Query 003227
Match_columns 837
No_of_seqs 527 out of 4858
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 19:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.1E-33 2.3E-38 336.2 42.2 382 360-759 170-683 (2102)
2 KOG4224 Armadillo repeat prote 100.0 1.7E-34 3.7E-39 276.8 21.6 369 380-767 86-457 (550)
3 PLN03200 cellulose synthase-in 100.0 1.4E-32 3E-37 326.8 39.1 371 367-759 392-767 (2102)
4 KOG4224 Armadillo repeat prote 100.0 2.3E-33 5E-38 269.0 22.9 369 371-759 118-496 (550)
5 KOG0166 Karyopherin (importin) 100.0 3E-31 6.6E-36 274.9 31.2 361 381-756 68-436 (514)
6 KOG0166 Karyopherin (importin) 100.0 2.8E-30 6.1E-35 267.8 33.1 374 366-758 97-488 (514)
7 COG5064 SRP1 Karyopherin (impo 100.0 1.7E-29 3.7E-34 240.4 27.8 375 366-762 102-501 (526)
8 COG5064 SRP1 Karyopherin (impo 100.0 1.4E-29 2.9E-34 241.1 22.6 360 381-757 73-444 (526)
9 KOG4341 F-box protein containi 100.0 5.4E-30 1.2E-34 252.5 8.3 305 40-352 72-392 (483)
10 KOG2120 SCF ubiquitin ligase, 99.9 1.8E-27 4E-32 223.8 12.1 242 36-281 94-390 (419)
11 PF05804 KAP: Kinesin-associat 99.9 2.8E-24 6.1E-29 237.0 37.5 376 360-759 272-652 (708)
12 PF05804 KAP: Kinesin-associat 99.9 7.2E-23 1.6E-27 225.9 35.6 391 392-823 262-658 (708)
13 KOG1048 Neural adherens juncti 99.9 1.4E-22 3.1E-27 217.1 25.8 368 376-755 230-683 (717)
14 KOG2122 Beta-catenin-binding p 99.9 1.9E-21 4.2E-26 215.7 24.1 364 383-761 201-606 (2195)
15 KOG1048 Neural adherens juncti 99.8 1.5E-19 3.3E-24 194.1 21.5 322 429-759 234-644 (717)
16 KOG2122 Beta-catenin-binding p 99.8 1.2E-18 2.6E-23 193.9 23.8 339 366-717 222-604 (2195)
17 KOG4341 F-box protein containi 99.8 1.8E-20 4E-25 185.6 8.2 235 54-299 176-422 (483)
18 KOG4199 Uncharacterized conser 99.8 7.2E-17 1.6E-21 154.7 24.8 321 426-757 102-445 (461)
19 KOG4199 Uncharacterized conser 99.8 2.4E-16 5.2E-21 151.2 27.3 314 389-721 117-451 (461)
20 KOG4500 Rho/Rac GTPase guanine 99.8 4.4E-16 9.5E-21 154.1 26.1 379 360-759 31-434 (604)
21 KOG4500 Rho/Rac GTPase guanine 99.7 6E-15 1.3E-19 146.2 24.6 366 380-757 88-476 (604)
22 KOG1222 Kinesin associated pro 99.7 8.8E-14 1.9E-18 139.7 27.6 322 392-738 276-602 (791)
23 KOG3665 ZYG-1-like serine/thre 99.7 9.4E-14 2E-18 156.3 31.3 560 79-709 61-692 (699)
24 PF04826 Arm_2: Armadillo-like 99.7 1.4E-14 3.1E-19 142.2 21.4 243 551-805 9-253 (254)
25 PRK09687 putative lyase; Provi 99.6 6.2E-14 1.3E-18 141.5 24.5 258 427-753 22-279 (280)
26 KOG1222 Kinesin associated pro 99.6 3.9E-13 8.4E-18 135.1 29.3 376 360-759 286-666 (791)
27 PF10508 Proteasom_PSMB: Prote 99.6 6.5E-13 1.4E-17 146.6 32.9 341 379-733 77-440 (503)
28 PRK09687 putative lyase; Provi 99.6 4.5E-13 9.8E-18 135.2 25.3 253 470-808 24-276 (280)
29 PRK13800 putative oxidoreducta 99.6 6.6E-13 1.4E-17 157.5 30.8 275 380-753 622-896 (897)
30 PF10508 Proteasom_PSMB: Prote 99.6 2.1E-12 4.5E-17 142.6 31.9 354 382-758 41-422 (503)
31 PF04826 Arm_2: Armadillo-like 99.6 3.5E-13 7.5E-18 132.5 22.3 197 374-585 7-206 (254)
32 PRK13800 putative oxidoreducta 99.5 4.1E-12 8.8E-17 150.8 29.8 277 426-810 619-895 (897)
33 KOG3665 ZYG-1-like serine/thre 99.5 1.8E-11 4E-16 137.9 30.1 566 103-751 60-692 (699)
34 KOG1293 Proteins containing ar 99.4 8.3E-11 1.8E-15 124.0 24.8 385 363-762 35-539 (678)
35 cd00116 LRR_RI Leucine-rich re 99.4 2.5E-11 5.4E-16 128.7 19.0 67 227-295 193-266 (319)
36 KOG1947 Leucine rich repeat pr 99.4 2.9E-12 6.2E-17 144.7 12.1 167 123-299 241-422 (482)
37 cd00116 LRR_RI Leucine-rich re 99.4 4E-11 8.6E-16 127.2 19.7 211 81-299 54-298 (319)
38 KOG2120 SCF ubiquitin ligase, 99.3 9.9E-13 2.2E-17 125.1 5.8 169 125-299 185-359 (419)
39 cd00256 VATPase_H VATPase_H, r 99.3 4.7E-10 1E-14 117.6 26.2 322 381-713 55-424 (429)
40 KOG1947 Leucine rich repeat pr 99.2 1.8E-11 3.9E-16 138.2 9.7 197 99-296 157-369 (482)
41 KOG1293 Proteins containing ar 99.2 6.4E-09 1.4E-13 110.1 26.8 362 384-760 14-494 (678)
42 KOG1909 Ran GTPase-activating 99.2 1.2E-10 2.7E-15 114.1 12.7 189 100-295 89-316 (382)
43 cd00020 ARM Armadillo/beta-cat 99.2 6.7E-10 1.5E-14 98.5 14.7 117 423-542 2-120 (120)
44 cd00256 VATPase_H VATPase_H, r 99.2 3.2E-08 7E-13 104.0 28.1 320 428-755 53-424 (429)
45 cd00020 ARM Armadillo/beta-cat 99.2 5.5E-10 1.2E-14 99.1 12.9 116 596-714 3-120 (120)
46 KOG2171 Karyopherin (importin) 99.1 4.3E-08 9.4E-13 110.8 30.0 354 381-760 38-465 (1075)
47 PF01602 Adaptin_N: Adaptin N 99.1 1.4E-08 3E-13 115.7 25.9 330 380-759 115-447 (526)
48 PF01602 Adaptin_N: Adaptin N 99.1 2.3E-08 5E-13 114.0 27.4 326 380-760 80-410 (526)
49 KOG0168 Putative ubiquitin fus 99.0 6.4E-08 1.4E-12 105.0 24.2 257 381-652 169-437 (1051)
50 KOG2171 Karyopherin (importin) 99.0 3E-07 6.6E-12 104.1 29.2 348 382-749 162-539 (1075)
51 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.7E-08 3.6E-13 105.2 17.3 269 334-619 15-304 (312)
52 KOG3678 SARM protein (with ste 99.0 3.7E-08 8E-13 99.5 18.6 278 461-759 172-455 (832)
53 PF12937 F-box-like: F-box-lik 99.0 4.4E-10 9.6E-15 79.5 3.7 47 40-86 1-47 (47)
54 KOG2759 Vacuolar H+-ATPase V1 99.0 8.5E-08 1.8E-12 96.7 20.8 330 381-714 67-438 (442)
55 KOG2759 Vacuolar H+-ATPase V1 98.9 8.8E-08 1.9E-12 96.6 20.0 278 382-672 117-437 (442)
56 KOG1909 Ran GTPase-activating 98.9 2.3E-08 5.1E-13 98.4 15.3 146 149-300 90-262 (382)
57 KOG2973 Uncharacterized conser 98.9 4.8E-07 1E-11 87.4 23.0 298 431-760 6-319 (353)
58 KOG0168 Putative ubiquitin fus 98.9 3.4E-07 7.3E-12 99.5 24.0 353 365-736 197-653 (1051)
59 KOG2023 Nuclear transport rece 98.9 3.8E-08 8.3E-13 103.8 15.6 350 380-760 129-509 (885)
60 PF03224 V-ATPase_H_N: V-ATPas 98.9 1.2E-07 2.6E-12 98.8 19.0 228 512-746 57-304 (312)
61 KOG3207 Beta-tubulin folding c 98.9 7E-10 1.5E-14 111.9 2.1 155 103-264 121-282 (505)
62 KOG3207 Beta-tubulin folding c 98.8 1.1E-09 2.3E-14 110.6 2.7 206 81-295 124-342 (505)
63 KOG4413 26S proteasome regulat 98.8 1.7E-06 3.8E-11 83.9 23.9 362 382-753 85-481 (524)
64 KOG0946 ER-Golgi vesicle-tethe 98.8 2.6E-06 5.6E-11 92.2 27.4 326 380-723 23-409 (970)
65 KOG2160 Armadillo/beta-catenin 98.8 2.6E-07 5.6E-12 92.3 17.9 187 439-630 94-283 (342)
66 KOG3678 SARM protein (with ste 98.8 1.8E-07 3.8E-12 94.8 16.6 271 422-715 174-453 (832)
67 TIGR02270 conserved hypothetic 98.8 2.1E-06 4.6E-11 91.2 25.1 244 426-756 52-296 (410)
68 TIGR02270 conserved hypothetic 98.7 2.1E-06 4.4E-11 91.3 23.4 242 379-714 54-296 (410)
69 PTZ00429 beta-adaptin; Provisi 98.7 2.5E-05 5.5E-10 89.1 32.4 219 381-629 107-326 (746)
70 KOG1241 Karyopherin (importin) 98.7 1.3E-06 2.8E-11 94.3 20.3 392 382-798 93-534 (859)
71 PLN00113 leucine-rich repeat r 98.7 1.4E-08 3E-13 124.7 6.6 35 101-135 91-128 (968)
72 PTZ00429 beta-adaptin; Provisi 98.7 1.7E-05 3.7E-10 90.5 29.8 335 382-761 71-438 (746)
73 PLN00113 leucine-rich repeat r 98.7 1.8E-08 4E-13 123.6 5.8 182 97-289 112-295 (968)
74 KOG2023 Nuclear transport rece 98.7 3E-07 6.6E-12 97.2 13.5 361 382-763 396-782 (885)
75 KOG0946 ER-Golgi vesicle-tethe 98.6 5.9E-05 1.3E-09 82.1 29.5 323 428-760 22-403 (970)
76 KOG1062 Vesicle coat complex A 98.6 4.2E-05 9.2E-10 83.6 28.5 179 334-544 73-265 (866)
77 KOG2160 Armadillo/beta-catenin 98.6 2.1E-06 4.5E-11 86.0 17.0 187 523-714 93-282 (342)
78 KOG1789 Endocytosis protein RM 98.6 6.5E-05 1.4E-09 83.7 29.6 334 394-737 1740-2141(2235)
79 KOG2973 Uncharacterized conser 98.6 1.3E-05 2.9E-10 77.7 20.6 271 383-673 7-315 (353)
80 PF05536 Neurochondrin: Neuroc 98.6 7E-05 1.5E-09 83.2 29.4 156 380-543 6-169 (543)
81 COG1413 FOG: HEAT repeat [Ener 98.5 8E-05 1.7E-09 79.2 28.0 248 379-713 43-303 (335)
82 KOG4194 Membrane glycoprotein 98.5 8.6E-08 1.9E-12 100.4 4.1 86 204-293 244-331 (873)
83 KOG0212 Uncharacterized conser 98.5 7E-06 1.5E-10 85.7 17.2 325 425-760 81-410 (675)
84 COG1413 FOG: HEAT repeat [Ener 98.5 4.1E-05 9E-10 81.4 23.8 254 428-759 43-307 (335)
85 KOG4646 Uncharacterized conser 98.4 1.7E-06 3.7E-11 72.7 9.8 149 554-709 16-165 (173)
86 PLN03210 Resistant to P. syrin 98.4 3.9E-07 8.4E-12 112.2 8.0 83 204-293 801-884 (1153)
87 KOG1242 Protein containing ada 98.4 8.5E-05 1.8E-09 79.6 24.1 348 381-757 98-484 (569)
88 PF14664 RICTOR_N: Rapamycin-i 98.4 0.00014 3.1E-09 76.5 25.2 248 458-714 14-269 (371)
89 KOG4646 Uncharacterized conser 98.3 5.3E-06 1.1E-10 69.8 10.4 150 600-753 16-167 (173)
90 KOG2734 Uncharacterized conser 98.3 0.00014 3E-09 74.1 21.7 263 364-629 110-400 (536)
91 KOG2734 Uncharacterized conser 98.3 0.0002 4.3E-09 73.0 22.7 260 448-714 104-400 (536)
92 KOG1789 Endocytosis protein RM 98.3 0.00024 5.2E-09 79.4 25.0 311 444-760 1741-2120(2235)
93 PF14664 RICTOR_N: Rapamycin-i 98.3 0.0007 1.5E-08 71.4 27.0 305 381-713 27-363 (371)
94 KOG1241 Karyopherin (importin) 98.3 0.00014 3.1E-09 79.1 21.4 354 382-762 132-536 (859)
95 KOG4413 26S proteasome regulat 98.2 0.00011 2.4E-09 71.7 18.4 276 473-756 86-377 (524)
96 KOG0212 Uncharacterized conser 98.2 6.5E-05 1.4E-09 78.7 17.9 317 376-718 81-410 (675)
97 smart00256 FBOX A Receptor for 98.2 2.2E-06 4.8E-11 58.8 4.0 40 43-82 1-40 (41)
98 PF00646 F-box: F-box domain; 98.2 2.9E-07 6.4E-12 65.6 -0.4 43 39-81 2-44 (48)
99 COG5369 Uncharacterized conser 98.2 3.3E-05 7.2E-10 80.3 13.9 293 447-755 408-740 (743)
100 PF14580 LRR_9: Leucine-rich r 98.1 1.3E-06 2.8E-11 80.9 2.9 12 204-215 87-98 (175)
101 KOG0444 Cytoskeletal regulator 98.1 1.2E-07 2.6E-12 99.9 -4.4 153 99-262 169-325 (1255)
102 PLN03210 Resistant to P. syrin 98.1 2.8E-06 6.2E-11 104.7 6.4 82 102-190 633-715 (1153)
103 PF14580 LRR_9: Leucine-rich r 98.1 7.5E-07 1.6E-11 82.5 0.6 106 174-286 37-148 (175)
104 KOG1061 Vesicle coat complex A 98.1 0.00032 7E-09 77.0 20.6 339 380-766 87-463 (734)
105 KOG4194 Membrane glycoprotein 98.1 8.3E-07 1.8E-11 93.2 0.4 191 81-289 81-280 (873)
106 KOG1259 Nischarin, modulator o 98.1 1.8E-06 3.9E-11 83.1 2.3 162 95-265 174-364 (490)
107 KOG1059 Vesicle coat complex A 98.0 0.002 4.3E-08 70.0 24.6 216 382-631 147-367 (877)
108 KOG0618 Serine/threonine phosp 98.0 1E-06 2.2E-11 97.7 0.2 109 179-290 359-488 (1081)
109 COG5238 RNA1 Ran GTPase-activa 98.0 2.6E-05 5.7E-10 74.4 9.4 189 100-295 89-319 (388)
110 PF13646 HEAT_2: HEAT repeats; 98.0 2.2E-05 4.7E-10 64.7 8.1 88 643-752 1-88 (88)
111 PF05536 Neurochondrin: Neuroc 98.0 0.0008 1.7E-08 75.0 22.3 237 429-672 6-260 (543)
112 COG5238 RNA1 Ran GTPase-activa 98.0 0.00013 2.8E-09 69.8 13.4 202 94-300 22-263 (388)
113 KOG1059 Vesicle coat complex A 98.0 0.0021 4.6E-08 69.8 23.5 217 430-674 146-366 (877)
114 KOG1062 Vesicle coat complex A 98.0 0.011 2.3E-07 65.5 29.0 337 381-759 144-547 (866)
115 KOG1077 Vesicle coat complex A 98.0 0.0028 6.1E-08 68.6 24.0 357 432-828 115-501 (938)
116 KOG2982 Uncharacterized conser 98.0 5E-06 1.1E-10 80.2 3.3 154 106-264 48-210 (418)
117 KOG1060 Vesicle coat complex A 98.0 0.0046 9.9E-08 68.0 25.7 99 381-498 110-209 (968)
118 KOG0213 Splicing factor 3b, su 97.9 0.00062 1.3E-08 73.8 18.7 289 432-756 803-1107(1172)
119 KOG1242 Protein containing ada 97.9 0.0011 2.5E-08 71.2 20.8 308 430-759 98-447 (569)
120 KOG0444 Cytoskeletal regulator 97.9 6.6E-07 1.4E-11 94.5 -3.6 183 102-298 102-310 (1255)
121 PF13646 HEAT_2: HEAT repeats; 97.9 4.5E-05 9.8E-10 62.8 8.0 86 381-494 1-88 (88)
122 COG5215 KAP95 Karyopherin (imp 97.9 0.0011 2.4E-08 69.8 19.5 354 382-759 97-482 (858)
123 COG5181 HSH155 U2 snRNP splice 97.9 0.00069 1.5E-08 71.9 18.0 290 430-756 606-912 (975)
124 KOG0213 Splicing factor 3b, su 97.9 0.019 4.1E-07 62.8 28.3 224 523-759 809-1068(1172)
125 KOG1824 TATA-binding protein-i 97.9 0.0036 7.8E-08 70.1 23.5 327 392-760 622-999 (1233)
126 COG5369 Uncharacterized conser 97.8 0.00015 3.1E-09 75.7 11.2 238 380-627 432-739 (743)
127 COG5215 KAP95 Karyopherin (imp 97.8 0.0054 1.2E-07 64.9 22.5 356 383-763 137-536 (858)
128 KOG0567 HEAT repeat-containing 97.8 0.0026 5.7E-08 60.9 18.5 225 430-712 38-278 (289)
129 KOG2259 Uncharacterized conser 97.8 0.0046 9.9E-08 66.6 22.2 218 515-755 203-474 (823)
130 PF00514 Arm: Armadillo/beta-c 97.8 3.5E-05 7.6E-10 52.5 4.3 41 458-498 1-41 (41)
131 PF00514 Arm: Armadillo/beta-c 97.8 5.1E-05 1.1E-09 51.7 4.8 40 418-457 2-41 (41)
132 KOG3864 Uncharacterized conser 97.8 2.5E-05 5.3E-10 71.6 4.1 71 165-236 112-185 (221)
133 KOG0567 HEAT repeat-containing 97.7 0.0078 1.7E-07 57.8 20.1 248 445-758 22-282 (289)
134 COG5231 VMA13 Vacuolar H+-ATPa 97.7 0.0018 3.9E-08 63.4 15.7 234 476-713 156-427 (432)
135 KOG1517 Guanine nucleotide bin 97.7 0.00079 1.7E-08 75.8 15.0 233 471-714 474-732 (1387)
136 KOG1060 Vesicle coat complex A 97.7 0.0078 1.7E-07 66.3 22.0 323 382-758 38-423 (968)
137 KOG1061 Vesicle coat complex A 97.7 0.0017 3.8E-08 71.5 17.3 392 382-817 52-492 (734)
138 KOG2259 Uncharacterized conser 97.7 0.0015 3.2E-08 70.3 16.2 252 382-672 201-474 (823)
139 KOG3864 Uncharacterized conser 97.6 5.2E-05 1.1E-09 69.5 4.3 89 126-219 102-190 (221)
140 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0046 9.9E-08 60.7 17.5 231 386-627 156-426 (432)
141 KOG1517 Guanine nucleotide bin 97.6 0.0016 3.4E-08 73.6 15.8 217 597-815 509-733 (1387)
142 KOG1824 TATA-binding protein-i 97.6 0.0051 1.1E-07 69.0 19.4 267 432-714 9-286 (1233)
143 COG5240 SEC21 Vesicle coat com 97.6 0.0051 1.1E-07 65.0 18.4 318 365-735 255-578 (898)
144 KOG2982 Uncharacterized conser 97.5 8.7E-05 1.9E-09 71.9 3.7 85 180-265 174-261 (418)
145 KOG1077 Vesicle coat complex A 97.4 0.017 3.6E-07 62.9 20.2 311 383-727 150-501 (938)
146 COG5181 HSH155 U2 snRNP splice 97.4 0.0044 9.6E-08 66.0 15.1 262 471-759 606-873 (975)
147 PF10165 Ric8: Guanine nucleot 97.4 0.017 3.7E-07 63.1 20.5 259 364-632 7-340 (446)
148 PF10165 Ric8: Guanine nucleot 97.4 0.017 3.6E-07 63.2 20.3 275 421-715 15-338 (446)
149 KOG1859 Leucine-rich repeat pr 97.3 4.8E-05 1E-09 82.5 -0.9 52 95-146 76-130 (1096)
150 PRK15387 E3 ubiquitin-protein 97.3 0.00028 6E-09 81.1 5.0 32 253-289 382-413 (788)
151 KOG0618 Serine/threonine phosp 97.2 5.5E-05 1.2E-09 84.5 -0.8 160 125-300 359-521 (1081)
152 KOG1058 Vesicle coat complex C 97.2 0.063 1.4E-06 59.1 21.5 317 380-759 135-466 (948)
153 COG5240 SEC21 Vesicle coat com 97.2 0.12 2.6E-06 55.2 22.6 332 382-759 68-463 (898)
154 PRK15370 E3 ubiquitin-protein 97.2 0.0004 8.6E-09 80.2 5.1 57 227-293 325-381 (754)
155 KOG0211 Protein phosphatase 2A 97.1 0.11 2.5E-06 59.4 23.9 344 382-757 240-626 (759)
156 PRK15387 E3 ubiquitin-protein 97.1 0.00025 5.4E-09 81.4 2.3 80 205-295 382-461 (788)
157 PF12348 CLASP_N: CLASP N term 97.1 0.01 2.3E-07 59.0 13.5 179 523-714 17-206 (228)
158 KOG2062 26S proteasome regulat 97.0 0.057 1.2E-06 59.4 18.4 238 470-757 414-654 (929)
159 smart00185 ARM Armadillo/beta- 97.0 0.0021 4.5E-08 43.7 5.3 40 459-498 2-41 (41)
160 smart00185 ARM Armadillo/beta- 97.0 0.002 4.3E-08 43.8 5.1 38 420-457 4-41 (41)
161 PRK15370 E3 ubiquitin-protein 96.9 0.00075 1.6E-08 78.0 4.0 138 103-265 241-379 (754)
162 PF13513 HEAT_EZ: HEAT-like re 96.9 0.0015 3.2E-08 47.9 4.2 55 658-712 1-55 (55)
163 KOG2062 26S proteasome regulat 96.9 0.022 4.9E-07 62.4 14.4 200 554-780 413-644 (929)
164 KOG4308 LRR-containing protein 96.8 0.001 2.2E-08 72.7 4.2 166 127-299 89-282 (478)
165 KOG1943 Beta-tubulin folding c 96.8 0.5 1.1E-05 54.8 24.9 233 427-672 340-610 (1133)
166 KOG1240 Protein kinase contain 96.8 0.084 1.8E-06 61.4 18.6 292 430-757 424-726 (1431)
167 KOG0617 Ras suppressor protein 96.7 1.8E-05 4E-10 69.9 -8.4 149 103-265 33-185 (264)
168 KOG2739 Leucine-rich acidic nu 96.7 0.00049 1.1E-08 66.2 0.3 86 204-289 42-127 (260)
169 smart00367 LRR_CC Leucine-rich 96.7 0.002 4.3E-08 38.6 2.8 24 178-201 1-24 (26)
170 PF13855 LRR_8: Leucine rich r 96.6 0.00064 1.4E-08 51.2 0.8 57 205-264 1-60 (61)
171 PF11841 DUF3361: Domain of un 96.6 0.04 8.8E-07 49.5 12.1 124 503-630 4-132 (160)
172 KOG1943 Beta-tubulin folding c 96.6 0.47 1E-05 55.0 23.1 312 377-714 339-705 (1133)
173 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0042 9.1E-08 45.5 5.0 55 614-671 1-55 (55)
174 PF11841 DUF3361: Domain of un 96.6 0.019 4.1E-07 51.5 9.8 119 595-714 6-131 (160)
175 PF09759 Atx10homo_assoc: Spin 96.6 0.0081 1.8E-07 49.5 6.7 66 444-509 2-71 (102)
176 KOG3036 Protein involved in ce 96.5 0.14 2.9E-06 48.9 15.3 181 528-713 94-290 (293)
177 PF12460 MMS19_C: RNAPII trans 96.5 0.8 1.7E-05 50.1 24.2 345 382-760 2-398 (415)
178 KOG0211 Protein phosphatase 2A 96.5 0.14 2.9E-06 58.8 18.3 339 381-757 318-665 (759)
179 PF12348 CLASP_N: CLASP N term 96.5 0.031 6.7E-07 55.6 12.0 180 439-630 18-207 (228)
180 PF09759 Atx10homo_assoc: Spin 96.5 0.0069 1.5E-07 49.9 5.8 67 486-553 3-71 (102)
181 KOG2739 Leucine-rich acidic nu 96.3 0.00048 1E-08 66.3 -2.0 59 178-237 64-126 (260)
182 KOG2123 Uncharacterized conser 96.3 0.0018 4E-08 62.4 1.8 113 179-299 19-135 (388)
183 PF13855 LRR_8: Leucine rich r 96.3 0.001 2.2E-08 50.1 -0.0 56 179-237 1-59 (61)
184 smart00367 LRR_CC Leucine-rich 96.3 0.0053 1.2E-07 36.7 3.1 24 226-249 1-24 (26)
185 KOG4308 LRR-containing protein 96.2 0.0023 5E-08 70.0 2.4 187 105-299 89-310 (478)
186 COG5096 Vesicle coat complex, 96.2 0.12 2.5E-06 58.8 15.3 169 563-757 28-196 (757)
187 PRK14707 hypothetical protein; 96.2 4.8 0.0001 50.7 28.9 395 333-759 214-616 (2710)
188 KOG1058 Vesicle coat complex C 96.2 3 6.4E-05 46.8 25.8 313 382-760 102-429 (948)
189 PF13764 E3_UbLigase_R4: E3 ub 96.2 0.52 1.1E-05 54.7 20.6 248 423-675 112-408 (802)
190 KOG1240 Protein kinase contain 96.2 0.44 9.5E-06 55.8 19.6 226 512-758 424-687 (1431)
191 KOG4151 Myosin assembly protei 96.2 0.093 2E-06 58.7 14.0 242 497-753 491-738 (748)
192 KOG2123 Uncharacterized conser 96.1 0.001 2.2E-08 64.2 -0.9 80 126-216 20-99 (388)
193 KOG0472 Leucine-rich repeat pr 96.1 0.0025 5.4E-08 64.8 1.6 88 201-292 431-541 (565)
194 COG5096 Vesicle coat complex, 96.0 0.8 1.7E-05 52.3 20.7 165 525-715 31-196 (757)
195 PF04078 Rcd1: Cell differenti 96.0 0.61 1.3E-05 45.7 17.0 193 525-724 7-228 (262)
196 KOG1259 Nischarin, modulator o 96.0 0.0032 7E-08 61.3 1.7 127 149-289 282-410 (490)
197 KOG1078 Vesicle coat complex C 96.0 1.8 3.9E-05 48.6 22.4 255 382-672 248-531 (865)
198 KOG1859 Leucine-rich repeat pr 95.9 0.001 2.3E-08 72.6 -2.2 104 177-289 185-290 (1096)
199 KOG3036 Protein involved in ce 95.9 0.53 1.2E-05 45.1 15.6 156 483-639 93-257 (293)
200 KOG4535 HEAT and armadillo rep 95.8 0.032 6.8E-07 58.1 8.1 299 443-757 270-604 (728)
201 PF13764 E3_UbLigase_R4: E3 ub 95.8 0.78 1.7E-05 53.3 19.9 246 506-757 113-407 (802)
202 PF05004 IFRD: Interferon-rela 95.8 0.62 1.3E-05 48.2 17.6 191 430-627 45-255 (309)
203 PF08569 Mo25: Mo25-like; Int 95.8 2.2 4.9E-05 44.4 21.5 205 548-759 70-286 (335)
204 PRK15386 type III secretion pr 95.8 0.019 4.2E-07 60.4 6.5 138 99-263 48-187 (426)
205 KOG1832 HIV-1 Vpr-binding prot 95.8 0.29 6.3E-06 55.0 15.3 304 419-724 385-783 (1516)
206 KOG2997 F-box protein FBX9 [Ge 95.7 0.0064 1.4E-07 59.8 2.6 48 38-85 105-157 (366)
207 KOG4151 Myosin assembly protei 95.6 0.22 4.7E-06 55.9 14.1 221 456-690 491-717 (748)
208 PF12717 Cnd1: non-SMC mitotic 95.6 0.33 7.2E-06 45.9 13.9 91 392-499 1-93 (178)
209 PF04063 DUF383: Domain of unk 95.6 0.079 1.7E-06 50.1 9.3 126 611-736 6-157 (192)
210 PRK14707 hypothetical protein; 95.6 9.8 0.00021 48.1 28.3 394 333-759 298-700 (2710)
211 PF06025 DUF913: Domain of Unk 95.6 0.97 2.1E-05 48.2 18.5 189 447-639 3-243 (379)
212 KOG4535 HEAT and armadillo rep 95.6 0.05 1.1E-06 56.7 8.3 227 394-630 364-604 (728)
213 COG5116 RPN2 26S proteasome re 95.6 0.37 8E-06 51.6 14.6 117 645-778 520-639 (926)
214 PF04078 Rcd1: Cell differenti 95.6 0.34 7.5E-06 47.3 13.5 226 481-713 7-261 (262)
215 KOG0281 Beta-TrCP (transducin 95.5 0.006 1.3E-07 60.2 1.6 64 37-101 72-139 (499)
216 PF12717 Cnd1: non-SMC mitotic 95.5 0.4 8.6E-06 45.3 13.9 93 568-674 1-93 (178)
217 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.047 1E-06 45.1 6.3 66 685-754 27-94 (97)
218 PF08045 CDC14: Cell division 95.4 0.27 5.9E-06 48.4 12.4 99 443-542 106-207 (257)
219 KOG0915 Uncharacterized conser 95.3 0.41 8.9E-06 57.4 15.6 314 382-717 821-1163(1702)
220 PF07814 WAPL: Wings apart-lik 95.3 1.9 4E-05 46.0 19.4 276 430-716 23-357 (361)
221 PF08569 Mo25: Mo25-like; Int 95.2 1.7 3.6E-05 45.3 18.2 215 375-596 72-295 (335)
222 PF12799 LRR_4: Leucine Rich r 95.2 0.032 6.9E-07 38.4 3.8 31 206-237 2-34 (44)
223 PF12755 Vac14_Fab1_bd: Vacuol 95.1 0.092 2E-06 43.4 7.2 65 599-669 26-92 (97)
224 KOG4237 Extracellular matrix p 95.1 0.0039 8.4E-08 63.4 -1.1 71 221-295 268-338 (498)
225 KOG1832 HIV-1 Vpr-binding prot 95.1 0.6 1.3E-05 52.7 14.9 125 635-759 595-776 (1516)
226 PF05004 IFRD: Interferon-rela 95.1 1.4 3.1E-05 45.6 17.3 192 556-757 45-258 (309)
227 PF11698 V-ATPase_H_C: V-ATPas 95.0 0.055 1.2E-06 46.0 5.6 68 430-497 45-114 (119)
228 PF04063 DUF383: Domain of unk 95.0 0.096 2.1E-06 49.5 7.8 104 481-585 7-133 (192)
229 KOG2999 Regulator of Rac1, req 95.0 0.98 2.1E-05 48.4 15.5 153 431-585 86-243 (713)
230 PLN03150 hypothetical protein; 94.9 0.032 6.9E-07 64.3 5.4 15 223-237 438-452 (623)
231 KOG0617 Ras suppressor protein 94.9 0.00094 2E-08 59.4 -5.5 11 205-215 102-112 (264)
232 PF12719 Cnd3: Nuclear condens 94.8 1.2 2.5E-05 46.2 16.2 169 383-566 31-209 (298)
233 PF11698 V-ATPase_H_C: V-ATPas 94.8 0.062 1.4E-06 45.7 5.2 70 555-627 44-113 (119)
234 KOG2611 Neurochondrin/leucine- 94.7 3.1 6.6E-05 44.0 18.1 135 383-521 15-163 (698)
235 KOG2274 Predicted importin 9 [ 94.6 3.2 6.9E-05 47.6 19.3 227 524-759 461-692 (1005)
236 KOG4653 Uncharacterized conser 94.6 0.82 1.8E-05 51.7 14.6 224 512-754 726-962 (982)
237 PF12799 LRR_4: Leucine Rich r 94.6 0.045 9.6E-07 37.6 3.3 37 179-219 1-37 (44)
238 KOG1644 U2-associated snRNP A' 94.5 0.031 6.7E-07 51.8 3.0 83 205-289 42-124 (233)
239 PF14668 RICTOR_V: Rapamycin-i 94.3 0.14 3E-06 39.4 5.8 67 617-685 4-70 (73)
240 COG4886 Leucine-rich repeat (L 94.3 0.029 6.2E-07 61.2 3.0 170 103-289 116-288 (394)
241 KOG2611 Neurochondrin/leucine- 94.2 3.1 6.8E-05 44.0 16.8 150 433-584 16-182 (698)
242 PRK15386 type III secretion pr 94.2 0.06 1.3E-06 56.9 4.7 115 103-237 72-187 (426)
243 KOG1020 Sister chromatid cohes 94.1 15 0.00033 45.0 24.1 144 428-587 816-963 (1692)
244 KOG1020 Sister chromatid cohes 94.0 20 0.00043 44.0 27.5 143 381-543 818-961 (1692)
245 PF01347 Vitellogenin_N: Lipop 93.8 2.3 5E-05 49.6 17.6 203 470-709 396-617 (618)
246 KOG4658 Apoptotic ATPase [Sign 93.7 0.021 4.5E-07 67.5 0.5 107 101-216 543-653 (889)
247 smart00638 LPD_N Lipoprotein N 93.7 4.9 0.00011 46.2 19.7 167 511-708 394-572 (574)
248 KOG2025 Chromosome condensatio 93.6 3.1 6.7E-05 46.3 16.1 114 428-550 85-198 (892)
249 PF11701 UNC45-central: Myosin 93.5 0.24 5.3E-06 45.5 6.9 149 512-671 5-157 (157)
250 PF02985 HEAT: HEAT repeat; I 93.4 0.1 2.2E-06 32.7 3.0 29 601-629 1-29 (31)
251 PF02985 HEAT: HEAT repeat; I 93.3 0.14 2.9E-06 32.1 3.5 28 687-714 2-29 (31)
252 KOG0915 Uncharacterized conser 93.3 14 0.0003 45.3 22.0 278 439-759 1142-1430(1702)
253 PF12719 Cnd3: Nuclear condens 93.3 6.6 0.00014 40.7 18.0 166 471-652 28-208 (298)
254 PF07814 WAPL: Wings apart-lik 93.3 3.5 7.6E-05 43.9 16.3 272 381-674 23-356 (361)
255 PF11701 UNC45-central: Myosin 93.2 0.22 4.7E-06 45.8 6.1 144 603-753 6-156 (157)
256 KOG1078 Vesicle coat complex C 93.1 9.4 0.0002 43.3 19.1 279 430-755 247-531 (865)
257 PLN03215 ascorbic acid mannose 93.1 0.084 1.8E-06 55.1 3.6 37 39-75 3-40 (373)
258 COG4886 Leucine-rich repeat (L 93.0 0.084 1.8E-06 57.6 3.8 148 104-266 141-290 (394)
259 PLN03150 hypothetical protein; 92.9 0.12 2.6E-06 59.6 5.0 105 127-239 420-527 (623)
260 PF06025 DUF913: Domain of Unk 92.8 10 0.00022 40.6 18.8 125 349-480 73-207 (379)
261 PF13516 LRR_6: Leucine Rich r 92.8 0.096 2.1E-06 30.5 2.1 23 178-201 1-23 (24)
262 KOG1248 Uncharacterized conser 92.8 5.8 0.00013 47.1 17.7 219 524-756 665-898 (1176)
263 KOG1967 DNA repair/transcripti 92.7 0.84 1.8E-05 52.1 10.7 149 554-708 867-1018(1030)
264 KOG2999 Regulator of Rac1, req 92.6 8.2 0.00018 41.8 17.2 176 471-650 85-265 (713)
265 PF13516 LRR_6: Leucine Rich r 92.6 0.086 1.9E-06 30.7 1.7 20 253-272 2-21 (24)
266 PF08045 CDC14: Cell division 92.5 0.89 1.9E-05 44.9 9.6 99 526-627 104-205 (257)
267 KOG2025 Chromosome condensatio 92.4 13 0.00028 41.7 18.7 104 471-584 87-190 (892)
268 KOG2032 Uncharacterized conser 92.2 5.7 0.00012 42.4 15.4 145 435-584 265-415 (533)
269 KOG1644 U2-associated snRNP A' 92.0 0.088 1.9E-06 48.9 1.8 58 178-237 63-123 (233)
270 KOG4653 Uncharacterized conser 91.9 3.1 6.7E-05 47.4 13.6 181 476-674 734-919 (982)
271 KOG2032 Uncharacterized conser 91.7 6.7 0.00015 41.9 15.2 157 508-672 252-414 (533)
272 KOG0531 Protein phosphatase 1, 91.3 0.019 4.1E-07 62.9 -3.9 169 102-289 94-266 (414)
273 COG5116 RPN2 26S proteasome re 91.3 5.8 0.00013 43.0 14.3 131 604-757 520-651 (926)
274 KOG4658 Apoptotic ATPase [Sign 91.2 0.14 3.1E-06 60.7 3.0 32 205-236 571-604 (889)
275 PF14668 RICTOR_V: Rapamycin-i 91.2 0.91 2E-05 35.0 6.3 66 445-510 4-70 (73)
276 KOG4237 Extracellular matrix p 91.1 0.075 1.6E-06 54.4 0.6 61 123-188 89-149 (498)
277 KOG2274 Predicted importin 9 [ 91.0 7.5 0.00016 44.7 15.7 223 481-714 462-689 (1005)
278 KOG0531 Protein phosphatase 1, 90.7 0.1 2.2E-06 57.1 1.2 82 203-289 116-197 (414)
279 PF12460 MMS19_C: RNAPII trans 90.5 30 0.00066 37.8 26.6 298 392-716 56-396 (415)
280 smart00638 LPD_N Lipoprotein N 90.4 19 0.00042 41.4 19.4 164 555-745 394-567 (574)
281 KOG0414 Chromosome condensatio 90.2 4 8.7E-05 48.3 13.0 157 429-612 920-1083(1251)
282 smart00368 LRR_RI Leucine rich 90.1 0.37 8.1E-06 29.2 2.8 24 253-276 2-25 (28)
283 KOG1991 Nuclear transport rece 89.7 18 0.00039 42.3 17.4 135 511-652 411-558 (1010)
284 KOG1248 Uncharacterized conser 89.7 26 0.00057 42.0 19.0 226 389-629 664-898 (1176)
285 KOG0472 Leucine-rich repeat pr 89.7 0.21 4.7E-06 51.3 2.3 119 107-240 416-541 (565)
286 PF05918 API5: Apoptosis inhib 89.5 2.3 4.9E-05 47.1 10.1 98 377-494 57-158 (556)
287 PF05918 API5: Apoptosis inhib 89.1 43 0.00093 37.5 22.1 175 432-629 27-207 (556)
288 PF14225 MOR2-PAG1_C: Cell mor 88.8 28 0.00061 35.0 17.3 161 484-671 77-252 (262)
289 KOG2956 CLIP-associating prote 88.7 23 0.00049 37.9 15.9 145 555-713 330-476 (516)
290 KOG1967 DNA repair/transcripti 88.5 1.8 4E-05 49.5 8.6 150 599-753 866-1021(1030)
291 COG5209 RCD1 Uncharacterized p 87.7 2.5 5.5E-05 39.9 7.6 150 529-682 116-277 (315)
292 KOG0414 Chromosome condensatio 87.5 5.1 0.00011 47.4 11.5 140 471-630 921-1065(1251)
293 KOG1788 Uncharacterized conser 87.1 20 0.00044 42.0 15.4 277 402-716 665-984 (2799)
294 PF06371 Drf_GBD: Diaphanous G 86.8 3.3 7.1E-05 39.5 8.5 79 419-497 98-186 (187)
295 KOG1566 Conserved protein Mo25 86.0 34 0.00074 34.6 14.7 205 422-631 73-288 (342)
296 KOG2956 CLIP-associating prote 85.8 38 0.00082 36.3 15.6 143 512-671 331-475 (516)
297 COG5098 Chromosome condensatio 85.2 25 0.00055 39.4 14.5 129 440-585 908-1038(1128)
298 KOG2137 Protein kinase [Signal 85.0 15 0.00032 41.5 13.0 168 425-613 346-521 (700)
299 PF06371 Drf_GBD: Diaphanous G 84.9 7.7 0.00017 36.9 10.0 108 429-541 67-186 (187)
300 PF08324 PUL: PUL domain; Int 83.8 4.2 9.1E-05 41.4 8.1 159 601-759 64-234 (268)
301 KOG4464 Signaling protein RIC- 83.7 62 0.0013 34.1 16.8 155 432-586 49-233 (532)
302 PF14500 MMS19_N: Dos2-interac 82.4 29 0.00064 34.9 13.1 223 473-714 3-237 (262)
303 PF12031 DUF3518: Domain of un 82.1 4.8 0.0001 38.9 6.9 96 658-753 138-243 (257)
304 PF12031 DUF3518: Domain of un 82.0 3.7 8E-05 39.7 6.1 82 484-567 139-229 (257)
305 PF12530 DUF3730: Protein of u 82.0 56 0.0012 32.3 18.3 179 557-757 3-190 (234)
306 PF01347 Vitellogenin_N: Lipop 81.8 39 0.00085 39.3 16.1 202 511-747 396-613 (618)
307 PF08324 PUL: PUL domain; Int 81.5 30 0.00066 35.1 13.4 173 488-664 82-265 (268)
308 COG5218 YCG1 Chromosome conden 80.4 15 0.00033 40.1 10.6 105 641-752 91-195 (885)
309 COG5209 RCD1 Uncharacterized p 80.4 7.7 0.00017 36.8 7.4 144 572-722 117-276 (315)
310 PF14500 MMS19_N: Dos2-interac 80.1 70 0.0015 32.3 16.3 213 433-673 4-237 (262)
311 KOG3763 mRNA export factor TAP 80.0 2.9 6.3E-05 45.4 5.3 88 172-259 211-307 (585)
312 smart00368 LRR_RI Leucine rich 79.8 2.9 6.3E-05 25.3 3.1 22 180-202 3-24 (28)
313 KOG0274 Cdc4 and related F-box 79.2 1 2.2E-05 50.4 1.7 46 36-81 104-149 (537)
314 KOG0301 Phospholipase A2-activ 78.8 77 0.0017 35.7 15.3 164 569-739 558-729 (745)
315 KOG1848 Uncharacterized conser 78.5 52 0.0011 40.4 14.8 220 469-714 796-1026(1610)
316 PF10363 DUF2435: Protein of u 78.4 4.2 9.1E-05 33.3 4.6 73 687-761 5-77 (92)
317 KOG1243 Protein kinase [Genera 78.4 43 0.00092 37.9 13.5 189 551-756 327-515 (690)
318 KOG1820 Microtubule-associated 77.5 64 0.0014 38.2 15.3 173 569-757 267-444 (815)
319 PF11865 DUF3385: Domain of un 77.3 29 0.00063 32.0 10.4 143 430-583 12-156 (160)
320 KOG1788 Uncharacterized conser 76.9 39 0.00084 39.8 12.8 278 360-672 665-981 (2799)
321 KOG1820 Microtubule-associated 76.7 62 0.0013 38.3 14.9 176 478-672 262-442 (815)
322 PF12530 DUF3730: Protein of u 76.5 84 0.0018 31.1 18.0 140 431-584 3-151 (234)
323 COG5098 Chromosome condensatio 75.9 16 0.00034 40.9 9.3 187 612-821 908-1100(1128)
324 cd03561 VHS VHS domain family; 75.7 24 0.00052 31.3 9.2 76 599-674 36-113 (133)
325 KOG4579 Leucine-rich repeat (L 75.6 1.1 2.5E-05 39.0 0.6 35 203-238 75-111 (177)
326 PF11707 Npa1: Ribosome 60S bi 75.4 1.1E+02 0.0024 32.1 21.6 158 424-585 53-238 (330)
327 PF13013 F-box-like_2: F-box-l 75.0 4.3 9.2E-05 34.3 3.9 30 39-68 21-50 (109)
328 KOG1949 Uncharacterized conser 75.0 1.5E+02 0.0033 33.7 16.2 176 523-714 184-370 (1005)
329 cd03568 VHS_STAM VHS domain fa 74.8 12 0.00026 33.7 7.0 70 429-498 38-110 (144)
330 KOG1991 Nuclear transport rece 74.8 1.9E+02 0.0041 34.5 27.9 315 387-724 470-811 (1010)
331 COG5218 YCG1 Chromosome conden 74.2 1.5E+02 0.0033 33.0 20.0 107 600-719 91-201 (885)
332 KOG2137 Protein kinase [Signal 73.9 20 0.00042 40.6 9.6 135 424-566 385-520 (700)
333 PF10363 DUF2435: Protein of u 73.5 8.2 0.00018 31.6 5.1 82 645-737 7-88 (92)
334 KOG0301 Phospholipase A2-activ 73.2 72 0.0016 35.9 13.3 182 384-576 549-738 (745)
335 KOG3926 F-box proteins [Amino 73.2 2.1 4.6E-05 41.5 1.8 49 36-84 198-247 (332)
336 cd03567 VHS_GGA VHS domain fam 72.9 16 0.00034 32.7 7.2 69 429-497 39-115 (139)
337 PF14726 RTTN_N: Rotatin, an a 72.7 27 0.00059 28.9 7.9 69 426-494 28-96 (98)
338 KOG1566 Conserved protein Mo25 72.5 1.2E+02 0.0025 31.0 17.5 204 462-675 72-288 (342)
339 PF08167 RIX1: rRNA processing 72.5 15 0.00033 34.1 7.3 110 430-542 27-143 (165)
340 cd03569 VHS_Hrs_Vps27p VHS dom 71.8 31 0.00068 31.0 8.9 73 599-673 40-114 (142)
341 PF14631 FancD2: Fanconi anaem 71.7 2.1E+02 0.0045 36.7 18.8 212 472-705 345-574 (1426)
342 smart00288 VHS Domain present 71.4 25 0.00054 31.2 8.1 74 599-673 36-111 (133)
343 PF13504 LRR_7: Leucine rich r 70.6 3.5 7.7E-05 21.6 1.6 9 255-263 3-11 (17)
344 PF11865 DUF3385: Domain of un 70.5 47 0.001 30.6 10.0 143 471-627 12-155 (160)
345 KOG4579 Leucine-rich repeat (L 70.3 1.8 3.9E-05 37.9 0.6 12 178-189 99-110 (177)
346 PF08506 Cse1: Cse1; InterPro 69.6 1.2E+02 0.0026 32.4 14.2 145 550-709 206-370 (370)
347 cd03569 VHS_Hrs_Vps27p VHS dom 69.2 21 0.00044 32.1 7.2 70 429-498 42-114 (142)
348 cd03561 VHS VHS domain family; 69.1 23 0.0005 31.4 7.5 70 429-498 38-112 (133)
349 KOG1243 Protein kinase [Genera 68.1 36 0.00078 38.5 10.0 184 425-626 327-512 (690)
350 PF13306 LRR_5: Leucine rich r 67.8 2.1 4.5E-05 37.7 0.6 32 204-235 57-89 (129)
351 PF12830 Nipped-B_C: Sister ch 67.7 1.1E+02 0.0024 29.0 12.2 121 382-520 11-140 (187)
352 PF13306 LRR_5: Leucine rich r 67.3 1.3 2.9E-05 39.0 -0.8 99 124-236 11-112 (129)
353 PF14631 FancD2: Fanconi anaem 67.2 1.3E+02 0.0029 38.4 15.8 114 641-760 379-506 (1426)
354 KOG3763 mRNA export factor TAP 67.2 12 0.00025 41.0 5.9 89 141-234 208-308 (585)
355 PF14726 RTTN_N: Rotatin, an a 66.7 53 0.0012 27.2 8.4 68 598-668 28-95 (98)
356 PF12231 Rif1_N: Rap1-interact 64.9 2E+02 0.0043 30.9 14.9 134 526-672 59-203 (372)
357 KOG1949 Uncharacterized conser 63.5 1.2E+02 0.0025 34.6 12.5 155 421-583 167-330 (1005)
358 KOG2005 26S proteasome regulat 63.0 2.7E+02 0.0059 31.7 16.1 202 378-581 47-293 (878)
359 smart00288 VHS Domain present 62.4 33 0.00072 30.4 7.1 70 429-498 38-111 (133)
360 PF11707 Npa1: Ribosome 60S bi 60.5 2.3E+02 0.0049 29.9 19.3 156 381-545 58-240 (330)
361 cd03567 VHS_GGA VHS domain fam 60.3 72 0.0016 28.5 8.8 74 600-673 38-116 (139)
362 PF09372 PRANC: PRANC domain; 59.6 8.3 0.00018 32.0 2.6 26 38-63 70-95 (97)
363 PF08167 RIX1: rRNA processing 59.1 40 0.00088 31.2 7.4 110 600-714 25-143 (165)
364 KOG2933 Uncharacterized conser 58.6 60 0.0013 33.0 8.6 138 601-753 89-231 (334)
365 KOG0413 Uncharacterized conser 58.1 34 0.00074 40.0 7.7 125 527-672 945-1072(1529)
366 PF08216 CTNNBL: Catenin-beta- 57.9 13 0.00028 31.1 3.4 42 446-487 64-105 (108)
367 cd03568 VHS_STAM VHS domain fa 57.6 34 0.00073 30.8 6.3 72 686-757 38-111 (144)
368 PF13251 DUF4042: Domain of un 57.4 1.6E+02 0.0036 27.7 11.0 112 511-630 40-175 (182)
369 PF00790 VHS: VHS domain; Int 56.7 36 0.00078 30.5 6.5 74 599-673 41-118 (140)
370 PF07723 LRR_2: Leucine Rich R 55.4 9.3 0.0002 22.7 1.6 25 127-151 2-26 (26)
371 PF03130 HEAT_PBS: PBS lyase H 54.6 10 0.00022 22.7 1.7 26 395-438 1-26 (27)
372 KOG4464 Signaling protein RIC- 54.4 2E+02 0.0043 30.5 11.7 156 514-674 49-232 (532)
373 KOG2933 Uncharacterized conser 54.3 88 0.0019 31.8 9.0 129 523-670 98-231 (334)
374 PF12231 Rif1_N: Rap1-interact 53.7 3.1E+02 0.0068 29.4 19.3 136 482-628 59-203 (372)
375 PF13251 DUF4042: Domain of un 52.7 1E+02 0.0022 29.0 8.9 116 555-674 40-175 (182)
376 PF14663 RasGEF_N_2: Rapamycin 52.0 62 0.0013 27.8 6.8 40 429-468 9-48 (115)
377 PF12830 Nipped-B_C: Sister ch 51.9 2.2E+02 0.0047 27.0 13.8 62 429-498 9-74 (187)
378 COG5656 SXM1 Importin, protein 51.9 4.4E+02 0.0095 30.6 18.6 120 427-551 407-537 (970)
379 KOG1822 Uncharacterized conser 50.7 6.7E+02 0.015 32.8 17.1 248 360-626 855-1124(2067)
380 PF04821 TIMELESS: Timeless pr 50.2 2.9E+02 0.0062 28.0 12.4 41 503-543 102-150 (266)
381 PF11864 DUF3384: Domain of un 49.4 4.1E+02 0.0089 29.5 20.5 105 643-755 215-329 (464)
382 PF10521 DUF2454: Protein of u 49.3 96 0.0021 31.8 9.0 73 600-672 119-202 (282)
383 PF00560 LRR_1: Leucine Rich R 48.2 8.2 0.00018 21.7 0.6 9 280-288 2-10 (22)
384 PF11864 DUF3384: Domain of un 47.1 4.5E+02 0.0097 29.3 23.1 252 441-713 42-329 (464)
385 PLN03076 ARF guanine nucleotid 45.2 6.4E+02 0.014 33.4 16.6 207 481-695 1149-1403(1780)
386 cd08050 TAF6 TATA Binding Prot 43.6 2.3E+02 0.0051 29.9 11.0 143 432-583 182-339 (343)
387 smart00567 EZ_HEAT E-Z type HE 42.5 33 0.00071 20.9 2.7 28 443-480 2-29 (30)
388 PF14663 RasGEF_N_2: Rapamycin 42.3 67 0.0015 27.6 5.6 38 686-723 9-46 (115)
389 PF10521 DUF2454: Protein of u 39.6 3.9E+02 0.0085 27.3 11.7 73 470-542 120-203 (282)
390 PLN03076 ARF guanine nucleotid 39.5 1.1E+03 0.023 31.5 18.8 170 361-540 1116-1297(1780)
391 KOG0891 DNA-dependent protein 39.1 1.1E+03 0.023 32.3 17.4 113 643-759 650-766 (2341)
392 KOG1848 Uncharacterized conser 38.9 8E+02 0.017 31.0 14.9 99 481-584 854-958 (1610)
393 PF00790 VHS: VHS domain; Int 38.9 48 0.001 29.7 4.4 72 686-757 43-119 (140)
394 PF12726 SEN1_N: SEN1 N termin 38.4 3.1E+02 0.0067 32.6 12.2 142 555-714 442-585 (727)
395 cd03565 VHS_Tom1 VHS domain fa 38.3 3E+02 0.0064 24.7 9.5 74 600-673 38-115 (141)
396 KOG2549 Transcription initiati 38.2 5.9E+02 0.013 28.5 12.7 145 431-584 210-370 (576)
397 KOG2011 Sister chromatid cohes 37.6 8.6E+02 0.019 29.9 15.1 133 568-713 300-434 (1048)
398 PF06012 DUF908: Domain of Unk 37.6 1.4E+02 0.003 31.4 8.2 61 615-675 237-299 (329)
399 PF06685 DUF1186: Protein of u 37.2 4.4E+02 0.0095 26.3 13.8 82 423-509 68-154 (249)
400 KOG1791 Uncharacterized conser 36.1 7.3E+02 0.016 31.7 14.2 205 423-630 1434-1661(1758)
401 PF11229 DUF3028: Protein of u 36.1 6.4E+02 0.014 27.9 14.5 236 511-761 98-358 (589)
402 PF04869 Uso1_p115_head: Uso1 35.6 5.3E+02 0.011 26.8 11.9 103 439-541 108-230 (312)
403 cd08050 TAF6 TATA Binding Prot 34.7 3.5E+02 0.0076 28.6 10.6 95 657-756 230-340 (343)
404 PF11791 Aconitase_B_N: Aconit 34.3 63 0.0014 29.0 4.1 27 471-497 96-122 (154)
405 PF04499 SAPS: SIT4 phosphatas 34.1 2.4E+02 0.0052 31.4 9.6 81 547-627 55-146 (475)
406 PF08216 CTNNBL: Catenin-beta- 33.6 34 0.00075 28.7 2.3 41 663-703 65-105 (108)
407 PF08389 Xpo1: Exportin 1-like 33.4 1.9E+02 0.0042 25.6 7.7 130 569-709 2-148 (148)
408 KOG3735 Tropomodulin and leiom 33.4 53 0.0012 33.7 4.0 27 174-201 250-276 (353)
409 PF01603 B56: Protein phosphat 33.3 6.7E+02 0.015 27.3 13.5 70 470-542 134-204 (409)
410 PF11791 Aconitase_B_N: Aconit 31.0 4E+02 0.0088 24.1 9.0 58 400-457 62-123 (154)
411 PF06685 DUF1186: Protein of u 30.9 5.5E+02 0.012 25.6 13.8 94 445-562 59-161 (249)
412 KOG4231 Intracellular membrane 30.1 51 0.0011 35.6 3.3 72 556-630 329-400 (763)
413 PF14225 MOR2-PAG1_C: Cell mor 29.4 6E+02 0.013 25.6 20.7 164 441-626 75-251 (262)
414 PF14666 RICTOR_M: Rapamycin-i 29.4 5.6E+02 0.012 25.2 13.3 131 483-628 78-224 (226)
415 cd03565 VHS_Tom1 VHS domain fa 29.0 2.8E+02 0.0061 24.8 7.6 69 430-498 40-115 (141)
416 smart00369 LRR_TYP Leucine-ric 28.8 45 0.00097 19.4 1.7 13 253-265 2-14 (26)
417 smart00370 LRR Leucine-rich re 28.8 45 0.00097 19.4 1.7 13 253-265 2-14 (26)
418 PF10274 ParcG: Parkin co-regu 28.4 5.1E+02 0.011 24.4 9.9 72 600-674 38-110 (183)
419 PF08506 Cse1: Cse1; InterPro 27.8 4.9E+02 0.011 27.9 10.4 130 483-624 225-370 (370)
420 PF04064 DUF384: Domain of unk 27.7 2E+02 0.0044 21.2 5.1 51 709-759 2-52 (58)
421 cd00197 VHS_ENTH_ANTH VHS, ENT 27.6 2.8E+02 0.0061 23.6 7.2 68 429-496 38-113 (115)
422 KOG2676 Uncharacterized conser 26.6 49 0.0011 34.1 2.4 63 447-509 375-441 (478)
423 KOG3735 Tropomodulin and leiom 26.4 1.2E+02 0.0025 31.4 5.0 81 194-275 187-277 (353)
424 PF06012 DUF908: Domain of Unk 26.0 3.3E+02 0.0072 28.6 8.7 67 484-550 237-305 (329)
425 PF12726 SEN1_N: SEN1 N termin 24.6 1.2E+03 0.026 27.8 13.9 108 382-498 444-553 (727)
426 PF08389 Xpo1: Exportin 1-like 24.5 2.3E+02 0.005 25.2 6.5 108 382-493 29-148 (148)
427 KOG1988 Uncharacterized conser 24.4 1.3E+03 0.027 27.6 13.3 141 515-674 65-207 (970)
428 PF12765 Cohesin_HEAT: HEAT re 24.4 97 0.0021 20.9 2.8 29 596-624 14-42 (42)
429 PF04388 Hamartin: Hamartin pr 24.1 9.2E+02 0.02 28.3 12.4 134 428-584 4-140 (668)
430 KOG4231 Intracellular membrane 23.2 65 0.0014 34.9 2.7 65 692-757 335-400 (763)
431 PF03382 DUF285: Mycoplasma pr 22.9 46 0.00099 28.9 1.3 8 202-209 58-65 (120)
432 KOG2676 Uncharacterized conser 22.7 75 0.0016 32.8 2.9 63 574-639 375-440 (478)
433 KOG2073 SAP family cell cycle 22.7 6.1E+02 0.013 30.4 10.5 61 548-608 184-247 (838)
434 KOG0413 Uncharacterized conser 22.4 1.5E+03 0.031 27.7 15.9 107 555-671 577-683 (1529)
435 KOG2199 Signal transducing ada 22.3 3E+02 0.0064 29.1 7.0 71 428-498 45-118 (462)
436 PF15573 Imm27: Immunity prote 22.2 2.1E+02 0.0046 27.4 5.4 77 513-614 49-125 (259)
437 PF04821 TIMELESS: Timeless pr 22.0 8.3E+02 0.018 24.7 12.9 145 600-759 13-211 (266)
438 PF12397 U3snoRNP10: U3 small 21.2 5.3E+02 0.012 22.1 8.1 68 600-674 6-75 (121)
439 PLN03205 ATR interacting prote 20.4 1.1E+03 0.023 25.2 11.6 209 512-724 325-591 (652)
440 PF13001 Ecm29: Proteasome sta 20.0 7.7E+02 0.017 27.7 10.6 173 524-714 248-443 (501)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=336.24 Aligned_cols=382 Identities=25% Similarity=0.275 Sum_probs=312.9
Q ss_pred HHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc
Q 003227 360 ILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439 (837)
Q Consensus 360 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 439 (837)
.+.+++.........++..|+||.++++|+++++.+|..|+.+|.+++....+ .+..+++.|+||.|+++|++
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-------~~~aVIeaGaVP~LV~LL~s 242 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-------SISKVLDAGAVKQLLKLLGQ 242 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-------HHHHHHHCCCHHHHHHHHcc
Confidence 45666655543445556778899999999999999999999999888765443 36789999999999999987
Q ss_pred C-ChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCC---------HHHHHHHHHHHHhhccCc-c------
Q 003227 440 W-REGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMN---------RLVAEEAAGGLWNLSVGE-E------ 501 (837)
Q Consensus 440 ~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~---------~~~~~~a~~~L~~l~~~~-~------ 501 (837)
+ ++.+|+.|+++|.+++. +++.+..+++.||++.|++++..++ ..+++.|+++|.||+.+- .
T Consensus 243 g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~ 322 (2102)
T PLN03200 243 GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLG 322 (2102)
T ss_pred CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence 4 67999999999999999 6899999999999999999997644 446899999999988731 0
Q ss_pred -----ch--H------------------------------------------------------------------HHHh
Q 003227 502 -----HK--G------------------------------------------------------------------AIAD 508 (837)
Q Consensus 502 -----~~--~------------------------------------------------------------------~l~~ 508 (837)
.+ . .+.+
T Consensus 323 ~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~ 402 (2102)
T PLN03200 323 ELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH 402 (2102)
T ss_pred HhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Confidence 00 0 0111
Q ss_pred hCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Q 003227 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (837)
Q Consensus 509 ~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (837)
.++++.|+.++. ..+.+++..++++|++++.+ ++.+..+++.|+++.|+++|.+++ ..+++.|+++|.+++..
