~~~DPYa~~~~~~~~~ 101 (106)
T cd02855 76 EILGADGHLPLKADPYAFYSELRPGT 101 (106)
T ss_pred EEECCCCCEEEeeCCCceeeEeCCCC
Confidence 9987543 356789999888776553
No 48
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=99.32 E-value=2.5e-12 Score=116.31 Aligned_cols=89 Identities=34% Similarity=0.546 Sum_probs=72.1
Q ss_pred EEEeecCCCcEEEEEcC-----eEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcccccccCccC
Q 003226 733 YVSRKDQGDRVIVFERG-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYD 807 (837)
Q Consensus 733 ~i~~~~~~~~VlaF~R~-----~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~ 807 (837)
|+.+.+.+++|+||.|. .+|||+||++.+.+.+|++++|.+|+|+++|+||+..|||++..... .+. ..++
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~~~~~-~v~---~~~~ 76 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGKGNSG-EVT---VDSN 76 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSCSETS-EEE---EETT
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCcccccCc-eEE---EeeC
Confidence 67888899999999993 39999999975478899999999999999999999999999763222 221 1223
Q ss_pred CCCeEEEEEECCceEEEEEEe
Q 003226 808 DRPHSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 808 ~~~~~~~l~Lp~~s~~Vl~~~ 828 (837)
+.++|+|||++++||++.
T Consensus 77 ---g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 77 ---GRITVTLPPYSALVLKLK 94 (95)
T ss_dssp ---SEEEEEESTTEEEEEEEE
T ss_pred ---CEEEEEECCCEEEEEEEc
Confidence 349999999999999875
No 49
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.31 E-value=5.7e-12 Score=115.83 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=65.3
Q ss_pred cCCcEEeCCcEEEEEeCCCcCEEEEEeecCCCC-CCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-----
Q 003226 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP----- 268 (837)
Q Consensus 195 ~lG~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~-~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~----- 268 (837)
+||+++.++|++|++|||+|++|.|++ |+++. ...++|++.++|+|+++|++.. +|..|+|+|+++
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~-------~g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIK-------AGQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCC-------CCCEEEEEECCccCccc
Confidence 589999999999999999999999999 66664 4457899988999999999754 467999999872
Q ss_pred ----CCccccCCccceeec
Q 003226 269 ----SGIKDSIPAWIKFSV 283 (837)
Q Consensus 269 ----~~~~~~~~~~~~~~~ 283 (837)
+.....+||||+.+.
T Consensus 73 ~~~~~~~~~~~DPYA~~~~ 91 (103)
T cd02856 73 GLRFNPAKLLLDPYARALD 91 (103)
T ss_pred CcccCCCeEEecCCcceEc
Confidence 222456778887654
No 50
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.23 E-value=5.5e-11 Score=105.37 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=65.3
Q ss_pred CcEEeC-CcEEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccC
Q 003226 197 GFIRSD-TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSI 275 (837)
Q Consensus 197 G~~~~~-~gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~~~~~~ 275 (837)
|+++.+ ++++|+||||+|++|.|++. + + ...+|.+.+.|+|++++++. . |..|+|+++. .....
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~-~-~--~~~~m~~~~~G~W~~~v~~~-~-------g~~Y~y~v~~---~~~~~ 65 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLD-D-G--EEIPMQRDGDGWFEAEVPGA-A-------GTRYRYRLDD---GTPVP 65 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEec-C-C--CcccCccCCCcEEEEEeCCC-C-------CCeEEEEECC---CcCCC
Confidence 788887 78999999999999999983 2 3 35789999999999999975 4 5689999973 24678
Q ss_pred CccceeeccCCCCCCCCcEEeCC
Q 003226 276 PAWIKFSVQAPGEIPYNGIYYDP 298 (837)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~d~ 298 (837)
|||+++....... .|+++||
T Consensus 66 DP~a~~~~~~~~~---~s~v~~~ 85 (85)
T cd02853 66 DPASRFQPEGVHG---PSQVVDP 85 (85)
T ss_pred CCccccCCCCCCC---CeEeeCc
Confidence 8999875332222 5788775
No 51
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.05 E-value=7.1e-10 Score=104.68 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=61.4
Q ss_pred CcEEeCCcEEEEEeCCCcCEEEEEeecCCCCC----CccccccCC---CceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-
Q 003226 197 GFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNE---FGVWEIFLPNNADGSPPIPHGSRVKIHMDTP- 268 (837)
Q Consensus 197 G~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~~----~~~~m~r~~---~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~- 268 (837)
|++++++|++|+||||+|++|.|++ |++|+. ...+|.+.+ .|+|+++|++.. +|..|+|+|+++
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~-------~g~~Y~y~v~g~~ 72 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLK-------PGQLYGYRVDGPF 72 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCC-------CCCEEEEEECCCC
Confidence 7899999999999999999999999 888752 246787655 699999999754 466999999852
Q ss_pred ---CCc-----cccCCccceeec
Q 003226 269 ---SGI-----KDSIPAWIKFSV 283 (837)
Q Consensus 269 ---~~~-----~~~~~~~~~~~~ 283 (837)
.|. ...+|||++.+.
T Consensus 73 ~p~~g~~~~~~~~~~DPYA~a~~ 95 (119)
T cd02852 73 EPEQGHRFDPSKVLLDPYAKAVS 95 (119)
T ss_pred CCCcccccCCCcEEECCCcCeEc
Confidence 222 125778887654
No 52
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.00 E-value=3.2e-10 Score=137.92 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=70.7
Q ss_pred hhhcccccCCcEEeCCcEEEEEeCCCcCEEEEEeecCCCCCCccccccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003226 188 AFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (837)
Q Consensus 188 ~f~~~y~~lG~~~~~~gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~-~~GvWei~ip~~~~g~~~~~~g~~yk~~~~ 266 (837)
...+.|+.||+|....|++|+||||+|++|+|+||||+ +..++|.+. +.|+|+++|| ... |..|||+|.
T Consensus 13 ~~~~~~~~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~--~~~~~m~~~~~~G~w~~~ip-~~~-------g~~YKy~i~ 82 (726)
T PRK05402 13 RHHDPFSVLGPHPTGAGLVVRALLPGAEEVWVILPGGG--RKLAELERLHPRGLFAGVLP-RKG-------PFDYRLRVT 82 (726)
T ss_pred ccCCHHHhcCCCCCCCcEEEEEECCCCeEEEEEeecCC--CccccceEcCCCceEEEEec-CCC-------CCCeEEEEE
Confidence 67888999999998889999999999999999999995 567899874 6899999999 655 558999998
Q ss_pred CCCCc-cccCCccce
Q 003226 267 TPSGI-KDSIPAWIK 280 (837)
Q Consensus 267 ~~~~~-~~~~~~~~~ 280 (837)
+ +|. ....|||+.
T Consensus 83 ~-~g~~~~k~DPyaf 96 (726)
T PRK05402 83 W-GGGEQLIDDPYRF 96 (726)
T ss_pred e-CCceeEecccccc
Confidence 8 664 467788886
No 53
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.90 E-value=4e-09 Score=93.50 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=44.8
Q ss_pred CcEEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCC-CEEEEEEeC
Q 003226 203 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDT 267 (837)
Q Consensus 203 ~gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g-~~yk~~~~~ 267 (837)
+.++|++|||.|++|+|+++||+|. .++|+++++|+|+++++... .| ..|+|.+++
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~--~~~m~~~~~G~W~~~v~~l~-------~g~Y~Y~~~vdg 62 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAG--SHPMTKDEAGVWSVTTGPLA-------PGIYTYSFLVDG 62 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCc--cEeCeECCCeEEEEEECCCC-------CcEEEEEEEECC
Confidence 4699999999999999999998654 57999999999999996432 13 367777654
No 54
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.81 E-value=1.1e-08 Score=89.96 Aligned_cols=55 Identities=31% Similarity=0.500 Sum_probs=46.3
Q ss_pred cEEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003226 204 GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 204 gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~ 267 (837)
.++|++|||.|++|+|+|+||+|+ ..+|++.+.|+|+++++. ..|. ..|||.+++
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~l-~~G~------y~Ykf~vdg 57 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVEL-RPGR------YEYKFVVDG 57 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEeC-CCCc------EEEEEEECC
Confidence 489999999999999999999997 569999888999999973 2232 289999864
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.54 E-value=6e-07 Score=98.74 Aligned_cols=188 Identities=19% Similarity=0.252 Sum_probs=102.6
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCcccc-CCCCCCCCcccccccCCCCCC--CHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~-~~~~s~GY~~~~y~avd~~~G--t~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-..+. +.|+.|+++|+|+|.+-=-... ..|.| -+-+...+......+ +-|=|+.||++||++||.|.--+.++.
T Consensus 17 ~~~~~~-~~l~~l~~~~~N~V~~qVr~~gda~Y~S-~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 17 SKEQID-EMLDDLKSAGFNAVFVQVRPRGDALYPS-DIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEEeCcEEEecc-cccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 334555 7999999999999976221110 11111 011111111111111 257799999999999999999885544
Q ss_pred CCCCccccccCCCCCCCcccccCCCCCccc-----CCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccc
Q 003226 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWM-----WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 486 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~-----w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~ 486 (837)
..... +......+.++.....+.... -+..-||-++||||+||++.++-.++.|.|||+.||-.-.. ...
T Consensus 95 ~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp-~~~ 169 (311)
T PF02638_consen 95 NAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYP-PPS 169 (311)
T ss_pred CCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccccc-ccc
Confidence 33211 001111122221111111000 12245899999999999999999999999999999943111 111
Q ss_pred cCccccccCCcccccC-----cccC-------chHH-HHHHHHHHhhhccCCCeEE
Q 003226 487 HGLQVAFTGNYSEYFG-----FATD-------VDAV-VYLMLVNDMIHGLYPEAVS 529 (837)
Q Consensus 487 ~g~~~~f~~~~~~~~g-----~~~d-------~~a~-~fl~~~~~~v~~~~p~~~~ 529 (837)
.|....-...|..+.| ...| .+.+ .|++++.+.|++++|.+.+
T Consensus 170 ~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~ 225 (311)
T PF02638_consen 170 FGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKF 225 (311)
T ss_pred CCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 1111100011223322 1111 1122 6889999999999998654
No 56
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.49 E-value=5.1e-07 Score=78.55 Aligned_cols=60 Identities=33% Similarity=0.455 Sum_probs=50.7
Q ss_pred CcEEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC
Q 003226 203 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 269 (837)
Q Consensus 203 ~gv~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~ 269 (837)
++++|++|||.|++|.|+++|++| ...++|++.+.|+|++.|+... +++..|+|++....
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~------~~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS------PGKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCC------CCCeEEEEEEeCCC
Confidence 579999999999999999999885 3468999999999999999653 25679999998654
No 57
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.44 E-value=1.3e-06 Score=77.89 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhccCCCCcE-EEEe-ecCCCcEEEEEc----CeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCc
Q 003226 713 FDRAMQHLEEKYGFMTSEHQ-YVSR-KDQGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPL 786 (837)
Q Consensus 713 f~~~Li~LRk~~~~L~~g~~-~i~~-~~~~~~VlaF~R----~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~ 786 (837)
|||+||+||+++|+|+.+.. .+.. ...++.++++.| +.++|++||++ + ..++. ....++.++.++...
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~-~---~~~~~--~~~~~~~l~~s~~~~ 74 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSD-E---PVTVP--EGPWGEVLFSSEPAR 74 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SS-S----EEEE--TSCCEEEEEECSCSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCC-C---cEEcc--CCCCCeEEEcCCCcc
Confidence 79999999999999998833 2322 134566888888 47999999994 2 23343 445567777765543
Q ss_pred cCCccccCCCcccccccCccCCCCeEEEEEECCceEEEE
Q 003226 787 FGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVY 825 (837)
Q Consensus 787 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl 825 (837)
+++ .++|||++++||
T Consensus 75 ~~~------------------------~~~L~p~~~~v~ 89 (89)
T PF11941_consen 75 AGG------------------------AGTLPPWSVVVL 89 (89)
T ss_dssp E--------------------------EEEE-TTEEEEE
T ss_pred ccc------------------------CceECCCEEEEC
Confidence 222 489999999986
No 58
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.42 E-value=4.3e-07 Score=101.91 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=71.9
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCC------HHHHHHHHHHHH-HcCCEEEE
Q 003226 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT------PDDLKSLIDKAH-ELGLLVLM 405 (837)
Q Consensus 333 ~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt------~edfk~LV~~aH-~~GI~VIl 405 (837)
.|.|..-. ++|+.++++|||.|+++|+++-... +--|.+.|...+++.|.. .+++++||.+++ +.||.+|.
T Consensus 18 ~G~~~~W~-~~l~~~~~~GYNmIHftPlq~~G~S-~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~ 95 (423)
T PF14701_consen 18 MGPFSDWE-KHLKVISEKGYNMIHFTPLQERGES-NSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMT 95 (423)
T ss_pred cCCHhHHH-HHHHHHHHcCCcEEEecccccCCCC-CCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEE
Confidence 37777776 6999999999999999999997653 357999999999998765 379999999995 79999999
Q ss_pred eeccCCCCCCc
Q 003226 406 DIVHSHASNNV 416 (837)
Q Consensus 406 DvV~NH~s~~~ 416 (837)
|||+|||+.++
T Consensus 96 DvV~NHtA~nS 106 (423)
T PF14701_consen 96 DVVLNHTANNS 106 (423)
T ss_pred EEeeccCcCCC
Confidence 99999999987
No 59
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.22 E-value=8.7e-05 Score=86.50 Aligned_cols=141 Identities=17% Similarity=0.255 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccC--CCCCCccccccCC-----------CCCCCcccccCCCCCcccCCCcCCCCCCHH
Q 003226 387 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 453 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~N--H~s~~~~~~~~~f-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~~e 453 (837)
++++++.+.||++||++|-|+.+- +-|.+.......| -|.+|.+|... | ..||.|.+|+..-+
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~--G--Q~WG~P~y~w~~l~ 273 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSET--G--QLWGNPVYNWDALR 273 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcc--c--CcCCCCCcCHHHHH
Confidence 345667777999999999999863 3333321111111 36667777653 2 24888888764321
Q ss_pred H--HHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEE
Q 003226 454 V--LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 454 V--r~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~ia 531 (837)
- -+..++-+++-++ .+|.+|+|.+-.+... .-++.+ .-....|.....+..+++..+...+ +++.+||
T Consensus 274 ~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-W~IP~~---~~~a~~G~~v~~p~~~l~~~l~~e~----~~~~vig 343 (497)
T PRK14508 274 KDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-WEIPAG---EKTAINGRWVPGPGKDLFEAVKEEL----GDLPIIA 343 (497)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCC---CCCCCCCeeecCCHHHHHHHHHHHh----CCCCEEE
Confidence 1 2335555666555 7999999987443110 001110 0001112223334445665555444 6789999
Q ss_pred eccCCCCCce
Q 003226 532 EDVSGMPTFC 541 (837)
Q Consensus 532 E~~~~~p~~~ 541 (837)
|+.+--|...
T Consensus 344 EDLG~vp~~V 353 (497)
T PRK14508 344 EDLGVITPDV 353 (497)
T ss_pred eECCCCCHHH
Confidence 9987655444
No 60
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.17 E-value=9e-06 Score=78.04 Aligned_cols=121 Identities=23% Similarity=0.278 Sum_probs=82.3
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCcccccc
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 421 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~ 421 (837)
+.+++||++|+|+|.+..=-- +.+-|-|+.-....|.++ .+-|+++|++||++||+|+.=+-++ .-...
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h----~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~----- 72 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH----GGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDA----- 72 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc----cEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHH-----
Confidence 578899999999998754211 113366777777788887 7889999999999999999766555 21110
Q ss_pred CCCCCCCcccccCCCCC--------cccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecc
Q 003226 422 MFDGTDGHYFHSGSRGY--------HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 422 ~fdg~~~~yf~~~~~g~--------~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
+ ...|.|+..+..|. .+.|-..++| . ..+++++..++--++.|.+|||=||.
T Consensus 73 -~-~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n--s-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 73 -A-ERHPEWFVRDADGRPMRGERFGYPGWYTCCLN--S-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred -H-HhCCceeeECCCCCCcCCCCcCCCCceecCCC--c-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 0 12233443333222 1224445555 3 45589999999999999999998873
No 61
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=4.6e-05 Score=85.60 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=105.2
Q ss_pred HHhhHhhhhhHHHHcCCCEEEECCcccc-CCCCC-----CCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003226 336 YANFRDDVLPRIKRLGYNAVQIMAVQEH-SYYAS-----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt~I~L~Pi~e~-~~~~s-----~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
=.++. +.|+.|+.||+|+|+.-=.-.. ..|.| .++.+ ..+.+++ +-|=|..+|++||++||.|+--+-+
T Consensus 63 ~~el~-~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~-~~~~~~~---g~DpLa~~I~~AHkr~l~v~aWf~~ 137 (418)
T COG1649 63 RQELK-DILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLP-GVLGVDP---GYDPLAFVIAEAHKRGLEVHAWFNP 137 (418)
T ss_pred HHHHH-HHHHHHHHcCCceeEEEEecCccccccccccccccCcC-cccCCCC---CCChHHHHHHHHHhcCCeeeechhh
Confidence 34566 5899999999999975322211 01111 12221 1112222 3467999999999999999999887
Q ss_pred CCCCCCccccccCCCCCCCcccccCCCC----CcccC-CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccc
Q 003226 410 SHASNNVLDGLNMFDGTDGHYFHSGSRG----YHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMY 484 (837)
Q Consensus 410 NH~s~~~~~~~~~fdg~~~~yf~~~~~g----~~~~w-~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~ 484 (837)
--++....... ...+.+......+ .+..| ...-||-++|+||++|.+.+.--+..|.|||.-||-.-.+
T Consensus 138 ~~~a~~~s~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~-- 211 (418)
T COG1649 138 YRMAPPTSPLT----KRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYY-- 211 (418)
T ss_pred cccCCCCChhH----hhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecc--
Confidence 77766431110 0111111111111 01112 3356899999999999999999999999999999975331
Q ss_pred cccCccccccCC--------cccccCcccCch---------HHHHHHHHHHhhhccCCCeEE
Q 003226 485 THHGLQVAFTGN--------YSEYFGFATDVD---------AVVYLMLVNDMIHGLYPEAVS 529 (837)
Q Consensus 485 ~~~g~~~~f~~~--------~~~~~g~~~d~~---------a~~fl~~~~~~v~~~~p~~~~ 529 (837)
+..|... +..--+.-.+.. --.|++.++..|++.+|++.+
T Consensus 212 -----~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~ 268 (418)
T COG1649 212 -----PIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKF 268 (418)
T ss_pred -----cCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEE
Confidence 1122111 001000111222 126889999999999998754
No 62
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.98 E-value=2.1e-05 Score=92.00 Aligned_cols=195 Identities=18% Similarity=0.247 Sum_probs=100.3
Q ss_pred CCCCH-HhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCC--------------------------
Q 003226 332 IINTY-ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG-------------------------- 384 (837)
Q Consensus 332 ~~G~~-~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~G-------------------------- 384 (837)
++|+| ..+. +.++.+++.|+..+||.|+.......++.|.+.+=|+.+|-|=
T Consensus 13 GIGDfg~dl~-~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e~~~~~~~~~~~~~~~~~~~ 91 (496)
T PF02446_consen 13 GIGDFGDDLY-QFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPEFGLLDEAEEIEELAELRDA 91 (496)
T ss_dssp SS--SSHHHH-HHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHHTTSS-----GGGS-S---S
T ss_pred ceecHHHHHH-HHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhhccccchhhhhhhccccccc
Confidence 89999 7777 6999999999999999999987665666788777777665551
Q ss_pred ----------------------------------------------------------C---------------------
Q 003226 385 ----------------------------------------------------------T--------------------- 385 (837)
Q Consensus 385 ----------------------------------------------------------t--------------------- 385 (837)
+
T Consensus 92 ~~VDY~~v~~~K~~~L~~af~~f~~~~~~~~~f~~F~~~~~~wL~~yA~f~al~~~~~~~~w~~WP~~~~~~~~~~~l~~ 171 (496)
T PF02446_consen 92 DRVDYEAVAALKRRALRKAFERFKEQAERREEFEAFCEQNGEWLEDYALFCALKEKFGGAPWREWPEEELRDRDSEALAA 171 (496)
T ss_dssp SB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSGGGS--HHHHTT-HHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhcchhHhHHHHHHHHHHhCCCCcccCCHHHHhhhcHHHHHH
Confidence 1
Q ss_pred -------------------HHHHHHHHHHHHHcCCEEEEeeccC--CCCCCccccccCC-----CCCCCcccccCCCCCc
Q 003226 386 -------------------PDDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLNMF-----DGTDGHYFHSGSRGYH 439 (837)
Q Consensus 386 -------------------~edfk~LV~~aH~~GI~VIlDvV~N--H~s~~~~~~~~~f-----dg~~~~yf~~~~~g~~ 439 (837)
-++++++.+.|+++||++|.|+.+- +-|.+.......| -|.+|.+|... |
T Consensus 172 ~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~fs~~--G-- 247 (496)
T PF02446_consen 172 FREEHADEIEFHKFLQWLAFKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYFSPT--G-- 247 (496)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSSSSS-----
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCCCcc--c--
Confidence 1677888889999999999999853 2222221111122 25667777643 3
Q ss_pred ccCCCcCCCCCCHHH--HHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHH
Q 003226 440 WMWDSRLFNYGSWEV--LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVN 517 (837)
Q Consensus 440 ~~w~~~~ln~~~~eV--r~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~ 517 (837)
..||.|.+|+..-+- -+..++-+++-++ .+|++|+|.+..+... .-++. +......|.....+..+++..+.
T Consensus 248 Q~WG~P~y~w~~l~~~gy~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~-W~IP~---~~~~a~~G~~~~~p~~~ll~~l~ 321 (496)
T PF02446_consen 248 QNWGNPPYNWDALKEDGYRWWIDRLRANMR--LFDALRIDHFRGFFRY-WWIPA---GGETAIDGAWVRYPGEDLLAILA 321 (496)
T ss_dssp EEEEEE-B-HHHHHHTTTHHHHHHHHHHHC--C-SEEEEETGGGGTEE-EEEET---T-SSSTT-EEEE--HHHHHHHHH
T ss_pred ccCCCCCcCHHHHHHcCCHHHHHHHHHHHH--hCCchHHHHHHHHHhe-eEecC---CCCCCCCceeecchHHHHHHHHH
Confidence 247777776642111 1334555555554 8999999987544211 01111 01111122222334445666665
Q ss_pred HhhhccCCCeEEEEeccCCCCCc
Q 003226 518 DMIHGLYPEAVSIGEDVSGMPTF 540 (837)
Q Consensus 518 ~~v~~~~p~~~~iaE~~~~~p~~ 540 (837)
...+. ++.+|||+.+-.|..
T Consensus 322 ~e~~r---~~~vigEDLG~vp~~ 341 (496)
T PF02446_consen 322 LESGR---DCLVIGEDLGTVPPE 341 (496)
T ss_dssp HHHS----S-EEEE--TSS--HH
T ss_pred HHcCC---CCcEEEeecCCCcHH
Confidence 55543 789999998655543
No 63
>PLN02950 4-alpha-glucanotransferase
Probab=97.97 E-value=0.00062 Score=84.50 Aligned_cols=191 Identities=12% Similarity=0.107 Sum_probs=99.3
Q ss_pred cceecCCCCcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEe---CC--cEEEEEeCCC---cCEEEEEe
Q 003226 150 NIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRS---DT--GITYREWAPG---AKSASLIG 221 (837)
Q Consensus 150 ~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~---~~--gv~fr~WAP~---A~~V~L~g 221 (837)
.+.-.|.|-..-...+.+|-. |++ -|+...-++ +--.+++++.. .+ .|+|++=+|+ -++|+|+|
T Consensus 103 ~~~i~D~W~~~~~~~~~~~s~-f~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~v~V~F~v~~~~~~~Gq~v~VvG 174 (909)
T PLN02950 103 LVELHDLWQKSGPEALFFRSA-FKD---VIFRHSWGV----NTERPLGALNKPPAPDEIVVRFKIACPRLEEGTSVYVTG 174 (909)
T ss_pred eEEEEEEecCCchhhhhhHHH-Hhh---hhccccccc----ccccccccccccCCCCceeEEEEEecCccCCCCeEEEEe
Confidence 444567786655555555442 432 232211000 00124444432 22 3899999984 57899998
Q ss_pred e---cCCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCccceeeccCCCCCCCCcE-Ee
Q 003226 222 D---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGI-YY 296 (837)
Q Consensus 222 D---fn~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 296 (837)
+ +-+|+.. +..|.......|++.+.-.. +. -...|||.+...+|....-. -.......+........ +.
T Consensus 175 s~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~-~~----~~~EYKyv~~~~~g~v~WE~-g~NR~~~~p~~~~~~~~~~~ 248 (909)
T PLN02950 175 SIAQLGNWQVDDGLKLNYTGDSIWEADCLVPK-SD----FPIKYKYALQTAEGLVSLEL-GVNRELSLDSSSGKPPSYIV 248 (909)
T ss_pred chhhcCCCCcccccccccCCCCcEEEEEEecC-CC----ceEEEEEEEEcCCCceEEee-CCCceeecCcccCCceEEEe
Confidence 5 5689864 46787777899999986422 11 12489998876554321000 00001111111001111 11
Q ss_pred CCCccccccccCCCCCCCCCceEEEEecCCCCC--CCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccc
Q 003226 297 DPPEEEKYVFQHPQPKKPKSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH 363 (837)
Q Consensus 297 d~~~~~~~~~~~~~~~~~~~~~IYE~hv~~f~~--~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~ 363 (837)
.+. ..++. +.....-++ +|+-+-.. +-++|+|.++. +.++.+++.|.+.|||+|+.+.
T Consensus 249 ~~~----~~~~~--~~~R~~Gi~--~~l~SLrS~~s~GIGDf~dl~-~~id~~a~~G~~~~QilPl~~t 308 (909)
T PLN02950 249 ASD----GAFRE--MPWRGAGVA--VPVFSIRSEEDVGVGEFLDLK-LLVDWAVKSGLHLVQLLPVNDT 308 (909)
T ss_pred ccc----ccccC--CCccceEEE--EecccCCCCCCCCeeCHHHHH-HHHHHHHHcCCCEEEECCCCCC
Confidence 111 01111 111112122 22222212 23789999888 7999999999999999999653
No 64
>PLN02635 disproportionating enzyme
Probab=97.94 E-value=8.7e-05 Score=86.68 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCEEEEeec--cCCCCCCccccccCC-----------CCCCCcccccCCCCCcccCCCcCCCCCCH-
Q 003226 387 DDLKSLIDKAHELGLLVLMDIV--HSHASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSW- 452 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV--~NH~s~~~~~~~~~f-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~~- 452 (837)
++++++-+.||++||++|-|+. .++-|.+.......| -|.+|.||... | ..||.|.+|+..-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~--G--Q~WG~P~y~w~~l~ 299 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET--G--QLWGSPLYDWKAMA 299 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc--c--ccCCCcCcCHHHHH
Confidence 4566778889999999999998 455554431111111 26677788653 2 3588888876421
Q ss_pred -HHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCC---cccccCcccCchHHHHHHHHHHhhhccCCCeE
Q 003226 453 -EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGN---YSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 528 (837)
Q Consensus 453 -eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~---~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~ 528 (837)
.--+..++-+++-++ .+|.+|+|.+-.+ ..-|.=. -....|.....+..+++. ++.+..+++.
