BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003227
(837 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD-LRAHKCDIAMAA 96
V W SLPD+ ++ + SCL + +S C+ W L + LW +LD R D++ +
Sbjct: 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSV 66
Query: 97 -------SLASRCMNLQKLRFRGAESADSIIHLQAR--NLRELSGDYCRKITDATLSVIV 147
+ S+C LQ L G +D I++ A+ NL L+ C ++ L ++
Sbjct: 67 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 126
Query: 148 ARHEALESLQLG--PDFCERITSDAVKAIALCCPKLKKLRLSGIR-DICGDAINALAKLC 204
+ L+ L L DF E+ AV ++ + +L LSG R ++ ++ L + C
Sbjct: 127 SSCSRLDELNLSWCFDFTEKHVQVAVAHVS---ETITQLNLSGYRKNLQKSDLSTLVRRC 183
Query: 205 PNLTDIGFLD 214
PNL + D
Sbjct: 184 PNLVHLDLSD 193
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 15/246 (6%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
L+ L+ ST + Q+ AA LA E AS +A++ GG+ +L+ L S
Sbjct: 7 LVKLLTSTDSETQKEAARDLA-------EIASGPASAIKAIVDAGGVEVLVKLLTSTDSE 59
Query: 444 LQSEAAKAIANL-SVNXXXXXXXXXXXXINILAVLARSMNRLVAEEAAGGLWNLSVG-EE 501
+Q EAA+A+AN+ S + +L L S + V +EAA L N++ G +E
Sbjct: 60 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVALAGGVHALVM 561
AI DAGGV+ LV L+ S+ + E D+ + AGGV LV
Sbjct: 120 AIKAIVDAGGVEVLVKLL--TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 177
Query: 562 LARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAA 621
L S E VQ++ G +++ + V +AG +E L +L S V++EA
Sbjct: 178 LLTSTDSE-VQKE-AARALANIASGPTSAIKAIV--DAGGVEVLQKLLTSTDSEVQKEAQ 233
Query: 622 GALWNL 627
AL N+
Sbjct: 234 RALENI 239
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNAS 657
+AG +E LV+L S V++EAA AL N++ + +++
Sbjct: 42 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE 101
Query: 658 PGLQERAAGALWGLSVSEANCI-AIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNP 716
+Q+ AA AL ++ I AI GGV L+ L S +V + AA AL N+A P
Sbjct: 102 --VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159
Query: 717 GNALR-IVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757
A++ IV+ GGV LV L +S+ S++ + AA ALA + G
Sbjct: 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKE-AARALANIASG 200
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
Query: 553 AGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSP 612
AGGV LV L S E VQ++ G + + V +AG +E LV+L S
Sbjct: 43 AGGVEVLVKLLTSTDSE-VQKEAARALANIA-SGPDEAIKAIV--DAGGVEVLVKLLTST 98
Query: 613 HEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLS 672
V++EAA AL N++ + +++ +Q+ AA AL ++
Sbjct: 99 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE--VQKEAARALANIA 156
Query: 673 VSEANCI-AIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALR-IVEEGGVPA 730
I AI GGV L+ L S +V + AA AL N+A P +A++ IV+ GGV
Sbjct: 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEV 216
Query: 731 LVHLCSSSGSKMAR 744
L L +S+ S++ +
Sbjct: 217 LQKLLTSTDSEVQK 230
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 661 QERAAGALWGLSVSEANCI-AIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNA 719
Q+ AA L ++ A+ I AI GGV L+ L S +V + AA AL N+A P A
Sbjct: 19 QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 720 LR-IVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757
++ IV+ GGV LV L +S+ S++ + AA ALA + G
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKE-AARALANIASG 116
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 52/245 (21%)
Query: 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLR----------- 86
V W SLPD+ ++ + SCL + +S C+ W L + LW +LDL
Sbjct: 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGR 66
Query: 87 -------AHKC----------------------------DIAMAASLASRCMNLQKLRFR 111
A +C +++ + S+C LQ L
Sbjct: 67 LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126
Query: 112 GAESADSIIHLQAR--NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSD 169
G +D I++ A+ NL L+ C ++ L +++ L+ L L +C T
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS--WCFDFTEK 184
Query: 170 AVK-AIALCCPKLKKLRLSGIR-DICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVL 227
V+ A+A + +L LSG R ++ ++ L + CPNL + D + +
Sbjct: 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244
Query: 228 SVRFL 232
+ +L
Sbjct: 245 QLNYL 249
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 81/193 (41%), Gaps = 19/193 (9%)
Query: 559 LVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQ 618
L + + + +QEQ D N AV +AGAL ALVQL SP+E + Q
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQILQ 72
Query: 619 EAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANC 678
EA AL N++ + S N LQE ALW LS N
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI-LQE----ALWALS----NI 123