T Consensus 403 ~daik~LV~LL~---~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~-- 476 (2102)
T PLN03200 403 AEAKKVLVGLIT---MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDE-- 476 (2102)
T ss_pred ccchhhhhhhhc---cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC--
Confidence 223333333442 34568899999999999975 677899999999999999999876 89999999999999975
Q ss_pred CCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhh-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 003227 588 SNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAG 666 (837)
Q Consensus 588 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~ 666 (837)
+++++..+.+.|++|.|+++|.+++.++++.|+++|.|++.++++ +..+.+.|++++|+++|.+ ++.++++.|++
T Consensus 477 -ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s---gd~~~q~~Aa~ 552 (2102)
T PLN03200 477 -VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN---GGPKGQEIAAK 552 (2102)
T ss_pred -CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHH
Confidence 566788889999999999999999999999999999999998655 4455578999999999998 89999999999
Q ss_pred HHHhcccCccc--------------------------------------hhhhhccCChHHHHHHhccCCHHHHHHHHHH
Q 003227 667 ALWGLSVSEAN--------------------------------------CIAIGREGGVAPLIALARSEAEDVHETAAGA 708 (837)
Q Consensus 667 ~L~~l~~~~~~--------------------------------------~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~ 708 (837)
+|.+++...+. .......|+++.|+++++++++.+++.|+++
T Consensus 553 AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~i 632 (2102)
T PLN03200 553 TLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASV 632 (2102)
T ss_pred HHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999632110 0111246899999999999999999999999
Q ss_pred HHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 709 LWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 709 L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
|.+++. +++.+..++..|++++|+.++.+++ ..++..|+++|.++..+..
T Consensus 633 LsnL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 633 LADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIK 683 (2102)
T ss_pred HHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCC
Confidence 999988 5566788999999999999999875 7799999999999986433
No 2
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-34 Score=276.76 Aligned_cols=369 Identities=28% Similarity=0.308 Sum_probs=336.5
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccCh
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 459 (837)
....++-++++.++.+|..|..++++|+...+. +..|++.++++.|+.-+.++..++|..++.++.+++.-+
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~en--------k~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d 157 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMEN--------KGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD 157 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceeccCC--------ceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc
Confidence 345677788999999999999999998865443 345788999999999888999999999999999999989
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (837)
+++..+...|++.++.++-++.+..++..+..+|.+++...++|+.++..|++|.|+.++ .+++.++++.++.++.|
T Consensus 158 ~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll---~s~d~dvqyycttaisn 234 (550)
T KOG4224|consen 158 SNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL---KSGDLDVQYYCTTAISN 234 (550)
T ss_pred cchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh---ccCChhHHHHHHHHhhh
Confidence 999999999999999998889999999999999999999999999999999999999999 56999999999999999
Q ss_pred hhcCCCchHHHHhcC--cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 540 LAADDKCSMEVALAG--GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 540 l~~~~~~~~~l~~~g--~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
++.+...++.+++.+ .++.|++++.+++ +.++..|..+|+|++. ..+.+..+.+.|.+|.++++++++.-...
T Consensus 235 IaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlas----dt~Yq~eiv~ag~lP~lv~Llqs~~~pli 309 (550)
T KOG4224|consen 235 IAVDRRARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLAS----DTEYQREIVEAGSLPLLVELLQSPMGPLI 309 (550)
T ss_pred hhhhHHHHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhcc----cchhhhHHHhcCCchHHHHHHhCcchhHH
Confidence 999999999999987 9999999999987 8999999999999998 45666777889999999999999887778
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-CccchhhhhccCChHHHHHHhcc
Q 003227 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARS 696 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~lL~s 696 (837)
.+.+.++.|++.++-+...|++.|.+.+|+++|.. .++++++.+|..+|+|++. ++.++..+.+.|++|.+..++.+
T Consensus 310 lasVaCIrnisihplNe~lI~dagfl~pLVrlL~~--~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 310 LASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA--GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD 387 (550)
T ss_pred HHHHHHHhhcccccCcccceecccchhHHHHHHhc--CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc
Confidence 88888999999999999999999999999999987 5778899999999999997 58889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcchhhhcc
Q 003227 697 EAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGT 767 (837)
Q Consensus 697 ~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~~~i~~ 767 (837)
+.-.+|.....++..|+.+...+..+.+.|.++.|+.+..+. +++++..|+.||.|+..+-.+...++..
T Consensus 388 ~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 388 GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999876 4889999999999998876544334433
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=326.81 Aligned_cols=371 Identities=25% Similarity=0.243 Sum_probs=323.1
Q ss_pred cCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHH
Q 003227 367 SNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQS 446 (837)
Q Consensus 367 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 446 (837)
.|+.....+...++++.|+.++...+.++|..++++|..++.++.+ .++.+.+.|++|.|+++|+++++..|.
T Consensus 392 gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e-------~~~aIi~~ggIp~LV~LL~s~s~~iQ~ 464 (2102)
T PLN03200 392 GNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGG-------LWEALGGREGVQLLISLLGLSSEQQQE 464 (2102)
T ss_pred CChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHH-------HHHHHHHcCcHHHHHHHHcCCCHHHHH
Confidence 4454444555566789999999999999999999999998876554 378899999999999999999999999
Q ss_pred HHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCcc-chHHHHhhCCHHHHHHHHHhhCC
Q 003227 447 EAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVDLIFKWSS 524 (837)
Q Consensus 447 ~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~lL~~~~~ 524 (837)
.|+++|++++. +++.+..+++.|++|.|+++|++++..+++.|+++|+|++.+++ .+..+.+.|++++|+++|+ +
T Consensus 465 ~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~---s 541 (2102)
T PLN03200 465 YAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLK---N 541 (2102)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHh---C
Confidence 99999999997 77899999999999999999999999999999999999998764 4555558899999999996 4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHH
Q 003227 525 GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~ 604 (837)
++.+.++.|+++|.+++.+.+.. .++.++.++.+.+ +.++..++.++.++....+.+..........|+++.
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsdd-~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~ 613 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGDL-PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRT 613 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHH
Confidence 78899999999999998765432 4577888887665 788899999999986643322222222335799999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--ccchhhh
Q 003227 605 LVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--EANCIAI 681 (837)
Q Consensus 605 L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~--~~~~~~l 681 (837)
|+++++++++.+++.|+++|.+++.. .+.+..++..|++++++.+|.+ ++.+++.+|+++|.+++.. ++++..+
T Consensus 614 Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss---~~~~v~keAA~AL~nL~~~~~~~q~~~~ 690 (2102)
T PLN03200 614 LIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN---NTEAVATQSARALAALSRSIKENRKVSY 690 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc---CChHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999887 5668889999999999999998 9999999999999999953 4556678
Q ss_pred hccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 682 GREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 682 ~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
++.|++++|+++|.+++.+++..|+.+|.|++.+++.+..+.+.|++++|++++++++ +..|+.|+++|..++...+
T Consensus 691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~-~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGT-LEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999986 8899999999999998776
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=269.02 Aligned_cols=369 Identities=25% Similarity=0.296 Sum_probs=329.8
Q ss_pred chhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHH
Q 003227 371 GLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAK 450 (837)
Q Consensus 371 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 450 (837)
++..+..-.|...|+.-+.++..++|..+..|+++|+..++ + +..+...|++.++.++-++.+..+|+.+..
T Consensus 118 nk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~-n-------k~kiA~sGaL~pltrLakskdirvqrnatg 189 (550)
T KOG4224|consen 118 NKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDS-N-------KVKIARSGALEPLTRLAKSKDIRVQRNATG 189 (550)
T ss_pred CceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcccc-c-------hhhhhhccchhhhHhhcccchhhHHHHHHH
Confidence 44445567787666655656677899999999999987633 3 567999999999999888899999999999
Q ss_pred HHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhC--CHHHHHHHHHhhCCCCHH
Q 003227 451 AIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAG--GVKALVDLIFKWSSGGDG 528 (837)
Q Consensus 451 ~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g--~i~~L~~lL~~~~~~~~~ 528 (837)
+|.++....++|+.++..|++|.|+.++++.++.++++++.++.+++-+..+|+.+.+.+ .++.|++++. ++++.
T Consensus 190 aLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd---~~s~k 266 (550)
T KOG4224|consen 190 ALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD---DGSDK 266 (550)
T ss_pred HHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh---CCChH
Confidence 999999999999999999999999999999999999999999999999999999999998 8999999995 58899
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH
Q 003227 529 VLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL 608 (837)
Q Consensus 529 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~l 608 (837)
++-.|..+|+|++.+.+++..++++|.+|.++++++++. -......+.+++|++. .+-+...+.+.|++.+|+.+
T Consensus 267 vkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~-~plilasVaCIrnisi----hplNe~lI~dagfl~pLVrl 341 (550)
T KOG4224|consen 267 VKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM-GPLILASVACIRNISI----HPLNEVLIADAGFLRPLVRL 341 (550)
T ss_pred HHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc-hhHHHHHHHHHhhccc----ccCcccceecccchhHHHHH
Confidence 999999999999999999999999999999999999876 4555777889999999 46777888999999999999
Q ss_pred cCCC-CHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCC
Q 003227 609 TRSP-HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGG 686 (837)
Q Consensus 609 L~~~-~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~ 686 (837)
|+.. +++++-+|..+|+||+.. ..++..+.+.|+|+.+.+++.+ ++..+|.+...+++.++-++..+..+.+.|.
T Consensus 342 L~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD---~pvsvqseisac~a~Lal~d~~k~~lld~gi 418 (550)
T KOG4224|consen 342 LRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD---GPVSVQSEISACIAQLALNDNDKEALLDSGI 418 (550)
T ss_pred HhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc---CChhHHHHHHHHHHHHHhccccHHHHhhcCC
Confidence 9987 556999999999999995 7789999999999999999998 8999999999999999999999999999999
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHc------CCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 687 VAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEE------GGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 687 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~------~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
++.|+.++.+.+.+++.+|+.+|.|++.+.++..++++. |.-..|++++.+++ -+++..+.+.+..+.++..
T Consensus 419 ~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~-~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 419 IPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE-LTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred cceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999998888887753 33556778888765 8899999999999987654
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-31 Score=274.93 Aligned_cols=361 Identities=22% Similarity=0.255 Sum_probs=311.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhcc-C
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV-N 458 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-~ 458 (837)
.+.++..+.+++++.+..+...+.++.+.... . ....++..|.+|.+|..|.. .++.+|..|+|+|.|++. +
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~-p-----pi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt 141 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERN-P-----PIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT 141 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCC-C-----CHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc
Confidence 57788888899999999999999998865543 1 24456666999999999975 579999999999999998 7
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
.+..+.+++.|+++.+++++.+++..+++.|+++|+|++.+ +..|..+.+.|++++|+.++.. +....+.+++.|+|
T Consensus 142 se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~--~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 142 SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK--SDKLSMLRNATWTL 219 (514)
T ss_pred hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc--ccchHHHHHHHHHH
Confidence 78889999999999999999999999999999999999975 5899999999999999999963 22347899999999
Q ss_pred HHhhcCCCchHHHH-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHH
Q 003227 538 ANLAADDKCSMEVA-LAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (837)
Q Consensus 538 ~~l~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~ 616 (837)
.||+++..-...+. -..++|.|..++.+.+ +++...|+|++.+|+.+ ..+.-.++++.|+++.|+.+|.+.+..+
T Consensus 220 sNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLsdg---~ne~iq~vi~~gvv~~LV~lL~~~~~~v 295 (514)
T KOG0166|consen 220 SNLCRGKNPSPPFDVVAPILPALLRLLHSTD-EEVLTDACWALSYLTDG---SNEKIQMVIDAGVVPRLVDLLGHSSPKV 295 (514)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcC---ChHHHHHHHHccchHHHHHHHcCCCccc
Confidence 99999654333322 2367899999999875 99999999999999987 4556677889999999999999999999
Q ss_pred HHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHh
Q 003227 617 RQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALA 694 (837)
Q Consensus 617 ~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL 694 (837)
+..|+.+++|++.. +...+.+++.|+++.|..++.. +....++.+|+|++.|++.. .+..+++.+.|.+|.|+++|
T Consensus 296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~--s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l 373 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS--SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL 373 (514)
T ss_pred ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc--CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence 99999999999887 4557888999999999999984 36667999999999999975 66778899999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 695 RSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 695 ~s~~~~v~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
++++.++|..|+|++.|++. .++.-..+++.|.++++..+|.-.+ ..+-..+..+|.++..
T Consensus 374 ~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D-~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 374 QTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD-VKIILVALDGLENILK 436 (514)
T ss_pred hccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC-hHHHHHHHHHHHHHHH
Confidence 99999999999999999987 4445567889999999999997665 5567888889998865
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-30 Score=267.77 Aligned_cols=374 Identities=23% Similarity=0.224 Sum_probs=313.0
Q ss_pred hcCcCchhhHHHhhhHHHHHHhhh-cCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhH
Q 003227 366 ESNPQGLDDFWLKQGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGL 444 (837)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 444 (837)
+.+|+.-.. ++.|.||.+++.|. ..++.++..|+++|.+++++..+. ...+++.|++|.++.++.+++..+
T Consensus 97 ~~~ppi~~v-i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~-------T~~vv~agavp~fi~Ll~s~~~~v 168 (514)
T KOG0166|consen 97 ERNPPIDEV-IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ-------TKVVVDAGAVPIFIQLLSSPSADV 168 (514)
T ss_pred CCCCCHHHH-HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh-------ccccccCCchHHHHHHhcCCcHHH
Confidence 455544444 66666999999996 556999999999999999988776 346899999999999999999999
Q ss_pred HHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCH-HHHHHHHHHHHhhccCcc-chHHHHhhCCHHHHHHHHHh
Q 003227 445 QSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNR-LVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVDLIFK 521 (837)
Q Consensus 445 ~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~lL~~ 521 (837)
++.|+|+|+|++. .+..|..+.+.|++++|+.++...+. ...+.+.|+|.|++.+.. ....-.-...+|.|..++
T Consensus 169 ~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-- 246 (514)
T KOG0166|consen 169 REQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-- 246 (514)
T ss_pred HHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH--
Confidence 9999999999999 57899999999999999999987765 778899999999998652 222122234689999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccc
Q 003227 522 WSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600 (837)
Q Consensus 522 ~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 600 (837)
++.++++...|+|++++|+.. ++.-+.+++.|+++.|+.+|.+.+ ..++..|++++.|++.+ +..+...+++.|
T Consensus 247 -~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~-~~v~~PaLRaiGNIvtG---~d~QTq~vi~~~ 321 (514)
T KOG0166|consen 247 -HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS-PKVVTPALRAIGNIVTG---SDEQTQVVINSG 321 (514)
T ss_pred -hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC-cccccHHHhhccceeec---cHHHHHHHHhcC
Confidence 569999999999999999975 455578889999999999999886 78889999999999987 566777888999
Q ss_pred hHHHHHHHcC-CCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--cc
Q 003227 601 ALEALVQLTR-SPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--EA 676 (837)
Q Consensus 601 ~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~--~~ 676 (837)
+++.|..++. ++...+++.|+|++.|++.. .+..+.+++.|.++.|+.+|++ .+..+|.+|+|++.|++.+ ++
T Consensus 322 ~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~---~ef~~rKEAawaIsN~ts~g~~~ 398 (514)
T KOG0166|consen 322 ALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT---AEFDIRKEAAWAISNLTSSGTPE 398 (514)
T ss_pred hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc---cchHHHHHHHHHHHhhcccCCHH
Confidence 9999999998 55667999999999999887 5678899999999999999998 8899999999999999975 55
Q ss_pred chhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCC---------cccHHHHHHcCCHHHHHHHHhcCCcHHHHHHH
Q 003227 677 NCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN---------PGNALRIVEEGGVPALVHLCSSSGSKMARFMA 747 (837)
Q Consensus 677 ~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~---------~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a 747 (837)
.-..+++.|.++++.++|.-.+..+...++.+|.++-.. ......|-+.||+..+-.+ +++.++.+...|
T Consensus 399 qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L-Q~hen~~Iy~~A 477 (514)
T KOG0166|consen 399 QIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL-QSHENEEIYKKA 477 (514)
T ss_pred HHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh-hccccHHHHHHH
Confidence 557889999999999999888888999999999998641 1222334456677665554 444458899999
Q ss_pred HHHHHHhhCCC
Q 003227 748 ALALAYMFDGR 758 (837)
Q Consensus 748 ~~aL~~l~~~~ 758 (837)
...+.....+.
T Consensus 478 ~~II~~yf~~e 488 (514)
T KOG0166|consen 478 YKIIDTYFSEE 488 (514)
T ss_pred HHHHHHhcCCC
Confidence 99998876654
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=1.7e-29 Score=240.39 Aligned_cols=375 Identities=23% Similarity=0.206 Sum_probs=309.5
Q ss_pred hcCcCchhhHHHhhhHHHHHHhhhcCC-HHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhH
Q 003227 366 ESNPQGLDDFWLKQGAGLLLSLMQSTQ-EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGL 444 (837)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 444 (837)
+.+|+...+ +..|.||.++++|.... .-.+..|+++|.+++++...... .+++.|++|.++++|.+++.++
T Consensus 102 E~~PPIq~V-IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk-------vVvd~~AVPlfiqlL~s~~~~V 173 (526)
T COG5064 102 ETSPPIQPV-IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK-------VVVDAGAVPLFIQLLSSTEDDV 173 (526)
T ss_pred ccCCCchhH-HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE-------EEEeCCchHHHHHHHcCchHHH
Confidence 566655555 77777999999995544 44588999999999988776533 4789999999999999999999
Q ss_pred HHHHHHHHHHhccC-hHHHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHhhccC--c-cchHHHHhhCCHHHHHHH
Q 003227 445 QSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMN--RLVAEEAAGGLWNLSVG--E-EHKGAIADAGGVKALVDL 518 (837)
Q Consensus 445 ~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~~a~~~L~~l~~~--~-~~~~~l~~~g~i~~L~~l 518 (837)
+..++|+|+|++.| +..|..+.++|++++++.++.+.. ..+.+.+.|+|.||+.. | .....+.. ++|.|..+
T Consensus 174 ~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KL 251 (526)
T COG5064 174 REQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKL 251 (526)
T ss_pred HHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHH
Confidence 99999999999995 578999999999999999998754 47888999999999974 3 34444433 68999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCCC-chHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 003227 519 IFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (837)
Q Consensus 519 L~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 597 (837)
+ .+.++++...|+|++.+|+..+. ....+.+.|..+.|+++|.+++ ..++..|++.+.|+... +..+-..++
T Consensus 252 i---ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s-a~iqtPalR~vGNIVTG---~D~QTqviI 324 (526)
T COG5064 252 I---YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTPALRSVGNIVTG---SDDQTQVII 324 (526)
T ss_pred H---hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc-ccccCHHHHhhcCeeec---Cccceehhe
Confidence 9 45999999999999999998654 4577889999999999999876 88999999999999997 445556778
Q ss_pred ccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--
Q 003227 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-- 674 (837)
Q Consensus 598 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-- 674 (837)
..|+++.+..+|.++.+.+++.|||++.|++.. .+..+.+++...+|+|+.+|.. .+..++.+|+|++.|.+..
T Consensus 325 ~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~---ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 325 NCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS---AEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred ecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH---HHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999876 6778899999999999999998 9999999999999999864
Q ss_pred --ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-----------CcccHHHHHH-cCCHHHHHHHHhcCCc
Q 003227 675 --EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-----------NPGNALRIVE-EGGVPALVHLCSSSGS 740 (837)
Q Consensus 675 --~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-----------~~~~~~~i~~-~~~i~~L~~ll~~~~~ 740 (837)
|+.-..+++.|.+.+|.++|.-.+..+-+.++.++.|+-. ++..-..+++ +|++..+-.+=.+.+
T Consensus 402 ~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n- 480 (526)
T COG5064 402 NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVN- 480 (526)
T ss_pred CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccc-
Confidence 5566778889999999999987777677777777777543 1222334555 777777766666554
Q ss_pred HHHHHHHHHHHHHhhCCCCcch
Q 003227 741 KMARFMAALALAYMFDGRMDEF 762 (837)
Q Consensus 741 ~~~~~~a~~aL~~l~~~~~~~~ 762 (837)
..+...|-..+..+..+. +++
T Consensus 481 ~~iy~KAYsIIe~fFgee-D~v 501 (526)
T COG5064 481 RTIYDKAYSIIEKFFGEE-DAV 501 (526)
T ss_pred cHHHHHHHHHHHHHcccc-hhh
Confidence 778888888888876443 443
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=1.4e-29 Score=241.05 Aligned_cols=360 Identities=19% Similarity=0.208 Sum_probs=301.9
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhcc-C
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV-N 458 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-~ 458 (837)
.|.+.+-|.++|-+.+..|..-..++.+.... -..+.++++|.+|.++++|++ ...-.+..|+|+|.|++. .
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~------PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETS------PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccC------CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 47888888888888888888777665543332 125679999999999999965 566678899999999998 4
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
......+++.|++|.++++|.+++.+++++++|+|+|++.++ .+|..+.+.|++++++.++.+ +..+..+.+++.|+|
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s-s~~~ismlRn~TWtL 225 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS-SAIHISMLRNATWTL 225 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh-ccchHHHHHHhHHHH
Confidence 556677889999999999999999999999999999999765 788999999999999999975 444568899999999
Q ss_pred HHhhcCCCch---HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCH
Q 003227 538 ANLAADDKCS---MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (837)
Q Consensus 538 ~~l~~~~~~~---~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 614 (837)
.||++...-. ..+ ..++|.|.+++.+.+ +++...|+|++..++.. ..+....+.+.|..+.|+++|.+++.
T Consensus 226 SNlcRGknP~P~w~~i--sqalpiL~KLiys~D-~evlvDA~WAiSYlsDg---~~E~i~avld~g~~~RLvElLs~~sa 299 (526)
T COG5064 226 SNLCRGKNPPPDWSNI--SQALPILAKLIYSRD-PEVLVDACWAISYLSDG---PNEKIQAVLDVGIPGRLVELLSHESA 299 (526)
T ss_pred HHhhCCCCCCCchHHH--HHHHHHHHHHHhhcC-HHHHHHHHHHHHHhccC---cHHHHHHHHhcCCcHHHHHHhcCccc
Confidence 9999843221 222 246899999998775 99999999999999986 34445667789999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHH
Q 003227 615 GVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIA 692 (837)
Q Consensus 615 ~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~ 692 (837)
.++..|+..+.|+... +...+.++..|+++.+..+|.+ +...+|.+|+|++.|++.. .+..+++.+.+.+|+|++
T Consensus 300 ~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~---~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ 376 (526)
T COG5064 300 KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS---PKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC---hhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence 9999999999998877 5557788899999999999987 7779999999999999874 677788999999999999
Q ss_pred HhccCCHHHHHHHHHHHHHHcCC----cccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 693 LARSEAEDVHETAAGALWNLAFN----PGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 693 lL~s~~~~v~~~a~~~L~~l~~~----~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
+|.+.+-.++..|+|++.|...+ |+.-+.+++.|.+.+|..+|.-.+ ..+-+.+..++.++...
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d-Nkiiev~LD~~eniLk~ 444 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD-NKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC-ccchhhhHHHHHHHHhh
Confidence 99999999999999999999874 334455678999999999998765 34667778888887653
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=5.4e-30 Score=252.54 Aligned_cols=305 Identities=23% Similarity=0.291 Sum_probs=254.7
Q ss_pred CCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccccCCCCCc--CCHHHHHHHHHhCC-CcceeeecCcccc
Q 003227 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHK--CDIAMAASLASRCM-NLQKLRFRGAESA 116 (837)
Q Consensus 40 ~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~l~~~~--~~~~~l~~l~~~~~-~L~~L~l~~~~~~ 116 (837)
--.||+|++..||++|+.+.+++++++|+.|..+..+...|+++|+..+. ++..+++.+.++|. .|+.|.++||...
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v 151 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAV 151 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccC
Confidence 35799999999999999999999999999999999999999999998855 45578889999987 6999999999654
Q ss_pred h----HHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 003227 117 D----SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDI 192 (837)
Q Consensus 117 ~----~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i 192 (837)
. ......||++++|++.+|.++++..+..+.+.|++|++|++. .|..+++..+..++.+||+|++|+++.|+.|
T Consensus 152 ~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~--~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 152 GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH--SCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc--ccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 2 234558999999999999999999999999999999999996 5999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCCccEEEecCCCCCChHHh----hCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccC-CCCH
Q 003227 193 CGDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT-DVGP 267 (837)
Q Consensus 193 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l----~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~-~i~~ 267 (837)
++++++.+.+.|..++.+.+.||...+++.+ ..++.+..+++..|..+||.++..+..+|..|+.|+.+++ +++|
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 9999999999999999998889988888876 3567788888888888999998888888888999998885 7888
Q ss_pred HHHHHHHhcCcccccccccccccccchhHHHHHHhhhhh---hhh-hhhchHHHHHHhhhhcccccccccccccccCCCC
Q 003227 268 ITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKL---LLA-LFTDIFKALASLFAETTKNEKNVFLDWRNSKNKD 343 (837)
Q Consensus 268 ~~l~~l~~~~~~L~~l~l~~c~~i~~~~~~~~~~~~~~l---~l~-~~~~~~~~l~~l~~~~~~~~r~~~~~~~~l~~~~ 343 (837)
..+..+..+|++|+.+.+.+|..++|.++..+...+..| .+. ...+...++..+..+|+..+. ..+++|.
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~------lslshce 383 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV------LSLSHCE 383 (483)
T ss_pred HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc------CChhhhh
Confidence 888888888999999999999999998877776555444 332 111112246666666665553 3345666
Q ss_pred cchHHHHHH
Q 003227 344 KNLNEIMTW 352 (837)
Q Consensus 344 ~~~~~~~~~ 352 (837)
..+++++..
T Consensus 384 ~itD~gi~~ 392 (483)
T KOG4341|consen 384 LITDEGIRH 392 (483)
T ss_pred hhhhhhhhh
Confidence 666665554
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=223.84 Aligned_cols=242 Identities=26% Similarity=0.450 Sum_probs=173.6
Q ss_pred CCCCCCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccccCCCCCc--------------------------
Q 003227 36 EVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHK-------------------------- 89 (837)
Q Consensus 36 ~~~~~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~l~~~~-------------------------- 89 (837)
++..|+.||||++..||+.|+.+|+++++.||++|+++..+..+|+.+|+....
T Consensus 94 pgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~ 173 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQ 173 (419)
T ss_pred CCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcC
Confidence 356699999999999999999999999999999999999999999877776433
Q ss_pred -----------------------CCHHHHHHHHHhCCCcceeeecCcccchHHHHH--cCCCccEEecCCCCCCCHHHHH
Q 003227 90 -----------------------CDIAMAASLASRCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATLS 144 (837)
Q Consensus 90 -----------------------~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~l~ 144 (837)
++...+..+.+.|.+|+.|.|.|...+|.+... ...+|+.|+++.|..++..++.
T Consensus 174 prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 174 PRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred chhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH
Confidence 333444556667777777777777777665544 5667888888888778877777
Q ss_pred HHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHhhCCCccEEEecCCCCCChHHh
Q 003227 145 VIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRD-ICGDAINALAKLCPNLTDIGFLDCLNVDEVAL 223 (837)
Q Consensus 145 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l 223 (837)
.+.++|..|..|+| +||.-.++..-..++.--++|+.|+|+||.. +.+..+..+...||+|.+|||++|..++++.+
T Consensus 254 ll~~scs~L~~LNl--sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 254 LLLSSCSRLDELNL--SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHHHhhhhHhhcCc--hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence 77777888888888 4676655553233444457778888877743 55556677777788888888888777777443
Q ss_pred ---hCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccc
Q 003227 224 ---GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (837)
Q Consensus 224 ---~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 281 (837)
-.++.|++|.++.|+.+..+.+..+. ..|.|.+||+.|+ +.|...+-+.+.|++|+
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~-vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGC-VSDTTMELLKEMLSHLK 390 (419)
T ss_pred HHHHhcchheeeehhhhcCCChHHeeeec-cCcceEEEEeccc-cCchHHHHHHHhCcccc
Confidence 46677888888888777766655543 3677777777776 34444444444555554
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=2.8e-24 Score=236.96 Aligned_cols=376 Identities=19% Similarity=0.172 Sum_probs=320.5
Q ss_pred HHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc
Q 003227 360 ILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439 (837)
Q Consensus 360 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 439 (837)
.+.+++++.. ....+.+.++|+.|+++|.+++.++...+..+|.+|+ ...+++..+.+.|++++|++++.+
T Consensus 272 lLlNLAed~~-ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS--------i~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 272 LLLNLAEDPR-VELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS--------IFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHhcChH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc--------CCHHHHHHHHHcCCHHHHHHHhcC
Confidence 4666776665 4555477778999999999999999999999999855 456678899999999999999999
Q ss_pred CChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHH
Q 003227 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLI 519 (837)
Q Consensus 440 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL 519 (837)
++..++..|+++|.|++.+++.|..+++.|.+|.|+.+|.++ ..+..++.+|++++.+++++..+...+++|.+++++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999864 455679999999999999999999999999999988
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhcc
Q 003227 520 FKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599 (837)
Q Consensus 520 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 599 (837)
.. ..++.+...++.++.|++.++.+.+.+.+.|+++.|+.......++- ....++|++.++ +..+..+.
T Consensus 421 l~--~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~---~~~k~~f~-- 489 (708)
T PF05804_consen 421 LE--NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHD---GPLKELFV-- 489 (708)
T ss_pred Hh--CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcC---chHHHHHH--
Confidence 64 45566777889999999999999999999999999999876655433 357899999973 23344443
Q ss_pred chHHHHHHHcCCC-CHHHHHHHHHHHHhhcCChhh-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccc
Q 003227 600 GALEALVQLTRSP-HEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN 677 (837)
Q Consensus 600 ~~i~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~ 677 (837)
+.+..|+..+..+ +++....++++|+||+..+.. ...+.+++.++.|...|.. ....+++..+++..++.++.++.+
T Consensus 490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~-g~~~dDl~LE~Vi~~gtla~d~~~ 568 (708)
T PF05804_consen 490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP-GASEDDLLLEVVILLGTLASDPEC 568 (708)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC-CCCChHHHHHHHHHHHHHHCCHHH
Confidence 5788888887664 778999999999999976544 5555568999999999986 334567899999999999999999
Q ss_pred hhhhhccCChHHHHHHhcc--CCHHHHHHHHHHHHHHcCCcccHHHHHH-cCCHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 003227 678 CIAIGREGGVAPLIALARS--EAEDVHETAAGALWNLAFNPGNALRIVE-EGGVPALVHLCSSSGSKMARFMAALALAYM 754 (837)
Q Consensus 678 ~~~l~~~~~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l 754 (837)
+..+.+.|.++.|++++++ +|++...+.+.+++++..+++.|..+++ .+++..|++++++.+ +.+|..|-.+|.-+
T Consensus 569 A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N-~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 569 APLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKN-AEIRKVCDNALDII 647 (708)
T ss_pred HHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 9999999999999999954 5789999999999999999999998876 677999999999886 88999999999998
Q ss_pred hCCCC
Q 003227 755 FDGRM 759 (837)
Q Consensus 755 ~~~~~ 759 (837)
++..+
T Consensus 648 ~e~d~ 652 (708)
T PF05804_consen 648 AEYDE 652 (708)
T ss_pred HHhCH
Confidence 87655
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=7.2e-23 Score=225.88 Aligned_cols=391 Identities=19% Similarity=0.141 Sum_probs=314.6
Q ss_pred CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCH
Q 003227 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI 471 (837)
Q Consensus 392 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i 471 (837)
.+.+...|...|.+|+.+ +.....+.+.|+++.|+++|++++.++...++.+|.+|+...+++..+.+.|.+
T Consensus 262 QeqLlrv~~~lLlNLAed--------~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAED--------PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHHHHhcC--------hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 455666777888887743 445678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHH
Q 003227 472 NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA 551 (837)
Q Consensus 472 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 551 (837)
+.|.+++.+++..++..++.+|.||+.+++.|..+++.|.+|.|+.+|. ++..+..++.+|.+++.+++.+..+.
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~-----d~~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK-----DPNFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC-----CCchHHHHHHHHHHhccCHhhHHHHh
Confidence 9999999999999999999999999999999999999999999999994 34566779999999999999999999
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH-cCCCCHHHHHHHHHHHHhhcCC
Q 003227 552 LAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL-TRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 552 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
..++++.+++++..++++.+...++..+.|++. ++.+...+.+.++++.|+.. ++..++- ....++|+|.|
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~----~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h 480 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLAL----NKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQH 480 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhc----CHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhc
Confidence 999999999988877667888889999999999 66777888888999999977 4545543 34689999999
Q ss_pred h-hhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCc-cchhhhhccCChHHHHHHhccC--CHHHHHHHH
Q 003227 631 D-RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE-ANCIAIGREGGVAPLIALARSE--AEDVHETAA 706 (837)
Q Consensus 631 ~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~-~~~~~l~~~~~i~~L~~lL~s~--~~~v~~~a~ 706 (837)
+ +.+..+.+ .+..|+.++.. ..+++...+++++|+|++..+ .....+.+.+.+|.|.+.|..+ .+++...++
T Consensus 481 ~~~~k~~f~~--~i~~L~~~v~~--~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V 556 (708)
T PF05804_consen 481 DGPLKELFVD--FIGDLAKIVSS--GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV 556 (708)
T ss_pred CchHHHHHHH--HHHHHHHHhhc--CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH
Confidence 7 55655543 68888888876 468899999999999999654 4445555679999999999654 467999999
Q ss_pred HHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCC-cHHHHHHHHHHHHHhhCCCCcchhhhccCccCcccccchhHHHHHH
Q 003227 707 GALWNLAFNPGNALRIVEEGGVPALVHLCSSSG-SKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMA 785 (837)
Q Consensus 707 ~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~aL~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a 785 (837)
..++.++.++.....+.+.|.++.|++++.... +++.....+-+...+....+..-.++ + +. .+
T Consensus 557 i~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll----~---------~~--~~ 621 (708)
T PF05804_consen 557 ILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLL----K---------ET--EI 621 (708)
T ss_pred HHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHH----h---------cc--ch
Confidence 999999999999999999999999999998753 45566667777777766543211010 0 01 13
Q ss_pred HHHHHHHHHhcCChhHHHHHHhccchhhhHHHHHHhhh
Q 003227 786 LKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARI 823 (837)
Q Consensus 786 ~~~l~~~~l~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 823 (837)
..-+..+ +.++|+++|+.+-.+.-+..-.+..+.++|
T Consensus 622 ~~ylidL-~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 622 PAYLIDL-MHDKNAEIRKVCDNALDIIAEYDEEWAERI 658 (708)
T ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence 3445555 777888888776666555555554444444
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.91 E-value=1.4e-22 Score=217.12 Aligned_cols=368 Identities=25% Similarity=0.265 Sum_probs=301.3
Q ss_pred HHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHh
Q 003227 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (837)
Q Consensus 376 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (837)
|...-.|..+.||.+.++.+|..|+..+..+|+.+.+. +..+.+.|+|+.||.+|++.+.++|..|+++|.|+
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~i-------k~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKI-------KSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNL 302 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHH-------HHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence 66666788999999999999999999999999876654 66899999999999999999999999999999999
Q ss_pred cc---ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCC-------
Q 003227 456 SV---NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS------- 524 (837)
Q Consensus 456 ~~---~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~------- 524 (837)
.. +++++-.|.+.+||+.++++|+. .|.++++....+||||+.++..+..++.. ++..|.+-+-.+++
T Consensus 303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~ 381 (717)
T KOG1048|consen 303 VFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPA 381 (717)
T ss_pred hcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCc
Confidence 98 33589999999999999999987 79999999999999999998888777766 67777765543232
Q ss_pred C----CHHHHHHHHHHHHHhhc-CCCchHHHHhc-CcHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcCCCC-CC--
Q 003227 525 G----GDGVLERAAGALANLAA-DDKCSMEVALA-GGVHALVMLARS-----CKFEGVQEQAARALANLAAHGDS-NS-- 590 (837)
Q Consensus 525 ~----~~~~~~~a~~~L~~l~~-~~~~~~~l~~~-g~i~~L~~ll~~-----~~~~~~~~~a~~~L~~l~~~~~~-~~-- 590 (837)
. +.++..++.++|+|++. ..+.++.+.+. |.|+.|+..++. ..+....++|+..++|++..-+. .+
T Consensus 382 ~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~ 461 (717)
T KOG1048|consen 382 PRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPK 461 (717)
T ss_pred ccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHh
Confidence 1 35678899999999998 68889999988 889999998873 22355668999999999864210 00
Q ss_pred -----------------------------------------------cccchhhccchHHHHHHHcC-CCCHHHHHHHHH
Q 003227 591 -----------------------------------------------NNSAVGQEAGALEALVQLTR-SPHEGVRQEAAG 622 (837)
Q Consensus 591 -----------------------------------------------~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~ 622 (837)
.....+....+|..-..++. +.++.+.+++++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaG 541 (717)
T KOG1048|consen 462 YRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAG 541 (717)
T ss_pred hhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhh
Confidence 00000112234555445554 347889999999
Q ss_pred HHHhhcCCh-----hhHHHH-HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhcc
Q 003227 623 ALWNLSFDD-----RNREAI-AAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS 696 (837)
Q Consensus 623 ~L~~Ls~~~-----~~~~~l-~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s 696 (837)
+|-||+... ..+..+ .+..+.++|++++.. ++..+...++.+|.|++.+..++..|. .++++.|++.|..
T Consensus 542 aLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~---~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~ 617 (717)
T KOG1048|consen 542 ALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRN---DDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPG 617 (717)
T ss_pred hHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhc---CCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcC
Confidence 999998852 225555 678899999999998 999999999999999999999998888 6799999999964
Q ss_pred C------CHHHHHHHHHHHHHHc-CCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 003227 697 E------AEDVHETAAGALWNLA-FNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (837)
Q Consensus 697 ~------~~~v~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~ 755 (837)
. ++++...++.+|.++. .+..+...+.+.++++.|+.+..+..++.+-+.|...|..+=
T Consensus 618 ~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 618 SGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred CCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3 3789999999999998 588999999999999999999999888888888888887764
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.88 E-value=1.9e-21 Score=215.67 Aligned_cols=364 Identities=25% Similarity=0.311 Sum_probs=290.7
Q ss_pred HHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC---ChhHHHHHHHHHHHhcc-C
Q 003227 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW---REGLQSEAAKAIANLSV-N 458 (837)
Q Consensus 383 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~-~ 458 (837)
.++.++...|++-... .+..+... ++....++..|+++.|+++|--+ +.+.+..|-.+|.|+.. .
T Consensus 201 sllsml~t~D~ee~ar---~fLemSss--------~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq 269 (2195)
T KOG2122|consen 201 SLLSMLGTDDEEEMAR---TFLEMSSS--------PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ 269 (2195)
T ss_pred HHhhhcccCCHHHHHH---HHHHhccC--------chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC
Confidence 4666676666554322 23322222 33456799999999999999753 56788999999999988 4
Q ss_pred hHHHHHHHHcCCHHHHHHHH----------hcC--------CHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLA----------RSM--------NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL----------~~~--------~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~ 520 (837)
++.+..-.+..++..|-++. ... +.--...|+.+|..++.+++.|..+.+.|++..+.+++.
T Consensus 270 PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~ 349 (2195)
T KOG2122|consen 270 PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQ 349 (2195)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHH
Confidence 55444434444444443332 111 111234788899999999999999999999999999885
Q ss_pred hh---C------CCCHHHHHHHHHHHHHhhc-CCCchHHHHhc-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC
Q 003227 521 KW---S------SGGDGVLERAAGALANLAA-DDKCSMEVALA-GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (837)
Q Consensus 521 ~~---~------~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~-g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 589 (837)
-- + .....+++.|..+|.||+. +..++..+... |++..+|..|.+.. +++....+.+|+||+|..+.+
T Consensus 350 vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~n 428 (2195)
T KOG2122|consen 350 VDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSN 428 (2195)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhcccccccc
Confidence 21 1 1123689999999999999 45677777766 89999999999876 788899999999999987544
Q ss_pred CcccchhhccchHHHHHHH-cCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHH-cCCHHHHHHHHhh-cCCCCHHHHHHHH
Q 003227 590 SNNSAVGQEAGALEALVQL-TRSPHEGVRQEAAGALWNLSFD-DRNREAIAA-AGGVEALVVLAQS-CSNASPGLQERAA 665 (837)
Q Consensus 590 ~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~-~g~i~~L~~ll~~-~~~~~~~v~~~A~ 665 (837)
.+..+.+.|.+..|+.. ++...+...+..+.+||||+.| .+|+..|.. .|++..|+.+|.- +.+..-.+.+.|.
T Consensus 429 --mKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaG 506 (2195)
T KOG2122|consen 429 --MKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAG 506 (2195)
T ss_pred --HHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCc
Confidence 47888899999999987 7777888899999999999999 788888877 6999999999964 2246678899999
Q ss_pred HHHHhccc----CccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCc
Q 003227 666 GALWGLSV----SEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGS 740 (837)
Q Consensus 666 ~~L~~l~~----~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~ 740 (837)
++|.|.+. .+.+|+.+.++.++..|++.|++.+-.++.+++++||||+. ++..++.+++.|+++.|..++++.+
T Consensus 507 GILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh- 585 (2195)
T KOG2122|consen 507 GILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH- 585 (2195)
T ss_pred cHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-
Confidence 99999874 58889999999999999999999999999999999999976 8999999999999999999999987
Q ss_pred HHHHHHHHHHHHHhhCCCCcc
Q 003227 741 KMARFMAALALAYMFDGRMDE 761 (837)
Q Consensus 741 ~~~~~~a~~aL~~l~~~~~~~ 761 (837)
.++-+.++.||.|+...++..
T Consensus 586 kMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 586 KMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhhhhhHHHHHHHHhcCCchh
Confidence 889999999999999998744
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=1.5e-19 Score=194.12 Aligned_cols=322 Identities=26% Similarity=0.288 Sum_probs=259.3
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc---cchH
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE---EHKG 504 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~---~~~~ 504 (837)
-+|..+.+|.+.++.+|-.|+.-+..++. +.+.+..+.+.|||+.|+.++.+...+++..|+++|.||.... +++-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 36788999999999999999999999999 8899999999999999999999999999999999999999743 6899
Q ss_pred HHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcC--------C-----CHHH
Q 003227 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC--------K-----FEGV 571 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~--------~-----~~~~ 571 (837)
.+.+.+|++.++++++ ...|.++++.+.++||||++.+..+..++.. ++..|..-+-.+ . +.++
T Consensus 314 ai~~~~Gv~~l~~~Lr--~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLR--HTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred hhhhcCChHHHHHHHH--hhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccee
Confidence 9999999999999998 5688999999999999999998888777654 444444433211 1 2567
Q ss_pred HHHHHHHHHHHhcCCCCCCcccchh-hccchHHHHHHHcCC------CCHHHHHHHHHHHHhhcCChh------hH----
Q 003227 572 QEQAARALANLAAHGDSNSNNSAVG-QEAGALEALVQLTRS------PHEGVRQEAAGALWNLSFDDR------NR---- 634 (837)
Q Consensus 572 ~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~~Ls~~~~------~~---- 634 (837)
...+.++|+|++.. ..+.+..+ ...|.|+.|+..++. .+....++++.+|.||+..-+ .+
T Consensus 391 f~n~tgcLRNlSs~---~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSA---GQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred eehhhhhhccccch---hHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 78999999999986 33444444 467889999988763 367788999999999976422 00
Q ss_pred ----------------------HH----------------------HHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 003227 635 ----------------------EA----------------------IAAAGGVEALVVLAQSCSNASPGLQERAAGALWG 670 (837)
Q Consensus 635 ----------------------~~----------------------l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~ 670 (837)
.. +....+|...+.++.. +.+..+.++++++|-|
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~--s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL--SKNDNTLEASAGALQN 545 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH--hcchHHHHHhhhhHhh
Confidence 00 1111235555666654 4788999999999999
Q ss_pred cccC-----ccchhhh-hccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCc----
Q 003227 671 LSVS-----EANCIAI-GREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGS---- 740 (837)
Q Consensus 671 l~~~-----~~~~~~l-~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~---- 740 (837)
++.. ...+..+ .++.++++|+++|+.+++.|...++.+|.||+.++.++..|- .++++.|++.|..+..
T Consensus 546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~ 624 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSL 624 (717)
T ss_pred hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCc
Confidence 9853 3344445 778999999999999999999999999999999999998887 6899999999987655
Q ss_pred -HHHHHHHHHHHHHhhCCCC
Q 003227 741 -KMARFMAALALAYMFDGRM 759 (837)
Q Consensus 741 -~~~~~~a~~aL~~l~~~~~ 759 (837)
+++-..++.+|.++...+.
T Consensus 625 sedtv~~vc~tl~niv~~~~ 644 (717)
T KOG1048|consen 625 SEDTVRAVCHTLNNIVRKNV 644 (717)
T ss_pred hHHHHHHHHHhHHHHHHHhH
Confidence 6677788888888876544
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.82 E-value=1.2e-18 Score=193.87 Aligned_cols=339 Identities=23% Similarity=0.235 Sum_probs=267.3
Q ss_pred hcCcCchhhHHHhhhHHHHHHhhhcC---CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHH-------H
Q 003227 366 ESNPQGLDDFWLKQGAGLLLSLMQST---QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLL-------D 435 (837)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv-------~ 435 (837)
..+++.+..+++.+.+|.|+++|+-. +.+.+..|-.+|.++.....+. ...+..+.-...++.|. .
T Consensus 222 Sss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~----kr~RRE~kvL~lLeQIraYC~~~~~ 297 (2195)
T KOG2122|consen 222 SSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDE----KRGRREKKVLHLLEQIRAYCETCWT 297 (2195)
T ss_pred ccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcch----hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666767888899999999543 4578899999999999876654 11122221111122111 1
Q ss_pred HHhcCC-------hhHHH-HHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc------------CCHHHHHHHHHHHHh
Q 003227 436 LAKSWR-------EGLQS-EAAKAIANLSVNAKVAKAVAEEGGINILAVLARS------------MNRLVAEEAAGGLWN 495 (837)
Q Consensus 436 lL~~~~-------~~~~~-~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~------------~~~~~~~~a~~~L~~ 495 (837)
.+.... .+-+. .|+.+|.+++.++++|..+.+.||++++-+|+.. ....++.+|..+|.|
T Consensus 298 ~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTN 377 (2195)
T KOG2122|consen 298 WLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTN 377 (2195)
T ss_pred HHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc
Confidence 122211 12244 7889999999999999999999999999888742 145689999999999
Q ss_pred hccCc-cchHHHHhh-CCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CCchHHHHhcCcHHHHHHHHhcCCCHHH
Q 003227 496 LSVGE-EHKGAIADA-GGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKCSMEVALAGGVHALVMLARSCKFEGV 571 (837)
Q Consensus 496 l~~~~-~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~ 571 (837)
|+..+ .++..++.. |.+..+|..|. +..+++..-.+.+|+||++. ...+..+.+.|-+..|+........+..
T Consensus 378 LTFGDv~NKa~LCs~rgfMeavVAQL~---s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsT 454 (2195)
T KOG2122|consen 378 LTFGDVANKATLCSQRGFMEAVVAQLI---SAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKEST 454 (2195)
T ss_pred cccccccchhhhhhhhhHHHHHHHHHh---cChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccch
Confidence 99865 678888754 67999999995 47778999999999999994 4556778888999999986554444667
Q ss_pred HHHHHHHHHHHhcCCCCCCcccchhh-ccchHHHHHHHcCCC----CHHHHHHHHHHHHhhcCC----hhhHHHHHHcCC
Q 003227 572 QEQAARALANLAAHGDSNSNNSAVGQ-EAGALEALVQLTRSP----HEGVRQEAAGALWNLSFD----DRNREAIAAAGG 642 (837)
Q Consensus 572 ~~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~i~~L~~lL~~~----~~~~~~~a~~~L~~Ls~~----~~~~~~l~~~g~ 642 (837)
....+.+|+||+.+ ..+|+..+. -.|++.+|+.+|..+ .-.+.+.|-++|.|++.+ .++|+.+.++.+
T Consensus 455 LKavLSALWNLSAH---cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC 531 (2195)
T KOG2122|consen 455 LKAVLSALWNLSAH---CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC 531 (2195)
T ss_pred HHHHHHHHhhhhhc---ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH
Confidence 78999999999998 455555554 468999999999765 456888999999998764 677999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-CccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcc
Q 003227 643 VEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG 717 (837)
Q Consensus 643 i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 717 (837)
+..|++.|++ .+-.+..+|+++||||+. +++.++.+++.|+++.|..++++.+..+.+.++.+|.||..+..
T Consensus 532 Lq~LLQ~LKS---~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 532 LQTLLQHLKS---HSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHHHHhhh---cceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999998 899999999999999985 69999999999999999999999999999999999999988653
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.82 E-value=1.8e-20 Score=185.59 Aligned_cols=235 Identities=22% Similarity=0.301 Sum_probs=196.3
Q ss_pred cCChHhHHHHHhhcHHHHHHhcCCCcccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchH----HHHHcCCCccE
Q 003227 54 CLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS----IIHLQARNLRE 129 (837)
Q Consensus 54 ~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~ 129 (837)
+++......++.+|+.|+.+...++ ..+++..++++++-|++|+.|+++.|..... .....|++++.
T Consensus 176 ~iTd~s~~sla~~C~~l~~l~L~~c---------~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~ 246 (483)
T KOG4341|consen 176 KITDSSLLSLARYCRKLRHLNLHSC---------SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEK 246 (483)
T ss_pred eccHHHHHHHHHhcchhhhhhhccc---------chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhh
Confidence 6666777799999999999988774 3467888889999999999999999865533 22336777888
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccE
Q 003227 130 LSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTD 209 (837)
Q Consensus 130 L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~ 209 (837)
+.+.+|....++.+..+...++-+.++++. .|+.++|++++.++.+|..|+.|..++|..++|..+..++++|++|+.
T Consensus 247 ~~~kGC~e~~le~l~~~~~~~~~i~~lnl~--~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~ 324 (483)
T KOG4341|consen 247 LSLKGCLELELEALLKAAAYCLEILKLNLQ--HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQV 324 (483)
T ss_pred hhhcccccccHHHHHHHhccChHhhccchh--hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEE
Confidence 888889888888888888888888888884 688899999999999999999999999988999999999999999999
Q ss_pred EEecCCCCCChHHh----hCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccC-CCCHHHHHHHHh---cCcccc
Q 003227 210 IGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT-DVGPITISRLLT---SSKSLK 281 (837)
Q Consensus 210 L~l~~~~~~~~~~l----~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~-~i~~~~l~~l~~---~~~~L~ 281 (837)
|.+++|..+++.++ .+++.|+.|++.+|..++|..+.++..+|+.|+.|.+++| .++|+++..+.. +...|.
T Consensus 325 l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~ 404 (483)
T KOG4341|consen 325 LELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE 404 (483)
T ss_pred EeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence 99999988898776 4778999999999988888888888899999999999987 678888877755 457788
Q ss_pred cccccccccccchhHHHH
Q 003227 282 VLCALNCPVLEEENNISA 299 (837)
Q Consensus 282 ~l~l~~c~~i~~~~~~~~ 299 (837)
++.+.+|+.++|..+..+
T Consensus 405 ~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 405 VLELDNCPLITDATLEHL 422 (483)
T ss_pred eeeecCCCCchHHHHHHH
Confidence 888999998888875444
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=7.2e-17 Score=154.68 Aligned_cols=321 Identities=16% Similarity=0.192 Sum_probs=263.7
Q ss_pred HhCcHHHHHHHHh---cCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhc-cC
Q 003227 426 KDGGIRLLLDLAK---SWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLS-VG 499 (837)
Q Consensus 426 ~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~-~~ 499 (837)
+.|+.+.++.++. +++..+-..++.+|..+... .+.+.+..|+..++.+|.. ++.++.......+..-+ .+
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~---qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHK---QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC---CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 4566666665554 36777778888888777763 3567788899999999864 56777777777777766 47
Q ss_pred ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch----------HHHHhcCcHHHHHHHHhcCCCH
Q 003227 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS----------MEVALAGGVHALVMLARSCKFE 569 (837)
Q Consensus 500 ~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~----------~~l~~~g~i~~L~~ll~~~~~~ 569 (837)
+.+++.+++.+..+.+...|.. .+...+.+...++++.|..+++.| ..++..|++..|++.++-.-++
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~--~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNR--EGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcc--cCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 7899999999999999988863 344478889999999999877653 4577788899999999988779
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC-CHH---HHHHHHHHHHhhcCChhhHHHHHHcCCHHH
Q 003227 570 GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP-HEG---VRQEAAGALWNLSFDDRNREAIAAAGGVEA 645 (837)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~---~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~ 645 (837)
++...++.+|..++. +.+.+..+.+.|++..|++++.+. +.. ..+.++..|+.|+.++.++..|++.|+.+.
T Consensus 257 ~~L~~l~~tl~~lAV----r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ 332 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAV----RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDK 332 (461)
T ss_pred cHHHHHHHHHHHHHH----HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHH
Confidence 999999999999998 678888899999999999999874 333 445688899999999999999999999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhccc-CccchhhhhccCChHHHHHHhccC--CHHHHHHHHHHHHHHcCCcccHHHH
Q 003227 646 LVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSE--AEDVHETAAGALWNLAFNPGNALRI 722 (837)
Q Consensus 646 L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~lL~s~--~~~v~~~a~~~L~~l~~~~~~~~~i 722 (837)
++.++.. +..+|.+.++++.++..++- .|++...+++.|+-...++.++.. ...+|++|+++++|+.....+...+
T Consensus 333 ii~l~~~-h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~ 411 (461)
T KOG4199|consen 333 IITLALR-HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTI 411 (461)
T ss_pred HHHHHHH-cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 9999877 78999999999999999995 688888999999999999999653 3579999999999998866555566
Q ss_pred HHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 723 VEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 723 ~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
+=..|++.|+..-...+ +..+..|..||..|.-+
T Consensus 412 ~l~~GiE~Li~~A~~~h-~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 412 LLANGIEKLIRTAKANH-ETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHhccHHHHHHHHHhcC-ccHHHHHHHHHHhcCcc
Confidence 66688999998887765 77888888999988654
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.4e-16 Score=151.15 Aligned_cols=314 Identities=17% Similarity=0.191 Sum_probs=262.1
Q ss_pred hcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc--CChhHHHHHHHHHHHhcc-ChHHHHHH
Q 003227 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLSV-NAKVAKAV 465 (837)
Q Consensus 389 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~-~~~~~~~i 465 (837)
.+++..+...+..+|..+....+ .+.+..++..++.+|.. ++.++-......+..-+. ++.+|+.|
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qp-----------dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~ 185 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQP-----------DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLF 185 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCc-----------chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56677788888888888765443 47888999999999865 678888888999988777 78899999
Q ss_pred HHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCcc----------chHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHH
Q 003227 466 AEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEE----------HKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (837)
Q Consensus 466 ~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~----------~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (837)
.+.+.++.+.+.|.. +...+.+.++++++-+..+++ ..+.+.+.|++..|++.++. .-++.+....+
T Consensus 186 m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A--~~dp~~L~~l~ 263 (461)
T KOG4199|consen 186 MELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA--GIDPDSLVSLS 263 (461)
T ss_pred HHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc--cCCccHHHHHH
Confidence 999999999988765 344577788889998887653 45788899999999999985 44578899999
Q ss_pred HHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHH---HHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcC-
Q 003227 535 GALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQ---EQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR- 610 (837)
Q Consensus 535 ~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~---~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~- 610 (837)
.+|..++..++.+..+.+.|++..|+.++.++++...+ +.++..|+.++- +..++..+.+.|+.+.++.++.
T Consensus 264 ~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG----~DsvKs~IV~~gg~~~ii~l~~~ 339 (461)
T KOG4199|consen 264 TTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG----SDSVKSTIVEKGGLDKIITLALR 339 (461)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC----CCchHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999999987666655 567777888876 6778889999999999998863
Q ss_pred -CCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCCh
Q 003227 611 -SPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGV 687 (837)
Q Consensus 611 -~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i 687 (837)
..+|.+.+.++.++.-|+.- +++...+++.|+-...++.++. ++....++.+|++++.|+... .+++..+.. .|+
T Consensus 340 h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmka-hP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~Gi 417 (461)
T KOG4199|consen 340 HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKA-HPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGI 417 (461)
T ss_pred cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccH
Confidence 45888999999999988876 7788889999999999999988 677888999999999999975 555555554 479
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHH
Q 003227 688 APLIALARSEAEDVHETAAGALWNLAFNPGNALR 721 (837)
Q Consensus 688 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~ 721 (837)
+.|+..-++.++.+...|-.+|+.|..+..+++.
T Consensus 418 E~Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 418 EKLIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 9999999999999999999999999877665543
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.76 E-value=4.4e-16 Score=154.15 Aligned_cols=379 Identities=18% Similarity=0.129 Sum_probs=290.2
Q ss_pred HHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc
Q 003227 360 ILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439 (837)
Q Consensus 360 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 439 (837)
.++.....|.+.... +..+|+ ...+..+...+..|+...+....+. ......-+++++++.|.+...|
T Consensus 31 ~~qa~a~~nt~t~ek-~~~~~i-------~~~~~tv~~~qssC~A~~sk~ev~r----~~F~~~~I~a~~le~Lrq~psS 98 (604)
T KOG4500|consen 31 LLQALAQNNTETSEK-IQASGI-------MTASDTVYLFQSSCLADRSKNEVER----SLFRNYCIDAEALELLRQTPSS 98 (604)
T ss_pred HHHhHhhhChhhHHH-HHhcce-------eeccchhhhhhHHHHHHHhhhHHHH----HHHHHHhhHHHHHHHHHhCCCC
Confidence 344455555545555 333332 3345567777777777765433221 1222234667888999999999
Q ss_pred CChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc----C---CHHHHHHHHHHHHhhcc-CccchHHHHhhC
Q 003227 440 WREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS----M---NRLVAEEAAGGLWNLSV-GEEHKGAIADAG 510 (837)
Q Consensus 440 ~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~----~---~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g 510 (837)
++.++-..+.++|+|+++ ++++|..|.+.||-+.++++|+. . +.+....+.+.|.|-.- +++.+.++++.|
T Consensus 99 ~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~g 178 (604)
T KOG4500|consen 99 PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAG 178 (604)
T ss_pred CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcc
Confidence 999999999999999999 67999999999998888888764 2 34566677788888774 568999999999
Q ss_pred CHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC
Q 003227 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (837)
Q Consensus 511 ~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (837)
.++.|...+.- +..+....+.......|+.+ .+.......+......+++++.....++..+.+...+...+.
T Consensus 179 Vl~tL~~~~~I-~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae---- 253 (604)
T KOG4500|consen 179 VLNTLAITYWI-DWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE---- 253 (604)
T ss_pred cHHHHHHHhhc-ccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc----
Confidence 99999988864 56677777777777777765 333445555667778888888877668888888888888887
Q ss_pred CCcccchhhccchHHHHHHHcCC-CC-------HHHHHHHHHHHHhhcCChhhHHHHHHcC-CHHHHHHHHhhcCCCCHH
Q 003227 589 NSNNSAVGQEAGALEALVQLTRS-PH-------EGVRQEAAGALWNLSFDDRNREAIAAAG-GVEALVVLAQSCSNASPG 659 (837)
Q Consensus 589 ~~~~~~~~~~~~~i~~L~~lL~~-~~-------~~~~~~a~~~L~~Ls~~~~~~~~l~~~g-~i~~L~~ll~~~~~~~~~ 659 (837)
+...+-.+.+.|.++.++.+++. ++ -.....++....-+...++.-+.+...+ .++.+...+.+ .+..
T Consensus 254 nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S---~d~~ 330 (604)
T KOG4500|consen 254 NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS---DDSN 330 (604)
T ss_pred CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC---Cchh
Confidence 67788888999999999999865 21 1233345555555666666666666655 78888888887 8999
Q ss_pred HHHHHHHHHHhcccCccchhhhhccCChHHHHHHhc-----cCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHH
Q 003227 660 LQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-----SEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHL 734 (837)
Q Consensus 660 v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~-----s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~l 734 (837)
....+.-+++|++..+.++..+++.+.+..|++.+. +++.+++.+++.+|+|+.....++..++..|..+.++..
T Consensus 331 l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~ 410 (604)
T KOG4500|consen 331 LITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQ 410 (604)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHH
Confidence 999999999999999999999999999999999983 366789999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 735 CSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 735 l~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
+.... |.++-.-...|+-+.++.+
T Consensus 411 lk~~~-ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 411 LKLAS-PPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred HHhcC-CcchHHHHHHHHHHHhchH
Confidence 99875 6677777888887777655
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.70 E-value=6e-15 Score=146.21 Aligned_cols=366 Identities=18% Similarity=0.125 Sum_probs=281.7
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc----C---ChhHHHHHHHHH
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS----W---REGLQSEAAKAI 452 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~----~---~~~~~~~a~~~L 452 (837)
.+..|.+...+++.++..++.++|+++|+.+.++ +..+.+.||-..++..|+. + +++.-..+...|
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~-------R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l 160 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNEN-------RAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVL 160 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchh-------HHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHH
Confidence 3677777778888999999999999999998877 7789999998888888875 2 235566788888
Q ss_pred HHhcc-ChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhcc--CccchHHHHhhCCHHHHHHHHHhhCCCCH
Q 003227 453 ANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSV--GEEHKGAIADAGGVKALVDLIFKWSSGGD 527 (837)
Q Consensus 453 ~~l~~-~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~ 527 (837)
.|... +++.+.++.+.|.++.|...+-- .+....+.......++.. .+.......+......+++++. ..-++
T Consensus 161 ~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~--~~v~~ 238 (604)
T KOG4500|consen 161 HNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLP--SMVRE 238 (604)
T ss_pred HHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHH--Hhhcc
Confidence 88776 67899999999999999988743 566666776666666664 2233444455556667778876 45677
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCC-------HHHHHHHHHHHHHHhcCCCCCCcccchhhccc
Q 003227 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKF-------EGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600 (837)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 600 (837)
++.+....+|...+.++..+-.+++.|.+..++.+++.-.+ ......++..+.-+..+++ ..+.......
T Consensus 239 d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe---SMq~L~~~p~ 315 (604)
T KOG4500|consen 239 DIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE---SMQKLHADPQ 315 (604)
T ss_pred chhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch---HHHHHhcCcH
Confidence 88999999999999999999999999999999999886211 1222344444444554322 1122333334
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhh--cCCCCHHHHHHHHHHHHhcccCccch
Q 003227 601 ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQS--CSNASPGLQERAAGALWGLSVSEANC 678 (837)
Q Consensus 601 ~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~--~~~~~~~v~~~A~~~L~~l~~~~~~~ 678 (837)
+++.+...+.+.+...+..+.-+++|+++.++++-.+++.|.+..|+.++.. .-+++.+++.+++.+|+|+.....++
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 8899999999999999999999999999999999999999999999999854 23578889999999999999999999
Q ss_pred hhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcc-cHHHHHH-cCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 679 IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG-NALRIVE-EGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 679 ~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
..+...|..+.++..++...|.++..-.+.++-+....+ ...++.+ ..-+..|++...+++-..+.-...+.|..+..