T Consensus 300 ~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf-------~r~W~IP~g~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~ 366 (538)
T PLN02635 300 KDGYSWWAGRMRRALE--LYDEFRIDHFRGF-------AGYWAVPADAKTAMNGRWKVGPGKSFFD----AIKKAVGKID 366 (538)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhh-------heeeeccCCCCCCCCCeeeeCCHHHHHH----HHHHHcCCCC
Confidence 112335555666565 7999999976433 2211100 001122233344445554 3455556899
Q ss_pred EEEeccCCCCC
Q 003226 529 SIGEDVSGMPT 539 (837)
Q Consensus 529 ~iaE~~~~~p~ 539 (837)
+|||+.+--|.
T Consensus 367 vIaEDLG~I~~ 377 (538)
T PLN02635 367 IIAEDLGVITE 377 (538)
T ss_pred EEEeeCCCCCH
Confidence 99999865544
No 65
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.91 E-value=2.8e-05 Score=67.94 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=43.2
Q ss_pred EEEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003226 205 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 205 v~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~ 267 (837)
|+|+..+ .|++|+|+|+||+|+. ..||.|...| |+++++.. .|. ..|||.+++
T Consensus 4 v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~L~-~g~------y~YkF~Vdg 56 (79)
T cd02859 4 TTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLRLP-PGK------YQYKFIVDG 56 (79)
T ss_pred EEEEEcC-CCcEEEEEEEcCCCCc-cccceECCCC-cEEEEEcC-CCC------EEEEEEECC
Confidence 7898888 8999999999999987 6899998878 99998632 232 379998864
No 66
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.83 E-value=3.1e-05 Score=89.58 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=62.1
Q ss_pred CCceEEEEecCCCCC---CCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCC-------CCCcccccccC----C
Q 003226 315 KSLRIYEAHVGMSST---EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYAS-------FGYHVTNFFAP----S 380 (837)
Q Consensus 315 ~~~~IYE~hv~~f~~---~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s-------~GY~~~~y~av----d 380 (837)
..-+|||-+-- |.. .+.--+..-|+ +-.+-+|++|||..||-|-+.+...++ -||.-+|-|.+ .
T Consensus 563 DSqvIYEgFSN-FQ~~~t~~~eytN~~IA-~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~p 640 (809)
T PF02324_consen 563 DSQVIYEGFSN-FQDFPTTPSEYTNVVIA-KNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKP 640 (809)
T ss_dssp HT-EEEE---T-TB---SSGGGSHHHHHH-HTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-
T ss_pred hcchhhccccc-cccCCCChHHHHHHHHH-HhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCC
Confidence 35689996532 222 12223445566 688999999999999999998776665 58999988775 3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCC
Q 003226 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
-.|||.+||+.-|+++|+.||+||-|||++.+..
T Consensus 641 tKYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 641 TKYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 6899999999999999999999999999987753
No 67
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.74 E-value=0.0015 Score=83.98 Aligned_cols=142 Identities=17% Similarity=0.202 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCEE--EEeeccC--CCCCCcccc-----ccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHH--H
Q 003226 387 DDLKSLIDKAHELGLLV--LMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--L 455 (837)
Q Consensus 387 edfk~LV~~aH~~GI~V--IlDvV~N--H~s~~~~~~-----~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV--r 455 (837)
++++++-+.|+++||+| |-|+.+. +-|.+.... +..--|.+|.+|... | ..|+.|.+|+..-+- -
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f~l~~~~GaPPD~fs~~--G--Q~WG~P~y~w~~l~~~gy 1007 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCFALDVSIGAPPDYFNPE--G--QNWGLPPYDPRALRRDGY 1007 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHhcCCCccCCCCCcCCcc--c--ccCCCcCcCHHHHHhcCc
Confidence 45677888899999999 9999863 333332111 122347778888653 3 258888887643211 2
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccC
Q 003226 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (837)
Q Consensus 456 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~ 535 (837)
+..++-++.-++ ++|++|+|.+..+... --++.+-+ ...|.....+.-+++..+....+. .++.+|||+.+
T Consensus 1008 ~~w~~rlr~~~~--~~~~lRIDH~~G~~r~-W~IP~~~~----a~~G~~v~~P~~~l~~~l~~e~~r--~~~~vIgEDLG 1078 (1221)
T PRK14510 1008 RWFIERIRANMR--HAGALRIDHVRGLERL-FEVPQGAS----AKEGAYLKGPGEELFGQVALESQR--AQCPVIGEDLG 1078 (1221)
T ss_pred HHHHHHHHHHHH--hCCeEEeccHHhhHHh-eeCCCCCC----CCCCeEEECCHHHHHHHHHHHhCc--cCCcEEEeeCC
Confidence 335666666666 8999999987543211 00110000 111222222334555555444432 36899999986
Q ss_pred CCCCce
Q 003226 536 GMPTFC 541 (837)
Q Consensus 536 ~~p~~~ 541 (837)
--|...
T Consensus 1079 ~vp~~v 1084 (1221)
T PRK14510 1079 TIPSGV 1084 (1221)
T ss_pred cCCHHH
Confidence 555433
No 68
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.50 E-value=0.002 Score=73.06 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=81.2
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCccccC---CCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCC
Q 003226 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHS---YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~---~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
..+. +.++.++++||+.+.|===+-.. ...+.|.+..| ..+| |+.|+.|++.+|++||+.=|-+-+--++
T Consensus 58 ~~i~-~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~----~~kF--P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 58 EKIL-ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD----PKKF--PNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHH-HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB----TTTS--TTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHH-HHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC----hhhh--CCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 3444 57888899999998763322211 11122322221 2355 4679999999999999999999877665
Q ss_pred CCccccccCCCCCCCcccccCCCCCc-ccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccc
Q 003226 414 NNVLDGLNMFDGTDGHYFHSGSRGYH-WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 414 ~~~~~~~~~fdg~~~~yf~~~~~g~~-~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
.++. .+. ..+.|......... .......||+.+|+|+++|.+.+...++++|||.|.+|....+
T Consensus 131 ~~S~----l~~-~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 131 PDSD----LYR-EHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp SSSC----HCC-SSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred chhH----HHH-hCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 5531 111 12233322111111 1112246999999999999999999999999999999987655
No 69
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.42 E-value=0.0021 Score=70.88 Aligned_cols=131 Identities=11% Similarity=0.208 Sum_probs=85.8
Q ss_pred CHHhhHhhhhhHHHHcC--CCEEEECCccccCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 335 TYANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LG--vt~I~L~Pi~e~~~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-..+. +.+..+++.| +++|+|=.=+.. +|.-.+ |..+ .+|-. .++||+++|++|++|++-+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~~~lD~~w~~------~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~ 89 (308)
T cd06593 22 DEEEVN-EFADGMRERNLPCDVIHLDCFWMK------EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-Y 89 (308)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEeccccc------CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-C
Confidence 445565 6889999999 667777543321 122123 4444 47764 589999999999999999876 5
Q ss_pred CCCCccccccCCC-CCCCcccccCCCCCc---ccC--CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccc
Q 003226 412 ASNNVLDGLNMFD-GTDGHYFHSGSRGYH---WMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 412 ~s~~~~~~~~~fd-g~~~~yf~~~~~g~~---~~w--~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
.+.++. .|. +....||-....+.. ..| ....+|+.||++++++.+.++.+++ +|||||-+|....+
T Consensus 90 i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e~~ 161 (308)
T cd06593 90 IAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGVDCFKTDFGERI 161 (308)
T ss_pred CCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCCcEEecCCCCCC
Confidence 554431 111 111233332222111 112 2356899999999999999999888 89999999987654
No 70
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.28 E-value=0.0014 Score=72.08 Aligned_cols=128 Identities=22% Similarity=0.409 Sum_probs=83.3
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-.++. +.++.++++|+ +.|+|=-=+.. .+| + |..+ .+|- +.++||+++|++|+++++=+-+ +
T Consensus 28 s~~~v~-~~~~~~~~~~iP~d~i~iD~~w~~----~~g----~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~ 93 (303)
T cd06592 28 NQETVL-NYAQEIIDNGFPNGQIEIDDNWET----CYG----D-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-F 93 (303)
T ss_pred CHHHHH-HHHHHHHHcCCCCCeEEeCCCccc----cCC----c-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-e
Confidence 345666 58888999994 67776432211 122 2 3333 3664 3789999999999999999887 4
Q ss_pred CCCCccccccCCC-CCCCcccccCCCC----CcccCC--CcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 412 ASNNVLDGLNMFD-GTDGHYFHSGSRG----YHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 412 ~s~~~~~~~~~fd-g~~~~yf~~~~~g----~~~~w~--~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
++.+.. .|. +....||-....+ ....|. ...+|+.||++++.+.+.++..+.++|||||-+|...
T Consensus 94 i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 94 INTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred eCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 443321 111 2223344333222 011232 2468999999999999999999977999999999764
No 71
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.26 E-value=0.0012 Score=73.02 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=85.3
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcc-cccccCCC-CCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHV-TNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~-~~y~avd~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+-.++. +.++.+++.|| ++|||- .+..-...++||.. .+ |..++ +|- +.++||+++|++|++|++-+. .
T Consensus 21 s~~~v~-~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P 93 (317)
T cd06594 21 GTDKVL-EALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-P 93 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-C
Confidence 556676 68888998876 678885 33111112344421 12 23333 554 467999999999999999554 4
Q ss_pred CCCCCccccccCCCCCCCcccccCCCC-----CcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 411 HASNNVLDGLNMFDGTDGHYFHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 411 H~s~~~~~~~~~fdg~~~~yf~~~~~g-----~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
++..+..... -++....||-....+ ..|.+....+|+.||++++...+.++..+.++|||||-+|+-.
T Consensus 94 ~v~~~~~~~y--~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 94 YLADDGPLYY--EEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGE 166 (317)
T ss_pred ceecCCchhH--HHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 5544321100 012222344333222 1222344679999999999999999988667999999999653
No 72
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.05 E-value=0.0036 Score=69.98 Aligned_cols=142 Identities=23% Similarity=0.305 Sum_probs=82.3
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCccccCC--------------CCCCCCcccccccCCCCCCCHHHHHHHHHHHHH
Q 003226 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSY--------------YASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHE 398 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~--------------~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~ 398 (837)
+-.++. +.++.+++.|| ++|+|=+-+.... ...|-|+... |....+|- +.++||+++|+
T Consensus 22 ~~~ev~-~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~-f~~~~~FP---dp~~mi~~Lh~ 96 (340)
T cd06597 22 TQAEVM-RQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFS-FPVEGRWP---NPKGMIDELHE 96 (340)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccc-cCccccCC---CHHHHHHHHHH
Confidence 334555 57888888886 6777753111000 0011122222 11123443 57899999999
Q ss_pred cCCEEEEeeccCCCCCC-cccc--ccCC-CCCCCcccccCCCCCc----ccC--CCcCCCCCCHHHHHHHHHHHHHHHHH
Q 003226 399 LGLLVLMDIVHSHASNN-VLDG--LNMF-DGTDGHYFHSGSRGYH----WMW--DSRLFNYGSWEVLRFLLSNARWWLEE 468 (837)
Q Consensus 399 ~GI~VIlDvV~NH~s~~-~~~~--~~~f-dg~~~~yf~~~~~g~~----~~w--~~~~ln~~~~eVr~~l~~~l~~Wl~e 468 (837)
+|++|++-+.+ ++..+ +... ...+ .+....||-....|.. ..| ....+|+.||++++...+.++.++++
T Consensus 97 ~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~ 175 (340)
T cd06597 97 QGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDE 175 (340)
T ss_pred CCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHh
Confidence 99999996554 22211 1000 0001 1112234443333211 123 34679999999999999999999988
Q ss_pred cCCCeEEecccccc
Q 003226 469 YKFDGFRFDGVTSM 482 (837)
Q Consensus 469 ~gvDGfR~D~v~~m 482 (837)
+|||||-+|+....
T Consensus 176 ~Gidg~w~D~~E~~ 189 (340)
T cd06597 176 LGIDGFKTDGGEHV 189 (340)
T ss_pred cCCcEEEecCCCcc
Confidence 99999999987643
No 73
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=97.02 E-value=0.016 Score=67.99 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccC--CCCCCccccc----------cC-CCCCCCcccccCCCCCcccCCCcCCCCCCHH
Q 003226 387 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGL----------NM-FDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 453 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~N--H~s~~~~~~~----------~~-fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~e 453 (837)
++++++-+.|+++||++|-|+.+- +-|.+..... .. .+|.+|.||.... ..|+.|.+|+..-+
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~G----Q~WG~P~y~w~~l~ 287 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQG----QNWGLPPYDWNVLK 287 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCcccccC----CCCCCCCcCHHHHH
Confidence 455667777889999999999863 2232221000 11 3444477776532 35888888774321
Q ss_pred --HHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEE
Q 003226 454 --VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 454 --Vr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~ia 531 (837)
--+..++-++.=++ .+|++|+|.+..+... .-++.+- -....|.....+..+++..+....... +.+||
T Consensus 288 ~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~-w~IP~g~---~ta~~G~wv~~Pg~~l~~~l~~e~~~~---~~vIa 358 (513)
T TIGR00217 288 ARGYEWWIKRLGANMQ--YADILRIDHFRGFVSL-WWVPAGE---STAFNGAWVHYPGDDFFNILANESKDN---LKIIG 358 (513)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeEeCCHHHHHHHHHHHcCCC---CcEEe
Confidence 11335555565555 7999999987443110 0111110 011122233344556666555544321 78999
Q ss_pred eccCCCCC
Q 003226 532 EDVSGMPT 539 (837)
Q Consensus 532 E~~~~~p~ 539 (837)
|+.+--|.
T Consensus 359 EDLG~v~~ 366 (513)
T TIGR00217 359 EDLGTVPE 366 (513)
T ss_pred eeCCCCCH
Confidence 99865444
No 74
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0011 Score=78.56 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=68.1
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCC------CHHHHHHHHHHHHH-cCCEEEEe
Q 003226 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG------TPDDLKSLIDKAHE-LGLLVLMD 406 (837)
Q Consensus 334 G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~G------t~edfk~LV~~aH~-~GI~VIlD 406 (837)
|-+.+-. .+|.-+|+.|||.|+++|++|-.. .+--|...|-..+++.|. +.+|.++||+.+|+ -||--|-|
T Consensus 139 Gpl~eWe-prL~va~e~gYNmIHfTPlqelG~-S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 139 GPLDEWE-PRLRVAKESGYNMIHFTPLQELGL-SRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred CChhhhh-HHHHHHHHcCCceEeeeeHHHhcc-CCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 5555554 689999999999999999999654 234688888778877776 68999999999996 69999999
Q ss_pred eccCCCCCCc
Q 003226 407 IVHSHASNNV 416 (837)
Q Consensus 407 vV~NH~s~~~ 416 (837)
||+||++.+.
T Consensus 217 vV~NHtAnns 226 (1521)
T KOG3625|consen 217 VVYNHTANNS 226 (1521)
T ss_pred hhhhccccCC
Confidence 9999999986
No 75
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.66 E-value=0.026 Score=66.26 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=31.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHH---------HcCCCeEEecccccc
Q 003226 445 RLFNYGSWEVLRFLLSNARWWLE---------EYKFDGFRFDGVTSM 482 (837)
Q Consensus 445 ~~ln~~~~eVr~~l~~~l~~Wl~---------e~gvDGfR~D~v~~m 482 (837)
.++|-+||-|+.+-+.++-|.|. +..+||||+|||..+
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV 190 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV 190 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc
Confidence 57899999999999999999998 678999999999766
No 76
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.62 E-value=0.041 Score=66.83 Aligned_cols=187 Identities=14% Similarity=0.186 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCC--EEEEeeccC--CCCCCcccc-----ccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHH--H
Q 003226 387 DDLKSLIDKAHELGL--LVLMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--L 455 (837)
Q Consensus 387 edfk~LV~~aH~~GI--~VIlDvV~N--H~s~~~~~~-----~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV--r 455 (837)
++++++.+.|+++|| ++|-|+.+- +-|.+.... +..--|.+|.+|.... ..|+.+.+|+..-.- -
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~G----Q~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPLG----QNWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCccc----ccCCCcCcCHHHHHhcCc
Confidence 678888899999999 679999763 333332111 1122467777886542 248888877642111 1
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccC
Q 003226 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (837)
Q Consensus 456 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~ 535 (837)
+..++-++.-++ ++|++|+|.+..+... .-++.+- ....|.....+.-+++..+ ++.+..+++.+|||+.+
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl~rl-W~IP~g~----~a~~G~yv~~P~~~ll~~l--ales~~~~~~vIgEDLG 501 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSLLRL-WWIPYGE----TADQGAYVHYPVDDLLAIL--ALESQRHRCMVIGEDLG 501 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhhhee-eecCCCC----CCCCCeeEeCCHHHHHHHH--HHHHhcCCCCEEEeeCC
Confidence 235555565566 7999999987543211 0111110 1111222222333344322 22445568899999986
Q ss_pred CCCCceecccc-CCc-ccchhcchhhHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCcccccc
Q 003226 536 GMPTFCIPVQD-GGV-GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALV 604 (837)
Q Consensus 536 ~~p~~~~~~~~-ggl-gFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~ 604 (837)
--|...+.... -|+ |+. +. ++... .+ +. ......|+.++|.|+.+||+.++
T Consensus 502 ~Vp~~Vr~~l~~~gi~g~~------Vl-----~Fe~~-~~---~~---~~~P~~y~~~sva~t~THD~pTl 554 (695)
T PRK11052 502 TVPVEIVGKLRDSGVYSYK------VL-----YFEND-EE---GG---FRAPAAYPEQSMATLTTHDLPTL 554 (695)
T ss_pred CCCHHHHHHHHHcCCCCcE------EE-----Eeccc-CC---CC---CCCcccCcCCeEEECCCCCChhH
Confidence 55543322221 111 111 00 00000 00 00 01124567789999999999875
No 77
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.61 E-value=0.031 Score=59.94 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=81.2
Q ss_pred hHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCC--CHHHHHHHHHHHHHcCCEEEEeeccCCCCCCc
Q 003226 339 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 416 (837)
Q Consensus 339 ~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~G--t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~ 416 (837)
.+++.++.|+++|+|+|-|.--++......-+| .+. ..+.|+++|+.|+++||+||||+--.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~----------~~~~~~~~~ld~~v~~a~~~gi~vild~h~~------ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY----------NYDETYLARLDRIVDAAQAYGIYVILDLHNA------ 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT----------SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES------
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc----------cccHHHHHHHHHHHHHHHhCCCeEEEEeccC------
Confidence 456799999999999998865532111111111 122 26899999999999999999997543
Q ss_pred cccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHc----CCCeEEecccccccccccCcccc
Q 003226 417 LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY----KFDGFRFDGVTSMMYTHHGLQVA 492 (837)
Q Consensus 417 ~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~----gvDGfR~D~v~~m~~~~~g~~~~ 492 (837)
+.|.. ............+++.+.++.+...| .|-|| +.+
T Consensus 86 -----------~~w~~-----------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~--el~------------- 128 (281)
T PF00150_consen 86 -----------PGWAN-----------GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGW--ELW------------- 128 (281)
T ss_dssp -----------TTCSS-----------STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEE--ESS-------------
T ss_pred -----------ccccc-----------cccccccchhhHHHHHhhhhhhccccCCCCcEEEE--Eec-------------
Confidence 01100 01112223345566777777777776 33333 211
Q ss_pred ccCCcccccCccc-------CchH-HHHHHHHHHhhhccCCCeEEEEec
Q 003226 493 FTGNYSEYFGFAT-------DVDA-VVYLMLVNDMIHGLYPEAVSIGED 533 (837)
Q Consensus 493 f~~~~~~~~g~~~-------d~~a-~~fl~~~~~~v~~~~p~~~~iaE~ 533 (837)
+|...... +... ..+.+.+.+.|++..|+.+++.+.
T Consensus 129 -----NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 129 -----NEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp -----SSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred -----CCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 11111110 1122 368889999999999988777775
No 78
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=96.52 E-value=0.04 Score=66.37 Aligned_cols=132 Identities=14% Similarity=0.030 Sum_probs=81.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCC--CCcccccccC-CCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF--GYHVTNFFAP-SSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~--GY~~~~y~av-d~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-+.+. ..|+.|+++|+|+|+|-.+.+....+.+ -|-|..+.-+ ++-|. -+.-.+ +|++|++|..-+-+--
T Consensus 332 q~~~L~-~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~---~~aw~l--~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 332 QDRNID-VLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN---RVAWQL--RTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC---HHHHHH--HHhhCCEEEEecccee
Confidence 345665 7999999999999999887665432221 1333332222 11121 122222 9999999998876554
Q ss_pred CCCCc-cccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEeccc
Q 003226 412 ASNNV-LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 412 ~s~~~-~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
++-+. ......++ ....+...++.|..+ ||-.+|+||+.|.++..-.+..+.|||+-||-=
T Consensus 406 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd 467 (671)
T PRK14582 406 FDLDPTLPRVKRLD------TGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDD 467 (671)
T ss_pred eccCCCcchhhhcc------ccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEeccc
Confidence 43211 00000110 001111234556555 999999999999999999999889999999853
No 79
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.49 E-value=0.014 Score=64.78 Aligned_cols=131 Identities=14% Similarity=0.219 Sum_probs=77.4
Q ss_pred CHHhhHhhhhhHHHHcC--CCEEEECCccccCCCCCCCCcccccccCCC-CCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 335 TYANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LG--vt~I~L~Pi~e~~~~~s~GY~~~~y~avd~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-.++. +.++.+++.| +++|+|=- .+....|+ .-|..++ +|-. .++||+.+|++|++||+-+. -+
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD~----~~~~~~~~---~~f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~-P~ 89 (319)
T cd06591 22 TQEELL-DVAKEYRKRGIPLDVIVQDW----FYWPKQGW---GEWKFDPERFPD---PKAMVRELHEMNAELMISIW-PT 89 (319)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEec----hhhcCCCc---eeEEEChhhCCC---HHHHHHHHHHCCCEEEEEec-CC
Confidence 334555 5777887775 46776631 11111121 1233333 6654 46899999999999999554 44
Q ss_pred CCCCccccccCCCCCCCcccccCCCC--CcccCC--CcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 412 ASNNVLDGLNMFDGTDGHYFHSGSRG--YHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g--~~~~w~--~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
+..+..... ++....||-....+ +...|. ...+|+.||++++...+.++..+.++|||||-+|...
T Consensus 90 v~~~~~~y~---e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 90 FGPETENYK---EMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred cCCCChhHH---HHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 543321000 11112344333222 112333 3579999999999988877665556999999999864
No 80
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.46 E-value=0.032 Score=61.32 Aligned_cols=174 Identities=24% Similarity=0.231 Sum_probs=97.7
Q ss_pred hhhhhHHHHcCCCEEEECCccccCC-CCCCCCccccccc--CCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCcc
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSY-YASFGYHVTNFFA--PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL 417 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~-~~s~GY~~~~y~a--vd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~ 417 (837)
++.|+.|++-|+|+|.+ +-.. ++.-.|....--+ +...-....|+++|++.||++||.+|-=+|.= ++..
T Consensus 16 ~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F---kD~~ 88 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF---KDPV 88 (316)
T ss_pred HHHHHHHHhcCCceEEE----EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe---cChH
Confidence 47899999999999954 3221 1222233222111 11111225799999999999999999999841 1110
Q ss_pred ccccCCCCCCCcccccCCCCCccc--CCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccC
Q 003226 418 DGLNMFDGTDGHYFHSGSRGYHWM--WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG 495 (837)
Q Consensus 418 ~~~~~fdg~~~~yf~~~~~g~~~~--w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~ 495 (837)
+.. ..+.|--....|..|. -+..-+|-.+++|++|+++.++-..+ .|||..-||-+-.=- .+.....
T Consensus 89 --la~---~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRFP~---~~~~~~l-- 157 (316)
T PF13200_consen 89 --LAE---AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK-LGFDEIQFDYIRFPD---EGRLSGL-- 157 (316)
T ss_pred --Hhh---hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHH-cCCCEEEeeeeecCC---CCccccc--
Confidence 000 0112211122222221 01234788899999999999999998 899999999874311 0100000
Q ss_pred CcccccCcccCchHH-HHHHHHHHhhhccCCCeEEEEecc
Q 003226 496 NYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGEDV 534 (837)
Q Consensus 496 ~~~~~~g~~~d~~a~-~fl~~~~~~v~~~~p~~~~iaE~~ 534 (837)
.|+.......-.+++ .|++.+++.++.. ++.+=+..+
T Consensus 158 ~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~--~v~vSaDVf 195 (316)
T PF13200_consen 158 DYSENDTEESRVDAITDFLAYAREELHPY--GVPVSADVF 195 (316)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHhHc--CCCEEEEec
Confidence 111110111123455 7999999999765 344444443
No 81
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.23 E-value=0.0065 Score=67.28 Aligned_cols=131 Identities=17% Similarity=0.204 Sum_probs=79.4
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCCC-CCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-.++. +.+..+++.+| +.|+|=.=+- . +|. + |..++ +|- +.++||+.+|++|++|++-+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~-~-----~~~--~-f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P-~ 87 (317)
T cd06600 22 PQDKVV-EVVDIMQKEGFPYDVVFLDIHYM-D-----SYR--L-FTWDPYRFP---EPKKLIDELHKRNVKLVTIVDP-G 87 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCcceEEEChhhh-C-----CCC--c-eeechhcCC---CHHHHHHHHHHCCCEEEEEeec-c
Confidence 345555 57788887776 6677642111 1 121 1 22222 554 4579999999999999996644 3
Q ss_pred CCCCccccccCCCCCCCcccccCCCCC---cccCC--CcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 412 ASNNVLDGLNMFDGTDGHYFHSGSRGY---HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~---~~~w~--~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
+..+.. ......+....||.....+. ...|. ...+|+.||++++...+.++..+.+.|||||=+|...