Query: 679 IAIGRE--------GGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALR-IVEEGGVP 729
+ G E G + L+ L S E + + A AL N+A ++ +++ G +P
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183
Query: 730 ALVHLCSSSGSKM 742
ALV L SS ++
Sbjct: 184 ALVQLLSSPNEQI 196
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 107/248 (43%), Gaps = 19/248 (7%)
Query: 387 LMQSTQE----DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
L Q TQ+ D+QE+ + +++D N I +AV+ G + L+ L S E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQI-----QAVIDAGALPALVQLLSSPNE 68
Query: 443 GLQSEAAKAIANL-SVNXXXXXXXXXXXXINILAVLARSMNRLVAEEAAGGLWNL-SVGE 500
+ EA A++N+ S + L L S N + +EA L N+ S G
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVAL-AGGVHAL 559
E A+ DAG + ALV L+ SS + +L+ ++ + AG + AL
Sbjct: 129 EQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185
Query: 560 VMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQE 619
V L S + +QE N AV +EAGALE L QL +E +++E
Sbjct: 186 VQLLSSPNEQILQE---ALWALSNIASGGNEQKQAV-KEAGALEKLEQLQSHENEKIQKE 241
Query: 620 AAGALWNL 627
A AL L
Sbjct: 242 AQEALEKL 249
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 474 LAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532
L L S N + +EA L N+ S G E A+ DAG + ALV L+ SS + +L+
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQE 115
Query: 533 XXXXXXXXXXDDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSN 591
++ + AG + ALV L S + +QE G +
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE--ALWALSNIASGGNEQI 173
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLS 628
+ + +AGAL ALVQL SP+E + QE ALW LS
Sbjct: 174 QAVI--DAGALPALVQLLSSPNEQILQE---ALWALS 205
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNAS 657
+AGAL ALVQL SP+E + QEA AL N++ + S N
Sbjct: 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 153
Query: 658 PGLQERAAGALWGLSVSEANCIAIGRE--------GGVAPLIALARSEAEDVHETAAGAL 709
LQE ALW LS N + G E G + L+ L S E + + A AL
Sbjct: 154 I-LQE----ALWALS----NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 204
Query: 710 WNLAFNPGNALR--IVEEGGVPALVHLCSSSGSKMAR 744
N+A GN + + E G + L L S K+ +
Sbjct: 205 SNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQK 240
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 45 DDTVIQLMSCL-NYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCM 103
DD + Q+M+ + + +DR S S CR W + + ++ L C A L+ R
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL----CYTATPDRLSRRFP 73
Query: 104 NLQKLRFRGAESADSI--------------IHLQARNLRELSGDYCRK--ITDATLSVIV 147
NL+ L+ +G A + + NLR+L + R+ ++D L +
Sbjct: 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA 133
Query: 148 -ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKL 184
AR + LE+L+L D C T+D + +I C K+K L
Sbjct: 134 KARADDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTL 169
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 67/156 (42%), Gaps = 18/156 (11%)
Query: 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNAS 657
+AGAL ALVQL SP+E + QEA AL N++ + S N
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 658 PGLQERAAGALWGLSVSEANCIAIGRE--------GGVAPLIALARSEAEDVHETAAGAL 709
LQE ALW LS N + G E G + L+ L S E + + A AL
Sbjct: 112 I-LQE----ALWALS----NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 710 WNLAFNPGNALRIVEEGGV-PALVHLCSSSGSKMAR 744
N+A + V+E G PAL L SS K+ +
Sbjct: 163 SNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQK 198
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 474 LAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532
L L S N + +EA L N+ S G E A+ DAG + ALV L+ SS + +L+
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQE 115
Query: 533 XXXXXXXXXXDDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSN 591
++ + AG + ALV L S + +QE N
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE---ALWALSNIASGGNEQ 172
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVRQEAAGAL 624
AV +EAGA AL QL SP+E +++EA AL
Sbjct: 173 KQAV-KEAGAEPALEQLQSSPNEKIQKEAQEAL 204
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 497 SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVAL-AGG 555
S G E A+ DAG + ALV L+ SS + +L+ ++ + AG
Sbjct: 41 SGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97
Query: 556 VHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615
+ ALV L S + +QE G + + + +AGAL ALVQL SP+E
Sbjct: 98 LPALVQLLSSPNEQILQE--ALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSPNEQ 153
Query: 616 VRQEAAGALWNLS 628
+ QE ALW LS
Sbjct: 154 ILQE---ALWALS 163
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVAL-AG 554