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk 475 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK 475 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH
Confidence 999999999999999999999999888888887765433 2223333 22367788888877655566666777777765
Q ss_pred C
Q 003227 757 G 757 (837)
Q Consensus 757 ~ 757 (837)
.
T Consensus 476 H 476 (604)
T KOG4500|consen 476 H 476 (604)
T ss_pred h
Confidence 4
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.8e-14 Score=139.68 Aligned_cols=322 Identities=17% Similarity=0.109 Sum_probs=268.2
Q ss_pred CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCH
Q 003227 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI 471 (837)
Q Consensus 392 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i 471 (837)
.+.....|...|.+|+.+... -.+++....+..||+.|+.++.++.......|..++--.+++..+.+.|.|
T Consensus 276 QeqLLrva~ylLlNlAed~~~--------ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iv 347 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDISV--------ELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIV 347 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhhH--------HHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHH
Confidence 445566677788887754332 346888899999999999999999999999999999988999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHH
Q 003227 472 NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA 551 (837)
Q Consensus 472 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 551 (837)
+.|+++....+++++...+..+.|++.+...+..++..|.+|.++.++ +++.-..-|+..+..++.+++.+..+.
T Consensus 348 eKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll-----~~d~~~~iA~~~lYh~S~dD~~K~Mfa 422 (791)
T KOG1222|consen 348 EKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLL-----DSDTKHGIALNMLYHLSCDDDAKAMFA 422 (791)
T ss_pred HHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHh-----CCcccchhhhhhhhhhccCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 344445668889999999999999888
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH-cCCCCHHHHHHHHHHHHhhcCC
Q 003227 552 LAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL-TRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 552 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
-..+|+.+.+.+-++.+.++-...+..-.|++. +..+...+.+..++..|+.. ++..++-+. ..++|++.|
T Consensus 423 yTdci~~lmk~v~~~~~~~vdl~lia~ciNl~l----nkRNaQlvceGqgL~~LM~ra~k~~D~lLm----K~vRniSqH 494 (791)
T KOG1222|consen 423 YTDCIKLLMKDVLSGTGSEVDLALIALCINLCL----NKRNAQLVCEGQGLDLLMERAIKSRDLLLM----KVVRNISQH 494 (791)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHh----ccccceEEecCcchHHHHHHHhcccchHHH----HHHHHhhhc
Confidence 889999999988777767777777777788888 67777788888888888865 677776543 468999999
Q ss_pred hh-hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccC--CHHHHHHHH
Q 003227 631 DR-NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSE--AEDVHETAA 706 (837)
Q Consensus 631 ~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~--~~~v~~~a~ 706 (837)
+. .+..++++ +..|...+.. .+++....+++++|+|+... -+....+.+...+|.+-..|+.+ ..+.+....
T Consensus 495 eg~tqn~Fidy--vgdLa~i~~n--d~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~v 570 (791)
T KOG1222|consen 495 EGATQNMFIDY--VGDLAGIAKN--DNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIV 570 (791)
T ss_pred cchHHHHHHHH--HHHHHHHhhc--CchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHH
Confidence 65 56666665 7777777765 47778888999999999975 55666677788999998888653 456888888
Q ss_pred HHHHHHcCCcccHHHHHHcCCHHHHHHHHhcC
Q 003227 707 GALWNLAFNPGNALRIVEEGGVPALVHLCSSS 738 (837)
Q Consensus 707 ~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~ 738 (837)
.++..++.+..+...+...+.++.|+++|+..
T Consensus 571 i~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 571 IACGTMARDLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred HHhhhhhhhhHHHHHhCccccHHHHHHHHHhh
Confidence 88899988888888888999999999999874
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.66 E-value=9.4e-14 Score=156.27 Aligned_cols=560 Identities=18% Similarity=0.188 Sum_probs=312.7
Q ss_pred cccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccc-----hH-------HHH-----HcCCCccEEecCCCCCCCHH
Q 003227 79 LWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESA-----DS-------IIH-----LQARNLRELSGDYCRKITDA 141 (837)
Q Consensus 79 ~~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-----~~-------~~~-----~~~~~L~~L~l~~c~~~~~~ 141 (837)
..+++++.+.......+..+.+.+ |++|.+.+.... +. ++. .+-.+|++|++++-..++..
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 446788888777777777776654 899988764221 10 111 13469999999997767666
Q ss_pred HHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh-
Q 003227 142 TLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE- 220 (837)
Q Consensus 142 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~- 220 (837)
-...+...+|+|++|.+. ...+..+.+..++.++|+|.+|+++++ ++++- . ..+++++|+.|.+.+-..-+-
T Consensus 139 W~~kig~~LPsL~sL~i~---~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~-GIS~LknLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVIS---GRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--S-GISRLKNLQVLSMRNLEFESYQ 211 (699)
T ss_pred HHHHHhhhCcccceEEec---CceecchhHHHHhhccCccceeecCCC-CccCc--H-HHhccccHHHHhccCCCCCchh
Confidence 667788889999999995 224555568889999999999999999 67653 2 223568999999887533332
Q ss_pred --HHhhCCCCCCEeeccCCCCCCHHH-HHHHH---hcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccch
Q 003227 221 --VALGNVLSVRFLSVAGTSNMKWGV-VSQVW---HKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (837)
Q Consensus 221 --~~l~~l~~L~~L~ls~~~~i~~~~-l~~~~---~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~ 294 (837)
..+-.+++|+.||+|...+..+.. +..+. ..+|+|+.||.||++++...+..+...-|+|+.+.+-+|......
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~~~~~ 291 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLALSAV 291 (699)
T ss_pred hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhccccc
Confidence 356789999999999876655442 22222 468999999999999999999999998899999988776522211
Q ss_pred hHHHHHHhhhhhhhhhhhchHHHHHHhhhhcccccccccccccccCCCCcchHHHHHHHHHHHHHHHHHhhhcCcCchhh
Q 003227 295 NNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDD 374 (837)
Q Consensus 295 ~~~~~~~~~~~l~l~~~~~~~~~l~~l~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~l~~l~s~~l~~l~~~~~~~~~~ 374 (837)
. .....-+..+..+.....+.+.... .| .......+..+..+. ... .....
T Consensus 292 ~----~~~i~~ln~at~~s~i~~L~~~~~l----~r---------------~~~v~~cl~~l~~~~----~~~--~~~~~ 342 (699)
T KOG3665|consen 292 S----STEIRVLNTATLDSSIQALTYYLNL----KR---------------PSEVSRCLNELLDLL----KSL--DSTRE 342 (699)
T ss_pred c----ccCceeeeecchhHHHHHHHHHHHh----cC---------------hHHHHHHHHHHHHHH----HHh--hhhhh
Confidence 1 0011112222222222222222221 11 001111111111111 110 01111
Q ss_pred HHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHH-------H
Q 003227 375 FWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQS-------E 447 (837)
Q Consensus 375 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~-------~ 447 (837)
+.....+..+++.|+......+..+..+|..++......+.. ..-.-++..|+..... .+.++. .
T Consensus 343 ~~~~~~l~~i~~sm~~~~s~~~i~~~~CL~~i~~~~~~~l~~-------~~~~~~l~~LLn~v~~-~~~~~~~~~~~~~~ 414 (699)
T KOG3665|consen 343 YDISECLKLIINSMNTFSSSNQIQGSACLIHIVKHTKQRLSP-------LLVSLLLKVLLNLVEK-LDTLDSNDELTLCN 414 (699)
T ss_pred hhHHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHhhhhccCh-------HHHHHHHHHHHHhhhc-ccccccchhHHHHH
Confidence 122334456666664443366666677777776555432221 1111122233333221 011111 1
Q ss_pred --------------------------HHHHHHHhccChH-------HHHHHHHcCCHHHHHHHH--hcCCHHHHHHHHHH
Q 003227 448 --------------------------AAKAIANLSVNAK-------VAKAVAEEGGINILAVLA--RSMNRLVAEEAAGG 492 (837)
Q Consensus 448 --------------------------a~~~L~~l~~~~~-------~~~~i~~~g~i~~L~~lL--~~~~~~~~~~a~~~ 492 (837)
+...+........ ........+.+..+...+ ....-.....-..+
T Consensus 415 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (699)
T KOG3665|consen 415 SIILLLSLLVSRRKLLSVLDHHEQDNIQQRLTVCLSISTACQVVSITKVNVGELGIVLTLLLRIKLRKIYWCDDVLEFTA 494 (699)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHhhcchhHHHHHHHHHhccchhHHHHHHHHHHHhhccchhhHHHHHHH
Confidence 1111111000000 000001111111111111 11111111111228
Q ss_pred HHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHH--HHHHHHhcCCCH
Q 003227 493 LWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVH--ALVMLARSCKFE 569 (837)
Q Consensus 493 L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~--~L~~ll~~~~~~ 569 (837)
|++++. ++++++.+.+.||+..+...++.+ .+.+++..+++.+.|++...+.+........+. .+-.++...+..
T Consensus 495 l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f--~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 495 LWNITDENPETCKEFLDNGGMKLLFKCLESF--DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHhhhcCCHHHHHHHHhcccHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 889986 569999999999999999999863 778899999999999998665543332222222 333344544444
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHH-HHH
Q 003227 570 GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEA-LVV 648 (837)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~-L~~ 648 (837)
+....|+.+|..+...++. . .. .+. -+.+.+.-..++.... ........+..+.+ +..
T Consensus 573 ersY~~~siLa~ll~~~~~-~--~~----~~~-----------r~~~~~~l~e~i~~~~---~~~~~~~~~~~f~~~~~~ 631 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK-T--TE----CVF-----------RNSVNELLVEAISRWL---TSEIRVINDRSFFPRILR 631 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc-C--cc----ccc-----------hHHHHHHHHHHhhccC---ccceeehhhhhcchhHHH
Confidence 7888999999999886432 1 01 111 1112222122222211 11111222223333 555
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhccc-CccchhhhhccCChHHHHHHhc-cCCHHHHHHHHHHH
Q 003227 649 LAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALAR-SEAEDVHETAAGAL 709 (837)
Q Consensus 649 ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~lL~-s~~~~v~~~a~~~L 709 (837)
++.. +..+..+.+|++++.++.. ++++++.+.+.++++.+.+.-. +...+++..+...+
T Consensus 632 il~~--s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 632 ILRL--SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred Hhcc--cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 5554 5778899999999999996 4778888888888888776642 22344444444433
No 24
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.65 E-value=1.4e-14 Score=142.21 Aligned_cols=243 Identities=22% Similarity=0.214 Sum_probs=197.7
Q ss_pred HhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Q 003227 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 551 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
.+.+-++.|+.+|+...++.+++.+..++.+.+. .+.++..+.+.|+++.+..++.++++.+++.|+.+|.|++.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa----f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA----FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc----ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 4566789999999988889999999999999987 788999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHH
Q 003227 631 DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALW 710 (837)
Q Consensus 631 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~ 710 (837)
.+++..+-. .++.+++...+ .+-+..++..++++|.|++...+.+..+.. .++.++.+|.+++..++..++++|.
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s-~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVS-SPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhc-CCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999888755 47777776655 345789999999999999988888777754 7999999999999999999999999
Q ss_pred HHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcch-hhhcc-CccCcccccchhHHHHHHHHH
Q 003227 711 NLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEF-ALIGT-STESTSKCVSLDGARRMALKH 788 (837)
Q Consensus 711 ~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~-~~i~~-~~~~~~~~~~~~~~~~~a~~~ 788 (837)
||+.+|.....++..+++..++.+++.+.+..+-..+.....++..+..... .+... ..++..- .-..+. +.-.+.
T Consensus 160 nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~-~~~~e~-~~~~~~ 237 (254)
T PF04826_consen 160 NLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLF-SLFGES-SQLAKK 237 (254)
T ss_pred HhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHH-HHHccH-HHHHHH
Confidence 9999999999999999999999999987667788888888999977655331 12211 2222222 222222 133455
Q ss_pred HHHHHHhcCChhHHHHH
Q 003227 789 IEAFVLTFSDPQAFATA 805 (837)
Q Consensus 789 l~~~~l~~~~~~~~~~~ 805 (837)
+.++ ..++||+||..+
T Consensus 238 l~~l-~~h~d~ev~~~v 253 (254)
T PF04826_consen 238 LQAL-ANHPDPEVKEQV 253 (254)
T ss_pred HHHH-HcCCCHHHhhhc
Confidence 6666 678999998653
No 25
>PRK09687 putative lyase; Provisional
Probab=99.64 E-value=6.2e-14 Score=141.48 Aligned_cols=258 Identities=18% Similarity=0.068 Sum_probs=203.6
Q ss_pred hCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHH
Q 003227 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAI 506 (837)
Q Consensus 427 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l 506 (837)
.-.++.|+..|.+++..++..|+.+|..+.... .++.+..+++++++.++..|+++|+.+...+..
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~----------~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGGQD----------VFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCcch----------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 345789999999999999999999998877533 577888889999999999999999999764322
Q ss_pred HhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 003227 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (837)
Q Consensus 507 ~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (837)
....++.|..++. .+.++.|+..|+.+|+++....... ...++..+...+.+.+ +.|+..++.+|..+..
T Consensus 88 -~~~a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~-~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 -QDNVFNILNNLAL--EDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKS-TNVRFAVAFALSVIND-- 157 (280)
T ss_pred -hHHHHHHHHHHHh--cCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCC-HHHHHHHHHHHhccCC--
Confidence 1235667777744 4678899999999999996533211 1124555666777764 8999999999976643
Q ss_pred CCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 003227 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAG 666 (837)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~ 666 (837)
...++.|+.+|.++++.++..|+.+|..+..+.+ .+++.|+.++.+ .++.||..|++
T Consensus 158 ------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D---~~~~VR~~A~~ 214 (280)
T PRK09687 158 ------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQD---KNEEIRIEAII 214 (280)
T ss_pred ------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcC---CChHHHHHHHH
Confidence 4678999999999999999999999999843322 357789999987 99999999999
Q ss_pred HHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHH
Q 003227 667 ALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (837)
Q Consensus 667 ~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~ 746 (837)
+|..+- ...++++|++.+.+++ ++..++.+|.++.. ..++|.|.+++....++.++..
T Consensus 215 aLg~~~----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~ 272 (280)
T PRK09687 215 GLALRK----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITK 272 (280)
T ss_pred HHHccC----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHH
Confidence 998843 3458999999998766 67789999999884 3579999999985556889999
Q ss_pred HHHHHHH
Q 003227 747 AALALAY 753 (837)
Q Consensus 747 a~~aL~~ 753 (837)
|.++|..
T Consensus 273 a~~a~~~ 279 (280)
T PRK09687 273 AIDKLKR 279 (280)
T ss_pred HHHHHhc
Confidence 9888753
No 26
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.9e-13 Score=135.13 Aligned_cols=376 Identities=16% Similarity=0.119 Sum_probs=292.3
Q ss_pred HHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc
Q 003227 360 ILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439 (837)
Q Consensus 360 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 439 (837)
.+++++++...+... .+..-|..|++.|..++.+........|.+|+ +..+++..+.+.|.++.|++++..
T Consensus 286 lLlNlAed~~~ElKM-rrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS--------If~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 286 LLLNLAEDISVELKM-RRKNIVAMLVKALDRSNSSLLTLVIKFLKKLS--------IFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHhhhhhHHHHH-HHHhHHHHHHHHHcccchHHHHHHHHHHHHhh--------hhccchHHHHhccHHHHHHHhcCC
Confidence 456677776644444 56666899999998888888888888888855 444557789999999999999999
Q ss_pred CChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHH
Q 003227 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLI 519 (837)
Q Consensus 440 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL 519 (837)
..++++...+..|.|++.+...|..++..|-+|.+..++.+... ...|+..++.++.++..+..+.....++.++..+
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976432 2357889999999999999999999999999877
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhcc
Q 003227 520 FKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599 (837)
Q Consensus 520 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 599 (837)
-. ..+.++-...+....|++.+..+.+.+++-.++..|++..-...++- ....++|++.+. ...+..++
T Consensus 435 ~~--~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHe---g~tqn~Fi-- 503 (791)
T KOG1222|consen 435 LS--GTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHE---GATQNMFI-- 503 (791)
T ss_pred Hh--cCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhcc---chHHHHHH--
Confidence 53 34455655666666799998888888888788888887554433232 356788888862 22233333
Q ss_pred chHHHHHHHcCCC-CHHHHHHHHHHHHhhcCChh-hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccc
Q 003227 600 GALEALVQLTRSP-HEGVRQEAAGALWNLSFDDR-NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN 677 (837)
Q Consensus 600 ~~i~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~ 677 (837)
..+..|...++.. +++.-..+.++++||...+- -...+-+...+|.+-..|..+. ...+++...+.+++.++.+..+
T Consensus 504 dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga-~eddLvL~~vi~~GT~a~d~~c 582 (791)
T KOG1222|consen 504 DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA-DEDDLVLQIVIACGTMARDLDC 582 (791)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc-cchhhhhHHHHHhhhhhhhhHH
Confidence 4566666666654 56677889999999998744 4556666788999988887633 3445777788888998888888
Q ss_pred hhhhhccCChHHHHHHhcc--CCHHHHHHHHHHHHHHcCCcccHHHHHHcCC-HHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 003227 678 CIAIGREGGVAPLIALARS--EAEDVHETAAGALWNLAFNPGNALRIVEEGG-VPALVHLCSSSGSKMARFMAALALAYM 754 (837)
Q Consensus 678 ~~~l~~~~~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~-i~~L~~ll~~~~~~~~~~~a~~aL~~l 754 (837)
...+...|.++.++++|++ .+++...+.+.+...+..+...+..++++.. -..|++++++.+ ..+|..+-.+|.-+
T Consensus 583 A~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN-~eiRkVCDn~LdIi 661 (791)
T KOG1222|consen 583 ARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKN-AEIRKVCDNALDII 661 (791)
T ss_pred HHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhccc-HHHHHHHHHHHHHH
Confidence 8889999999999999964 5677777777777788778888888887654 667889999876 77888888888777
Q ss_pred hCCCC
Q 003227 755 FDGRM 759 (837)
Q Consensus 755 ~~~~~ 759 (837)
+....
T Consensus 662 ae~d~ 666 (791)
T KOG1222|consen 662 AEHDK 666 (791)
T ss_pred HHhhH
Confidence 66543
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.62 E-value=6.5e-13 Score=146.64 Aligned_cols=341 Identities=16% Similarity=0.128 Sum_probs=262.7
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 458 (837)
+..+.+...|.++++.++..++..|++++..++. ..+.+.+.+.++.++.++.+++..+...|+.+|.+++..
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-------~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-------AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-------HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 4458899999999999999999999987754433 245677899999999999999999999999999999998
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
+.....+.+.+.+..|..++...+..++.++..++.+++. +++....+.+.|.++.++..+. ++|.-++.+++.+|
T Consensus 150 ~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalell 226 (503)
T PF10508_consen 150 PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALELL 226 (503)
T ss_pred chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHHH
Confidence 8888888888889999999988888999999999999986 5678888888999999999995 47778899999999
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHH-----HHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC
Q 003227 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEG-----VQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~-----~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~ 612 (837)
..|+..++....+.+.|+++.|..++.+..... ..........+++... .. ...-.-..++..+.+++.+.
T Consensus 227 ~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~--~~--~v~~~~p~~~~~l~~~~~s~ 302 (503)
T PF10508_consen 227 SELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS--PQ--EVLELYPAFLERLFSMLESQ 302 (503)
T ss_pred HHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC--hH--HHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999998653222 2234446677777631 11 11111134555666777888
Q ss_pred CHHHHHHHHHHHHhhcCChhhHHHH-HHc-CCHHHHHHHHhh-cCCCCHHHHHHHHHHHHhcccC--ccc-------hhh
Q 003227 613 HEGVRQEAAGALWNLSFDDRNREAI-AAA-GGVEALVVLAQS-CSNASPGLQERAAGALWGLSVS--EAN-------CIA 680 (837)
Q Consensus 613 ~~~~~~~a~~~L~~Ls~~~~~~~~l-~~~-g~i~~L~~ll~~-~~~~~~~v~~~A~~~L~~l~~~--~~~-------~~~ 680 (837)
|+..+..|..+++.++...+.+..+ ... +.++..+..... ..++..+++..++.++.++-.. +.. ...
T Consensus 303 d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~ 382 (503)
T PF10508_consen 303 DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITES 382 (503)
T ss_pred ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 9999999999999999998888888 443 344444443322 1237788999999999999432 211 111
Q ss_pred hh---ccCChH-HHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCC-HHHHHH
Q 003227 681 IG---REGGVA-PLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGG-VPALVH 733 (837)
Q Consensus 681 l~---~~~~i~-~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~-i~~L~~ 733 (837)
.. ..+... .++.+++.+=+++|.++...|..++.++-....+....+ +..|++
T Consensus 383 w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 383 WYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 11 123444 677888888899999999999999999888777776444 444444
No 28
>PRK09687 putative lyase; Provisional
Probab=99.59 E-value=4.5e-13 Score=135.22 Aligned_cols=253 Identities=17% Similarity=0.063 Sum_probs=197.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHH
Q 003227 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (837)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (837)
.++.|..+|.+++..++..|+.+|..+... ..++.+..++ .+.++.++..++++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~----------~~~~~l~~ll---~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ----------DVFRLAIELC---SSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc----------hHHHHHHHHH---hCCCHHHHHHHHHHHHhcCCCccc---
Confidence 489999999999999999999999988743 2566777777 458899999999999998754332
Q ss_pred HHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcC
Q 003227 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSF 629 (837)
Q Consensus 550 l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~ 629 (837)
...+++.|..++.+..++.|+..|+.+|.++..... . .....++.+...+.++++.||..|+.+|..+..
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~-------~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-L-------YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-c-------cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 123567777775544459999999999999865321 0 123466778888899999999999999987643
Q ss_pred ChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHH
Q 003227 630 DDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGAL 709 (837)
Q Consensus 630 ~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L 709 (837)
..+++.|+.++.+ +++.+|..|+.+|+.+.... ...++.|+.++.+.++.|+..|+++|
T Consensus 158 ----------~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 158 ----------EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred ----------HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 2378999999987 88999999999999983321 13678899999999999999999999
Q ss_pred HHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcchhhhccCccCcccccchhHHHHHHHHHH
Q 003227 710 WNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHI 789 (837)
Q Consensus 710 ~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l 789 (837)
..+.. ..+++.|++.+.+++ ++..|+.||+.+... .++..|
T Consensus 217 g~~~~----------~~av~~Li~~L~~~~---~~~~a~~ALg~ig~~--------------------------~a~p~L 257 (280)
T PRK09687 217 ALRKD----------KRVLSVLIKELKKGT---VGDLIIEAAGELGDK--------------------------TLLPVL 257 (280)
T ss_pred HccCC----------hhHHHHHHHHHcCCc---hHHHHHHHHHhcCCH--------------------------hHHHHH
Confidence 98762 367999999999754 678899999999764 356666
Q ss_pred HHHHHhcCChhHHHHHHhc
Q 003227 790 EAFVLTFSDPQAFATAAAS 808 (837)
Q Consensus 790 ~~~~l~~~~~~~~~~~~~~ 808 (837)
.+++-.+.|+.++..+..+
T Consensus 258 ~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 258 DTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred HHHHhhCCChhHHHHHHHH
Confidence 6663336688888766544
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.59 E-value=6.6e-13 Score=157.48 Aligned_cols=275 Identities=23% Similarity=0.161 Sum_probs=219.3
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccCh
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 459 (837)
.++.|++.|+++++.+|..|+..|+.+ ...++++.|+..|+++++.++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~------------------~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~ 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTET------------------TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhh------------------cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999999999963 33456889999999999999999999998875321
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (837)
...+.+...|.++++.++..|+.+|..+... ....++..| .+.++.++..|+.+|..
T Consensus 684 ---------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L---~D~d~~VR~~Av~aL~~ 740 (897)
T PRK13800 684 ---------PPAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAAL---GDPDHRVRIEAVRALVS 740 (897)
T ss_pred ---------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHh---cCCCHHHHHHHHHHHhc
Confidence 1245788888999999999999999887532 234567777 46889999999999887
Q ss_pred hhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHH
Q 003227 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQE 619 (837)
Q Consensus 540 l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~ 619 (837)
+. ..+.|..++.+.+ +.|+..++.+|..+... ....++.|..+++++++.+|..
T Consensus 741 ~~-------------~~~~l~~~l~D~~-~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 741 VD-------------DVESVAGAATDEN-REVRIAVAKGLATLGAG------------GAPAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred cc-------------CcHHHHHHhcCCC-HHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCCCHHHHHH
Confidence 52 2345677787775 99999999999998752 1234788999999999999999
Q ss_pred HHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCH
Q 003227 620 AAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAE 699 (837)
Q Consensus 620 a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~ 699 (837)
|+.+|..+...+ ..++.++..+.+ +++.+|..|+.+|..+.. ...++.|+.+|.+++.
T Consensus 795 A~~aLg~~g~~~---------~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 795 ALAALAELGCPP---------DDVAAATAALRA---SAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHHHHhcCCcc---------hhHHHHHHHhcC---CChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCH
Confidence 999999885432 123567888887 889999999999988542 3367999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 003227 700 DVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAY 753 (837)
Q Consensus 700 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~ 753 (837)
.||..|+.+|..+..++ ...+.|...+.+.+ +.||..|..+|..
T Consensus 853 ~VR~~A~~aL~~~~~~~---------~a~~~L~~al~D~d-~~Vr~~A~~aL~~ 896 (897)
T PRK13800 853 DVRKAAVLALTRWPGDP---------AARDALTTALTDSD-ADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHhccCCCH---------HHHHHHHHHHhCCC-HHHHHHHHHHHhh
Confidence 99999999999973222 24667888888765 8899999999864
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.58 E-value=2.1e-12 Score=142.63 Aligned_cols=354 Identities=15% Similarity=0.092 Sum_probs=267.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChH-
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK- 460 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~- 460 (837)
+.+...+.+.+.+....++.+|..+...... .....+..+.|...|.++++.+|..+++.|.++..+++
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~----------~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~ 110 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSP----------DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG 110 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 3467777777777767777888876643221 12256778899999999999999999999999988554
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 003227 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l 540 (837)
..+.+.+.+.++.++..+.+++..+...|+.+|.+++..+...+.+.+.+.++.|..++.+ .++.++..+..++.++
T Consensus 111 ~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~---~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ---SSDIVRCRVYELLVEI 187 (503)
T ss_pred HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc---cCHHHHHHHHHHHHHH
Confidence 4666777888999999999999999999999999999988888888888889999999953 5778999999999999
Q ss_pred hc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC--CH---
Q 003227 541 AA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP--HE--- 614 (837)
Q Consensus 541 ~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~--- 614 (837)
+. +++....+.+.|.++.++..+.+ +|.-++..|+..|..++. .+.....+.+.|+++.|..++.+. ++
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~ 262 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLS 262 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhccccCCccc
Confidence 87 56677788888999999999998 568999999999999998 566778888999999999998764 22
Q ss_pred HHHH-HHHHHHHhhcCChhhHHHHHH-cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhh-hcc-CChHH-
Q 003227 615 GVRQ-EAAGALWNLSFDDRNREAIAA-AGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAI-GRE-GGVAP- 689 (837)
Q Consensus 615 ~~~~-~a~~~L~~Ls~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l-~~~-~~i~~- 689 (837)
.+.. ......++++...+.. .+.. ...+..+..++.+ .++..+..|..+++.++.+.+++..+ ... +.++.
T Consensus 263 ~~~l~g~~~f~g~la~~~~~~-v~~~~p~~~~~l~~~~~s---~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~ 338 (503)
T PF10508_consen 263 SLLLPGRMKFFGNLARVSPQE-VLELYPAFLERLFSMLES---QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHV 338 (503)
T ss_pred chhhhhHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHH
Confidence 1122 2335566777652221 1111 2234455555555 89999999999999999999998888 443 34444
Q ss_pred ---HHHHhccCCHHHHHHHHHHHHHHcCCccc--H-------HHHH---HcCCHH-HHHHHHhcCCcHHHHHHHHHHHHH
Q 003227 690 ---LIALARSEAEDVHETAAGALWNLAFNPGN--A-------LRIV---EEGGVP-ALVHLCSSSGSKMARFMAALALAY 753 (837)
Q Consensus 690 ---L~~lL~s~~~~v~~~a~~~L~~l~~~~~~--~-------~~i~---~~~~i~-~L~~ll~~~~~~~~~~~a~~aL~~ 753 (837)
+-....++..+++..++.++.++...+.. . .... ..+... .++.+++.+- +++|..+...|..
T Consensus 339 l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF-~elr~a~~~~l~~ 417 (503)
T PF10508_consen 339 LKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPF-PELRCAAYRLLQA 417 (503)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 44445667889999999999999542221 1 1111 223344 6667776553 8899999999999
Q ss_pred hhCCC
Q 003227 754 MFDGR 758 (837)
Q Consensus 754 l~~~~ 758 (837)
++.-.
T Consensus 418 l~~~~ 422 (503)
T PF10508_consen 418 LAAQP 422 (503)
T ss_pred HhcCH
Confidence 87654
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.58 E-value=3.5e-13 Score=132.49 Aligned_cols=197 Identities=21% Similarity=0.192 Sum_probs=171.2
Q ss_pred hHHHhhhHHHHHHhhh-cCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHH
Q 003227 374 DFWLKQGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAI 452 (837)
Q Consensus 374 ~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 452 (837)
.+|..+..+.|+.+|+ +.||.++..|..++++.+. .+..+..+.+.|+++.+..+|.++++.++..|+.+|
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa--------f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL 78 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA--------FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNAL 78 (254)
T ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--------ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777899999996 5789999999999998654 345578899999999999999999999999999999
Q ss_pred HHhccChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHH
Q 003227 453 ANLSVNAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (837)
Q Consensus 453 ~~l~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~ 530 (837)
.+++.+.+++..+-. .++.+++...+ -+..++..++++|.+++..++.+..+.. .++.++.+|. +++..++
T Consensus 79 ~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~---~G~~~~k 151 (254)
T PF04826_consen 79 NNLSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLS---SGSEKTK 151 (254)
T ss_pred HhcCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHH---cCChHHH
Confidence 999999988888754 37777765544 3778999999999999988888877755 6999999995 5889999
Q ss_pred HHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 531 ~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
.+++.+|.||+.++.....+..++++..++.++....+.++...++....|+..+
T Consensus 152 ~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 152 VQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887788899999999999764
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.53 E-value=4.1e-12 Score=150.82 Aligned_cols=277 Identities=25% Similarity=0.165 Sum_probs=215.4
Q ss_pred HhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHH
Q 003227 426 KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (837)
Q Consensus 426 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 505 (837)
+...++.|+..|+++++.+|..|+.+|..+.. .+.++.|.+.|+++++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 44567899999999999999999999988753 236889999999999999999999998885321
Q ss_pred HHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 506 l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
...+.|...|. +.++.++..|+.+|..+.. +....++..+.+.+ +.++..|+.+|..+..
T Consensus 684 ----~~~~~L~~~L~---~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d-~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 684 ----PPAPALRDHLG---SPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPD-HRVRIEAVRALVSVDD- 743 (897)
T ss_pred ----CchHHHHHHhc---CCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCC-HHHHHHHHHHHhcccC-
Confidence 12356777774 4888999999999988642 22345777888775 8999999999887532
Q ss_pred CCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
.+.|..++.++++.+|..++.+|..+.... ...++.|..++.+ +++.+|..|+
T Consensus 744 ----------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D---~d~~VR~aA~ 796 (897)
T PRK13800 744 ----------------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGD---PDPLVRAAAL 796 (897)
T ss_pred ----------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcC---CCHHHHHHHH
Confidence 245778899999999999999999886532 1237788889887 8899999999
Q ss_pred HHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHH
Q 003227 666 GALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARF 745 (837)
Q Consensus 666 ~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~ 745 (837)
.+|..+...+. .++.++..|.++++.||..|+.+|..+.. ..+++.|+.++.+++ +.||.
T Consensus 797 ~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~-~~VR~ 856 (897)
T PRK13800 797 AALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPH-LDVRK 856 (897)
T ss_pred HHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCC-HHHHH
Confidence 99998644321 23668889999999999999999998762 345789999999875 88999
Q ss_pred HHHHHHHHhhCCCCcchhhhccCccCcccccchhHHHHHHHHHHHHHHHhcCChhHHHHHHhccc
Q 003227 746 MAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSA 810 (837)
Q Consensus 746 ~a~~aL~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~a 810 (837)
.|+.+|+.+. +.+ .+...|.+. +.+.|++||..+..+..
T Consensus 857 ~A~~aL~~~~-~~~------------------------~a~~~L~~a-l~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 857 AAVLALTRWP-GDP------------------------AARDALTTA-LTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHhccC-CCH------------------------HHHHHHHHH-HhCCCHHHHHHHHHHHh
Confidence 9999999972 211 234444444 77889999988766543
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.49 E-value=1.8e-11 Score=137.95 Aligned_cols=566 Identities=17% Similarity=0.152 Sum_probs=291.6
Q ss_pred CCcceeeecCcccchHHHHH-cCCCccEEecCCCCCCCHHHHHH-------HHh------cCCCCCeEEeCCCCCCCCCH
Q 003227 103 MNLQKLRFRGAESADSIIHL-QARNLRELSGDYCRKITDATLSV-------IVA------RHEALESLQLGPDFCERITS 168 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~~~~~~l~~-------~~~------~~~~L~~L~l~~~~~~~~~~ 168 (837)
-+++++++.+.......+.. ....|++|.+.+...+....... +.+ .-.+|++|+++| -..+..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G--~~~~s~ 137 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG--SELFSN 137 (699)
T ss_pred heeEEeeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc--cchhhc
Confidence 35788888877666555444 44559999988765332221111 111 235899999974 545555
Q ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh-HHhhCCCCCCEeeccCCCCCCHHHHHH
Q 003227 169 DAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQ 247 (837)
Q Consensus 169 ~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~L~~L~ls~~~~i~~~~l~~ 247 (837)
.-...++..+|+|++|.+++- .+...-+..+..++|+|..||++++ ++++ .|++.+++|+.|.+.+-..-+...+..
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred cHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCchhhHHH
Confidence 556678888999999999998 4444447778888899999999998 5555 899999999999997654445466666
Q ss_pred HHhcCCCccEEEeccC-CCCH-HHHHHHHh---cCcccccccccccccccchhHHHHHHhhhhhhh-hhhhchHHHHHHh
Q 003227 248 VWHKLPKLVGLDVSRT-DVGP-ITISRLLT---SSKSLKVLCALNCPVLEEENNISAVKSKGKLLL-ALFTDIFKALASL 321 (837)
Q Consensus 248 ~~~~~~~L~~L~l~~~-~i~~-~~l~~l~~---~~~~L~~l~l~~c~~i~~~~~~~~~~~~~~l~l-~~~~~~~~~l~~l 321 (837)
++. +++|+.||+|.. +..+ .-+...++ .+|+|+.||.++.+ +++.-+..+..+.++|.- +... ..
T Consensus 216 LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~~i~~~~-------~~ 286 (699)
T KOG3665|consen 216 LFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNLQQIAALD-------CL 286 (699)
T ss_pred Hhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccHhhhhhhh-------hh
Confidence 665 899999999995 2222 23333333 57999999999877 777777777655555521 1111 00
Q ss_pred hhhcccccccccccccccCCCCcchHHHHHHHHHHHHHHHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHH
Q 003227 322 FAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAAT 401 (837)
Q Consensus 322 ~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~l~~l~s~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 401 (837)
. ......-+...+... .....+..+.++... .++.. ....+..+..++...+..-+.
T Consensus 287 ~-----~~~~~~~~i~~ln~a--t~~s~i~~L~~~~~l-------~r~~~-----v~~cl~~l~~~~~~~~~~~~~---- 343 (699)
T KOG3665|consen 287 A-----LSAVSSTEIRVLNTA--TLDSSIQALTYYLNL-------KRPSE-----VSRCLNELLDLLKSLDSTREY---- 343 (699)
T ss_pred c-----cccccccCceeeeec--chhHHHHHHHHHHHh-------cChHH-----HHHHHHHHHHHHHHhhhhhhh----
Confidence 0 000000000111110 111222222222221 22211 111233444444321111111
Q ss_pred HhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHH-HHcCCHHHHHHHHhc
Q 003227 402 GLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAV-AEEGGINILAVLARS 480 (837)
Q Consensus 402 ~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i-~~~g~i~~L~~lL~~ 480 (837)
.-..++..++..++......+..+..+|..++.....+-.. ...-.+..++.....
T Consensus 344 -----------------------~~~~~l~~i~~sm~~~~s~~~i~~~~CL~~i~~~~~~~l~~~~~~~~l~~LLn~v~~ 400 (699)
T KOG3665|consen 344 -----------------------DISECLKLIINSMNTFSSSNQIQGSACLIHIVKHTKQRLSPLLVSLLLKVLLNLVEK 400 (699)
T ss_pred -----------------------hHHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHhhhhccChHHHHHHHHHHHHhhhc
Confidence 11112223333333322233333344444444322111000 000011222211111
Q ss_pred --------------------------------CCHH----HHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHh--h
Q 003227 481 --------------------------------MNRL----VAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK--W 522 (837)
Q Consensus 481 --------------------------------~~~~----~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~--~ 522 (837)
.++. ++..+...+.+.......-..-...|-.+....++.. +
T Consensus 401 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (699)
T KOG3665|consen 401 LDTLDSNDELTLCNSIILLLSLLVSRRKLLSVLDHHEQDNIQQRLTVCLSISTACQVVSITKVNVGELGIVLTLLLRIKL 480 (699)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHhhcchhHHHHHHHHHhccchhHHHHHHHHHHHh
Confidence 0111 1111111111111100000000011111111111100 1
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccch
Q 003227 523 SSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGA 601 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 601 (837)
.....-.......+|++... +++.+..+.+.|++..+...++.-+..+.+..+.+.+.+++...+ ..........
T Consensus 481 ~~~~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~----~~~~~~~~~~ 556 (699)
T KOG3665|consen 481 RKIYWCDDVLEFTALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE----LRELLMIFEF 556 (699)
T ss_pred hccchhhHHHHHHHHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh----hhhhhhHHHH
Confidence 11222222222238888887 578899999999999999999977778899999999999998532 2222221112
Q ss_pred HH--HHHHHcCCCCH-HHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccch
Q 003227 602 LE--ALVQLTRSPHE-GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANC 678 (837)
Q Consensus 602 i~--~L~~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~ 678 (837)
+. .+-.++...+. +.-+.|+++|+.+..+.+. -.+.+ ..+.+.+.-..+...+... .
T Consensus 557 ~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~~~~---~~~~~--------------~r~~~~~~l~e~i~~~~~~---~ 616 (699)
T KOG3665|consen 557 IDFSVFKVLLNKWDSIERSYNAASILALLLSDSEK---TTECV--------------FRNSVNELLVEAISRWLTS---E 616 (699)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHhCCCc---Ccccc--------------chHHHHHHHHHHhhccCcc---c
Confidence 22 23334555544 7888888888887665332 00000 1111222222222222211 1
Q ss_pred hhhhccCChHH-HHHHhc-cCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHH
Q 003227 679 IAIGREGGVAP-LIALAR-SEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALAL 751 (837)
Q Consensus 679 ~~l~~~~~i~~-L~~lL~-s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL 751 (837)
........+.+ +..++. +..+..+..|++++.++.. ++++...+.+.++++.+.+.-.......++..+...+
T Consensus 617 ~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 617 IRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred eeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 11222223333 555553 5668899999999999987 6667777888888888887665433344555444433
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.40 E-value=8.3e-11 Score=124.03 Aligned_cols=385 Identities=12% Similarity=0.061 Sum_probs=253.5
Q ss_pred HhhhcCcCchhhHHHhhhHHHHHHhhhcC--CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC
Q 003227 363 RTAESNPQGLDDFWLKQGAGLLLSLMQST--QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW 440 (837)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 440 (837)
+..-.+++....+++.|+++.+..++... .++.+...+.++..++..+... ...+.+.+.++.|+++|.+.
T Consensus 35 N~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~-------v~svL~~~~ll~Ll~LLs~s 107 (678)
T KOG1293|consen 35 NLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDK-------VDSVLRIIELLKLLQLLSES 107 (678)
T ss_pred chhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccch-------HHHHHHHhhHHHHHHHhcCc
Confidence 33445555666678888999999998544 4566666677777776655544 66889999999999999998
Q ss_pred C-hhHHHHHHHHHHHhccChHHHHH-HHHcC--CHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHH
Q 003227 441 R-EGLQSEAAKAIANLSVNAKVAKA-VAEEG--GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALV 516 (837)
Q Consensus 441 ~-~~~~~~a~~~L~~l~~~~~~~~~-i~~~g--~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~ 516 (837)
| ..+....++++..+.......+. ....+ .+..+..++..+.......-+....+++..++.+..+.+.|..+.+.
T Consensus 108 D~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~ 187 (678)
T KOG1293|consen 108 DSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKIN 187 (678)
T ss_pred chHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHH
Confidence 8 88999999999998873322222 21111 23333333333566666677777778888788888888888887777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHH---HhhcCCCch-----HHHHhcCcHH--HHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 003227 517 DLIFKWSSGGDGVLERAAGALA---NLAADDKCS-----MEVALAGGVH--ALVMLARSCKFEGVQEQAARALANLAAHG 586 (837)
Q Consensus 517 ~lL~~~~~~~~~~~~~a~~~L~---~l~~~~~~~-----~~l~~~g~i~--~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (837)
-++. ..+..++..|+.+++ ++..+++.. ..+.+.|..+ .+.+++++++ ...+..++.++..+...+
T Consensus 188 ~l~~---~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~-~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 188 ILLM---YLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPD-FSERLRSLECLVPYLRKS 263 (678)
T ss_pred HHHH---hhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCC-ccHHHHHHHHHHHHHhcc
Confidence 6664 346678888888888 666654322 2233445544 3334455443 344455555555554432
Q ss_pred CCCC---------cc---------------------------------------cchhhccchHHHHHHH----------
Q 003227 587 DSNS---------NN---------------------------------------SAVGQEAGALEALVQL---------- 608 (837)
Q Consensus 587 ~~~~---------~~---------------------------------------~~~~~~~~~i~~L~~l---------- 608 (837)
.... ++ +....++..++.+.++
T Consensus 264 ~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~ 343 (678)
T KOG1293|consen 264 FNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAAS 343 (678)
T ss_pred ccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhc
Confidence 0000 00 0000000111111111
Q ss_pred ------------------------------------------cCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHH
Q 003227 609 ------------------------------------------TRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEA 645 (837)
Q Consensus 609 ------------------------------------------L~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~ 645 (837)
....+.+.+.+|+..+.+++.. ..-+..+-...++++
T Consensus 344 ~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~p 423 (678)
T KOG1293|consen 344 DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQP 423 (678)
T ss_pred chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHH
Confidence 1113455566666666665554 222333445678999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHH--HH
Q 003227 646 LVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNAL--RI 722 (837)
Q Consensus 646 L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~--~i 722 (837)
|++++.. ++..+...++++++|+... ...+..+...||++.+..++.+.++.++..+.|+|+++....+... ..
T Consensus 424 lvqll~d---p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~ 500 (678)
T KOG1293|consen 424 LVQLLMD---PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL 500 (678)
T ss_pred HHHHhhC---cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHH
Confidence 9999976 9999999999999999965 7788899999999999999999999999999999999987544332 23
Q ss_pred HHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcch
Q 003227 723 VEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEF 762 (837)
Q Consensus 723 ~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~ 762 (837)
...-....++.++++++ ..||+.+...|+|+..+..+.+
T Consensus 501 ~~ki~a~~i~~l~nd~d-~~Vqeq~fqllRNl~c~~~~sv 539 (678)
T KOG1293|consen 501 LAKIPANLILDLINDPD-WAVQEQCFQLLRNLTCNSRKSV 539 (678)
T ss_pred HHHhhHHHHHHHHhCCC-HHHHHHHHHHHHHhhcCcHHHH
Confidence 33334556667777765 8899999999999988866433
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=2.5e-11 Score=128.71 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=29.7
Q ss_pred CCCCEeeccCCCCCCHHHHHHH---HhcCCCccEEEeccCCCCHHHHHHHHhcC----cccccccccccccccchh
Q 003227 227 LSVRFLSVAGTSNMKWGVVSQV---WHKLPKLVGLDVSRTDVGPITISRLLTSS----KSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 227 ~~L~~L~ls~~~~i~~~~l~~~---~~~~~~L~~L~l~~~~i~~~~l~~l~~~~----~~L~~l~l~~c~~i~~~~ 295 (837)
++|++|++++| .+++.+...+ ...+++|++|++++|.+++.++..+...+ ++|+.|++.+|. +++.+
T Consensus 193 ~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~ 266 (319)
T cd00116 193 CNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDG 266 (319)
T ss_pred CCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHH
Confidence 35555555544 2333332222 23344455555555555544444443332 445555555543 44444
No 36
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.36 E-value=2.9e-12 Score=144.71 Aligned_cols=167 Identities=28% Similarity=0.453 Sum_probs=79.9
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh
Q 003227 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 202 (837)
.|++|++|++++|..++|.++..+...|++|++|.+. .|..+++.++..++..||+|++|++++|..+++.++..++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~--~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLS--NCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccC--CCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 4455555555555555555555555555555555542 34445555555555555555555555555555555555555
Q ss_pred hCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCC-HHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcc--
Q 003227 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMK-WGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS-- 279 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~-~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~-- 279 (837)
+||+|+.|.+..+.. |+.++.+.+.++...+ |........+|++|+.+.+.++..++.+...+..+|++
T Consensus 319 ~c~~l~~l~~~~~~~--------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNG--------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT 390 (482)
T ss_pred hCcchhhhhhhhcCC--------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc
Confidence 555554444333211 1122222222222222 23333333455555555555544444443333344443
Q ss_pred ------------cccccccccccccchhHHHH
Q 003227 280 ------------LKVLCALNCPVLEEENNISA 299 (837)
Q Consensus 280 ------------L~~l~l~~c~~i~~~~~~~~ 299 (837)
++.|++..|..+|+..+...
T Consensus 391 ~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 391 ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred hHHHHHhccCCccceEecccCccccccchHHH
Confidence 36666677766666665444
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=4e-11 Score=127.15 Aligned_cols=211 Identities=21% Similarity=0.181 Sum_probs=149.3
Q ss_pred cccCCCCCcCC--HHHHH---HHHHhCCCcceeeecCcccchHH---HHH--cCCCccEEecCCCCCCCHHHHHHHH---
Q 003227 81 SSLDLRAHKCD--IAMAA---SLASRCMNLQKLRFRGAESADSI---IHL--QARNLRELSGDYCRKITDATLSVIV--- 147 (837)
Q Consensus 81 ~~l~l~~~~~~--~~~l~---~l~~~~~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~c~~~~~~~l~~~~--- 147 (837)
++++++..... ...+. .....+++|+.|++++|...... +.. ..++|++|++++|. +++.++..+.
T Consensus 54 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l 132 (319)
T cd00116 54 KELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGL 132 (319)
T ss_pred eEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHH
Confidence 45666554443 22222 23334679999999999775321 111 11669999999987 7765555443
Q ss_pred hcC-CCCCeEEeCCCCCCCCCHHHHHH---HHhcCCCCCEEEecCCCCCCHHHHHHHHhhC---CCccEEEecCCCCCCh
Q 003227 148 ARH-EALESLQLGPDFCERITSDAVKA---IALCCPKLKKLRLSGIRDICGDAINALAKLC---PNLTDIGFLDCLNVDE 220 (837)
Q Consensus 148 ~~~-~~L~~L~l~~~~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~---~~L~~L~l~~~~~~~~ 220 (837)
..+ ++|++|+++ +| .++..+... ....+++|++|++++| .+++.++..+...+ ++|++|++++| .+++
T Consensus 133 ~~~~~~L~~L~L~--~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~ 207 (319)
T cd00116 133 KDLPPALEKLVLG--RN-RLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTD 207 (319)
T ss_pred HhCCCCceEEEcC--CC-cCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccCh
Confidence 345 899999996 35 555444333 3455789999999998 78888776665433 59999999999 5665
Q ss_pred HH-------hhCCCCCCEeeccCCCCCCHHHHHHHHhcC----CCccEEEeccCCCCHHHHHHHHh---cCccccccccc
Q 003227 221 VA-------LGNVLSVRFLSVAGTSNMKWGVVSQVWHKL----PKLVGLDVSRTDVGPITISRLLT---SSKSLKVLCAL 286 (837)
Q Consensus 221 ~~-------l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~----~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~l~l~ 286 (837)
.+ +..+++|++|++++| .+++.++..+...+ +.|++|++++|.+++.+...+.. .+++|+.++++
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 33 356789999999997 58887777776554 79999999999998766655544 45789999999
Q ss_pred ccccccchhHHHH
Q 003227 287 NCPVLEEENNISA 299 (837)
Q Consensus 287 ~c~~i~~~~~~~~ 299 (837)
+|. +++++...+
T Consensus 287 ~N~-l~~~~~~~~ 298 (319)
T cd00116 287 GNK-FGEEGAQLL 298 (319)
T ss_pred CCC-CcHHHHHHH
Confidence 988 888873333
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.9e-13 Score=125.14 Aligned_cols=169 Identities=23% Similarity=0.284 Sum_probs=135.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhC
Q 003227 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (837)
Q Consensus 125 ~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 204 (837)
..|++|+|++-. ++...+..+.+.|.+|+.|.|. ...+.|.-...++++ .+|+.|+|+.|..+|..++..+.+.|
T Consensus 185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlE---g~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLE---GLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhcccc---ccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhh
Confidence 469999999844 8888999999999999999995 346777666678774 78999999999999999999999999
Q ss_pred CCccEEEecCCCCCChH---HhhC-CCCCCEeeccCCC-CCCHHHHHHHHhcCCCccEEEeccC-CCCHHHHHHHHhcCc
Q 003227 205 PNLTDIGFLDCLNVDEV---ALGN-VLSVRFLSVAGTS-NMKWGVVSQVWHKLPKLVGLDVSRT-DVGPITISRLLTSSK 278 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~~---~l~~-l~~L~~L~ls~~~-~i~~~~l~~~~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~ 278 (837)
..|.+|+++.|...++. .+.. -++|..|+++||. ++.+..+..+...||+|.+|||+.| .+++..+..+ ...+
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~ 338 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFN 338 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-Hhcc
Confidence 99999999999666664 1222 3689999999984 4567788888899999999999997 5677555444 4589
Q ss_pred ccccccccccccccchhHHHH
Q 003227 279 SLKVLCALNCPVLEEENNISA 299 (837)
Q Consensus 279 ~L~~l~l~~c~~i~~~~~~~~ 299 (837)
.|++|.++.|..|..+.+..+
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l 359 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLEL 359 (419)
T ss_pred hheeeehhhhcCCChHHeeee
Confidence 999999999988877764444
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.34 E-value=4.7e-10 Score=117.56 Aligned_cols=322 Identities=15% Similarity=0.091 Sum_probs=230.8
Q ss_pred HHHHHHhhh-cCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHh-----CcHHHHHHHHhcCChhHHHHHHHHHHH
Q 003227 381 AGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD-----GGIRLLLDLAKSWREGLQSEAAKAIAN 454 (837)
Q Consensus 381 i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (837)
+..+++++. .+.+++.......+..|...+ +.....+.+. ....+.+.+|..+|.-++..|+.+|..
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-------~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-------DTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence 578888884 456677777776666666543 3334455543 467788889998999999999999999
Q ss_pred hcc-ChHHHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHH
Q 003227 455 LSV-NAKVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (837)
Q Consensus 455 l~~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~ 532 (837)
+.. .+.........--.+.+...++.+ +...+..|+.+|..|...++.|..+.+.++++.|+.+|+. ...+.+++.+
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~-~~~~~Ql~Y~ 206 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSN-ATLGFQLQYQ 206 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhh-ccccHHHHHH
Confidence 875 222111100000123444555543 4667788889999999999999999999999999999975 3446789999
Q ss_pred HHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCC---cccchhhccchHHHHHHHc
Q 003227 533 AAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS---NNSAVGQEAGALEALVQLT 609 (837)
Q Consensus 533 a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~~~i~~L~~lL 609 (837)
++.++|-|+.+++....+...+.|+.++.+++...-+.+.+-++.++.|+...+.... .....+.+.|.++ ++..|
T Consensus 207 ~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L 285 (429)
T cd00256 207 SIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSL 285 (429)
T ss_pred HHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHH
Confidence 9999999999988777777789999999999988778999999999999987532111 2233445556555 44444
Q ss_pred CC---CCHHHHHHHHH-------HHHhhcCCh------------------------hhHHHHHHc--CCHHHHHHHHhhc
Q 003227 610 RS---PHEGVRQEAAG-------ALWNLSFDD------------------------RNREAIAAA--GGVEALVVLAQSC 653 (837)
Q Consensus 610 ~~---~~~~~~~~a~~-------~L~~Ls~~~------------------------~~~~~l~~~--g~i~~L~~ll~~~ 653 (837)
.. .|+++.+..-. -+..++..+ +|...+.+. ..+..|+.+|..
T Consensus 286 ~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~- 364 (429)
T cd00256 286 EQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET- 364 (429)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 43 36666554221 122233211 233344443 347888999864
Q ss_pred CCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 654 SNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 654 ~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
+.++.+..-|+.=++.++.. |.+|..+.+.|+=..+++++.+++++|+..|+.++..|.
T Consensus 365 -s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 365 -SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred -CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46777778888888888875 888888888999999999999999999999999998874
No 40
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.24 E-value=1.8e-11 Score=138.20 Aligned_cols=197 Identities=28% Similarity=0.404 Sum_probs=147.1
Q ss_pred HHhCCCcceeeecCccc--chHH---HHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHH--H
Q 003227 99 ASRCMNLQKLRFRGAES--ADSI---IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDA--V 171 (837)
Q Consensus 99 ~~~~~~L~~L~l~~~~~--~~~~---~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~--l 171 (837)
...+..++.+++..+.. .... +...+++|+.|.+..|..+++.++..+...+++|+.|++++ .|..++..+ .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~ 235 (482)
T KOG1947|consen 157 SRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG-CCLLITLSPLLL 235 (482)
T ss_pred HHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccC-cccccccchhHh
Confidence 33345566666665432 2222 22258999999999999899888888999999999999963 134443333 4
Q ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHh----hCCCCCCEeeccCCCCCCHHHHHH
Q 003227 172 KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQ 247 (837)
Q Consensus 172 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l----~~l~~L~~L~ls~~~~i~~~~l~~ 247 (837)
..+...|++|++|++++|..++|.++..++..||+|++|.+.+|..+++.++ ..|++|++|++++|..++|.++..
T Consensus 236 ~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~ 315 (482)
T KOG1947|consen 236 LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA 315 (482)
T ss_pred hhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH
Confidence 4577888999999999997799999999999999999999988977899876 478899999999999999999998
Q ss_pred HHhcCCCccEEEeccC----CCCHHHHHHHHhcCc-ccccccccccccccchhH
Q 003227 248 VWHKLPKLVGLDVSRT----DVGPITISRLLTSSK-SLKVLCALNCPVLEEENN 296 (837)
Q Consensus 248 ~~~~~~~L~~L~l~~~----~i~~~~l~~l~~~~~-~L~~l~l~~c~~i~~~~~ 296 (837)
+..+|++|+.|.+... .+++.++..+..... .+..+.+.+|+.+++..+
T Consensus 316 ~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l 369 (482)
T KOG1947|consen 316 LLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSL 369 (482)
T ss_pred HHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhh
Confidence 8888999888776663 255555555444332 566666666666666553
No 41
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.22 E-value=6.4e-09 Score=110.08 Aligned_cols=362 Identities=15% Similarity=0.080 Sum_probs=240.9
Q ss_pred HHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC--ChhHHHHHHHHHHHhcc-ChH
Q 003227 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSV-NAK 460 (837)
Q Consensus 384 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~-~~~ 460 (837)
++.-+-+.+|+....|..-..+++.+.+++ +..+++.|+++.|..++..+ ..+.+...+.++..+.. +.+
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~-------K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd 86 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDN-------KETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQD 86 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcCCCc-------cchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccc
Confidence 334455677777788888888887776665 34689999999999999875 45566566666666665 667
Q ss_pred HHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHhhccCccchH---HHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003227 461 VAKAVAEEGGINILAVLARSMN-RLVAEEAAGGLWNLSVGEEHKG---AIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~---~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (837)
....+.+.+.++.|++++.+.+ ..+.+...+.+..+......+. .......++.+..++. -+...+...-+..
T Consensus 87 ~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s---~~lk~~~~l~~~~ 163 (678)
T KOG1293|consen 87 KVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS---IELKYISRLDVSR 163 (678)
T ss_pred hHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh---hhhhhhhhhhhhh
Confidence 7888999999999999999988 8899999999999987553332 2223333444444442 1334445555566
Q ss_pred HHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH---HHhcCCCCCCcccc----hhhccchHH--HHHH
Q 003227 537 LANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA---NLAAHGDSNSNNSA----VGQEAGALE--ALVQ 607 (837)
Q Consensus 537 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~----~~~~~~~i~--~L~~ 607 (837)
..+++..++.+.-+.++|+.+.+.-++...+ ...+.+|..+++ ++... ++.... ...+.|+.+ .+.+
T Consensus 164 ~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s-~~~RlaaL~~~sr~~~iL~N---n~~~sm~~l~~L~d~~v~~r~~v~r 239 (678)
T KOG1293|consen 164 AAHLSSTKDHQLILCNAGILEKINILLMYLS-SKLRLAALLCLSRGDRILRN---NPLGSMFLLGLLKDKGVNIRCVVTR 239 (678)
T ss_pred hccccccchhhheeccccchhhHHHHHHhhh-HHHHHHHHHHhhccceeeec---CchhHHHHHHHHhccccchhhhhhh
Confidence 6677777777777778888887777766544 677888888888 66554 222211 112334443 2334
Q ss_pred HcCCCCHHHHHHHHHHHHhhcCCh----------------------------------------------------hhHH
Q 003227 608 LTRSPHEGVRQEAAGALWNLSFDD----------------------------------------------------RNRE 635 (837)
Q Consensus 608 lL~~~~~~~~~~a~~~L~~Ls~~~----------------------------------------------------~~~~ 635 (837)
++++++...+..++.++.++.... ..+.
T Consensus 240 L~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~ 319 (678)
T KOG1293|consen 240 LLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQL 319 (678)
T ss_pred hhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhh
Confidence 455554444444444443321100 0000
Q ss_pred HHHHcCCHHHHHHHHhh-------------------------------------------------cCCCCHHHHHHHHH
Q 003227 636 AIAAAGGVEALVVLAQS-------------------------------------------------CSNASPGLQERAAG 666 (837)
Q Consensus 636 ~l~~~g~i~~L~~ll~~-------------------------------------------------~~~~~~~v~~~A~~ 666 (837)
...+....+...+++.. ....+...+.+|+.
T Consensus 320 ~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l 399 (678)
T KOG1293|consen 320 PQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALL 399 (678)
T ss_pred HHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 00011112222222111 01255666666777
Q ss_pred HHHhcccC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHH
Q 003227 667 ALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMAR 744 (837)
Q Consensus 667 ~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~ 744 (837)
.+.+++.+ ...+..+....++++|++++.+++..|+..+.++|.|+.. ....+..+++.|++..+..++.+.+ +.++
T Consensus 400 ~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~-~n~r 478 (678)
T KOG1293|consen 400 CLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPD-FNSR 478 (678)
T ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCC-chHH
Confidence 77776644 3445556677899999999999999999999999999976 7788999999999999999999876 8899
Q ss_pred HHHHHHHHHhhCCCCc
Q 003227 745 FMAALALAYMFDGRMD 760 (837)
Q Consensus 745 ~~a~~aL~~l~~~~~~ 760 (837)
..+.++|+++.-+..+
T Consensus 479 ~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 479 ANSLWVLRHLMFNCDE 494 (678)
T ss_pred HHHHHHHHHHHhcchH
Confidence 9999999999877653
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=1.2e-10 Score=114.10 Aligned_cols=189 Identities=21% Similarity=0.221 Sum_probs=135.1
Q ss_pred HhCCCcceeeecCcccchHH------HHHcCCCccEEecCCCCCCCHHHHHHHH------------hcCCCCCeEEeCCC
Q 003227 100 SRCMNLQKLRFRGAESADSI------IHLQARNLRELSGDYCRKITDATLSVIV------------ARHEALESLQLGPD 161 (837)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~c~~~~~~~l~~~~------------~~~~~L~~L~l~~~ 161 (837)
.-||+|+.|+|+.+.+.... ...+|..|++|.|.+|. +...+-..+. .+-+.|+.+..+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~-- 165 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICG-- 165 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEee--
Confidence 35789999999988665322 12279999999999997 5443333322 234688888885
Q ss_pred CCCCCCHHHHHH---HHhcCCCCCEEEecCCCCCCHHHHHHH---HhhCCCccEEEecCCCCCChH------HhhCCCCC
Q 003227 162 FCERITSDAVKA---IALCCPKLKKLRLSGIRDICGDAINAL---AKLCPNLTDIGFLDCLNVDEV------ALGNVLSV 229 (837)
Q Consensus 162 ~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~------~l~~l~~L 229 (837)
.+++.+.+... ..+.+|.|+.+.+... .|..+++..+ ..+||+|+.|||.+|+.-... .++.+++|
T Consensus 166 -rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 166 -RNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred -ccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 55666655444 4467789999999887 6776666333 478999999999999433332 24678999
Q ss_pred CEeeccCCCCCCHHHHHHHH----hcCCCccEEEeccCCCCHHHHHHHHh---cCcccccccccccccc--cchh
Q 003227 230 RFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVGPITISRLLT---SSKSLKVLCALNCPVL--EEEN 295 (837)
Q Consensus 230 ~~L~ls~~~~i~~~~l~~~~----~~~~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~l~l~~c~~i--~~~~ 295 (837)
+.|++++| .+.+.|...+. ...|+|+.|.+.+|+++-++...+.. ..+.|+.|+|++|. + .|++
T Consensus 244 ~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~ 316 (382)
T KOG1909|consen 244 RELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEG 316 (382)
T ss_pred eeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchh
Confidence 99999998 56665554444 56889999999999998776655533 35899999999998 6 4444
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.18 E-value=6.7e-10 Score=98.47 Aligned_cols=117 Identities=39% Similarity=0.529 Sum_probs=107.3
Q ss_pred HHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC-hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-
Q 003227 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE- 500 (837)
Q Consensus 423 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~- 500 (837)
.+.+.|+++.++++|++++..++..++.+|.+++.+ ++.+..+.+.|+++.+++++.++++.++..++++|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 367899999999999999999999999999999995 889999999999999999999999999999999999999876
Q ss_pred cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 003227 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (837)
Q Consensus 501 ~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~ 542 (837)
.....+.+.|+++.+++++. +.+.++++.++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~---~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLD---SSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHh---cCCHHHHHHHHHHHHHhhC
Confidence 56777888999999999995 4688999999999999873
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.15 E-value=3.2e-08 Score=103.96 Aligned_cols=320 Identities=15% Similarity=0.094 Sum_probs=225.8
Q ss_pred CcHHHHHHHHhc-CChhHHHHHHHHHHHhcc-ChHHHHHHHHc-----CCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc
Q 003227 428 GGIRLLLDLAKS-WREGLQSEAAKAIANLSV-NAKVAKAVAEE-----GGINILAVLARSMNRLVAEEAAGGLWNLSVGE 500 (837)
Q Consensus 428 g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-----g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 500 (837)
..+..++.+|.. .++++.+..+..+..+.. ++...+.+.+. ....+++.+|..++.-+...|+.+|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 345677888876 578888888888888887 45545556554 34778888998889999999999999997532
Q ss_pred -cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHH
Q 003227 501 -EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK-FEGVQEQAARA 578 (837)
Q Consensus 501 -~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~-~~~~~~~a~~~ 578 (837)
.........-.++.+...++. ..+...+..++.+|..|...++.|..+.+.++++.|+.+++... +...+..++-+
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~--~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNN--ITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhc--cCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 211111111122334445542 23466788889999999999999999999999999999998754 46889999999
Q ss_pred HHHHhcCCCCCCcccchhhccchHHHHHHHcCCC-CHHHHHHHHHHHHhhcCCh-------hhHHHHHHcCCHHHHHHHH
Q 003227 579 LANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP-HEGVRQEAAGALWNLSFDD-------RNREAIAAAGGVEALVVLA 650 (837)
Q Consensus 579 L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~-------~~~~~l~~~g~i~~L~~ll 650 (837)
++-++.. ++........+.++.++++++.. .+.+.+-++.+|.|+...+ .....+++.|..+.+-.+.