T Consensus 88 i~~~~~-~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 88 IRVDQN-YSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred ccCCCC-ChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 433210 00001122234444333221 12232 3468999999999999999999877999999999753
No 82
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.17 E-value=0.037 Score=65.32 Aligned_cols=127 Identities=20% Similarity=0.319 Sum_probs=69.9
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCC------------CCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS------------SRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd------------~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
++.|+.|++.=+|.||+= .|-|.-...+..+ .|-=..+-+|.+|++||+.||++|.=.-
T Consensus 121 ~~~i~~L~~yHIN~~QFY---------DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynm 191 (559)
T PF13199_consen 121 EAEIDQLNRYHINGLQFY---------DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNM 191 (559)
T ss_dssp HHHHHHHHHTT--EEEET---------S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHhhCcCeEEEE---------eeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHh
Confidence 378999999999999862 2333322222222 2222378999999999999999987543
Q ss_pred cCCCCCCccccccCCCCCCCccc--ccCCCC------CcccCCC--cCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecc
Q 003226 409 HSHASNNVLDGLNMFDGTDGHYF--HSGSRG------YHWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 409 ~NH~s~~~~~~~~~fdg~~~~yf--~~~~~g------~~~~w~~--~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
..-+..+. ..+|..+.|+ ...... ....|.+ -.+|.+|++-|++|++.+...++++|||||.+|.
T Consensus 192 iyaa~~~~-----~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq 266 (559)
T PF13199_consen 192 IYAANNNY-----EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQ 266 (559)
T ss_dssp SSEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-
T ss_pred hhccccCc-----ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeec
Confidence 33222221 1123333322 111110 0112433 4689999999999999999999999999999999
Q ss_pred ccc
Q 003226 479 VTS 481 (837)
Q Consensus 479 v~~ 481 (837)
+..
T Consensus 267 ~G~ 269 (559)
T PF13199_consen 267 LGN 269 (559)
T ss_dssp S--
T ss_pred cCC
Confidence 863
No 83
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.00 E-value=0.012 Score=65.14 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=77.4
Q ss_pred hhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCC
Q 003226 338 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 338 ~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
++. +.+..+++.|| ++|+|-+=+.... |-.-.+ |..+ .+|- +.++||+++|++|++|++-+.+- +..
T Consensus 30 ~v~-~~~~~~r~~~iP~d~i~ld~~~~~~~----~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~ 99 (317)
T cd06599 30 ALL-EFIDKCREHDIPCDSFHLSSGYTSIE----GGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQ 99 (317)
T ss_pred HHH-HHHHHHHHcCCCeeEEEEeccccccC----CCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccC
Confidence 444 57788888886 7777643111100 100011 3333 4665 46699999999999999966543 433
Q ss_pred CccccccCC-CCCCCcccccCCC------CCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 415 NVLDGLNMF-DGTDGHYFHSGSR------GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 415 ~~~~~~~~f-dg~~~~yf~~~~~------g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
++. .| .+....||-.... +..|......+|+.||++++...+.++.-+.+.|||||-+|...
T Consensus 100 ~~~----~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 100 DHP----RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CCH----HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 321 01 1112234432211 11222233569999999999999999666666999999999753
No 84
>smart00632 Aamy_C Aamy_C domain.
Probab=95.90 E-value=0.039 Score=48.34 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=42.4
Q ss_pred CCCcEEEEEc-CeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcccccccCccCCCCeEEEEEE
Q 003226 739 QGDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYA 817 (837)
Q Consensus 739 ~~~~VlaF~R-~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~L 817 (837)
.++++|+|.| +..+|++|.+.......+...+| +|.|+++|..-. .|. .+.. ...+.+.++|
T Consensus 6 ~~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~lp-~G~Y~d~l~g~~---~g~-------~v~V------~~~G~~~~~l 68 (81)
T smart00632 6 NGDNQIAFERGSKGFVAINRSDSDLTITLQTSLP-AGTYCDVISGLC---TGK-------SVTV------GSNGIATFTL 68 (81)
T ss_pred CCCeEEEEECCCeEEEEEECCCCceEEEEeecCC-CcceEEEecCcc---cCC-------EEEE------CCCCEEEEEE
Confidence 3455999999 57889999885322222333554 599999987410 111 1111 0123588999
Q ss_pred CCce-EEEEE
Q 003226 818 PSRT-AVVYA 826 (837)
Q Consensus 818 p~~s-~~Vl~ 826 (837)
||++ ++||.
T Consensus 69 ~~~~~v~i~~ 78 (81)
T smart00632 69 PAGGAVAIHV 78 (81)
T ss_pred CCCCeEEEEE
Confidence 9999 55544
No 85
>PRK10426 alpha-glucosidase; Provisional
Probab=95.89 E-value=0.084 Score=63.88 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=83.2
Q ss_pred HhhHhhhhhHHHHcC--CCEEEECCccccCCCCCCCCccc-ccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 337 ANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVT-NFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 337 ~~~~~~~LdyLk~LG--vt~I~L~Pi~e~~~~~s~GY~~~-~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
..+. +.+..+++.| +++|||- -+....+.++|...- || ..+ .+|- +.++||+++|++|++|++-+-+- +
T Consensus 221 ~~v~-~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~-~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 221 EVVQ-KKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNW-KWDSERYP---QLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHH-HHHHHHHHcCCCeeEEEEe-cccccccccccccccccc-eEChhhCC---CHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 4455 6888899988 5889985 232111223443221 22 222 3453 46789999999999999987653 3
Q ss_pred CCCccccccCC-CCCCCcccccCCCCC-----cccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccc
Q 003226 413 SNNVLDGLNMF-DGTDGHYFHSGSRGY-----HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 413 s~~~~~~~~~f-dg~~~~yf~~~~~g~-----~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
..+.. .| ++....||-....|. .|.+....+|+.||++|+...+.++..+.+.|||||=.|.-..+
T Consensus 294 ~~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 294 ASDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred CCCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCC
Confidence 22210 11 112223444333221 12233457999999999999999876666699999999986643
No 86
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=95.88 E-value=0.067 Score=62.26 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccCCC--CCCccccc-----cCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHH--
Q 003226 387 DDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRF-- 457 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~NH~--s~~~~~~~-----~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~-- 457 (837)
+.+.++=.-|+++||.+|.|+.+.=. |.+..... +.--|.+|.+|.... ..|+.+..|+..-.-+.|
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~~G----Q~Wg~p~yn~~~l~~~~y~w 285 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNAQG----QDWGLPPYNPEALKKDGYDW 285 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCcccccc----cccCCCCCCHHHHHHcccHH
Confidence 55666666778899999999986533 22221000 111255566665322 357777655542221111
Q ss_pred HHHHHHHHHHHcCCCeEEecccccc
Q 003226 458 LLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 458 l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
.++-++.=++ .+|+.|+|.+..+
T Consensus 286 wierlr~~~~--~~~~lRIDHf~Gl 308 (520)
T COG1640 286 WIERLRANLK--LYGILRIDHFRGL 308 (520)
T ss_pred HHHHHHHHHH--hcCeeeeeeecch
Confidence 2233333333 6999999987544
No 87
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.69 E-value=0.033 Score=62.27 Aligned_cols=129 Identities=20% Similarity=0.295 Sum_probs=79.2
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCCC-CCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-..+. +.++.+++.|| ++|||-.-+.. +|. + |.-++ +|-. .++||+.+|++|++|++-+.+ |
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~~------~~~--~-f~~d~~~fPd---p~~m~~~l~~~g~~~~~~~~P-~ 87 (339)
T cd06604 22 PEEEVR-EIADEFRERDIPCDAIYLDIDYMD------GYR--V-FTWDKERFPD---PKELIKELHEQGFKVVTIIDP-G 87 (339)
T ss_pred CHHHHH-HHHHHHHHhCCCcceEEECchhhC------CCC--c-eeeccccCCC---HHHHHHHHHHCCCEEEEEEeC-c
Confidence 334555 68888888886 67877543321 121 1 33333 6654 479999999999999987654 3
Q ss_pred CCCCccccccCC-CCCCCcccccCCCCC---cccC--CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 412 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 412 ~s~~~~~~~~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
+..+. ....| .+....||-....+. ...| ....+|+.||++++...+.++..++ .|||||-+|...
T Consensus 88 v~~~~--~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 88 VKVDP--GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred eeCCC--CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCceEeecCCC
Confidence 32211 00011 111223443332221 1122 2345899999999999999998876 899999999764
No 88
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=95.68 E-value=0.022 Score=63.77 Aligned_cols=132 Identities=13% Similarity=0.144 Sum_probs=77.9
Q ss_pred HhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCC
Q 003226 337 ANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
.++. +.+..+++.|+ +.|+|=.=+. ..+.+ |..+ .+|-.+.. ++||+++|++|++|++-+.+ |+.
T Consensus 24 ~~v~-~~~~~~r~~~iP~d~i~lD~~~~-~~~~~--------f~~d~~~FPdp~~-~~mi~~L~~~G~k~~~~i~P-~v~ 91 (339)
T cd06602 24 DEVK-EVVENMRAAGIPLDVQWNDIDYM-DRRRD--------FTLDPVRFPGLKM-PEFVDELHANGQHYVPILDP-AIS 91 (339)
T ss_pred HHHH-HHHHHHHHhCCCcceEEECcccc-cCccc--------eecccccCCCccH-HHHHHHHHHCCCEEEEEEeC-ccc
Confidence 4455 57777887776 6677632211 11111 2222 24443321 89999999999999997654 333
Q ss_pred CCc-cccccCC-CCCCCcccccCCCCCc---ccC--CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 414 NNV-LDGLNMF-DGTDGHYFHSGSRGYH---WMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 414 ~~~-~~~~~~f-dg~~~~yf~~~~~g~~---~~w--~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
.+. ......| ++....||-....|.. ..| ....+|+.||++++...+.++.+++++|||||=+|...
T Consensus 92 ~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 92 ANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred cCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 221 0000011 1222234433322211 122 23458999999999999999999988999999999754
No 89
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=95.47 E-value=0.17 Score=66.55 Aligned_cols=187 Identities=17% Similarity=0.179 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHcC--CEEEEeeccC--CCCCCcccc-----ccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHH--H
Q 003226 387 DDLKSLIDKAHELG--LLVLMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--L 455 (837)
Q Consensus 387 edfk~LV~~aH~~G--I~VIlDvV~N--H~s~~~~~~-----~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV--r 455 (837)
++++++-+.|+++| |++|-|+.+- +-|.+.... +..--|.+|.+|... | ..|+.|.+|+..-+- -
T Consensus 386 ~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~~~aGAPPD~Fs~~--G--Q~WG~P~y~p~~L~~~gY 461 (1693)
T PRK14507 386 LQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANGASIGAPPDELNPK--G--QDWGLPPFDPLELERDGY 461 (1693)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcCCccCCCCCcCccc--c--ccCCCcCcCHHHHHhcCh
Confidence 67788888999999 7889999763 223222111 112246777788653 3 248888877643211 1
Q ss_pred HHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEeccC
Q 003226 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (837)
Q Consensus 456 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~~ 535 (837)
+..++-++.-++ ++|++|+|.+..+... .-++.+- ....|.....+..+++..+. +.+..+++.+|||+.+
T Consensus 462 ~ww~~rlr~~m~--~~g~lRIDH~lGl~Rl-W~IP~g~----ta~~G~yv~yP~~~ll~~la--LEs~r~~~~VIgEDLG 532 (1693)
T PRK14507 462 APFRALLRANMR--HAGALRIDHVMQLMRL-FWIPLGR----SAREGAYVAYPFEPMLAVLA--LESHRNRCLVIGEDLG 532 (1693)
T ss_pred HHHHHHHHHHHH--HCCEEEeccHHhhhHh-cccCCCC----CCCCCeEEECCHHHHHHHHH--HHHhcCCCeEEEecCC
Confidence 335556666666 6899999987543210 0111110 11112223333334444332 2344567899999986
Q ss_pred CCCCceecccc-CCc-ccchhcchhhHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCcccccc
Q 003226 536 GMPTFCIPVQD-GGV-GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALV 604 (837)
Q Consensus 536 ~~p~~~~~~~~-ggl-gFd~~~~~~~~d~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~v~y~esHD~~r~ 604 (837)
--|...+.... -|+ |+. +. ++..... + .-.....|+.++|.|+.+||+.++
T Consensus 533 tVp~~Vr~~l~~~gi~Gm~------VL-----~Fe~~~~----~---~~~~P~~y~~~sva~tgTHD~pTl 585 (1693)
T PRK14507 533 TVPEGFRDALARAGVLSYR------IL-----YFEREDG----G---AFKPPAAYPADALAAVTTHDLPTL 585 (1693)
T ss_pred CCCHHHHHHHHHcCCCCce------EE-----EeeecCC----C---CCCCcccCcCCeEEECCCCCCHhH
Confidence 54443322221 111 110 00 0000000 0 011223567889999999999865
No 90
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.44 E-value=0.022 Score=66.07 Aligned_cols=131 Identities=21% Similarity=0.376 Sum_probs=75.7
Q ss_pred HHhhHhhhhhHHHHcCCC--EEEECCccccCCCCCCCCcccccccCCC-CCCCHHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 336 YANFRDDVLPRIKRLGYN--AVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt--~I~L~Pi~e~~~~~s~GY~~~~y~avd~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
-..+. +.++.+++.|+- +|+|-.-+.. +|. + |..++ +|- ++++|++.+|++|++|++-+.+ ++
T Consensus 42 ~~~v~-~~i~~~~~~~iP~d~~~iD~~~~~------~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v 107 (441)
T PF01055_consen 42 QDEVR-EVIDRYRSNGIPLDVIWIDDDYQD------GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FV 107 (441)
T ss_dssp HHHHH-HHHHHHHHTT--EEEEEE-GGGSB------TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EE
T ss_pred HHHHH-HHHHHHHHcCCCccceeccccccc------ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-cc
Confidence 34555 688888888874 4544332221 111 1 23332 443 7889999999999999999887 34
Q ss_pred CCCccccccCCC-CCCCcccccCCCC---CcccCC--CcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEeccccc
Q 003226 413 SNNVLDGLNMFD-GTDGHYFHSGSRG---YHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (837)
Q Consensus 413 s~~~~~~~~~fd-g~~~~yf~~~~~g---~~~~w~--~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~ 481 (837)
..... ....|+ +....|+-....+ ....|. ...+|+.||++++.+.+.++..++.+|||||-+|....
T Consensus 108 ~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 181 (441)
T PF01055_consen 108 SNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEP 181 (441)
T ss_dssp ETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTT
T ss_pred CCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCc
Confidence 33321 000010 0111233333322 111244 46799999999999999999999988999999998543
No 91
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=95.08 E-value=0.034 Score=55.34 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCc-----EEEEeec----CCCcEEEEEc--------------CeEEEEEECCC
Q 003226 709 GMQEFDRAMQHLEEKYGFMTSEH-----QYVSRKD----QGDRVIVFER--------------GNLVFVFNFHW 759 (837)
Q Consensus 709 ~l~~f~~~Li~LRk~~~~L~~g~-----~~i~~~~----~~~~VlaF~R--------------~~llvv~Nf~~ 759 (837)
...+++++|++||+++|+++-+. +-+.+.+ ...+||++.- +.++||||-+|
T Consensus 42 ~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 42 AASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 56899999999999999887442 1122222 2356888875 24999999996
No 92
>PRK10658 putative alpha-glucosidase; Provisional
Probab=95.03 E-value=0.076 Score=64.51 Aligned_cols=128 Identities=11% Similarity=0.240 Sum_probs=80.3
Q ss_pred hhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCC
Q 003226 338 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 338 ~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
.+. +.++.+++.|+ ++|+|-..+-. +|+-.+ |.-| .+|-. .+.||+++|++|++|++-+.+ +...
T Consensus 284 ~v~-~~~~~~r~~~iP~d~i~lD~~w~~------~~~~~~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~i~P-~i~~ 351 (665)
T PRK10658 284 TVN-SFIDGMAERDLPLHVFHFDCFWMK------EFQWCD-FEWDPRTFPD---PEGMLKRLKAKGLKICVWINP-YIAQ 351 (665)
T ss_pred HHH-HHHHHHHHcCCCceEEEEchhhhc------CCceee-eEEChhhCCC---HHHHHHHHHHCCCEEEEeccC-CcCC
Confidence 344 46677787776 45665432211 121123 2222 35544 467999999999999998665 3333
Q ss_pred CccccccCC-CCCCCcccccCCCCCccc---C--CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccc
Q 003226 415 NVLDGLNMF-DGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 415 ~~~~~~~~f-dg~~~~yf~~~~~g~~~~---w--~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
++. .| .+....||-...+|..+. | +...+|+.||++|+...+.++.+++ .|||||-.|....+
T Consensus 352 ~s~----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 352 KSP----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGERI 420 (665)
T ss_pred Cch----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCcee
Confidence 221 11 122334555444443322 3 3467999999999999999999888 89999999976543
No 93
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=95.00 E-value=0.11 Score=57.36 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=59.9
Q ss_pred CCcccC-CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHH
Q 003226 437 GYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLML 515 (837)
Q Consensus 437 g~~~~w-~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~ 515 (837)
+....| ++..+|+.+++.+.+|++-+...++ .|+|||=+|.+....+.... +..+ .....+-+.|++.
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy~~~~~~---------~~~~-~~~~~~m~~~i~~ 195 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAFEYWAEN---------GDNR-PGAAAEMIAFVCE 195 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhhhhhccc---------CCcc-hhhHHHHHHHHHH
Confidence 345568 7788999999999999998877766 79999999998765321100 0000 0011233578999
Q ss_pred HHHhhhccCCCeEEEE
Q 003226 516 VNDMIHGLYPEAVSIG 531 (837)
Q Consensus 516 ~~~~v~~~~p~~~~ia 531 (837)
+.+.+|+.+|++++|.
T Consensus 196 Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 196 IAAYARAQNPQFVIIP 211 (315)
T ss_pred HHHHHHHHCCCEEEEe
Confidence 9999999999999884
No 94
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.30 E-value=0.077 Score=58.83 Aligned_cols=131 Identities=10% Similarity=0.110 Sum_probs=76.7
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 336 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
-..+. +.++.+++.|+ ++|+|=.=+-........|. + |..+ .+|-.| ++||+.+|++|++|++-+.+ ++
T Consensus 23 ~~~v~-~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPdp---~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 23 WQEVD-DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPDP---AGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred HHHHH-HHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCCH---HHHHHHHHHcCCcEEEEEcC-cc
Confidence 34555 57788888775 66766432210000000011 2 3332 466554 68999999999999998754 33
Q ss_pred CCCccccccCC-CCCCCcc-cccCCCC-----CcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEeccc
Q 003226 413 SNNVLDGLNMF-DGTDGHY-FHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 413 s~~~~~~~~~f-dg~~~~y-f~~~~~g-----~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
..++. .| .+....| +.....+ ..|......+|+.||++++...+.++..++ .|||||-+|.-
T Consensus 95 ~~~~~----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~ 163 (317)
T cd06598 95 LKNSK----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID-QGVTGWWGDLG 163 (317)
T ss_pred cCCch----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh-CCccEEEecCC
Confidence 32221 01 1111223 2222111 122224467899999999999999988855 89999999975
No 95
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.96 E-value=0.38 Score=53.50 Aligned_cols=147 Identities=17% Similarity=0.136 Sum_probs=78.3
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccc
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL 420 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~ 420 (837)
.+.+..||+.|+|+|-|=- +-.|+. .-+-+.+...+|.++|+++||+|+||+=++.+-.+.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~--------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP---- 87 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD--------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP---- 87 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT--------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT----
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc--------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC----
Confidence 3589999999999997743 333431 345678999999999999999999999776653321
Q ss_pred cCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccc
Q 003226 421 NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEY 500 (837)
Q Consensus 421 ~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~ 500 (837)
| .....-.|....++--...|.+|-.++|....+ .|+. .|.|.- .. .+..++-..
T Consensus 88 ----g---------~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~-~G~~---pd~VQV-GN---Ein~Gmlwp---- 142 (332)
T PF07745_consen 88 ----G---------KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA-AGVT---PDMVQV-GN---EINNGMLWP---- 142 (332)
T ss_dssp ----T---------B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH-TT-----ESEEEE-SS---SGGGESTBT----
T ss_pred ----C---------CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCC---ccEEEe-Cc---cccccccCc----
Confidence 0 000112344333333335566777777777655 4554 665531 10 111111110
Q ss_pred cCcccCchH-HHHHHHHHHhhhccCCCeEEEE
Q 003226 501 FGFATDVDA-VVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 501 ~g~~~d~~a-~~fl~~~~~~v~~~~p~~~~ia 531 (837)
.|...+.+. ..+++...++|++..|++.++-
T Consensus 143 ~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 143 DGKPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp TTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 011223333 2567777788998888765443
No 96
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.65 E-value=0.22 Score=61.30 Aligned_cols=86 Identities=20% Similarity=0.353 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCEEEEeeccCCCCCCccccccCC-CCCCCcccccCCCCCccc---C--CCcCCCCCCHHHHHHHHH-HHH
Q 003226 391 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLS-NAR 463 (837)
Q Consensus 391 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f-dg~~~~yf~~~~~g~~~~---w--~~~~ln~~~~eVr~~l~~-~l~ 463 (837)
+||+.+|++||++|.=+.|.=..+.. .| ......||..+..|..+. | ...-+|+.||++|+...+ ...
T Consensus 325 ~mi~~l~~~Gikl~~~i~P~i~~d~~-----~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~ 399 (772)
T COG1501 325 QMIAELHEKGIKLIVIINPYIKQDSP-----LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKK 399 (772)
T ss_pred HHHHHHHhcCceEEEEeccccccCCc-----hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHh
Confidence 99999999999999988774333321 11 122334666655543322 3 357799999999999995 445
Q ss_pred HHHHHcCCCeEEecccccc
Q 003226 464 WWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 464 ~Wl~e~gvDGfR~D~v~~m 482 (837)
.+++ +|||||=.|.-.-.
T Consensus 400 ~l~d-~Gv~g~W~D~nEp~ 417 (772)
T COG1501 400 NLLD-LGVDGFWNDMNEPE 417 (772)
T ss_pred HHHh-cCccEEEccCCCCc
Confidence 5666 99999999987544
No 97
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.31 E-value=0.17 Score=55.37 Aligned_cols=129 Identities=15% Similarity=0.152 Sum_probs=71.1
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCccccC----CCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEee
Q 003226 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHS----YYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDI 407 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~----~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDv 407 (837)
+-.++. +.+..+++.|| ++|+|=-=+... .+. -+|. -|..+ .+|- +.++||+++|++|++||+-+
T Consensus 23 s~~ev~-~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~-~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYL-ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYG-SGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEeccccccccccccc-CCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEe
Confidence 344555 57777777765 667662211100 000 0111 13333 3664 45899999999999999998
Q ss_pred ccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEeccc
Q 003226 408 VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 408 V~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
.+.............+.... .... ..+ +...+|+.||+.++...+.+..-+.++|||||=.|.-
T Consensus 95 ~P~~~~~~~~~~y~~~~~~~--~~~~-~~~-----~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 95 HPADGIRAHEDQYPEMAKAL--GVDP-ATE-----GPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred CCCcccCCCcHHHHHHHHhc--CCCc-ccC-----CeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCC
Confidence 77532111100000010000 0000 000 1136799999999977777766666699999999953
No 98
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=93.15 E-value=0.38 Score=51.43 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHH
Q 003226 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 464 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~ 464 (837)
+.+++++.|..+|++|+||++=+--+|.+.. | ....+++-++.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-------~-----------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-------F-----------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-------c-----------------------cccCCHHHHHHHHHHHHH
Confidence 4689999999999999999998765544321 0 011234556777778888
Q ss_pred HHHHcCCCeEEecc
Q 003226 465 WLEEYKFDGFRFDG 478 (837)
Q Consensus 465 Wl~e~gvDGfR~D~ 478 (837)
+++.||+||+=+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 88889999999994
No 99
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=92.84 E-value=2.6 Score=47.35 Aligned_cols=176 Identities=14% Similarity=0.087 Sum_probs=96.8
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCC-------CCCCCHHHHHHHHHHHHHcCCEEEEee-c
Q 003226 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-------SRCGTPDDLKSLIDKAHELGLLVLMDI-V 408 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd-------~~~Gt~edfk~LV~~aH~~GI~VIlDv-V 408 (837)
..|. ..|+.++.+.+|.++|== ....+|.+.+..|=.+. ..|=|.+|+|+||+-|.++||.||-.+ +
T Consensus 18 ~~ik-~~Id~ma~~KlN~lh~Hl----tDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~ 92 (348)
T cd06562 18 DSIK-RTIDAMAYNKLNVLHWHI----TDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDT 92 (348)
T ss_pred HHHH-HHHHHHHHhCCcEEEEeE----EcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccC
Confidence 4444 578889999999888620 01112333222221111 122289999999999999999999998 5
Q ss_pred cCCCCCCc--cccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccc
Q 003226 409 HSHASNNV--LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 486 (837)
Q Consensus 409 ~NH~s~~~--~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~ 486 (837)
+.|+..-. ...+.. .+ ...+.... ..-....||..+|++.+++.+.+.-.++-|... .=|+
T Consensus 93 PGH~~a~~~~~p~l~~-~~--~~~~~~~~----~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~------~iHi---- 155 (348)
T cd06562 93 PGHTGSWGQGYPELLT-GC--YAVWRKYC----PEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDK------YFHL---- 155 (348)
T ss_pred chhhHHHHHhChhhhC-CC--Cccccccc----cCCCCccccCCChhHHHHHHHHHHHHHHhcCCc------ceEe----
Confidence 88885421 001110 00 00010000 000123589999999999999999999855411 1122
Q ss_pred cCccccccCCccc---------ccCcccCchHH--HHHHHHHHhhhccCCCeEEEEeccCC
Q 003226 487 HGLQVAFTGNYSE---------YFGFATDVDAV--VYLMLVNDMIHGLYPEAVSIGEDVSG 536 (837)
Q Consensus 487 ~g~~~~f~~~~~~---------~~g~~~d~~a~--~fl~~~~~~v~~~~p~~~~iaE~~~~ 536 (837)
|-.......|.. ..| ..+...+ .|++.+.+.+++.....++-.|...+
T Consensus 156 -GgDE~~~~~w~~~p~~~~~m~~~g-~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~ 214 (348)
T cd06562 156 -GGDEVNFNCWNSNPEIQKFMKKNN-GTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDN 214 (348)
T ss_pred -ecCCCCCCcccCCHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccC
Confidence 221111111210 001 0112222 48888999998887666666666543
No 100
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=92.27 E-value=0.67 Score=52.30 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHc
Q 003226 390 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 469 (837)
Q Consensus 390 k~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~ 469 (837)
++|+..||++|++|++.. + + + .-...+++.|+.+++++.-+++++
T Consensus 67 ~~~~~~A~~~~v~v~~~~-------~-------~----~-----------------~~~l~~~~~R~~fi~siv~~~~~~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG-------D-------V----P-----------------LEQISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHcCCEEEEEC-------c-------c----C-----------------HHHcCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999741 0 0 0 002457889998999999999999
Q ss_pred CCCeEEecccccccccccCccccccCCcccccCcccCchH-HHHHHHHHHhhhccCCCe
Q 003226 470 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEA 527 (837)
Q Consensus 470 gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a-~~fl~~~~~~v~~~~p~~ 527 (837)
|+||+-+|-=.-. . ....+.+. ..|++++++.+++..++.