LS G E A+ DAG + ALV L+ SS + +L+ ++ + AG
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 555 GVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614
+ ALV L S + +QE G + + + +AGAL ALVQL SP+E
Sbjct: 97 ALPALVQLLSSPNEQILQE--ALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSPNE 152
Query: 615 GVRQEAAGALWNLS 628
+ QE ALW LS
Sbjct: 153 QILQE---ALWALS 163
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 474 LAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532
L L S N + +EA L N+ S G E A+ DAG + ALV L+ SS + +L+
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQE 115
Query: 533 XXXXXXXXXXDDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSN 591
++ + AG + ALV L S + +QE N
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE---ALWALSNIASGGNEQ 172
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627
AV +EAGALE L QL +E +++EA AL L
Sbjct: 173 KQAV-KEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 78/196 (39%), Gaps = 21/196 (10%)
Query: 559 LVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQ 618
L + + + +QEQ D N AV +AGAL ALVQL SP+E + Q
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQILQ 72
Query: 619 EAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANC 678
EA AL N++ + S N LQE ALW LS N
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI-LQE----ALWALS----NI 123
Query: 679 IAIGRE--------GGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALR--IVEEGGV 728
+ G E G + L+ L S E + + A AL N+A GN + + E G +
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGAL 182
Query: 729 PALVHLCSSSGSKMAR 744
L L S K+ +
Sbjct: 183 EKLEQLQSHENEKIQK 198
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84
V W SLPD+ ++ + SCL + +S C+ W L + LW +LD
Sbjct: 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 497 SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVAL-AGG 555
S G E A+ DAG + ALV L+ SS + +L+ ++ + AG
Sbjct: 41 SGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97
Query: 556 VHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615
+ ALV L S + +QE G + + + +AGAL ALVQL SP+E
Sbjct: 98 LPALVQLLSSPNEQILQE--ALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSPNEQ 153
Query: 616 VRQEAAGALWNLS 628
+ QE ALW LS
Sbjct: 154 ILQE---ALWALS 163
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 474 LAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532
L L S N + +EA L N+ S G E A+ DAG + ALV L+ SS + +L+
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQE 115
Query: 533 XXXXXXXXXXDDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSN 591
++ + AG + ALV L S + +QE N
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE---ALWALSNIASGGNEQ 172
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627
AV +EAGALE L QL +E +++EA AL L
Sbjct: 173 KQAV-KEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNAS 657
+AGAL ALVQL SP+E + QEA AL N++ + S N
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 658 PGLQERAAGALWGLSVSEANCIAIGRE--------GGVAPLIALARSEAEDVHETAAGAL 709
LQE ALW LS N + G E G + L+ L S E + + A AL
Sbjct: 112 I-LQE----ALWALS----NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 710 WNLAFNPGNALR--IVEEGGVPALVHLCSSSGSKMAR 744
N+A GN + + E G + L L S K+ +
Sbjct: 163 SNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQK 198
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 685 GGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGS 740
GG+ L+ L RS ++V + AAGAL NL F + N L + G+ V L +G+
Sbjct: 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN 100
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSF-DDRNRXXXXXXXXXXXXXXXXQSCSNA 656
+ G + LV L RSP++ V+Q AAGAL NL F N+ + NA
Sbjct: 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA 101
Query: 657 SPGLQERAAGALWGLSVSE 675
+Q++ G LW LS ++
Sbjct: 102 E--IQKQLTGLLWNLSSTD 118
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 390 STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449
S+Q++ + DE+A + V + GGI L+DL +S + +Q AA
Sbjct: 12 SSQDEKYQAIGAYYIQHTCFQDESAK------QQVYQLGGICKLVDLLRSPNQNVQQAAA 65
Query: 450 KAIANLSVNXXXXXXXXXXXX--INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA-I 506
A+ NL +++L R+ N + ++ G LWNLS +E K I
Sbjct: 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125
Query: 507 ADAGGVKALVD-LIFKWSSGGDG 528
ADA + L D +I +S DG
Sbjct: 126 ADA--LPVLADRVIIPFSGWCDG 146
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 543 DDKCSMEVALAGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGAL 602
D+ +V GG+ LV L RS + VQ+ S +N ++ G
Sbjct: 33 DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFR--STTNKLETRRQNGIR 89