T Consensus 211 lWlLSF~----~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 211 IWLLTFN----PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred HHHHhcc----HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 9999995 33445556789999999999764 6778899999999998742 2345667766655444444
Q ss_pred hhcCCCCHHHHHHHHHHH-------Hhcc---------------cCcc---------chhhhhcc--CChHHHHHHhc-c
Q 003227 651 QSCSNASPGLQERAAGAL-------WGLS---------------VSEA---------NCIAIGRE--GGVAPLIALAR-S 696 (837)
Q Consensus 651 ~~~~~~~~~v~~~A~~~L-------~~l~---------------~~~~---------~~~~l~~~--~~i~~L~~lL~-s 696 (837)
.. .-.|+++.+.-...- ..++ -+|. +...+.+. ..+..|+++|. +
T Consensus 287 ~r-k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s 365 (429)
T cd00256 287 QR-KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETS 365 (429)
T ss_pred cC-CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 33 446666655322221 1111 1222 22233322 23567888884 6
Q ss_pred CCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 003227 697 EAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (837)
Q Consensus 697 ~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~ 755 (837)
.++.+..-|+.=++.++. +|..+..+-+.|+=..+++++.+++ +.||..|..|+..+.
T Consensus 366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d-~~Vr~eAL~avQklm 424 (429)
T cd00256 366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED-PNVRYEALLAVQKLM 424 (429)
T ss_pred CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 678888888888888877 6777777778898888889999875 889999999998774
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.15 E-value=5.5e-10 Score=99.07 Aligned_cols=116 Identities=41% Similarity=0.474 Sum_probs=106.3
Q ss_pred hhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC
Q 003227 596 GQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 596 ~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
+.+.|+++.+++++.++++.++..++.+|.+++.. ++....+.+.|+++.+++++.+ .++.++..|+++|++++.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS---EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC---CCHHHHHHHHHHHHHHccC
Confidence 45689999999999999999999999999999998 7788888999999999999987 8999999999999999987
Q ss_pred c-cchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 675 E-ANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 675 ~-~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
+ ..+..+.+.|+++.+++++++.+.++++.++++|.+++.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 4 566677889999999999999999999999999999873
No 46
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=4.3e-08 Score=110.76 Aligned_cols=354 Identities=18% Similarity=0.085 Sum_probs=220.0
Q ss_pred HHHHHHhh-hcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhccC
Q 003227 381 AGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSVN 458 (837)
Q Consensus 381 i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~ 458 (837)
.+.|..++ .+.++++|..|+--+++++..--..+ ..+.++.+.. .|+....+ ..+.++..-+.+++.++.+
T Consensus 38 l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l--~~e~~~siks-----~lL~~~~~E~~~~vr~k~~dviAeia~~ 110 (1075)
T KOG2171|consen 38 LPALAHILATSADPQVRQLAAVLLRKLLTKHWSRL--SAEVQQSIKS-----SLLEIIQSETEPSVRHKLADVIAEIARN 110 (1075)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcC--CHHHHHHHHH-----HHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 47788888 56789999999999998886533222 2344444433 66666665 5788899999999998874
Q ss_pred hHHHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHh-hCCCCHHHHHHHHHH
Q 003227 459 AKVAKAVAEE-GGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLERAAGA 536 (837)
Q Consensus 459 ~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~-~~~~~~~~~~~a~~~ 536 (837)
.--. +- +.++.|.+..+++++..|+.|..+|+.+...-.++. .+.++.+..++.+ ..+.+..++..++++
T Consensus 111 ~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~----~~~~~~l~~lf~q~~~d~s~~vr~~a~rA 182 (1075)
T KOG2171|consen 111 DLPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL----QPHLDDLLRLFSQTMTDPSSPVRVAAVRA 182 (1075)
T ss_pred cccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc----chhHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 3100 11 125666677788999999999999999986432221 1123333333322 133444599999999
Q ss_pred HHHhhcCC-CchHHHHhc-CcHHHHHHHHh----cCCCHHHHHHHHHHHHHHhcCCCCCCcc-cchhhccchHHHHHHHc
Q 003227 537 LANLAADD-KCSMEVALA-GGVHALVMLAR----SCKFEGVQEQAARALANLAAHGDSNSNN-SAVGQEAGALEALVQLT 609 (837)
Q Consensus 537 L~~l~~~~-~~~~~l~~~-g~i~~L~~ll~----~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~~i~~L~~lL 609 (837)
+..++... +++...... ..+|.++..+. .++ .+....+..++..+.... +.. +..+ ..++...+...
T Consensus 183 ~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d-~~~a~~~l~~l~El~e~~---pk~l~~~l--~~ii~~~l~Ia 256 (1075)
T KOG2171|consen 183 LGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD-DDAAKSALEALIELLESE---PKLLRPHL--SQIIQFSLEIA 256 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc-hHHHHHHHHHHHHHHhhc---hHHHHHHH--HHHHHHHHHHh
Confidence 99998743 333332222 34565655554 333 455566777777776531 211 1111 12333333333
Q ss_pred CCC--CHHHHHHHHHHHHhhcCChhh-H---------------------------------------------HHHHH--
Q 003227 610 RSP--HEGVRQEAAGALWNLSFDDRN-R---------------------------------------------EAIAA-- 639 (837)
Q Consensus 610 ~~~--~~~~~~~a~~~L~~Ls~~~~~-~---------------------------------------------~~l~~-- 639 (837)
+++ ++.+|..|+..|..++...+. + ...++
T Consensus 257 ~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrl 336 (1075)
T KOG2171|consen 257 KNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRL 336 (1075)
T ss_pred hcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHH
Confidence 433 566777777776665443110 0 00000
Q ss_pred ---cC---C----HHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhc--cCChHHHHHHhccCCHHHHHHHHH
Q 003227 640 ---AG---G----VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR--EGGVAPLIALARSEAEDVHETAAG 707 (837)
Q Consensus 640 ---~g---~----i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~--~~~i~~L~~lL~s~~~~v~~~a~~ 707 (837)
-| . ++.+-.++.+ .++.-|.+|+.+|+.++..... .+.. ...++..+..|.++++.||.+|+.
T Consensus 337 A~~L~g~~v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EGc~~--~m~~~l~~Il~~Vl~~l~DphprVr~AA~n 411 (1075)
T KOG2171|consen 337 ALHLGGKQVLPPLFEALEAMLQS---TEWKERHAALLALSVIAEGCSD--VMIGNLPKILPIVLNGLNDPHPRVRYAALN 411 (1075)
T ss_pred HhcCChhhehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 01 1 3333444554 7888888888888887754211 1111 235666777789999999999999
Q ss_pred HHHHHcCC-cccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 708 ALWNLAFN-PGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 708 ~L~~l~~~-~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
++..++.+ ...-.+-..+-.++.|+..+.+..++.++..|+.||-++..+.+.
T Consensus 412 aigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~ 465 (1075)
T KOG2171|consen 412 AIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK 465 (1075)
T ss_pred HHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH
Confidence 99999973 333344445567889999999988899999999999999888763
No 47
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.12 E-value=1.4e-08 Score=115.72 Aligned_cols=330 Identities=17% Similarity=0.146 Sum_probs=233.0
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccCh
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 459 (837)
.++.+.+++.++++.+|..|+.++.++...+++. +... .++.+.++|.+.++.++..|+.++..+..++
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----------~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 183 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----------VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCND 183 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----------HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----------HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCc
Confidence 3588899999999999999999999988664443 3333 6889999999999999999999999992223
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (837)
+....+. ...+..|.+++...++-.+..++.++..++........- ...++.+..++. +.++.+...++.++..
T Consensus 184 ~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~---s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 184 DSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQ---SSSPSVVYEAIRLIIK 257 (526)
T ss_dssp HHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred chhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhh---ccccHHHHHHHHHHHH
Confidence 2211111 112455556667789999999999999988654221100 346777888885 3778899999999998
Q ss_pred hhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHc-CCCCHHHHH
Q 003227 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT-RSPHEGVRQ 618 (837)
Q Consensus 540 l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~~~~ 618 (837)
+...+. .-..+++.|..++.+.+ +.++..++..|..++... ...+. .....+..+ .+++..++.
T Consensus 258 l~~~~~-----~~~~~~~~L~~lL~s~~-~nvr~~~L~~L~~l~~~~------~~~v~---~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 258 LSPSPE-----LLQKAINPLIKLLSSSD-PNVRYIALDSLSQLAQSN------PPAVF---NQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HSSSHH-----HHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHCCHC------HHHHG---THHHHHHHHHCSSSHHHHH
T ss_pred hhcchH-----HHHhhHHHHHHHhhccc-chhehhHHHHHHHhhccc------chhhh---hhhhhhheecCCCChhHHH
Confidence 876554 33457889999999654 889999999999998741 12222 222233344 478999999
Q ss_pred HHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccC
Q 003227 619 EAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSE 697 (837)
Q Consensus 619 ~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~ 697 (837)
.++.+|..++... +... .++.|...+.. ..+++++..++..+..++.. +.... -.++.+++++..+
T Consensus 323 ~~l~lL~~l~~~~-n~~~-----Il~eL~~~l~~--~~d~~~~~~~i~~I~~la~~~~~~~~-----~~v~~l~~ll~~~ 389 (526)
T PF01602_consen 323 KALDLLYKLANES-NVKE-----ILDELLKYLSE--LSDPDFRRELIKAIGDLAEKFPPDAE-----WYVDTLLKLLEIS 389 (526)
T ss_dssp HHHHHHHHH--HH-HHHH-----HHHHHHHHHHH--C--HHHHHHHHHHHHHHHHHHGSSHH-----HHHHHHHHHHHCT
T ss_pred HHHHHHhhccccc-chhh-----HHHHHHHHHHh--ccchhhhhhHHHHHHHHHhccCchHH-----HHHHHHHHhhhhc
Confidence 9999999998643 3333 36777788844 25888999999999998853 22211 1567788888877
Q ss_pred CHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 698 AEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 698 ~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
++.+...+...+.++.. +++.+..+ +..|++.+.+-..+.++..+++.++..+....
T Consensus 390 ~~~~~~~~~~~i~~ll~~~~~~~~~~-----l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~ 447 (526)
T PF01602_consen 390 GDYVSNEIINVIRDLLSNNPELREKI-----LKKLIELLEDISSPEALAAAIWILGEYGELIE 447 (526)
T ss_dssp GGGCHCHHHHHHHHHHHHSTTTHHHH-----HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT
T ss_pred cccccchHHHHHHHHhhcChhhhHHH-----HHHHHHHHHHhhHHHHHHHHHhhhcccCCccc
Confidence 77777777777877765 45554433 66888888876678888999999998765443
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.11 E-value=2.3e-08 Score=113.96 Aligned_cols=326 Identities=17% Similarity=0.130 Sum_probs=228.1
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-C
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-N 458 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~ 458 (837)
.+..+.+=+.++++.++..|..+|++++.. + +. .-.++.+.+++.++++.+|+.|+.++..+.. +
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---------~----~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~ 145 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP---------E----MA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD 145 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---------H----HH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc---------c----hh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Confidence 346777778889999999999999997721 1 22 2246789999999999999999999999987 5
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh-ccCccchHHHHhhCCHHHHHHHHHhh-CCCCHHHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKW-SSGGDGVLERAAGA 536 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l-~~~~~~~~~l~~~g~i~~L~~lL~~~-~~~~~~~~~~a~~~ 536 (837)
++.-+. . -++.+.+++.+.++.++..|+.++..+ ..++... ..++.++..|.+. ...++-.+..++.+
T Consensus 146 p~~~~~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~------~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 146 PDLVED---E-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK------SLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp HCCHHG---G-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT------THHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHH---H-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh------hhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 543222 1 378899999999999999999999999 2211111 2344444443321 56888899999999
Q ss_pred HHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHH
Q 003227 537 LANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (837)
Q Consensus 537 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~ 616 (837)
|..++........ ....++.+..++.+.+ +.+...++.++..+... .. .-..+++.|..++.++++.+
T Consensus 216 l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~-~~V~~e~~~~i~~l~~~----~~-----~~~~~~~~L~~lL~s~~~nv 283 (526)
T PF01602_consen 216 LRRYAPMEPEDAD--KNRIIEPLLNLLQSSS-PSVVYEAIRLIIKLSPS----PE-----LLQKAINPLIKLLSSSDPNV 283 (526)
T ss_dssp HTTSTSSSHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSS----HH-----HHHHHHHHHHHHHTSSSHHH
T ss_pred HHhcccCChhhhh--HHHHHHHHHHHhhccc-cHHHHHHHHHHHHhhcc----hH-----HHHhhHHHHHHHhhcccchh
Confidence 9988764332220 0346788888888765 88999999999988763 21 23578899999999999999
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhc-
Q 003227 617 RQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR- 695 (837)
Q Consensus 617 ~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~- 695 (837)
+..++..|..++... ...+ . .....+..+.. +.+..++..|+.+|..++....... .++.|...+.
T Consensus 284 r~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~--~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~ 350 (526)
T PF01602_consen 284 RYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLY--DDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSE 350 (526)
T ss_dssp HHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHC--SSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHH
T ss_pred ehhHHHHHHHhhccc--chhh-h--hhhhhhheecC--CCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHh
Confidence 999999999998865 2222 2 23333445542 3899999999999999986543322 5777888884
Q ss_pred cCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 696 SEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 696 s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
..+++++..++..+..++. .+...... ++.+++++..+. +.+...+...+..+....++
T Consensus 351 ~~d~~~~~~~i~~I~~la~~~~~~~~~~-----v~~l~~ll~~~~-~~~~~~~~~~i~~ll~~~~~ 410 (526)
T PF01602_consen 351 LSDPDFRRELIKAIGDLAEKFPPDAEWY-----VDTLLKLLEISG-DYVSNEIINVIRDLLSNNPE 410 (526)
T ss_dssp C--HHHHHHHHHHHHHHHHHHGSSHHHH-----HHHHHHHHHCTG-GGCHCHHHHHHHHHHHHSTT
T ss_pred ccchhhhhhHHHHHHHHHhccCchHHHH-----HHHHHHhhhhcc-ccccchHHHHHHHHhhcChh
Confidence 4588899999999999986 44333332 447777777653 44566666666666555443
No 49
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.4e-08 Score=104.96 Aligned_cols=257 Identities=19% Similarity=0.083 Sum_probs=196.1
Q ss_pred HHHHHHhhhcC-CHHHHHHHHHHhhccc-cccCcccccchhhHHHHHHhCcHHHHHHHHhcC-ChhHHHHHHHHHHHhcc
Q 003227 381 AGLLLSLMQST-QEDVQERAATGLATFV-VINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV 457 (837)
Q Consensus 381 i~~L~~ll~~~-~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~ 457 (837)
+..|++-|+.. |+..|.+|+.-|+.+. .++++.++ .+--...+|.|+.+|+++ +.+++..|+++|.+|+.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs-------~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLS-------GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhc-------cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 35666667554 8888888887777654 33333322 233345689999999985 89999999999999999
Q ss_pred -ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHH
Q 003227 458 -NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (837)
Q Consensus 458 -~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~ 535 (837)
-|.....+++.++||.+++-|.. +..++.|+++.+|..|+.. .-..+.++|++...+..+. .-+..+++.|+.
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylD---FFSi~aQR~Ala 316 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLD---FFSIHAQRVALA 316 (1051)
T ss_pred hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHH---HHHHHHHHHHHH
Confidence 78888999999999999976654 7899999999999999973 3467889999999998884 356778999999
Q ss_pred HHHHhhcC--CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC-
Q 003227 536 ALANLAAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP- 612 (837)
Q Consensus 536 ~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~- 612 (837)
+..|+|.. ++--..++ .++|.|..+|...+ ....+.++-++..++......++....+...+.+....+++.-.
T Consensus 317 iaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~ 393 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFVM--EALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTP 393 (1051)
T ss_pred HHHHHHhcCCCccchHHH--HHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCc
Confidence 99999973 33333443 36899999999886 67778899999999887666777777888889999998887654
Q ss_pred ---CHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhh
Q 003227 613 ---HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQS 652 (837)
Q Consensus 613 ---~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~ 652 (837)
+..+....+..|..++.. +.....+.+.+....|..+|..
T Consensus 394 t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 394 TILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 234555567777777777 5556666666666666666653
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3e-07 Score=104.15 Aligned_cols=348 Identities=20% Similarity=0.166 Sum_probs=217.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHh----cCChhHHHHHHHHHHHhcc
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK----SWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~~l~~ 457 (837)
+.+.+.|.+++..++..|++++..++...+.+.+ -+..+ ...+|.++..+. .+|...-..+..+|..++.
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~----~~~~~--~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS----EVDKF--RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchH----HHHHH--HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 6777778766666999999999998866553322 12222 224565655554 4677777889999999887
Q ss_pred -ChHH-HHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhccCc-cchHHHHhhC--CHHHHHHHHHhhCCC-----
Q 003227 458 -NAKV-AKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGE-EHKGAIADAG--GVKALVDLIFKWSSG----- 525 (837)
Q Consensus 458 -~~~~-~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g--~i~~L~~lL~~~~~~----- 525 (837)
.+.. +..+.+ .++..+++.++ -++.+|..|+..|..++... ...+.....| .++.++.++..-..+
T Consensus 236 ~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~ 313 (1075)
T KOG2171|consen 236 SEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN 313 (1075)
T ss_pred hchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence 4433 333322 35555555555 37889999999999998762 2222222222 244555555321111
Q ss_pred --------CHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 003227 526 --------GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (837)
Q Consensus 526 --------~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 597 (837)
...-...|..+|-.++.+=..+. +-.-.++.+-.++.+.+ ..-+.+++.+|..++.+..+ . ..-.
T Consensus 314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~EGc~~---~-m~~~ 386 (1075)
T KOG2171|consen 314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTE-WKERHAALLALSVIAEGCSD---V-MIGN 386 (1075)
T ss_pred ccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcccHH---H-HHHH
Confidence 01134456666666664321110 00112455555667665 88889999999999886321 1 1111
Q ss_pred ccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCcc
Q 003227 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA 676 (837)
Q Consensus 598 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~ 676 (837)
=..+++.++..|.++++.||.+|+.+++.++.+ .+.-+.-.....++.|+..+.+ ..+++++..|+.++.|++..-.
T Consensus 387 l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~--~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 387 LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS--TQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc--cCchHHHHHHHHHHHHHHHhCc
Confidence 246777788889999999999999999999998 4443333444567788888887 6889999999999999885421
Q ss_pred chhhhhc--cCChHH-HHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHH--cCCHHHHHHHHhcCCcHHHHHHHHH
Q 003227 677 NCIAIGR--EGGVAP-LIALARSEAEDVHETAAGALWNLAFNPGNALRIVE--EGGVPALVHLCSSSGSKMARFMAAL 749 (837)
Q Consensus 677 ~~~~l~~--~~~i~~-L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~--~~~i~~L~~ll~~~~~~~~~~~a~~ 749 (837)
.. .+.. .+.+++ +..++.++.+.+++.++.+|...+...+.. +.. .-.+|.|.+.|.+.+++..|.....
T Consensus 465 ~~-~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~--F~pY~d~~Mp~L~~~L~n~~~~d~r~Lrgk 539 (1075)
T KOG2171|consen 465 KS-ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK--FIPYFDRLMPLLKNFLQNADDKDLRELRGK 539 (1075)
T ss_pred HH-HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh--hHhHHHHHHHHHHHHHhCCCchhhHHHHhh
Confidence 11 1111 234443 333457888999999999999988533322 222 2357788888887665554444333
No 51
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.98 E-value=1.7e-08 Score=105.24 Aligned_cols=269 Identities=17% Similarity=0.139 Sum_probs=175.2
Q ss_pred ccccccCCCCcchHHHHHHHHHHHHHHHHHhhhcCcCchhhHHHhhh---HHHHHHhhh-c-CCHHHHHHHHHHhhcccc
Q 003227 334 LDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQG---AGLLLSLMQ-S-TQEDVQERAATGLATFVV 408 (837)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~l~~l~s~~l~~l~~~~~~~~~~~~~~~~---i~~L~~ll~-~-~~~~~~~~a~~~L~~l~~ 408 (837)
..|......+..+++....+..+.+..... ...++...| +..++.+|+ . +++++.......+..+..
T Consensus 15 i~W~~~~ra~~is~~~~~~ik~~~~~~~~~--------~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~ 86 (312)
T PF03224_consen 15 IPWDGYVRAGLISEEDLSLIKKLDKQSKEE--------RRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLS 86 (312)
T ss_dssp --HHHHHHTTSS-HHHHHHHHHHHHHHH---------------------------HHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhCCCCHHHHHHHHHHHCCCHHH--------HHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHh
Confidence 445544445555555555544443332111 111233333 567777773 3 678888899999988887
Q ss_pred ccCcccccchhhHHHHHH------hCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc--
Q 003227 409 INDENASIDCGRAEAVMK------DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-- 480 (837)
Q Consensus 409 ~~~~~~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~-- 480 (837)
.++.. .+.+.. .....++++++.++|..++..|+..|..+......+..-...+.++.+++.+++
T Consensus 87 ~~~~~-------~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l 159 (312)
T PF03224_consen 87 DDPSR-------VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQL 159 (312)
T ss_dssp -SSSS-------HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT
T ss_pred cCHHH-------HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhh
Confidence 66644 333333 235788999999999999999999999998743333332224457888888765
Q ss_pred --CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHH----hhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcC
Q 003227 481 --MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF----KWSSGGDGVLERAAGALANLAADDKCSMEVALAG 554 (837)
Q Consensus 481 --~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~----~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g 554 (837)
++.+++..|+.+|.++...++.|..+.+.++++.++.++. .....+.+++.+++.++|-|+.+++....+...+
T Consensus 160 ~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~ 239 (312)
T PF03224_consen 160 SSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY 239 (312)
T ss_dssp -HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS
T ss_pred cCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc
Confidence 4566779999999999999999999999999999999992 1145667899999999999999999999999999
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC--CCHHHHHH
Q 003227 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS--PHEGVRQE 619 (837)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~ 619 (837)
.|+.|+.+++....+++.+-++.++.|+...+. ......+...++++.+-.+... .|+++.+.
T Consensus 240 ~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~--~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 240 LIPLLADILKDSIKEKVVRVSLAILRNLLSKAP--KSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS--TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred hHHHHHHHHHhcccchHHHHHHHHHHHHHhccH--HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999988889999999999999998532 2256666667776666555544 37777654
No 52
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.97 E-value=3.7e-08 Score=99.55 Aligned_cols=278 Identities=23% Similarity=0.227 Sum_probs=205.7
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCHH--HHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 461 VAKAVAEEGGINILAVLARSMNRL--VAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL~~~~~~--~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
.+..|...|+++.|++++..++.+ ++..|...|..+... +|++.+...| ...++.+-+ ..+.++..+..+++|.
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK--~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAK--EREPVELARSVAGILE 247 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhh--hcCcHHHHHHHHHHHH
Confidence 466777889999999999987644 588889888887754 6788888776 666666664 4577899999999999
Q ss_pred HhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 539 NLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 539 ~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
++-.+ ++....+++.|+++.++-..+..+ +.+.++|+-+|.|++.++ ....+..+++..+.+.|..+-.+.|+-++
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~-P~lLRH~ALAL~N~~L~~--~~a~qrrmveKr~~EWLF~LA~skDel~R 324 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTD-PALLRHCALALGNCALHG--GQAVQRRMVEKRAAEWLFPLAFSKDELLR 324 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeecccCC-HHHHHHHHHHhhhhhhhc--hhHHHHHHHHhhhhhhhhhhhcchHHHHH
Confidence 99985 567888999999999999988876 999999999999999875 34456677788888999988888888899
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccC
Q 003227 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSE 697 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~ 697 (837)
..||-+.+-|+.+.+....+..+|.+..+-.++.+ -++.--.. ........ ....-++.|+.+|++.
T Consensus 325 ~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~---~DP~~FAR------D~hd~aQG----~~~d~LqRLvPlLdS~ 391 (832)
T KOG3678|consen 325 LHACLAVAVLATNKEVEREVRKSGTLALVEPLVAS---LDPGRFAR------DAHDYAQG----RGPDDLQRLVPLLDSN 391 (832)
T ss_pred HHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhc---cCcchhhh------hhhhhhcc----CChHHHHHhhhhhhcc
Confidence 99999999999998887788888887777777665 33221111 00000000 0123577888899876
Q ss_pred CHHHHHHHHHHHHHHcC--CcccHHH-HHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 698 AEDVHETAAGALWNLAF--NPGNALR-IVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 698 ~~~v~~~a~~~L~~l~~--~~~~~~~-i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.-+.+..++.-++.=+. ...++.. +-+-|+|+.|-++..+++ +....-|..||..+.++-|
T Consensus 392 R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d-~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 392 RLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPD-EVAAKFASEALTVIGEEVP 455 (832)
T ss_pred hhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHhccccC
Confidence 66666555444433322 2233333 446788999999998765 6677788899999887655
No 53
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.97 E-value=4.4e-10 Score=79.54 Aligned_cols=47 Identities=40% Similarity=0.780 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccccCCC
Q 003227 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLR 86 (837)
Q Consensus 40 ~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~l~ 86 (837)
|..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+++.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 57899999999999999999999999999999999888999987763
No 54
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.97 E-value=8.5e-08 Score=96.67 Aligned_cols=330 Identities=15% Similarity=0.102 Sum_probs=224.2
Q ss_pred HHHHHHhhhcC-CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccCh
Q 003227 381 AGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (837)
Q Consensus 381 i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 459 (837)
+..++.++... .++........+-.+...+.......... ..-.....-+..+.+|...+.-+...+.+++..++...
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~-a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDY-AHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHH-HHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 56677777543 34444444444444444333321110000 00111223567789999999999988999998887632
Q ss_pred HHHHHHHHcCC-HHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGG-INILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 460 ~~~~~i~~~g~-i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
..+-...+... ...|-..+++ .+..-...|+++|..+...++.|-.+....|+..++..+.+ ...+-.++.+.+.++
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s-~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILAS-TKCGFQLQYQSIFCI 224 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhc-cCcchhHHHHHHHHH
Confidence 21111111111 2233344444 56667778889999999999999999999999999999953 566788999999999
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCC---cccchhhccchHHHHHHHcCC--C
Q 003227 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS---NNSAVGQEAGALEALVQLTRS--P 612 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~~~i~~L~~lL~~--~ 612 (837)
|-|+.++...+.+..-+.|+.|.+++.+...+.|.+-++.++.|+...+++.. +....++..++.+.+-.+... .
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkys 304 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYS 304 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCC
Confidence 99999999888887779999999999988778999999999999998643222 222344455555544444332 3
Q ss_pred CHHHHHHHHHH-------HHhhcCChh------------------------hHHHHHH--cCCHHHHHHHHhhcCCCCHH
Q 003227 613 HEGVRQEAAGA-------LWNLSFDDR------------------------NREAIAA--AGGVEALVVLAQSCSNASPG 659 (837)
Q Consensus 613 ~~~~~~~a~~~-------L~~Ls~~~~------------------------~~~~l~~--~g~i~~L~~ll~~~~~~~~~ 659 (837)
|+++....-.. ...|+..++ |...+-+ ...++.|+.+|+. +.++.
T Consensus 305 DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~--s~Dp~ 382 (442)
T KOG2759|consen 305 DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET--SNDPI 382 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc--CCCCc
Confidence 65554432211 122333222 2223333 2468899999987 56677
Q ss_pred HHHHHHHHHHhccc-CccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 660 LQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 660 v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
+-.-|+.=++.... .|+++..+.+.||=+.+++++.+++++|+.+|+.|+..+..
T Consensus 383 iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 77778888888876 49999999999999999999999999999999999988753
No 55
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.95 E-value=8.8e-08 Score=96.57 Aligned_cols=278 Identities=13% Similarity=0.108 Sum_probs=202.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhccChH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSVNAK 460 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~ 460 (837)
+..+++|...+.-+...+..++..++............ -.. ...|-..+.+ .+.+....|+++|..+..-++
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~----~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e 189 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSEL----DVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE 189 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHH----HHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcc
Confidence 67888998888888888889999888766655432111 111 1245555665 677888899999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 461 VAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
.|..++..+|+..++..+.+ .+-+++...+.++|.|+.++...+.+...+.++.|.++++ .+..+.|.+-++.+++
T Consensus 190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk--~~~KEKV~Rivlai~~ 267 (442)
T KOG2759|consen 190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVK--ESTKEKVTRIVLAIFR 267 (442)
T ss_pred hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 99999999999999999843 5788999999999999999988888888888999999998 4666788999999999
Q ss_pred HhhcCC-------CchHHHHhcCcHHHHHHHHhc-C-CCHHHHH-------HHHHHHHHHhcC---------------CC
Q 003227 539 NLAADD-------KCSMEVALAGGVHALVMLARS-C-KFEGVQE-------QAARALANLAAH---------------GD 587 (837)
Q Consensus 539 ~l~~~~-------~~~~~l~~~g~i~~L~~ll~~-~-~~~~~~~-------~a~~~L~~l~~~---------------~~ 587 (837)
|+.... +....++..++.+. ++.|.. . +|+++.. .--.-...+++. +.
T Consensus 268 Nll~k~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~ 346 (442)
T KOG2759|consen 268 NLLDKGPDRETKKDIASQMVLCKVLKT-LQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPV 346 (442)
T ss_pred HHhccCchhhHHHHHHHHHHhcCchHH-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcc
Confidence 999854 23344555555544 444432 2 2343322 111111222221 10
Q ss_pred -C---C-Ccccchhh--ccchHHHHHHHcCCC-CHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCH
Q 003227 588 -S---N-SNNSAVGQ--EAGALEALVQLTRSP-HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASP 658 (837)
Q Consensus 588 -~---~-~~~~~~~~--~~~~i~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~ 658 (837)
. . .+|...+. +...+..|+++|... +|.+..-|+.-+.....+ |+.+..+.+.||=+.+++++.+ +++
T Consensus 347 Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh---~d~ 423 (442)
T KOG2759|consen 347 HKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH---EDP 423 (442)
T ss_pred ccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC---CCc
Confidence 0 0 02222222 235788999999876 577777788888888877 8889999999999999999998 999
Q ss_pred HHHHHHHHHHHhcc
Q 003227 659 GLQERAAGALWGLS 672 (837)
Q Consensus 659 ~v~~~A~~~L~~l~ 672 (837)
+|+.+|+.|+..+-
T Consensus 424 ~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 424 EVRYHALLAVQKLM 437 (442)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999987654
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=2.3e-08 Score=98.40 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=65.4
Q ss_pred cCCCCCeEEeCCCCCCCCCH---HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh------------hCCCccEEEec
Q 003227 149 RHEALESLQLGPDFCERITS---DAVKAIALCCPKLKKLRLSGIRDICGDAINALAK------------LCPNLTDIGFL 213 (837)
Q Consensus 149 ~~~~L~~L~l~~~~~~~~~~---~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~------------~~~~L~~L~l~ 213 (837)
.||+|++|+|+ -+-++. .++..+.++|..|++|.|++| .+...+-..++. .-|.|+.+...
T Consensus 90 ~~~~L~~ldLS---DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 90 GCPKLQKLDLS---DNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred cCCceeEeecc---ccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 45555555554 112222 333334444555555555555 444433222211 22455555555
Q ss_pred CCCCCCh------HHhhCCCCCCEeeccCCCCCCHHHHH---HHHhcCCCccEEEeccCCCCHHHHHHHHh---cCcccc
Q 003227 214 DCLNVDE------VALGNVLSVRFLSVAGTSNMKWGVVS---QVWHKLPKLVGLDVSRTDVGPITISRLLT---SSKSLK 281 (837)
Q Consensus 214 ~~~~~~~------~~l~~l~~L~~L~ls~~~~i~~~~l~---~~~~~~~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~ 281 (837)
.|..-+. ..+..++.|+.+.++.|. |...++. .-..+|++|+.|||..|-++..+-..+.. .++.|+
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 5532222 123445555555555542 2222221 12245555666665555444333333222 345555
Q ss_pred cccccccccccchhHHHHH
Q 003227 282 VLCALNCPVLEEENNISAV 300 (837)
Q Consensus 282 ~l~l~~c~~i~~~~~~~~~ 300 (837)
.|++++|. +.+.|..++.
T Consensus 245 El~l~dcl-l~~~Ga~a~~ 262 (382)
T KOG1909|consen 245 ELNLGDCL-LENEGAIAFV 262 (382)
T ss_pred eecccccc-cccccHHHHH
Confidence 55556655 5555533333
No 57
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=4.8e-07 Score=87.40 Aligned_cols=298 Identities=18% Similarity=0.153 Sum_probs=203.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhh
Q 003227 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVA-EEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (837)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~ 509 (837)
..++.++.+.+|.++..|+..+..++.. ..+.-.. +...++.+.+++....+ .+.|+.+|.|++..+..++.+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 3789999999999999999999998876 1111111 11238889999888766 778999999999999999998888
Q ss_pred CCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHh-------cCcHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 003227 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-------AGGVHALVMLARSCKFE-GVQEQAARALAN 581 (837)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~-------~g~i~~L~~ll~~~~~~-~~~~~a~~~L~~ 581 (837)
.+..++..+.+ .........+.+|.|++++++....+.. .|.+.....+...+-+. .-....+-++.|
T Consensus 83 -~~k~l~~~~~~---p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 83 -LLKVLMDMLTD---PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred -HHHHHHHHhcC---cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 77778888843 4345777888999999998765544322 23344444444433321 223567778899
Q ss_pred HhcCCCCCCcccchhhccchHHH-HHHHcCCCCHHHHHH-HHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHH
Q 003227 582 LAAHGDSNSNNSAVGQEAGALEA-LVQLTRSPHEGVRQE-AAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPG 659 (837)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~i~~-L~~lL~~~~~~~~~~-a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~ 659 (837)
++. .+..+..+.+...++. .+.-+.+++..+|.. .+++|.|.+.+..+...+.. ..+..|..+|..
T Consensus 159 ls~----~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlP------- 226 (353)
T KOG2973|consen 159 LSQ----FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLP------- 226 (353)
T ss_pred Hhh----hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhh-------
Confidence 988 5666777766553332 112234456666665 78999999998888777766 455555554432
Q ss_pred HHHHHHHHHHhcccCccchhhhhccCChHHHHHHh-----ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHH
Q 003227 660 LQERAAGALWGLSVSEANCIAIGREGGVAPLIALA-----RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHL 734 (837)
Q Consensus 660 v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL-----~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~l 734 (837)
++..++.... +...+|.=+++| +.+++.++..-+.+|..|+.....|+.++..|+.+.+-++
T Consensus 227 -----------lagpee~sEE--dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilREl 293 (353)
T KOG2973|consen 227 -----------LAGPEELSEE--DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILREL 293 (353)
T ss_pred -----------cCCccccCHH--HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHH
Confidence 2222111111 011344433666 3578999999999999999999999999998888877777
Q ss_pred HhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 735 CSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 735 l~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
-....++.++..+-.....+..+.+.
T Consensus 294 hk~e~ded~~~ace~vvq~Lv~~e~~ 319 (353)
T KOG2973|consen 294 HKWEEDEDIREACEQVVQMLVRLEPE 319 (353)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhcccc
Confidence 76666788888888877777776653
No 58
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.4e-07 Score=99.53 Aligned_cols=353 Identities=14% Similarity=0.096 Sum_probs=238.3
Q ss_pred hhcCcCchhhHHHhhhHHHHHHhhhc-CCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CCh
Q 003227 365 AESNPQGLDDFWLKQGAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WRE 442 (837)
Q Consensus 365 ~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~ 442 (837)
...|.+.+..|-....||.|+.+|++ .+.+++..|+++|.+|+.-- |.....+++.++||.|+.-|.. +.-
T Consensus 197 ~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-------P~S~a~vV~~~aIPvl~~kL~~Ieyi 269 (1051)
T KOG0168|consen 197 SMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-------PRSSAIVVDEHAIPVLLEKLLTIEYI 269 (1051)
T ss_pred hhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-------cchhheeecccchHHHHHhhhhhhhh
Confidence 34566666666677778999999955 57999999999999988533 3445678999999999987766 788
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC--ccchHHHHhhCCHHHHHHHHH
Q 003227 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIF 520 (837)
Q Consensus 443 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~ 520 (837)
++.+.++.+|..++... -..+.+.|++...+..+.--...+|+.|+.+..|++.. ++--..+++ ++|.|..+|.
T Consensus 270 DvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs 345 (1051)
T KOG0168|consen 270 DVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLS 345 (1051)
T ss_pred HHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHh
Confidence 89999999999999832 26788999999999999888889999999999999863 455555555 5999999996
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcC----CCchHHHHhcCcHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCCCCCccc
Q 003227 521 KWSSGGDGVLERAAGALANLAAD----DKCSMEVALAGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSNSNNS 593 (837)
Q Consensus 521 ~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~ 593 (837)
. .+....+.++-++..++.. ++--+++...|.|....+++.-.+ ...+....++.+.-++.. .+...
T Consensus 346 ~---~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~---~pl~~ 419 (1051)
T KOG0168|consen 346 Y---QDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG---SPLLF 419 (1051)
T ss_pred h---ccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC---ChHHH
Confidence 4 7777888999888888862 333477777888888888776432 123344555666666654 34444
Q ss_pred chhhccchHHHHHHHcCCC----C-----------HHHHHHHHH------------------------------------
Q 003227 594 AVGQEAGALEALVQLTRSP----H-----------EGVRQEAAG------------------------------------ 622 (837)
Q Consensus 594 ~~~~~~~~i~~L~~lL~~~----~-----------~~~~~~a~~------------------------------------ 622 (837)
..+...++...|..+|... + .++-+....
T Consensus 420 ~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~ 499 (1051)
T KOG0168|consen 420 RTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWR 499 (1051)
T ss_pred HHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCc
Confidence 5555556555555554321 0 011110000
Q ss_pred ---------------HHHhhcCC------------hhhHHHHHHc----------CCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 623 ---------------ALWNLSFD------------DRNREAIAAA----------GGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 623 ---------------~L~~Ls~~------------~~~~~~l~~~----------g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
++..+-.+ ...++.+... ..++.|++...+ +.++.||..++
T Consensus 500 d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsS--sA~~~VR~kcL 577 (1051)
T KOG0168|consen 500 DDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSS--SANPDVRYKCL 577 (1051)
T ss_pred cccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhc--cCCchhhHHHH
Confidence 00000000 0011111111 247777777765 68999999999
Q ss_pred HHHHhccc--Ccc-chhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-Ccc-cHHHHHHcCCHHHHHHHHh
Q 003227 666 GALWGLSV--SEA-NCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPG-NALRIVEEGGVPALVHLCS 736 (837)
Q Consensus 666 ~~L~~l~~--~~~-~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~-~~~~i~~~~~i~~L~~ll~ 736 (837)
.+|..+.. +.+ .+..+.....-..+-.+|.+.+..|.--|+...--|+. .|+ --..++++|++...-++..
T Consensus 578 ~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 578 SAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 99988863 333 34444445555567788888888888777777777765 233 2344567777777777766
No 59
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3.8e-08 Score=103.82 Aligned_cols=350 Identities=15% Similarity=0.019 Sum_probs=210.7
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccch--hhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDC--GRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (837)
+.|.|.++|.+++...++-|..+|.+++.++.+.+..+- ... .-.+|.++++.+++++.+|..|+.++....-
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl-----~~mipkfl~f~~h~spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL-----NIMIPKFLQFFKHPSPKIRSHAVGCVNQFII 203 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCch-----HHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence 468999999999999999999999998865443211100 001 1247899999999999999999999988665
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
.....-...-..-++.+..+-.+++++||...|.++.-|.....-+-.---.+.++.++..- .+.++++.-.|+.-.
T Consensus 204 ~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~t---qd~dE~VALEACEFw 280 (885)
T KOG2023|consen 204 IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT---QDVDENVALEACEFW 280 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc---cCcchhHHHHHHHHH
Confidence 22111111111136677777788999999999999998885321111111122344454444 457788999999999
Q ss_pred HHhhcCCCchHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH----cC-
Q 003227 538 ANLAADDKCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL----TR- 610 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~l----L~- 610 (837)
..++..+..+..+... ..+|.|+.-+..+++..+ |.. ....+..-+-++ +++=|.+.+- ..
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~-------LL~-~~eeD~~vpDre----eDIkPRfhksk~~~~~~ 348 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII-------LLK-NNEEDESVPDRE----EDIKPRFHKSKEHGNGE 348 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH-------Hhc-CccccccCCchh----hhccchhhhchhccCcc
Confidence 9999988655555432 456666665554432221 111 111100111111 1111111111 00
Q ss_pred ---C--------------CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhh-cCCCCHHHHHHHHHHHHhcc
Q 003227 611 ---S--------------PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQS-CSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 611 ---~--------------~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~v~~~A~~~L~~l~ 672 (837)
+ .+-.+|+..+.+|--|+. +.....++.++++++. ..+++..+|++++.+|+.++
T Consensus 349 ~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 349 DADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIA 421 (885)
T ss_pred ccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHH
Confidence 0 012456655555554443 2223345555555543 23488999999999999887
Q ss_pred cCccchhhhhcc--CChHHHHHHhccCCHHHHHHHHHHHHHHcCCc--ccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHH
Q 003227 673 VSEANCIAIGRE--GGVAPLIALARSEAEDVHETAAGALWNLAFNP--GNALRIVEEGGVPALVHLCSSSGSKMARFMAA 748 (837)
Q Consensus 673 ~~~~~~~~l~~~--~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~--~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~ 748 (837)
..- -+-+..+ ..+|.|+.+|.++.+-||...+|+|.+.+... ..+.+... ..+..|++.+-+++ ..||+.|+
T Consensus 422 EGc--M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~ll~~llD~N-K~VQEAAc 497 (885)
T KOG2023|consen 422 EGC--MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGLLRRLLDSN-KKVQEAAC 497 (885)
T ss_pred HHH--hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHHHHHHhccc-HHHHHHHH
Confidence 531 0112221 25677889999999999999999999998732 22322222 13334444444454 88999999
Q ss_pred HHHHHhhCCCCc
Q 003227 749 LALAYMFDGRMD 760 (837)
Q Consensus 749 ~aL~~l~~~~~~ 760 (837)
.|.+.+-++..+
T Consensus 498 sAfAtleE~A~~ 509 (885)
T KOG2023|consen 498 SAFATLEEEAGE 509 (885)
T ss_pred HHHHHHHHhccc
Confidence 999999876553
No 60
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.87 E-value=1.2e-07 Score=98.85 Aligned_cols=228 Identities=21% Similarity=0.160 Sum_probs=161.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch-HHHHhc------CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS-MEVALA------GGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~l~~~------g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
...++.+|... +.++++.+.++..+..+..+...+ ..+... ....++++++..+ |..++..|+..+..+..
T Consensus 57 ~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 57 ASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -----HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 66777888763 478899999999999999865444 444431 2578888877766 59999999999999988
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCC----CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHH-----hhcCC
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRS----PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLA-----QSCSN 655 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll-----~~~~~ 655 (837)
.+.... .....+.++.+++.+.+ ++.+.+..|+.+|.+|...++.|..+.+.|+++.+.+++ .+ +.
T Consensus 135 ~~~~~~----~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~-~~ 209 (312)
T PF03224_consen 135 QGPKRS----EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNS-NS 209 (312)
T ss_dssp STTT------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred cCCccc----cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccC-CC
Confidence 643222 11114677778877765 355677889999999999999999999999999999999 22 35
Q ss_pred CCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhc-cCCHHHHHHHHHHHHHHcCCcc--cHHHHHHcCCHHHHH
Q 003227 656 ASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-SEAEDVHETAAGALWNLAFNPG--NALRIVEEGGVPALV 732 (837)
Q Consensus 656 ~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~--~~~~i~~~~~i~~L~ 732 (837)
.+..++++++.+++-++.+++....+...+.++.|+++++ +..+.|.+-+..++.|+...+. ....|+..|+++.+-
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~ 289 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQ 289 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHH
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHH
Confidence 7788999999999999999999999999999999999996 4668999999999999998665 777888866666665
Q ss_pred HHHhcC-CcHHHHHH
Q 003227 733 HLCSSS-GSKMARFM 746 (837)
Q Consensus 733 ~ll~~~-~~~~~~~~ 746 (837)
.+.... .++++.+.
T Consensus 290 ~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 290 NLSERKWSDEDLTED 304 (312)
T ss_dssp HHHSS--SSHHHHHH
T ss_pred HHhcCCCCCHHHHHH
Confidence 555432 23555544
No 61
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7e-10 Score=111.92 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=71.4
Q ss_pred CCcceeeecCcccchHH---HHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCC--CHHHHHHHHhc
Q 003227 103 MNLQKLRFRGAESADSI---IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERI--TSDAVKAIALC 177 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~~ 177 (837)
.+|+.+.|.++...... ....|++++.|+|+.+-.-....+..+.+.+|+|+.|+|+. +.+ ...+.. ...
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~---Nrl~~~~~s~~--~~~ 195 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS---NRLSNFISSNT--TLL 195 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc---ccccCCccccc--hhh
Confidence 34555555555443322 22245555555555544233445555555556666655541 111 111111 113
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChH--HhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCc
Q 003227 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV--ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L 255 (837)
.++|+.|.|++| +++...+..+...||+|+.|++.+|..+.-. ...-++.|+.|||++|..++-.. ......+|+|
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~L 273 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ-GYKVGTLPGL 273 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc-ccccccccch
Confidence 455555666665 5555555555555566666665555322221 12234455555555554443222 1222345555
Q ss_pred cEEEeccCC
Q 003227 256 VGLDVSRTD 264 (837)
Q Consensus 256 ~~L~l~~~~ 264 (837)
..|+++.|.
T Consensus 274 ~~Lnls~tg 282 (505)
T KOG3207|consen 274 NQLNLSSTG 282 (505)
T ss_pred hhhhccccC
Confidence 555555543
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.1e-09 Score=110.58 Aligned_cols=206 Identities=20% Similarity=0.176 Sum_probs=142.5
Q ss_pred cccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccc--hHH--HHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeE
Q 003227 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESA--DSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESL 156 (837)
Q Consensus 81 ~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~--~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L 156 (837)
+.+.++++.+.....+...+.||+++.|+|+++-+. +.+ +...+|+|+.|+++.+. +....-......+++|+.|
T Consensus 124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheE
Confidence 566677777766655578889999999999998554 333 33489999999999864 2111111112257899999
Q ss_pred EeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHH---hhCCCCCCEee
Q 003227 157 QLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVA---LGNVLSVRFLS 233 (837)
Q Consensus 157 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~ 233 (837)
.|+ .| .+++..+..+...||+|+.|.|.+...+.-..... +....|++|+|++|..++.+. +..+|.|+.|+
T Consensus 203 ~l~--~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 203 VLN--SC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred Eec--cC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 996 57 78899999999999999999999874332222111 123469999999997776653 46889999999
Q ss_pred ccCCCCCCH-----HHHHHHHhcCCCccEEEeccCCCC-HHHHHHHHhcCcccccccccccccccchh
Q 003227 234 VAGTSNMKW-----GVVSQVWHKLPKLVGLDVSRTDVG-PITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 234 ls~~~~i~~-----~~l~~~~~~~~~L~~L~l~~~~i~-~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
++.|. +++ .+........++|++|+++.|++. ..++.++- .+++|+.|...... ++.+.
T Consensus 278 ls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~-ln~e~ 342 (505)
T KOG3207|consen 278 LSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNY-LNKET 342 (505)
T ss_pred ccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhccccc-ccccc
Confidence 98872 322 222233456899999999999874 33444443 37888888876554 54444
No 63
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.7e-06 Score=83.90 Aligned_cols=362 Identities=15% Similarity=0.092 Sum_probs=238.8
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (837)
|.|-.-|..++..++.-|+..++.+..+++.|. -.-..-+++.|.++.++.....+|.++...|.+.+..++..++.
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtna---VseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNA---VSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhh---HHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 555556677888999999998888887777652 12234566899999999999999999999999999999999988
Q ss_pred HHHHHHcCCHHHHH--HHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 462 AKAVAEEGGINILA--VLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 462 ~~~i~~~g~i~~L~--~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
-+.+.+..-.+.+- .+-...+.-++.+....+..+.. +++.....-..|.+..|..-++ ..++.-++.+++....
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElk--GteDtLVianciElvt 239 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK--GTEDTLVIANCIELVT 239 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc--CCcceeehhhHHHHHH
Confidence 88888877655443 33333455566677777777765 4555566666777777776665 3456667888899999
Q ss_pred HhhcCCCchHHHHhcCcHHHHHHHHhcCCC-HHHHHHHHH----HHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCC
Q 003227 539 NLAADDKCSMEVALAGGVHALVMLARSCKF-EGVQEQAAR----ALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (837)
Q Consensus 539 ~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~-~~~~~~a~~----~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 613 (837)
.|+..+..++.+...|.|+.+...+...+. |--.-.+.. .+.+.+..+...+...+.+ .-+++...++....|
T Consensus 240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceal--iiaidgsfEmiEmnD 317 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEAL--IIAIDGSFEMIEMND 317 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHH--HHHHHhhHHhhhcCC
Confidence 999999999999999999999998875432 222222332 2333332211111111111 123445556677789
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHcCC--HHHHH-HHHhhcCCCCHHHHHHHHHHHHhcccC---ccch---------
Q 003227 614 EGVRQEAAGALWNLSFDDRNREAIAAAGG--VEALV-VLAQSCSNASPGLQERAAGALWGLSVS---EANC--------- 678 (837)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~--i~~L~-~ll~~~~~~~~~v~~~A~~~L~~l~~~---~~~~--------- 678 (837)
++.++.|+-+++.+..+.+....+...|- .+.++ +.... .-..-++.+..+|.+++.. +..+
T Consensus 318 pdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq---nahakqeaaihaLaaIagelrlkpeqitDgkaeer 394 (524)
T KOG4413|consen 318 PDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ---NAHAKQEAAIHALAAIAGELRLKPEQITDGKAEER 394 (524)
T ss_pred chHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc---cccchHHHHHHHHHHhhccccCChhhccccHHHHH
Confidence 99999999999999999888887777653 33333 33332 3445567788888888742 1111
Q ss_pred --hhhhc-------cCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHH-cCCHHHHHHHHhcCC--cHHHHHH
Q 003227 679 --IAIGR-------EGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE-EGGVPALVHLCSSSG--SKMARFM 746 (837)
Q Consensus 679 --~~l~~-------~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~-~~~i~~L~~ll~~~~--~~~~~~~ 746 (837)
..+.+ ..-...+...++.+.++++.++.+.+..++..|=....|.. ++.+...++.-.... ....+..
T Consensus 395 lrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYe 474 (524)
T KOG4413|consen 395 LRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYE 474 (524)
T ss_pred HHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHH
Confidence 11111 12234466677778999999999999999988877666664 444444444332211 2334555
Q ss_pred HHHHHHH
Q 003227 747 AALALAY 753 (837)
Q Consensus 747 a~~aL~~ 753 (837)
.+.|+.+
T Consensus 475 ccKAiae 481 (524)
T KOG4413|consen 475 CCKAIAE 481 (524)
T ss_pred HHHHHHH
Confidence 5555544
No 64
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2.6e-06 Score=92.21 Aligned_cols=326 Identities=15% Similarity=0.128 Sum_probs=232.7
Q ss_pred hHHHHHHhhhc-CCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc--CChhHHHHHHHHHHHhc
Q 003227 380 GAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLS 456 (837)
Q Consensus 380 ~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~ 456 (837)
-|+.|...+.+ .-.+.|..|+.+|-.++. +++. -+.+.|+++|+..|+. .|+++...++.++.++.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr----------kYR~-~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR----------KYRE-EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH----------HHHH-HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 37888888844 457889999999987663 3333 4566779999999987 49999999999999987
Q ss_pred cChH-----------------HHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHHHHhhccC--ccchHHHHh-hCCHHHH
Q 003227 457 VNAK-----------------VAKAVAEE-GGINILAVLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIAD-AGGVKAL 515 (837)
Q Consensus 457 ~~~~-----------------~~~~i~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~-~g~i~~L 515 (837)
..++ ..+.+.+. +-|..++..+...+-.||..++..+.++... .+.+..+.. .-||..|
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 6331 22334433 4488999999999999999999999999864 367766654 4689999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHHhcCC--C-HHHHHHHHHHHHHHhcCCCCCCc
Q 003227 516 VDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCK--F-EGVQEQAARALANLAAHGDSNSN 591 (837)
Q Consensus 516 ~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~-~g~i~~L~~ll~~~~--~-~~~~~~a~~~L~~l~~~~~~~~~ 591 (837)
+.+|. +..+.++..++..|..+..+....+.++. .+++..|+.+++... + .-|...|...|.||-.. +..
T Consensus 172 mdlL~---DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~---N~S 245 (970)
T KOG0946|consen 172 MDLLR---DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN---NIS 245 (970)
T ss_pred HHHHh---hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh---Ccc
Confidence 99995 36677899999999999997555544444 588999999998532 2 24667899999999887 788
Q ss_pred ccchhhccchHHHHHHHcCCC---CHHH----------HHHHHHHHHhhcCC-------hhhHHHHHHcCCHHHHHHHHh
Q 003227 592 NSAVGQEAGALEALVQLTRSP---HEGV----------RQEAAGALWNLSFD-------DRNREAIAAAGGVEALVVLAQ 651 (837)
Q Consensus 592 ~~~~~~~~~~i~~L~~lL~~~---~~~~----------~~~a~~~L~~Ls~~-------~~~~~~l~~~g~i~~L~~ll~ 651 (837)
++..+.+.+.+|.|.++|... +.++ ...++.++..+... ..++..+...+++..|..++.
T Consensus 246 NQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~ 325 (970)
T KOG0946|consen 246 NQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM 325 (970)
T ss_pred hhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc
Confidence 899999999999999887642 2111 11244555555442 134567888899999999998
Q ss_pred hcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccC------ChHHHH----HHhc-cCCHHHHHHHHHHHHHHcC-Cccc
Q 003227 652 SCSNASPGLQERAAGALWGLSVS-EANCIAIGREG------GVAPLI----ALAR-SEAEDVHETAAGALWNLAF-NPGN 718 (837)
Q Consensus 652 ~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~------~i~~L~----~lL~-s~~~~v~~~a~~~L~~l~~-~~~~ 718 (837)
+ +.-..+++..+..++++...+ ..++..+.+.. -.+.++ .+.. ......|.++..++..+.. +...
T Consensus 326 ~-~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 326 H-PGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred C-CCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 7 236788999999999888754 44554554421 122222 2222 3456788888888877655 4444
Q ss_pred HHHHH
Q 003227 719 ALRIV 723 (837)
Q Consensus 719 ~~~i~ 723 (837)
+.+++
T Consensus 405 q~~~l 409 (970)
T KOG0946|consen 405 QRKFL 409 (970)
T ss_pred HHHHH
Confidence 44443
No 65
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.6e-07 Score=92.29 Aligned_cols=187 Identities=18% Similarity=0.137 Sum_probs=158.6
Q ss_pred cCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHH
Q 003227 439 SWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVD 517 (837)
Q Consensus 439 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ 517 (837)
+.+.+-+..|+.-|..++.+-++...+...||+..++..+++.+..+|+.|+++++.++. +|..+..+++.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 357788889999999999999999999999999999999999999999999999999997 5789999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCCcccch
Q 003227 518 LIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSC-KFEGVQEQAARALANLAAHGDSNSNNSAV 595 (837)
Q Consensus 518 lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 595 (837)
.+. .+.+..++..|+.++..+.++ +.....+...++...|...++++ .+...++.++..+..+.... ......
T Consensus 174 ~ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~---~s~~d~ 248 (342)
T KOG2160|consen 174 ILS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED---KSDEDI 248 (342)
T ss_pred HHc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh---hhhhhH
Confidence 997 566778889999999999985 56678888888899999999985 34788889999999998763 333346
Q ss_pred hhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Q 003227 596 GQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 596 ~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
+...+....+..+....+.++.+.+..++..+...
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 66667777777777777888999988887765544
No 66
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.81 E-value=1.8e-07 Score=94.75 Aligned_cols=271 Identities=24% Similarity=0.188 Sum_probs=194.2
Q ss_pred HHHHHhCcHHHHHHHHhcCChhH--HHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcc
Q 003227 422 EAVMKDGGIRLLLDLAKSWREGL--QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 422 ~~i~~~g~i~~Lv~lL~~~~~~~--~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~ 498 (837)
+.+...|++..|++++.+++-+. +..|++.|..+.. .++++.++..| +..++.+.+. +.++.++..+.+|.++-.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 36888999999999999986554 8889998877654 45677888776 6666666554 567888999999999997
Q ss_pred Cc-cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHH
Q 003227 499 GE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQA 575 (837)
Q Consensus 499 ~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a 575 (837)
++ +.+..+++.|+++.++--.+. .++.+.++++.+|+|++- ..+.+..|++..+-.-|..+..+. |+-.+..|
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rR---t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~A 327 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRR---TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHA 327 (832)
T ss_pred hhHHHHHHHHhhcccchheeeccc---CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHH
Confidence 64 788999999999998877754 779999999999999997 456788899888888888887776 47888999
Q ss_pred HHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCC
Q 003227 576 ARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSN 655 (837)
Q Consensus 576 ~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~ 655 (837)
|-+++.++. +.+....+...|.+..+-.++.+.||..-.. .-......+ ....++.|+.+|.+
T Consensus 328 ClAV~vlat----~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~----~~d~LqRLvPlLdS--- 390 (832)
T KOG3678|consen 328 CLAVAVLAT----NKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGR----GPDDLQRLVPLLDS--- 390 (832)
T ss_pred HHHHhhhhh----hhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccC----ChHHHHHhhhhhhc---
Confidence 999999998 4444445555665554445555544432110 000000000 11357888899876
Q ss_pred CCHHHHHHHHHHHHhccc--Cccchh-hhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCC
Q 003227 656 ASPGLQERAAGALWGLSV--SEANCI-AIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN 715 (837)
Q Consensus 656 ~~~~v~~~A~~~L~~l~~--~~~~~~-~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 715 (837)
..-+.+.-++.-++--+. +..++. .+.+-|+++.|-++..++++.....|..+|..+...
T Consensus 391 ~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 391 NRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred chhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 555555544444443332 234443 455679999999999888888888899999988763
No 67
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.79 E-value=2.1e-06 Score=91.17 Aligned_cols=244 Identities=16% Similarity=-0.001 Sum_probs=179.8
Q ss_pred HhCcHHHHHHHHh-cCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchH
Q 003227 426 KDGGIRLLLDLAK-SWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG 504 (837)
Q Consensus 426 ~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 504 (837)
...+++.++..|. .++++++..++.++.... ++. ++..+++.|.+.++.++..++.+|+.+-..
T Consensus 52 G~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~-~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 52 GKAATELLVSALAEADEPGRVACAALALLAQE-DAL---------DLRSVLAVLQAGPEGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred hHhHHHHHHHHHhhCCChhHHHHHHHHHhccC-ChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCch-----
Confidence 3567889999995 567888776666664222 111 388999999999999999999999876643
Q ss_pred HHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
+..+.|+.++. +.++.++..++.++.... ....+.+..++.+.+ +.++..|+.+|..+..