T Consensus 112 gfDGIdIDwE~p~-------------~-----~~~~d~~~~t~llkelr~~l~~~~~~~ 152 (358)
T cd02875 112 FMDGINIDIEQPI-------------T-----KGSPEYYALTELVKETTKAFKKENPGY 152 (358)
T ss_pred CCCeEEEcccCCC-------------C-----CCcchHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999952100 0 00112233 368999999998765543
No 101
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=91.97 E-value=0.39 Score=53.55 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=69.5
Q ss_pred HhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCC
Q 003226 337 ANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
..+. +.+..+++.++ ++|||=.=+. -+|. .|..+ .+|-.+ ++||+++|++|++||+-+.+- ..
T Consensus 24 ~ev~-~v~~~~r~~~IP~D~i~lDidy~------~~~~---~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i~ 89 (332)
T cd06601 24 SDLE-EVVEGYRDNNIPLDGLHVDVDFQ------DNYR---TFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-IS 89 (332)
T ss_pred HHHH-HHHHHHHHcCCCCceEEEcCchh------cCCC---ceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-ee
Confidence 3444 46677776665 6777654221 1221 24444 367555 689999999999999987642 11
Q ss_pred CCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEeccc
Q 003226 414 NNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 414 ~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
.| ..+.+.+.-.|+.||++|++..+..+.+.+ .|||||=+|.-
T Consensus 90 ----------~g------------~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~~~W~Dmn 132 (332)
T cd06601 90 ----------YG------------GGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLEFVWQDMT 132 (332)
T ss_pred ----------cC------------ccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCceeecCCC
Confidence 01 011122335789999999998888888887 79999999975
No 102
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.84 E-value=2.2 Score=47.53 Aligned_cols=164 Identities=14% Similarity=0.227 Sum_probs=92.5
Q ss_pred HHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCccccc--------------------c--cCCCCCCCHHHHHHHH
Q 003226 336 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNF--------------------F--APSSRCGTPDDLKSLI 393 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y--------------------~--avd~~~Gt~edfk~LV 393 (837)
...|. +.|+.+..+++|.++|== .+ +|++....+ . .....+=|.+|+|+||
T Consensus 16 ~~~ik-~~id~ma~~K~N~lhlHl-----tD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 88 (326)
T cd06564 16 MDFLK-DIIKTMSWYKMNDLQLHL-----ND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELI 88 (326)
T ss_pred HHHHH-HHHHHHHHcCCceEEEee-----cC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHH
Confidence 34444 688999999999998710 00 122111111 0 1112233899999999
Q ss_pred HHHHHcCCEEEEee-ccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 003226 394 DKAHELGLLVLMDI-VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFD 472 (837)
Q Consensus 394 ~~aH~~GI~VIlDv-V~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvD 472 (837)
+-|.++||.||-.+ ++.|+..- +..+. .+..... ...-....||..+|++.+++.+.+.-.++-|..
T Consensus 89 ~yA~~rgI~vIPEID~PGH~~a~----~~~~p-----el~~~~~--~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~- 156 (326)
T cd06564 89 AYAKDRGVNIIPEIDSPGHSLAF----TKAMP-----ELGLKNP--FSKYDKDTLDISNPEAVKFVKALFDEYLDGFNP- 156 (326)
T ss_pred HHHHHcCCeEeccCCCcHHHHHH----HHhhH-----HhcCCCc--ccCCCcccccCCCHHHHHHHHHHHHHHHHhcCC-
Confidence 99999999999888 57887431 11100 0000000 001122468999999999999999999985541
Q ss_pred eEEecccccccccccCccccccCCcccccCcccCch-HHHHHHHHHHhhhccCCCeEEEEecc
Q 003226 473 GFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAVSIGEDV 534 (837)
Q Consensus 473 GfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~fl~~~~~~v~~~~p~~~~iaE~~ 534 (837)
..+ .=|| |-. |........+ -..|++.+.+.+++.....++-.|..
T Consensus 157 --~~~-~~Hi-----GgD--------E~~~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~ 203 (326)
T cd06564 157 --KSD-TVHI-----GAD--------EYAGDAGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGI 203 (326)
T ss_pred --CCC-EEEe-----ccc--------cccccCccHHHHHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 011 1122 211 1111111111 23689999999988765555555443
No 103
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=91.04 E-value=0.34 Score=54.27 Aligned_cols=129 Identities=14% Similarity=0.138 Sum_probs=77.9
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCCC-CCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-.++. +.+..+++.|+ ++|+|=.=+. .+|. .|..++ +|- +.+.||+++|++|++|++-+.+--
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD~~~~------~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v 88 (339)
T cd06603 22 DQEDVK-EVDAGFDEHDIPYDVIWLDIEHT------DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHI 88 (339)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEChHHh------CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCce
Confidence 344555 57777887776 5666642111 1222 134444 665 458899999999999999976533
Q ss_pred CCCCccccccCC-CCCCCcccccCCCCC---cccC--CCcCCCCCCHHHHHHHHHHHHHHHH--HcCCCeEEeccc
Q 003226 412 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLE--EYKFDGFRFDGV 479 (837)
Q Consensus 412 ~s~~~~~~~~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~~eVr~~l~~~l~~Wl~--e~gvDGfR~D~v 479 (837)
..+. ....| .+....||.....+. ...| ....+|+.||++++...+.++..+. ..++|||=+|..
T Consensus 89 -~~~~--~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 89 -KRDD--GYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred -ecCC--CCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 2221 00001 112223443333221 1123 2357899999999999999998886 368999999964
No 104
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=90.41 E-value=1.4 Score=53.71 Aligned_cols=132 Identities=20% Similarity=0.306 Sum_probs=80.0
Q ss_pred CCHHhhHhhhhhHHHHcCCC--EEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 334 NTYANFRDDVLPRIKRLGYN--AVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 334 G~~~~~~~~~LdyLk~LGvt--~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+++..+. +...+.+++|+. ++|.-=-+.. + -.||.-=...|++ |+.+|+.+|++|+|+|+=+-++-
T Consensus 308 ~nls~~~-dvv~~~~~agiPld~~~~DiDyMd------~--ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVR-DVVENYRAAGIPLDVIVIDIDYMD------G--YKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHH-HHHHHHHHcCCCcceeeeehhhhh------c--ccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5667777 689999999986 5543211111 1 1333332346666 99999999999999987665332
Q ss_pred CCCCccccccCCC-CCCCcccccCCCCCc------ccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 412 ASNNVLDGLNMFD-GTDGHYFHSGSRGYH------WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 412 ~s~~~~~~~~~fd-g~~~~yf~~~~~g~~------~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
..... ...|+ |.....+-....|.. |.-...-.|+.||.+.....+.++..-++.++|||-+|+-.
T Consensus 376 s~~~~---y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 376 STNSS---YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred ccCcc---chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCC
Confidence 21111 01111 111112211111221 11123568999999999999998888888999999999843
No 105
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=90.22 E-value=0.74 Score=46.12 Aligned_cols=65 Identities=15% Similarity=0.311 Sum_probs=45.7
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+.+.+++++|+++|-|. ...+...-+.++.++...-..+..+-+..+.++|.+.||+|++-+-++
T Consensus 24 ~~~~~m~~~GidtlIlq----~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQ----WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCcEEEEE----EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 68999999999999766 222222333444442222223567889999999999999999987654
No 106
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=89.89 E-value=2.9 Score=46.08 Aligned_cols=166 Identities=15% Similarity=0.092 Sum_probs=94.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccC-----------CCCCCCHHHHHHHHHHHHHcCCEE
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAP-----------SSRCGTPDDLKSLIDKAHELGLLV 403 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~av-----------d~~~Gt~edfk~LV~~aH~~GI~V 403 (837)
+...|. +.|+.+..+++|.++|==. ...+|.+....|=.+ ...+=|.+|+++||+-|.++||.|
T Consensus 14 ~~~~lk-~~id~ma~~K~N~lhlHl~----D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~v 88 (303)
T cd02742 14 SVESIK-RTIDVLARYKINTFHWHLT----DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEeee----cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEE
Confidence 344555 6889999999999876311 011222222221111 112337999999999999999999
Q ss_pred EEee-ccCCCCCCccccccCCCCC-CCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEeccccc
Q 003226 404 LMDI-VHSHASNNVLDGLNMFDGT-DGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (837)
Q Consensus 404 IlDv-V~NH~s~~~~~~~~~fdg~-~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~ 481 (837)
|-.+ ++.|+..-- ..+... ..++- +..+.-....||..+|++.+++.+.+.-+++-|. +-.=|
T Consensus 89 iPEiD~PGH~~a~~----~~~p~l~~~~~~-----~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~------~~~iH 153 (303)
T cd02742 89 IPEIDMPGHSTAFV----KSFPKLLTECYA-----GLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFP------DRYLH 153 (303)
T ss_pred EEeccchHHHHHHH----HhCHHhccCccc-----cCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCC------CCeEE
Confidence 9998 588885311 111000 00110 0000011246899999999999999999998431 11112
Q ss_pred ccccccCccccccCCcccccCcccCch--HHHHHHHHHHhhhccCCCeEEEEecc
Q 003226 482 MMYTHHGLQVAFTGNYSEYFGFATDVD--AVVYLMLVNDMIHGLYPEAVSIGEDV 534 (837)
Q Consensus 482 m~~~~~g~~~~f~~~~~~~~g~~~d~~--a~~fl~~~~~~v~~~~p~~~~iaE~~ 534 (837)
+ |-. |.+.. .+.. -..|++.+.+.+++.....++-.|..
T Consensus 154 i-----GgD--------E~~~~-~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~ 194 (303)
T cd02742 154 I-----GGD--------EAHFK-QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGF 194 (303)
T ss_pred e-----cce--------ecCCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 2 211 11111 1111 23688899999988765555555543
No 107
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=89.70 E-value=14 Score=45.45 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=47.4
Q ss_pred CC-CcCCCCCC-----HHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHH
Q 003226 442 WD-SRLFNYGS-----WEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLML 515 (837)
Q Consensus 442 w~-~~~ln~~~-----~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~ 515 (837)
|+ +..|+|+| |-++++|......=.. =+||+|+|..++.. +..-.-
T Consensus 495 WGDsVKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsTP--------------------------lHVaEy 546 (1521)
T KOG3625|consen 495 WGDSVKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHSTP--------------------------LHVAEY 546 (1521)
T ss_pred ecceeeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCCc--------------------------hhHHHH
Confidence 54 46789975 5677777766555444 58999999986542 112233
Q ss_pred HHHhhhccCCCeEEEEeccCCCC
Q 003226 516 VNDMIHGLYPEAVSIGEDVSGMP 538 (837)
Q Consensus 516 ~~~~v~~~~p~~~~iaE~~~~~p 538 (837)
+-++.++.+|+.+++||-+++..
T Consensus 547 lLd~ARk~nPnlYVvAELFtgSe 569 (1521)
T KOG3625|consen 547 LLDAARKLNPNLYVVAELFTGSE 569 (1521)
T ss_pred HHHHHHhcCCCeEEEeeeccCCc
Confidence 44566788999999999987643
No 108
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=89.67 E-value=3 Score=44.60 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHH
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWW 465 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~W 465 (837)
+.++..++++||++|++|++=|- ++.. .. |. --..+++.|+.+++++.-+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~--------------~~-~~--------------~~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSP--------------PE-FT--------------AALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCC--------------Cc-ch--------------hhhcCHHHHHHHHHHHHHH
Confidence 46789999999999999998542 1110 00 00 0235688899999999999
Q ss_pred HHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhcc
Q 003226 466 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 523 (837)
Q Consensus 466 l~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~ 523 (837)
+++|++||+=+|--.- +. ....-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~--------------------~~-~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGP--------------------DV-TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeecc--------------------Cc-cHhHHHHHHHHHHHHHhhc
Confidence 9999999999995210 00 0012246899999998764
No 109
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=89.65 E-value=5.9 Score=44.20 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=93.8
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCC------------CCCCCHHHHHHHHHHHHHcCCE
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS------------SRCGTPDDLKSLIDKAHELGLL 402 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd------------~~~Gt~edfk~LV~~aH~~GI~ 402 (837)
+...|. +.||.++..++|.++|=-.= ..+|......|=.+. ..|=|.+|+++||+-|.++||.
T Consensus 16 ~~~~lk-~~id~ma~~KlN~lhlHLtD----~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 16 TVAEVK-RYIDLLALYKLNVLHLHLTD----DQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEEeec----CCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 334555 68899999999998873321 112333222221111 1233799999999999999999
Q ss_pred EEEee-ccCCCCCCcc--ccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEeccc
Q 003226 403 VLMDI-VHSHASNNVL--DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 403 VIlDv-V~NH~s~~~~--~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
||-.+ ++.|+..--. ..+.. .+.....+. ........||..+|++.+++.+.+.-.++-|- + . .
T Consensus 91 vIPEiD~PGH~~a~~~~~p~l~~-~~~~~~~~~------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~--~---~-~ 157 (329)
T cd06568 91 VVPEIDMPGHTNAALAAYPELNC-DGKAKPLYT------GIEVGFSSLDVDKPTTYEFVDDVFRELAALTP--G---P-Y 157 (329)
T ss_pred EEEecCCcHHHHHHHHhChhhcc-CCCCCcccc------ccCCCCcccCCCCHHHHHHHHHHHHHHHHhCC--C---C-e
Confidence 99998 4788753110 01111 111111110 01112246899999999999999999887431 1 1 1
Q ss_pred ccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccCCCeEEEEec
Q 003226 480 TSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGED 533 (837)
Q Consensus 480 ~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~iaE~ 533 (837)
=|+ |-. |..... ...-..|++.+.+.+++.....++-.|.
T Consensus 158 iHi-----GgD--------E~~~~~-~~~~~~f~~~~~~~v~~~Gk~~~~W~d~ 197 (329)
T cd06568 158 IHI-----GGD--------EAHSTP-HDDYAYFVNRVRAIVAKYGKTPVGWQEI 197 (329)
T ss_pred EEE-----ecc--------cCCCCc-hHHHHHHHHHHHHHHHHCCCeEEEECcc
Confidence 122 211 111111 1112368899999998876555544443
No 110
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=89.60 E-value=0.76 Score=57.69 Aligned_cols=128 Identities=13% Similarity=0.219 Sum_probs=77.4
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCCC-CCCCHHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 336 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
-..+. +.+..+++.|+ ++|||-- .+. .||.+ |..++ +|-. .++||+.+|++|+++|+=+.+ ++
T Consensus 200 q~eV~-eva~~fre~~IP~DvIwlDi----dYm--~g~~~---FTwD~~rFPd---P~~mv~~Lh~~G~kvv~iidP-gI 265 (978)
T PLN02763 200 AKRVA-EIARTFREKKIPCDVVWMDI----DYM--DGFRC---FTFDKERFPD---PKGLADDLHSIGFKAIWMLDP-GI 265 (978)
T ss_pred HHHHH-HHHHHHHHcCCCceEEEEeh----hhh--cCCCc---eeECcccCCC---HHHHHHHHHHCCCEEEEEEcC-CC
Confidence 34555 57778888776 6677642 111 13332 44443 6754 479999999999999875543 33
Q ss_pred CCCccccccCC-CCCCCcccccCCCCC---cccCC--CcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 413 SNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 413 s~~~~~~~~~f-dg~~~~yf~~~~~g~---~~~w~--~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
..+. +...+ .+....+|-....|. ...|. ..-.||.||++|++..+.++.+++ .|||||=+|+-.
T Consensus 266 ~~d~--gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 266 KAEE--GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred ccCC--CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCCC
Confidence 2211 11111 122223333322221 12232 234699999999999999998888 899999999854
No 111
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=88.71 E-value=11 Score=40.90 Aligned_cols=167 Identities=15% Similarity=0.103 Sum_probs=93.4
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHH-HHHH-HHHHHcCCEEEEeeccCCCCCCccc
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDL-KSLI-DKAHELGLLVLMDIVHSHASNNVLD 418 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edf-k~LV-~~aH~~GI~VIlDvV~NH~s~~~~~ 418 (837)
+..|++|+++|+|+|+|-++.+..+.+. +..-|=++.+.--.+|| -+.+ +...+.|++|..-+..=-
T Consensus 20 ~~l~~ri~~~~~~tV~Lqaf~d~~gdg~----~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvla------- 88 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQAFADPDGDGN----ADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLA------- 88 (294)
T ss_pred HHHHHHHHHcCCCEEEEEeeeCCCCCCc----eeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhh-------
Confidence 3688999999999999999887654332 22234455555555554 4444 344489999998876411
Q ss_pred cccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEe-cccccccccccCccccccCCc
Q 003226 419 GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRF-DGVTSMMYTHHGLQVAFTGNY 497 (837)
Q Consensus 419 ~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~-D~v~~m~~~~~g~~~~f~~~~ 497 (837)
|+-....+...........-+..-|..-+|++|+.|.++-.-....-.|||+=| |-+ ++. ++.++. ..
T Consensus 89 ----f~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa--~L~-D~E~~~----~~ 157 (294)
T PF14883_consen 89 ----FDLPKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDA--VLS-DFEIAA----IR 157 (294)
T ss_pred ----ccCCCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCc--ccc-chhhhh----hc
Confidence 111111111000000000011234677789999999999999998449999988 332 111 111100 00
Q ss_pred ccccCcccCchHHHHHHHHHHhhhccCCCeEE
Q 003226 498 SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS 529 (837)
Q Consensus 498 ~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~ 529 (837)
.+.........-+.|..++.+.++...|++.+
T Consensus 158 ~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 158 QNPADRQKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHhCccchh
Confidence 00000000011257899999999988887554
No 112
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=88.69 E-value=1.2 Score=39.94 Aligned_cols=58 Identities=21% Similarity=0.392 Sum_probs=39.8
Q ss_pred EEEEEeCC--CcCEEEEEee---cCCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003226 205 ITYREWAP--GAKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 268 (837)
Q Consensus 205 v~fr~WAP--~A~~V~L~gD---fn~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~ 268 (837)
++|++=+. -.+.|+|+|+ +++|++. +.+|+..+.+.|++.+.-.. +. ...|||.+...
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~-~~-----~~eYKy~~~~~ 66 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPA-GT-----AIEYKYIKKDG 66 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCC-CC-----eEEEEEEEECC
Confidence 45665432 3579999994 8899865 57998888899988875322 11 25788876543
No 113
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=88.67 E-value=3.6 Score=44.32 Aligned_cols=152 Identities=21% Similarity=0.181 Sum_probs=80.7
Q ss_pred hhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHH---HHHHHHHHHcCCEEEEeeccCCCCC
Q 003226 338 NFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDL---KSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 338 ~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edf---k~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
+.....|.-||+.|||.|-|- |+-.|+..+ | ++--|+..|+ -++-++|..+||+|++|+-++-.-.
T Consensus 63 g~~qD~~~iLK~~GvNyvRlR-vwndP~dsn-g---------n~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwa 131 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLR-VWNDPYDSN-G---------NGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWA 131 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEE-EecCCccCC-C---------CccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhcc
Confidence 334468889999999998763 454454321 1 1112334444 4556778889999999986542211
Q ss_pred CccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCcccccc
Q 003226 415 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 494 (837)
Q Consensus 415 ~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 494 (837)
+ |. .....-.|....|+.-...|.+|-..++....+| ||+ .|+|.-=-... .+|-
T Consensus 132 D------------Pa-----kQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e-Gi~---pdmVQVGNEtn----~gfl 186 (403)
T COG3867 132 D------------PA-----KQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE-GIL---PDMVQVGNETN----GGFL 186 (403)
T ss_pred C------------hh-----hcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc-CCC---ccceEeccccC----Ccee
Confidence 1 00 0111123544444445566777777788888885 554 56553110010 1122
Q ss_pred CCcccccCcccCchHH-HHHHHHHHhhhccCCCeEE
Q 003226 495 GNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVS 529 (837)
Q Consensus 495 ~~~~~~~g~~~d~~a~-~fl~~~~~~v~~~~p~~~~ 529 (837)
..++|. .+-+.+ ..+.+...+|++..|++.+
T Consensus 187 wp~Ge~----~~f~k~a~L~n~g~~avrev~p~ikv 218 (403)
T COG3867 187 WPDGEG----RNFDKMAALLNAGIRAVREVSPTIKV 218 (403)
T ss_pred ccCCCC----cChHHHHHHHHHHhhhhhhcCCCceE
Confidence 112222 122222 3456666677777786543
No 114
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=86.29 E-value=2.6 Score=45.46 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=61.5
Q ss_pred CCHHhhHhhhhhHHHHcCC--CEEEECCccccCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 334 NTYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 334 G~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~s~GY~~~~y~avd-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
.+-.++. +.+..+++.|+ ++|+|-.=+.... +.++ +..+ .+|-+ .++||+.+|++|++|++-+.+.
T Consensus 21 ~~~~~v~-~~~~~~~~~~iP~d~~~lD~~~~~~~-~~f~------~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 21 GDQDKVL-EVIDGMRENDIPLDGFVLDDDYTDGY-GDFT------FDWDAGKFPN---PKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred CCHHHHH-HHHHHHHHcCCCccEEEECcccccCC-ceee------eecChhhCCC---HHHHHHHHHHCCCEEEEEeChh
Confidence 3555666 58888888665 5787755443221 1121 2333 36654 5789999999999999976542
Q ss_pred CCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 411 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 411 H~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
+ ++...+.++..+.++|||||-+|...
T Consensus 90 -v------------------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 90 -I------------------------------------------REWWAEVVKKLLVSLGVDGFWTDMGE 116 (265)
T ss_pred -H------------------------------------------HHHHHHHHHHhhccCCCCEEeccCCC
Confidence 1 55666666666556999999999764
No 115
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.26 E-value=10 Score=41.75 Aligned_cols=166 Identities=17% Similarity=0.110 Sum_probs=93.6
Q ss_pred HHhhHhhhhhHHHHcCCCEEEECCc--cccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEee-ccCCC
Q 003226 336 YANFRDDVLPRIKRLGYNAVQIMAV--QEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI-VHSHA 412 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt~I~L~Pi--~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDv-V~NH~ 412 (837)
...|. +.++.++.+|+|.++|==- ++.+.....++ ....=|.+|++++++-|.++||.||--+ ++.|+
T Consensus 16 ~~~lk-~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~--------~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 16 VSYLK-KLLRLLALLGANGLLLYYEDTFPYEGEPEVGR--------MRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred HHHHH-HHHHHHHHcCCCEEEEEEecceecCCCccccc--------CCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 34455 6899999999999987211 11111111111 1222379999999999999999999876 36776
Q ss_pred CCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCcccc
Q 003226 413 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVA 492 (837)
Q Consensus 413 s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~ 492 (837)
..- +. . +.|-....... ....||..+|++.+++.+.+.-.++-|.- ..+ |+ |-.+.
T Consensus 87 ~~~----l~-~----~~~~~l~~~~~----~~~~l~~~~~~t~~fi~~li~ev~~~f~s-----~~~-HI-----G~DE~ 142 (301)
T cd06565 87 EFI----LK-H----PEFRHLREVDD----PPQTLCPGEPKTYDFIEEMIRQVLELHPS-----KYI-HI-----GMDEA 142 (301)
T ss_pred HHH----Hh-C----cccccccccCC----CCCccCCCChhHHHHHHHHHHHHHHhCCC-----CeE-EE-----CCCcc
Confidence 421 11 0 01110000000 02368999999999999999999995431 111 22 22221
Q ss_pred ccCC---cccccCcc-cCchHHHHHHHHHHhhhccCCCeEEEEecc
Q 003226 493 FTGN---YSEYFGFA-TDVDAVVYLMLVNDMIHGLYPEAVSIGEDV 534 (837)
Q Consensus 493 f~~~---~~~~~g~~-~d~~a~~fl~~~~~~v~~~~p~~~~iaE~~ 534 (837)
+... +.+..+.. ...--..|++.+.+.+++..+..++-+|..
T Consensus 143 ~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~ 188 (301)
T cd06565 143 YDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDML 188 (301)
T ss_pred cccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHh
Confidence 2111 11111111 111124788999999998887666655543
No 116
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=86.09 E-value=2 Score=48.68 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=64.2
Q ss_pred hhhhhHHHHcCCCEEEECCcccc---CCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCcc
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL 417 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~---~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~ 417 (837)
++.|..+|++|+|+|.|-.+.=. |..+. | .-+.|.++|+.|+++||+|||-+.. ++.+
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~--y-------------dF~~lD~~l~~a~~~Gi~viL~~~~-~~~P--- 73 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQ--Y-------------DFSWLDRVLDLAAKHGIKVILGTPT-AAPP--- 73 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB------------------HHHHHHHHHHHCTT-EEEEEECT-TTS----
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCe--e-------------ecHHHHHHHHHHHhccCeEEEEecc-cccc---
Confidence 47899999999999998765311 11111 1 2345889999999999999998762 2221
Q ss_pred ccccCCCCCCCcccccCCCCCcccCCC-cCCCCCCHHHHHHHHHHHHHHHHHcC----CCeEEec
Q 003226 418 DGLNMFDGTDGHYFHSGSRGYHWMWDS-RLFNYGSWEVLRFLLSNARWWLEEYK----FDGFRFD 477 (837)
Q Consensus 418 ~~~~~fdg~~~~yf~~~~~g~~~~w~~-~~ln~~~~eVr~~l~~~l~~Wl~e~g----vDGfR~D 477 (837)
.++.. ..+.....+..|....++. ..+++.+|.+|+++...++..++.|+ |-|+-+|
T Consensus 74 ~Wl~~---~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~ 135 (374)
T PF02449_consen 74 AWLYD---KYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID 135 (374)
T ss_dssp HHHHC---CSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC
T ss_pred cchhh---hcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec
Confidence 12110 0011111112222222222 34678899999998888877777665 4455554
No 117
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.67 E-value=15 Score=41.47 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee-ccCCCCCCcc--ccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHH
Q 003226 385 TPDDLKSLIDKAHELGLLVLMDI-VHSHASNNVL--DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSN 461 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDv-V~NH~s~~~~--~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~ 461 (837)
|.+|+++||+-|.++||.||-.| ++.|+..--. ..+... +....+... .......||..+|++.+++.+.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~-~~~~~~~~~------~~~~~~~L~~~~~~t~~f~~~l 156 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCT-GGPGSVVSV------QGVVSNVLCPGKPETYTFLEDV 156 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCC-CCCCccccc------cCcCCCccCCCChhHHHHHHHH
Confidence 79999999999999999999998 5888843110 011110 111111100 0111246899999999999999
Q ss_pred HHHHHHHc
Q 003226 462 ARWWLEEY 469 (837)
Q Consensus 462 l~~Wl~e~ 469 (837)
+.-.++-|
T Consensus 157 l~E~~~lF 164 (357)
T cd06563 157 LDEVAELF 164 (357)
T ss_pred HHHHHHhC
Confidence 99999854
No 118
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=85.45 E-value=11 Score=43.08 Aligned_cols=115 Identities=21% Similarity=0.169 Sum_probs=73.7
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCcccccc
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 421 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~ 421 (837)
+-+.-+|+.|...|-|+.-.. .+..-|-=..++|.+++..+ ..|=+++|+++|+++||++-+ - |...+ +
T Consensus 85 ~Wa~~~k~AGakY~vlTaKHH-DGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~--Y--~S~~D---W-- 153 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKHH-DGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL--Y--HSLFD---W-- 153 (384)
T ss_pred HHHHHHHHcCCCeEEeeeeec-CCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE--E--cCHHH---h--
Confidence 567889999999887766542 22223444456777776655 458899999999999999998 2 22111 1
Q ss_pred CCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHH---HHHHHHHHHHcCCCeEEeccc
Q 003226 422 MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFL---LSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 422 ~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l---~~~l~~Wl~e~gvDGfR~D~v 479 (837)
+ .+.|... ++........+...+|+ ..-++-.++.||-|.+=||..