Query: 603 EALVQLTRSPHEGVRQEAAGALWNLSFDD 631
EA+ L R+ + ++++ G LWNLS D
Sbjct: 90 EAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 61/157 (38%), Gaps = 26/157 (16%)
Query: 592 NSAVGQEAGALEALVQL---------------TRSPH-EGVRQE-----AAGALWNLSFD 630
N A QEA + LVQL T+ P+ +GVR E GAL L+ D
Sbjct: 391 NHAPLQEAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARD 450
Query: 631 DRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPL 690
NR Q ++ +Q AAG L L+ + AI EG APL
Sbjct: 451 PMNRMEIFRLNTIPLFV---QLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPL 507
Query: 691 IALARSEAEDVHETAAGALWNLA--FNPGNALRIVEE 725
+ L S E AA L+ ++ NP R+ E
Sbjct: 508 MELLHSRNEGTATYAAAVLFRISEDKNPDYRKRVSVE 544
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 32 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 90
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 91 LAIFKSGGIPALVKMLGS 108
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 34 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 92
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 93 LAIFKSGGIPALVKMLGS 110
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 37 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 95
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 96 LAIFKSGGIPALVKMLGS 113
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 40 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 98
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 99 LAIFKSGGIPALVKMLGS 116
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 34 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 92
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 93 LAIFKSGGIPALVKMLGS 110
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 38 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 96
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 97 LAIFKSGGIPALVKMLGS 114
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 38 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 96
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 97 LAIFKSGGIPALVKMLGS 114
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 39 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 97
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 98 LAIFKSGGIPALVKMLGS 115
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 36 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 94
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 95 LAIFKSGGIPALVKMLGS 112
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 21 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 79
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 80 LAIFKSGGIPALVKMLGS 97
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 21 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 79
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 80 LAIFKSGGIPALVKMLGS 97
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 23 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 81
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 82 LAIFKSGGIPALVKMLGS 99
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 25 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 83
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 84 LAIFKSGGIPALVKMLGS 101
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 33 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 91
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 92 LAIFKSGGIPALVKMLGS 109
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA +G L NL+ +
Sbjct: 169 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTSGTLHNLSHHREGL 227
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV++ S
Sbjct: 228 LAIFKSGGIPALVNMLGS 245
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA---AGALWNLAFNPGNA 719
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 32 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 90
Query: 720 LRIVEEGGVPALVHLCSS 737
L I + GG+PALV + S
Sbjct: 91 LAIFKSGGIPALVKMLGS 108
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80
W SLPD+ ++ + SCL + +S C+ W L + LW
Sbjct: 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41
>pdb|2IQC|A Chain A, Crystal Structure Of Human Fancf Protein That Functions In
The Assembly Of A Dna Damage Signaling Complex
Length = 210
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 113 AESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLG--PDFCERITSDA 170
E + ++H N E+ +CR + L+++ +RH AL + LG D+ +R+ D
Sbjct: 84 GEGSQVLVHWLLGN-SEVFAAFCRALPAGLLTLVTSRHPALSPVYLGLLTDWGQRLHYDL 142
Query: 171 VKAI 174
K I