T Consensus 117 -----~a~~~L~~~L~---~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d-~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 117 -----QAEPWLEPLLA---ASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHED-ALVRAAALRALGELPR 176 (410)
T ss_pred -----HHHHHHHHHhc---CCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCC-HHHHHHHHHHHHhhcc
Confidence 36778888994 578889988887776621 234567888888765 9999999999999875
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERA 664 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A 664 (837)
...++.|...+.+.++.|+..|+.++..+.. + .++..+..+... ........+
T Consensus 177 --------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~---------~A~~~l~~~~~~---~g~~~~~~l 229 (410)
T TIGR02270 177 --------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-R---------LAWGVCRRFQVL---EGGPHRQRL 229 (410)
T ss_pred --------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-H---------hHHHHHHHHHhc---cCccHHHHH
Confidence 3567888889999999999999999977643 1 245566664443 444455555
Q ss_pred HHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHH
Q 003227 665 AGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMAR 744 (837)
Q Consensus 665 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~ 744 (837)
..++... .....++.|..+++++. ++..++.+|..+. ...+++.|++.+.+.. ++
T Consensus 230 ~~~lal~----------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~~---~a 284 (410)
T TIGR02270 230 LVLLAVA----------GGPDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREPP---WA 284 (410)
T ss_pred HHHHHhC----------CchhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCcH---HH
Confidence 5555443 12246788888887644 9999999999887 3467889999997543 88
Q ss_pred HHHHHHHHHhhC
Q 003227 745 FMAALALAYMFD 756 (837)
Q Consensus 745 ~~a~~aL~~l~~ 756 (837)
..|..++..+.-
T Consensus 285 R~A~eA~~~ItG 296 (410)
T TIGR02270 285 RLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHHhhC
Confidence 888998888764
No 68
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.75 E-value=2.1e-06 Score=91.27 Aligned_cols=242 Identities=17% Similarity=0.006 Sum_probs=178.4
Q ss_pred hhHHHHHHhh-hcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 003227 379 QGAGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 379 ~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (837)
.+++.++..+ ..++.++...++.++.... +..+++.|+..|.+.++.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~------------------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE------------------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC------------------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc
Confidence 3468889999 5677888777776665311 11137799999999999999999999986654
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
.. ..+.|+.++++.++.++..++.++..... ...+.+..+|+ +.++.++..|+.+|
T Consensus 116 ~~----------a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~---d~d~~Vra~A~raL 171 (410)
T TIGR02270 116 RQ----------AEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALT---HEDALVRAAALRAL 171 (410)
T ss_pred hH----------HHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 33 57889999999999999988877776332 24668888884 58999999999999
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
+.+.. ...++.|...+.+.+ +.|+..|+.++..+.. ...++.+..+.........
T Consensus 172 G~l~~----------~~a~~~L~~al~d~~-~~VR~aA~~al~~lG~--------------~~A~~~l~~~~~~~g~~~~ 226 (410)
T TIGR02270 172 GELPR----------RLSESTLRLYLRDSD-PEVRFAALEAGLLAGS--------------RLAWGVCRRFQVLEGGPHR 226 (410)
T ss_pred Hhhcc----------ccchHHHHHHHcCCC-HHHHHHHHHHHHHcCC--------------HhHHHHHHHHHhccCccHH
Confidence 98752 345667777777765 9999999999977754 2556677775554444444
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccC
Q 003227 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSE 697 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~ 697 (837)
..+..++... .. ..+++.|..++++ +.++..++.++.. +.....++.|+..+.+.
T Consensus 227 ~~l~~~lal~-~~---------~~a~~~L~~ll~d-----~~vr~~a~~AlG~----------lg~p~av~~L~~~l~d~ 281 (410)
T TIGR02270 227 QRLLVLLAVA-GG---------PDAQAWLRELLQA-----AATRREALRAVGL----------VGDVEAAPWCLEAMREP 281 (410)
T ss_pred HHHHHHHHhC-Cc---------hhHHHHHHHHhcC-----hhhHHHHHHHHHH----------cCCcchHHHHHHHhcCc
Confidence 4444444433 11 1467888888865 3499999999988 45556899999998643
Q ss_pred CHHHHHHHHHHHHHHcC
Q 003227 698 AEDVHETAAGALWNLAF 714 (837)
Q Consensus 698 ~~~v~~~a~~~L~~l~~ 714 (837)
.++..|..++..++-
T Consensus 282 --~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 282 --PWARLAGEAFSLITG 296 (410)
T ss_pred --HHHHHHHHHHHHhhC
Confidence 499999999999885
No 69
>PTZ00429 beta-adaptin; Provisional
Probab=98.72 E-value=2.5e-05 Score=89.11 Aligned_cols=219 Identities=15% Similarity=0.018 Sum_probs=144.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (837)
+..+.+=+.++++.+|..|.++|+.+-. +...+ -.++.+.+.+.+.++.+|+.|+-++.++-. ++
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~---------~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV---------SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc---------HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence 5677777888999999999999997542 11122 234577888889999999999999999876 44
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (837)
+ .+.+.|-++.|.++|.+.++.+...|+.+|..+....... .-...+.+..|+..+ ..-++-.+...+.+|..
T Consensus 173 e---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L---~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 173 Q---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHL---PECNEWGQLYILELLAA 245 (746)
T ss_pred c---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHh
Confidence 2 2334456788999999999999999999999997543221 112233455566666 33566677777777754
Q ss_pred hhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHH
Q 003227 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQE 619 (837)
Q Consensus 540 l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~ 619 (837)
. .+...... ...+..+...+++.+ +.|...|+.++.++.... +++.... .-.....+++.++ +.+++++..
T Consensus 246 y--~P~~~~e~--~~il~~l~~~Lq~~N-~AVVl~Aik~il~l~~~~--~~~~~~~-~~~rl~~pLv~L~-ss~~eiqyv 316 (746)
T PTZ00429 246 Q--RPSDKESA--ETLLTRVLPRMSHQN-PAVVMGAIKVVANLASRC--SQELIER-CTVRVNTALLTLS-RRDAETQYI 316 (746)
T ss_pred c--CCCCcHHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcCcC--CHHHHHH-HHHHHHHHHHHhh-CCCccHHHH
Confidence 3 22222211 245777788888875 899999999999987531 1110010 0112335566654 456788888
Q ss_pred HHHHHHhhcC
Q 003227 620 AAGALWNLSF 629 (837)
Q Consensus 620 a~~~L~~Ls~ 629 (837)
++..+.-+..
T Consensus 317 aLr~I~~i~~ 326 (746)
T PTZ00429 317 VCKNIHALLV 326 (746)
T ss_pred HHHHHHHHHH
Confidence 8777765544
No 70
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.3e-06 Score=94.34 Aligned_cols=392 Identities=13% Similarity=0.032 Sum_probs=234.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCCh-hHHHHHHHHHHHhccChH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE-GLQSEAAKAIANLSVNAK 460 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~ 460 (837)
..+++.|.++.|.....|+.++..++...-.+ ..+ .+.++.++....++.+ .++..++.+|+.++.+-+
T Consensus 93 ~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~-----n~w-----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~ 162 (859)
T KOG1241|consen 93 NNILRTLGSPEPRRPSSAAQCVAAIACIELPQ-----NQW-----PELIVTLVSNVGEEQASMVKESSLEALGYICEDID 162 (859)
T ss_pred HHHHHHcCCCCCCccchHHHHHHHHHHhhCch-----hhC-----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC
Confidence 45677778788888888888998877544332 111 1223344554444444 488999999999998432
Q ss_pred HHHHHHHcC-CHHHHHHHHhc--CCHHHHHHHHHHHHhhccCccchHHHHhhC----CHHHHHHHHHhhCCCCHHHHHHH
Q 003227 461 VAKAVAEEG-GINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAG----GVKALVDLIFKWSSGGDGVLERA 533 (837)
Q Consensus 461 ~~~~i~~~g-~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g----~i~~L~~lL~~~~~~~~~~~~~a 533 (837)
-....-..+ .+-.+++-.+. ++..+|-.|..+|.+-..-. +..+...+ .+...++.- .+.+.+++..|
T Consensus 163 pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~--~~nF~~E~ern~iMqvvcEat---q~~d~~i~~aa 237 (859)
T KOG1241|consen 163 PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFT--KANFNNEMERNYIMQVVCEAT---QSPDEEIQVAA 237 (859)
T ss_pred HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH--HHhhccHhhhceeeeeeeecc---cCCcHHHHHHH
Confidence 222222222 35566665554 57889999999998765311 00111111 122333443 56888999999
Q ss_pred HHHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC------------C-C--cccchhh
Q 003227 534 AGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS------------N-S--NNSAVGQ 597 (837)
Q Consensus 534 ~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~------------~-~--~~~~~~~ 597 (837)
..+|..+.. .-+....-.....+..-+.-+.+. +++|...++....+++...-+ . | .+...-.
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a 316 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQA 316 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHH
Confidence 999998875 223222222233344445556644 488999999999988763100 0 0 0111111
Q ss_pred ccchHHHHHHHcCCC-------CHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHh-hcCCCCHHHHHHHHHHHH
Q 003227 598 EAGALEALVQLTRSP-------HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQ-SCSNASPGLQERAAGALW 669 (837)
Q Consensus 598 ~~~~i~~L~~lL~~~-------~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~v~~~A~~~L~ 669 (837)
-.+++|.|+++|... +.....+|..+|.-++.. ++...++..+.+.+ +..+++..-++.|+.+++
T Consensus 317 ~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFG 389 (859)
T KOG1241|consen 317 LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFG 389 (859)
T ss_pred HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHH
Confidence 236788888887542 223445555555444432 22334556666654 223489999999999999
Q ss_pred hcccCc-cchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCccc--HHHHHHcCCHHHHHHHHhcCCcHHHHHH
Q 003227 670 GLSVSE-ANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGN--ALRIVEEGGVPALVHLCSSSGSKMARFM 746 (837)
Q Consensus 670 ~l~~~~-~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~--~~~i~~~~~i~~L~~ll~~~~~~~~~~~ 746 (837)
.+-..+ +.+..-...+++|.++.++.+++--++..++|.++.++.+-.. -........++.+++-+++ .|.+...
T Consensus 390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N 467 (859)
T KOG1241|consen 390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASN 467 (859)
T ss_pred hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHH
Confidence 988653 3333344567999999999988899999999999999873221 1122233456677777764 3778899
Q ss_pred HHHHHHHhhCCCCcch--------------hhhccCccCccccc-chhHHHHHHHHHHHHHHHhcCC
Q 003227 747 AALALAYMFDGRMDEF--------------ALIGTSTESTSKCV-SLDGARRMALKHIEAFVLTFSD 798 (837)
Q Consensus 747 a~~aL~~l~~~~~~~~--------------~~i~~~~~~~~~~~-~~~~~~~~a~~~l~~~~l~~~~ 798 (837)
+++++..|++...++. .++..+++.+.... .....+-.|+++|-.++..+++
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 9999999985333111 14444555444322 2222334577777776444443
No 71
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.71 E-value=1.4e-08 Score=124.68 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=16.7
Q ss_pred hCCCcceeeecCcccchHH---HHHcCCCccEEecCCC
Q 003227 101 RCMNLQKLRFRGAESADSI---IHLQARNLRELSGDYC 135 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~c 135 (837)
.+++|+.|+|+++.....+ ....+++|++|++++|
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n 128 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence 4466666666665443211 1113455555555544
No 72
>PTZ00429 beta-adaptin; Provisional
Probab=98.68 E-value=1.7e-05 Score=90.48 Aligned_cols=335 Identities=15% Similarity=0.047 Sum_probs=213.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (837)
+.+++++.+.+.+++.-....+.+.+..+.+. .+ -++..+.+-+.++|+.+|..|++++.++-... .
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel---------al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-i 137 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTARLQPEK---------AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-V 137 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccChHH---------HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-H
Confidence 57778888899999999988888876544332 11 13456777788899999999999998876533 1
Q ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 003227 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (837)
Q Consensus 462 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~ 541 (837)
-+. .++.+.+.+.+.++.||..|+.++.++-..+. +.+.+.+.++.|.+++ .+.++.+..+|+.+|..+.
T Consensus 138 ~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL---~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 138 LEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELL---NDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHh---cCCCccHHHHHHHHHHHHH
Confidence 111 35667788889999999999999999875322 2334556778888988 4689999999999999998
Q ss_pred cCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHH
Q 003227 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAA 621 (837)
Q Consensus 542 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 621 (837)
...... .-...+.+..++..+.+.+ +-.|...+.+|.... +..... ....+..+...|++.++.|...|+
T Consensus 208 ~~~~~~-l~l~~~~~~~Ll~~L~e~~-EW~Qi~IL~lL~~y~------P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Ai 277 (746)
T PTZ00429 208 DYGSEK-IESSNEWVNRLVYHLPECN-EWGQLYILELLAAQR------PSDKES--AETLLTRVLPRMSHQNPAVVMGAI 277 (746)
T ss_pred HhCchh-hHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHhcC------CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 643222 1123345667777776665 666776666664421 111111 246778888889999999999999
Q ss_pred HHHHhhcCCh--hhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-cc-----chh--------------
Q 003227 622 GALWNLSFDD--RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EA-----NCI-------------- 679 (837)
Q Consensus 622 ~~L~~Ls~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~-----~~~-------------- 679 (837)
.++.+++... +....+.. ....+++.++ + .+++++..++..+..+... +. .+.
T Consensus 278 k~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-s---s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~ 352 (746)
T PTZ00429 278 KVVANLASRCSQELIERCTV-RVNTALLTLS-R---RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLE 352 (746)
T ss_pred HHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-C---CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHH
Confidence 9999988652 21111111 1123444443 2 4556666666555444321 10 000
Q ss_pred ------hhhccC----ChHHHHHHhccCCHHHHHHHHHHHHHHcCC-cccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHH
Q 003227 680 ------AIGREG----GVAPLIALARSEAEDVHETAAGALWNLAFN-PGNALRIVEEGGVPALVHLCSSSGSKMARFMAA 748 (837)
Q Consensus 680 ------~l~~~~----~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~-~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~ 748 (837)
.+.... .+..|.....+.+.+++..++.++.+++.. +... ...+..|++++..+. + +...+.
T Consensus 353 KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a-----~~cV~~Ll~ll~~~~-~-~v~e~i 425 (746)
T PTZ00429 353 KLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVA-----PDCANLLLQIVDRRP-E-LLPQVV 425 (746)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCc-h-hHHHHH
Confidence 001111 223344444556777888888888888752 3222 244668888887543 3 344577
Q ss_pred HHHHHhhCCCCcc
Q 003227 749 LALAYMFDGRMDE 761 (837)
Q Consensus 749 ~aL~~l~~~~~~~ 761 (837)
.++.++.+..++.
T Consensus 426 ~vik~IlrkyP~~ 438 (746)
T PTZ00429 426 TAAKDIVRKYPEL 438 (746)
T ss_pred HHHHHHHHHCccH
Confidence 8888887766653
No 73
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.66 E-value=1.8e-08 Score=123.56 Aligned_cols=182 Identities=15% Similarity=0.103 Sum_probs=111.9
Q ss_pred HHHHhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHh
Q 003227 97 SLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (837)
Q Consensus 97 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 176 (837)
.+...+++|++|+++++..........+++|++|++++|. ++.. +......+++|+.|+++ ++ .+.......+ .
T Consensus 112 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~-~~~~-~p~~~~~l~~L~~L~L~--~n-~l~~~~p~~~-~ 185 (968)
T PLN00113 112 DIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM-LSGE-IPNDIGSFSSLKVLDLG--GN-VLVGKIPNSL-T 185 (968)
T ss_pred HHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCc-cccc-CChHHhcCCCCCEEECc--cC-cccccCChhh-h
Confidence 3344567888888888766554444457788888888875 3321 22223567888888885 23 2222111122 3
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~ 254 (837)
.+++|++|++++| .++......+. .+++|++|++++|..... ..+..+++|++|++++|. ++.. +.....++++
T Consensus 186 ~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~ 261 (968)
T PLN00113 186 NLTSLEFLTLASN-QLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGP-IPSSLGNLKN 261 (968)
T ss_pred hCcCCCeeeccCC-CCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce-eccc-cChhHhCCCC
Confidence 4778888888887 44433222333 468888888888743222 457788888888888873 3221 1223456788
Q ss_pred ccEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 255 L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
|+.|++++|.+....-..+ ..+++|+.|++++|.
T Consensus 262 L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNS 295 (968)
T ss_pred CCEEECcCCeeeccCchhH-hhccCcCEEECcCCe
Confidence 8888888876643221222 247788888888886
No 74
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=3e-07 Score=97.24 Aligned_cols=361 Identities=16% Similarity=0.031 Sum_probs=211.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc--Ch
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NA 459 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~ 459 (837)
|.|-+.|.+++--+++.+..+|+.+|.+.....-. + -...+|.++++|.+..+-+|..++|+|...+. -.
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p---~-----LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~ 467 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVP---H-----LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ 467 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhccc---c-----hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc
Confidence 55555556667778999999999988665543110 0 01247888999999999999999999998876 12
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
+.+.+.... .+..+++.+-+.+..||++|+.++..+-... +....+ ...+..|+..+..+...+--+...|.++|
T Consensus 468 ~~~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l--~~IL~~l~~af~kYQ~KNLlILYDAIgtl 544 (885)
T KOG2023|consen 468 DSRDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL--EYILDQLVFAFGKYQKKNLLILYDAIGTL 544 (885)
T ss_pred CChHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH--HHHHHHHHHHHHHHhhcceehHHHHHHHH
Confidence 223333211 3445555555789999999999998876532 221111 11344555555556677778888899988
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHH---hcCCCHHHHHHHHHHHHHHhcCC-C-CCCcccchh-hccchHHHHHHHcC-
Q 003227 538 ANLAADDKCSMEVALAGGVHALVMLA---RSCKFEGVQEQAARALANLAAHG-D-SNSNNSAVG-QEAGALEALVQLTR- 610 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~g~i~~L~~ll---~~~~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~-~~~~~i~~L~~lL~- 610 (837)
..-..+.-++.+-++. .+|+|++-. .+.+ .++ -.-..++..++..- + -.+...... +.-.++...++.+.
T Consensus 545 Adsvg~~Ln~~~Yiqi-LmPPLi~KW~~lsd~D-KdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~ 621 (885)
T KOG2023|consen 545 ADSVGHALNKPAYIQI-LMPPLIEKWELLSDSD-KDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAK 621 (885)
T ss_pred HHHHHHhcCcHHHHHH-hccHHHHHHHhcCccc-chH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHh
Confidence 8877554444332221 356666533 3332 332 33444555544320 0 001000000 01112222122211
Q ss_pred C--------CCHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--ccch
Q 003227 611 S--------PHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--EANC 678 (837)
Q Consensus 611 ~--------~~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~--~~~~ 678 (837)
. ++.+....++..+.-|+.. ......+.+++....+...+.+ .-++||..|...|+.++.. +..+
T Consensus 622 ~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D---~~peVRQS~FALLGDltk~c~~~v~ 698 (885)
T KOG2023|consen 622 VQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD---EVPEVRQSAFALLGDLTKACFEHVI 698 (885)
T ss_pred ccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc---CChHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 1223333455555555554 2234555667778888888887 9999999999999998753 2111
Q ss_pred hhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHHHHHHHHhcCC-cHHHHHHHHHHHHHhh
Q 003227 679 IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALVHLCSSSG-SKMARFMAALALAYMF 755 (837)
Q Consensus 679 ~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~aL~~l~ 755 (837)
..+. ..++-+-.-+....-.+..+|+|+++.++. ..+.+. .-...+..|+..++..+ ...+-+..+.+++.++
T Consensus 699 p~~~--~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~--~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg 774 (885)
T KOG2023|consen 699 PNLA--DFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQ--YVSPVLEDLITIINRQNTPKTLLENTAITIGRLG 774 (885)
T ss_pred chHH--HHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhh--HHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhh
Confidence 1111 112222222333445788899999999986 333332 12234566777776654 3567788999999999
Q ss_pred CCCCcchh
Q 003227 756 DGRMDEFA 763 (837)
Q Consensus 756 ~~~~~~~~ 763 (837)
.-+|+.++
T Consensus 775 ~~~Pe~vA 782 (885)
T KOG2023|consen 775 YICPEEVA 782 (885)
T ss_pred ccCHHhcc
Confidence 98887664
No 75
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=5.9e-05 Score=82.09 Aligned_cols=323 Identities=15% Similarity=0.100 Sum_probs=233.1
Q ss_pred CcHHHHHHHHhcC-ChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhccCcc---
Q 003227 428 GGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEE--- 501 (837)
Q Consensus 428 g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~--- 501 (837)
..|+.|+.-+.+. =.+-|+.|++.|..++. ..|..++. .|++++++.|+. .|+++...++.++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 3466777777663 56789999999998886 33455444 479999999975 589999999999999986542
Q ss_pred --------------chHHHH-hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CCchHHHHhc-CcHHHHHHHH
Q 003227 502 --------------HKGAIA-DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKCSMEVALA-GGVHALVMLA 563 (837)
Q Consensus 502 --------------~~~~l~-~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~-g~i~~L~~ll 563 (837)
..+.++ ..+.|..++..+.. .+=.++..++..+.++... .+.+..+... -+|..++.+|
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~---~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE---FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh---hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 122223 34567788888854 5667999999999999874 5677766655 7899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC---C-HHHHHHHHHHHHhhcCC-hhhHHHHH
Q 003227 564 RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP---H-EGVRQEAAGALWNLSFD-DRNREAIA 638 (837)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~---~-~~~~~~a~~~L~~Ls~~-~~~~~~l~ 638 (837)
.+.. +.++-.++-.|..++.. ++..+..+.=+.+.+.|..++..+ + .-|.+.|+..|.||-.+ ..|+..+.
T Consensus 176 ~Dsr-E~IRNe~iLlL~eL~k~---n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 176 RDSR-EPIRNEAILLLSELVKD---NSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR 251 (970)
T ss_pred hhhh-hhhchhHHHHHHHHHcc---CchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence 9876 77888999999999987 777888888888999999998764 2 35788899999998776 77899999
Q ss_pred HcCCHHHHHHHHhhcCCCCHHH----------HHHHHHHHHhcccC-------ccchhhhhccCChHHHHHHhccC--CH
Q 003227 639 AAGGVEALVVLAQSCSNASPGL----------QERAAGALWGLSVS-------EANCIAIGREGGVAPLIALARSE--AE 699 (837)
Q Consensus 639 ~~g~i~~L~~ll~~~~~~~~~v----------~~~A~~~L~~l~~~-------~~~~~~l~~~~~i~~L~~lL~s~--~~ 699 (837)
+.+.|+.|..+|......+.++ ...|+.++..+... ..+++.+...+++..|..++-++ ..
T Consensus 252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 9999999998886522233111 11355555555532 23456788889999999888554 45
Q ss_pred HHHHHHHHHHHHHcC-CcccHHHHHHcC---------CHHHHH-HHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 700 DVHETAAGALWNLAF-NPGNALRIVEEG---------GVPALV-HLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 700 ~v~~~a~~~L~~l~~-~~~~~~~i~~~~---------~i~~L~-~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
+|+-.+..++.++.. +..++..+.+-. ++-.|. -+..+......|...+-++..+..++.+
T Consensus 332 dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~ 403 (970)
T KOG0946|consen 332 DILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD 403 (970)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence 788888888888876 444555554321 122222 3345556677888888888887766653
No 76
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=4.2e-05 Score=83.55 Aligned_cols=179 Identities=14% Similarity=0.045 Sum_probs=104.7
Q ss_pred ccccccCCCCcchHHHHHHHHHHHHHHHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcc
Q 003227 334 LDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDEN 413 (837)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~l~~l~s~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 413 (837)
.+..++...++.++..+-++..++-+ +..+....++ .-.+.+=|++++.-++-.|..+|++++..+..
T Consensus 73 ieclKLias~~f~dKRiGYLaamLlL-------dE~qdvllLl----tNslknDL~s~nq~vVglAL~alg~i~s~Ema- 140 (866)
T KOG1062|consen 73 IECLKLIASDNFLDKRIGYLAAMLLL-------DERQDLLLLL----TNSLKNDLNSSNQYVVGLALCALGNICSPEMA- 140 (866)
T ss_pred hHHHHHhcCCCchHHHHHHHHHHHHh-------ccchHHHHHH----HHHHHhhccCCCeeehHHHHHHhhccCCHHHh-
Confidence 34455555666666666666555433 2221222211 11223334556666777888888887753221
Q ss_pred cccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Q 003227 414 ASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGG 492 (837)
Q Consensus 414 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~ 492 (837)
....|.+.+++++.++.+++.|+-+...+.. .|+.-+.| ++.--++|.+.+.-|...++..
T Consensus 141 -------------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l 202 (866)
T KOG1062|consen 141 -------------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHL 202 (866)
T ss_pred -------------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHH
Confidence 2346788899999999999999999998877 55544443 3445555666666666666666
Q ss_pred HHhhcc-CccchHHHHhhCCHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHhhcCC
Q 003227 493 LWNLSV-GEEHKGAIADAGGVKALVDLIFKW------------SSGGDGVLERAAGALANLAADD 544 (837)
Q Consensus 493 L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~------------~~~~~~~~~~a~~~L~~l~~~~ 544 (837)
+..++. +++.-..+.+ .++.++..|++. .-.+|-++...++.|+-|..++
T Consensus 203 ~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d 265 (866)
T KOG1062|consen 203 ITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND 265 (866)
T ss_pred HHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC
Confidence 666654 3333333333 455566666541 1234566777777777776643
No 77
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.1e-06 Score=85.96 Aligned_cols=187 Identities=25% Similarity=0.177 Sum_probs=155.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchH
Q 003227 523 SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGAL 602 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i 602 (837)
++.+.+-++.|+.-|..++.+-++...++..|+...++.++++.+ ..+++.|+++|..++.+ ++..+..+.+.+++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qN---NP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQN---NPKSQEQVIELGAL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhc---CHHHHHHHHHcccH
Confidence 456677888899999999999999999999999999999888775 99999999999999997 88899999999999
Q ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchh
Q 003227 603 EALVQLTRSP-HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCI 679 (837)
Q Consensus 603 ~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~ 679 (837)
+.|+..+.+. +..++..|+.|+.++-.+ .+....+...+|...|...+.+ ++.+..++..|+..+..+... ...+.
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~-~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS-NNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999765 556889999999999887 6667888888889999999987 457788888999999999864 33333
Q ss_pred hhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 680 AIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 680 ~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
.+...+....+..+....+.++.+.+..++..+..
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 34444555556677777888899998888877654
No 78
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=6.5e-05 Score=83.74 Aligned_cols=334 Identities=18% Similarity=0.176 Sum_probs=224.4
Q ss_pred HHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhccChHHHHHHHHcCCHH
Q 003227 394 DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSVNAKVAKAVAEEGGIN 472 (837)
Q Consensus 394 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~ 472 (837)
+-...+..+|.++...+++..++... ...--|-.+.+...+.. .++.+|..|+.++..+..+.++-..++..|.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgS---e~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGS---EILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccc---hhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHH
Confidence 34566888999988777754332111 22334667788888877 688999999999999999999999999999888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCC----CchH
Q 003227 473 ILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD----KCSM 548 (837)
Q Consensus 473 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~----~~~~ 548 (837)
.|+++| +.-|..++.++.+|+.|+.+++....-.+.|++..+.+++- .+..++.+..++..++.+..++ ..+-
T Consensus 1817 ~LL~lL-HS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c--~~~~~QqRAqaAeLlaKl~Adkl~GPrV~I 1893 (2235)
T KOG1789|consen 1817 TLLTLL-HSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC--LTNSDQQRAQAAELLAKLQADKLTGPRVTI 1893 (2235)
T ss_pred HHHHHH-hcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh--ccCcHHHHHHHHHHHHHhhhccccCCceee
Confidence 888888 45677889999999999999988888889999999998886 5678889999999999998754 2222
Q ss_pred HHHh--------c--CcHHHHHHHHhcCC-CH------HHHHHHHHHHHHHhcC----CCCCC----c------------
Q 003227 549 EVAL--------A--GGVHALVMLARSCK-FE------GVQEQAARALANLAAH----GDSNS----N------------ 591 (837)
Q Consensus 549 ~l~~--------~--g~i~~L~~ll~~~~-~~------~~~~~a~~~L~~l~~~----~~~~~----~------------ 591 (837)
.+++ . ..-...+.+++... ++ ..+......+..+... .++++ .
T Consensus 1894 TL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~ 1973 (2235)
T KOG1789|consen 1894 TLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEAD 1973 (2235)
T ss_pred ehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhc
Confidence 2111 1 22355555555421 11 2222333333333221 00011 0
Q ss_pred ---------ccchhh------------ccchHHHHHHHcCCCCH--HHHHHHHHHHHhh-cCChhhHHHHHHcCCHHHHH
Q 003227 592 ---------NSAVGQ------------EAGALEALVQLTRSPHE--GVRQEAAGALWNL-SFDDRNREAIAAAGGVEALV 647 (837)
Q Consensus 592 ---------~~~~~~------------~~~~i~~L~~lL~~~~~--~~~~~a~~~L~~L-s~~~~~~~~l~~~g~i~~L~ 647 (837)
++..+. -.+.++.+.+++...++ .....-..++..| ..++.-...+..-|.++.++
T Consensus 1974 ~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~ 2053 (2235)
T KOG1789|consen 1974 KECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFC 2053 (2235)
T ss_pred cCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHH
Confidence 000011 12334555555554432 2222223333333 33454455666679999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC--CcccHHHHHHc
Q 003227 648 VLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF--NPGNALRIVEE 725 (837)
Q Consensus 648 ~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~--~~~~~~~i~~~ 725 (837)
..+.. .+..+-..|..+|-.++.+.-+..++....++..++..++.. ....--|+++|..+.. ..+.....++.
T Consensus 2054 ~Am~~---~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~ 2129 (2235)
T KOG1789|consen 2054 TAMCL---QNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKC 2129 (2235)
T ss_pred HHHHh---cCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 99876 444555789999999999999999999988888888888543 3444478888988875 23334566788
Q ss_pred CCHHHHHHHHhc
Q 003227 726 GGVPALVHLCSS 737 (837)
Q Consensus 726 ~~i~~L~~ll~~ 737 (837)
|.+|.|+++|..
T Consensus 2130 gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2130 GLVPYLLQLLDS 2141 (2235)
T ss_pred CcHHHHHHHhcc
Confidence 999999999975
No 79
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.3e-05 Score=77.67 Aligned_cols=271 Identities=19% Similarity=0.157 Sum_probs=182.2
Q ss_pred HHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHH
Q 003227 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVA 462 (837)
Q Consensus 383 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 462 (837)
.+++++++.+|.++..|...+..+........+ -.+...++.+.++++..++ -..|+.+|.|++.++..+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~--------~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~ 76 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLS--------KYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR 76 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhc--------cchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH
Confidence 578899999999999999888887765111111 1233456788888887766 668999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhh------CCHHHHHHHHHhhCCCC-HHHHHHHHH
Q 003227 463 KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA------GGVKALVDLIFKWSSGG-DGVLERAAG 535 (837)
Q Consensus 463 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~------g~i~~L~~lL~~~~~~~-~~~~~~a~~ 535 (837)
+.+.+. -+..++..+-++...+....+..|.|++..+.....+... .++..++....+ ++.+ ..-..+.+.
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d-~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCD-KSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhC-cccccccchhHHHH
Confidence 998877 6666667766666678888999999999977544333221 344455544433 2333 123346678
Q ss_pred HHHHhhcCCCchHHHHhcCcH--HHHHHHHhcCCCHHHH-HHHHHHHHHHhcCCCCCCcccchhhc--cchHHHHH----
Q 003227 536 ALANLAADDKCSMEVALAGGV--HALVMLARSCKFEGVQ-EQAARALANLAAHGDSNSNNSAVGQE--AGALEALV---- 606 (837)
Q Consensus 536 ~L~~l~~~~~~~~~l~~~g~i--~~L~~ll~~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~i~~L~---- 606 (837)
++.|++..+..|..+.+...+ +.++.+-. .+ ..++ ...++.|.|.++. ..+...+.+ ...++.++
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~-s~vRr~GvagtlkN~cFd----~~~h~~lL~e~~~lLp~iLlPla 228 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-ED-SQVRRGGVAGTLKNCCFD----AKLHEVLLDESINLLPAILLPLA 228 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cc-hhhhccchHHHHHhhhcc----chhHHHHhcchHHHHHHHHhhcC
Confidence 899999988888877766532 33333333 22 4444 4788999999985 223333332 22333332
Q ss_pred -----------------HHcC-----CCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH
Q 003227 607 -----------------QLTR-----SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERA 664 (837)
Q Consensus 607 -----------------~lL~-----~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A 664 (837)
++|. .++++++..-+.+|..|+.....|+.+...|+.+.+-.+=+. .+++++++..
T Consensus 229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~--e~ded~~~ac 306 (353)
T KOG2973|consen 229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKW--EEDEDIREAC 306 (353)
T ss_pred CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcC--CCcHHHHHHH
Confidence 3332 247899999999999999999999999888777666555443 5778888766
Q ss_pred HHHHHhccc
Q 003227 665 AGALWGLSV 673 (837)
Q Consensus 665 ~~~L~~l~~ 673 (837)
-.+..-+..
T Consensus 307 e~vvq~Lv~ 315 (353)
T KOG2973|consen 307 EQVVQMLVR 315 (353)
T ss_pred HHHHHHHHh
Confidence 665555443
No 80
>PF05536 Neurochondrin: Neurochondrin
Probab=98.55 E-value=7e-05 Score=83.24 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=124.3
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-------CChhHHHHHHHHH
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-------WREGLQSEAAKAI 452 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L 452 (837)
.+..-+++|+..+.+-+..+...+.+++..++.. ...+..+.++=+.+.+-++|++ +....+..|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~----~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDED----SQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhh----HHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 3567788898888677777778888888765543 2334467788888999999988 3456788899999
Q ss_pred HHhccChHHHHHHHHcCCHHHHHHHHhcCCH-HHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHH
Q 003227 453 ANLSVNAKVAKAVAEEGGINILAVLARSMNR-LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (837)
Q Consensus 453 ~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~ 531 (837)
..++.+++....---.+-||.+++.+...+. .+...+..+|..++.+++.++.+.+.|+++.|++.+.+ .+...+
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E 157 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QSFQME 157 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----CcchHH
Confidence 9999988765333333459999999988766 89999999999999999999999999999999999963 555678
Q ss_pred HHHHHHHHhhcC
Q 003227 532 RAAGALANLAAD 543 (837)
Q Consensus 532 ~a~~~L~~l~~~ 543 (837)
.|+.++.++...
T Consensus 158 ~Al~lL~~Lls~ 169 (543)
T PF05536_consen 158 IALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHHHh
Confidence 888888888764
No 81
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.52 E-value=8e-05 Score=79.19 Aligned_cols=248 Identities=26% Similarity=0.233 Sum_probs=150.9
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 458 (837)
..++.+++.+.+.+..++..|+..++. +....+++.+..++.+.++.+|..|+.+|+.+...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~------------------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGE------------------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGDP 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhh------------------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh
Confidence 346789999988899999999999875 44456788999999999999999999988877765
Q ss_pred hHHHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCH----------
Q 003227 459 AKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGD---------- 527 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~---------- 527 (837)
. .++.++..+. +++..++..+..+|..+-... ++..++..+.. ...
T Consensus 105 ~----------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~---~~~~~a~~~~~~~ 161 (335)
T COG1413 105 E----------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQD---EDSGSAAAALDAA 161 (335)
T ss_pred h----------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhcc---chhhhhhhhccch
Confidence 4 6889999998 589999999999999988532 57888888853 221
Q ss_pred --HHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 003227 528 --GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (837)
Q Consensus 528 --~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L 605 (837)
.++..+...|..+- ....++.+...+.+.. ..++..|+.+|..+.... ....+.+
T Consensus 162 ~~~~r~~a~~~l~~~~----------~~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~------------~~~~~~l 218 (335)
T COG1413 162 LLDVRAAAAEALGELG----------DPEAIPLLIELLEDED-ADVRRAAASALGQLGSEN------------VEAADLL 218 (335)
T ss_pred HHHHHHHHHHHHHHcC----------ChhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch------------hhHHHHH
Confidence 12333333332221 1223455555555543 455556666655555420 2334555
Q ss_pred HHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccC
Q 003227 606 VQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREG 685 (837)
Q Consensus 606 ~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~ 685 (837)
...+.+++..++..++.+|..+... ..+..+...+.. .+..++..+...+.. .....
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~---~~~~~~~~~~~~~~~----------~~~~~ 275 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIGDE----------EAVDALAKALED---EDVILALLAAAALGA----------LDLAE 275 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhc---cchHHHHHHHHHhcc----------cCchh
Confidence 5555555555665555555544322 134444455544 444444444444431 11111
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 686 GVAPLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 686 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
....+...+.+....++..+..++....
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 276 AALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred hHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 2333444444445555555555554444
No 82
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.49 E-value=8.6e-08 Score=100.36 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=41.4
Q ss_pred CCCccEEEecCCC--CCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccc
Q 003227 204 CPNLTDIGFLDCL--NVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (837)
Q Consensus 204 ~~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 281 (837)
+|+|+.|.+..|. .++|.+|..|.++++|+|+.|. ++.-.-. ..-++..|+.|+|++|.|.--.+.... -|++|+
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g-~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~ 320 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEG-WLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLK 320 (873)
T ss_pred chhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcc-cccccchhhhhccchhhhheeecchhh-hcccce
Confidence 3444555444331 2344455566667777766652 2111101 112356666666666644322222221 266777
Q ss_pred cccccccccccc
Q 003227 282 VLCALNCPVLEE 293 (837)
Q Consensus 282 ~l~l~~c~~i~~ 293 (837)
.|+|+++. |+.
T Consensus 321 ~LdLs~N~-i~~ 331 (873)
T KOG4194|consen 321 ELDLSSNR-ITR 331 (873)
T ss_pred eEeccccc-ccc
Confidence 77776654 443
No 83
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=7e-06 Score=85.74 Aligned_cols=325 Identities=14% Similarity=0.035 Sum_probs=210.9
Q ss_pred HHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--cc
Q 003227 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EH 502 (837)
Q Consensus 425 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~ 502 (837)
.-++.+++++..+.+.|..++..|++.|+|++.-...............+.++..+.+..++. ++..+-.+..+- +-
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccc
Confidence 456788999999999999999999999999986221111111122345566666666766663 444554444321 11
Q ss_pred hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003227 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (837)
Q Consensus 503 ~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (837)
...+--.+.+|.|-+.+ ...++.++...+.-|..|-..++..--=.-...++-|+.+|.+.+ ++++..+-.+|.+.
T Consensus 160 ~~tFsL~~~ipLL~eri---y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERI---YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEF 235 (675)
T ss_pred ccccCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHH
Confidence 11222223455555555 346788888888888777766654321111245677888888876 78886666555554
Q ss_pred hcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHH
Q 003227 583 AAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQE 662 (837)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~ 662 (837)
-..=...+.. +.-...++.++.-+.++++.++..|+..+.....-.+......-.|.+..+++++.+ ++...+++
T Consensus 236 L~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~--~e~~~i~~ 310 (675)
T KOG0212|consen 236 LAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSD--TEEMSIKE 310 (675)
T ss_pred HHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCC--CccccHHH
Confidence 3211112211 122456788899999999999999998888877765555555556777777777765 22223555
Q ss_pred HHHHH---HHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCC
Q 003227 663 RAAGA---LWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSG 739 (837)
Q Consensus 663 ~A~~~---L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~ 739 (837)
.|..+ |..+...+...+.+.-...++.+...+.++..+.+..++.-+..+-....++-........+.|+.-+.+..
T Consensus 311 ~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~s 390 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRS 390 (675)
T ss_pred HHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCch
Confidence 44433 344444444443333334677788888899999999999988888776666655556677889999998764
Q ss_pred cHHHHHHHHHHHHHhhCCCCc
Q 003227 740 SKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 740 ~~~~~~~a~~aL~~l~~~~~~ 760 (837)
+.+-..+...++.++.+..+
T Consensus 391 -d~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 391 -DEVVLLALSLLASICSSSNS 410 (675)
T ss_pred -hHHHHHHHHHHHHHhcCccc
Confidence 77889999999999887653
No 84
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.45 E-value=4.1e-05 Score=81.39 Aligned_cols=254 Identities=26% Similarity=0.245 Sum_probs=189.5
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHH
Q 003227 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (837)
Q Consensus 428 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 507 (837)
..++.++..+.+.+..++..|+..++.+.... .++.+..++.+.++.++..|+.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~----------av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEE----------AVPLLRELLSDEDPRVRDAAADALGELGDP-------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHH----------HHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence 46778999999999999999999976665444 689999999999999999999988888743
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCC---------CH--HHHHHHH
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK---------FE--GVQEQAA 576 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~---------~~--~~~~~a~ 576 (837)
..++.++..+.. +.+..++..+.++|+.+-. ..++..++..+.+.. .+ .++..+.
T Consensus 105 --~a~~~li~~l~~--d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 105 --EAVPPLVELLEN--DENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred --hHHHHHHHHHHc--CCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 278899999963 6888999999999988752 234667777777643 11 3566666
Q ss_pred HHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCC
Q 003227 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNA 656 (837)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~ 656 (837)
.++..+.. ...++.+...+.+.+..++..|+.+|..+..+. ......+...+.+ +
T Consensus 171 ~~l~~~~~--------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~---~ 225 (335)
T COG1413 171 EALGELGD--------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSD---E 225 (335)
T ss_pred HHHHHcCC--------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcC---C
Confidence 66666553 466788999999999999999999999887654 2345677777776 9
Q ss_pred CHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHh
Q 003227 657 SPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCS 736 (837)
Q Consensus 657 ~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~ 736 (837)
+..++..++.+|..+ .....++.+...+.+.+..+...+..++...- -......+...+.
T Consensus 226 ~~~vr~~~~~~l~~~----------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~ 285 (335)
T COG1413 226 SLEVRKAALLALGEI----------GDEEAVDALAKALEDEDVILALLAAAALGALD----------LAEAALPLLLLLI 285 (335)
T ss_pred CHHHHHHHHHHhccc----------CcchhHHHHHHHHhccchHHHHHHHHHhcccC----------chhhHHHHHHHhh
Confidence 999999999999873 33446788888898888887777766665211 1123445555555
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCC
Q 003227 737 SSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 737 ~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
+. ...++..++.++........
T Consensus 286 ~~-~~~~~~~~~~~l~~~~~~~~ 307 (335)
T COG1413 286 DE-ANAVRLEAALALGQIGQEKA 307 (335)
T ss_pred cc-hhhHHHHHHHHHHhhcccch
Confidence 44 36678888888887766543
No 85
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.44 E-value=1.7e-06 Score=72.71 Aligned_cols=149 Identities=21% Similarity=0.145 Sum_probs=118.1
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhh
Q 003227 554 GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN 633 (837)
Q Consensus 554 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 633 (837)
+.++.|+.-.+...+.+.++....-|.|.+. .+.+...+.+..+++.++..+..+++.+.+.+++.|+|++.+..+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY----DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY----DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc----CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 5678888888888789999999999999998 678889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCc-cchhhhhccCChHHHHHHhccCCHHHHHHHHHHH
Q 003227 634 REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE-ANCIAIGREGGVAPLIALARSEAEDVHETAAGAL 709 (837)
Q Consensus 634 ~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~-~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L 709 (837)
...|.+.++++..+..+.+ +...+...|+.++..++... ..+..+.....+..+.+.-.+.+.+.+.-|..+|
T Consensus 92 ~~~I~ea~g~plii~~lss---p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl 165 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSS---PPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFL 165 (173)
T ss_pred HHHHHHhcCCceEEeecCC---ChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999987 88888889999999998653 3344444433333333322234444444444444
No 86
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.42 E-value=3.9e-07 Score=112.16 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=38.2
Q ss_pred CCCccEEEecCCCCCChHH-hhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccc
Q 003227 204 CPNLTDIGFLDCLNVDEVA-LGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~ 282 (837)
+++|++|++++|..++.-. ...+++|++|++++|..+. .+....++|+.|+|++|.+.. +-.-+..+++|+.
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-----~~p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~ 873 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-----TFPDISTNISDLNLSRTGIEE--VPWWIEKFSNLSF 873 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-----cccccccccCEeECCCCCCcc--ChHHHhcCCCCCE
Confidence 3444455544443333210 0134445555555544331 111223456666666655431 1111234667777
Q ss_pred ccccccccccc
Q 003227 283 LCALNCPVLEE 293 (837)
Q Consensus 283 l~l~~c~~i~~ 293 (837)
|++.+|+.++.
T Consensus 874 L~L~~C~~L~~ 884 (1153)
T PLN03210 874 LDMNGCNNLQR 884 (1153)
T ss_pred EECCCCCCcCc
Confidence 77777766654
No 87
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=8.5e-05 Score=79.60 Aligned_cols=348 Identities=18% Similarity=0.133 Sum_probs=198.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChH
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (837)
+..+++-+..+.+++|.....+|..+....... ......+.+.+++...+...+..|+..++.+..+.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-----------~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~- 165 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-----------SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL- 165 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-----------CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-
Confidence 478888889999999999988888755332221 12234567888888888899999999999887644
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCHHHHHH-HH-----------------------HHHHhhcc-CccchHHHH--------
Q 003227 461 VAKAVAEEGGINILAVLARSMNRLVAEE-AA-----------------------GGLWNLSV-GEEHKGAIA-------- 507 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~-a~-----------------------~~L~~l~~-~~~~~~~l~-------- 507 (837)
.-..+.+.+.+..+...+++.....++. +. .+|.+... .+.+|+.-.
T Consensus 166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 2233444555666666665543332221 11 12222221 111111110
Q ss_pred --hhCCHHHHH-HHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 508 --DAGGVKALV-DLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 508 --~~g~i~~L~-~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
...+++.++ .++.+........+..++..++.++.....+-.......+|.+.+.|-+.. ++++..+..+|..++.
T Consensus 246 ~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~-~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 246 CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTK-PEVRKAGIETLLKFGS 324 (569)
T ss_pred hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCC-HHHHHHHHHHHHHHHH
Confidence 112222211 111111112334555666667766666555555556678888888888776 8999999999999987
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhh-cCCCCHHHHHH
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQS-CSNASPGLQER 663 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~v~~~ 663 (837)
. .++..+ ...+|.|+..+.++...+.+. ...|..-+.-. .++.-.+..++.++.. ....+..++..
T Consensus 325 v----idN~dI---~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~-----~V~~psLalmvpiL~R~l~eRst~~kr~ 391 (569)
T KOG1242|consen 325 V----IDNPDI---QKIIPTLLDALADPSCYTPEC-LDSLGATTFVA-----EVDAPSLALMVPILKRGLAERSTSIKRK 391 (569)
T ss_pred h----hccHHH---HHHHHHHHHHhcCcccchHHH-HHhhcceeeee-----eecchhHHHHHHHHHHHHhhccchhhhh
Confidence 3 333332 356788888887776444332 22222111100 0112234444444432 11267778899
Q ss_pred HHHHHHhcccCccchhhhhc--cCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcH
Q 003227 664 AAGALWGLSVSEANCIAIGR--EGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSK 741 (837)
Q Consensus 664 A~~~L~~l~~~~~~~~~l~~--~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~ 741 (837)
++.+..|++.-.+....+.. ...+|.+-..+.+..|++|..++.+|..+-..-..... .+.+|.+.+.+.+....
T Consensus 392 t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~ 468 (569)
T KOG1242|consen 392 TAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSL 468 (569)
T ss_pred HHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhh
Confidence 99999999964333333322 12344454555667899999999999877653333222 45566777776655444
Q ss_pred HHHHHHHHHHHHhhCC
Q 003227 742 MARFMAALALAYMFDG 757 (837)
Q Consensus 742 ~~~~~a~~aL~~l~~~ 757 (837)
.-+..++..|.....+
T Consensus 469 ~~~~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 469 VDRSGAAQDLSEVLAG 484 (569)
T ss_pred hhhHHHhhhHHHHHhc
Confidence 4455555555555443
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.39 E-value=0.00014 Score=76.48 Aligned_cols=248 Identities=16% Similarity=0.087 Sum_probs=176.9
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
+++.+..+.-....+.+..++-+++.+++..+.++++.+..+++.-..+.+.+.--.++.-|.. ...+..=+++|+..+
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~-~~~~~~ER~QALkli 92 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDR-DNKNDVEREQALKLI 92 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcc-cCCChHHHHHHHHHH
Confidence 3334444333333444444444555999999999999999998888888888765566666754 344555678999999
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
+.+..-+..... ...|.+..++...++.+ +..+..|..+|..++.. ++ ..+...|++..|++.+.++..++.
T Consensus 93 R~~l~~~~~~~~-~~~~vvralvaiae~~~-D~lr~~cletL~El~l~---~P---~lv~~~gG~~~L~~~l~d~~~~~~ 164 (371)
T PF14664_consen 93 RAFLEIKKGPKE-IPRGVVRALVAIAEHED-DRLRRICLETLCELALL---NP---ELVAECGGIRVLLRALIDGSFSIS 164 (371)
T ss_pred HHHHHhcCCccc-CCHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHhh---CH---HHHHHcCCHHHHHHHHHhccHhHH
Confidence 888764332222 24477899999999875 78899999999999985 33 667789999999999888766788
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhc----CCCCH--HHHHHHHHHHHhcccCccchhhhhc--cCChHH
Q 003227 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSC----SNASP--GLQERAAGALWGLSVSEANCIAIGR--EGGVAP 689 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~----~~~~~--~v~~~A~~~L~~l~~~~~~~~~l~~--~~~i~~ 689 (837)
+..+.++..+-.++..|+++...--++.++.-+.+. ...+. +.-..+..++..+-.+..+--.+.. ..++..
T Consensus 165 ~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lks 244 (371)
T PF14664_consen 165 ESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKS 244 (371)
T ss_pred HHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHH
Confidence 889999999999999998887765677777666552 11222 2334455555555444333222222 258899
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 690 LIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 690 L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
|++.|+.++++++......+..+..
T Consensus 245 Lv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 245 LVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998763
No 89
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.34 E-value=5.3e-06 Score=69.85 Aligned_cols=150 Identities=20% Similarity=0.164 Sum_probs=118.9
Q ss_pred chHHHHHHHcC-CCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccch
Q 003227 600 GALEALVQLTR-SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANC 678 (837)
Q Consensus 600 ~~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~ 678 (837)
+.+..|+.-.. ..+.+.++....-|+|.+.++-|-..+.+..++..++..+.. .+..+.+.+.+.|+|+|.++.+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e---~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE---QNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc---ccHHHHHHhHHHHHhhccChHHH
Confidence 44555554443 358899999999999999999999999999999999999987 99999999999999999999999
Q ss_pred hhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCC-cccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 003227 679 IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN-PGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAY 753 (837)
Q Consensus 679 ~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~-~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~ 753 (837)
+-|.+.++++.++..+.|+.+.+...|+.++..|+.. ...+..+....++..+.+.-.+. +...+..|...|..
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESK-SHDERNLASAFLDK 167 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999874 44566666655555444443222 23345555555443
No 90
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00014 Score=74.11 Aligned_cols=263 Identities=13% Similarity=0.100 Sum_probs=198.0
Q ss_pred hhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccc--hhhHHHHHHhCcHHHHHHHHhcCC
Q 003227 364 TAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASID--CGRAEAVMKDGGIRLLLDLAKSWR 441 (837)
Q Consensus 364 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~ 441 (837)
....-|.-.+.|+..+||+.|+++|.+.+.++.......|..|+..+.-.-+.+ .....++++.+.++.|++.++.-|
T Consensus 110 vlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLd 189 (536)
T KOG2734|consen 110 VLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLD 189 (536)
T ss_pred hhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 335566666688899999999999999999999999999998886654332222 245677888999999999987644
Q ss_pred hhH------HHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhccCc-cchHHHHhhCC
Q 003227 442 EGL------QSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGG 511 (837)
Q Consensus 442 ~~~------~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~ 511 (837)
+.+ ...++..+-|+.. +++.+..+++.|-+..|+.-+.. +......+|..+|.-+..+. +++..+....|
T Consensus 190 Esvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G 269 (536)
T KOG2734|consen 190 ESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG 269 (536)
T ss_pred hcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc
Confidence 433 4567888888887 88999999999878888775543 45566778889998888765 58999999999
Q ss_pred HHHHHHHHHhhCCC------CHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 512 VKALVDLIFKWSSG------GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 512 i~~L~~lL~~~~~~------~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
+..+++-+.-+... ..+..++...+|+.+...+.++..+....+++...-+++.. ...+..+.++|-....+
T Consensus 270 iD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K--k~sr~SalkvLd~am~g 347 (536)
T KOG2734|consen 270 IDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK--KVSRGSALKVLDHAMFG 347 (536)
T ss_pred HHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--HHhhhhHHHHHHHHHhC
Confidence 99998877433222 34667778888888888999999999999998777777763 45677899999998876
Q ss_pred CCCCCcccchhhccchHHHHHHHcC-C---------CCHHHHHHHHHHHHhhcC
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTR-S---------PHEGVRQEAAGALWNLSF 629 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~-~---------~~~~~~~~a~~~L~~Ls~ 629 (837)
++ ...++..+.+..++..+..+.- . ...+.-++.+..|+.+-.
T Consensus 348 ~~-gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 348 PE-GTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred CC-chHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 43 4467777788888887776632 2 234566677777776644
No 91
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.0002 Score=73.01 Aligned_cols=260 Identities=16% Similarity=0.152 Sum_probs=193.9
Q ss_pred HHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc------c----chHHHHhhCCHHHHHH
Q 003227 448 AAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE------E----HKGAIADAGGVKALVD 517 (837)
Q Consensus 448 a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~------~----~~~~l~~~g~i~~L~~ 517 (837)
...-+.-++.-|+.-..+++.++++.++++|.+.+.++....+..|..++..+ + .-..+++.+.++.|+.
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 44556667888999999999999999999999999999999999999998732 2 2355667788999998
Q ss_pred HHHhhCCCC---HHHHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCCcc
Q 003227 518 LIFKWSSGG---DGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSC-KFEGVQEQAARALANLAAHGDSNSNN 592 (837)
Q Consensus 518 lL~~~~~~~---~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (837)
-+.++.... ..-...++.++-|+.. .++....+++.|.+..|+.-+... ....-...|..++.-+... +.++
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~---s~e~ 260 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN---SDEN 260 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc---Cchh
Confidence 887632222 2234567788888887 678888889998888888755433 3345567788888888775 4446
Q ss_pred cchhhccchHHHHHHHcCC---C------CHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHH
Q 003227 593 SAVGQEAGALEALVQLTRS---P------HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQER 663 (837)
Q Consensus 593 ~~~~~~~~~i~~L~~lL~~---~------~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~ 663 (837)
+.......++..+++-+.- . ..+..++.-.+|+.+-..+.++..+....+++...-+++ .....+..
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr----~Kk~sr~S 336 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR----EKKVSRGS 336 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH----HHHHhhhh
Confidence 7777788889988877632 1 346777888888988889999999999999988777776 34567778
Q ss_pred HHHHHHhcccCc---cchhhhhccCChHHHHHHh-cc---------CCHHHHHHHHHHHHHHcC
Q 003227 664 AAGALWGLSVSE---ANCIAIGREGGVAPLIALA-RS---------EAEDVHETAAGALWNLAF 714 (837)
Q Consensus 664 A~~~L~~l~~~~---~~~~~l~~~~~i~~L~~lL-~s---------~~~~v~~~a~~~L~~l~~ 714 (837)
|.++|-....++ +++..+++.+|+..+..+. +. ...+.-+..+..|+.+-.
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 999999888764 5677888888888876554 22 124566666666666644
No 92
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00024 Score=79.42 Aligned_cols=311 Identities=16% Similarity=0.101 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHhcc-ChHHHHHHHH----cCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHH
Q 003227 444 LQSEAAKAIANLSV-NAKVAKAVAE----EGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (837)
Q Consensus 444 ~~~~a~~~L~~l~~-~~~~~~~i~~----~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ 517 (837)
-...++.+|.|+.. +|+....+.. .|-.+.+...++. .++.++..|+..+..++.+.++...++..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34579999999877 7776655543 3457777777776 6889999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 003227 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (837)
Q Consensus 518 lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 597 (837)
+|. .-+..++.++.+|..|+++++...+-.+.|++..+..++...+.+..+..++..+..+....-..+.....++
T Consensus 1821 lLH----S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1821 LLH----SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHh----cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 994 4577999999999999999999888889999999999888777788899999999999875433333332222
Q ss_pred c----------cchHHHHHHHcCC--CC------HHHHHHHHHHHHhhcCC--------h--------------------
Q 003227 598 E----------AGALEALVQLTRS--PH------EGVRQEAAGALWNLSFD--------D-------------------- 631 (837)
Q Consensus 598 ~----------~~~i~~L~~lL~~--~~------~~~~~~a~~~L~~Ls~~--------~-------------------- 631 (837)
. .+..+..++.+.. ++ +..+...-..+..++.. +
T Consensus 1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence 0 0112333444332 11 22222222223222110 0
Q ss_pred -----hhHHHHHHc------------CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHh
Q 003227 632 -----RNREAIAAA------------GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA 694 (837)
Q Consensus 632 -----~~~~~l~~~------------g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL 694 (837)
-+|..+.+. |.++.+.+++...+......-........-+...|.....+...|.+|.++..+
T Consensus 1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence 012222222 234555566654222222222222222222334677777888889999999998
Q ss_pred ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 695 RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 695 ~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
...+..+-..|+..|..|+.+.-+...|.+...+..++..+... +..--.|+++|..+.....+
T Consensus 2057 ~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~ 2120 (2235)
T KOG1789|consen 2057 CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTG 2120 (2235)
T ss_pred HhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHH
Confidence 66666666889999999999999999999988888888888754 33445788888877664443
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.27 E-value=0.0007 Score=71.40 Aligned_cols=305 Identities=16% Similarity=0.127 Sum_probs=200.8
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC--ChhHHHHHHHHHHHhccC
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVN 458 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~ 458 (837)
.+.+..++-+++.+++..|..++..+..+ +...+.+.+.+.--.++..|..+ +..-|.+|++.+..+..-
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d--------~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISD--------EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI 98 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcC--------HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh
Confidence 35555555555589999999999886643 33456777777777778888764 455678999999888764
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
++.... .-.|.+..++.+..++++..+..|..+|..++-. +-+.+...||+..|++.+.. +..++.+..+.++.
T Consensus 99 ~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d---~~~~~~~~l~~~lL 172 (371)
T PF14664_consen 99 KKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALID---GSFSISESLLDTLL 172 (371)
T ss_pred cCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHh---ccHhHHHHHHHHHH
Confidence 222222 2345688999999999999999999999999963 34677899999999999953 55558889999999
Q ss_pred HhhcCCCchHHHHhcCcHHHHHHHHhcC------CCH--HHHHHHHHHHHHHhcCCCCCCcccchhhcc--chHHHHHHH
Q 003227 539 NLAADDKCSMEVALAGGVHALVMLARSC------KFE--GVQEQAARALANLAAHGDSNSNNSAVGQEA--GALEALVQL 608 (837)
Q Consensus 539 ~l~~~~~~~~~l~~~g~i~~L~~ll~~~------~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~i~~L~~l 608 (837)
++...+..|..+...--+..++.-+.+. ++. +....+..++..+-. ++..-..+... .+++.|+..
T Consensus 173 ~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr----sW~GLl~l~~~~~~~lksLv~~ 248 (371)
T PF14664_consen 173 YLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR----SWPGLLYLSMNDFRGLKSLVDS 248 (371)
T ss_pred HHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh----cCCceeeeecCCchHHHHHHHH
Confidence 9999999988776544455555544332 122 345567777777765 45444444433 589999999
Q ss_pred cCCCCHHHHHHHHHHHHhhcCChh--------hHHHHHHcCCHHHHHHHH----------hhcCCCCHHHHH-HHHHHHH
Q 003227 609 TRSPHEGVRQEAAGALWNLSFDDR--------NREAIAAAGGVEALVVLA----------QSCSNASPGLQE-RAAGALW 669 (837)
Q Consensus 609 L~~~~~~~~~~a~~~L~~Ls~~~~--------~~~~l~~~g~i~~L~~ll----------~~~~~~~~~v~~-~A~~~L~ 669 (837)
|..+++++++.....+..+-.-+. ....+...|-+..--++- .........+.. ..+-.+
T Consensus 249 L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll- 327 (371)
T PF14664_consen 249 LRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLL- 327 (371)
T ss_pred HcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHH-
Confidence 999999999999999887644211 011111222221001111 000000111111 111111
Q ss_pred hcccCccchhhhhccCChHHHHHHhccC-CHHHHHHHHHHHHHHc
Q 003227 670 GLSVSEANCIAIGREGGVAPLIALARSE-AEDVHETAAGALWNLA 713 (837)
Q Consensus 670 ~l~~~~~~~~~l~~~~~i~~L~~lL~s~-~~~v~~~a~~~L~~l~ 713 (837)
..+.+.|.++.|++++.+. ++.+...|...|..+-
T Consensus 328 ---------~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 328 ---------AILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred ---------HHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 2467889999999999776 7888888888877653
No 94
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00014 Score=79.08 Aligned_cols=354 Identities=14% Similarity=0.023 Sum_probs=215.4
Q ss_pred HHHHHhhhcCCHH-HHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc--CChhHHHHHHHHHHHhcc-
Q 003227 382 GLLLSLMQSTQED-VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLSV- 457 (837)
Q Consensus 382 ~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~- 457 (837)
+.++.....+.+. +++.+..+|+.+|.+-+ |+.. .-....++-.++.-++. ++..+|..|+.+|.+--.
T Consensus 132 ~~lv~nv~~~~~~~~k~~slealGyice~i~------pevl-~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef 204 (859)
T KOG1241|consen 132 VTLVSNVGEEQASMVKESSLEALGYICEDID------PEVL-EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEF 204 (859)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHccCC------HHHH-HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHH
Confidence 5566666555544 78889999999885433 3311 11223345566666655 578899999999987432
Q ss_pred ------ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-cchHHHHhhCCHHHHHHHHHhhCCCCHHHH
Q 003227 458 ------NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (837)
Q Consensus 458 ------~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~ 530 (837)
++..|.. .++..++.-++++.+++.+|..+|..|..-- +.-...........-+..+ .+.++++.
T Consensus 205 ~~~nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am---ks~~deVa 276 (859)
T KOG1241|consen 205 TKANFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM---KSDNDEVA 276 (859)
T ss_pred HHHhhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCcHHHH
Confidence 1222222 2455556667889999999999999998632 2222222222333334444 46888898
Q ss_pred HHHHHHHHHhhcCC-Cc---------------hHHHHh---cCcHHHHHHHHhcC------CCHHHHHHHHHHHHHHhcC
Q 003227 531 ERAAGALANLAADD-KC---------------SMEVAL---AGGVHALVMLARSC------KFEGVQEQAARALANLAAH 585 (837)
Q Consensus 531 ~~a~~~L~~l~~~~-~~---------------~~~l~~---~g~i~~L~~ll~~~------~~~~~~~~a~~~L~~l~~~ 585 (837)
..+..-=.+++..+ +. ...+.+ .+.+|.|+++|... ++-....+|..+|.-.+..