T Consensus 154 -~---~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 154 -F---NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred -C---CCccccc--------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 0 1222110 00001112234556777 888899999999999999975
No 119
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.40 E-value=2.1 Score=52.43 Aligned_cols=78 Identities=21% Similarity=0.277 Sum_probs=53.6
Q ss_pred hhcccccCCcEEeCCc-EEEEEeCCCcCEEEEEeecCCCCCCcccccc-CCCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003226 189 FSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (837)
Q Consensus 189 f~~~y~~lG~~~~~~g-v~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r-~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~ 266 (837)
+..-+..||.|...+| +.+|+|-|.|.+|.|+.. . .....+|.+ .+.|.|+..+|.. ..|++++.
T Consensus 23 ~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~--~~~~~~~~~~~~~g~f~~~~~~~----------~~y~~~~~ 89 (730)
T PRK12568 23 PADAFAVLGPHPQADGRRQVRVLAPGAEAMGLIDG-R--GKLLARMQASPIDGVFEGILPAD----------GPYRLRIV 89 (730)
T ss_pred cCCchHhcCCcCCCCCcEEEEEECCCCcEEEEEec-C--CccccccEecCCCCeEEEecCCC----------CCEEEEEE
Confidence 4455678999988888 699999999999999731 1 122237887 4679999999842 12777776
Q ss_pred CCCCccccCCccc
Q 003226 267 TPSGIKDSIPAWI 279 (837)
Q Consensus 267 ~~~~~~~~~~~~~ 279 (837)
..++.....+||.
T Consensus 90 ~~~~~~~~~dpy~ 102 (730)
T PRK12568 90 WPDVVQEIEDPYA 102 (730)
T ss_pred eCCceEEeecccc
Confidence 5443333445655
No 120
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=84.18 E-value=4.5 Score=45.42 Aligned_cols=149 Identities=18% Similarity=0.082 Sum_probs=81.8
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccc
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL 420 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~ 420 (837)
++-+.-+|++|...|-|+.-+. .+..-|-=..++|..++..+ ..+=+++|+++|+++||++.+ -+++. +-+
T Consensus 94 dqW~~~ak~aGakY~VlTakHH-DGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~--Y~S~~-dw~---- 164 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHH-DGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL--YYSPW-DWH---- 164 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-T-T--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE--EEESS-SCC----
T ss_pred HHHHHHHHHcCCCEEEeehhhc-CccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE--Eecch-Hhc----
Confidence 3567789999999998876553 22223443445544444333 358899999999999999998 22222 111
Q ss_pred cCCCCCCCcccccCCCCCcccCCCcCCCCC-CHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCccc
Q 003226 421 NMFDGTDGHYFHSGSRGYHWMWDSRLFNYG-SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSE 499 (837)
Q Consensus 421 ~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~-~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~ 499 (837)
.+.|... ..+. ........-. ...+.+++..-++-.++.|.+|.+=||+...-
T Consensus 165 ------~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~----------------- 218 (346)
T PF01120_consen 165 ------HPDYPPD-EEGD--ENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD----------------- 218 (346)
T ss_dssp ------CTTTTSS-CHCH--HCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC-----------------
T ss_pred ------CcccCCC-ccCC--cccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc-----------------
Confidence 0011000 0000 0000000000 01245588888999999999999999986321
Q ss_pred ccCcccCchHHHHHHHHHHhhhccCCCeEEEE
Q 003226 500 YFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 500 ~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~ia 531 (837)
..+.. ....+.+.+++..|++++..
T Consensus 219 ------~~~~~-~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 219 ------PDEDW-DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp ------CCTHH-HHHHHHHHHHHHSTTSEEEC
T ss_pred ------ccccc-CHHHHHHHHHHhCCeEEEec
Confidence 01112 23667788888889888765
No 121
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=83.77 E-value=0.84 Score=54.64 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhccCCCCcEEEEeec---CCCcEEEEEcC----eEEEEEECC
Q 003226 713 FDRAMQHLEEKYGFMTSEHQYVSRKD---QGDRVIVFERG----NLVFVFNFH 758 (837)
Q Consensus 713 f~~~Li~LRk~~~~L~~g~~~i~~~~---~~~~VlaF~R~----~llvv~Nf~ 758 (837)
...+++++|++++.+-.+..+..+.. ..+.|+||.|+ .+|+|.+..
T Consensus 775 v~~~aL~lR~~~~elF~~GdY~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Prl 827 (889)
T COG3280 775 VTAAALRLRREHPELFAGGDYLPLFAAGPAADHVIAFARGKDDQFAITVAPRL 827 (889)
T ss_pred HHHHHHHHHHhchHhhcCCCeeeecccCchhHHHHHHhhccCCceeEEeehHH
Confidence 56788999999986443333443332 23679999993 356666543
No 122
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=83.76 E-value=5.6 Score=46.31 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee-ccCCCCCCcc------ccccCCCCCC---CcccccCCC---CC--cccCCCcCCCC
Q 003226 385 TPDDLKSLIDKAHELGLLVLMDI-VHSHASNNVL------DGLNMFDGTD---GHYFHSGSR---GY--HWMWDSRLFNY 449 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDv-V~NH~s~~~~------~~~~~fdg~~---~~yf~~~~~---g~--~~~w~~~~ln~ 449 (837)
|.+|+++||+-|+++||.||-.| ++.|+..--. ..+.. .|.. ..|...+.. .+ ...|....||-
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~-~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p 173 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMA-AGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINP 173 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhc-cCCccccccccccCcccccccccccccccccccC
Confidence 79999999999999999999988 5888753100 00100 1110 011111110 00 11233457999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 003226 450 GSWEVLRFLLSNARWWLEE 468 (837)
Q Consensus 450 ~~~eVr~~l~~~l~~Wl~e 468 (837)
.++++.+||.+.+.-.++-
T Consensus 174 ~~~~ty~fl~~vl~Ev~~l 192 (445)
T cd06569 174 CMPSTYRFVDKVIDEIARM 192 (445)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 9999999999999998873
No 123
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=83.76 E-value=2.2 Score=47.74 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003226 391 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 391 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~g 470 (837)
..|++||++|++|+-=+.+...... ...+ ..|- .+++.+..+++.|...++.||
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~-------------~~~~------------~lL~-~~~~~~~~~a~kLv~lak~yG 103 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQV-------------EWLE------------DFLK-KDEDGSFPVADKLVEVAKYYG 103 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCch-------------HHHH------------HHhc-cCcccchHHHHHHHHHHHHhC
Confidence 6789999999999985543321000 0000 0000 113445566777777788899
Q ss_pred CCeEEecccccccccccCccccccCCcccccCcccCchH-HHHHHHHHHhhhccCCCeEEE
Q 003226 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEAVSI 530 (837)
Q Consensus 471 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a-~~fl~~~~~~v~~~~p~~~~i 530 (837)
+||+=+|.=... +...+.+. ..|++++++.+++..|+..+|
T Consensus 104 fDGw~iN~E~~~-------------------~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 104 FDGWLINIETEL-------------------GDAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CCceEeeeeccC-------------------CcHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 999999853211 01123333 379999999999988876655
No 124
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=82.42 E-value=1.5 Score=39.49 Aligned_cols=60 Identities=23% Similarity=0.452 Sum_probs=40.7
Q ss_pred EEEEEeCC--CcCEEEEEeecC---CCCC-CccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003226 205 ITYREWAP--GAKSASLIGDFN---NWNP-NADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 205 v~fr~WAP--~A~~V~L~gDfn---~w~~-~~~~m~r~----~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~ 270 (837)
|+|++-+. -.+.|.|+|+.. +|+. .+.+|... ...+|+++|.-.. +. -..|||.+...++
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~-----~~eYKy~i~~~~g 73 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GT-----PFEYKYVIKDADG 73 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TS-----EEEEEEEEEETTS
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CC-----EEEEEEEEEeCCC
Confidence 67887332 347899999865 7997 56889875 4589999985322 21 2478888865544
No 125
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=82.40 E-value=5.3 Score=36.26 Aligned_cols=60 Identities=20% Similarity=0.419 Sum_probs=43.0
Q ss_pred EEEEEeCCC---cCEEEEEee---cCCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC
Q 003226 205 ITYREWAPG---AKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 269 (837)
Q Consensus 205 v~fr~WAP~---A~~V~L~gD---fn~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~ 269 (837)
|+|++-.|. -+.|+|+|+ +.+|+.. +.+|...+...|++.++-.... .-..|||.+...+
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~-----~~ieYKyvi~~~~ 68 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDS-----FPFEYKYIIANKD 68 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCC-----ccEEEEEEEEeCC
Confidence 789998875 368999986 5689864 5789888889998888643211 1247898876543
No 126
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=82.22 E-value=5.1 Score=44.29 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHH
Q 003226 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 464 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~ 464 (837)
+.+++++-|+.||++|++|||-+ +.. .+ . ....++.-++.+++++.-
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~--------~~---~-----------------~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA--------NG---H-----------------VDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC--------CC---c-----------------cccCCHHHHHHHHHHHHH
Confidence 56889999999999999999875 100 00 0 013456778888999999
Q ss_pred HHHHcCCCeEEecc
Q 003226 465 WLEEYKFDGFRFDG 478 (837)
Q Consensus 465 Wl~e~gvDGfR~D~ 478 (837)
++++||+||+=||-
T Consensus 105 ~~~~~g~DGiDiD~ 118 (312)
T cd02871 105 IIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHhCCCeEEEec
Confidence 99999999999995
No 127
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=82.04 E-value=4 Score=33.25 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=24.7
Q ss_pred CeEEEEEECCCCCcccceEEeccCCceEEEEEeCCCCccCCccccCCCcccccccCccCCCCeEEEEEECCceEEEEE
Q 003226 749 GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 749 ~~llvv~Nf~~~~~~~~~~i~v~~~g~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~ 826 (837)
+.++|++|++. ++ ..+.+ +..++++|+.... +-.++|+|+++.||+
T Consensus 12 ~~y~F~~N~s~-~~---~~v~l--~~~~~dll~g~~~--------------------------~~~~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 12 GRYLFLLNFSD-EP---QTVTL--PESYTDLLTGETV--------------------------SGGLTLPPYGVRVLK 57 (58)
T ss_dssp TTEEEEEE-SS-S----EE------TT-EEEES---------------------------------SEE-TTEEEEEE
T ss_pred CEEEEEEECCC-CC---EEEEc--CCCceecccCcce--------------------------eeEEEECCCEEEEEE
Confidence 57999999994 22 33444 4567788763210 112789999999987
No 128
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=81.60 E-value=2.9 Score=36.50 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCCcEEEEEc----CeEEEEEECCC
Q 003226 739 QGDRVIVFER----GNLVFVFNFHW 759 (837)
Q Consensus 739 ~~~~VlaF~R----~~llvv~Nf~~ 759 (837)
..++|++|.| +.++||+|.+.
T Consensus 7 P~~gvYvYfR~~~~~tVmVilN~n~ 31 (78)
T PF10438_consen 7 PQDGVYVYFRYYDGKTVMVILNKND 31 (78)
T ss_dssp -BTTEEEEEEEESSEEEEEEEE-SS
T ss_pred ccCCEEEEEEEcCCCEEEEEEcCCC
Confidence 3577999999 57999999883
No 129
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=81.28 E-value=3.2 Score=39.18 Aligned_cols=56 Identities=18% Similarity=0.501 Sum_probs=40.1
Q ss_pred EEEEEeCC---CcCEEEEEee---cCCCCCC-ccccccC--CCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003226 205 ITYREWAP---GAKSASLIGD---FNNWNPN-ADIMTQN--EFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (837)
Q Consensus 205 v~fr~WAP---~A~~V~L~gD---fn~w~~~-~~~m~r~--~~GvWei~ip~~~~g~~~~~~g~~yk~~~~ 266 (837)
++|++-+| ..+.|+|+|+ +.+|+.. +.+|.+. ....|++.+.-.. +. -..|||.+.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~-~~-----~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPR-GV-----DFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECC-CC-----eEEEEEEEE
Confidence 78998885 3468999998 8999854 5789876 6789988775321 11 247888764
No 130
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=80.31 E-value=2.2 Score=47.62 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=71.4
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCccccccc------CCC----CCCCHHHHHHHHHHHHHcCCEEE
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA------PSS----RCGTPDDLKSLIDKAHELGLLVL 404 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~a------vd~----~~Gt~edfk~LV~~aH~~GI~VI 404 (837)
+...|. +.|+.+..+++|+++|=--- ..+|.+....|=. ..+ .+=|.+|+++||+-|+++||.||
T Consensus 16 ~~~~ik-~~id~ma~~k~N~lhlhl~D----~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 16 SVDTIK-RLIDQMAYYKLNVLHLHLSD----DQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp -HHHHH-HHHHHHHHTT-SEEEEEEES----STCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHH-HHHHHHHHcCCcEEEEEEec----CCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCcee
Confidence 345555 68999999999999873211 0122222211111 111 14478999999999999999999
Q ss_pred Eee-ccCCCCCCcc--ccccCC-CCCCCcccccCCCCCcccCCC--cCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003226 405 MDI-VHSHASNNVL--DGLNMF-DGTDGHYFHSGSRGYHWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 405 lDv-V~NH~s~~~~--~~~~~f-dg~~~~yf~~~~~g~~~~w~~--~~ln~~~~eVr~~l~~~l~~Wl~e~g 470 (837)
-.| ++.|+..--. ..+..- ...+..+.. ...+.. ..||..+|++.+++.+.+.-.++-+.
T Consensus 91 Peid~PGH~~~~l~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 91 PEIDTPGHAEAWLKAYPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp EEEEESSS-HHHHHHHHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred eeccCchHHHHHHHhCchhhcccccccccccc------ccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 998 5888854210 000000 000001110 011111 36899999999999999999999766
No 131
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=79.34 E-value=13 Score=41.29 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=72.4
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccC-----CCCCCCHHHHHHHHHHHHHcCCEEEEee-ccC
Q 003226 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAP-----SSRCGTPDDLKSLIDKAHELGLLVLMDI-VHS 410 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~av-----d~~~Gt~edfk~LV~~aH~~GI~VIlDv-V~N 410 (837)
..|. +.|+.++.+++|.++|==. ...+|.+....|=.+ ...|=|.+|+++||+-|.++||.||-.+ ++.
T Consensus 18 ~~ik-~~Id~ma~~KlN~lh~Hlt----Dd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PG 92 (311)
T cd06570 18 AVIK-RQLDAMASVKLNVFHWHLT----DDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPG 92 (311)
T ss_pred HHHH-HHHHHHHHhCCeEEEEEEe----cCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCcc
Confidence 3444 6889999999997776210 001222222222111 1223389999999999999999999988 588
Q ss_pred CCCCCccccccCCCC---CCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHc
Q 003226 411 HASNNVLDGLNMFDG---TDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 469 (837)
Q Consensus 411 H~s~~~~~~~~~fdg---~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~ 469 (837)
|+..- +..+.. ....+.. .+ .+......||..+|++.+++.+.+.-+++-|
T Consensus 93 H~~a~----~~~ypel~~~~~~~~~--~~--~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 93 HASAI----AVAYPELASGPGPYVI--ER--GWGVFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred chHHH----HHhCHHhccCCCcccc--cc--ccccCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 88531 111110 0000000 00 1111224699999999999999999998854
No 132
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=78.76 E-value=4.3 Score=49.76 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccCCC--CCCccccc-----cCCCCCCCcccccCCCCCcccCCCcCCCCCCHHH--HHH
Q 003226 387 DDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--LRF 457 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~NH~--s~~~~~~~-----~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV--r~~ 457 (837)
.+++++.+.|+++||++|-|+.+.=. |.+..... ..--|.+|.+|... | ..||.|.+|+..-+- -+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~--G--QnWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN--G--QNWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc--c--CcCCCCCcCHHHHHhcCcHH
Confidence 67888899999999999999986433 33321111 12247777888643 3 358888887742111 122
Q ss_pred HHHHHHHHHHHcCCCeEEeccccc
Q 003226 458 LLSNARWWLEEYKFDGFRFDGVTS 481 (837)
Q Consensus 458 l~~~l~~Wl~e~gvDGfR~D~v~~ 481 (837)
..+.+++-++ .+|.+|+|.+-.
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~G 371 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHILG 371 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechhh
Confidence 3444444444 589999998754
No 133
>PLN02316 synthase/transferase
Probab=77.53 E-value=23 Score=45.31 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCceEEEEecCC-CCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccc
Q 003226 315 KSLRIYEAHVGM-SSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH 363 (837)
Q Consensus 315 ~~~~IYE~hv~~-f~~~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~ 363 (837)
.++.| +||.+ ..+-.+.|.+..+..+.-..|+++|.+.--+||-+..
T Consensus 586 ~pM~I--l~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~ 633 (1036)
T PLN02316 586 PPMHI--VHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDC 633 (1036)
T ss_pred CCcEE--EEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence 34666 33332 2233456888777744455789999999999997763
No 134
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=76.45 E-value=16 Score=40.19 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHH
Q 003226 389 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEE 468 (837)
Q Consensus 389 fk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e 468 (837)
..++++.||++|++|++=|- +... . .|+. ..|+ --..+++.|+.+++++..++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~------~~~~---~~~~--------------~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-G------NFDS---ELAH--------------AVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-C------CCCH---HHHH--------------HHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999999999997653 1110 0 0100 0111 1134688899899999999999
Q ss_pred cCCCeEEecccccccccccCccccccCCcccccCcccCch-HHHHHHHHHHhhhcc
Q 003226 469 YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 523 (837)
Q Consensus 469 ~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~fl~~~~~~v~~~ 523 (837)
+|+||+-+|--. + ...+.+ -..|+++++..+++.
T Consensus 102 ~~~DGidiDwE~-~--------------------~~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFEN-V--------------------PPEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEeccc-C--------------------CHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998521 1 001222 247889999998754
No 135
>PLN02692 alpha-galactosidase
Probab=73.81 E-value=1.8e+02 Score=33.62 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=33.4
Q ss_pred HHHHcCCCEEEECCccccCCCCCCCCcccccccCCC-CCCCHHHHHHHHHHHHHcCCEEEE
Q 003226 346 RIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 346 yLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~-~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
.|+++||+.|.|=--+........|. ..+++ +| |..||.|++.+|++|+|.=+
T Consensus 86 gl~~~Gy~yv~iDDgW~~~~rd~~G~-----~~~d~~kF--P~G~k~ladyiH~~GLKfGI 139 (412)
T PLN02692 86 GLSKLGYTYVNIDDCWAEIARDEKGN-----LVPKKSTF--PSGIKALADYVHSKGLKLGI 139 (412)
T ss_pred cchhcCcEEEEEcCCcCCCCCCCCCC-----eeeChhhc--CCcHHHHHHHHHHCCCceEE
Confidence 46889999998755443222112232 22222 33 45699999999999998644
No 136
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=73.48 E-value=64 Score=35.48 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=57.3
Q ss_pred hHHHHcCCCEEEECCcccc-CCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCC
Q 003226 345 PRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF 423 (837)
Q Consensus 345 dyLk~LGvt~I~L~Pi~e~-~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f 423 (837)
.+.++.|+++|-|-=+... .....|+-. ....+...++.-|++|+++|++||+=+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~--------~~~~~~~~~~~~i~~lk~~G~kViiS~---------------- 74 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGS--------YPLDQGGWIKSDIAALRAAGGDVIVSF---------------- 74 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCC--------CCcccchhHHHHHHHHHHcCCeEEEEe----------------
Confidence 4677889999977533222 122245421 011235678888999999999999831
Q ss_pred CCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecc
Q 003226 424 DGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 424 dg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
-|....++.. ...-++.+.+++.-.++.|++||+-||-
T Consensus 75 GG~~g~~~~~-----------------~~~~~~~~~~a~~~~i~~y~~dgiDfDi 112 (294)
T cd06543 75 GGASGTPLAT-----------------SCTSADQLAAAYQKVIDAYGLTHLDFDI 112 (294)
T ss_pred cCCCCCcccc-----------------CcccHHHHHHHHHHHHHHhCCCeEEEec
Confidence 1111111111 1234566777777788999999999984
No 137
>PRK14705 glycogen branching enzyme; Provisional
Probab=73.35 E-value=7.3 Score=50.51 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=53.3
Q ss_pred hcccccCCcEEeCCcE-EEEEeCCCcCEEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003226 190 SRGYEKFGFIRSDTGI-TYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 268 (837)
Q Consensus 190 ~~~y~~lG~~~~~~gv-~fr~WAP~A~~V~L~gDfn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~ 268 (837)
..-+.-||.|..++|+ ++|+|-|.|.+|.|+.. ....+|.+.+.|+|+..+|....+. ...|++++...
T Consensus 517 ~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~y~~~~~~~ 586 (1224)
T PRK14705 517 HAPHSVLGAHLDDHGHVTVRTVKHLAKAVSVVTA-----AGRVPMTHEAHGVWAAVLEPLQAGH-----VPDYRLEVTYD 586 (1224)
T ss_pred CCChHhcCCcCCCCceEEEEEECCCCeEEEEEeC-----CCceeeeeCCCCEEEEeccccccCC-----CCCeEEEEEeC
Confidence 4446689999888885 69999999999999742 2234788888899999998421111 01377777644
Q ss_pred CCc-cccCCccc
Q 003226 269 SGI-KDSIPAWI 279 (837)
Q Consensus 269 ~~~-~~~~~~~~ 279 (837)
++. ....+||.
T Consensus 587 ~~~~~~~~d~y~ 598 (1224)
T PRK14705 587 GAEPVTIDDPYH 598 (1224)
T ss_pred CccceEeccccc
Confidence 332 23345554
No 138
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=73.24 E-value=9.8 Score=34.99 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=41.7
Q ss_pred ccCCcEEeCCcEEEEEeCCC--cCEEEEEeecCC--CCCCccccccCC----CceEEEEeCCCCCCCCCCCCCCEEEEEE
Q 003226 194 EKFGFIRSDTGITYREWAPG--AKSASLIGDFNN--WNPNADIMTQNE----FGVWEIFLPNNADGSPPIPHGSRVKIHM 265 (837)
Q Consensus 194 ~~lG~~~~~~gv~fr~WAP~--A~~V~L~gDfn~--w~~~~~~m~r~~----~GvWei~ip~~~~g~~~~~~g~~yk~~~ 265 (837)
.++|+ +.+++|++++. +++|.|+..-.. +.....+|.+.. ...|+++|+... | -..|.|.+
T Consensus 11 ~p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~------~~~Y~F~l 79 (116)
T cd02857 11 YPYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPT-G------RLRYYFEL 79 (116)
T ss_pred EEcCC----CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCC-c------EEEEEEEE
Confidence 37777 56899999875 578888753221 233456887642 357999998542 2 24788888
Q ss_pred eCC
Q 003226 266 DTP 268 (837)
Q Consensus 266 ~~~ 268 (837)
...
T Consensus 80 ~~~ 82 (116)
T cd02857 80 VDD 82 (116)
T ss_pred EcC
Confidence 653
No 139
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=72.90 E-value=7.7 Score=47.38 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=54.8
Q ss_pred cEEEEEeCCCcCEEEEEeec-CC-CCCC---ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCcc
Q 003226 204 GITYREWAPGAKSASLIGDF-NN-WNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAW 278 (837)
Q Consensus 204 gv~fr~WAP~A~~V~L~gDf-n~-w~~~---~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~~~~~~~~~ 278 (837)
|.++++|+|.|+.+.+.+.- ++ |++. .+.|.|...|.|...|.+......+...+..|.+.+...+...+..+++
T Consensus 68 G~iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 147 (697)
T COG1523 68 GAIWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPY 147 (697)
T ss_pred ccEEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccC
Confidence 44899999999999999843 22 4432 3577888899999999987655533344455555544332224555666
Q ss_pred ceeeccCC
Q 003226 279 IKFSVQAP 286 (837)
Q Consensus 279 ~~~~~~~~ 286 (837)
.+.++..+
T Consensus 148 ~Ksvv~~~ 155 (697)
T COG1523 148 PKSVVIDP 155 (697)
T ss_pred CceEEecc
Confidence 66666554
No 140
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=72.77 E-value=55 Score=35.38 Aligned_cols=156 Identities=14% Similarity=0.148 Sum_probs=92.8
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCcc-cc
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL-DG 419 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~-~~ 419 (837)
++.+.-|.+-+++.|-+=|-. ..+..+=.+++++|.+. +.|.++|.=+-+.-+..-.. +.
T Consensus 33 d~~~~~i~~~~f~llVVDps~---------------~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~Ywd 93 (300)
T COG2342 33 DAYINEILNSPFDLLVVDPSY---------------CGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRFYWD 93 (300)
T ss_pred cchHHHHhcCCCcEEEEeccc---------------cCCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhhHhh
Confidence 467788888889888766632 12223335688888664 45667776665554432211 01
Q ss_pred ccCCCCCCCcccccCCCCCcccC-CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcc
Q 003226 420 LNMFDGTDGHYFHSGSRGYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYS 498 (837)
Q Consensus 420 ~~~fdg~~~~yf~~~~~g~~~~w-~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~ 498 (837)
.....+ .+.|.-. ..+.| |.-...|-.|+-++.+.+-+...++ .|+||.-+|.|...-|.. ...