Sbjct: 143 QKGI 146
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 593 SAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNR 634
SA+ QE AL A+ L + HE V + A+GAL NL+ D RN+
Sbjct: 349 SALRQEK-ALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 686 GVAPLIALARSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALVHL 734
G+ L+ L ++VH A GAL N++F + N + I GVPALV L
Sbjct: 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL 141
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 664 AAGALWGLSV--SEANCIAIGREGGVAPLIALARSEAE-DVHETAAGALWNLAFNPGNAL 720
A GAL +S + N IAI GV L+ L R + D+ E G LWNL+ + +
Sbjct: 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169
Query: 721 RIVE 724
IV+
Sbjct: 170 EIVD 173
>pdb|2GJV|A Chain A, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|B Chain B, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|C Chain C, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|D Chain D, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|E Chain E, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
pdb|2GJV|F Chain F, Crystal Structure Of A Protein Of Unknown Function From
Salmonella Typhimurium
Length = 175
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 118 SIIHLQARNLRELSGDYCRKI--TDATLSVIVARHEALESLQLGPDFCERITSDAVKAIA 175
S+IH A LREL+ D I TDA + + + + G F E +DA
Sbjct: 29 SVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDAT---- 84
Query: 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC 215
+L ++ + I DAINAL +L +L I DC
Sbjct: 85 -VQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDC 123
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 699 EDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSS 738
EDV GAL NL F + N L + E GVP L+ + +
Sbjct: 66 EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT 106
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 43 LPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80
LP + + ++S L +D + TCR WR L LW
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLW 59
>pdb|1UUN|A Chain A, Main Porin From Mycobacteria Smegmatis (Mspa)
pdb|1UUN|B Chain B, Main Porin From Mycobacteria Smegmatis (Mspa)
Length = 184
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 658 PGLQERA------AGALWGLSVSEANCIAIGREGGV--APLIALARSEAEDVHETAAGAL 709
PG+QE A +GA G++VS A+ G GGV P L S + V T G
Sbjct: 123 PGIQEVATFSVDVSGAEGGVAVSNAHGTVTGAAGGVLLRPFARLIASTGDSV--TTYGEP 180
Query: 710 WNL 712
WN+
Sbjct: 181 WNM 183
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 37/178 (20%)
Query: 42 SLPDDTVIQLMSCLNY-RDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLAS 100
S P++ + + S + +DR S+S C++W + W + C A++
Sbjct: 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER----WCRRKVFIGNCYAVSPATVIR 63
Query: 101 RCMNLQKLRFRGAESADSIIHLQARNL-------------RELSGDYC---------RKI 138
R ++ + +G H NL +S Y +
Sbjct: 64 RFPKVRSVELKGKP------HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV 117
Query: 139 TDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKK--LRLSGIRDICG 194
TD L +I + + L L CE ++D + AIA C LK+ LR S + D+ G
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSS--CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173
>pdb|2V9U|A Chain A, Rim Domain Of Main Porin From Mycobacteria Smegmatis
pdb|2V9U|B Chain B, Rim Domain Of Main Porin From Mycobacteria Smegmatis
pdb|2V9U|C Chain C, Rim Domain Of Main Porin From Mycobacteria Smegmatis
pdb|2V9U|D Chain D, Rim Domain Of Main Porin From Mycobacteria Smegmatis
pdb|2V9U|E Chain E, Rim Domain Of Main Porin From Mycobacteria Smegmatis
pdb|2V9U|F Chain F, Rim Domain Of Main Porin From Mycobacteria Smegmatis
pdb|2V9U|G Chain G, Rim Domain Of Main Porin From Mycobacteria Smegmatis
pdb|2V9U|H Chain H, Rim Domain Of Main Porin From Mycobacteria Smegmatis
Length = 132
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 658 PGLQERA------AGALWGLSVSEANCIAIGREGGV--APLIALARSEAEDVHETAAGAL 709
PG+QE A +GA G++VS A+ G GGV P L S + V T G
Sbjct: 71 PGIQEVATFSVDVSGAEGGVAVSNAHGTVTGAAGGVLLRPFARLIASTGDSV--TTYGEP 128
Query: 710 WNL 712
WN+
Sbjct: 129 WNM 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,221,049
Number of Sequences: 62578
Number of extensions: 716552
Number of successful extensions: 1986
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 237
length of query: 837
length of database: 14,973,337
effective HSP length: 107
effective length of query: 730
effective length of database: 8,277,491
effective search space: 6042568430
effective search space used: 6042568430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)