T Consensus 277 lQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~ 356 (859)
T KOG1241|consen 277 LQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC 356 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH
Confidence 88887767666421 10 001111 25678888877642 2223445566666665553
Q ss_pred CCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh-hhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD-RNREAIAAAGGVEALVVLAQSCSNASPGLQERA 664 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A 664 (837)
.. ..+. ..+++.+-+-+++++..-++.|+.+++.+-..+ +.+-.-...++++.++.++.+ ++--++..+
T Consensus 357 ~~------D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D---~sl~VkdTa 426 (859)
T KOG1241|consen 357 VG------DDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD---PSLWVKDTA 426 (859)
T ss_pred hc------ccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC---chhhhcchH
Confidence 11 0111 144455555677889999999999999987764 334444556799999999987 888899999
Q ss_pred HHHHHhcccC-ccch-hhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCC-----ccc-HHHHHHcCCHHHHHH-HH
Q 003227 665 AGALWGLSVS-EANC-IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN-----PGN-ALRIVEEGGVPALVH-LC 735 (837)
Q Consensus 665 ~~~L~~l~~~-~~~~-~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~-----~~~-~~~i~~~~~i~~L~~-ll 735 (837)
+|.|+.++.. ++.+ ......+.++.++.-|. +.|.+..+++|++.+|+.. +.+ +..... ...+.++. ++
T Consensus 427 AwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll 504 (859)
T KOG1241|consen 427 AWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLL 504 (859)
T ss_pred HHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHH
Confidence 9999999864 3221 11122233444444443 5799999999999999841 111 100111 12233332 22
Q ss_pred h-----cCCcHHHHHHHHHHHHHhhCCCCcch
Q 003227 736 S-----SSGSKMARFMAALALAYMFDGRMDEF 762 (837)
Q Consensus 736 ~-----~~~~~~~~~~a~~aL~~l~~~~~~~~ 762 (837)
. +++....|..|-.||..+....++.+
T Consensus 505 ~~tdr~dgnqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 505 KVTDRADGNQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred hhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence 2 23456799999999999999888554
No 95
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.00011 Score=71.67 Aligned_cols=276 Identities=16% Similarity=0.088 Sum_probs=192.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhccCcc---c--hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch
Q 003227 473 ILAVLARSMNRLVAEEAAGGLWNLSVGEE---H--KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547 (837)
Q Consensus 473 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~---~--~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 547 (837)
.|-.-|..++..++..++..+..+..+.+ . ...+++.+..+.++..+ ..++.++...|...+..++.-+...
T Consensus 86 dLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI---ggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 86 DLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI---GGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred HHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH---cCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 33344556788888889988888876432 2 23345778889999999 4588899999999999999988888
Q ss_pred HHHHhcCcHHHH--HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC-CCHHHHHHHHHHH
Q 003227 548 MEVALAGGVHAL--VMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS-PHEGVRQEAAGAL 624 (837)
Q Consensus 548 ~~l~~~g~i~~L--~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L 624 (837)
..+.+....+.+ ..+....+ .-++..+...+..+.+. +++........|.+..|..=++. +|.-++..++...
T Consensus 163 eaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSi---SpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSI---SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhc---CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 888777665433 33333333 45667777777777665 44445555677888888777766 6777889999999
Q ss_pred HhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCcc----chhhhhcc--CChHHHHHHhccCC
Q 003227 625 WNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA----NCIAIGRE--GGVAPLIALARSEA 698 (837)
Q Consensus 625 ~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~----~~~~l~~~--~~i~~L~~lL~s~~ 698 (837)
..|+.....++.+.+.|.|+.+..++.. .+.+|.-+..++.....+-.... .-+++.+. -+++.-.+++...+
T Consensus 239 teLaeteHgreflaQeglIdlicnIIsG-adsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnD 317 (524)
T KOG4413|consen 239 TELAETEHGREFLAQEGLIDLICNIISG-ADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMND 317 (524)
T ss_pred HHHHHHhhhhhhcchhhHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCC
Confidence 9999999999999999999999999876 44556666656655555443211 11122221 23444556778899
Q ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHcCC--HHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 699 EDVHETAAGALWNLAFNPGNALRIVEEGG--VPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 699 ~~v~~~a~~~L~~l~~~~~~~~~i~~~~~--i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
++.++.|..++..|..+.+....+.+.|- ...++.-.-+.+...-++.+..+|.+++.
T Consensus 318 pdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 318 PDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred chHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 99999999999999998888777776654 33444333332223346777788888764
No 96
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=6.5e-05 Score=78.75 Aligned_cols=317 Identities=14% Similarity=0.115 Sum_probs=202.8
Q ss_pred HHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHh
Q 003227 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (837)
Q Consensus 376 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (837)
+.++-+++.+....+.|..++-.|+..|.+++.-.....- ..-......+-++..+.+..++ .+++.|-.+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~--------~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRL 151 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL--------VYFNEIFDVLCKLSADSDQNVR-GGAELLDRL 151 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc--------cchHHHHHHHHHHhcCCccccc-cHHHHHHHH
Confidence 3455578899999999999999999999998754333211 1111222344555555555544 566666555
Q ss_pred ccChHHHHHHHHcC---CHHHHHHHHhc----CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHH
Q 003227 456 SVNAKVAKAVAEEG---GINILAVLARS----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDG 528 (837)
Q Consensus 456 ~~~~~~~~~i~~~g---~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~ 528 (837)
..+- +.+.. .++.++.+|+. .++..|...+.-|..|-..|+..-.-.-...++-|..+| .+.+++
T Consensus 152 ikdI-----Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~L---sD~s~e 223 (675)
T KOG0212|consen 152 IKDI-----VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNML---SDSSDE 223 (675)
T ss_pred HHHh-----ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHh---cCCcHH
Confidence 4321 11111 26666666654 688999998888888876553221111112355566777 557888
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHH
Q 003227 529 VLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607 (837)
Q Consensus 529 ~~~~a~~~L~~l~~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~ 607 (837)
++..+-.++.++...-.......+ ...++.++.-+.+++ +.++..|..-+.....- +...-...-.|++..++.
T Consensus 224 Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i----~g~~~l~~~s~il~~iLp 298 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKI----PGRDLLLYLSGILTAILP 298 (675)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc-HHHHHHHHHHHHHHhcC----CCcchhhhhhhhhhhccc
Confidence 887777766666542222222212 246788888888776 89998888777777663 222233344677777888
Q ss_pred HcCCCCHH-HHHHHHHH---HHhhcCChhhHHHHHHc-CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhh
Q 003227 608 LTRSPHEG-VRQEAAGA---LWNLSFDDRNREAIAAA-GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIG 682 (837)
Q Consensus 608 lL~~~~~~-~~~~a~~~---L~~Ls~~~~~~~~l~~~-g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~ 682 (837)
++.+.++. +++.+... +..+.......+. ++. ..++.+...+.+ +..+.|.+++.-+..+-....++-...
T Consensus 299 c~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~---~~~~tri~~L~Wi~~l~~~~p~ql~~h 374 (675)
T KOG0212|consen 299 CLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD---DREETRIAVLNWIILLYHKAPGQLLVH 374 (675)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHhhCcchhhhh
Confidence 88776653 54444322 3333333222222 332 347777888876 888999988888888776666655555
Q ss_pred ccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCccc
Q 003227 683 REGGVAPLIALARSEAEDVHETAAGALWNLAFNPGN 718 (837)
Q Consensus 683 ~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 718 (837)
.....+.|+..|.+.+++|...++..+.++|.++..
T Consensus 375 ~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 375 NDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 667888999999999999999999999999986654
No 97
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.18 E-value=2.2e-06 Score=58.76 Aligned_cols=40 Identities=33% Similarity=0.560 Sum_probs=37.5
Q ss_pred CCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccc
Q 003227 43 LPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSS 82 (837)
Q Consensus 43 LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~ 82 (837)
||+|++..||.+++..|+.+++.|||+|+.+...+.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999988888863
No 98
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.17 E-value=2.9e-07 Score=65.61 Aligned_cols=43 Identities=35% Similarity=0.681 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCccc
Q 003227 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWS 81 (837)
Q Consensus 39 ~~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~ 81 (837)
+|.+||+|++.+||++|+..|+.+++.||++|+.+..+...|.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 4678999999999999999999999999999999988777664
No 99
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=3.3e-05 Score=80.26 Aligned_cols=293 Identities=13% Similarity=0.096 Sum_probs=196.5
Q ss_pred HHHHHHHHhccC-hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCC
Q 003227 447 EAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSS 524 (837)
Q Consensus 447 ~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~ 524 (837)
.++..|..++.+ .-.|..+.+....+.|+++|..++..+.--+...++|..- -+..+..+.+.|.+..|+.++. +
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~---s 484 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM---S 484 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh---c
Confidence 344555556653 3467777888889999999999888888888888888874 4678899999999999999995 4
Q ss_pred CCHHHHHHHHHHHHHhhcCCC--chHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccc--
Q 003227 525 GGDGVLERAAGALANLAADDK--CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG-- 600 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~-- 600 (837)
.+..++.+..|+++++..+.+ .+-++...-++..++.+..++. -.+|..+...++|+......++..+....+..
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc-cccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 788999999999999998543 3455666667888999998876 89999999999999886544444444444332
Q ss_pred --hHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHH-Hc-CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc---
Q 003227 601 --ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIA-AA-GGVEALVVLAQSCSNASPGLQERAAGALWGLSV--- 673 (837)
Q Consensus 601 --~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~-~~-g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~--- 673 (837)
..+.|+.-+...+|-..+..+..|.+++..+++...++ ++ ..+..+..+|.. .|...+ +..
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e----------~a~r~~--L~pg~~ 631 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE----------FAGRTP--LSPGSK 631 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH----------HcccCC--CCCCCC
Confidence 34556666677777666667888888777766644443 32 233333333322 111111 110
Q ss_pred -----Cccchhhh--hc-cCChHHHHH------Hhc----cCCHHHHHHHHHHHHHHcCCc---------ccHHHHHHcC
Q 003227 674 -----SEANCIAI--GR-EGGVAPLIA------LAR----SEAEDVHETAAGALWNLAFNP---------GNALRIVEEG 726 (837)
Q Consensus 674 -----~~~~~~~l--~~-~~~i~~L~~------lL~----s~~~~v~~~a~~~L~~l~~~~---------~~~~~i~~~~ 726 (837)
.|..-..+ -+ .|+...++. ..+ +.+.+...+..|...|+.-.. ..|..+..+.
T Consensus 632 ~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~ 711 (743)
T COG5369 632 EEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCAN 711 (743)
T ss_pred cccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHc
Confidence 00000000 00 122222221 111 234678888888888875421 1455677888
Q ss_pred CHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 003227 727 GVPALVHLCSSSGSKMARFMAALALAYMF 755 (837)
Q Consensus 727 ~i~~L~~ll~~~~~~~~~~~a~~aL~~l~ 755 (837)
|+..++..++.++++.+|+.+-.||.++.
T Consensus 712 G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 712 GIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred cHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 88888888888888999999999999873
No 100
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.14 E-value=1.3e-06 Score=80.94 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=3.8
Q ss_pred CCCccEEEecCC
Q 003227 204 CPNLTDIGFLDC 215 (837)
Q Consensus 204 ~~~L~~L~l~~~ 215 (837)
||+|++|++++|
T Consensus 87 lp~L~~L~L~~N 98 (175)
T PF14580_consen 87 LPNLQELYLSNN 98 (175)
T ss_dssp -TT--EEE-TTS
T ss_pred CCcCCEEECcCC
Confidence 444444444444
No 101
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.13 E-value=1.2e-07 Score=99.86 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=88.6
Q ss_pred HHhCCCcceeeecCcccchHHHHH--cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHh
Q 003227 99 ASRCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (837)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 176 (837)
.++..+|++|+|+++......+.. ++..|..|.+++.. -+-..+..-...+.+|..++++ |++++.. ..-.-
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS---~N~Lp~v--Pecly 242 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLS---ENNLPIV--PECLY 242 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhcccc---ccCCCcc--hHHHh
Confidence 345566778888777655443332 45566666666633 3333333344456688888885 6665431 12222
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~ 254 (837)
..++|++|+|++. .||.-.+. .. ...+|++|+++.|. ++. .++..+++|+.|.+..| .++-+|+.+=...+.+
T Consensus 243 ~l~~LrrLNLS~N-~iteL~~~-~~-~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGN-KITELNMT-EG-EWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred hhhhhheeccCcC-ceeeeecc-HH-HHhhhhhhccccch-hccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhh
Confidence 4688999999988 56653322 22 23688999999884 443 56777888888887664 4444443332233333
Q ss_pred ccEEEecc
Q 003227 255 LVGLDVSR 262 (837)
Q Consensus 255 L~~L~l~~ 262 (837)
|+.+...+
T Consensus 318 Levf~aan 325 (1255)
T KOG0444|consen 318 LEVFHAAN 325 (1255)
T ss_pred hHHHHhhc
Confidence 44444433
No 102
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.12 E-value=2.8e-06 Score=104.66 Aligned_cols=82 Identities=26% Similarity=0.405 Sum_probs=34.4
Q ss_pred CCCcceeeecCcccchHHHHH-cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 102 CMNLQKLRFRGAESADSIIHL-QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
+++|+.|+|+++.....+... .+++|++|++++|..+.. +.....++++|+.|+++ +|..+..-.. ..++++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~--~c~~L~~Lp~---~i~l~s 705 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMS--RCENLEILPT---GINLKS 705 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCC--CCCCcCccCC---cCCCCC
Confidence 344555555544322111111 345555555555543321 12222345555555553 3443322110 013455
Q ss_pred CCEEEecCCC
Q 003227 181 LKKLRLSGIR 190 (837)
Q Consensus 181 L~~L~l~~~~ 190 (837)
|+.|++++|.
T Consensus 706 L~~L~Lsgc~ 715 (1153)
T PLN03210 706 LYRLNLSGCS 715 (1153)
T ss_pred CCEEeCCCCC
Confidence 5555555553
No 103
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.10 E-value=7.5e-07 Score=82.52 Aligned_cols=106 Identities=22% Similarity=0.224 Sum_probs=30.7
Q ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHh-hCCCCCCEeeccCCCCCCH-HHHHHHH
Q 003227 174 IALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VAL-GNVLSVRFLSVAGTSNMKW-GVVSQVW 249 (837)
Q Consensus 174 l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l-~~l~~L~~L~ls~~~~i~~-~~l~~~~ 249 (837)
+...+.+|+.|+++++ .|+. +..+. .+++|++|++++| .+++ +++ ..+|+|++|++++| .+.+ ..+..+
T Consensus 37 L~~~l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L- 109 (175)
T PF14580_consen 37 LGATLDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPL- 109 (175)
T ss_dssp --TT-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGG-
T ss_pred hhhhhcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHH-
Confidence 3333455666666655 3332 11111 2455666666655 2332 223 24556666666554 2211 111122
Q ss_pred hcCCCccEEEeccCCCCHH--HHHHHHhcCccccccccc
Q 003227 250 HKLPKLVGLDVSRTDVGPI--TISRLLTSSKSLKVLCAL 286 (837)
Q Consensus 250 ~~~~~L~~L~l~~~~i~~~--~l~~l~~~~~~L~~l~l~ 286 (837)
..+|+|+.|++.+|.+++. --..++..+|+|+.||-.
T Consensus 110 ~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 3455566666655544311 111223345555555543
No 104
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00032 Score=77.03 Aligned_cols=339 Identities=15% Similarity=0.067 Sum_probs=191.8
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccCh
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 459 (837)
++..+++=-.++++.++..|.+.++.+-.. ...+ -...+|.+.++++++.+|..|+-.+.++-..+
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~v~---------~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLRVD---------KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID 152 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEeeh---------HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC
Confidence 355666555677889998888888764421 1122 23458999999999999999999999887733
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccc-hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH-KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
.+...+.|-++.|..++.+.++.+...|+.+|..+...+.. -........+..++..+.. -++--+...+.++.
T Consensus 153 --~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e---c~EW~qi~IL~~l~ 227 (734)
T KOG1061|consen 153 --PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE---CTEWGQIFILDCLA 227 (734)
T ss_pred --hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH---hhhhhHHHHHHHHH
Confidence 24555666799999999999999999999999999864321 1111111122233333321 12222222223332
Q ss_pred HhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHH
Q 003227 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQ 618 (837)
Q Consensus 539 ~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~ 618 (837)
+-.-.++ +++. ..+..+...+.+.+ +.+...+..++.++... ..+ .....-...-++++.++.... +++.
T Consensus 228 ~y~p~d~-~ea~---~i~~r~~p~Lqh~n-~avvlsavKv~l~~~~~---~~~-~~~~~~~K~~~pl~tlls~~~-e~qy 297 (734)
T KOG1061|consen 228 EYVPKDS-REAE---DICERLTPRLQHAN-SAVVLSAVKVILQLVKY---LKQ-VNELLFKKVAPPLVTLLSSES-EIQY 297 (734)
T ss_pred hcCCCCc-hhHH---HHHHHhhhhhccCC-cceEeehHHHHHHHHHH---HHH-HHHHHHHHhcccceeeecccc-hhhH
Confidence 2222222 1111 12344444444443 44444555555444432 110 001111222333444443333 3333
Q ss_pred HH------------------------------------HHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHH
Q 003227 619 EA------------------------------------AGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQE 662 (837)
Q Consensus 619 ~a------------------------------------~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~ 662 (837)
-| +.++..++......+ .+..+..... ..+.+...
T Consensus 298 vaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q------vl~El~eYat---evD~~fvr 368 (734)
T KOG1061|consen 298 VALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ------VLAELKEYAT---EVDVDFVR 368 (734)
T ss_pred HHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH------HHHHHHHhhh---hhCHHHHH
Confidence 22 222322222211111 2223333333 37888888
Q ss_pred HHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcH
Q 003227 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSK 741 (837)
Q Consensus 663 ~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~ 741 (837)
.|.+++++++..-+.. .+.++.|+++++..-+.+...+...++.+.. .|..-.. .++.+..-+.+=+.|
T Consensus 369 kaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~-----vv~~l~~~~~sl~ep 438 (734)
T KOG1061|consen 369 KAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYES-----VVAILCENLDSLQEP 438 (734)
T ss_pred HHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhh-----hhhhhcccccccCCh
Confidence 9999999998653221 6789999999988777788888888888876 5554433 334555555555567
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhhc
Q 003227 742 MARFMAALALAYMFDGRMDEFALIG 766 (837)
Q Consensus 742 ~~~~~a~~aL~~l~~~~~~~~~~i~ 766 (837)
.+|..-.|.++.-+..-+++...+.
T Consensus 439 eak~amiWilg~y~~~i~~a~elL~ 463 (734)
T KOG1061|consen 439 EAKAALIWILGEYAERIENALELLE 463 (734)
T ss_pred HHHHHHHHHHhhhhhccCcHHHHHH
Confidence 7888888888887776665543333
No 105
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.07 E-value=8.3e-07 Score=93.21 Aligned_cols=191 Identities=17% Similarity=0.154 Sum_probs=85.4
Q ss_pred cccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccch-HHHHHcCCCccEEecCCCC--CCCHHHHHHHHhcCCCCCeEE
Q 003227 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESAD-SIIHLQARNLRELSGDYCR--KITDATLSVIVARHEALESLQ 157 (837)
Q Consensus 81 ~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~c~--~~~~~~l~~~~~~~~~L~~L~ 157 (837)
+.+++++..+..-.+..+ ...|+|+.+++..+.... +.+.....+|++|+|.++. .++.+.+ +..|.|++||
T Consensus 81 ~~LdlsnNkl~~id~~~f-~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L----~~l~alrslD 155 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFF-YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL----SALPALRSLD 155 (873)
T ss_pred eeeeccccccccCcHHHH-hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH----HhHhhhhhhh
Confidence 345555544333222221 223566666665553321 1111133456666665543 1222222 2345566666
Q ss_pred eCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC--hHHhhCCCCCCEeecc
Q 003227 158 LGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVA 235 (837)
Q Consensus 158 l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~l~~l~~L~~L~ls 235 (837)
|+ .+.++......+. .-+++++|+|++. .||+-...++.. +.+|..|.|+.|...+ -..|+++++|+.|+|.
T Consensus 156 LS---rN~is~i~~~sfp-~~~ni~~L~La~N-~It~l~~~~F~~-lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 156 LS---RNLISEIPKPSFP-AKVNIKKLNLASN-RITTLETGHFDS-LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hh---hchhhcccCCCCC-CCCCceEEeeccc-cccccccccccc-cchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 64 2222221111111 1235666666665 455544333332 2456666666653222 1345566666666665
Q ss_pred CCCCCCH-HHHHHHHhcCCCccEEEeccCCC---CHHHHHHHHhcCcccccccccccc
Q 003227 236 GTSNMKW-GVVSQVWHKLPKLVGLDVSRTDV---GPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 236 ~~~~i~~-~~l~~~~~~~~~L~~L~l~~~~i---~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
.|. +.. +++ -+++++.|+.|.+.+|+| .|..+. +|.++++|+|..+.
T Consensus 230 rN~-irive~l--tFqgL~Sl~nlklqrN~I~kL~DG~Fy----~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 230 RNR-IRIVEGL--TFQGLPSLQNLKLQRNDISKLDDGAFY----GLEKMEHLNLETNR 280 (873)
T ss_pred ccc-eeeehhh--hhcCchhhhhhhhhhcCcccccCccee----eecccceeecccch
Confidence 542 211 111 124566666666666543 233222 36666677666554
No 106
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=1.8e-06 Score=83.13 Aligned_cols=162 Identities=18% Similarity=0.168 Sum_probs=96.2
Q ss_pred HHHHHHhCCCcceeeecCcccc--hH-H----H---HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCC
Q 003227 95 AASLASRCMNLQKLRFRGAESA--DS-I----I---HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCE 164 (837)
Q Consensus 95 l~~l~~~~~~L~~L~l~~~~~~--~~-~----~---~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 164 (837)
+..+..+|.+|+.|..++.... .+ + . ...+++|+.+.++.|. .+.+..+...-|.|.++...++.-.
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeeccccc
Confidence 3456778888999998875321 11 1 1 1156899999999986 3344444455688888877521110
Q ss_pred CC----CHHH---------------HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhC
Q 003227 165 RI----TSDA---------------VKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGN 225 (837)
Q Consensus 165 ~~----~~~~---------------l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~ 225 (837)
.. .... +......+..|++|+|+++ .|+ .+..-.+..|.++.|++++|...+-..+..
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~ 327 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAE 327 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chh--hhhhhhhhccceeEEeccccceeeehhhhh
Confidence 00 0000 0111123668889999887 343 223334456999999999986555567889
Q ss_pred CCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCC
Q 003227 226 VLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDV 265 (837)
Q Consensus 226 l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i 265 (837)
+++|..||||+|..-.-.|+ ...+-+++.|.|++|.+
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gw---h~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGW---HLKLGNIKTLKLAQNKI 364 (490)
T ss_pred cccceEeecccchhHhhhhh---HhhhcCEeeeehhhhhH
Confidence 99999999998732222222 22344455555555533
No 107
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.002 Score=69.98 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=144.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~ 460 (837)
+-++.+|.+.-+-++..|...+.+++-.-+ +++ .-+.|.|++-|.++|+.++..|+.++..|+. +|.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYP----------eAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYP----------EAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhh----------HhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 667888888889999999999988663222 222 2367899999999999999999999999998 775
Q ss_pred HHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 461 VAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
+.-.+ -|.+.+++-+ .+.=+.-..+..+++|+.- |..... .+++|.+++.+ ..-..+...++.++.
T Consensus 215 nyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~s--T~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 215 NYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMES--TVAMSLLYECVNTVV 282 (877)
T ss_pred ccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHh--hHHHHHHHHHHHHhe
Confidence 54433 3566677754 3444556677777888753 333222 46788888863 222344555544443
Q ss_pred --HhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHH
Q 003227 539 --NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (837)
Q Consensus 539 --~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~ 616 (837)
+++.......+.+ .-+++.|-.++.+.+ +.++.-++-++..+... ++ ..+ ..--+.++++|.+.|+.+
T Consensus 283 a~s~s~g~~d~~asi-qLCvqKLr~fiedsD-qNLKYlgLlam~KI~kt---Hp---~~V--qa~kdlIlrcL~DkD~SI 352 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASI-QLCVQKLRIFIEDSD-QNLKYLGLLAMSKILKT---HP---KAV--QAHKDLILRCLDDKDESI 352 (877)
T ss_pred eehhccCCCCcHHHH-HHHHHHHhhhhhcCC-ccHHHHHHHHHHHHhhh---CH---HHH--HHhHHHHHHHhccCCchh
Confidence 3333221221111 125777777888775 89999999999998763 22 111 122356788999999999
Q ss_pred HHHHHHHHHhhcCCh
Q 003227 617 RQEAAGALWNLSFDD 631 (837)
Q Consensus 617 ~~~a~~~L~~Ls~~~ 631 (837)
|..|+..|.-+....
T Consensus 353 RlrALdLl~gmVskk 367 (877)
T KOG1059|consen 353 RLRALDLLYGMVSKK 367 (877)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999998877653
No 108
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.04 E-value=1e-06 Score=97.73 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=75.4
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCC--CCCChHHhhCCCCCCEeeccCCC--CCCHH-----HHHHHH
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC--LNVDEVALGNVLSVRFLSVAGTS--NMKWG-----VVSQVW 249 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~ls~~~--~i~~~-----~l~~~~ 249 (837)
+.|+.|.+.+. .++|.++..+.. .++|+.|+|++| ..+.+..+..+..|+.|+||||. .+.+. .++.+.
T Consensus 359 ~~Lq~LylanN-~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANN-HLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcC-cccccchhhhcc-ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence 45666666666 688888887764 589999999998 34567788889999999999982 11111 111111
Q ss_pred ------------hcCCCccEEEeccCCCCHHHHHHHHhcCccccccccccccc
Q 003227 250 ------------HKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (837)
Q Consensus 250 ------------~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~ 290 (837)
..++.|+.+|++.|+++.-.+..... .++|++||++|+..
T Consensus 437 ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 437 AHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCCceeechhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 23678888999988876655544322 37899999988873
No 109
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=2.6e-05 Score=74.39 Aligned_cols=189 Identities=18% Similarity=0.160 Sum_probs=117.0
Q ss_pred HhCCCcceeeecCcccchH----HHH--HcCCCccEEecCCCCC--CCH----HHHHHHH-----hcCCCCCeEEeCCCC
Q 003227 100 SRCMNLQKLRFRGAESADS----IIH--LQARNLRELSGDYCRK--ITD----ATLSVIV-----ARHEALESLQLGPDF 162 (837)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~----~~~--~~~~~L~~L~l~~c~~--~~~----~~l~~~~-----~~~~~L~~L~l~~~~ 162 (837)
-.||+|+.++|+.+.+... ... .+..+|++|.+++|.- +.. ..+..+. ..-|.|+....+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg--- 165 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG--- 165 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec---
Confidence 3689999999998866432 222 2678899999999862 111 1122221 245788888885
Q ss_pred CCCCCHHHH---HHHHhcCCCCCEEEecCCCCCCHHHHHHHH----hhCCCccEEEecCCCCCChH-------HhhCCCC
Q 003227 163 CERITSDAV---KAIALCCPKLKKLRLSGIRDICGDAINALA----KLCPNLTDIGFLDCLNVDEV-------ALGNVLS 228 (837)
Q Consensus 163 ~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~-------~l~~l~~ 228 (837)
.+++.+.+. ....++-.+|+.+++... .|..+|+..++ .+|.+|+.|++.+| .+|-. ++...+.
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~ 243 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNL 243 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccch
Confidence 444433332 233333468999999887 78888776653 67899999999998 45543 2356678
Q ss_pred CCEeeccCCCCCCHHHHHHHH-----hcCCCccEEEeccCCCC-----HHHHHHHHh-cCcccccccccccccccchh
Q 003227 229 VRFLSVAGTSNMKWGVVSQVW-----HKLPKLVGLDVSRTDVG-----PITISRLLT-SSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 229 L~~L~ls~~~~i~~~~l~~~~-----~~~~~L~~L~l~~~~i~-----~~~l~~l~~-~~~~L~~l~l~~c~~i~~~~ 295 (837)
|+.|++..| .++..|...+. ...|+|..|...++.+. +.++..+.. ..|-|..|.+.|+. +++.+
T Consensus 244 lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~E~~ 319 (388)
T COG5238 244 LRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IKELA 319 (388)
T ss_pred hhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-chhHH
Confidence 899999888 45555555444 34678888877775432 222333322 34556666666554 44443
No 110
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.03 E-value=2.2e-05 Score=64.75 Aligned_cols=88 Identities=32% Similarity=0.414 Sum_probs=73.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHH
Q 003227 643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRI 722 (837)
Q Consensus 643 i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i 722 (837)
|+.|++.+.. ++++.+|..|+.+|+.+. ....++.|+++++++++.|+..|+.+|..+.
T Consensus 1 i~~L~~~l~~--~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQN--DPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHT--SSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhc--CCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 5788888843 499999999999999642 2346899999999999999999999999885
Q ss_pred HHcCCHHHHHHHHhcCCcHHHHHHHHHHHH
Q 003227 723 VEEGGVPALVHLCSSSGSKMARFMAALALA 752 (837)
Q Consensus 723 ~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~ 752 (837)
...+++.|.+++.++++..+|..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 35689999999998877888999999885
No 111
>PF05536 Neurochondrin: Neurochondrin
Probab=98.01 E-value=0.0008 Score=74.97 Aligned_cols=237 Identities=17% Similarity=0.066 Sum_probs=161.9
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhccCh----HHHHHHHHcCCHHHHHHHHhc-------CCHHHHHHHHHHHHhhc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNA----KVAKAVAEEGGINILAVLARS-------MNRLVAEEAAGGLWNLS 497 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~----~~~~~i~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~~l~ 497 (837)
.++..+.+|++.+.+-+..++-.+.++.... ..++.+.+.=|.+-+-++|++ +....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3567889999988777888888888888733 245568888888999999987 34567888999999999
Q ss_pred cCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHH
Q 003227 498 VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAAR 577 (837)
Q Consensus 498 ~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~ 577 (837)
..++....---.+-+|.|++++.. ..+.++...+..+|..++..++.+..+++.|+++.|++.+.+. +.....|..
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~--~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--~~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSS--SSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--SFQMEIALN 161 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC--cchHHHHHH
Confidence 987655333333469999999974 3334899999999999999999999999999999999999874 456788999
Q ss_pred HHHHHhcCCCC-CCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhh--HHHHHHcC----CHHHHHHHH
Q 003227 578 ALANLAAHGDS-NSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN--REAIAAAG----GVEALVVLA 650 (837)
Q Consensus 578 ~L~~l~~~~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~l~~~g----~i~~L~~ll 650 (837)
++.++...... ........ -..+++.+-..+.......+-..+..|..+-...+. ........ ....+..++
T Consensus 162 lL~~Lls~~~~~~~~~~~~~-l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQL-LHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHhcchhhhhhhHHH-HHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 99998764220 00000000 013344455555555555566677777776444321 11111122 244445566
Q ss_pred hhcCCCCHHHHHHHHHHHHhcc
Q 003227 651 QSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 651 ~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
.+ ...+.-|..|+...+.+.
T Consensus 241 ~s--r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 241 QS--RLTPSQRDPALNLAASLL 260 (543)
T ss_pred hc--CCCHHHHHHHHHHHHHHH
Confidence 55 566777777777666655
No 112
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=0.00013 Score=69.79 Aligned_cols=202 Identities=16% Similarity=0.089 Sum_probs=126.6
Q ss_pred HHHHHHHhCCCcceeeecCcccchHHHHH------cCCCccEEecCCCC--CCCHH------HHHHHHhcCCCCCeEEeC
Q 003227 94 MAASLASRCMNLQKLRFRGAESADSIIHL------QARNLRELSGDYCR--KITDA------TLSVIVARHEALESLQLG 159 (837)
Q Consensus 94 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~c~--~~~~~------~l~~~~~~~~~L~~L~l~ 159 (837)
++..+.. ...++.++|+|+.+....... .-++|+..+++.-. ...++ -+....-.||+|+..+|+
T Consensus 22 v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 22 VVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 4444444 467889999999887654433 33566666665421 11121 122223469999999996
Q ss_pred CCCCCC-CCHHHHHHHHhcCCCCCEEEecCCCCCCHHH-------HHHHH-----hhCCCccEEEecCCCCCChH-----
Q 003227 160 PDFCER-ITSDAVKAIALCCPKLKKLRLSGIRDICGDA-------INALA-----KLCPNLTDIGFLDCLNVDEV----- 221 (837)
Q Consensus 160 ~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~-------~~~l~-----~~~~~L~~L~l~~~~~~~~~----- 221 (837)
. .-.. -....+..+..+-..|++|.+++| .+...+ +.+++ ..-|.|+......|...+..
T Consensus 101 D-NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 101 D-NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred c-cccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 2 2211 122334444445678999999988 554322 22232 23488999998887543331
Q ss_pred -HhhCCCCCCEeeccCCCCCCHHHHHHHH----hcCCCccEEEeccCCCCHHHHHHH---HhcCcccccccccccccccc
Q 003227 222 -ALGNVLSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVGPITISRL---LTSSKSLKVLCALNCPVLEE 293 (837)
Q Consensus 222 -~l~~l~~L~~L~ls~~~~i~~~~l~~~~----~~~~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~l~l~~c~~i~~ 293 (837)
.+..-.+|+.+.+..| .|..+++..+. ..|.+|+.|||..|-++-.+-..+ ....+.|+.|.+.+|- ++.
T Consensus 179 ~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~ 256 (388)
T COG5238 179 ALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSN 256 (388)
T ss_pred HHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hcc
Confidence 2333368999999876 57777766554 568999999999987765554443 3346788999999998 777
Q ss_pred hhHHHHH
Q 003227 294 ENNISAV 300 (837)
Q Consensus 294 ~~~~~~~ 300 (837)
.|..++.
T Consensus 257 ~G~~~v~ 263 (388)
T COG5238 257 EGVKSVL 263 (388)
T ss_pred ccHHHHH
Confidence 7766655
No 113
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0021 Score=69.76 Aligned_cols=217 Identities=12% Similarity=0.086 Sum_probs=154.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHH
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIA 507 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~ 507 (837)
-+-++.+|.+..+-+|..|+-+|+.+.. .|+.-+. .+|.|.+-|.++|+.|+.+|+..++.|+. +|.+.-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-- 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-- 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--
Confidence 4578999999999999999999999887 5543222 47899999999999999999999999996 5544322
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (837)
.-|.+..+|.+ +.+.-+....+..+++|+- .|..... .++++..++++.....+...++.++...+...
T Consensus 219 ---LAP~ffklltt--SsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 ---LAPLFYKLLVT--SSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ---ccHHHHHHHhc--cCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 34667788874 4555567777888888886 4555443 47889999987765566666666554432211
Q ss_pred CCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
. .+++...+ .-++..|-.++.+.|+.++.-++.++..+... +...+. --+.++++|.+ .++.+|..|+
T Consensus 289 g-~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~D---kD~SIRlrAL 357 (877)
T KOG1059|consen 289 G-MSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDD---KDESIRLRAL 357 (877)
T ss_pred C-CCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhcc---CCchhHHHHH
Confidence 0 11111111 23466677778889999999999999988764 332211 24567788887 8999999999
Q ss_pred HHHHhcccC
Q 003227 666 GALWGLSVS 674 (837)
Q Consensus 666 ~~L~~l~~~ 674 (837)
..|.-+...
T Consensus 358 dLl~gmVsk 366 (877)
T KOG1059|consen 358 DLLYGMVSK 366 (877)
T ss_pred HHHHHHhhh
Confidence 999887654
No 114
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.011 Score=65.48 Aligned_cols=337 Identities=12% Similarity=0.131 Sum_probs=187.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (837)
.|.+.+++++.++.++..|+.|..++-...++. . +-.++.-.++|.+.+..+...++..+..++. ++
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l-------~-----e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDL-------V-----EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH-------H-----HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 478888889999999999999998866544332 2 2235566778888889999899999999888 66
Q ss_pred HHHHHHHHcCCHHHHHHHHhc---------------CCHHHHHHHHHHHHhhccCc-cchHHHHhhCCHHHHHHHHHhhC
Q 003227 460 KVAKAVAEEGGINILAVLARS---------------MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWS 523 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~---------------~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~ 523 (837)
+.-..+.+ .++.++..|+. ++|-+|...++.|.-+..++ +..+.+.+ .|.+...+..
T Consensus 212 ~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntd 284 (866)
T KOG1062|consen 212 DALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTD 284 (866)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhccc
Confidence 66666655 46666666642 27778888888888888754 33333332 2333332200
Q ss_pred -CC--CHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccc
Q 003227 524 -SG--GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600 (837)
Q Consensus 524 -~~--~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 600 (837)
+. .-.+...++.++..+-.+...+.. ++..|-++|.+.+ ..++..|+..|..+...++. .. ..
T Consensus 285 sskN~GnAILYE~V~TI~~I~~~~~Lrvl-----ainiLgkFL~n~d-~NirYvaLn~L~r~V~~d~~----av----qr 350 (866)
T KOG1062|consen 285 SSKNAGNAILYECVRTIMDIRSNSGLRVL-----AINILGKFLLNRD-NNIRYVALNMLLRVVQQDPT----AV----QR 350 (866)
T ss_pred ccccchhHHHHHHHHHHHhccCCchHHHH-----HHHHHHHHhcCCc-cceeeeehhhHHhhhcCCcH----HH----HH
Confidence 00 112344444444444333333321 2344445555443 45555555555555442110 00 01
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc--Cccch
Q 003227 601 ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV--SEANC 678 (837)
Q Consensus 601 ~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~--~~~~~ 678 (837)
--..++++|+++|..++..|.+.+..|......+ .+ ++.|+.+|.. .+++.+...+.-+..++. .|+.+
T Consensus 351 Hr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~-~m-----v~eLl~fL~~---~d~~~k~~~as~I~~laEkfaP~k~ 421 (866)
T KOG1062|consen 351 HRSTILECLKDPDVSIKRRALELSYALVNESNVR-VM-----VKELLEFLES---SDEDFKADIASKIAELAEKFAPDKR 421 (866)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH-HH-----HHHHHHHHHh---ccHHHHHHHHHHHHHHHHhcCCcch
Confidence 1234556666666666666666666655433222 22 3455566655 455555555555555542 12221
Q ss_pred hh-------------hhccCChHHHHHHhccC-------------------------CHHHHHHHHHHHHHHcC---Cc-
Q 003227 679 IA-------------IGREGGVAPLIALARSE-------------------------AEDVHETAAGALWNLAF---NP- 716 (837)
Q Consensus 679 ~~-------------l~~~~~i~~L~~lL~s~-------------------------~~~v~~~a~~~L~~l~~---~~- 716 (837)
-- ++....+..++.++.++ .+.....|.|++..... +.
T Consensus 422 W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~ 501 (866)
T KOG1062|consen 422 WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGA 501 (866)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCc
Confidence 10 11112333344444322 34455566677666552 21
Q ss_pred --ccHHHHHHcCCHHHHHHHHhcC-CcHHHHHHHHHHHHHhhCCCC
Q 003227 717 --GNALRIVEEGGVPALVHLCSSS-GSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 717 --~~~~~i~~~~~i~~L~~ll~~~-~~~~~~~~a~~aL~~l~~~~~ 759 (837)
+....+-+..++..|..++.+. .+..++..|..||..+..--+
T Consensus 502 ~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 502 NEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred cccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence 1222333456677888877653 347788999999998866444
No 115
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0028 Score=68.59 Aligned_cols=357 Identities=17% Similarity=0.140 Sum_probs=205.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHhhcc-CccchHHHHh
Q 003227 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSV-GEEHKGAIAD 508 (837)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~-~~~~~~~l~~ 508 (837)
.+.+=|.+.|+..+..|+.+++++..-+ .++.+.. -|+ ++|.++ .+-++..|+-+|-.|-. +++.. ..
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~re-~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~ 185 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGSRE-MAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NP 185 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhccHh-HHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc---Ch
Confidence 4445556678999999999999987622 2222221 133 555553 35566666666666654 33321 12
Q ss_pred hCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc-CC-CchHHHHhcCcHHHHHHHHhc------------CCCHHHHHH
Q 003227 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DD-KCSMEVALAGGVHALVMLARS------------CKFEGVQEQ 574 (837)
Q Consensus 509 ~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~-~~-~~~~~l~~~g~i~~L~~ll~~------------~~~~~~~~~ 574 (837)
.+-...++.+|. +.+..+.-.+...+-.++. .+ +.+..+-. ++..|...... -+.|-++..
T Consensus 186 ~~W~~riv~LL~---D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 186 GEWAQRIVHLLD---DQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred hhHHHHHHHHhC---ccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 234667788883 3445555566666666665 22 22221111 12222222111 123677778
Q ss_pred HHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC--CHHHHH-----HHHHHHHhhcCC-hhhHHHHHHcCCHHHH
Q 003227 575 AARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP--HEGVRQ-----EAAGALWNLSFD-DRNREAIAAAGGVEAL 646 (837)
Q Consensus 575 a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~-----~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L 646 (837)
+++.|.+.-.. ++......-.++++.++...+.. ...++. +.+--..+|+.+ +...+.+.+ ++..|
T Consensus 261 l~rlLq~~p~~----~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~L 334 (938)
T KOG1077|consen 261 LLRLLQIYPTP----EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQL 334 (938)
T ss_pred HHHHHHhCCCC----CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHH
Confidence 88888777432 22222222224444444444421 122222 222223355555 334444443 58889
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhc-cCCHHHHHHHHHHHHHHcCCcccHHHHHHc
Q 003227 647 VVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-SEAEDVHETAAGALWNLAFNPGNALRIVEE 725 (837)
Q Consensus 647 ~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~ 725 (837)
..++.+ ....+|..|+..++.++.++.....+..+ .+.++..|+ ..|..+++.|+..|+.||.- +|...|
T Consensus 335 g~fls~---rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~I--- 405 (938)
T KOG1077|consen 335 GQFLSH---RETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQI--- 405 (938)
T ss_pred HHHhhc---ccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHH---
Confidence 999987 88899999999999999886666666655 778888898 67889999999999999953 344344
Q ss_pred CCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc----chhhhccCccCcccccchhHHHHHHHHHHHHHHHhcCChhH
Q 003227 726 GGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD----EFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQA 801 (837)
Q Consensus 726 ~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~ 801 (837)
+..|++.+.+.+ ..+|+.-+.-.+-+++.... -+.++-.+..-+...+. ++.|-+ +.. ..-+++++
T Consensus 406 --V~elLqYL~tAd-~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs-deVW~R----vvQ--iVvNnedl 475 (938)
T KOG1077|consen 406 --VAELLQYLETAD-YSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS-DEVWYR----VVQ--IVVNNEDL 475 (938)
T ss_pred --HHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc-HHHHHH----hhe--eEecchhh
Confidence 347888887765 66776655555555543331 12223233222222221 122112 222 34577777
Q ss_pred HHHHHhccchhhhHHHHHHhhhccCCc
Q 003227 802 FATAAASSAPAALTQVTERARIQEAGH 828 (837)
Q Consensus 802 ~~~~~~~~a~~~l~~~~~~~~~~~~~~ 828 (837)
|.- ++.-...+|+..+-.|.+++.||
T Consensus 476 q~y-aak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 476 QGY-AAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred hHH-HHHHHHHHHhhhHHHHHHHHhhh
Confidence 744 45778899999999999999998
No 116
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=5e-06 Score=80.25 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=92.3
Q ss_pred ceeeecCcccch----HHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCC
Q 003227 106 QKLRFRGAESAD----SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (837)
Q Consensus 106 ~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L 181 (837)
+-|.+.||.... ..+...+..+++|+|.++..-....+..+.+++|.|+.|+|+ |+.+.. .+..+.-...+|
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls---~N~L~s-~I~~lp~p~~nl 123 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS---CNSLSS-DIKSLPLPLKNL 123 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc---CCcCCC-ccccCcccccce
Confidence 344555554432 234457788888888886533446777778888888888885 666542 233343335688
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCC----CCChHHhhCC-CCCCEeeccCCCCCCHHHHHHHHhcCCCcc
Q 003227 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL----NVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (837)
Q Consensus 182 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~----~~~~~~l~~l-~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~ 256 (837)
+.|-|+|. .++......+.+..|.+++|+++.|. +++|+..... +.+++|.+..|...-+.....+.+.+|++.
T Consensus 124 ~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 124 RVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred EEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 88888887 67777777777778888888888761 2333333333 255555555554333333334444445555
Q ss_pred EEEeccCC
Q 003227 257 GLDVSRTD 264 (837)
Q Consensus 257 ~L~l~~~~ 264 (837)
.+-+..|.
T Consensus 203 sv~v~e~P 210 (418)
T KOG2982|consen 203 SVFVCEGP 210 (418)
T ss_pred heeeecCc
Confidence 44444443
No 117
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0046 Score=67.99 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=69.9
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (837)
|..+-+-|+++++.+|..|..+|..+- ..++..-.+-.+-++..+..+.+|..|+-++-.+-. ++
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIR--------------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~ 175 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIR--------------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP 175 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcc--------------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh
Confidence 567788889999999999998887522 122222223334455566889999999999998876 77
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~ 498 (837)
+.+.++. +.+-.+|.+.++-|.-.|+.+...++-
T Consensus 176 e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 176 EQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred hhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 6666543 445567778888888888877776664
No 118
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.94 E-value=0.00062 Score=73.77 Aligned_cols=289 Identities=15% Similarity=0.038 Sum_probs=182.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhccChHHHH---HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-cchHHHH
Q 003227 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAK---AVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIA 507 (837)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~---~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~ 507 (837)
.++..|++..+.++.+|+..++.++.--..+. .+...|. .|.+-|....+++.-..+.++..+...- -.+..--
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 44566778889999999999998876333332 2333322 3456667788888877777776665421 1111112
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCc---hHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKC---SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~---~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (837)
-.+.+|.|..+|++ ....+++++...++.++.. ++. ++.+. +.--|+.+|...+ .+++++|...+..++
T Consensus 881 i~dllPrltPILkn---rheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahk-K~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKN---RHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHK-KEIRRAAVNTFGYIA 953 (1172)
T ss_pred hhhhcccchHhhhh---hHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHH-HHHHHHHHhhhhHHH
Confidence 34578999999965 7889999999999999973 432 34332 3455778888775 899999999999998
Q ss_pred cCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHH
Q 003227 584 AHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQER 663 (837)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~ 663 (837)
.. +.-.+++..|++-|+..+-..|....-++.-.+.. .|-+..|-.++.....++..||.-
T Consensus 954 ka----------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~---------c~pFtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 954 KA----------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAET---------CGPFTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred Hh----------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh---------cCchhhhHHHHhhccCchhHHHHh
Confidence 63 11124445555555544333332222222222211 133444444444433477888888
Q ss_pred HHHHHHhcccC--ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhc----
Q 003227 664 AAGALWGLSVS--EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSS---- 737 (837)
Q Consensus 664 A~~~L~~l~~~--~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~---- 737 (837)
.+.+|+.+-.. +-.+..+. ...|.|-+.|-+.+..-+..|..++.+|+.++.. .|..+.++++|+-
T Consensus 1015 VLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g------~g~eda~iHLLN~iWpN 1086 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG------TGCEDALIHLLNLIWPN 1086 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC------cCcHHHHHHHHHHhhhh
Confidence 88888876532 22222222 1456666788888999999999999999986542 3667777777764
Q ss_pred --CCcHHHHHHHHHHHHHhhC
Q 003227 738 --SGSKMARFMAALALAYMFD 756 (837)
Q Consensus 738 --~~~~~~~~~a~~aL~~l~~ 756 (837)
..+|++...-..++..+..
T Consensus 1087 Ile~sPhviqa~~e~~eg~r~ 1107 (1172)
T KOG0213|consen 1087 ILETSPHVIQAFDEAMEGLRV 1107 (1172)
T ss_pred hcCCChHHHHHHHHHHHHHHH
Confidence 4467787777776666643
No 119
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=0.0011 Score=71.20 Aligned_cols=308 Identities=15% Similarity=0.060 Sum_probs=189.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhh
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~ 509 (837)
++.+++-+..+.+.+|+....+|..+....+.... ....+.+.+++......-+..+...++.+..+. .-..+.+.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~~~ 173 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLKEF 173 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhhhh
Confidence 55778888889999999999998876642211110 012567778888777788888888888887653 33445566
Q ss_pred CCHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhhcCCCchHHHHhcCcHHHHHHHHh---cCCCHHHHHHHHHHHHHHhcC
Q 003227 510 GGVKALVDLIFKWSSGGDGVLER-AAGALANLAADDKCSMEVALAGGVHALVMLAR---SCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~-a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~ 585 (837)
+.+..+-..+++ .+....+. +.-+.-.....-. ...+...++.+..++. +.. +.++..|..+...+...
T Consensus 174 ~~l~~l~~ai~d---k~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~-~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 174 GFLDNLSKAIID---KKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKI-NKVREAAVEAAKAIMRC 246 (569)
T ss_pred hHHHHHHHHhcc---cchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccc-hhhhHHHHHHHHHHHHh
Confidence 667777777753 33333332 2222221111100 1112233444444443 333 77888777776666543
Q ss_pred CCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
.+.. .-...++.++.-+.......+..++..+..++...+.+-...-...++.+.+.|.+ ..+++|.++.
T Consensus 247 ---~~~~----aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D---T~~evr~a~~ 316 (569)
T KOG1242|consen 247 ---LSAY----AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD---TKPEVRKAGI 316 (569)
T ss_pred ---cCcc----hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc---CCHHHHHHHH
Confidence 1100 01123444444444445567788999999998887777677777899999999988 9999999999
Q ss_pred HHHHhcccC---ccchh---hhhc--------------------------cCChHHHHHHh----ccCCHHHHHHHHHHH
Q 003227 666 GALWGLSVS---EANCI---AIGR--------------------------EGGVAPLIALA----RSEAEDVHETAAGAL 709 (837)
Q Consensus 666 ~~L~~l~~~---~~~~~---~l~~--------------------------~~~i~~L~~lL----~s~~~~v~~~a~~~L 709 (837)
.+|.+++.. ++... .+.+ .-.+..++.++ ...+..+++.++.+.
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 999988742 22110 1111 01122233333 445677889999999
Q ss_pred HHHcCCcccHHHHHH--cCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 710 WNLAFNPGNALRIVE--EGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 710 ~~l~~~~~~~~~i~~--~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.||+.--++...+.. ...+|.|-..+.+. .|++|..++.||+.+.++..
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALLERLG 447 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHHHH
Confidence 999974444433332 23466666666666 59999999999988766443
No 120
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.92 E-value=6.6e-07 Score=94.47 Aligned_cols=183 Identities=21% Similarity=0.195 Sum_probs=88.9
Q ss_pred CCCcceeeecCcccchHHHHH-cCCCccEEecCCCCC--CCH-------------------HHHHHHHhcCCCCCeEEeC
Q 003227 102 CMNLQKLRFRGAESADSIIHL-QARNLRELSGDYCRK--ITD-------------------ATLSVIVARHEALESLQLG 159 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~--~~~-------------------~~l~~~~~~~~~L~~L~l~ 159 (837)
...|+.|+|+++.....--.. ..+++-.|+|+++.. +.. +.+..-.+.+.+|++|+|+
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence 356777777766544322111 345666666666431 111 1222222334456666664
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCC
Q 003227 160 PDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGT 237 (837)
Q Consensus 160 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~ 237 (837)
.+.+...-++.+.. +.+|+.|++++. +-|-..+..-...+.||..+|++.| .++- +++..+++|+.|+||+|
T Consensus 182 ---~NPL~hfQLrQLPs-mtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 182 ---NNPLNHFQLRQLPS-MTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred ---CChhhHHHHhcCcc-chhhhhhhcccc-cchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC
Confidence 22233333333322 445555556655 2222222222233456777777766 3332 56667777777777775
Q ss_pred CCCCHHHHHHHHhcCCCccEEEeccCCCC--HHHHHHHHhcCcccccccccccccccchhHHH
Q 003227 238 SNMKWGVVSQVWHKLPKLVGLDVSRTDVG--PITISRLLTSSKSLKVLCALNCPVLEEENNIS 298 (837)
Q Consensus 238 ~~i~~~~l~~~~~~~~~L~~L~l~~~~i~--~~~l~~l~~~~~~L~~l~l~~c~~i~~~~~~~ 298 (837)
.++.-.+. ...-.+|++|++|+|+++ +..+. .+++|+.|.+.++. ++-+|+.+
T Consensus 256 -~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~avc----KL~kL~kLy~n~Nk-L~FeGiPS 310 (1255)
T KOG0444|consen 256 -KITELNMT--EGEWENLETLNLSRNQLTVLPDAVC----KLTKLTKLYANNNK-LTFEGIPS 310 (1255)
T ss_pred -ceeeeecc--HHHHhhhhhhccccchhccchHHHh----hhHHHHHHHhccCc-ccccCCcc
Confidence 33322211 112345777777776553 22221 25667777666554 66666333
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.92 E-value=4.5e-05 Score=62.83 Aligned_cols=86 Identities=26% Similarity=0.286 Sum_probs=70.8
Q ss_pred HHHHHHhh-hcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccCh
Q 003227 381 AGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (837)
Q Consensus 381 i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 459 (837)
||.|++.+ +++++.++..|+.+|+.+. ...+++.|+++++++++.+|..|+.+|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 57899999 8889999999999999632 23458899999999999999999999998842
Q ss_pred HHHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLW 494 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~ 494 (837)
...++.|.+++.++ +..++..|+.+|+
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23789999999774 6667888888874
No 122
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.0011 Score=69.81 Aligned_cols=354 Identities=12% Similarity=0.009 Sum_probs=205.8
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC-ChhHHHHHHHHHHHhccChH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAK 460 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~ 460 (837)
...+..|.++.|.....|+..++.++...-.+- .+ .|.++.++.....+ -...+..++.++++++.+..
T Consensus 97 ~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~-----~w-----p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~ 166 (858)
T COG5215 97 GMALRALKSPEPRFCTMAAQLLAAIARMELPNS-----LW-----PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA 166 (858)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHhhCccc-----cc-----hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC
Confidence 455667788899999999999998776544330 01 12233444444444 34578899999999988443
Q ss_pred HHHHHHHcCC-HHHHHH-HHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHH-hhCCCCHHHHHHHHHH
Q 003227 461 VAKAVAEEGG-INILAV-LARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF-KWSSGGDGVLERAAGA 536 (837)
Q Consensus 461 ~~~~i~~~g~-i~~L~~-lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~-~~~~~~~~~~~~a~~~ 536 (837)
....+...+. +-.++. .++. ++..+|-.|+.+|.+-.. ..+..+...+-...++...- .....+.+++..|.++
T Consensus 167 Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgC 244 (858)
T COG5215 167 PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGC 244 (858)
T ss_pred HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHH
Confidence 3333333333 333333 2333 577788888888887221 22333333333333333221 1256788999999999
Q ss_pred HHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-----------CCCc--ccchhhccchH
Q 003227 537 LANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD-----------SNSN--NSAVGQEAGAL 602 (837)
Q Consensus 537 L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-----------~~~~--~~~~~~~~~~i 602 (837)
|..+.. .-...+...+.-......+.+.+.+ +++...++.....++...- ..-+ +.....-.+++
T Consensus 245 l~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvl 323 (858)
T COG5215 245 LNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVL 323 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHH
Confidence 988765 3333344444444455555666665 7888888888877775310 0001 11111124578
Q ss_pred HHHHHHcCCC-------CHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhh-cCCCCHHHHHHHHHHHHhcccC
Q 003227 603 EALVQLTRSP-------HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQS-CSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 603 ~~L~~lL~~~-------~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
|.|+++|... +..+...|..+|.-.+.... ...+.+.+.+.+. ..+++..-++.|+.+++.+-..
T Consensus 324 P~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g-------d~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 324 PELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG-------DKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh-------hHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 9999998652 23455556555554443211 1123344444322 1238889999999999998764
Q ss_pred c--cchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHH-cCCHHHHHHHH--hcCCcHHHHHHHHH
Q 003227 675 E--ANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE-EGGVPALVHLC--SSSGSKMARFMAAL 749 (837)
Q Consensus 675 ~--~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~-~~~i~~L~~ll--~~~~~~~~~~~a~~ 749 (837)
+ ..+..++ ..++|.+..++.++.--++..++|+++.++.+.. .++. .+-++..+..+ .-.+.|.+.....+
T Consensus 397 p~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw 472 (858)
T COG5215 397 PCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSW 472 (858)
T ss_pred ccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHH
Confidence 3 3333333 3578888888888888899999999999986321 1111 22222222211 11233556677778
Q ss_pred HHHHhhCCCC
Q 003227 750 ALAYMFDGRM 759 (837)
Q Consensus 750 aL~~l~~~~~ 759 (837)
+..++...-+
T Consensus 473 ~~~nlv~h~a 482 (858)
T COG5215 473 RKENLVDHIA 482 (858)
T ss_pred HHHhHHHhhh
Confidence 8777766444
No 123
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.91 E-value=0.00069 Score=71.87 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=182.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhccChHHH---HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccch-HH
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVA---KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK-GA 505 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~ 505 (837)
+..++..|++..+.++..|+...+.++.--.++ ..+...|. .|.+-|....+++.-..+.+++.+......+ -+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 446678889999999999999998887522222 22333332 2344556678888888887777776532211 11
Q ss_pred HHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CC---chHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003227 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DK---CSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (837)
Q Consensus 506 l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~---~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (837)
-.-.|.+|.|..+|++ ....+..+....++.++.. ++ .++.+. +.--|+.+|.+.+ .+++++|...+..
T Consensus 684 pPi~~ilP~ltPILrn---kh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~n-KeiRR~A~~tfG~ 756 (975)
T COG5181 684 PPISGILPSLTPILRN---KHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWN-KEIRRNATETFGC 756 (975)
T ss_pred CchhhccccccHhhhh---hhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhh-HHHHHhhhhhhhh
Confidence 1234678999999975 7788999999999999974 33 234332 3455778888775 8999999999999
Q ss_pred HhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHc-CCHHHHHHHHhhcCCCCHHH
Q 003227 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA-GGVEALVVLAQSCSNASPGL 660 (837)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~-g~i~~L~~ll~~~~~~~~~v 660 (837)
++.. +.-.+++..|++-|+..+...+....-++.-. .+. |-...|-.++.+..+++..+
T Consensus 757 Is~a----------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iV----------ae~cgpfsVlP~lm~dY~TPe~nV 816 (975)
T COG5181 757 ISRA----------IGPQDVLDILLNNLKVQERQQRVCTSVAISIV----------AEYCGPFSVLPTLMSDYETPEANV 816 (975)
T ss_pred HHhh----------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhh----------HhhcCchhhHHHHHhcccCchhHH
Confidence 9863 11234555555555554433333322222222 222 33344444444434578888
Q ss_pred HHHHHHHHHhcccC--ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhc-
Q 003227 661 QERAAGALWGLSVS--EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSS- 737 (837)
Q Consensus 661 ~~~A~~~L~~l~~~--~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~- 737 (837)
|.-.+.+++.+-.. ...+..+ ....|.|-+.|.+.++.-+..|...+.+++.++.. .|..+..+++++-
T Consensus 817 QnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g------tg~eda~IHLlNll 888 (975)
T COG5181 817 QNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG------TGDEDAAIHLLNLL 888 (975)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC------cccHHHHHHHHHHh
Confidence 88888888876542 1112211 12345566778888999999999999999886442 2444455555442
Q ss_pred -----CCcHHHHHHHHHHHHHhhC
Q 003227 738 -----SGSKMARFMAALALAYMFD 756 (837)
Q Consensus 738 -----~~~~~~~~~a~~aL~~l~~ 756 (837)
..+|++...-.+.+..+..
T Consensus 889 wpNIle~sPhvi~~~~Eg~e~~~~ 912 (975)
T COG5181 889 WPNILEPSPHVIQSFDEGMESFAT 912 (975)
T ss_pred hhhccCCCcHHHHHHHHHHHHHHH
Confidence 3457777777776666654
No 124
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.88 E-value=0.019 Score=62.77 Aligned_cols=224 Identities=17% Similarity=0.085 Sum_probs=143.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCch---HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhcc
Q 003227 523 SSGGDGVLERAAGALANLAADDKCS---MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~~~~~---~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 599 (837)
.+.++.++.+|+..++.++.--..+ +.+...|.| |.+.+... ++++.-..+++|..+...-. .. +..---.
T Consensus 809 nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee-ypEvLgsILgAikaI~nvig-m~--km~pPi~ 882 (1172)
T KOG0213|consen 809 NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIG-MT--KMTPPIK 882 (1172)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhcc-cc--ccCCChh
Confidence 5678889999998888887633222 223333443 56666655 48888777777777654210 00 1111135
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh-h---hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-
Q 003227 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDD-R---NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS- 674 (837)
Q Consensus 600 ~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~---~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~- 674 (837)
+.+|.|...|++.++.++++++..+..++... + .|+++. .---|+++|.+ -+.++|.+|...++.++..
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLka---hkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKA---HKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHH---HHHHHHHHHHhhhhHHHHhc
Confidence 78999999999999999999999999888763 2 255542 23456777776 7889999999988888732
Q ss_pred -cc----------------c------hhhhh-c-cC---ChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcC
Q 003227 675 -EA----------------N------CIAIG-R-EG---GVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEG 726 (837)
Q Consensus 675 -~~----------------~------~~~l~-~-~~---~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~ 726 (837)
|. + ...++ + +| .+|.|+.--+.++..||...++++..|...-.....=.=..
T Consensus 957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiya 1036 (1172)
T KOG0213|consen 957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYA 1036 (1172)
T ss_pred CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH
Confidence 21 0 01111 1 12 34555555566778899999999999886332221111123
Q ss_pred CHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 727 GVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 727 ~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
..|.|.+.|-+.+ ..-|..|..++..++-+.+
T Consensus 1037 v~PlleDAlmDrD-~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1037 VTPLLEDALMDRD-LVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred hhHHHHHhhcccc-HHHHHHHHHHHHHHhcCCC
Confidence 4566667776654 6678888899998887754
No 125
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.88 E-value=0.0036 Score=70.11 Aligned_cols=327 Identities=15% Similarity=0.084 Sum_probs=171.4
Q ss_pred CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccCh--HHHHHHHHcC
Q 003227 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA--KVAKAVAEEG 469 (837)
Q Consensus 392 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g 469 (837)
++-.+..|+.+++.++...-.. .. .-.-..+++.+...++......+...+.++..+..+. .......+.