T Consensus 94 ~~w~~~-~p~wLg~----edP~W~Gny~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y~Y~~---------~~~ 158 (300)
T COG2342 94 KYWLTG-RPDWLGE----EDPEWPGNYAVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAYWYVE---------WND 158 (300)
T ss_pred hhhhcC-CcccccC----CCCCCCCCceeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechHHHHH---------Hhc
Confidence 111111 1222211 12234 2345677889999999999999988 799999999986542210 001
Q ss_pred cccCcccCchHHHHHHHHHHhhhccCCCeEEE
Q 003226 499 EYFGFATDVDAVVYLMLVNDMIHGLYPEAVSI 530 (837)
Q Consensus 499 ~~~g~~~d~~a~~fl~~~~~~v~~~~p~~~~i 530 (837)
..-+.+.....+.|+.++.+.++..+|.+.+|
T Consensus 159 ~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi 190 (300)
T COG2342 159 RETGVNAAKKMVKFIAAIAEYARAANPLFRVI 190 (300)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 11122222334578999999999999996665
No 141
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=72.50 E-value=3.8 Score=45.53 Aligned_cols=59 Identities=25% Similarity=0.256 Sum_probs=35.8
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
+++|..+|++|+|+|..-=.+..-... -| .-| |-...||..|++.|+++||.|||-.=+
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~-~g--~~d-------f~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPE-EG--QFD-------FTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSB-TT--B----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHhCCcceEEEeccccccCCC-CC--ccc-------ccchhhHHHHHHHHHHcCcEEEecccc
Confidence 368999999999999764322210000 01 112 223579999999999999999998543
No 142
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=70.11 E-value=14 Score=33.57 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=39.7
Q ss_pred EEEEEeCCCc--CEEEEEee---cCCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003226 205 ITYREWAPGA--KSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 205 v~fr~WAP~A--~~V~L~gD---fn~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~ 267 (837)
++|++-+|.. +.|.|+|+ ..+|+.. +.+|...+...|++.+.-.. + ....|||.+..
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~-----~~veYKY~i~~ 64 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-S-----VYIEYKYFVSN 64 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-C-----CcEEEEEEEEe
Confidence 5677655544 78999997 6789864 57898878889988775322 1 13588888753
No 143
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=69.67 E-value=8.6 Score=47.23 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=48.5
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCC----CCCCcccccccCCCCCCCHHHHH
Q 003226 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYA----SFGYHVTNFFAPSSRCGTPDDLK 390 (837)
Q Consensus 331 ~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~----s~GY~~~~y~avd~~~Gt~edfk 390 (837)
-++|+|..+. +.++.+++.|.+.|||+||.....++ |-.|.+.+=|+.+|-|=.++.|-
T Consensus 77 ~GIGDfgdL~-~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 77 VGAGDFGDLE-ALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred CCcccHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 5899999976 79999999999999999998764222 34799999999998888876664
No 144
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=69.52 E-value=12 Score=39.64 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=35.7
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 407 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDv 407 (837)
+-|.++|+||+++|+|+-=+ ..+ ..++..++|+.+|++|++|+-.+
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~---------------~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGS---------------MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCc---------------cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 45669999999999986421 111 26889999999999999999553
No 145
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=69.48 E-value=8.6 Score=42.08 Aligned_cols=66 Identities=27% Similarity=0.452 Sum_probs=37.7
Q ss_pred hhhhHHHHcCCCEEEECCccccCCC---CCCCCcc--------cccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYY---ASFGYHV--------TNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~---~s~GY~~--------~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+-|+.+|+-|||+|+++-+.+.... ...|+.+ .||..+++.| -+-+.++|+.|.++||.+ ++|+-
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~--~lv~~ 109 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA--ALVPF 109 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE--EEESS
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE--EEEEE
Confidence 5699999999999999776654321 1122222 3555555554 578999999999999988 46665
Q ss_pred C
Q 003226 411 H 411 (837)
Q Consensus 411 H 411 (837)
|
T Consensus 110 w 110 (289)
T PF13204_consen 110 W 110 (289)
T ss_dssp -
T ss_pred E
Confidence 4
No 146
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=69.26 E-value=15 Score=33.33 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=38.5
Q ss_pred EEEEEeCCC---cCEEEEEe---ecCCCCCCcccccc---CCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003226 205 ITYREWAPG---AKSASLIG---DFNNWNPNADIMTQ---NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 205 v~fr~WAP~---A~~V~L~g---Dfn~w~~~~~~m~r---~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~ 270 (837)
|+|++=.|. .+.|+|+| ++.+|+....+|.. ...+.|++.+... .|. -..|||.+...++
T Consensus 5 v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp-~~~-----~veyKyv~~~~~~ 73 (99)
T cd05809 5 QTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLP-AGR-----NIEFKAIKKSKDG 73 (99)
T ss_pred EEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEec-CCC-----cEEEEEEEEcCCC
Confidence 678875443 47899999 58899876434432 3468998887532 222 2578888765443
No 147
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=68.91 E-value=16 Score=32.39 Aligned_cols=60 Identities=18% Similarity=0.385 Sum_probs=39.4
Q ss_pred EEEEEeC--CCcCEEEEEeec---CCCCC-CccccccCC-CceEEEEeCCCC-CCCCCCCCCCEEEEEEeCCC
Q 003226 205 ITYREWA--PGAKSASLIGDF---NNWNP-NADIMTQNE-FGVWEIFLPNNA-DGSPPIPHGSRVKIHMDTPS 269 (837)
Q Consensus 205 v~fr~WA--P~A~~V~L~gDf---n~w~~-~~~~m~r~~-~GvWei~ip~~~-~g~~~~~~g~~yk~~~~~~~ 269 (837)
++|++-+ .--+.+.|+|+. -+|+. .+.+|+..+ .+.|++.++-.. .+. -..|||.+...+
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~-----~~~yKy~~~~~~ 69 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQ-----VIEYKYVIVDDD 69 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCC-----eEEEEEEEECCC
Confidence 4566543 334789999974 47986 457898777 899998876432 111 247888876543
No 148
>TIGR03356 BGL beta-galactosidase.
Probab=68.43 E-value=31 Score=40.03 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=64.7
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 332 ~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.+..|.-.. +-|..||+||+|++-+.=-+..-. . -|- -. ..-...+-++++|++|+++||.+|+++.+
T Consensus 49 a~d~y~~y~-eDi~l~~~~G~~~~R~si~Wsri~-p-~g~-----~~--~n~~~~~~y~~~i~~l~~~gi~pivtL~H-- 116 (427)
T TIGR03356 49 ACDHYHRYE-EDVALMKELGVDAYRFSIAWPRIF-P-EGT-----GP--VNPKGLDFYDRLVDELLEAGIEPFVTLYH-- 116 (427)
T ss_pred cccHHHhHH-HHHHHHHHcCCCeEEcccchhhcc-c-CCC-----CC--cCHHHHHHHHHHHHHHHHcCCeeEEeecc--
Confidence 344565555 799999999999986533221100 0 010 00 11123577899999999999999999874
Q ss_pred CCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003226 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~g 470 (837)
.. .|.++... . -+.++++.+.+.+.++.-+++||
T Consensus 117 fd-------------~P~~l~~~-g-----------Gw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 117 WD-------------LPQALEDR-G-----------GWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred CC-------------ccHHHHhc-C-----------CCCChHHHHHHHHHHHHHHHHhC
Confidence 21 12232211 1 23567888889999999898876
No 149
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=66.66 E-value=9.1 Score=44.03 Aligned_cols=59 Identities=29% Similarity=0.402 Sum_probs=39.5
Q ss_pred HhhhhhHHHHcCCCEEEECCccccCCCCCCCCccccccc-CCCCCC---CHHHHHHHHHHHHHcCCEEEEeec
Q 003226 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA-PSSRCG---TPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~a-vd~~~G---t~edfk~LV~~aH~~GI~VIlDvV 408 (837)
+++-+.++|+.|+|+|.|. +||....... .+|.+= ...=+.+.|+.|.++||+|+||+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiP----------i~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIP----------IGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEcc----------cchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 3478999999999999863 2332211110 334332 233567779999999999999974
No 150
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=65.72 E-value=49 Score=35.95 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=39.5
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCC-cccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGY-HVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY-~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
++.... .-+|+-+++|+..|.+--=++. |++ ...|+..+.+. .++++||+=|+++|++|+|=+.
T Consensus 30 ~t~~~k-~yIDfAa~~G~eYvlvD~GW~~-----~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 30 TTETQK-RYIDFAAEMGIEYVLVDAGWYG-----WEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp SHHHHH-HHHHHHHHTT-SEEEEBTTCCG-----S--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHH-HHHHHHHHcCCCEEEecccccc-----ccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEe
Confidence 666665 6899999999999987222211 111 23444455444 7899999999999999999654
No 151
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=65.45 E-value=9.4 Score=41.94 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=29.0
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
..+++||+||+|+|-+--|- |.- .-+++. +++.+.||.||+|+---+.
T Consensus 57 rDi~~l~~LgiNtIRVY~vd-------------------p~~-nHd~CM---~~~~~aGIYvi~Dl~~p~~ 104 (314)
T PF03198_consen 57 RDIPLLKELGINTIRVYSVD-------------------PSK-NHDECM---SAFADAGIYVILDLNTPNG 104 (314)
T ss_dssp HHHHHHHHHT-SEEEES----------------------TTS---HHHH---HHHHHTT-EEEEES-BTTB
T ss_pred HhHHHHHHcCCCEEEEEEeC-------------------CCC-CHHHHH---HHHHhCCCEEEEecCCCCc
Confidence 57899999999999764443 332 234444 4466789999999875533
No 152
>PLN03059 beta-galactosidase; Provisional
Probab=64.95 E-value=8.1 Score=47.86 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=39.8
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 407 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDv 407 (837)
++|..+|++|+|+|..-= -|.++--. .=.-.|.+..||.++++.|++.||.|||=.
T Consensus 63 d~L~k~Ka~GlNtV~tYV--------~Wn~HEp~--~G~~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYV--------FWNGHEPS--PGNYYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHcCCCeEEEEe--------cccccCCC--CCeeeccchHHHHHHHHHHHHcCCEEEecC
Confidence 688999999999997422 23322111 001134568999999999999999999963
No 153
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=64.10 E-value=13 Score=45.74 Aligned_cols=64 Identities=6% Similarity=0.060 Sum_probs=52.1
Q ss_pred CCCCCCHHhhHhhhhhHHHHcCCCEEEECCcccc---CCCCCCCCcccccccCCCCCCCHHHHHHHHH
Q 003226 330 EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLID 394 (837)
Q Consensus 330 ~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~---~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~ 394 (837)
+-++|+|..+. +.++.+++.|.+.|+|+|+..- ..+.+-.|.+.+=|+.+|-|=.++.+-++..
T Consensus 158 ~~GIGDfgdl~-~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~~ 224 (695)
T PRK11052 158 NWGIGDFGDLK-QMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQQ 224 (695)
T ss_pred CCCeecHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhhh
Confidence 45899999977 7999999999999999999952 1223567999999999999988888776643
No 154
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=63.25 E-value=13 Score=42.08 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=37.7
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCC-CCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRC-GTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~-Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
++.... +.|...+++|++.|...= . .|+..- -..+.|++|++.||+.||.||+||-+.
T Consensus 12 ~~~~~~-~yi~~a~~~Gf~~iFTSL-~----------------ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENK-AYIEKAAKYGFKRIFTSL-H----------------IPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHH-HHHHHHHCTTEEEEEEEE--------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHH-HHHHHHHHCCCCEEECCC-C----------------cCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 455554 577778899999986531 1 111111 126899999999999999999998764
No 155
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=62.93 E-value=27 Score=31.27 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=38.3
Q ss_pred EEEEEeCCCc---CEEEEEee---cCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003226 205 ITYREWAPGA---KSASLIGD---FNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 205 v~fr~WAP~A---~~V~L~gD---fn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~ 267 (837)
++|++-+|+. +.++|+|+ +-+|+. ..+|...+.+.|++.+.-.. +. ...|||.+..
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~~~~~~~W~~~v~lp~-~~-----~ieYky~~~~ 64 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQYVKDGFWSASVSLPV-DT-----HVEWKFVLVE 64 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCcCCCCCCEEEEEEecC-CC-----cEEEEEEEEc
Confidence 6788876643 55778886 467986 68998778899977764321 21 3578887643
No 156
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=62.64 E-value=89 Score=31.74 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHH
Q 003226 385 TPDDLKSLIDKAHEL--GLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 462 (837)
Q Consensus 385 t~edfk~LV~~aH~~--GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l 462 (837)
..+.....+.++|++ |++|++=+--.. . ...+ --..++..|+.+++++
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~~-------------~--~~~~---------------~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGWT-------------D--SSPF---------------TLASDPASRAAFANSL 96 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCCC-------------C--CCCc---------------hhhcCHHHHHHHHHHH
Confidence 345566777888887 999998652100 0 0000 1134677888889999
Q ss_pred HHHHHHcCCCeEEecc
Q 003226 463 RWWLEEYKFDGFRFDG 478 (837)
Q Consensus 463 ~~Wl~e~gvDGfR~D~ 478 (837)
..+++++++||+=+|-
T Consensus 97 ~~~v~~~~~DGidiD~ 112 (210)
T cd00598 97 VSFLKTYGFDGVDIDW 112 (210)
T ss_pred HHHHHHcCCCceEEee
Confidence 9999999999999995
No 157
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=59.05 E-value=24 Score=31.76 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=37.8
Q ss_pred CCcEEEEEcCe----EEEEEECCCCCcccceEEeccC----Cc-eEEEEEeCCCCccCCccccCCCcccccccCccCCCC
Q 003226 740 GDRVIVFERGN----LVFVFNFHWNSSYSDYRVGCLK----PG-KYKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRP 810 (837)
Q Consensus 740 ~~~VlaF~R~~----llvv~Nf~~~~~~~~~~i~v~~----~g-~~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~ 810 (837)
++..+||.|+. +|+|+|.....+...|.+.++. +| ++.+||+.....- +..
T Consensus 5 d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~tv--------------------~~~ 64 (91)
T PF09260_consen 5 DDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYTV--------------------DSN 64 (91)
T ss_dssp ETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE----------------------TT
T ss_pred CCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEEE--------------------CCC
Confidence 35799999976 8888876643245667777762 23 4666665322111 123
Q ss_pred eEEEEEECCceEEEEEEec
Q 003226 811 HSFLVYAPSRTAVVYALAD 829 (837)
Q Consensus 811 ~~~~l~Lp~~s~~Vl~~~~ 829 (837)
+.+.|.+-...=.||-+..
T Consensus 65 G~l~v~m~~G~P~Vl~P~~ 83 (91)
T PF09260_consen 65 GTLTVPMSNGEPRVLYPAS 83 (91)
T ss_dssp S-EEEEESTT--EEEEECH
T ss_pred CEEEEEEcCCceEEEEEHH
Confidence 3477777777777777653
No 158
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=57.01 E-value=21 Score=41.11 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=32.8
Q ss_pred cCCC-cCCCCC-----CHHHHHHHHHHHHHHHHHcCCCeEEecccccc
Q 003226 441 MWDS-RLFNYG-----SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 441 ~w~~-~~ln~~-----~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
.||. ..|.|+ +|.++++|.+..+.-.+ -++|||+|..++-
T Consensus 359 vWGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST 404 (423)
T PF14701_consen 359 VWGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHST 404 (423)
T ss_pred ecCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCC
Confidence 3554 568885 58999999999998888 7999999998764
No 159
>PTZ00445 p36-lilke protein; Provisional
Probab=55.81 E-value=23 Score=36.88 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=40.9
Q ss_pred HHhhHhhhhhHHHHcCCCEEEE----CCccccCCCCCCCCcccccccCCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 003226 336 YANFRDDVLPRIKRLGYNAVQI----MAVQEHSYYASFGYHVTNFFAPSSRCGT--PDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt~I~L----~Pi~e~~~~~s~GY~~~~y~avd~~~Gt--~edfk~LV~~aH~~GI~VIl 405 (837)
..+.++...+.|++.||.+|-+ +=|-.|. -||+--+ +-+.++++ ..+|+.|+.++.+.||+|++
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~Hs----gG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIASDFDLTMITKHS----GGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecchhhhhhhhc----ccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 3445555678899999999953 1122222 3444332 22333433 35599999999999999985
No 160
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.32 E-value=1.1e+02 Score=34.80 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHH---HHHHHHHHH
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLSNA 462 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~e---Vr~~l~~~l 462 (837)
.+.||+|++++|++|=++++-+. |.+.........+.+.. . ...... ....+..+ --....+ +.+.+..++
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL~--H~Gr~~~~~~~~~~~~~-~-~~ps~~-~~~~~~~p-~~mt~~eI~~ii~~f~~AA 150 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQLW--HVGAMRKLGTPPFPDVP-P-LSPSGL-VGPGKPVG-REMTEADIDDVIAAFARAA 150 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCCcCcccCccCCCc-e-eCCCCC-CcCCCCCC-ccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999875 44443211000011110 0 000000 00000000 0112223 333344455
Q ss_pred HHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccC-CCe
Q 003226 463 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY-PEA 527 (837)
Q Consensus 463 ~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~-p~~ 527 (837)
+.-.+ .|+||.-+-+++..+-... +...+...-.+|.|.-. ....|+.++.+.|++.- |++
T Consensus 151 ~~a~~-aGfDgVeih~ahGyLl~qF-LSp~~N~RtDeYGGsle--nR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 151 ADARR-LGFDGIELHGAHGYLIDQF-FWAGTNRRADGYGGSLA--ARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred HHHHH-cCCCEEEEecccchHHHHh-cCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHcCCCC
Confidence 55555 7999999998864322110 00111111233333222 23567788888887754 443
No 161
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=54.56 E-value=16 Score=34.26 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=29.3
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
.+.++.+.++|+.+||+.|= .+-.++++.|+++||+||-
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g--------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG--------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT--------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEcc--------------------------hHHHHHHHHHHHcCCEEEe
Confidence 36899999999999999883 4456889999999999984
No 162
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=54.17 E-value=28 Score=30.87 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=23.2
Q ss_pred CcCEEEEEeecCCCCCC-ccccccCC----CceEEEEeC
Q 003226 213 GAKSASLIGDFNNWNPN-ADIMTQNE----FGVWEIFLP 246 (837)
Q Consensus 213 ~A~~V~L~gDfn~w~~~-~~~m~r~~----~GvWei~ip 246 (837)
.|.+|.|.+.||+|... ...|.+.. .|.|+++|.
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~ 55 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVD 55 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEE
Confidence 58899999989999755 46777655 799999993
No 163
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=51.59 E-value=47 Score=37.20 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecc
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
.+.||+|++++|+.|-++++-+.|
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL~H 102 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQLWH 102 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHHHHHHhcCccceeeccc
Confidence 789999999999999999999764
No 164
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=51.47 E-value=2.1e+02 Score=32.64 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
.+.||+|++++|++|-++++-+. |.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~--H~ 106 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLT--AG 106 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcc--Cc
Confidence 57899999999999999998875 54
No 165
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=50.87 E-value=22 Score=39.41 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003226 391 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 391 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~g 470 (837)
..|++||++|++|+==+.+.+-.... ... ........+ .-.+-+.|++. ++.||
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~--~~~-------~ll~~~~~g-------------~~~~A~kLi~i----a~~yG 99 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAE--WCE-------ELLEKDEDG-------------SFPYADKLIEI----AKYYG 99 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HH--HHH-------HHT---TTS---------------HHHHHHHHH----HHHHT
T ss_pred hhHHHHHhcCceEEEEEEecCCchHH--HHH-------HHHcCCccc-------------ccHHHHHHHHH----HHHcC
Confidence 57899999999998766662221100 000 000001111 11223444444 45589
Q ss_pred CCeEEecccccccccccCccccccCCcccccCcccCc-hHHHHHHHHHHhhhccCCCeEEE
Q 003226 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDMIHGLYPEAVSI 530 (837)
Q Consensus 471 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~a~~fl~~~~~~v~~~~p~~~~i 530 (837)
+||+=+--=..+. ...+. .-+.|++.+++.+++ .|+..++
T Consensus 100 FDGw~iN~E~~~~-------------------~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 100 FDGWLINIETPLS-------------------GPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp --EEEEEEEESST-------------------TGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred CCceEEEecccCC-------------------chhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 9999765322110 00122 234899999999999 8876555
No 166
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.21 E-value=1.6e+02 Score=32.80 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.||+|++++|++|-++++-+- |.+..
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~--h~G~~ 108 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLN--HPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcc--CCCcC
Confidence 78999999999999999998865 55554
No 167
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=49.57 E-value=74 Score=34.16 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHH
Q 003226 383 CGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 462 (837)
Q Consensus 383 ~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l 462 (837)
.+...++.+=|.+|++.|++|||=| . |.. .+ . |. .. -.+++-|+.+++++
T Consensus 55 ~~~~~~~~~~i~~~~~~g~KVllSi--G--------G~~--~~---~-fs-------------~~-a~~~~~r~~f~~s~ 104 (256)
T cd06546 55 HPRFTTLWTELAILQSSGVKVMGML--G--------GAA--PG---S-FS-------------RL-DDDDEDFERYYGQL 104 (256)
T ss_pred cchhhHHHHHHHHHHhCCCEEEEEE--C--------CCC--CC---C-cc-------------cc-cCCHHHHHHHHHHH
Confidence 3333456666778899999999853 1 000 00 0 11 01 13455566667778
Q ss_pred HHHHHHcCCCeEEecc
Q 003226 463 RWWLEEYKFDGFRFDG 478 (837)
Q Consensus 463 ~~Wl~e~gvDGfR~D~ 478 (837)
.-++++|++||+-||-
T Consensus 105 ~~~~~~~~~DGiDiDw 120 (256)
T cd06546 105 RDMIRRRGLDGLDLDV 120 (256)
T ss_pred HHHHHHhCCCceEEee
Confidence 8888889999999984
No 168
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=49.42 E-value=30 Score=36.86 Aligned_cols=48 Identities=33% Similarity=0.488 Sum_probs=35.0
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
++-|.++|+||+++|+++- |.- .+ +.++..++|+.+.++|++|+--+=
T Consensus 87 ~~yl~~~k~lGf~~IEiSd----------Gti-----~l-----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISD----------GTI-----DL-----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHCT-SEEEE------------SSS-------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEecC----------Cce-----eC-----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 4678999999999999753 111 11 268899999999999999997753
No 169
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=48.83 E-value=53 Score=29.92 Aligned_cols=60 Identities=20% Similarity=0.495 Sum_probs=39.3
Q ss_pred EEEEEeCCC--cCEEEEEee---cCCCCCC-ccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003226 205 ITYREWAPG--AKSASLIGD---FNNWNPN-ADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 205 v~fr~WAP~--A~~V~L~gD---fn~w~~~-~~~m~r~----~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~ 270 (837)
|+|++=+++ -+.|+|+|+ +.+|+.. +.+|... +.++|++.+.-.. +. ...|||.+...++
T Consensus 9 V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~-~~-----~veYKy~~~~~~~ 78 (106)
T cd05811 9 VTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPA-GT-----SFEYKFIRKESDG 78 (106)
T ss_pred EEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCC-CC-----cEEEEEEEEcCCC
Confidence 677765443 367999997 4579864 5788653 3588998886432 21 3578888755443
No 170
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=48.58 E-value=1.7e+02 Score=33.21 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~ 109 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAH 109 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCC
Confidence 78999999999999999999876 66553
No 171
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=46.87 E-value=15 Score=40.56 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=36.3
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+-|+...+.|++-|... +..... | +=+-..-|++|++.||+.||+||+||-+.
T Consensus 20 ~Yi~~~~~~Gf~~IFts-l~~~~~---~------------~~~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 20 AYIDRMHKYGFKRIFTS-LLIPEE---D------------AELYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHHHcCccceeee-cccCCc---h------------HHHHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 46777788999998532 221111 0 00124569999999999999999998764
No 172
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=46.71 E-value=51 Score=36.50 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCc-hHHHHHHHHHHhhhcc
Q 003226 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDMIHGL 523 (837)
Q Consensus 450 ~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~a~~fl~~~~~~v~~~ 523 (837)
.+++.|+.+++++.-|++++++||+-+|--. .. . .+ .+. .-..|++++++.+++.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~-~~------------~----~~--~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEY-PG------------A----RG--DDRENYTALLKELREALDKE 142 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcC-CC------------C----Cc--cHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999421 10 0 00 111 2346889999888764
No 173
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=46.55 E-value=51 Score=36.50 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEecc
Q 003226 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 450 ~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
.+++.|+.+++++..|++++++||+=+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46788999999999999999999999984
No 174
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=45.63 E-value=46 Score=37.40 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCch-HHHHHHHHHHhhhccCCCeE
Q 003226 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAV 528 (837)
Q Consensus 450 ~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~fl~~~~~~v~~~~p~~~ 528 (837)
.++..|+.+++++..|+++|++||+-+|--. . ... .+...+.+ -+.|++++++.+++..++..
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~-p------------~~~---~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEY-P------------GQR---GGPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeec-c------------ccC---CCCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 4578889899999999999999999998321 0 000 00011222 24688999999877644433
No 175
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=45.51 E-value=70 Score=28.89 Aligned_cols=58 Identities=14% Similarity=0.257 Sum_probs=36.7
Q ss_pred EEEEEeCCC--cCEEEEEee---cCCCCCC-ccccccC---CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003226 205 ITYREWAPG--AKSASLIGD---FNNWNPN-ADIMTQN---EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 268 (837)
Q Consensus 205 v~fr~WAP~--A~~V~L~gD---fn~w~~~-~~~m~r~---~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~ 268 (837)
++|++-+.+ -+++.|+|+ +.+|+.. +.+|... +...|++.+.... + ....|||.+...
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~-----~~veYky~v~~~ 68 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-G-----FSSEYNYYVVDD 68 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-C-----CcEEEEEEEEcC
Confidence 466655433 378899985 5679864 5788532 3348988876432 2 136899987543
No 176
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=45.45 E-value=2.9e+02 Score=31.23 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 78 i~~~~~lad~vH~~Ga~i~~QL~--H~Gr~ 105 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQLW--HTGRI 105 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEecc--CCCCC
Confidence 68899999999999999999765 66554
No 177
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=44.44 E-value=3.3e+02 Score=30.33 Aligned_cols=68 Identities=18% Similarity=0.111 Sum_probs=40.5
Q ss_pred hhhhhHHHH---cCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 341 DDVLPRIKR---LGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 341 ~~~LdyLk~---LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
++.+.|.++ =|+..|..-.+.-++....+.+++.-+ +. .-.+.||+|++++|+.|-++++-+. |.+..
T Consensus 33 ~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~---~d--~~~~~~~~l~~~vh~~G~~~~~QL~--H~G~~ 103 (336)
T cd02932 33 DWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLW---ND--EQIEALKRIVDFIHSQGAKIGIQLA--HAGRK 103 (336)
T ss_pred HHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeec---CH--HHHHHHHHHHHHHHhcCCcEEEEcc--CCCcC
Confidence 345555443 577777665555444322122222111 01 1368999999999999999999876 45443
No 178
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=44.40 E-value=54 Score=36.13 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCch-HHHHHHHHHHhhhcc
Q 003226 451 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 523 (837)
Q Consensus 451 ~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~fl~~~~~~v~~~ 523 (837)
+++-|+.+++++.-|+++||+||+-||-=..... +...+.+ -..|++++++.+++.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~-----------------~~~~~~~~~~~~l~~L~~~l~~~ 152 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSS-----------------GDPQDKDNYTAFLKELRKALKRA 152 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTST-----------------SSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeecccc-----------------ccchhhhhhhhhhhhhhhhhccc
Confidence 4677889999999999999999999985321100 0001122 246889999888874
No 179
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=43.10 E-value=47 Score=39.24 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=46.4
Q ss_pred HhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCC-EEEEeeccCC
Q 003226 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSH 411 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI-~VIlDvV~NH 411 (837)
.+++|..|+++|++.|.|.+ +.. +..-.-.+ .|-.|.+++.+.++.|++.|+ .|-+|+.+.-
T Consensus 268 t~e~L~~Lk~~Gv~RISIGv-QS~--------~d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GL 330 (488)
T PRK08207 268 TEEKLEVLKKYGVDRISINP-QTM--------NDETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGL 330 (488)
T ss_pred CHHHHHHHHhcCCCeEEEcC-CcC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 45799999999999998655 211 11112233 455789999999999999999 7889999753
No 180
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=82 Score=34.40 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=77.3
Q ss_pred HhhHhhhhhHHHHcCCCEEEECCccccC-CCCCCCCcccccccCCCCCCC---HHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFAPSSRCGT---PDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~-~~~s~GY~~~~y~avd~~~Gt---~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
++..++++.-||+.|+|++- .+.. .++.--|.-.|-+ ....++ --|.+.+|+.|.++||.+|.-+|.=--
T Consensus 76 kk~~de~fk~ikdn~~Na~V----iD~Kdd~G~lty~s~d~~--~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD 149 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFV----IDVKDDYGELTYPSSDEI--NKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKD 149 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEE----EEecCCCccEeccccchh--hhhhhccccccccHHHHHHHHhcCeEEEEEEEEeee
Confidence 34556899999999999984 3332 2233345544421 112222 467889999999999999999885211
Q ss_pred CCCc---cccccCCC-CCCCcccccC-----CCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEecccc
Q 003226 413 SNNV---LDGLNMFD-GTDGHYFHSG-----SRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 413 s~~~---~~~~~~fd-g~~~~yf~~~-----~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
..-. ..-+..+. |.+..-|..+ ..+.|| .+--++.+++|=+.+++--++ +|+|-..||-+-
T Consensus 150 ~~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehW------Vd~y~~~~WeYNvtIAKEa~~-fGfdEiQFDYIR 219 (400)
T COG1306 150 TILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHW------VDAYDKNLWEYNVTIAKEAAK-FGFDEIQFDYIR 219 (400)
T ss_pred eeEEeecCceEEEEcCCCcchhhhcccccccccceee------ecccchhhhhhhHHHHHHHHH-cCccceeeeEEE
Confidence 1000 00000011 1111111111 112232 345578899999999999888 999999999764
No 181
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=42.03 E-value=1.2e+02 Score=35.75 Aligned_cols=104 Identities=12% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 332 ~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.+..|.-+. +-+.-+++||+|+.-+.=-+.--. . -|.. -. ..-...+=.++||++|+++||.+|+.+.|
T Consensus 66 A~D~Yhry~-eDi~l~~~lG~~~yR~si~WsRi~-P-~g~~----~~--~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H-- 134 (474)
T PRK09852 66 AIDFYHRYK-EDIALMAEMGFKVFRTSIAWSRLF-P-QGDE----LT--PNQQGIAFYRSVFEECKKYGIEPLVTLCH-- 134 (474)
T ss_pred cCchhhhhH-HHHHHHHHcCCCeEEeeceeeeee-e-CCCC----CC--CCHHHHHHHHHHHHHHHHcCCEEEEEeeC--
Confidence 445676666 689999999999987643222100 0 0100 00 11123567889999999999999999763
Q ss_pred CCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003226 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~g 470 (837)
.. -|.++..... -|.++++.+++.+-++..+++||
T Consensus 135 ~~-------------~P~~l~~~~G-----------GW~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 135 FD-------------VPMHLVTEYG-----------SWRNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred CC-------------CCHHHHHhcC-----------CCCCHHHHHHHHHHHHHHHHHhc
Confidence 21 1223321111 23457888888888888888775
No 182
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=41.44 E-value=1.1e+02 Score=27.92 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=40.3
Q ss_pred cEEEEEeCC----CcCEEEEEee---cCCCCCCc---c-ccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003226 204 GITYREWAP----GAKSASLIGD---FNNWNPNA---D-IMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 204 gv~fr~WAP----~A~~V~L~gD---fn~w~~~~---~-~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~ 270 (837)
-|+|++=+. --+.++|+|+ +.+|+... . +|.......|++.++.. .|. -..|||.+...++
T Consensus 4 ~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp-~~~-----~veyK~v~~~~~g 75 (103)
T cd05820 4 PVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVP-AGT-----YIEFKFLKAPADG 75 (103)
T ss_pred cEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcC-CCC-----cEEEEEEEECCCC
Confidence 367887643 2368999986 56898642 2 77766778999888643 222 3578888765443
No 183
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.22 E-value=44 Score=35.88 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=35.5
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
+.++.++++|++.|+|.+...+. ...+.+ + +.++++++.+.+.+.||+|..
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~-----~~~~~~-------~-~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDE-----RLARLD-------W-SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCccc-----cccccc-------C-CHHHHHHHHHHHHHcCCCceE
Confidence 68999999999999995421110 001111 1 457889999999999999873
No 184
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=40.87 E-value=57 Score=35.74 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCch-HHHHHHHHHHhhhcc
Q 003226 449 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 523 (837)
Q Consensus 449 ~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-a~~fl~~~~~~v~~~ 523 (837)
..+++.|+.+++++..+++++|+||+-+|-- .+. ..+.+ -..|++++++.+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E-~~~--------------------~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE-ELP--------------------ADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC-CCC--------------------hhHHHHHHHHHHHHHHHhhhc
Confidence 3568889999999999999999999999962 110 01112 246899999999875
No 185
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=40.81 E-value=52 Score=37.11 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=46.7
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccCCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
++.|..|+++|+|.|.|- |+.. +..-+-.+ .|-.+.++..+.|+.|++.|+. |-+|+.++.-..
T Consensus 100 ~e~l~~l~~~Gv~risiG-vqS~--------~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-VQSF--------RDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-cccC--------ChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 468999999999998653 2211 12222234 5667899999999999999996 789999875443
No 186
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=40.43 E-value=49 Score=36.53 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEecc
Q 003226 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 450 ~~~eVr~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
.+++.|+.+++++..+++++|+||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 56888999999999999999999999983
No 187
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=40.06 E-value=40 Score=37.38 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=43.5
Q ss_pred hhhhhHHHHcCCC-EEEECCccccCCCCCCCCccccc-ccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 341 DDVLPRIKRLGYN-AVQIMAVQEHSYYASFGYHVTNF-FAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 341 ~~~LdyLk~LGvt-~I~L~Pi~e~~~~~s~GY~~~~y-~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
++.|..|+++|++ .|.|-. . +.. ..-. ..++-.+ |.+++.+.++.+|++||.|.+++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~-E-S~~-------d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL-E-TAN-------DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec-C-cCC-------HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4789999999998 576532 1 111 1112 1344444 89999999999999999999999875
No 188
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=39.78 E-value=56 Score=35.86 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEec
Q 003226 450 GSWEVLRFLLSNARWWLEEYKFDGFRFD 477 (837)
Q Consensus 450 ~~~eVr~~l~~~l~~Wl~e~gvDGfR~D 477 (837)
.+++.|+.+++++.-++++||+||+-+|
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiD 115 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLD 115 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeec
Confidence 5688899999999999999999999998
No 189
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=39.65 E-value=3e+02 Score=30.91 Aligned_cols=28 Identities=14% Similarity=0.449 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.||+|++++|++|-++++-+ +|.+..
T Consensus 76 i~~~~~l~~~vh~~g~~~~~Ql--~H~G~~ 103 (343)
T cd04734 76 IPGFRRLAEAVHAHGAVIMIQL--THLGRR 103 (343)
T ss_pred HHHHHHHHHHHHhcCCeEEEec--cCCCcC
Confidence 5789999999999999999965 455543
No 190
>PLN02411 12-oxophytodienoate reductase
Probab=39.52 E-value=2.9e+02 Score=31.64 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.+|+|++++|++|-++++-+. |.+..
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL~--H~Gr~ 113 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQLW--HVGRA 113 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCC
Confidence 68899999999999999999876 55543
No 191
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=39.18 E-value=27 Score=38.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee
Q 003226 385 TPDDLKSLIDKAHELGLLVLMDI 407 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDv 407 (837)
++++++++.+-||++||.|.||-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEeh
Confidence 37999999999999999999994
No 192
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=38.64 E-value=52 Score=39.56 Aligned_cols=59 Identities=22% Similarity=0.239 Sum_probs=42.2
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
+++|..+|++|.|+|+--=.+-- |--.+.. -.|.+.-||.+||+.||+.|+-|||=+=+
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn~-----Hep~~g~-----y~FsG~~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWNL-----HEPSPGK-----YDFSGRYDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred HHHHHHHHhcCCceeeeeeeccc-----ccCCCCc-----ccccchhHHHHHHHHHHHCCeEEEecCCC
Confidence 46889999999999985333220 1000111 14677889999999999999999998654
No 193
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=38.62 E-value=4.5e+02 Score=28.67 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=35.8
Q ss_pred hHHHHcCCCEEEECCccccCCCCCCCCcccccccCC--CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 003226 345 PRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS--SRCGTPDDLKSLIDKAHELGLLVLMD 406 (837)
Q Consensus 345 dyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd--~~~Gt~edfk~LV~~aH~~GI~VIlD 406 (837)
.|..+-.|+.|-|.=+..++. -|+-..||-... ..++.-.+|.+-|+.|+++|++|||=
T Consensus 18 ~~C~~~~~dii~i~Fl~~~~~---~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 18 EYCDTGNYDIVNISFLNVFGS---GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred HHhCCCCccEEEEEeEcccCC---CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 344555688886655554443 233333332221 11113468999999999999999995
No 194
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=37.79 E-value=39 Score=38.29 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=46.9
Q ss_pred HhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccCCCCC
Q 003226 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
.++.|..|+++|+|.|.|- |+... ..-.-.+ .+-.+.++..+.++.+++.|+. |-+|++++.-+.
T Consensus 107 ~~e~l~~l~~~G~~rvslG-vQS~~--------~~~L~~l-~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLG-MQSAA--------PHVLAVL-DRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred CHHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 3579999999999999753 33211 1111122 3556889999999999999999 999999876543
No 195
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=37.68 E-value=70 Score=34.69 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=44.2
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
++.+..||++|++.|.+. +| . ++.-|-.+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~-------~~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-T-------SQEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-C-------CHHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 478999999999999886 33 1 12222334333 5789999999999999999988877653
No 196
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.48 E-value=1.6e+02 Score=32.53 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCC---HHHHHHHHHHH
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGS---WEVLRFLLSNA 462 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~---~eVr~~l~~~l 462 (837)
.+.+|+|++++|+.|-++++-+ +|.+....... .+.. . +.............+ --... .++.+.+.+++
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~~---~~~~-~-~~~s~~~~~~~~~~~-~~mt~~ei~~~i~~~~~aA 147 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPNL---TGGP-P-PAPSAIPSPGGGEPP-REMTKEEIEQIIEDFAAAA 147 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCcC---CCCC-c-cCCCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHH
Confidence 6899999999999999998776 55554421111 1100 0 000000000000000 01122 24445555667
Q ss_pred HHHHHHcCCCeEEecccc
Q 003226 463 RWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 463 ~~Wl~e~gvDGfR~D~v~ 480 (837)
+...+ .|+||+-+.++.
T Consensus 148 ~~a~~-aGfDgveih~~~ 164 (327)
T cd02803 148 RRAKE-AGFDGVEIHGAH 164 (327)
T ss_pred HHHHH-cCCCEEEEcchh
Confidence 77766 899999999874
No 197
>PRK01060 endonuclease IV; Provisional
Probab=36.84 E-value=69 Score=34.38 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=36.9
Q ss_pred hHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEE
Q 003226 339 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 403 (837)
Q Consensus 339 ~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~V 403 (837)
+. +.|+.++++|+++|+|.+--.+ .+. +..-+++++++|.+.+.+.||++
T Consensus 14 ~~-~~l~~~~~~G~d~vEl~~~~p~------~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LE-GAVAEAAEIGANAFMIFTGNPQ------QWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred HH-HHHHHHHHcCCCEEEEECCCCC------CCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 44 6899999999999999653211 111 11237889999999999999985
No 198
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=36.40 E-value=44 Score=38.73 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=45.5
Q ss_pred HhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEE-EeeccCCCCCC
Q 003226 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL-MDIVHSHASNN 415 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VI-lDvV~NH~s~~ 415 (837)
.++.|..|+++|++.|.|- |+... ..-...+. |--+.++..+.|+.||+.||.+| +|+.++.-..+
T Consensus 140 t~e~l~~l~~~G~~rvslG-vQS~~--------~~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIG-VQSFH--------DSELHALH-RPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred CHHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 3578999999999998652 22211 11112222 22378999999999999999865 99998766544
No 199
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=36.33 E-value=36 Score=38.72 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=42.2
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCC---HHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT---PDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt---~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
|-..+. +.+..-+++|.+.==|+=+ .|...+|| +++|..|++=|.+++|.||.|=|+.-
T Consensus 209 tv~alE-~A~~~A~~~~~kVkGvlit-----------------NPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~ 270 (471)
T KOG0256|consen 209 TVEALE-AALNQARKLGLKVKGVLIT-----------------NPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAG 270 (471)
T ss_pred cHHHHH-HHHHHHHHhCCceeEEEEe-----------------CCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcc
Confidence 344444 5777778888765322111 12234565 89999999999999999999999865
Q ss_pred CC
Q 003226 412 AS 413 (837)
Q Consensus 412 ~s 413 (837)
+.
T Consensus 271 sV 272 (471)
T KOG0256|consen 271 SV 272 (471)
T ss_pred cc
Confidence 53
No 200
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=36.09 E-value=1.3e+02 Score=26.71 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=35.7
Q ss_pred EEEEEe--CCCcCEEEEEee---cCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003226 205 ITYREW--APGAKSASLIGD---FNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 205 v~fr~W--AP~A~~V~L~gD---fn~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~~~ 270 (837)
++|++= ..--+.++|+|+ +.+|+. +.+|.-. .+.|++.+.-.. +. ...|||.+...++
T Consensus 4 v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~-~~~l~~~-~~~W~~~~~l~~-~~-----~ieyKy~~~~~~~ 66 (92)
T cd05818 4 LQVRLDHQVKFGEHVAILGSTKELGSWKK-KVPMNWT-ENGWVCDLELDG-GE-----LVEYKFVIVKRDG 66 (92)
T ss_pred EEEEEEEEcCCCCEEEEEeChHHHCCCCC-CCccccC-CCCEEEEEEeCC-CC-----cEEEEEEEEcCCC
Confidence 455543 233468899986 468984 4577654 467988775322 21 3578988765443
No 201
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=35.93 E-value=84 Score=32.81 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=40.7
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCC--CC--CCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYA--SF--GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~--s~--GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
+....|+++|+..|.|+|.+...... .. -|...+.-. =+.++++++.+.+.++|+.|++
T Consensus 149 ~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~-----~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 149 QALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPA-----PSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCCCC-----cCHHHHHHHHHHHHHcCCeEEe
Confidence 56678889999999999987643211 01 122222112 2578999999999999999975
No 202
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.93 E-value=3.7e+02 Score=30.20 Aligned_cols=129 Identities=14% Similarity=0.155 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCH---HHHHHHHHHH
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSW---EVLRFLLSNA 462 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~---eVr~~l~~~l 462 (837)
.+.+|+|++++|++|=++++-+. |.+........ .+.. . +....-..........--.... ++.+.+.+++
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL~--h~G~~~~~~~~--~~~~-~-~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQIF--HAGRMANPALV--PGGD-V-VSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEec--CCCCCCCcccc--CCCc-e-ecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 78999999999999999987654 55543211100 0100 0 0000000000000000011222 3444445566
Q ss_pred HHHHHHcCCCeEEecccccccccccCccccccCCcccccCcccCchHHHHHHHHHHhhhccC
Q 003226 463 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 524 (837)
Q Consensus 463 ~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~a~~fl~~~~~~v~~~~ 524 (837)
+.-.+ .|+||.-+-+++..+-... +.+.+...-++| |+. -.....|+.++.+.|++.-
T Consensus 151 ~~a~~-aGfDgVeih~ahGyLl~qF-lsp~~N~R~D~y-GGs-lenR~r~~~eii~~vr~~v 208 (353)
T cd04735 151 RRAIE-AGFDGVEIHGANGYLIQQF-FSPHSNRRTDEW-GGS-LENRMRFPLAVVKAVQEVI 208 (353)
T ss_pred HHHHH-cCCCEEEEccccchHHHHh-cCCccCCCCccc-CCc-HHHHHHHHHHHHHHHHHHh
Confidence 66544 8999999998754322110 011111112233 333 2234567777777777654
No 203
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=35.75 E-value=3.8e+02 Score=30.05 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=73.8
Q ss_pred HHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCC
Q 003226 347 IKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGT 426 (837)
Q Consensus 347 Lk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~ 426 (837)
.++=|+..|..-.+.-++....+.+++.- + +. .-...||+|++++|++|-++++-+. |.+.... ..+.
T Consensus 46 rA~gG~GlIi~~~~~v~~~~~~~~~~~~~-~--~d--~~i~~~r~l~d~vh~~G~~i~~QL~--H~G~~~~-----~~~~ 113 (337)
T PRK13523 46 RAAGQVGLVIVEATAVLPEGRISDKDLGI-W--DD--EHIEGLHKLVTFIHDHGAKAAIQLA--HAGRKAE-----LEGD 113 (337)
T ss_pred HHcCCCeEEEECCeEECccccCCCCceec-C--CH--HHHHHHHHHHHHHHhcCCEEEEEcc--CCCCCCC-----CCCC
Confidence 44567888866655554432111111110 0 11 1268999999999999999999875 4444321 0110
Q ss_pred CCcccccCCCCCcccCCCcCCCCCCHHH---HHHHHHHHHHHHHHcCCCeEEecccccccccccCccccccCC----ccc
Q 003226 427 DGHYFHSGSRGYHWMWDSRLFNYGSWEV---LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGN----YSE 499 (837)
Q Consensus 427 ~~~yf~~~~~g~~~~w~~~~ln~~~~eV---r~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~----~~~ 499 (837)
. ..............+ -.....|+ .+-+..+++.-.+ .|+||.-+-+++..+- ..|... -.+
T Consensus 114 --~-~~ps~~~~~~~~~~p-~~mt~eeI~~ii~~f~~aA~~a~~-aGfDgVeih~ahGyLl------~qFlSp~~N~RtD 182 (337)
T PRK13523 114 --I-VAPSAIPFDEKSKTP-VEMTKEQIKETVLAFKQAAVRAKE-AGFDVIEIHGAHGYLI------NEFLSPLSNKRTD 182 (337)
T ss_pred --c-cCCCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHH------HHhcCCccCCcCC
Confidence 0 000000000000000 01222333 3333345555545 8999999998853321 122221 122
Q ss_pred ccCcccCchHHHHHHHHHHhhhcc
Q 003226 500 YFGFATDVDAVVYLMLVNDMIHGL 523 (837)
Q Consensus 500 ~~g~~~d~~a~~fl~~~~~~v~~~ 523 (837)
.||+. -.....|+.++.+.|++.
T Consensus 183 ~yGGs-lenR~Rf~~eii~~ir~~ 205 (337)
T PRK13523 183 EYGGS-PENRYRFLREIIDAVKEV 205 (337)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHh
Confidence 33433 223456777777777664
No 204
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=35.49 E-value=58 Score=30.45 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=40.9
Q ss_pred EeCCcEEEEEeCC--CcCEEEEE-eecCCC----CCCcccccc----CCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003226 200 RSDTGITYREWAP--GAKSASLI-GDFNNW----NPNADIMTQ----NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 200 ~~~~gv~fr~WAP--~A~~V~L~-gDfn~w----~~~~~~m~r----~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~ 267 (837)
..++.+++|+++. .+++|.|+ +|-.+| .....+|++ .....|+++|+.... -.+|.|.|.+
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-------r~~Y~F~l~~ 89 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-------RLRYYFELED 89 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-------EEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-------eEEEEEEEEe
Confidence 3556788999865 56899987 565544 223457875 357899999986422 2578888877
No 205
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=34.95 E-value=45 Score=37.60 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=45.4
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s 413 (837)
++.|..|+++|+|.|.| +|+... ..-.-.+ .|-.+.++..+.|+.|++.|+. |-+|+.++.-+
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~--------d~vL~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMN--------NNILKQL-NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 47999999999999864 344221 1111122 3446899999999999999997 88999987543
No 206
>PRK07094 biotin synthase; Provisional
Probab=34.51 E-value=67 Score=35.49 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=44.6
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
++.+..|++.|++.|.+ .+- + .+..-|-.+.+ -.+.++..+.++.||+.||.|-.++++.+
T Consensus 129 ~e~l~~Lk~aG~~~v~~-glE-s-------~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGl 189 (323)
T PRK07094 129 YEEYKAWKEAGADRYLL-RHE-T-------ADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGL 189 (323)
T ss_pred HHHHHHHHHcCCCEEEe-ccc-c-------CCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEEC
Confidence 46889999999999874 222 1 12233334444 36789999999999999999988888754
No 207
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.86 E-value=78 Score=33.83 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=34.1
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 404 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VI 404 (837)
+.|+.++++||++|+|..-.. ..| .. . .+.+++++|.+.+.+.||+|.
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~-----------~~~-~~--~-~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRP-----------HAF-AP--D-LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCc-----------ccc-cc--c-cCchHHHHHHHHHHHcCCeEE
Confidence 799999999999999843111 111 11 1 134678899999999999984
No 208
>PRK15447 putative protease; Provisional
Probab=33.68 E-value=83 Score=34.65 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=37.2
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003226 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 334 G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
|++..|. -.|++.|+++|+|--.. ++-. ..| +.+++++.|+.||++|.+|.+
T Consensus 15 ~~~~~~~----~~~~~~gaDaVY~g~~~-~~~R--------------~~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 15 ETVRDFY----QRAADSPVDIVYLGETV-CSKR--------------REL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCHHHHH----HHHHcCCCCEEEECCcc-CCCc--------------cCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 4554444 46889999999987211 1110 012 679999999999999999988
No 209
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=32.71 E-value=3.9e+02 Score=30.35 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCC
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
.+.||++++++|+.|=++++-+. |.+
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~--H~G 107 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLW--HAG 107 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEec--cCc
Confidence 68899999999999999999875 555
No 210
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=32.14 E-value=4.2e+02 Score=28.95 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHH
Q 003226 387 DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWL 466 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl 466 (837)
+.++++|+.|+++|+.|..-+.+..... +++. .. -+++++.++-..
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~~--------~~~~-----------------------~~---~~~~~~~~~~~~ 165 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGCP--------YEGE-----------------------VP---PEAVADVAERLF 165 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecCC--------CCCC-----------------------CC---HHHHHHHHHHHH
Confidence 4588888888888888876655421111 1110 00 267888888888
Q ss_pred HHcCCCeEEe-ccc
Q 003226 467 EEYKFDGFRF-DGV 479 (837)
Q Consensus 467 ~e~gvDGfR~-D~v 479 (837)
+ .|+|.+++ |.+
T Consensus 166 ~-~G~d~i~l~DT~ 178 (287)
T PRK05692 166 A-LGCYEISLGDTI 178 (287)
T ss_pred H-cCCcEEEecccc
Confidence 7 89998887 444
No 211
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=31.25 E-value=1.2e+02 Score=27.44 Aligned_cols=49 Identities=18% Similarity=0.376 Sum_probs=33.2
Q ss_pred cCEEEEEee---cCCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003226 214 AKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 268 (837)
Q Consensus 214 A~~V~L~gD---fn~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~yk~~~~~~ 268 (837)
-+.|+|+|+ +.+|+.. +.+|.......|++.|+... +. ...|||.+...
T Consensus 15 Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~-~~-----~veyKyv~~~~ 67 (97)
T cd05810 15 GQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPA-ST-----NVEWKCLKRNE 67 (97)
T ss_pred CCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCC-CC-----eEEEEEEEEcC
Confidence 368899986 4589863 56787777789998886422 21 35788866543
No 212
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=31.22 E-value=5.1e+02 Score=29.07 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
-.+.||+|++++|+.|-++++-+. |.+..
T Consensus 75 ~i~~~~~l~~~vh~~g~~~~~QL~--h~G~~ 103 (353)
T cd02930 75 QAAGHRLITDAVHAEGGKIALQIL--HAGRY 103 (353)
T ss_pred HHHHHHHHHHHHHHcCCEEEeecc--CCCCC
Confidence 378999999999999999999876 55543
No 213
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=31.12 E-value=70 Score=37.33 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=46.8
Q ss_pred HhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCC-EEEEeeccCCCCCC
Q 003226 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSHASNN 415 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI-~VIlDvV~NH~s~~ 415 (837)
.++.|..|+++|++.|.|- |... +..-.-.+ .+-.+.++..+.++.+++.|| .|-+|+.++.-+.+
T Consensus 150 t~e~l~~l~~aG~~risiG-vqS~--------~~~~L~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLG-VQDF--------DPEVQKAV-NRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred CHHHHHHHHHcCCCEEEEC-CCCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 3579999999999998653 2211 11111222 344689999999999999999 89999988755443
No 214
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=31.01 E-value=78 Score=35.59 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=45.6
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s 413 (837)
+++|..++++|||.|.| .|+... ..-.-.+ .|-.+.++..+.|+.+++.|+. |-+|+.++--+
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~--------~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFN--------EDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 47999999999999963 444321 1112223 4556799999999999999996 66999986543
No 215
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=30.89 E-value=1.3e+02 Score=24.63 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=32.3
Q ss_pred EEEEEECCCCCcccceEEeccCCce-EEEEEeCCCCccCCccccCCCcccccccCccCCCCeEEEEEECCceEEEEE
Q 003226 751 LVFVFNFHWNSSYSDYRVGCLKPGK-YKIVLDSDYPLFGGYKRLDHNAEYFSSEGWYDDRPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 751 llvv~Nf~~~~~~~~~~i~v~~~g~-~~~vl~sd~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~l~Lp~~s~~Vl~ 826 (837)
|+|++|.++ ......|+...+|+ |.+++. ... ... + -+.++...+.+||++..||.