T Consensus 622 nEiTRl~AvkAlt~Ia~S~l~i-~l------~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~- 693 (1233)
T KOG1824|consen 622 NEITRLTAVKALTLIAMSPLDI-DL------SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA- 693 (1233)
T ss_pred chhHHHHHHHHHHHHHhcccee-eh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-
Confidence 3445667777777766433221 10 1122345677788887777777777777776665421 111111111
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh----c--C
Q 003227 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA----A--D 543 (837)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~----~--~ 543 (837)
.+..+..++...+..+.+.|...|..++......-.-...-.++.++.++++ +-++-.|..++.++- . .
T Consensus 694 vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S-----pllqg~al~~~l~~f~alV~t~~ 768 (1233)
T KOG1824|consen 694 VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS-----PLLQGGALSALLLFFQALVITKE 768 (1233)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC-----ccccchHHHHHHHHHHHHHhcCC
Confidence 2344445556677778888888888887655444333444456666666642 222222222221111 0 0
Q ss_pred CCc----------------------hHH----------HHh------cCcHHHHHHHHh-cCCCHHHHHHHHHHHHHHhc
Q 003227 544 DKC----------------------SME----------VAL------AGGVHALVMLAR-SCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 544 ~~~----------------------~~~----------l~~------~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~ 584 (837)
++. +++ +.. ......|+.-+. ...+..++..|.-.++.+..
T Consensus 769 ~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr 848 (1233)
T KOG1824|consen 769 PDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGR 848 (1233)
T ss_pred CCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhcc
Confidence 000 000 000 011223333222 23345666677777777766
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERA 664 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A 664 (837)
+.+..+ ..+.-..+++.+.+++++++.+|..||++++...-. ..++.+++...+ .+....+--.+
T Consensus 849 ~~~~s~-------~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~-------~yLpfil~qi~s-qpk~QyLLLhS 913 (1233)
T KOG1824|consen 849 RKDLSP-------QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP-------KYLPFILEQIES-QPKRQYLLLHS 913 (1233)
T ss_pred CCCCCc-------chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH-------hHHHHHHHHHhc-chHhHHHHHHH
Confidence 533222 345556788889999999999999999999874211 134444444443 11112222222
Q ss_pred HHHHHhcccCccchhhhhccCChHHHHHHh----ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCc
Q 003227 665 AGALWGLSVSEANCIAIGREGGVAPLIALA----RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGS 740 (837)
Q Consensus 665 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL----~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~ 740 (837)
..-....++.... ...++.+..+| ....+.+|...+++|+.|+.... +..+|.|-..+.++.
T Consensus 914 lkevi~~~svd~~------~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep-------esLlpkL~~~~~S~a- 979 (1233)
T KOG1824|consen 914 LKEVIVSASVDGL------KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP-------ESLLPKLKLLLRSEA- 979 (1233)
T ss_pred HHHHHHHhccchh------hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh-------HHHHHHHHHHhcCCC-
Confidence 2222221111111 11334444444 44456678888888988876332 235777878887764
Q ss_pred HHHHHHHHHHHHHhhCCCCc
Q 003227 741 KMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 741 ~~~~~~a~~aL~~l~~~~~~ 760 (837)
+..|..+..|......+++.
T Consensus 980 ~~~rs~vvsavKfsisd~p~ 999 (1233)
T KOG1824|consen 980 SNTRSSVVSAVKFSISDQPQ 999 (1233)
T ss_pred cchhhhhhheeeeeecCCCC
Confidence 67777777777766666553
No 126
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00015 Score=75.67 Aligned_cols=238 Identities=16% Similarity=0.104 Sum_probs=160.2
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC-
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~- 458 (837)
.++.|+++|..++..+.-.+...++++...-.. ....+.+.|.|..|+.++.+.|..+|....|.|+.+..+
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn-------L~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSN-------LGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccc-------hHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 358999999877666666777788886644332 245788999999999999999999999999999998874
Q ss_pred -hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc----cchHHHHhhCCHH----HHHHHHHhhCCCCHHH
Q 003227 459 -AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE----EHKGAIADAGGVK----ALVDLIFKWSSGGDGV 529 (837)
Q Consensus 459 -~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~----~~~~~l~~~g~i~----~L~~lL~~~~~~~~~~ 529 (837)
...+-++...-|+..++.+.++++-.++++...+|.|++.+. ..+..+.+..-.. .|++.++ ..+|-.
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e---~~np~~ 581 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYE---ENNPME 581 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHH---hcCchh
Confidence 344556677778999999999999999999999999999743 2333333333333 3444443 355555
Q ss_pred HHHHHHHHHHhhcCCCchHHHH-hc-CcHHHHHHHHh----c-----C--------------------------------
Q 003227 530 LERAAGALANLAADDKCSMEVA-LA-GGVHALVMLAR----S-----C-------------------------------- 566 (837)
Q Consensus 530 ~~~a~~~L~~l~~~~~~~~~l~-~~-g~i~~L~~ll~----~-----~-------------------------------- 566 (837)
....+.+|.+++..++....++ +. ..+..+...+. . +
T Consensus 582 i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p 661 (743)
T COG5369 582 ILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTP 661 (743)
T ss_pred hhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCC
Confidence 5666888888887655544433 22 23333333221 0 0
Q ss_pred -----------CCHHHHHHHHHHHHHHhcCCCCCC------cccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhh
Q 003227 567 -----------KFEGVQEQAARALANLAAHGDSNS------NNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (837)
Q Consensus 567 -----------~~~~~~~~a~~~L~~l~~~~~~~~------~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 627 (837)
++.+...+..|.+.|+.+..+..+ +...++.+.|.-+.+...-.++++.+++.+-.+|.++
T Consensus 662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 112344456666666665433333 3344555666667777766777788888888888765
No 127
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0054 Score=64.86 Aligned_cols=356 Identities=13% Similarity=0.001 Sum_probs=209.6
Q ss_pred HHHHhhhcCC-HHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHH-hccCh
Q 003227 383 LLLSLMQSTQ-EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIAN-LSVNA 459 (837)
Q Consensus 383 ~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~-l~~~~ 459 (837)
.++.....+. ...+..+..+++..|.... |+-....-+.-.+......++. .+..+|..|+.+|.+ +-.
T Consensus 137 ~mv~nvg~eqp~~~k~~sl~~~gy~ces~~------Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f-- 208 (858)
T COG5215 137 EMVRNVGDEQPVSGKCESLGICGYHCESEA------PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF-- 208 (858)
T ss_pred HHHHhccccCchHhHHHHHHHHHHHhhccC------HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH--
Confidence 3444444443 4567888889998885433 2222122222222334445555 478889999999987 321
Q ss_pred HHHHHHHHcCC----HHHHHHHHhcCCHHHHHHHHHHHHhhccCc-cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHH
Q 003227 460 KVAKAVAEEGG----INILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (837)
Q Consensus 460 ~~~~~i~~~g~----i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (837)
.+..+..++- ++..++.-+.++.+++..|..+|..+..-. ..-+.+.+........+.+ .+.++++...|+
T Consensus 209 -v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m---ks~nd~va~qav 284 (858)
T COG5215 209 -VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM---KSQNDEVAIQAV 284 (858)
T ss_pred -HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHH
Confidence 2222222222 444555667789999999999999987522 2222333332333344555 458888988888
Q ss_pred HHHHHhhcCC-CchHH-------------H---HhcCcHHHHHHHHhc------CCCHHHHHHHHHHHHHHhcCCCCCCc
Q 003227 535 GALANLAADD-KCSME-------------V---ALAGGVHALVMLARS------CKFEGVQEQAARALANLAAHGDSNSN 591 (837)
Q Consensus 535 ~~L~~l~~~~-~~~~~-------------l---~~~g~i~~L~~ll~~------~~~~~~~~~a~~~L~~l~~~~~~~~~ 591 (837)
.--..++..+ +.--. + .-..++|.|+.+|.. +++-.+...|..+|.-.+.. ..
T Consensus 285 EfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~----~g 360 (858)
T COG5215 285 EFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL----KG 360 (858)
T ss_pred HHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH----hh
Confidence 7665666421 11000 0 112468889998875 23345566777777766652 11
Q ss_pred ccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChh--hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 003227 592 NSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALW 669 (837)
Q Consensus 592 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~ 669 (837)
..+. ..++..+-+-+++++..-++.|+.+++.+-..+. .+..++ ..+++.+..++.+ ...-++..++|+++
T Consensus 361 --d~i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D---~~l~vk~ttAwc~g 433 (858)
T COG5215 361 --DKIM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSD---SCLWVKSTTAWCFG 433 (858)
T ss_pred --hHhH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhccc---ceeehhhHHHHHHH
Confidence 1111 1244444455788888899999999998876532 233333 4578888888876 77889999999999
Q ss_pred hcccCccchhhhhccCChHHHHHHhc---cCCHHHHHHHHHHHHHHcCCcccH----HHHH-H--cCCHHHHHHHHhc-C
Q 003227 670 GLSVSEANCIAIGREGGVAPLIALAR---SEAEDVHETAAGALWNLAFNPGNA----LRIV-E--EGGVPALVHLCSS-S 738 (837)
Q Consensus 670 ~l~~~~~~~~~l~~~~~i~~L~~lL~---s~~~~v~~~a~~~L~~l~~~~~~~----~~i~-~--~~~i~~L~~ll~~-~ 738 (837)
.++..-. ..+-.+|-++..++.+. .+.+.+..++.|...|+..+-... ...+ . ...+..|++.-.- .
T Consensus 434 ~iad~va--~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~ 511 (858)
T COG5215 434 AIADHVA--MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL 511 (858)
T ss_pred HHHHHHH--HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc
Confidence 9886421 12333444544443321 357889999999999998742211 1111 1 1112233322211 3
Q ss_pred CcHHHHHHHHHHHHHhhCCCCcchh
Q 003227 739 GSKMARFMAALALAYMFDGRMDEFA 763 (837)
Q Consensus 739 ~~~~~~~~a~~aL~~l~~~~~~~~~ 763 (837)
+....|..+..+|+.+..-.++.+.
T Consensus 512 Ne~n~R~s~fsaLgtli~~~~d~V~ 536 (858)
T COG5215 512 NESNLRVSLFSALGTLILICPDAVS 536 (858)
T ss_pred cchhHHHHHHHHHHHHHhhcchhHH
Confidence 3456899999999999888887654
No 128
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0026 Score=60.92 Aligned_cols=225 Identities=21% Similarity=0.138 Sum_probs=146.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhccCccchHHHH
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~ 507 (837)
+..+.+...+++...+...+.+|+.+...+ +++.++..+.+ ..+-++..|..+|+.+... +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~----------Av~~l~~vl~desq~pmvRhEAaealga~~~~-~------ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQDED----------AVPVLVEVLLDESQEPMVRHEAAEALGAIGDP-E------ 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhccch----------hhHHHHHHhcccccchHHHHHHHHHHHhhcch-h------
Confidence 555666665555555556666666555433 68888888765 4677888888888887732 1
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchH-----HH--------HhcCcHHHHHHHHhcCCCHHH-HH
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSM-----EV--------ALAGGVHALVMLARSCKFEGV-QE 573 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~l--------~~~g~i~~L~~ll~~~~~~~~-~~ 573 (837)
.++.+-+..+ +.-.++++.+..++..+-+...... .. ...+-+..+-..+.+.+.+.. ++
T Consensus 101 ---~~~~l~k~~~---dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 101 ---SLEILTKYIK---DPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred ---hHHHHHHHhc---CCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence 2333333331 2444566666666665543111100 00 112235555554544432332 34
Q ss_pred HHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhc
Q 003227 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSC 653 (837)
Q Consensus 574 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~ 653 (837)
.|.-.|+|+.. +..|..|+.-+..++.-.|-.++.+++.|-.. -+|+.|.+.|.+
T Consensus 175 ~amF~LRn~g~--------------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d- 229 (289)
T KOG0567|consen 175 RAMFYLRNIGT--------------EEAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLD- 229 (289)
T ss_pred hhhhHhhccCc--------------HHHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHh-
Confidence 56666666543 35678888888888888899999999887543 368888888876
Q ss_pred CCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHH
Q 003227 654 SNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNL 712 (837)
Q Consensus 654 ~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l 712 (837)
..+++.+|..|+.+|+.++ +..+++.|.+.+.+..+-|++.|..+|--+
T Consensus 230 ~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 5689999999999999854 444788899999988888888888777654
No 129
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0046 Score=66.63 Aligned_cols=218 Identities=20% Similarity=0.111 Sum_probs=135.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC--CCCCcc
Q 003227 515 LVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG--DSNSNN 592 (837)
Q Consensus 515 L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~ 592 (837)
++.+. ++.+..++.+|+..|..|+..-...+.+ ....++.+.+.. ..|+.+|+..+.-.+... +...++
T Consensus 203 l~~~~---~~~D~~Vrt~A~eglL~L~eg~kL~~~~-----Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 203 LIYLE---HDQDFRVRTHAVEGLLALSEGFKLSKAC-----YSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHh---cCCCcchHHHHHHHHHhhcccccccHHH-----HHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchh
Confidence 55555 5677778888888887777644333333 455666777654 778877766665554432 111111
Q ss_pred cchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC------------------------------------------
Q 003227 593 SAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD------------------------------------------ 630 (837)
Q Consensus 593 ~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~------------------------------------------ 630 (837)
...-....+...+.+.+.+.+-.+|-.|+.+|+.+-.-
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 11111233445555666666666666666555443111
Q ss_pred ---------hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccCCHH
Q 003227 631 ---------DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAED 700 (837)
Q Consensus 631 ---------~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~ 700 (837)
++...-|+.+|+-..++.-+++ +-.+||.+|+..++.++.+ |.... .++.-|++++.++..+
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV 425 (823)
T ss_pred cccCchhhccccccccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence 0112234555666777777776 7789999999999999975 54432 2678899999999999
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 003227 701 VHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (837)
Q Consensus 701 v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~ 755 (837)
|+..|..+|..++.+-..+ +.-++.+++.|.+. ++.+|+..-..|.+..
T Consensus 426 VRL~ai~aL~~Is~~l~i~-----eeql~~il~~L~D~-s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLAIR-----EEQLRQILESLEDR-SVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHHHHHHHHHHheec-----HHHHHHHHHHHHhc-CHHHHHHHHHHHHhcC
Confidence 9999999999998763333 33455666666654 3666666665555543
No 130
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.79 E-value=3.5e-05 Score=52.47 Aligned_cols=41 Identities=39% Similarity=0.418 Sum_probs=38.4
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 003227 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~ 498 (837)
+++++..+++.|+++.|+++|+++++.+++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999973
No 131
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.77 E-value=5.1e-05 Score=51.68 Aligned_cols=40 Identities=38% Similarity=0.437 Sum_probs=36.8
Q ss_pred hhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 003227 418 CGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 418 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (837)
+++++.+++.|++|.|+++|++++++++..|+++|+|++.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999999999999999873
No 132
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=2.5e-05 Score=71.60 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHh---hCCCCCCEeeccC
Q 003227 165 RITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL---GNVLSVRFLSVAG 236 (837)
Q Consensus 165 ~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l---~~l~~L~~L~ls~ 236 (837)
.|..+|+..+- .++.++.|.+.+|.++.|.++..++...|+|+.|++++|+.+|+.++ ..+++|+.|.+++
T Consensus 112 ~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 112 SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 44455555543 25555555555555555555555555445555555555555555443 2344555555544
No 133
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.0078 Score=57.80 Aligned_cols=248 Identities=21% Similarity=0.132 Sum_probs=153.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCC
Q 003227 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS 524 (837)
Q Consensus 445 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~ 524 (837)
+..|+..|.++.... .+..+.+...+++...+..++..|+.... ..+++.|+..+.. .+
T Consensus 22 r~rALf~Lr~l~~~~----------~i~~i~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~d-es 80 (289)
T KOG0567|consen 22 RFRALFNLRNLLGPA----------AIKAITKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLD-ES 80 (289)
T ss_pred HHHHHHhhhccCChH----------HHHHHHHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcc-cc
Confidence 445666666555432 25555555555555566666667766654 3489999999976 66
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCC-cccchh-------
Q 003227 525 GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS-NNSAVG------- 596 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~------- 596 (837)
..+.++..|..+|+.+. +++ .++.+-++.+++. ..+++.+..++..+-+.+.... .+....
T Consensus 81 q~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp~-~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~ 149 (289)
T KOG0567|consen 81 QEPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDPC-KEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAP 149 (289)
T ss_pred cchHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCCc-cccchHHHHHHHHHHHhhccccccccCccccCCCCC
Confidence 77888899999999876 332 3455555664443 6777777778877766421000 000000
Q ss_pred -hccchHHHHHHHcCCCCH-H-HHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc
Q 003227 597 -QEAGALEALVQLTRSPHE-G-VRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 597 -~~~~~i~~L~~lL~~~~~-~-~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
...+.+..+-..|.+.+. . -++.|.-.|+|+... .+|..++.-+.. ++.-.|..++.+++.+-
T Consensus 150 p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~---~SalfrhEvAfVfGQl~- 215 (289)
T KOG0567|consen 150 PANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLAD---DSALFRHEVAFVFGQLQ- 215 (289)
T ss_pred ccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhccc---chHHHHHHHHHHHhhcc-
Confidence 122334444444433322 2 233344444444321 134444555544 78889999999998843
Q ss_pred CccchhhhhccCChHHHHHHhcc--CCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHH
Q 003227 674 SEANCIAIGREGGVAPLIALARS--EAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALAL 751 (837)
Q Consensus 674 ~~~~~~~l~~~~~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL 751 (837)
..-.++.|.+.|.+ .++.||..|+.||..++. +..++.|.+.+.+.. +.+++.+.-+|
T Consensus 216 ---------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~-~vv~esc~val 275 (289)
T KOG0567|consen 216 ---------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE-RVVRESCEVAL 275 (289)
T ss_pred ---------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH-HHHHHHHHHHH
Confidence 33478888888854 568899999999998873 456778888888764 88999988888
Q ss_pred HHhhCCC
Q 003227 752 AYMFDGR 758 (837)
Q Consensus 752 ~~l~~~~ 758 (837)
.-+-..+
T Consensus 276 dm~eyen 282 (289)
T KOG0567|consen 276 DMLEYEN 282 (289)
T ss_pred HHHHHhc
Confidence 7765443
No 134
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.70 E-value=0.0018 Score=63.41 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=153.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhC-CHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhc-
Q 003227 476 VLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAG-GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALA- 553 (837)
Q Consensus 476 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g-~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~- 553 (837)
++++.-++-.+-.|+.++.++...++.|..+-..+ .-..+++++++ +-+..+++.+.+-++|-++.+++..+.+-+.
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n-~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~ 234 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQN-YVGVKQLQYNSLIIIWILTFSKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444455677889999999998887776665443 45678888876 5567889999999999999988877555444
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC--CCHHHHHHHHHH---HH---
Q 003227 554 GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS--PHEGVRQEAAGA---LW--- 625 (837)
Q Consensus 554 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a~~~---L~--- 625 (837)
..+..++++.+....+.+.+.+++++.|++...+ .......+...++.+..--++.. .|++++...-.+ |-
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~p-K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSP-KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 5678888888876557888999999999987321 12223333333343433333332 255544332111 10
Q ss_pred -hhcCC------------------------hhhHHHHHH--cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc-cCccc
Q 003227 626 -NLSFD------------------------DRNREAIAA--AGGVEALVVLAQSCSNASPGLQERAAGALWGLS-VSEAN 677 (837)
Q Consensus 626 -~Ls~~------------------------~~~~~~l~~--~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~-~~~~~ 677 (837)
.++.. ..|...+.+ +..+..|..+++. +.++. .-.-|+.-+..+. ..|+.
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~-n~~nt-~i~vAc~Di~~~Vr~~PE~ 391 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQS-NNPNT-WICVACSDIFQLVRASPEI 391 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhc-CCCCc-eEeeeHhhHHHHHHhCchH
Confidence 01110 122233333 3468888999987 22332 2333445555555 45899
Q ss_pred hhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 678 CIAIGREGGVAPLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 678 ~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
+..+.+.|+-+.+++++.+++++|+..|+.++..+.
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 135
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.00079 Score=75.85 Aligned_cols=233 Identities=16% Similarity=0.084 Sum_probs=169.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-hcCCCchH
Q 003227 471 INILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL-AADDKCSM 548 (837)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l-~~~~~~~~ 548 (837)
+|.+++.|-++-..+ +|+..|+.... .+-....-...|..|..+++|++ ...+++-.-+.+=..+ +.|+.++.
T Consensus 474 LPiVLQVLLSQvHRl--RAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS---~a~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 474 LPIVLQVLLSQVHRL--RALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS---SARELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred cchHHHHHHHHHHHH--HHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc---chHhhhhhHHHHHHHHHhcCchhHH
Confidence 566677665544443 46666666553 45555566678899999999963 6666665555444444 44888999
Q ss_pred HHHhcCcHHHHHHHHhcC-C-CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC-CHHHHHHHHHHHH
Q 003227 549 EVALAGGVHALVMLARSC-K-FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP-HEGVRQEAAGALW 625 (837)
Q Consensus 549 ~l~~~g~i~~L~~ll~~~-~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~ 625 (837)
.+++.++-...++.+..+ . +++-+..|+-+|..++.+ ....++...+.+.+...+..|.++ .+-++.+++-+|.
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n---f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN---FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLG 625 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc---cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999987776677777652 2 257788899999999986 666677777888899888999885 6889999999999
Q ss_pred hhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-----ccchhh-----------hhccCCh-
Q 003227 626 NLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-----EANCIA-----------IGREGGV- 687 (837)
Q Consensus 626 ~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-----~~~~~~-----------l~~~~~i- 687 (837)
.|-.+ +..|..=.+.++.+.|+.+|.+ +.++||.+|+.||..+-.+ ++.... +.-+..+
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD---~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSD---PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcC---ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 99887 6666665677899999999987 9999999999999998753 111111 1111222
Q ss_pred ---HHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 688 ---APLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 688 ---~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
..++.+++++++-++...+.+|..+..
T Consensus 703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 703 KGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 367777889999999998888888764
No 136
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0078 Score=66.26 Aligned_cols=323 Identities=15% Similarity=0.072 Sum_probs=190.5
Q ss_pred HHHHHhhhcCCHHHHHHHHH-HhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch
Q 003227 382 GLLLSLMQSTQEDVQERAAT-GLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (837)
..|..||.+..+..+..|.. .++.++.+.+.. ...|.+|+...+.|.++++..---|...+. ++
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS--------------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqp 103 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS--------------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQP 103 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH--------------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCC
Confidence 46788887766666666654 566655544321 235678888888999998876666666665 33
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHh-hCCCCHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLERAAGALA 538 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~-~~~~~~~~~~~a~~~L~ 538 (837)
+.. .=.|..+-+-|+++++.+|..|+++|..+--.- ..|.++-.++. ..+..+-+++.|+.++-
T Consensus 104 dLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRvp~----------IaPI~llAIk~~~~D~s~yVRk~AA~AIp 168 (968)
T KOG1060|consen 104 DLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRVPM----------IAPIMLLAIKKAVTDPSPYVRKTAAHAIP 168 (968)
T ss_pred Cce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh----------HHHHHHHHHHHHhcCCcHHHHHHHHHhhH
Confidence 211 113677778889999999999999988775431 22333333332 14567889999999999
Q ss_pred Hhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 539 NLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 539 ~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
.|-. +++.+.++ +..+-.+|.+.+ +.|.-.|+.+...+|-. +.+.+ .+-...+.++|.+-++--|
T Consensus 169 KLYsLd~e~k~qL-----~e~I~~LLaD~s-plVvgsAv~AF~evCPe------rldLI--HknyrklC~ll~dvdeWgQ 234 (968)
T KOG1060|consen 169 KLYSLDPEQKDQL-----EEVIKKLLADRS-PLVVGSAVMAFEEVCPE------RLDLI--HKNYRKLCRLLPDVDEWGQ 234 (968)
T ss_pred HHhcCChhhHHHH-----HHHHHHHhcCCC-CcchhHHHHHHHHhchh------HHHHh--hHHHHHHHhhccchhhhhH
Confidence 9887 56655544 333445566654 77777888887777642 22222 1334556666655444334
Q ss_pred HHHHHHHHhhcCCh---hhH----------------------HHHHHcCC----HHHHHHHHhhcCCCCHHHHHHHHHHH
Q 003227 618 QEAAGALWNLSFDD---RNR----------------------EAIAAAGG----VEALVVLAQSCSNASPGLQERAAGAL 668 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~---~~~----------------------~~l~~~g~----i~~L~~ll~~~~~~~~~v~~~A~~~L 668 (837)
...+..|...|.+. +.. .-+...-- ++..-.++.+ .++.+..+++.+.
T Consensus 235 vvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S---~n~sVVmA~aql~ 311 (968)
T KOG1060|consen 235 VVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS---RNPSVVMAVAQLF 311 (968)
T ss_pred HHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc---CCcHHHHHHHhHH
Confidence 44444444443321 100 00000111 2233345665 8899999999999
Q ss_pred HhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCC-----------------cccHH---------HH
Q 003227 669 WGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN-----------------PGNAL---------RI 722 (837)
Q Consensus 669 ~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~-----------------~~~~~---------~i 722 (837)
+.++...+. .+.+++|+++|++ +.++|...+..+..++.- +.... .+
T Consensus 312 y~lAP~~~~------~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~L 384 (968)
T KOG1060|consen 312 YHLAPKNQV------TKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNL 384 (968)
T ss_pred HhhCCHHHH------HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHH
Confidence 999865432 2357889998875 456666666666666531 11111 22
Q ss_pred HHcCCHHHHHH----HHhcCCcHHHHHHHHHHHHHhhCCC
Q 003227 723 VEEGGVPALVH----LCSSSGSKMARFMAALALAYMFDGR 758 (837)
Q Consensus 723 ~~~~~i~~L~~----ll~~~~~~~~~~~a~~aL~~l~~~~ 758 (837)
+.++.+..+++ .+.+.+ ..+...|.+|++.++...
T Consensus 385 a~esni~~ILrE~q~YI~s~d-~~faa~aV~AiGrCA~~~ 423 (968)
T KOG1060|consen 385 ANESNISEILRELQTYIKSSD-RSFAAAAVKAIGRCASRI 423 (968)
T ss_pred hhhccHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHhh
Confidence 34454554443 334444 346677777777776543
No 137
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0017 Score=71.51 Aligned_cols=392 Identities=15% Similarity=0.080 Sum_probs=223.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (837)
+.+++.+...|-+.+.-.-..+.+-+..... ...+++..++.=..++++.+|..|++.++.+.-+.-.
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~------------~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ 119 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPD------------LAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT 119 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCch------------HHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH
Confidence 6777778777878887788888876654433 2234556666666678999999888888776654311
Q ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 003227 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (837)
Q Consensus 462 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~ 541 (837)
+. ...++.+.+++.++.++..|+....++-. ...+...+.|.++.|-+++. +.++.+..+|+.+|..+.
T Consensus 120 -ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~---D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 120 -EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLS---DSNPMVVANALAALSEIH 188 (734)
T ss_pred -HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 11 35788889999999999998888777764 34455667788899999994 588899999999999998
Q ss_pred cCCCc-hHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHH
Q 003227 542 ADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEA 620 (837)
Q Consensus 542 ~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a 620 (837)
..+.. -........+..++..+...+ +- .-+.+|.+++..-...+ .+ ....+..+...|.+.++.+...+
T Consensus 189 e~~~~~~~~~l~~~~~~~lL~al~ec~-EW---~qi~IL~~l~~y~p~d~--~e---a~~i~~r~~p~Lqh~n~avvlsa 259 (734)
T KOG1061|consen 189 ESHPSVNLLELNPQLINKLLEALNECT-EW---GQIFILDCLAEYVPKDS--RE---AEDICERLTPRLQHANSAVVLSA 259 (734)
T ss_pred HhCCCCCcccccHHHHHHHHHHHHHhh-hh---hHHHHHHHHHhcCCCCc--hh---HHHHHHHhhhhhccCCcceEeeh
Confidence 74432 111111123444444444332 22 23334444444311111 11 12345555566666666666666
Q ss_pred HHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-cc-----------------------
Q 003227 621 AGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EA----------------------- 676 (837)
Q Consensus 621 ~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~----------------------- 676 (837)
...+.++...-.......-....++|+.++.+ ++ +++.-|+.=+.-+-.. |.
T Consensus 260 vKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~---~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eK 335 (734)
T KOG1061|consen 260 VKVILQLVKYLKQVNELLFKKVAPPLVTLLSS---ES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEK 335 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccceeeecc---cc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHH
Confidence 66666665543222222222344555555543 22 4443332222111100 10
Q ss_pred --chhhhhccCChHH----HHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHH
Q 003227 677 --NCIAIGREGGVAP----LIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALA 750 (837)
Q Consensus 677 --~~~~l~~~~~i~~----L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~a 750 (837)
....+....-++. +...-...+.+....+.+++++++...+.. ++.++.|++++.... +.+...+...
T Consensus 336 leil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~-~yvvqE~~vv 409 (734)
T KOG1061|consen 336 LEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKV-DYVVQEAIVV 409 (734)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcc-cceeeehhHH
Confidence 0011111111222 222223456788888999999988633322 567889999999765 5566677888
Q ss_pred HHHhhCCCCcchhhhccCccCcccccchhHHHHHHH------------------HHHHHHHHhcCChhHHHHHHhccchh
Q 003227 751 LAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMAL------------------KHIEAFVLTFSDPQAFATAAASSAPA 812 (837)
Q Consensus 751 L~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~------------------~~l~~~~l~~~~~~~~~~~~~~~a~~ 812 (837)
+..+.+..|+.+..+.+.+-....+++...+ |.|+ +.+.+- ..++.++||....++..-.
T Consensus 410 i~dilRkyP~~~~~vv~~l~~~~~sl~epea-k~amiWilg~y~~~i~~a~elL~~f~en-~~dE~~~Vql~LLta~ik~ 487 (734)
T KOG1061|consen 410 IRDILRKYPNKYESVVAILCENLDSLQEPEA-KAALIWILGEYAERIENALELLESFLEN-FKDETAEVQLELLTAAIKL 487 (734)
T ss_pred HHhhhhcCCCchhhhhhhhcccccccCChHH-HHHHHHHHhhhhhccCcHHHHHHHHHhh-cccchHHHHHHHHHHHHHH
Confidence 8888888776655444433333333322222 1122 122222 3455577777776666554
Q ss_pred hhHHH
Q 003227 813 ALTQV 817 (837)
Q Consensus 813 ~l~~~ 817 (837)
.+.+.
T Consensus 488 Fl~~p 492 (734)
T KOG1061|consen 488 FLKKP 492 (734)
T ss_pred HhcCC
Confidence 45444
No 138
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0015 Score=70.28 Aligned_cols=252 Identities=19% Similarity=0.109 Sum_probs=165.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-C--
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-N-- 458 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~-- 458 (837)
.-+..+-++.|..++..|+.+|..|..+ -.++ +. .....++.|++++..+|..|+..+.-.+. .
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~------~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLS------KA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccc--cccc------HH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 3477777888999999999998876641 1111 11 24578899999999999998776655443 1
Q ss_pred ---hH-HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHH
Q 003227 459 ---AK-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (837)
Q Consensus 459 ---~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a 533 (837)
.+ ...... ..+...+...+++..-.++-.|+.+|+.+..- ++.-.+..+. .++.-++.. ..-.+..
T Consensus 268 ~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRk----r~ahkrp 338 (823)
T KOG2259|consen 268 PLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRK----RTAHKRP 338 (823)
T ss_pred cccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhh----hhcccch
Confidence 11 112222 22567777888888888898999998887753 2332222222 222222210 0011111
Q ss_pred HHHHHHh--hc------------CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhcc
Q 003227 534 AGALANL--AA------------DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599 (837)
Q Consensus 534 ~~~L~~l--~~------------~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 599 (837)
.....+. ++ +++--..++..|+.-.++.-+++.- -+|+.+|+..++.|+... +.. ..
T Consensus 339 k~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf-~EVR~AAV~Sl~~La~ss---P~F-----A~ 409 (823)
T KOG2259|consen 339 KALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEF-YEVRRAAVASLCSLATSS---PGF-----AV 409 (823)
T ss_pred HHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHH-HHHHHHHHHHHHHHHcCC---CCc-----HH
Confidence 1122222 00 1222345778888889999988765 799999999999999852 211 24
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 600 ~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
..+..|+.++.++.+.+|..|+.+|..++.+-..++ .-++.++..|.+ .++++|++.-..|.+.-
T Consensus 410 ~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~e-----eql~~il~~L~D---~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 410 RALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIRE-----EQLRQILESLED---RSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecH-----HHHHHHHHHHHh---cCHHHHHHHHHHHHhcC
Confidence 678999999999999999999999999988733332 346778888887 88999998877776643
No 139
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=5.2e-05 Score=69.53 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=70.8
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCC
Q 003227 126 NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCP 205 (837)
Q Consensus 126 ~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 205 (837)
.++.++-+++. +..+++..+. .++.|+.|.+. .|.++.|.++..+....|+|+.|++++|+.||+.++..+.+. +
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~-~l~~i~~l~l~--~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l-k 176 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLR-DLRSIKSLSLA--NCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL-K 176 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHh-ccchhhhheec--cccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh-h
Confidence 45667777766 7778887764 48888888885 588888988888888888999999999989999998888864 8
Q ss_pred CccEEEecCCCCCC
Q 003227 206 NLTDIGFLDCLNVD 219 (837)
Q Consensus 206 ~L~~L~l~~~~~~~ 219 (837)
+|+.|++.+-+.+.
T Consensus 177 nLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVA 190 (221)
T ss_pred hhHHHHhcCchhhh
Confidence 88888887754443
No 140
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.64 E-value=0.0046 Score=60.67 Aligned_cols=231 Identities=15% Similarity=0.058 Sum_probs=156.2
Q ss_pred HhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHh-CcHHHHHHHHhc--CChhHHHHHHHHHHHhccChHHH
Q 003227 386 SLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD-GGIRLLLDLAKS--WREGLQSEAAKAIANLSVNAKVA 462 (837)
Q Consensus 386 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~-g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~ 462 (837)
++++.-++-.+..|..++.+++. .++.+..+.-+ .+-..+++.++. ++.++|..++-+++-++.+++..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~--------~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~a 227 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEF--------DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECA 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh--------hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHH
Confidence 34444455567788888887553 34444444333 355678888887 57899999999999999999888
Q ss_pred HHHHHcCC-HHHHHHHHhc-CCHHHHHHHHHHHHhhcc-Cc-cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 463 KAVAEEGG-INILAVLARS-MNRLVAEEAAGGLWNLSV-GE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 463 ~~i~~~g~-i~~L~~lL~~-~~~~~~~~a~~~L~~l~~-~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
+.+-+... +..++++.+. ....+.+.++.++.|+.. .+ ..-..+.-.|.+.+-++.|..-...+++++...-.+=.
T Consensus 228 qdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s 307 (432)
T COG5231 228 QDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRS 307 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 66655543 7777788776 356788889999999886 32 44444555555666666665424445554432211111
Q ss_pred -----------------H-----hhcCCC---------chHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 539 -----------------N-----LAADDK---------CSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 539 -----------------~-----l~~~~~---------~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
. +...|. +...+.+. ..+..|.++++...+......||.-+..+...
T Consensus 308 ~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~ 387 (432)
T COG5231 308 RLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA 387 (432)
T ss_pred HHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh
Confidence 1 111111 22333333 45788999998876444566777778887776
Q ss_pred CCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhh
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 627 (837)
.|+....+...|+=..++.++.+++++++..|+.++..+
T Consensus 388 ---~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 388 ---SPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred ---CchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 788888999999999999999999999999999988654
No 141
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.0016 Score=73.57 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=153.1
Q ss_pred hccchHHHHHHHcCCCCHHHHHHHHHHHH-hhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-
Q 003227 597 QEAGALEALVQLTRSPHEGVRQEAAGALW-NLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS- 674 (837)
Q Consensus 597 ~~~~~i~~L~~lL~~~~~~~~~~a~~~L~-~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~- 674 (837)
...|+.|.++++|++.-.+++.--+-+=. -|+.++.++..+++.++....++.|.+...-+++-|..|+.+|+.++.+
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 35799999999999998887765443333 3677888899999998888888888653345678999999999999987
Q ss_pred ccchhhhhccCChHHHHHHhccC-CHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHH
Q 003227 675 EANCIAIGREGGVAPLIALARSE-AEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 752 (837)
Q Consensus 675 ~~~~~~l~~~~~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~ 752 (837)
+..++...+.+.+..-+..|.++ .+-.+..++.+|..|.. .+..|-.=++.++.+.|+.+|.++ .++||..|.-||+
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHH
Confidence 66777788888888888888875 57899999999999987 566666666788999999999976 5999999999999
Q ss_pred HhhCCCCcch----hhhccCccCcccccchhHHHHHHHHHHHHHHHhcCChhHHHHHHhccchhhhH
Q 003227 753 YMFDGRMDEF----ALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALT 815 (837)
Q Consensus 753 ~l~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~a~~~l~ 815 (837)
.+..+-.+.+ ..+.....-..+....+.........+... +.+..|-|+...+.+.+.....
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~-vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLAL-VSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHH-HhccchHHHHHHHHHHHHHHHh
Confidence 9988643221 122111111111111111111112233443 5666777887766665554443
No 142
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.60 E-value=0.0051 Score=68.97 Aligned_cols=267 Identities=15% Similarity=0.061 Sum_probs=149.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhC
Q 003227 432 LLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAG 510 (837)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g 510 (837)
.|++-+.++|.+.|..|..-|.+=-. +.-.-+.=.+...+..++++|.+.+.+++..|+.+++-|+.- .++ .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK--vke-----~ 81 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK--VKE-----D 81 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh--chH-----H
Confidence 67778889999999998887765222 211111111223478999999999999999999999999842 111 1
Q ss_pred CHHHHHHHHHhh-CCCCHHHHHHHHHHHH-HhhcCCCchHHHHhcCcHHHHHHHHhc-----CCCHHHHHHHHHHHHHHh
Q 003227 511 GVKALVDLIFKW-SSGGDGVLERAAGALA-NLAADDKCSMEVALAGGVHALVMLARS-----CKFEGVQEQAARALANLA 583 (837)
Q Consensus 511 ~i~~L~~lL~~~-~~~~~~~~~~a~~~L~-~l~~~~~~~~~l~~~g~i~~L~~ll~~-----~~~~~~~~~a~~~L~~l~ 583 (837)
-+..+++-|-.. -++.+..+.-..-.|. -++.-+..........+++.+...+.. ++...++..++..|..+-
T Consensus 82 ~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~l 161 (1233)
T KOG1824|consen 82 QLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVL 161 (1233)
T ss_pred HHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence 223333322210 1233434333322222 222222221222223334444444432 223456667777766665
Q ss_pred cCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHH
Q 003227 584 AHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQER 663 (837)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~ 663 (837)
... ...-.- ...+.+..++..+.++-..+++.|+.+|..++..-..-. -.+.++.|++=|.. +..+.....
T Consensus 162 sr~---g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~l---y~~li~~Ll~~L~~--~~q~~~~rt 232 (1233)
T KOG1824|consen 162 SRF---GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDL---YVELIEHLLKGLSN--RTQMSATRT 232 (1233)
T ss_pred Hhh---cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhccCC--CCchHHHHH
Confidence 431 111011 245667777777888888999999999999987522211 11234555555543 233333334
Q ss_pred HHHHHHhcccCccchhhhhccCChHHHHHHh---ccCCHHHHHHHHHHHHHHcC
Q 003227 664 AAGALWGLSVSEANCIAIGREGGVAPLIALA---RSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 664 A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL---~s~~~~v~~~a~~~L~~l~~ 714 (837)
-..+|+.++.....|.----...++.+.+.. ...+++.+++++.++..+-.
T Consensus 233 ~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 233 YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 4555666554333322111234677788888 67889999999999988764
No 143
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.0051 Score=65.03 Aligned_cols=318 Identities=17% Similarity=0.102 Sum_probs=165.8
Q ss_pred hhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhH
Q 003227 365 AESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGL 444 (837)
Q Consensus 365 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 444 (837)
...|++....++ |.|-.++++.-+.++..++.+++.++..+.. ++..+. ++..|-.+|++.....
T Consensus 255 l~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-----~~~~~~-----~vs~L~~fL~s~rv~~ 319 (898)
T COG5240 255 LKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENVG-----SQFVDQ-----TVSSLRTFLKSTRVVL 319 (898)
T ss_pred HHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhccC-----HHHHHH-----HHHHHHHHHhcchHHH
Confidence 345554555544 8888888888888999999999987754421 122222 3557778888899999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCC
Q 003227 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS 524 (837)
Q Consensus 445 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~ 524 (837)
|..|.++|..++.....+-.++ -+.+-.++.+.+..+...|...|..-..+ ++-..+ +..+..++ ++
T Consensus 320 rFsA~Riln~lam~~P~kv~vc----N~evEsLIsd~Nr~IstyAITtLLKTGt~-e~idrL-----v~~I~sfv---hD 386 (898)
T COG5240 320 RFSAMRILNQLAMKYPQKVSVC----NKEVESLISDENRTISTYAITTLLKTGTE-ETIDRL-----VNLIPSFV---HD 386 (898)
T ss_pred HHHHHHHHHHHHhhCCceeeec----ChhHHHHhhcccccchHHHHHHHHHcCch-hhHHHH-----HHHHHHHH---Hh
Confidence 9999999999987321111111 12333455567777777777666554332 222222 22233333 22
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHH
Q 003227 525 GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~ 604 (837)
-++..+.-+..+++.|+-.-+-+... .+..|...|...-.-+....++.++..+.... ++. .+.+++.
T Consensus 387 ~SD~FKiI~ida~rsLsl~Fp~k~~s----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~---p~s-----kEraLe~ 454 (898)
T COG5240 387 MSDGFKIIAIDALRSLSLLFPSKKLS----YLDFLGSSLLQEGGLEFKKYMVDAISDAMEND---PDS-----KERALEV 454 (898)
T ss_pred hccCceEEeHHHHHHHHhhCcHHHHH----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhC---chH-----HHHHHHH
Confidence 34445555566666665432211111 12333332222111344455555555554431 111 1233444
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhhcCCh---hhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhh
Q 003227 605 LVQLTRSPHEGVRQEAAGALWNLSFDD---RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAI 681 (837)
Q Consensus 605 L~~lL~~~~~~~~~~a~~~L~~Ls~~~---~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l 681 (837)
|...+.+.. -.+-++.+|.-|.... ++-... +..+..-+-- ++.-+|.+|+.+|..++-+.+.. +
T Consensus 455 LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~y-----vrhIyNR~iL---EN~ivRsaAv~aLskf~ln~~d~--~ 522 (898)
T COG5240 455 LCTFIEDCE--YHQITVRILGILGREGPRAKTPGKY-----VRHIYNRLIL---ENNIVRSAAVQALSKFALNISDV--V 522 (898)
T ss_pred HHHHHhhcc--hhHHHHHHHHHhcccCCCCCCcchH-----HHHHHHHHHH---hhhHHHHHHHHHHHHhccCcccc--c
Confidence 444443321 1122333444443321 111111 2222221211 56779999999998887543221 1
Q ss_pred hccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHH---HcCCHHHHHHHH
Q 003227 682 GREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIV---EEGGVPALVHLC 735 (837)
Q Consensus 682 ~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~---~~~~i~~L~~ll 735 (837)
........|-+.+.+.+++||..|..+|.+|-.....-. ++ +-+-+|.|..-+
T Consensus 523 ~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~p-l~~sd~~~dipsle~~l 578 (898)
T COG5240 523 SPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEP-LFSSDELGDIPSLELEL 578 (898)
T ss_pred cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhc-cccccccCCcchhHHhh
Confidence 112233346677889999999999999999874332222 22 234466665433
No 144
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=8.7e-05 Score=71.91 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=39.4
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCcc
Q 003227 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~ 256 (837)
.+++|++.+|...-...+..+++.+|++..+-+..|+.=+. .+...+|.+-.|+|+.+.--++.++..+. +.+.|.
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln-~f~~l~ 252 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN-GFPQLV 252 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHc-CCchhh
Confidence 34444444443222223334455556666666655532222 23334455555555554333334444432 355566
Q ss_pred EEEeccCCC
Q 003227 257 GLDVSRTDV 265 (837)
Q Consensus 257 ~L~l~~~~i 265 (837)
.|.++.+.+
T Consensus 253 dlRv~~~Pl 261 (418)
T KOG2982|consen 253 DLRVSENPL 261 (418)
T ss_pred eeeccCCcc
Confidence 666665544
No 145
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.017 Score=62.94 Aligned_cols=311 Identities=14% Similarity=0.116 Sum_probs=182.5
Q ss_pred HHHHhhhcCC--HHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch
Q 003227 383 LLLSLMQSTQ--EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (837)
Q Consensus 383 ~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (837)
.+-++|.+++ +-++..||.+|..|...+++. +...+....++.+|.+.+-.+.-.+...+..++. ++
T Consensus 150 DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl----------~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 150 DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL----------VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred hhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc----------cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 3346664443 557888999999988776543 3334567799999999888888788888877776 33
Q ss_pred -HHHHHHHHcCCHHHHHHHHhc-------------CCHHHHHHHHHHHHhhccC--ccchHHHHhhCCHHHHHHHHHhhC
Q 003227 460 -KVAKAVAEEGGINILAVLARS-------------MNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWS 523 (837)
Q Consensus 460 -~~~~~i~~~g~i~~L~~lL~~-------------~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~ 523 (837)
+.+..+.. ++..|.++... +.|=++-.++++|.+.-.. +..+..+.+ .++.++...+...
T Consensus 220 ~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 220 ESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPP 295 (938)
T ss_pred HHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCc
Confidence 33322211 23333333321 3455666777777766432 234444433 2333333332110
Q ss_pred CCCHHH-----HHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 003227 524 SGGDGV-----LERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (837)
Q Consensus 524 ~~~~~~-----~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 597 (837)
.+..+ +..++.-.-+++.. +.-.+.+. .++..|-+++.+.. ..++.-|...++.++.. +...+.+.
T Consensus 296 -~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE-~NiRYLaLEsm~~L~ss----~~s~davK 367 (938)
T KOG1077|consen 296 -KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRE-TNIRYLALESMCKLASS----EFSIDAVK 367 (938)
T ss_pred -cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhccc-ccchhhhHHHHHHHHhc----cchHHHHH
Confidence 11111 12222223344442 22223332 35777888888775 78999999999999984 32233333
Q ss_pred ccchHHHHHHHcC-CCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--
Q 003227 598 EAGALEALVQLTR-SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-- 674 (837)
Q Consensus 598 ~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-- 674 (837)
. -.+.++..|+ ..|..++..|+..|..++.....+ .| +..|++.|.+ .+..+|+.-+.=.+-++..
T Consensus 368 ~--h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak-~I-----V~elLqYL~t---Ad~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 368 K--HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK-QI-----VAELLQYLET---ADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred H--HHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH-HH-----HHHHHHHHhh---cchHHHHHHHHHHHHHHHHhc
Confidence 2 2677888898 668999999999999988654433 33 5667888877 8888888755444444421
Q ss_pred ccch-------h------hhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCC
Q 003227 675 EANC-------I------AIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGG 727 (837)
Q Consensus 675 ~~~~-------~------~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~ 727 (837)
++.. + ..++.+....+++.. -.+++++.+|++-+...-..+...+.|++.||
T Consensus 437 tDy~WyVdviLqLiriagd~vsdeVW~RvvQiV-vNnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 437 TDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred CCcchhHHHHHHHHHHhcccccHHHHHHhheeE-ecchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 1110 0 011112222233332 24688888888888887777777777776655
No 146
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.40 E-value=0.0044 Score=66.02 Aligned_cols=262 Identities=13% Similarity=0.031 Sum_probs=160.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCccc---hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch
Q 003227 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEH---KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547 (837)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~---~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 547 (837)
+..++.+|+++.+.++..|+...+.|+.-=.+ -+.+...|. .|.+-| ....+++.-..+.++..+......+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l---ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL---GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc---CcccHHHHHHHHHHHHHHhhhhccc
Confidence 56777888999999999999988888752111 122222222 234444 4567888888887777776543322
Q ss_pred ---HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHH
Q 003227 548 ---MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGAL 624 (837)
Q Consensus 548 ---~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L 624 (837)
..+ .|.+|.|...|++.. ..++.+.+..+..++..+.+....++-+ .+-=.|+.+|++.+.+++.+|...+
T Consensus 681 ~mqpPi--~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tf 754 (975)
T COG5181 681 SMQPPI--SGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETF 754 (975)
T ss_pred ccCCch--hhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhh
Confidence 222 478999999999886 8999999999999988643322222211 1223467778899999999999999
Q ss_pred HhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHH
Q 003227 625 WNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHET 704 (837)
Q Consensus 625 ~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~ 704 (837)
+.++..-.. +..+..|+.-|+. .+...|.....+++-.+. .-.-...+|.|+.--..++..||..
T Consensus 755 G~Is~aiGP------qdvL~~LlnnLkv---qeRq~RvctsvaI~iVae------~cgpfsVlP~lm~dY~TPe~nVQnG 819 (975)
T COG5181 755 GCISRAIGP------QDVLDILLNNLKV---QERQQRVCTSVAISIVAE------YCGPFSVLPTLMSDYETPEANVQNG 819 (975)
T ss_pred hhHHhhcCH------HHHHHHHHhcchH---HHHHhhhhhhhhhhhhHh------hcCchhhHHHHHhcccCchhHHHHh
Confidence 988764211 1122333333322 222222211112211110 0111224555655556677889999
Q ss_pred HHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 705 AAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 705 a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.+++++.+...-.+...=.-....|.|-+.+.+.+ +.-|..|...+..+.-+.+
T Consensus 820 vLkam~fmFeyig~~s~dYvy~itPlleDAltDrD-~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 820 VLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRD-PVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc-hHHHHHHHHHHHHHhcCCC
Confidence 99999999874433322222234556666777664 7778889999999887765
No 147
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.39 E-value=0.017 Score=63.13 Aligned_cols=259 Identities=18% Similarity=0.194 Sum_probs=167.6
Q ss_pred hhhcCcCchhhHHHhhhHHHHHHhh----------hcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHH
Q 003227 364 TAESNPQGLDDFWLKQGAGLLLSLM----------QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLL 433 (837)
Q Consensus 364 l~~~~~~~~~~~~~~~~i~~L~~ll----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~L 433 (837)
+-...+.+...+....|+..|+++- ...++++...|..||+|+...+. ..++.+.+.|..+.+
T Consensus 7 iLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~-------~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 7 ILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSP-------SARQIFVDLGLAEKL 79 (446)
T ss_pred HHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCH-------HHHHHHHHcCcHHHH
Confidence 3345555677777777777777765 33568899999999999876544 346788999999999
Q ss_pred HHHHhcC-----ChhHHHHHHHHHHHhcc-ChHHHHHHHHc-CCHHHHHHHHhc-----------------CCHHHHHHH
Q 003227 434 LDLAKSW-----REGLQSEAAKAIANLSV-NAKVAKAVAEE-GGINILAVLARS-----------------MNRLVAEEA 489 (837)
Q Consensus 434 v~lL~~~-----~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-g~i~~L~~lL~~-----------------~~~~~~~~a 489 (837)
++.|+.. +.++.....++|.-++. .++.+..+++. +++..+...+.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999986 78899999999999887 66777777766 677777766532 133456677
Q ss_pred HHHHHhhccCccchHHHHhhCCHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhhcC-CCc-------hHH----HH
Q 003227 490 AGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW------SSGGDGVLERAAGALANLAAD-DKC-------SME----VA 551 (837)
Q Consensus 490 ~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~------~~~~~~~~~~a~~~L~~l~~~-~~~-------~~~----l~ 551 (837)
+.++.|++........-.....++.++.++... .........+++.+|.|+--. ... ... -.
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 888889886432211112334566666666543 122346777888888877311 000 000 01
Q ss_pred hcCcHHHHHHHHhcC----C---CHHHHHHHHHHHHHHhcCCCCCCcccchh----------------hccchHHHHHHH
Q 003227 552 LAGGVHALVMLARSC----K---FEGVQEQAARALANLAAHGDSNSNNSAVG----------------QEAGALEALVQL 608 (837)
Q Consensus 552 ~~g~i~~L~~ll~~~----~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------------~~~~~i~~L~~l 608 (837)
....+..|+.+|+.. . ..+.....+.+|.+++... ...+..+ .....-..|+++
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~---~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA---REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL 316 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc---HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence 113466666666521 1 1234455666666666641 2222222 123455678999
Q ss_pred cCCCCHHHHHHHHHHHHhhcCChh
Q 003227 609 TRSPHEGVRQEAAGALWNLSFDDR 632 (837)
Q Consensus 609 L~~~~~~~~~~a~~~L~~Ls~~~~ 632 (837)
+.+..+.++..++..|+.||..+.
T Consensus 317 mt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHhhhH
Confidence 998889999999999999987543
No 148
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.38 E-value=0.017 Score=63.17 Aligned_cols=275 Identities=16% Similarity=0.164 Sum_probs=157.9
Q ss_pred HHHHHHhCcHHHHHHHH----------hcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcC-----CHH
Q 003227 421 AEAVMKDGGIRLLLDLA----------KSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSM-----NRL 484 (837)
Q Consensus 421 ~~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~-----~~~ 484 (837)
.+.+....++..|.+.- ...+..+...|+++|.|+.. ++..|+.+++.|+.+.+++.|+.. +.+
T Consensus 15 ~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d 94 (446)
T PF10165_consen 15 LDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSD 94 (446)
T ss_pred chhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChh
Confidence 33455555555555443 34688899999999999888 789999999999999999999875 788
Q ss_pred HHHHHHHHHHhhcc-CccchHHHHhh-CCHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHhhcCCCchH
Q 003227 485 VAEEAAGGLWNLSV-GEEHKGAIADA-GGVKALVDLIFKWS--------------SGGDGVLERAAGALANLAADDKCSM 548 (837)
Q Consensus 485 ~~~~a~~~L~~l~~-~~~~~~~l~~~-g~i~~L~~lL~~~~--------------~~~~~~~~~a~~~L~~l~~~~~~~~ 548 (837)
+.-...++|.-++. .++.+..+++. +++..++..+.... ..+.+....++.++.|+........
T Consensus 95 ~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~ 174 (446)
T PF10165_consen 95 VEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSV 174 (446)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCccc
Confidence 88888888888885 45667666655 78888887775411 1245567788899999987432221
Q ss_pred HHHhcCcHHHHHHHHhcC--------CCHHHHHHHHHHHHHHhcCCCCC--------CcccchhhccchHHHHHHHcCCC
Q 003227 549 EVALAGGVHALVMLARSC--------KFEGVQEQAARALANLAAHGDSN--------SNNSAVGQEAGALEALVQLTRSP 612 (837)
Q Consensus 549 ~l~~~g~i~~L~~ll~~~--------~~~~~~~~a~~~L~~l~~~~~~~--------~~~~~~~~~~~~i~~L~~lL~~~ 612 (837)
.-...+.++.++.++..- .......+++.+|.|+-...... ............+..|+.+|...
T Consensus 175 ~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~ 254 (446)
T PF10165_consen 175 PEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKR 254 (446)
T ss_pred chhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHH
Confidence 111123444444443311 12455667777777773210000 00000111223334444443210
Q ss_pred CHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChH-HHH
Q 003227 613 HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVA-PLI 691 (837)
Q Consensus 613 ~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~-~L~ 691 (837)
+....... + ...+.+++.+|......+..+|..--..+. =...+-...+.+.+.++ .|+
T Consensus 255 --------------l~~~~~~~--l--~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lL--P~~~Dr~~~~e~~~tL~~rLl 314 (446)
T PF10165_consen 255 --------------LDKYEALK--L--DELLTPLLTLLTRLARAAREVRKYLRARLL--PPDKDRKKPPEKGDTLRSRLL 314 (446)
T ss_pred --------------HHhcCccc--c--hhhHhhHHHHHHHHHHhcHHHHHHHHHHhC--CChhhcccCCCCCcchHHHHH
Confidence 11111000 1 123455555554322233333332222110 01122223344455555 599
Q ss_pred HHhccCCHHHHHHHHHHHHHHcCC
Q 003227 692 ALARSEAEDVHETAAGALWNLAFN 715 (837)
Q Consensus 692 ~lL~s~~~~v~~~a~~~L~~l~~~ 715 (837)
+++.+..+.++..++..|+.||..
T Consensus 315 rLmt~~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 315 RLMTSPDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred HHhCCCCchHHHHHHHHHHHHHhh
Confidence 999888899999999999999853
No 149
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.26 E-value=4.8e-05 Score=82.50 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=29.9
Q ss_pred HHHHHHhCCCcceeeecCccc---chHHHHHcCCCccEEecCCCCCCCHHHHHHH
Q 003227 95 AASLASRCMNLQKLRFRGAES---ADSIIHLQARNLRELSGDYCRKITDATLSVI 146 (837)
Q Consensus 95 l~~l~~~~~~L~~L~l~~~~~---~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~ 146 (837)
++.+....++++.|.+-.... ...+-...++.|+.|.+.+|.--+..++..+
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH
Confidence 344555556666666643322 2333344788999999999873334444444
No 150
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.26 E-value=0.00028 Score=81.06 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=16.1
Q ss_pred CCccEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
.+|+.|++++|.++. + ....++|+.|+++++.
T Consensus 382 ~~L~~LdLs~N~Lt~--L---P~l~s~L~~LdLS~N~ 413 (788)
T PRK15387 382 SGLKELIVSGNRLTS--L---PVLPSELKELMVSGNR 413 (788)
T ss_pred cccceEEecCCcccC--C---CCcccCCCEEEccCCc
Confidence 346666666655431 1 1113456666666654
No 151
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.24 E-value=5.5e-05 Score=84.50 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=99.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhC
Q 003227 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (837)
Q Consensus 125 ~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 204 (837)
+.|+.|.+.++. ++|..+.. ..++++|+.|+|+ .++++...-..+ ..++.|+.|+|+|. .++.-. .-...|
T Consensus 359 ~~Lq~LylanN~-Ltd~c~p~-l~~~~hLKVLhLs---yNrL~~fpas~~-~kle~LeeL~LSGN-kL~~Lp--~tva~~ 429 (1081)
T KOG0618|consen 359 AALQELYLANNH-LTDSCFPV-LVNFKHLKVLHLS---YNRLNSFPASKL-RKLEELEELNLSGN-KLTTLP--DTVANL 429 (1081)
T ss_pred HHHHHHHHhcCc-ccccchhh-hccccceeeeeec---ccccccCCHHHH-hchHHhHHHhcccc-hhhhhh--HHHHhh
Confidence 346666676644 77766554 4468899999996 333332222222 34778999999987 443322 222347
Q ss_pred CCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCC---CCHHHHHHHHhcCcccc
Q 003227 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD---VGPITISRLLTSSKSLK 281 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~---i~~~~l~~l~~~~~~L~ 281 (837)
+.|++|...+|..+.-..+..++.|+.+|+|.| +++...+..... -|+|++||++||. ++...+. .+..+.
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~----~l~~l~ 503 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLK----VLKSLS 503 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCCcccccchhhhH----Hhhhhh
Confidence 889999888875555567888999999999865 665555444333 2899999999973 2333332 244555
Q ss_pred cccccccccccchhHHHHH
Q 003227 282 VLCALNCPVLEEENNISAV 300 (837)
Q Consensus 282 ~l~l~~c~~i~~~~~~~~~ 300 (837)
..++.-. ..+|..+.++.
T Consensus 504 ~~~i~~~-~~~d~~~n~~~ 521 (1081)
T KOG0618|consen 504 QMDITLN-NTPDGNVNAFL 521 (1081)
T ss_pred heecccC-CCCccccceeh
Confidence 5555433 35565544544
No 152
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.063 Score=59.14 Aligned_cols=317 Identities=14% Similarity=0.097 Sum_probs=187.1
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhccC
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSVN 458 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~ 458 (837)
-+|.+...|.+..+-+|.+|..++..+....+.- -..+-+.+-..|.. .|+..++.|.-.|...-
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~~~L------------~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D-- 200 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL------------IPDAPELIESFLLTEQDPSCKRNAFLMLFTTD-- 200 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh------------cCChHHHHHHHHHhccCchhHHHHHHHHHhcC--
Confidence 3588899998889999999999998765432211 12233344455544 68888888877775443
Q ss_pred hHHHHHHHHcCCHHHHHHHH---hcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLA---RSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL---~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (837)
++. ++.-|.... .+-++.++-..+..++..+. ++.-+. ..+..+..+|. +.++.++..|+
T Consensus 201 ~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~---stssaV~fEaa 264 (948)
T KOG1058|consen 201 PER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLS---STSSAVIFEAA 264 (948)
T ss_pred HHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHh---cCCchhhhhhc
Confidence 221 122222221 11234555555555555553 222222 24566788885 46788888899
Q ss_pred HHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCH
Q 003227 535 GALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (837)
Q Consensus 535 ~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 614 (837)
++|..++.++..-.. +...+++++...++..+..-..--|..+... +..++ .|.+-.+++.|.+++-
T Consensus 265 ~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~------~~~il--~~l~mDvLrvLss~dl 331 (948)
T KOG1058|consen 265 GTLVTLSNDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKAL------HEKIL--QGLIMDVLRVLSSPDL 331 (948)
T ss_pred ceEEEccCCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhh------hHHHH--HHHHHHHHHHcCcccc
Confidence 998888877654322 2445666665544455555444444444421 11222 3666777888999999
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHh-----h---cCCCCHHHHHHHHHHHHhcccC-ccchhhhhccC
Q 003227 615 GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQ-----S---CSNASPGLQERAAGALWGLSVS-EANCIAIGREG 685 (837)
Q Consensus 615 ~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~-----~---~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~ 685 (837)
+++..+......|+.... +..++.+|+ + .+..+..-|..-..++..++.. |+.. ..
T Consensus 332 dvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----at 396 (948)
T KOG1058|consen 332 DVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----AT 396 (948)
T ss_pred cHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HH
Confidence 999999988888766532 222222221 1 0123444566677777777654 4332 23
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 686 GVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 686 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.++.|++.+.+.++......+..+..... .|..|..+++ .|++-+..-.+..+...|+|.++..+.+..
T Consensus 397 vV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~-----~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 397 VVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE-----KLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH-----HHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 67889999988887776666666666544 5655544443 555544433345566777777776655443
No 153
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.12 Score=55.16 Aligned_cols=332 Identities=18% Similarity=0.112 Sum_probs=165.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCCh-hHHHHHHHHHHHhccChH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE-GLQSEAAKAIANLSVNAK 460 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~ 460 (837)
-.+.++.++.|+..+...-.++..|..-.++. +. +...+++=+..+.+ .++-.|.+.|..+....