T Consensus 1 L~v~iN~~~--~~k~~~Vgt~~ag~~~~D~tG--------n~~----~~v-t-----id~dG~~~f~v~~~s~SVWs 57 (57)
T PF09154_consen 1 LAVYINGSA--GWKRMWVGTNWAGKTFYDYTG--------NSS----ETV-T-----IDEDGWGEFPVPPGSVSVWS 57 (57)
T ss_dssp EEEEEE-SS--SEEEEEEEGGGTTEEEEETTS--------SSS----SEE-E-----E-TTSEEEEEE-TTEEEEEE
T ss_pred CEEEEeCCC--CeEEEEEccccCCCEEEEccC--------CCC----CeE-E-----ECCCeEEEEEECCCEEEEeC
Confidence 567779884 45667788777764 555432 110 011 1 12345688999999999984
No 216
>PRK06256 biotin synthase; Validated
Probab=30.82 E-value=71 Score=35.51 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=44.6
Q ss_pred HhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.++.+..||+.|++.|.+. .|+ . ..-|-.+.+. .+.++..+.++.||+.||.|...+++.+
T Consensus 151 ~~e~l~~LkeaG~~~v~~~--lEt-s-------~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHN--LET-S-------RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred CHHHHHHHHHhCCCEEecC--Ccc-C-------HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 3478899999999999763 232 1 2223344443 4789999999999999999988877754
No 217
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=30.80 E-value=4.3e+02 Score=33.09 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHc-CCEEEEeeccCCCCCCc
Q 003226 386 PDDLKSLIDKAHEL-GLLVLMDIVHSHASNNV 416 (837)
Q Consensus 386 ~edfk~LV~~aH~~-GI~VIlDvV~NH~s~~~ 416 (837)
.+.+|++++++|+. |-++++-+ +|.+...
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~ 503 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKG 503 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccc
Confidence 68899999999999 68998886 6666543
No 218
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=30.26 E-value=70 Score=36.27 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=45.3
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccCCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
++.|..|+++|+|.|.|- |... +..-+-.+ .+-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 100 ~e~l~~l~~~G~~rvsiG-vqS~--------~~~~l~~l-~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLG-VQTF--------NDELLKKI-GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEe-cccC--------CHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 468999999999998653 2221 11122222 3556789999999999999998 678998875543
No 219
>PRK05660 HemN family oxidoreductase; Provisional
Probab=29.66 E-value=1e+02 Score=35.04 Aligned_cols=65 Identities=25% Similarity=0.363 Sum_probs=46.7
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEE-EeeccCCCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL-MDIVHSHASNN 415 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VI-lDvV~NH~s~~ 415 (837)
.++|..|+++|+|.|.|-. +. .+..-+-.+ .+..+.++..+-|+.|++.|+..| +|+.+.....+
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-qS--------~~~~~L~~l-~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-QS--------FSEEKLKRL-GRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-Cc--------CCHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 3689999999999997632 21 122222333 355789999999999999999764 99998765543
No 220
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=28.87 E-value=79 Score=35.75 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=45.6
Q ss_pred HhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccCCCCC
Q 003226 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
.++.|..|+++|++.|.|-- +... ..-.-.+ .+-.+.++..+-|+.+++.|+. |-+|+.++.-+.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv-qS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL-QAWQ--------NSLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC-ccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 35799999999999986533 2211 1111223 3555799999999999999997 779998875443
No 221
>PRK15452 putative protease; Provisional
Probab=28.67 E-value=1.1e+02 Score=35.76 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=33.1
Q ss_pred hhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003226 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 343 ~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
.|...-+.|.++|++-.-. + ++.-...+ | +.++|++.|+.||++|++|.+
T Consensus 15 ~l~aAi~~GADaVY~G~~~-~----~~R~~~~~-------f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPR-Y----SLRVRNNE-------F-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHCCCCEEEECCCc-c----chhhhccC-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 4445567899999983311 1 11101112 2 468999999999999999977
No 222
>PRK12928 lipoyl synthase; Provisional
Probab=28.60 E-value=1.3e+02 Score=32.99 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=46.3
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 406 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlD 406 (837)
|...+. +.|..|+++|++.|.+.+... |. -..-+=.+|=+|++|+.+-+.|.+.|.+-+.-
T Consensus 217 T~ed~~-etl~~Lrel~~d~v~i~~Yl~-p~---------~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~ 277 (290)
T PRK12928 217 TEDEVI-ETLRDLRAVGCDRLTIGQYLR-PS---------LAHLPVQRYWTPEEFEALGQIARELGFSHVRS 277 (290)
T ss_pred CHHHHH-HHHHHHHhcCCCEEEEEcCCC-CC---------ccCCceeeccCHHHHHHHHHHHHHcCCceeEe
Confidence 567777 699999999999998776543 21 11233367889999999999999999876553
No 223
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.59 E-value=74 Score=37.15 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=46.0
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccCCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
++.|..|+++|+|.|.|-. +.. +..-.-.+ .+-.+.++..+.|+.|++.|+. |-+|+.+..-+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~--------~~~vl~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDF--------DPQVQKAI-NRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ 216 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC
Confidence 4799999999999997643 211 11112223 3457899999999999999997 889998865443
No 224
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=28.49 E-value=5.5e+02 Score=31.73 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=73.6
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHH-HHHHHHHHH-HcCCEEEEeeccCCCCCCccc
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD-LKSLIDKAH-ELGLLVLMDIVHSHASNNVLD 418 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~ed-fk~LV~~aH-~~GI~VIlDvV~NH~s~~~~~ 418 (837)
+..|++|+++|+|+|+|-.+.+..+.+. +.-.|=++.++=-.+| |-+..=.++ +.|++|..-+..--+.-..
T Consensus 337 ~~l~~ri~~~~~~~VyLqafadp~gdg~----~~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~-- 410 (672)
T PRK14581 337 DKLVQRISDLRVTHVFLQAFSDPKGDGN----IRQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDP-- 410 (672)
T ss_pred HHHHHHHHhcCCCEEEEEeeeCCCCCCc----eeeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCc--
Confidence 3688999999999999999987655432 2233334444444444 455535555 5599999887653221100
Q ss_pred cccCCCCCCCcccccCCC-CCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEec
Q 003226 419 GLNMFDGTDGHYFHSGSR-GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFD 477 (837)
Q Consensus 419 ~~~~fdg~~~~yf~~~~~-g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~gvDGfR~D 477 (837)
.+ . ....+..... .....-+-+-|.--+|++|+.|.++..-....-.|||+=|.
T Consensus 411 ~~---~--~~~~~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~Gilfh 465 (672)
T PRK14581 411 SL---P--RITRIDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYH 465 (672)
T ss_pred cc---c--hhhhcccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 00 0 0001100000 00000012346677899999999999999994489998774
No 225
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=28.00 E-value=1.2e+02 Score=31.42 Aligned_cols=43 Identities=12% Similarity=0.315 Sum_probs=30.1
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEE
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 403 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~V 403 (837)
+..+..|+++|.+.|=++|+-- +-..+||+.+.++|-++||.+
T Consensus 138 etAiaml~dmG~~SiKffPm~G--------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPMGG--------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE---TT--------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCcee
Confidence 4678999999999998888641 234799999999999998876
No 226
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=27.96 E-value=63 Score=31.90 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=39.0
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003226 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 335 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
||.-.. +-.+-|+++||..- -.|-+..-||+.+.+++++|+++|++||+=.-
T Consensus 14 D~~~mk-~Aa~~L~~fgi~ye---------------------~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgA 65 (162)
T COG0041 14 DWDTMK-KAAEILEEFGVPYE---------------------VRVVSAHRTPEKMFEYAEEAEERGVKVIIAGA 65 (162)
T ss_pred hHHHHH-HHHHHHHHcCCCeE---------------------EEEEeccCCHHHHHHHHHHHHHCCCeEEEecC
Confidence 555554 57788889988542 12334556999999999999999999998653
No 227
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.52 E-value=96 Score=33.33 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=35.6
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 404 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VI 404 (837)
+.|+.++++||++|+|.+ -+... +..+.+ -+++++++|.+.+-++||+|.
T Consensus 20 e~l~~~~~~G~~~VEl~~-~~~~~----~~~~~~--------~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSV-DETDD----RLSRLD--------WSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHcCCCEEEEec-CCccc----hhhccC--------CCHHHHHHHHHHHHHcCCCce
Confidence 689999999999999943 21110 111111 157889999999999999985
No 228
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=26.83 E-value=70 Score=36.20 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
|.+-|+++.+.||+.||-||-|=|+.|+.-.
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 5788999999999999999999999999543
No 229
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=26.60 E-value=63 Score=37.08 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=46.4
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccCCCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASNN 415 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~~ 415 (837)
+++|..|+++|||.|.|- |+... ..-.-.+ .|--+.++..+-++.+++.|+. |-+|+.++.-+.+
T Consensus 115 ~e~l~~l~~~GvnrislG-vQS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLG-VQAFQ--------DELLALC-GRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEE-cccCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 468999999999999653 22211 1111122 3455889999999999999999 7899998866543
No 230
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=26.31 E-value=57 Score=37.53 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=31.9
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003226 373 VTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 373 ~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
...+-.++...|+..+++++++.||++|+-|++|-+.
T Consensus 165 lvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 165 LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred EEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 3445567788999999999999999999999999873
No 231
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=26.19 E-value=85 Score=36.62 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=44.7
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccCCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
++.|..|+++|++.|.|-. ... +..-.-.+ .+-.+.++..+.|+.+++.|+. |-+|+.++..+.
T Consensus 151 ~e~l~~lk~~G~~risiGv-qS~--------~~~~l~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-QDF--------NKEVQQAV-NRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 5799999999999996532 211 11111122 3346789999999999999996 779998765443
No 232
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=26.01 E-value=2.9e+02 Score=32.37 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee-ccCCCCC
Q 003226 385 TPDDLKSLIDKAHELGLLVLMDI-VHSHASN 414 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDv-V~NH~s~ 414 (837)
|++|.+++|+=|.-||||||-.+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68999999999999999999998 5899976
No 233
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.98 E-value=1.5e+02 Score=27.38 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=40.2
Q ss_pred hhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003226 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 343 ~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
....+..+|++++.+.+...... ..--....|..-+=+.=|...++.++++.||++|++||.
T Consensus 18 ~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 18 IAATLSSTGTPAFFLHPTEALHG-DLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHhhcCCCceEEcccchhhcc-ccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 44556778999987755322111 011123334333446668889999999999999999886
No 234
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=25.55 E-value=63 Score=30.64 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 003226 381 SRCGTPDDLKSLIDKAHELGLLVLMD 406 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlD 406 (837)
.++-+..|+|.+-....++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 47778999999999999999999999
No 235
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=25.49 E-value=1.2e+02 Score=30.03 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=35.9
Q ss_pred hhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003226 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 343 ~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
..--|+.||..+..+. .++..++...-..+.+.++++.+++.|+.|++|.+.
T Consensus 42 ~a~~l~~LG~~~~~~~---------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 93 (196)
T cd00287 42 VAVALARLGVSVTLVG---------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGP 93 (196)
T ss_pred HHHHHHHCCCcEEEEE---------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 3344788999877665 223333322111478999999999999999999874
No 236
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=25.44 E-value=8.1e+02 Score=27.37 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL~--H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQLW--HVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcc--cCccC
Confidence 67899999999999999999765 66544
No 237
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=25.33 E-value=3e+02 Score=31.40 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCEEEEeeccCCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCC-HHHHHHHHHHHHHHHHH
Q 003226 390 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGS-WEVLRFLLSNARWWLEE 468 (837)
Q Consensus 390 k~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~-~eVr~~l~~~l~~Wl~e 468 (837)
+.|+++|+++|+..++ .|-.++|.|+...........+...|--.+ ...-.||.++++++ ++
T Consensus 107 rwfL~~Ak~rGV~~f~----------------aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~-~~ 169 (384)
T PF14587_consen 107 RWFLKAAKERGVNIFE----------------AFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHY-KK 169 (384)
T ss_dssp HHHHHHHHHTT---EE----------------EE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHcCCCeEE----------------EeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHH-Hh
Q ss_pred cCCCeEEecccccccccccCccccccCCc---ccccCcccCchHHHHHHHHHHhhhccCCCe-EEEEec
Q 003226 469 YKFDGFRFDGVTSMMYTHHGLQVAFTGNY---SEYFGFATDVDAVVYLMLVNDMIHGLYPEA-VSIGED 533 (837)
Q Consensus 469 ~gvDGfR~D~v~~m~~~~~g~~~~f~~~~---~~~~g~~~d~~a~~fl~~~~~~v~~~~p~~-~~iaE~ 533 (837)
.|+.|+.+.-+ .+...+| ....-...+.+...+++.+...+++..... ++++|.
T Consensus 170 ---~GI~f~~IsP~--------NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 170 ---WGINFDYISPF--------NEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp ---TT--EEEEE----------S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred ---cCCccceeCCc--------CCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
No 238
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=25.20 E-value=4e+02 Score=31.44 Aligned_cols=104 Identities=11% Similarity=0.204 Sum_probs=63.1
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 332 ~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.+..|--+. +-|..+|+||+|+--+.=-+.--. . .|... . ..-...+=.++||++|.++||..|+.+.|
T Consensus 64 A~D~Yhry~-EDI~Lm~elG~~~yRfSIsWsRI~-P-~G~~~----~--~N~~gl~~Y~~lid~l~~~GI~P~vTL~H-- 132 (477)
T PRK15014 64 AVDFYGHYK-EDIKLFAEMGFKCFRTSIAWTRIF-P-KGDEA----Q--PNEEGLKFYDDMFDELLKYNIEPVITLSH-- 132 (477)
T ss_pred ccCcccccH-HHHHHHHHcCCCEEEecccceeec-c-CCCCC----C--CCHHHHHHHHHHHHHHHHcCCEEEEEeeC--
Confidence 344555555 689999999999975432221100 0 01000 0 11123567889999999999999999873
Q ss_pred CCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003226 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~g 470 (837)
.. -|.++..... -+.|+++.+++.+-++..+++||
T Consensus 133 ~d-------------lP~~L~~~yG-----------GW~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 133 FE-------------MPLHLVQQYG-----------SWTNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred CC-------------CCHHHHHhcC-----------CCCChHHHHHHHHHHHHHHHHhc
Confidence 21 1223321101 23467888888888888888775
No 239
>PRK05939 hypothetical protein; Provisional
Probab=24.74 E-value=86 Score=35.94 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003226 380 SSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 380 d~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
....|...+++++++.||++|+.||+|-.+
T Consensus 141 ~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 141 ANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 345688899999999999999999999764
No 240
>PRK05967 cystathionine beta-lyase; Provisional
Probab=24.17 E-value=91 Score=35.80 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 379 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 379 vd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
|....++..+++++++.||++|+-||+|-++.
T Consensus 158 PsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 158 PGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 44447899999999999999999999998874
No 241
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=23.91 E-value=91 Score=36.40 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcC-CEEEEeeccCCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG-LLVLMDIVHSHASN 414 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~G-I~VIlDvV~NH~s~ 414 (837)
+++|..++++|||.|.| .|+.... .-.-.+ .|--+.++..+-|+.+++.| +.|.+|++++.-+.
T Consensus 163 ~e~l~~l~~aGvnRiSi-GVQSf~d--------~vLk~l-gR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 163 DEKADAALDAGANRFSI-GVQSFNT--------QVRRRA-GRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHHcCCCEEEe-cCCcCCH--------HHHHHh-CCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 47999999999999943 3443211 111112 34447899999999999999 88999999876554
No 242
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=23.79 E-value=87 Score=37.33 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=44.3
Q ss_pred HhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
.++.|..|+++|+|.|+|-. +.. ++- -.-.+ .|--|.++..+-++.+++.|++|.+|+.++
T Consensus 205 ~~e~L~~L~~~G~~rVslGV-QS~-------~d~-VL~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM~G 265 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGV-QTI-------YND-ILERT-KRGHTVRDVVEATRLLRDAGLKVVYHIMPG 265 (522)
T ss_pred CHHHHHHHHHcCCCEEEEEC-ccC-------CHH-HHHHh-CCCCCHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 35799999999999997643 211 111 11222 344578999999999999999999999875
No 243
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.11 E-value=47 Score=33.37 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=34.7
Q ss_pred hhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003226 344 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 344 LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
|..++++|++.|+|.+....... .. .++++++.+.+.+.||.|+.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD--------EK---------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT--------HH---------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccc--------cc---------hHHHHHHHHHHHHcCCeEEE
Confidence 45789999999999886643321 10 78899999999999999654
No 244
>PRK09028 cystathionine beta-lyase; Provisional
Probab=23.03 E-value=97 Score=35.53 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 383 CGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 383 ~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
.|...+++++++.||++|+-||+|-++.
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4888999999999999999999997764
No 245
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=22.71 E-value=71 Score=34.81 Aligned_cols=27 Identities=15% Similarity=0.431 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003226 381 SRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
....=.|-.++||++|++- |.|+||+-
T Consensus 131 ~~p~IKE~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 131 GQPHIKEVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred CCCCHHHHHHHHHHHhcce-eEEEeecc
Confidence 3344478899999999998 99999964
No 246
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=22.63 E-value=77 Score=35.95 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
...|+..+++++++.||++|+.||+|-++.
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 457888999999999999999999998764
No 247
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=22.61 E-value=94 Score=33.75 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=37.2
Q ss_pred hhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 343 ~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
.+..+..-.+..|.+.+ ..++. |+ .=+.+++++|++.||++|+.||+|-++...
T Consensus 124 ~~~~~~~~~~~~v~i~~-~~~~t----G~-----------~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 124 LLEAAKTPKTKLLYLNN-PNNPT----GA-----------VLSEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred HHHhhcCccceEEEEEC-CCCCC----Cc-----------ccCHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 33344455677887766 22222 21 125789999999999999999999987543
No 248
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=21.91 E-value=6.4e+02 Score=29.72 Aligned_cols=104 Identities=13% Similarity=0.274 Sum_probs=62.8
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 332 ~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.+..|--.. +-+..+|+||+|+--+.=-+.--. . -|... .+ .=...+=.++||++|+++||..|+-+.|
T Consensus 68 a~d~Yhry~-eDi~Lm~~lG~~aYRfSIsWsRI~-P-~G~~~----~~--N~~gl~~Y~~lId~L~~~GI~P~VTL~H-- 136 (478)
T PRK09593 68 AIDMYHHYK-EDIALFAEMGFKTYRMSIAWTRIF-P-KGDEL----EP--NEAGLQFYEDIFKECHKYGIEPLVTITH-- 136 (478)
T ss_pred ccchHHhhH-HHHHHHHHcCCCEEEEecchhhcc-c-CCCCC----CC--CHHHHHHHHHHHHHHHHcCCEEEEEecc--
Confidence 445676666 699999999999976543221100 0 01100 00 1122566789999999999999988763
Q ss_pred CCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003226 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~g 470 (837)
.. -|.++..... -|.|+++.+.+.+-++.-+++||
T Consensus 137 ~d-------------lP~~L~~~~G-----------GW~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 137 FD-------------CPMHLIEEYG-----------GWRNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred cC-------------CCHHHHhhcC-----------CCCChHHHHHHHHHHHHHHHHhc
Confidence 21 1233322111 23467787888888887777765
No 249
>PLN02389 biotin synthase
Probab=21.86 E-value=1.9e+02 Score=32.95 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=43.6
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
++.+..||+.|++.+.+ .++.. +.-|-.+.+. .+.++-.+.++.||+.||+|..=+++.|
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeTs--------~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDTS--------REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecCC--------hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 47899999999999865 23321 1122333322 3789999999999999999988888776
No 250
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.85 E-value=1.6e+02 Score=34.53 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=42.0
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
++.|..+++.|++.|.+ ++.. .. ....-.+... -+.++..+.++.||+.||.|..++++.
T Consensus 287 ~e~l~~l~~aG~~~v~i-GiES-~s-------~~~L~~~~K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 287 YETLKVMKENGLRLLLV-GYES-GD-------QQILKNIKKG-LTVEIARRFTRDCHKLGIKVHGTFILG 346 (472)
T ss_pred HHHHHHHHHcCCCEEEE-cCCC-CC-------HHHHHHhcCC-CCHHHHHHHHHHHHHCCCeEEEEEEEe
Confidence 46889999999998874 3321 11 1111223222 268899999999999999999999874
No 251
>PRK04302 triosephosphate isomerase; Provisional
Probab=21.83 E-value=1.6e+02 Score=30.75 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=32.6
Q ss_pred hhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 003226 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 406 (837)
Q Consensus 343 ~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlD 406 (837)
-+..|+++|++.| |.|--|.. -..++..+++++|++.||.+|++
T Consensus 77 ~~~~l~~~G~~~v-ii~~ser~-------------------~~~~e~~~~v~~a~~~Gl~~I~~ 120 (223)
T PRK04302 77 LPEAVKDAGAVGT-LINHSERR-------------------LTLADIEAVVERAKKLGLESVVC 120 (223)
T ss_pred HHHHHHHcCCCEE-EEeccccc-------------------cCHHHHHHHHHHHHHCCCeEEEE
Confidence 4788999999998 33322211 12466899999999999999974
No 252
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.32 E-value=1.1e+02 Score=34.76 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
...|...+++++++.||++|+.||+|-++.
T Consensus 146 Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 146 SITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 345889999999999999999999997764
No 253
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=21.23 E-value=1.7e+02 Score=34.67 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=54.6
Q ss_pred CCceEEEEecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccC--CCCCCCCcccccccCCCCCCCHHHHHHH
Q 003226 315 KSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHS--YYASFGYHVTNFFAPSSRCGTPDDLKSL 392 (837)
Q Consensus 315 ~~~~IYE~hv~~f~~~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~--~~~s~GY~~~~y~avd~~~Gt~edfk~L 392 (837)
..+-+|.++.. ..-++|+|..++...++-+..-|.+.++|+|+.... ...+-.|.+..=+++++.|=+++.+-++
T Consensus 16 ~~v~L~~~~~~---~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~~~~SPYs~~S~~a~N~~~Id~~~l~e~ 92 (520)
T COG1640 16 SGVQLYSLRLP---GSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAYEEDSPYSPSSRRALNPLYIDVEALPEF 92 (520)
T ss_pred ceeEEeeeccC---CCCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccccCCCCCCchhhhccCceeecHHHhhhh
Confidence 45566665432 234789999888656777779999999999998754 1224568888888888888777777666
No 254
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=21.16 E-value=1.2e+02 Score=34.79 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=47.0
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCCC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.++|..|+++|||.|.|- |+... ..- ...-.|.-+.++..+.++.|++.++.|-+|++++.-+.+
T Consensus 111 ~e~l~~l~~~GvnRiSiG-vQS~~--------d~~-L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIG-VQSLK--------EDD-LKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHHCCCCEEEEE-CCcCC--------HHH-HHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 369999999999999653 22111 111 112246667899999999999999999999999876654
No 255
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.95 E-value=2.5e+02 Score=29.72 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 383 CGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 383 ~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-|++++.+|++++-.-++++++|+-+-+
T Consensus 155 ~~~~~~~~~ll~~v~~~~v~l~~D~~h~~ 183 (258)
T PRK09997 155 LTGTRQALKLIDDVGCCNLKIQYDIYHMQ 183 (258)
T ss_pred cCCHHHHHHHHHHhCCCCEEEEeEHHHhh
Confidence 45788888888888777888888876443
No 256
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=20.86 E-value=2.4e+02 Score=30.25 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecc
Q 003226 455 LRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 455 r~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
++-+++++.-++++||+||+-+|-
T Consensus 98 ~~~fv~S~~~~l~~~~fDGiDiDw 121 (253)
T cd06544 98 VSNAVSSLTSIIQTYNLDGIDIDY 121 (253)
T ss_pred HHHHHHHHHHHHHHhCCCceeeec
Confidence 344567788888999999999984
No 257
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=20.71 E-value=75 Score=35.46 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
...|+..+++++++.||++|+.||+|-++.
T Consensus 150 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 150 GNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 345778899999999999999999998864
No 258
>PRK07324 transaminase; Validated
Probab=20.71 E-value=1.4e+02 Score=33.51 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccCCC
Q 003226 385 TPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
+.++++++++.|+++|+.||+|=++.+.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 6899999999999999999999987554
No 259
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=20.58 E-value=66 Score=34.92 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003226 383 CGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 383 ~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
+|...+++++++.||++|+.||+|-++
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 466678999999999999999999874
No 260
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.56 E-value=1.5e+02 Score=28.94 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=43.7
Q ss_pred hhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Q 003226 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
++.++.|+++|+..|++.-=. .+...+..+...-++.++..+.++.++++|+.|.+.+++.
T Consensus 88 ~~~~~~l~~~g~~~i~i~le~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g 148 (204)
T cd01335 88 EELLKELKELGLDGVGVSLDS---------GDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVG 148 (204)
T ss_pred HHHHHHHHhCCCceEEEEccc---------CCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 468888999999998764311 1112222222345678999999999999999999998875
No 261
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.37 E-value=1.1e+02 Score=34.97 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=44.7
Q ss_pred hhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccCCCCC
Q 003226 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
++|..|+++|||.|.|- |+... ..-.-.+ .|--+.++..+.|+.+++.++.|-+|+.++--+.
T Consensus 105 e~L~~l~~~GvnrislG-vQS~~--------d~vL~~l-~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLG-VQALN--------DADLRFL-GRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred HHHHHHHHcCCCEEEEe-cccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 68999999999999652 22211 1111122 3455789999999999999999999999875443
No 262
>PRK07050 cystathionine beta-lyase; Provisional
Probab=20.31 E-value=1.2e+02 Score=34.72 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeeccCC
Q 003226 382 RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 382 ~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
..|.+.+++++++.||++|+.||+|-.++.
T Consensus 162 p~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 162 VTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 347899999999999999999999988654
No 263
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=20.09 E-value=7e+02 Score=29.28 Aligned_cols=104 Identities=16% Similarity=0.288 Sum_probs=65.5
Q ss_pred CCCCCCHHhhHhhhhhHHHHcCCCEEEECCccccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003226 330 EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 330 ~~~~G~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~s~GY~~~~y~avd~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
+..+..|.-.. +-+.-+|+||+|+--+.=-+.--. . .|.. .+ .--..+=.++||++|.++||.-|+-+.|
T Consensus 47 ~~a~d~Y~ry~-eDi~L~~~lG~~~yRfSIsWsRI~-P-~G~g-----~v--N~~gl~~Y~~lid~l~~~GI~P~VTL~H 116 (469)
T PRK13511 47 DPASDFYHRYP-EDLKLAEEFGVNGIRISIAWSRIF-P-DGYG-----EV--NPKGVEYYHRLFAECHKRHVEPFVTLHH 116 (469)
T ss_pred CcccchhhhhH-HHHHHHHHhCCCEEEeeccHhhcC-c-CCCC-----Cc--CHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 33455666666 699999999999976533221100 0 1110 11 1124677899999999999999998763
Q ss_pred CCCCCCccccccCCCCCCCcccccCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003226 410 SHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 410 NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eVr~~l~~~l~~Wl~e~g 470 (837)
.. -|.++... . -|.|+++.+.+.+-++.-+++||
T Consensus 117 --~d-------------lP~~L~~~-G-----------GW~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 117 --FD-------------TPEALHSN-G-----------DWLNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred --CC-------------CcHHHHHc-C-----------CCCCHHHHHHHHHHHHHHHHHhC
Confidence 21 13333321 1 24567888888888888888765
Done!