T Consensus 68 f~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv----------lm---~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~- 133 (898)
T COG5240 68 FAILKLFQHKDLYLRQCVYSAIKELSKLTEDV----------LM---GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE- 133 (898)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcchhh----------hH---HHHHHHHhhccCCccccccHHHHHHHHhcCcc-
Confidence 35666678888888887777777655433222 11 12345555555544 67778888887766532
Q ss_pred HHHHHHHcCCHHHHHHHHh----cCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHh---------hCCCCH
Q 003227 461 VAKAVAEEGGINILAVLAR----SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---------WSSGGD 527 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~---------~~~~~~ 527 (837)
.+...-++++ +..+.++..|+..-+.|-....+...--....-++.+++-+. ....++
T Consensus 134 ---------tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~ 204 (898)
T COG5240 134 ---------TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNP 204 (898)
T ss_pred ---------hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCCh
Confidence 2333333333 345666666666666665433211110000111222222211 123455
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHH---HHHHHHHHHhcCCCCCCcccchhhccchHHH
Q 003227 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQE---QAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (837)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~---~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~ 604 (837)
-.+.+|++.|..+-+.+.. +.-.+++.+.+.....-+. ..+++...+... +++... ...|.
T Consensus 205 isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~---n~q~~~-----q~rpf 268 (898)
T COG5240 205 ISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE---NSQALL-----QLRPF 268 (898)
T ss_pred HHHHHHHHHHHHHhcccHH--------HHHHHHHHhhcccccccchhheehHHHHHHHHHh---ChHHHH-----HHHHH
Confidence 6788888888877654432 2233444444332111111 122222222221 221111 12344
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-cc-------
Q 003227 605 LVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EA------- 676 (837)
Q Consensus 605 L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~------- 676 (837)
|-..++++-+.+...++.++..++...-.- .+++ .++..|-.+|.+ .....|-.|.++|..++.. |+
T Consensus 269 L~~wls~k~emV~lE~Ar~v~~~~~~nv~~-~~~~-~~vs~L~~fL~s---~rv~~rFsA~Riln~lam~~P~kv~vcN~ 343 (898)
T COG5240 269 LNSWLSDKFEMVFLEAARAVCALSEENVGS-QFVD-QTVSSLRTFLKS---TRVVLRFSAMRILNQLAMKYPQKVSVCNK 343 (898)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHhccCH-HHHH-HHHHHHHHHHhc---chHHHHHHHHHHHHHHHhhCCceeeecCh
Confidence 445555555667777777776665532111 1111 145556666665 6667777777777777632 11
Q ss_pred ---------ch-------hhhhccC---ChHHHHH----HhccCCHHHHHHHHHHHHHHcC-CcccHH--------HHHH
Q 003227 677 ---------NC-------IAIGREG---GVAPLIA----LARSEAEDVHETAAGALWNLAF-NPGNAL--------RIVE 724 (837)
Q Consensus 677 ---------~~-------~~l~~~~---~i~~L~~----lL~s~~~~v~~~a~~~L~~l~~-~~~~~~--------~i~~ 724 (837)
+| ..+.+.| .+..|+. ++++-++..+..+..++..|+. .|..+. .+.+
T Consensus 344 evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 344 EVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred hHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 11 1111111 2223332 3344444555555666666655 333332 2345
Q ss_pred cCC-------HHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 725 EGG-------VPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 725 ~~~-------i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
+|+ ++++.+.+.. .|..++.|...|+.+.++.+
T Consensus 424 eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDce 463 (898)
T COG5240 424 EGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCE 463 (898)
T ss_pred cccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcc
Confidence 565 5556666654 36788999998888887765
No 154
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.17 E-value=0.0004 Score=80.21 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=32.9
Q ss_pred CCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccc
Q 003227 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (837)
Q Consensus 227 ~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~ 293 (837)
++|+.|++++|. ++. +.. .-+++|+.|++++|+++.-. ..+ .++|+.|++++|. ++.
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~L~~LP-~~l---p~~L~~LdLs~N~-Lt~ 381 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPA--SLPPELQVLDVSKNQITVLP-ETL---PPTITTLDVSRNA-LTN 381 (754)
T ss_pred ccceeccccCCc-ccc--CCh--hhcCcccEEECCCCCCCcCC-hhh---cCCcCEEECCCCc-CCC
Confidence 567777777763 221 111 11367888888887665210 011 3578888888876 554
No 155
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.14 E-value=0.11 Score=59.41 Aligned_cols=344 Identities=16% Similarity=0.074 Sum_probs=185.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc--Ch
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NA 459 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~ 459 (837)
+..-++-++.++.++..++.-+++++..-. ......+.++.++++..++...++..|...+.++.. +.
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~----------~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~ 309 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLE----------SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD 309 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHHH----------HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC
Confidence 444444477888999999999998774322 256778889999999999999999999999988765 22
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHH-----
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA----- 534 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~----- 534 (837)
+. . ......+.+++...+++..++.......+.+...=.- ......-+++....++ ....+.+..++
T Consensus 310 ~~--d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~---~~~~e~r~a~a~~~~~ 381 (759)
T KOG0211|consen 310 DD--D-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLK---DEEWEVRYAIAKKVQK 381 (759)
T ss_pred ch--h-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhc---chhhhhhHHhhcchHH
Confidence 21 1 1122467888888888777777766666655431000 0001111223333331 12222222222
Q ss_pred -------------------HHHHHhhcCCC--chHHHHh-----------cC----cHHHHHHHHhcCCCHHHHHHHHHH
Q 003227 535 -------------------GALANLAADDK--CSMEVAL-----------AG----GVHALVMLARSCKFEGVQEQAARA 578 (837)
Q Consensus 535 -------------------~~L~~l~~~~~--~~~~l~~-----------~g----~i~~L~~ll~~~~~~~~~~~a~~~ 578 (837)
-.+..+..+.. .+.+... .. ..+.+...+++.. +.|+......
T Consensus 382 l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~-~~V~lnli~~ 460 (759)
T KOG0211|consen 382 LACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDED-PIVRLNLIDK 460 (759)
T ss_pred HhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhh-HHHHHhhHHH
Confidence 22333332211 1111110 00 1222333333332 4555544443
Q ss_pred HHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCH
Q 003227 579 LANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASP 658 (837)
Q Consensus 579 L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~ 658 (837)
+..+-.. ++...........++.+..+-......++.+....+..++.... ..+.+....+.+...+.+ ...
T Consensus 461 ls~~~~v---~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d---~v~ 532 (759)
T KOG0211|consen 461 LSLLEEV---NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPD---HVY 532 (759)
T ss_pred HHHHHhc---cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhh---hHH
Confidence 3333221 22222222334445555555555556677777777776665433 122222222222333333 567
Q ss_pred HHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcC
Q 003227 659 GLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSS 738 (837)
Q Consensus 659 ~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~ 738 (837)
.++++|+..+..++..-.. .-.....++.++.+..+++--.|...+.++.-++. ..-..+.....+|.+.++..+.
T Consensus 533 ~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~--v~g~ei~~~~Llp~~~~l~~D~ 608 (759)
T KOG0211|consen 533 SIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE--VLGQEITCEDLLPVFLDLVKDP 608 (759)
T ss_pred HHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH--HhccHHHHHHHhHHHHHhccCC
Confidence 8888888888777642110 01112245666666655556666666666665542 1122344456678888888876
Q ss_pred CcHHHHHHHHHHHHHhhCC
Q 003227 739 GSKMARFMAALALAYMFDG 757 (837)
Q Consensus 739 ~~~~~~~~a~~aL~~l~~~ 757 (837)
. ++||..++..|..+...
T Consensus 609 v-anVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 609 V-ANVRINVAKHLPKILKL 626 (759)
T ss_pred c-hhhhhhHHHHHHHHHhh
Confidence 4 89999999999988654
No 156
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.08 E-value=0.00025 Score=81.42 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=38.3
Q ss_pred CCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccccc
Q 003227 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~ 284 (837)
++|+.|++++| .++.-. ...++|+.|++++|. ++. +.....+|+.|++++|.++. +-.-+..+++|+.|+
T Consensus 382 ~~L~~LdLs~N-~Lt~LP-~l~s~L~~LdLS~N~-Lss-----IP~l~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLP-VLPSELKELMVSGNR-LTS-----LPMLPSGLLSLSVYRNQLTR--LPESLIHLSSETTVN 451 (788)
T ss_pred cccceEEecCC-cccCCC-CcccCCCEEEccCCc-CCC-----CCcchhhhhhhhhccCcccc--cChHHhhccCCCeEE
Confidence 35666666665 233210 112456666666653 221 11112346666666665541 111112366677777
Q ss_pred ccccccccchh
Q 003227 285 ALNCPVLEEEN 295 (837)
Q Consensus 285 l~~c~~i~~~~ 295 (837)
+++++ ++...
T Consensus 452 Ls~N~-Ls~~~ 461 (788)
T PRK15387 452 LEGNP-LSERT 461 (788)
T ss_pred CCCCC-CCchH
Confidence 77766 55444
No 157
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.06 E-value=0.01 Score=59.01 Aligned_cols=179 Identities=18% Similarity=0.137 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC---CchHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 003227 523 SSGGDGVLERAAGALANLAADD---KCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~~---~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 597 (837)
.+.+.+.+..++.-|..+.... +....+.+. ..+..+...+.+.. ..+...|+.++..++... ... ..-.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l---~~~-~~~~ 91 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQL---GSH-FEPY 91 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHH---GGG-GHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHH---hHh-HHHH
Confidence 4577888888988888887644 333333222 34455566665544 677889999999998742 111 1112
Q ss_pred ccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChh-hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCcc
Q 003227 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR-NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA 676 (837)
Q Consensus 598 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~ 676 (837)
-...++.|+..+.++..-+++.|..+|..+..+-. ....+ ++.+.....+ .++.+|..++..+..+.....
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~---Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKS---KNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT----S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcc
Confidence 35678889999999999999999999999888744 12111 3445555555 999999999999988875422
Q ss_pred -chhhhhc----cCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 677 -NCIAIGR----EGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 677 -~~~~l~~----~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
....+.. ...++.+...+.+++++||..|-.++..+..
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 2222322 2356677888899999999999999999865
No 158
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.057 Score=59.37 Aligned_cols=238 Identities=18% Similarity=0.105 Sum_probs=148.6
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchH
Q 003227 470 GINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSM 548 (837)
Q Consensus 470 ~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 548 (837)
..+-|.+.|++ +++.++.-++--|+-....+.++. ..+.+-..|.+ ++...-+.|.-.++-+.-...+.+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~e------iYe~lKevLy~---D~AvsGEAAgi~MGl~mlGt~~~e 484 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEE------IYEKLKEVLYN---DSAVSGEAAGIAMGLLMLGTANQE 484 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccHH------HHHHHHHHHhc---cchhhhhHHHHhhhhHhhCcCcHH
Confidence 36778888876 467788888877766555443332 23345556642 333333444434443333444433
Q ss_pred HHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHh-h
Q 003227 549 EVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWN-L 627 (837)
Q Consensus 549 ~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~-L 627 (837)
++.-++....+...+.+++...-.+.-.... .++++=+.+-+++.+.++-+|.....++.- .
T Consensus 485 ------aiedm~~Ya~ETQHeki~RGl~vGiaL~~yg-----------rqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy 547 (929)
T KOG2062|consen 485 ------AIEDMLTYAQETQHEKIIRGLAVGIALVVYG-----------RQEDADPLIKELLRDKDPILRYGGMYTLALAY 547 (929)
T ss_pred ------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhh-----------hhhhhHHHHHHHhcCCchhhhhhhHHHHHHHH
Confidence 3555666666655456665544444444432 123444556677888899888887655542 1
Q ss_pred cCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHh-ccCCHHHHHHHH
Q 003227 628 SFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA-RSEAEDVHETAA 706 (837)
Q Consensus 628 s~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL-~s~~~~v~~~a~ 706 (837)
+.. ...++|..|+...-+ +.+.+||.+|+.+|+.++..... ..+..+++| .+.++.||..++
T Consensus 548 ~GT-------gnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA 610 (929)
T KOG2062|consen 548 VGT-------GNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAA 610 (929)
T ss_pred hcc-------CchhhHHHhhccccc--ccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHH
Confidence 111 123577888887543 58999999999999998754222 466677777 577899999999
Q ss_pred HHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 707 GALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 707 ~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
.+|.-.|....++.. +..|-.+..+ ...-||..|..+++-+.-.
T Consensus 611 ~ALGIaCAGtG~~eA------i~lLepl~~D-~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 611 MALGIACAGTGLKEA------INLLEPLTSD-PVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred HHHhhhhcCCCcHHH------HHHHhhhhcC-hHHHHHHHHHHHHHHHHHh
Confidence 999999987666532 3333344443 3477999999999887543
No 159
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.96 E-value=0.0021 Score=43.68 Aligned_cols=40 Identities=38% Similarity=0.421 Sum_probs=36.7
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~ 498 (837)
++.+..+++.|+++.|+++++++++.+++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578899999999999999999999999999999999873
No 160
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.96 E-value=0.002 Score=43.81 Aligned_cols=38 Identities=42% Similarity=0.526 Sum_probs=34.8
Q ss_pred hHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 003227 420 RAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 420 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (837)
.+..+++.|+++.|+++|.+++++++..|+++|.+++.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 46678999999999999999999999999999999863
No 161
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.88 E-value=0.00075 Score=77.99 Aligned_cols=138 Identities=15% Similarity=0.142 Sum_probs=64.1
Q ss_pred CCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhc-CCCC
Q 003227 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC-CPKL 181 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~-~~~L 181 (837)
++|+.|+|++|.... +.....++|+.|+++++. ++. +.. ..+++|+.|++++ | .++.. ... .++|
T Consensus 241 ~~L~~L~Ls~N~L~~-LP~~l~s~L~~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls~--N-~Lt~L-----P~~lp~sL 306 (754)
T PRK15370 241 DTIQEMELSINRITE-LPERLPSALQSLDLFHNK-ISC--LPE--NLPEELRYLSVYD--N-SIRTL-----PAHLPSGI 306 (754)
T ss_pred ccccEEECcCCccCc-CChhHhCCCCEEECcCCc-cCc--ccc--ccCCCCcEEECCC--C-ccccC-----cccchhhH
Confidence 468888888876542 111123578888887654 442 211 1235788888852 3 33321 111 1245
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEec
Q 003227 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (837)
Q Consensus 182 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~ 261 (837)
+.|+++++ .++. +.. ...++|++|++++|. ++.-.-.-.++|+.|++++|. ++.-. ..+ .++|+.|+++
T Consensus 307 ~~L~Ls~N-~Lt~--LP~--~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~-L~~LP-~~l---p~~L~~LdLs 375 (754)
T PRK15370 307 THLNVQSN-SLTA--LPE--TLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQ-ITVLP-ETL---PPTITTLDVS 375 (754)
T ss_pred HHHHhcCC-cccc--CCc--cccccceeccccCCc-cccCChhhcCcccEEECCCCC-CCcCC-hhh---cCCcCEEECC
Confidence 55665555 3321 110 112456666666652 222110112456666666552 22100 011 2456666666
Q ss_pred cCCC
Q 003227 262 RTDV 265 (837)
Q Consensus 262 ~~~i 265 (837)
+|.+
T Consensus 376 ~N~L 379 (754)
T PRK15370 376 RNAL 379 (754)
T ss_pred CCcC
Confidence 6544
No 162
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.87 E-value=0.0015 Score=47.92 Aligned_cols=55 Identities=29% Similarity=0.226 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHH
Q 003227 658 PGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNL 712 (837)
Q Consensus 658 ~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l 712 (837)
+.+|..|+++|++++........-.....++.|+.+|.++++.|+..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999886543333334455889999999999999999999999875
No 163
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.022 Score=62.36 Aligned_cols=200 Identities=21% Similarity=0.179 Sum_probs=120.8
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhh
Q 003227 554 GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN 633 (837)
Q Consensus 554 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 633 (837)
+..+.|.+.|.+.+++.++..+|-.|.-...... +....+.+-..|..++.-.-++|.-++.-+.....+
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa----------~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~ 482 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA----------NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN 482 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccc----------cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc
Confidence 3567888888888878888877766655443211 123334444444443333333332222222111111
Q ss_pred HH----------------------------HHHHcCCHHHHHH-HHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhcc
Q 003227 634 RE----------------------------AIAAAGGVEALVV-LAQSCSNASPGLQERAAGALWGLSVSEANCIAIGRE 684 (837)
Q Consensus 634 ~~----------------------------~l~~~g~i~~L~~-ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~ 684 (837)
.+ .....+....++. ++.+ .++-+|...+.+++.--... ...
T Consensus 483 ~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~d---kdpilR~~Gm~t~alAy~GT------gnn 553 (929)
T KOG2062|consen 483 QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRD---KDPILRYGGMYTLALAYVGT------GNN 553 (929)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcC---CchhhhhhhHHHHHHHHhcc------Cch
Confidence 00 0111223334443 4443 67777776665554311111 123
Q ss_pred CChHHHHHH-hccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC--cc
Q 003227 685 GGVAPLIAL-ARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM--DE 761 (837)
Q Consensus 685 ~~i~~L~~l-L~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~--~~ 761 (837)
+++..|+.. ..+.+++|+++|..+|.-.+.... ..++..+.+|..+++++||..|+.||+-.+.+.. .+
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 467777766 567899999999999998775332 3467888999988899999999999999887766 45
Q ss_pred hhhhccCccCcccccchhH
Q 003227 762 FALIGTSTESTSKCVSLDG 780 (837)
Q Consensus 762 ~~~i~~~~~~~~~~~~~~~ 780 (837)
++++.|+..++...|+..+
T Consensus 626 i~lLepl~~D~~~fVRQgA 644 (929)
T KOG2062|consen 626 INLLEPLTSDPVDFVRQGA 644 (929)
T ss_pred HHHHhhhhcChHHHHHHHH
Confidence 5689999988887777633
No 164
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.82 E-value=0.001 Score=72.69 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=109.3
Q ss_pred ccEEecCCCCCCCHHHHHHHHh---cCCCCCeEEeCCCCCCCCCHHHHHHHHhcCC----CCCEEEecCCCCCCHHHHHH
Q 003227 127 LRELSGDYCRKITDATLSVIVA---RHEALESLQLGPDFCERITSDAVKAIALCCP----KLKKLRLSGIRDICGDAINA 199 (837)
Q Consensus 127 L~~L~l~~c~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~i~~~~~~~ 199 (837)
+..|.+.+|. +.+.+...+.. ..++|+.|+++ -+.+++.+...+....+ .|++|.+..| .+++++...
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~---~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLS---GNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAP 163 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcc---cCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHH
Confidence 7778888876 55545555443 45788888885 33667888877776554 4567778888 677776554
Q ss_pred HH---hhCCCccEEEecCCCCCChH------Hhh----CCCCCCEeeccCCCCCCHHHHHHHH---hcCCC-ccEEEecc
Q 003227 200 LA---KLCPNLTDIGFLDCLNVDEV------ALG----NVLSVRFLSVAGTSNMKWGVVSQVW---HKLPK-LVGLDVSR 262 (837)
Q Consensus 200 l~---~~~~~L~~L~l~~~~~~~~~------~l~----~l~~L~~L~ls~~~~i~~~~l~~~~---~~~~~-L~~L~l~~ 262 (837)
+. ..++++++++++.|....+. ++. ...++++|++++| .+++.....+. ...+. +..|++..
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 43 22578888888888544321 122 3567888999887 45555444333 34444 66688888
Q ss_pred CCCCHHHHHHHHhcC----cccccccccccccccchhHHHH
Q 003227 263 TDVGPITISRLLTSS----KSLKVLCALNCPVLEEENNISA 299 (837)
Q Consensus 263 ~~i~~~~l~~l~~~~----~~L~~l~l~~c~~i~~~~~~~~ 299 (837)
|.++|.++..+...+ +.++++++..|. |++.+....
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L 282 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDL 282 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHH
Confidence 888888877776533 456888999888 777663433
No 165
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.5 Score=54.82 Aligned_cols=233 Identities=16% Similarity=0.040 Sum_probs=133.9
Q ss_pred hCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchH
Q 003227 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKG 504 (837)
Q Consensus 427 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~ 504 (837)
+++++.|...|++.|..+++.|++-++.++. .| ..+++. .|...+.++.. +++..-..|+-+|+.++..--...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 4567799999999999999999999999998 44 222222 45566665544 335556688889999885321111
Q ss_pred HHHhhCCHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHhhcCCCch--HHHHhcCcHHH-HHHHHhcCCCHHHHHHHH
Q 003227 505 AIADAGGVKALVDLIFK-----WSSGGDGVLERAAGALANLAADDKCS--MEVALAGGVHA-LVMLARSCKFEGVQEQAA 576 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~-----~~~~~~~~~~~a~~~L~~l~~~~~~~--~~l~~~g~i~~-L~~ll~~~~~~~~~~~a~ 576 (837)
...+ ..+|.++.-+.- ..+....++..|+.++|.+++..+.. +.+... .... |...+-+.+ -..+++|.
T Consensus 416 s~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDre-vncRRAAs 492 (1133)
T KOG1943|consen 416 SLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDRE-VNCRRAAS 492 (1133)
T ss_pred HHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCch-hhHhHHHH
Confidence 1111 134444444421 13345579999999999999743221 222111 1222 222333333 67777777
Q ss_pred HHHHHHhcCCCCCCcccchh----------------------h-ccchHHHHHHH-----cCCCCHHHHHHHHHHHHhhc
Q 003227 577 RALANLAAHGDSNSNNSAVG----------------------Q-EAGALEALVQL-----TRSPHEGVRQEAAGALWNLS 628 (837)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~----------------------~-~~~~i~~L~~l-----L~~~~~~~~~~a~~~L~~Ls 628 (837)
.|+....-.....+..-..+ . -.|...++++- +.+.+..+++.++.+|.+|+
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 77766543211121111111 1 11223333322 34569999999999999988
Q ss_pred CChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 629 FDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 629 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
...+ .....+.+++++....+ .+...+.-+..+.+.+.
T Consensus 573 ~~~p---k~~a~~~L~~lld~~ls---~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 573 LTEP---KYLADYVLPPLLDSTLS---KDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HhhH---HhhcccchhhhhhhhcC---CChHHhhhhHHHHHHHH
Confidence 7522 22234567777777765 77777765555544443
No 166
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.77 E-value=0.084 Score=61.40 Aligned_cols=292 Identities=14% Similarity=-0.010 Sum_probs=170.1
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC----ccc
Q 003227 430 IRLLLDLAKS-WREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG----EEH 502 (837)
Q Consensus 430 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~----~~~ 502 (837)
+..+...+++ ...+.+..|++.|..++. +++.+-. ..+|-++.++.++...||..|+.+|..+... +..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3455555655 467889999999999987 4444322 2589999999999999999999999887642 222
Q ss_pred hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003227 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (837)
Q Consensus 503 ~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (837)
-..+.-.-.+|.|-.++.+ +....++..-+..|..||.... .+.+.+.-.....++.+.+++
T Consensus 500 daniF~eYlfP~L~~l~~d--~~~~~vRiayAsnla~LA~tA~---rFle~~q~~~~~g~~n~~nse------------- 561 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLND--SSAQIVRIAYASNLAQLAKTAY---RFLELTQELRQAGMLNDPNSE------------- 561 (1431)
T ss_pred cchhhHhhhhhhhHhhhcc--CccceehhhHHhhHHHHHHHHH---HHHHHHHHHHhcccccCcccc-------------
Confidence 2333333366777777742 2334455555666666652110 000000000001112222211
Q ss_pred hcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcC----CHHHHHHHHhhcCCCCH
Q 003227 583 AAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAG----GVEALVVLAQSCSNASP 658 (837)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g----~i~~L~~ll~~~~~~~~ 658 (837)
..++.+.+......-..+-+....+|.++++-|+..-+..|.-|+.. +++.+ .+..|+.+|.+ .++
T Consensus 562 -t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLND---kDw 631 (1431)
T KOG1240|consen 562 -TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLND---KDW 631 (1431)
T ss_pred -cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcC---ccH
Confidence 00000000000001123334556677777878888877777766642 22222 47788888887 788
Q ss_pred HHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcC
Q 003227 659 GLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSS 738 (837)
Q Consensus 659 ~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~ 738 (837)
.+|.+-...+.-++.--.. .-+++..+|-|.+-|.++.+.|...|+++|.-|+...-.+...+. ..++...-+|..+
T Consensus 632 ~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 632 RLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHP 708 (1431)
T ss_pred HHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCc
Confidence 8887666656554432111 113455677788889999999999999999999864333222111 1223444456656
Q ss_pred CcHHHHHHHHHHHHHhhCC
Q 003227 739 GSKMARFMAALALAYMFDG 757 (837)
Q Consensus 739 ~~~~~~~~a~~aL~~l~~~ 757 (837)
+ ..+|..++..+......
T Consensus 709 N-~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 709 N-LWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred h-HHHHHHHHHHHHHHHhh
Confidence 4 88999999988887653
No 167
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.68 E-value=1.8e-05 Score=69.94 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=79.7
Q ss_pred CCcceeeecCcccchHHH-HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCC--CHHHHHHHHhcCC
Q 003227 103 MNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERI--TSDAVKAIALCCP 179 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~~~~ 179 (837)
.++++|.++++....... .....+|+.|+++++. + +.+..-.+.+++|+.|+++ .+++ ...++ ..+|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-i--e~lp~~issl~klr~lnvg---mnrl~~lprgf----gs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-I--EELPTSISSLPKLRILNVG---MNRLNILPRGF----GSFP 102 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-h--hhcChhhhhchhhhheecc---hhhhhcCcccc----CCCc
Confidence 346667777665432111 1145677778877754 2 2344445567888888874 2221 11221 2367
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCC-CChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEE
Q 003227 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN-VDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L 258 (837)
.|+.|+|++. +++...+.-=.-++..|+-|.++++.. +-...++.+++|+.|.+..+..++- ..-...+.+|++|
T Consensus 103 ~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l---pkeig~lt~lrel 178 (264)
T KOG0617|consen 103 ALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL---PKEIGDLTRLREL 178 (264)
T ss_pred hhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC---cHHHHHHHHHHHH
Confidence 7777777766 444443321111234566667776632 1224566777777777776644421 1112335567777
Q ss_pred EeccCCC
Q 003227 259 DVSRTDV 265 (837)
Q Consensus 259 ~l~~~~i 265 (837)
++.|+.+
T Consensus 179 hiqgnrl 185 (264)
T KOG0617|consen 179 HIQGNRL 185 (264)
T ss_pred hccccee
Confidence 7777643
No 168
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.00049 Score=66.18 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=66.2
Q ss_pred CCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccc
Q 003227 204 CPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVL 283 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l 283 (837)
...|+.|++.++...|-..+..+|+|+.|.+|.|..-...++..+...||+|++|++++|.+.+-.-..-...+++|..|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 35677777888766666778888999999999886666677788888899999999999987642222223347889999
Q ss_pred cccccc
Q 003227 284 CALNCP 289 (837)
Q Consensus 284 ~l~~c~ 289 (837)
++.+|.
T Consensus 122 dl~n~~ 127 (260)
T KOG2739|consen 122 DLFNCS 127 (260)
T ss_pred hcccCC
Confidence 999997
No 169
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.66 E-value=0.002 Score=38.55 Aligned_cols=24 Identities=46% Similarity=0.893 Sum_probs=15.5
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHH
Q 003227 178 CPKLKKLRLSGIRDICGDAINALA 201 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~ 201 (837)
||+|++|+|++|++|||.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466666666666666666666554
No 170
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.65 E-value=0.00064 Score=51.20 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=24.5
Q ss_pred CCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCC
Q 003227 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD 264 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~ 264 (837)
|+|++|++++| .++. ..+..+++|++|++++| .++.-. ...+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 34555555554 2222 33445555555555543 121111 1122445555555555543
No 171
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.64 E-value=0.04 Score=49.46 Aligned_cols=124 Identities=12% Similarity=0.167 Sum_probs=96.4
Q ss_pred hHHHHhhCCHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHH
Q 003227 503 KGAIADAGGVKALVDLIFKWSSG----GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK-FEGVQEQAAR 577 (837)
Q Consensus 503 ~~~l~~~g~i~~L~~lL~~~~~~----~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~-~~~~~~~a~~ 577 (837)
...++..+|+..|+++++. ... ..++...++.++..|..+.-..-.......|..++.+..... +..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~-g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEE-GTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHc-CCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4567888999999999985 221 247788899999998876554555666667888888887654 6889999999
Q ss_pred HHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Q 003227 578 ALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 578 ~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
.|.++... ++.....+.++=-++.|+..|+..+++++.+|...+..|-..
T Consensus 83 ILEs~Vl~---S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 83 ILESIVLN---SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHhC---CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 99999985 444455666677789999999999999999998888776544
No 172
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.47 Score=55.00 Aligned_cols=312 Identities=17% Similarity=0.077 Sum_probs=168.7
Q ss_pred HhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC-ChhHHHHHHHHHHHh
Q 003227 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANL 455 (837)
Q Consensus 377 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l 455 (837)
-+..+..|+..+++.|..++..||..+++++...+..+ . ..+|..++.++.-. ++..-..|+-+|+.+
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L------a-----d~vi~svid~~~p~e~~~aWHgacLaLAEL 407 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL------A-----DQVIGSVIDLFNPAEDDSAWHGACLALAEL 407 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH------H-----HHHHHHHHHhcCcCCchhHHHHHHHHHHHH
Confidence 34456888888999999999999999999886555321 1 22345666655443 345555788889888
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhc--------CCHHHHHHHHHHHHhhccCc---cchHHHHhhCCHHHHHHHHHhhCC
Q 003227 456 SVNAKVAKAVAEEGGINILAVLARS--------MNRLVAEEAAGGLWNLSVGE---EHKGAIADAGGVKALVDLIFKWSS 524 (837)
Q Consensus 456 ~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~~~~~a~~~L~~l~~~~---~~~~~l~~~g~i~~L~~lL~~~~~ 524 (837)
+...-......+ ..++.+++.|.. ....+|..|+.++|.++... +.+. +...=.-..|+..+ .+
T Consensus 408 A~rGlLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~Al---FD 482 (1133)
T KOG1943|consen 408 ALRGLLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVAL---FD 482 (1133)
T ss_pred HhcCCcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHh---cC
Confidence 862211111111 135666665533 24569999999999998642 2222 22211111233333 34
Q ss_pred CCHHHHHHHHHHHHHhhcC-CCc-------------------------hHHHHhc-CcHHHHHHHHhcC----CCHHHHH
Q 003227 525 GGDGVLERAAGALANLAAD-DKC-------------------------SMEVALA-GGVHALVMLARSC----KFEGVQE 573 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~-~~~-------------------------~~~l~~~-g~i~~L~~ll~~~----~~~~~~~ 573 (837)
.+...++.|..++...... .+. ...+.+- |....+++-+... =+..+++
T Consensus 483 revncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 483 REVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRE 562 (1133)
T ss_pred chhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHH
Confidence 6667888888888766542 110 1112121 3344444433221 1488999
Q ss_pred HHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHH----HHHH---cC---CH
Q 003227 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRE----AIAA---AG---GV 643 (837)
Q Consensus 574 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~----~l~~---~g---~i 643 (837)
.++.+|.+|+... + .......+++++....+.+...+.-+..+.+.+........ .+.+ +| .+
T Consensus 563 laa~aL~~Ls~~~---p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii 635 (1133)
T KOG1943|consen 563 LAAYALHKLSLTE---P----KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSII 635 (1133)
T ss_pred HHHHHHHHHHHhh---H----HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhc
Confidence 9999999998752 2 12235677888888777777766654444433322211100 0001 11 12
Q ss_pred HHHHHH-HhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 644 EALVVL-AQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 644 ~~L~~l-l~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
+++... ... ....-++......+..++.+ ......+...+.-..+.+.+.+.+ .++..|.+++..++.
T Consensus 636 ~~~~~~~~~r--g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 636 PPICDRYFYR--GQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred cHHHHHHhcc--chHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 222221 111 01134455555666666644 333333333333333444443333 778888888887764
No 173
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.63 E-value=0.0042 Score=45.49 Aligned_cols=55 Identities=29% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 003227 614 EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGL 671 (837)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l 671 (837)
+.+|..|+++|.+++........-.....++.|+.+|.+ +++.||..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d---~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD---DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS---SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHhcC
Confidence 468999999999998774443333444589999999987 7789999999999875
No 174
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.61 E-value=0.019 Score=51.51 Aligned_cols=119 Identities=12% Similarity=0.086 Sum_probs=96.9
Q ss_pred hhhccchHHHHHHHcCCCC------HHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 003227 595 VGQEAGALEALVQLTRSPH------EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGAL 668 (837)
Q Consensus 595 ~~~~~~~i~~L~~lL~~~~------~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L 668 (837)
.++..+|+..|++++.++. .++...++.++..|..+........+...|..+..++.. ...+..+...|+.+|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~-~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNS-SAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcc-ccccchHHHHHHHHH
Confidence 4567789999999998765 367788899999988876656666777788888888876 344789999999999
Q ss_pred HhcccCccc-hhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 669 WGLSVSEAN-CIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 669 ~~l~~~~~~-~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
-++..+... ...+.++-.++.|+.+|+..+++++.+|...+-.|..
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999976444 5666677789999999999999999999988888765
No 175
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.56 E-value=0.0081 Score=49.54 Aligned_cols=66 Identities=29% Similarity=0.347 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHh--cCCHHHHHHHHHHHHhhcc-CccchHHHHhh
Q 003227 444 LQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLAR--SMNRLVAEEAAGGLWNLSV-GEEHKGAIADA 509 (837)
Q Consensus 444 ~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~ 509 (837)
++...++++++++. ++.++..+.+.||++.++.... +.+|-+++.|..++.+|+. ++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 45678899999999 7899999999999999998864 4689999999999999997 45788777654
No 176
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.55 E-value=0.14 Score=48.91 Aligned_cols=181 Identities=15% Similarity=0.057 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH
Q 003227 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS----CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603 (837)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~ 603 (837)
.-..+|+..|.-++++++.+..+.++..---+..+|.. .+.+-.+..+++++..+...++ .+....+...+++|
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd--~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDD--QEVIRFLLTTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCc--HHHHHHHHHhhhHH
Confidence 34568888889999999999999999887777777763 3457788899999999998753 33556667899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHc--------CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCc
Q 003227 604 ALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA--------GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE 675 (837)
Q Consensus 604 ~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~--------g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~ 675 (837)
.+++.+..+++..+.-|..++..+-.++..-.++.+. ..+..++..+.+ .+++.+-..+.++..+++.++
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~--~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS--MPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999998887776554444331 122233333322 488999999999999999999
Q ss_pred cchhhhhcc--CChH--HHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 676 ANCIAIGRE--GGVA--PLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 676 ~~~~~l~~~--~~i~--~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
..|..+..+ +.+. ....+++ +|+..+..-...+.|++
T Consensus 250 rar~aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 250 RARAALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHHHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhc
Confidence 888777653 1111 1333343 35666666666666655
No 177
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.54 E-value=0.8 Score=50.05 Aligned_cols=345 Identities=18% Similarity=0.114 Sum_probs=187.1
Q ss_pred HHHHHhhhcCCH---HHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhcc
Q 003227 382 GLLLSLMQSTQE---DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV 457 (837)
Q Consensus 382 ~~L~~ll~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~ 457 (837)
|.++..|.+.++ ........+|..++.... ..+.+.. +.+..+-...++ .+.+....++.+|.++..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~--------i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~ 72 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ--------ILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLE 72 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh--------HHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 567777755443 456667777777664322 1222211 222233333322 255666777888877754
Q ss_pred Ch-H-----HHHHHHHcCCHHHHHHHHhc-----C--CHHHHHHHHHHHHhhcc--CccchHHHHhhCCHHHHHHHHHh-
Q 003227 458 NA-K-----VAKAVAEEGGINILAVLARS-----M--NRLVAEEAAGGLWNLSV--GEEHKGAIADAGGVKALVDLIFK- 521 (837)
Q Consensus 458 ~~-~-----~~~~i~~~g~i~~L~~lL~~-----~--~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~- 521 (837)
.. + .-....+...++.+.+..-. . ++.+.+.+..++..+.. +.+.++.+.+ .+..+...
T Consensus 73 ~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-----~~~~lf~~~ 147 (415)
T PF12460_consen 73 KKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-----ELYSLFLSP 147 (415)
T ss_pred hcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-----HHHHHHccc
Confidence 21 1 11222233356777666522 1 25566666666666654 2344444433 23332210
Q ss_pred -----h---CC----CCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC
Q 003227 522 -----W---SS----GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (837)
Q Consensus 522 -----~---~~----~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 589 (837)
+ .. .......-...++..+-.+-... .. ...++.++.+....+++..+..++.+++.+.-.....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~ 224 (415)
T PF12460_consen 148 KSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD 224 (415)
T ss_pred cccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh
Confidence 0 00 11122222334444443332221 11 1267788888777766888889999888887531110
Q ss_pred CcccchhhccchHHHHHHHc-CCCCHHHHHHHHHHHHhhc----C-ChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHH
Q 003227 590 SNNSAVGQEAGALEALVQLT-RSPHEGVRQEAAGALWNLS----F-DDRNREAIAAAGGVEALVVLAQSCSNASPGLQER 663 (837)
Q Consensus 590 ~~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~~Ls----~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~ 663 (837)
. .-.+.+..+...+ ...++..+..+..++.-++ . +++.-. ..+..|+.++. ++++...
T Consensus 225 ~------~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~-----~~~~g~~ 288 (415)
T PF12460_consen 225 D------DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLS-----SPELGQQ 288 (415)
T ss_pred h------hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhC-----ChhhHHH
Confidence 0 1123444444444 2333334444444333222 2 222111 23556777764 4677888
Q ss_pred HHHHHHhcccC-ccc--------hhhhhcc----CChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHH-cCCHH
Q 003227 664 AAGALWGLSVS-EAN--------CIAIGRE----GGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE-EGGVP 729 (837)
Q Consensus 664 A~~~L~~l~~~-~~~--------~~~l~~~----~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~-~~~i~ 729 (837)
|+.++.-+..+ ++. -+.+.+. ..+|.|++..+..+.+.+.....||.++..+-.....+-+ ...+|
T Consensus 289 aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlP 368 (415)
T PF12460_consen 289 AAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLP 368 (415)
T ss_pred HHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 88888887755 221 1112221 2567788888877777999999999999876553333333 34588
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 730 ALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 730 ~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
.|++.|..++ +.++..+..+|..+..+.++
T Consensus 369 LLlqsL~~~~-~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 369 LLLQSLSLPD-ADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHHHcCHH
Confidence 8899998775 77999999999999888654
No 178
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.51 E-value=0.14 Score=58.81 Aligned_cols=339 Identities=15% Similarity=0.040 Sum_probs=206.8
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc--C
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--N 458 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~ 458 (837)
.+.+++...++...++...+.....+...-+.. .....-++....++++...+.+..++.-...++. +
T Consensus 318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~----------~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGPS----------ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred hHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc----------cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 467777777777777666665555443221110 1111234566777777777777777777777665 4
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCC----HHHHHHHHHhhCCCCHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGG----VKALVDLIFKWSSGGDGVLERAA 534 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~----i~~L~~lL~~~~~~~~~~~~~a~ 534 (837)
.+....+.....++.+-.++.+.+..++.+.+.....++.--. .... .|.++..+ .+..+.++.+..
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~------k~~ti~~llp~~~~~l---~de~~~V~lnli 458 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP------KERTISELLPLLIGNL---KDEDPIVRLNLI 458 (759)
T ss_pred cccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC------cCcCccccChhhhhhc---chhhHHHHHhhH
Confidence 4555666666667888888888888888877776666653211 2223 34444455 346777777777
Q ss_pred HHHHHhhcCCC-chHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCC
Q 003227 535 GALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (837)
Q Consensus 535 ~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 613 (837)
+.+..+-...+ ..........++.+..+-.... ..++.+..+.+..++.. . ...+.+....+.+...+.+..
T Consensus 459 ~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~-wRvr~ail~~ip~la~q----~--~~~~~~~~~~~l~~~~l~d~v 531 (759)
T KOG0211|consen 459 DKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLL-WRVRLAILEYIPQLALQ----L--GVEFFDEKLAELLRTWLPDHV 531 (759)
T ss_pred HHHHHHHhccCcccchhhhhhhhhhhhhhccchh-HHHHHHHHHHHHHHHHh----h--hhHHhhHHHHHHHHhhhhhhH
Confidence 66655544332 3344555566777777766553 67777777887777763 1 122233334444445566667
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHH
Q 003227 614 EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIAL 693 (837)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~l 693 (837)
.++++.|+..+..++..-...... ...++.++.+... ++...|...+.++..++.- .-..+.....++.+.++
T Consensus 532 ~~Ir~~aa~~l~~l~~~~G~~w~~--~~~i~k~L~~~~q---~~y~~R~t~l~si~~la~v--~g~ei~~~~Llp~~~~l 604 (759)
T KOG0211|consen 532 YSIREAAARNLPALVETFGSEWAR--LEEIPKLLAMDLQ---DNYLVRMTTLFSIHELAEV--LGQEITCEDLLPVFLDL 604 (759)
T ss_pred HHHHHHHHHHhHHHHHHhCcchhH--HHhhHHHHHHhcC---cccchhhHHHHHHHHHHHH--hccHHHHHHHhHHHHHh
Confidence 789999988888776643311111 1235666666654 5677777777776655421 11123444578889999
Q ss_pred hccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 694 ARSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 694 L~s~~~~v~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
..+..+.||.++++.|..+.. +... .+.... ++...+..+++..+|..|..|.+.+...
T Consensus 605 ~~D~vanVR~nvak~L~~i~~~L~~~~----~~~~v~-pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 605 VKDPVANVRINVAKHLPKILKLLDESV----RDEEVL-PLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred ccCCchhhhhhHHHHHHHHHhhcchHH----HHHHHH-HHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 999999999999999999875 3322 232333 4444444455577888888887776543
No 179
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.50 E-value=0.031 Score=55.61 Aligned_cols=180 Identities=19% Similarity=0.131 Sum_probs=105.4
Q ss_pred cCChhHHHHHHHHHHHhcc-C--hHHHHHHHHc--CCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccc-hHHHHhhCCH
Q 003227 439 SWREGLQSEAAKAIANLSV-N--AKVAKAVAEE--GGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH-KGAIADAGGV 512 (837)
Q Consensus 439 ~~~~~~~~~a~~~L~~l~~-~--~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~g~i 512 (837)
+.+=+.|..|+..|..+.. + .+....+.+. ..+..+...+.+....+...|+.++..++..-.. -... -...+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~l 96 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADILL 96 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHHH
Confidence 3455677788888888765 3 2333333221 2345666666667778889999999999864211 2222 22256
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcc
Q 003227 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNN 592 (837)
Q Consensus 513 ~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (837)
|.|+..+ .+....++..|..+|..+...-.....+ .++.+.....+.+ +.++..++..+..+.... +..
T Consensus 97 ~~Ll~~~---~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn-~~vR~~~~~~l~~~l~~~---~~~ 165 (228)
T PF12348_consen 97 PPLLKKL---GDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKN-PQVREECAEWLAIILEKW---GSD 165 (228)
T ss_dssp HHHHHGG---G---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHH---ccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHc---cch
Confidence 7777776 4577889999999999998754411111 1344555555554 999999999999987642 211
Q ss_pred cchhhc----cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Q 003227 593 SAVGQE----AGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 593 ~~~~~~----~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
...+.. ...++.+...+.+.++++|+.|-.+++.+...
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 122222 34778888899999999999999999988654
No 180
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.48 E-value=0.0069 Score=49.94 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc-CCCchHHHHhc
Q 003227 486 AEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALA 553 (837)
Q Consensus 486 ~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~ 553 (837)
+...+.++++++. ++.++..+.+.||++.++....- ...+|-++++|..+++||+. +++++..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567789999996 56999999999999999998754 77889999999999999998 46677665543
No 181
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.00048 Score=66.27 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=27.2
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh----HHhhCCCCCCEeeccCC
Q 003227 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGT 237 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~l~~l~~L~~L~ls~~ 237 (837)
+|+|+.|.++....--..++..++..||+|++|++++| .+.+ ..+..+.+|..|++..|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccC
Confidence 34555555554311112234444555555555555555 2222 23344455555555554
No 182
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.0018 Score=62.41 Aligned_cols=113 Identities=18% Similarity=0.091 Sum_probs=72.7
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEE
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L 258 (837)
.+.+.|+++|| .++|.. +.+.+|.||.|.|+-|.--+-..+..|++|+.|.|..|. |.+-.=..+..++|+|+.|
T Consensus 19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCC-CccHHH---HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 46778888888 777754 345678888888888855555778888888888887763 4333223344678888888
Q ss_pred EeccCCC----CHHHHHHHHhcCcccccccccccccccchhHHHH
Q 003227 259 DVSRTDV----GPITISRLLTSSKSLKVLCALNCPVLEEENNISA 299 (837)
Q Consensus 259 ~l~~~~i----~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~~~~~ 299 (837)
-|..|.. +..--...+..+|+|+.|+ +..+|++.+...
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~A 135 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEEA 135 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHHH
Confidence 7776432 2222333445678888876 333666554444
No 183
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.29 E-value=0.001 Score=50.07 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=38.0
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCC
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGT 237 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~ 237 (837)
|+|++|+++++ .++.-.- .....+++|++|++++| .++. ..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 57788888877 4442111 12335688888888887 3433 56788889999988886
No 184
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.28 E-value=0.0053 Score=36.66 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=15.8
Q ss_pred CCCCCEeeccCCCCCCHHHHHHHH
Q 003227 226 VLSVRFLSVAGTSNMKWGVVSQVW 249 (837)
Q Consensus 226 l~~L~~L~ls~~~~i~~~~l~~~~ 249 (837)
|++|++|+|++|.++||.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456667777777777777666654
No 185
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.25 E-value=0.0023 Score=69.96 Aligned_cols=187 Identities=21% Similarity=0.212 Sum_probs=98.4
Q ss_pred cceeeecCcccchHHHHH------cCCCccEEecCCCCCCCHHHHHHHHhcCC----CCCeEEeCCCCCCCCCHHHHHHH
Q 003227 105 LQKLRFRGAESADSIIHL------QARNLRELSGDYCRKITDATLSVIVARHE----ALESLQLGPDFCERITSDAVKAI 174 (837)
Q Consensus 105 L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~c~~~~~~~l~~~~~~~~----~L~~L~l~~~~~~~~~~~~l~~l 174 (837)
+.++.|.+|...+..... ..++|..|+++++. +.+++...+....+ .|+.|++. .| .+++.+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~--~c-~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELV--SC-SLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhh--cc-cccccchHHH
Confidence 445555555444322111 44566666666655 55655555544433 34455553 34 4444444433
Q ss_pred Hhc---CCCCCEEEecCCCCCCHHHHHHHHh-------hCCCccEEEecCCCCCChHH-------hhCCCC-CCEeeccC
Q 003227 175 ALC---CPKLKKLRLSGIRDICGDAINALAK-------LCPNLTDIGFLDCLNVDEVA-------LGNVLS-VRFLSVAG 236 (837)
Q Consensus 175 ~~~---~~~L~~L~l~~~~~i~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~-------l~~l~~-L~~L~ls~ 236 (837)
+.. ++.++.++++.+. +...+...+.+ ...++++|++++| .+++.. +...+. +..|++..
T Consensus 165 ~~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 322 4556666666553 22333222211 1245777777776 444422 233344 55677765
Q ss_pred CCCCCHHHHHHHHhcCC----CccEEEeccCCCCHHHHHHHHh---cCcccccccccccccccchhHHHH
Q 003227 237 TSNMKWGVVSQVWHKLP----KLVGLDVSRTDVGPITISRLLT---SSKSLKVLCALNCPVLEEENNISA 299 (837)
Q Consensus 237 ~~~i~~~~l~~~~~~~~----~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~l~l~~c~~i~~~~~~~~ 299 (837)
| .+.|.++..+.+.++ .++.++++.|.+++.+...+.+ .|+.++.+.+.+.+ +++.+....
T Consensus 243 n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~ 310 (478)
T KOG4308|consen 243 N-KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELL 310 (478)
T ss_pred c-CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHH
Confidence 4 566666666554433 4477777777776665554433 56777777777666 666664333
No 186
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.20 E-value=0.12 Score=58.80 Aligned_cols=169 Identities=16% Similarity=0.034 Sum_probs=120.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCC
Q 003227 563 ARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGG 642 (837)
Q Consensus 563 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~ 642 (837)
+.+.++.....+.-.+|..++.+.+ . ....+.+++...+.|.++++..-.-|.+.+...+....+ +
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m---------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----a 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M---------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----A 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----H
Confidence 4444444444555566667665421 1 234566777777889999998888888888876644444 4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHH
Q 003227 643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRI 722 (837)
Q Consensus 643 i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i 722 (837)
+..+..=+++ +++.+|..|.+++..+-..+ +. ...++++.+++.++++.||..|+-++..+-.- .....
T Consensus 94 vNti~kDl~d---~N~~iR~~AlR~ls~l~~~e-----l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~ 162 (757)
T COG5096 94 VNTIQKDLQD---PNEEIRGFALRTLSLLRVKE-----LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLY 162 (757)
T ss_pred HHHHHhhccC---CCHHHHHHHHHHHHhcChHH-----HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhh
Confidence 5666666665 99999999999998864332 11 22678889999999999999999999998742 22234
Q ss_pred HHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 723 VEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 723 ~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
.+.|.+..+..++.+.+ |.+...|..+|..+...
T Consensus 163 ~~~g~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 163 HELGLIDILKELVADSD-PIVIANALASLAEIDPE 196 (757)
T ss_pred hcccHHHHHHHHhhCCC-chHHHHHHHHHHHhchh
Confidence 45667788888888765 88999999999998766
No 187
>PRK14707 hypothetical protein; Provisional
Probab=96.20 E-value=4.8 Score=50.65 Aligned_cols=395 Identities=17% Similarity=0.113 Sum_probs=204.9
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHHHHHhhhcCcCchhhHHHhhhHHHHHHhh-hcCCHHHHHHHHHHhhccccccC
Q 003227 333 FLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLM-QSTQEDVQERAATGLATFVVIND 411 (837)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~~l~~l~s~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~ 411 (837)
+.+|-+...|.+-....+.+ +.+. ..+..-+..++|...++.| +-++..+...|+..|..=.
T Consensus 214 ~sKWp~~~~c~~aa~~la~~---l~~~----------~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl---- 276 (2710)
T PRK14707 214 LCKWPDTPDCGNAVSALAER---LADE----------SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERL---- 276 (2710)
T ss_pred HhcCCCChhHHHHHHHHHHH---HcCc----------HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHH----
Confidence 56677777777666665554 2211 1222223455666666766 5566667777776665411
Q ss_pred cccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHH-hccChHHHHHHHHcCCHHHHHHHHhc-C-CHHHHH
Q 003227 412 ENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIAN-LSVNAKVAKAVAEEGGINILAVLARS-M-NRLVAE 487 (837)
Q Consensus 412 ~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~L~~lL~~-~-~~~~~~ 487 (837)
..++...+. .+.-.+...++.|+. ++..+-..|+..|.. +..+++.++.+ +..++...++.|+. + +...+.
T Consensus 277 ---~~~~~l~~a-l~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~ 351 (2710)
T PRK14707 277 ---VDDPGLRKA-LDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAA 351 (2710)
T ss_pred ---hhhHHHHHh-cCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHH
Confidence 112222222 233334455555555 566666666666654 66677766443 33346666666654 4 445555
Q ss_pred HHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCC
Q 003227 488 EAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK 567 (837)
Q Consensus 488 ~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~ 567 (837)
.|...-..+..+++.++.+- ..++...++.+.. =.+++.-+..|...-..+..+++.+..+-.. .|..++.-|..-+
T Consensus 352 Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsK-Wp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q-~van~lnalsKWP 428 (2710)
T PRK14707 352 AVSALAERLVADPELRKDLE-PQGVSSVLNALSK-WPDTPVCAAAASALAEHVVDDLELRKGLDPQ-GVSNALNALAKWP 428 (2710)
T ss_pred HHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhc-CCCchHHHHHHHHHHHHhccChhhhhhcchh-hHHHHHHHhhcCC
Confidence 55555556777776666654 4467777777764 2234444555555555666778888777544 4555566665555
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC-CCHHHHHHHHHHHH-hhcCChhhHHHHHHcCCHHH
Q 003227 568 FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS-PHEGVRQEAAGALW-NLSFDDRNREAIAAAGGVEA 645 (837)
Q Consensus 568 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~-~Ls~~~~~~~~l~~~g~i~~ 645 (837)
+..+-..++.+|..-..+ ..+.+..+.-.+ |...++.++. ++..+-..|+..|. .|+.+.+.++.+--.+....
T Consensus 429 d~~~C~~aa~~lA~~la~---d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~ 504 (2710)
T PRK14707 429 DLPICGQAVSALAGRLAH---DTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIA 504 (2710)
T ss_pred cchhHHHHHHHHHHHHhc---cHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHH
Confidence 566667777776665544 233333322223 3334444444 34445545555554 46666555554433333333
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHh-ccCCHHHHHHHHHHHHHHcCCcccHHHHHH
Q 003227 646 LVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA-RSEAEDVHETAAGALWNLAFNPGNALRIVE 724 (837)
Q Consensus 646 L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL-~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 724 (837)
|-.+-+ .+......+.+.++-..+.........+... .+..+++.+ +.++....+.++..|..+..+......-+.
T Consensus 505 L~aLSK--~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~-~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~ 581 (2710)
T PRK14707 505 LHSLSK--WPDTPICAEAASALAERVVDELQLRKAFDAH-QVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLH 581 (2710)
T ss_pred HHHhhc--CCCcHHHHHHHHHHHHHhccchhhhhhhhhH-HHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhh
Confidence 333322 2344444444445444544333333322222 233334444 444445555555555554433333333344
Q ss_pred cCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 725 EGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 725 ~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.-.|..+++.++.=........|+..|+......+
T Consensus 582 aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~ 616 (2710)
T PRK14707 582 RQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEP 616 (2710)
T ss_pred hhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccCh
Confidence 55677777777653334455556666665554444
No 188
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=3 Score=46.76 Aligned_cols=313 Identities=13% Similarity=0.073 Sum_probs=184.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (837)
..+-+=|+++++-+|-.+.+.|++|- +++..+ -.+|.+...|.+..+-+|+.|.-+++.+-...+.
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLk---------E~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~~ 167 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLK---------EPELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH 167 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcC---------cHHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh
Confidence 44555578888889988888888743 122222 3467888899999999999999999887654210
Q ss_pred HHHHHHcCCHHHHH-HHH-hcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003227 462 AKAVAEEGGINILA-VLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (837)
Q Consensus 462 ~~~i~~~g~i~~L~-~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (837)
+. . -.|.|+ ..| ...++..++.|...|...-. ..++..|.....+.++-++.++-..+..++.
T Consensus 168 ---L~-p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~----------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irk 232 (948)
T KOG1058|consen 168 ---LI-P-DAPELIESFLLTEQDPSCKRNAFLMLFTTDP----------ERALNYLLSNIDQIPSFNDSLQLVIVELIRK 232 (948)
T ss_pred ---hc-C-ChHHHHHHHHHhccCchhHHHHHHHHHhcCH----------HHHHHHHHhhHhhccCccHHHHHHHHHHHHH
Confidence 00 1 123333 333 55788888888777665542 2355566665555455566777777777777
Q ss_pred hhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC-CCHHHHH
Q 003227 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS-PHEGVRQ 618 (837)
Q Consensus 540 l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~ 618 (837)
.+...... +...|+.+..+|.+.+ +.+...|+++|.+++.. +..- ..+...++.++-. ++..++.
T Consensus 233 v~~~~p~~----~~~~i~~i~~lL~sts-saV~fEaa~tlv~lS~~----p~al-----k~Aa~~~i~l~~kesdnnvkl 298 (948)
T KOG1058|consen 233 VCLANPAE----KARYIRCIYNLLSSTS-SAVIFEAAGTLVTLSND----PTAL-----KAAASTYIDLLVKESDNNVKL 298 (948)
T ss_pred HHhcCHHH----hhHHHHHHHHHHhcCC-chhhhhhcceEEEccCC----HHHH-----HHHHHHHHHHHHhccCcchhh
Confidence 66522211 2235788889998875 88888999998888863 2111 1223444444322 2333333
Q ss_pred HHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhc---
Q 003227 619 EAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR--- 695 (837)
Q Consensus 619 ~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~--- 695 (837)
-..--|..+. ..+...+ .|.+-.++++|.+ ++-+++..+......++.+. -+..++.+|+
T Consensus 299 Ivldrl~~l~--~~~~~il--~~l~mDvLrvLss---~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~ 361 (948)
T KOG1058|consen 299 IVLDRLSELK--ALHEKIL--QGLIMDVLRVLSS---PDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEV 361 (948)
T ss_pred hhHHHHHHHh--hhhHHHH--HHHHHHHHHHcCc---ccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHH
Confidence 3333333333 1122222 1235555666665 88999999888887766542 2233333331
Q ss_pred --------cCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 696 --------SEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 696 --------s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
+++...|..-.+++...+. .|+.. +.+++.|++.+.+.+ +........-+....+.-++
T Consensus 362 ~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N-~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 362 MKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSN-EAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred HhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHhCch
Confidence 1234556677777777765 45443 355779999998876 43333333444444444443
No 189
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.17 E-value=0.52 Score=54.68 Aligned_cols=248 Identities=13% Similarity=0.054 Sum_probs=146.4
Q ss_pred HHHHhCcHHHHHHHHhc-----CChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHh----cCC----HHHHHHH
Q 003227 423 AVMKDGGIRLLLDLAKS-----WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR----SMN----RLVAEEA 489 (837)
Q Consensus 423 ~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~----~~~----~~~~~~a 489 (837)
.+.+.|++..++.++.+ .........+..|..++.-+.+|+++.+.|+++.|+..++ ... +.+.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 46678999999999987 2345666788888888889999999999999999998875 233 6777777
Q ss_pred HHHHHhhccCccch-----HHHHhhC-----C---HHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCc-hHHHHhcC
Q 003227 490 AGGLWNLSVGEEHK-----GAIADAG-----G---VKALVDLIFKW-SSGGDGVLERAAGALANLAADDKC-SMEVALAG 554 (837)
Q Consensus 490 ~~~L~~l~~~~~~~-----~~l~~~g-----~---i~~L~~lL~~~-~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~g 554 (837)
+.++..+....... ....... . +..+++.+.+. ...++.+....+++|-+|+.+.+. .+.+++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 77777665432111 1111111 2 55556555431 234688999999999999986543 3444332
Q ss_pred cHHHHHHHHh--cCCCHHHHHHHHHHHHHHhcCCCCC---CcccchhhccchHHHHHHHcCCC--------CHHH-----
Q 003227 555 GVHALVMLAR--SCKFEGVQEQAARALANLAAHGDSN---SNNSAVGQEAGALEALVQLTRSP--------HEGV----- 616 (837)
Q Consensus 555 ~i~~L~~ll~--~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~~i~~L~~lL~~~--------~~~~----- 616 (837)
+.+.+++=. ....++- ...+.+++.++..=+.+ ...+..+.+.|++...+.+|... +++-
T Consensus 271 -F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred -HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 122222111 0110111 22344555554432112 24566777889998888876542 2222
Q ss_pred ---HHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCc
Q 003227 617 ---RQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE 675 (837)
Q Consensus 617 ---~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~ 675 (837)
...++..|.-|+......+.++..++++.+ .-|.. -+.+..+-..|=.+|-.++.++
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~l-H~LEq-vss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLLPLL-HRLEQ-VSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHH-HHhhc-CCCccchHHHHHHHHHHHhcCh
Confidence 234677888888875554455666677444 44433 1234455555555555555443
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.17 E-value=0.44 Score=55.82 Aligned_cols=226 Identities=19% Similarity=0.113 Sum_probs=143.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC
Q 003227 512 VKALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (837)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 589 (837)
++.+...++. -...+.+..|+..|..++. +++.+- ..++|-++.+++++. ..||..|+.+|..+...-.+-
T Consensus 424 vs~lts~IR~--lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 424 VSVLTSCIRA--LKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDI 496 (1431)
T ss_pred HHHHHHHHHh--hhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCC
Confidence 5566666653 3456788899999999987 344331 236899999999886 999999999998886543223
Q ss_pred CcccchhhccchHHHHHHHcCC-CCHHHHHHHHHHHHhhcCCh------------------hh------------HHHHH
Q 003227 590 SNNSAVGQEAGALEALVQLTRS-PHEGVRQEAAGALWNLSFDD------------------RN------------REAIA 638 (837)
Q Consensus 590 ~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~------------------~~------------~~~l~ 638 (837)
+..-..+.-+=.+|.|-.++.+ ....+|..-+..|..||... ++ .+.+.
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 3322333334566777788777 44456666555555553321 00 11111
Q ss_pred HcCCHHHHH-HHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhc----cCChHHHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 639 AAGGVEALV-VLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR----EGGVAPLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 639 ~~g~i~~L~-~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~----~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
+ .|+.++ .++.+ +++-|+..-+..+.-||.- +++ .-.++.|+..|.+.+...|.+--..+.-++
T Consensus 577 ~--~V~~~v~sLlsd---~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs 645 (1431)
T KOG1240|consen 577 H--TVEQMVSSLLSD---SPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS 645 (1431)
T ss_pred H--HHHHHHHHHHcC---CchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceE
Confidence 1 233333 34443 5567777777777766621 111 125778889999999888877766666555
Q ss_pred CCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCC
Q 003227 714 FNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGR 758 (837)
Q Consensus 714 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~ 758 (837)
....-+ -++++.+|.|.+-+.++. +.|-..|..+|..|.+..
T Consensus 646 i~VG~r--s~seyllPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 646 IFVGWR--SVSEYLLPLLQQGLTDGE-EAVIVSALGSLSILIKLG 687 (1431)
T ss_pred EEEeee--eHHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHhc
Confidence 422211 135667888888898775 889999999999987753
No 191
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.16 E-value=0.093 Score=58.68 Aligned_cols=242 Identities=18% Similarity=0.105 Sum_probs=152.2
Q ss_pred ccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHH
Q 003227 497 SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA-NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQA 575 (837)
Q Consensus 497 ~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a 575 (837)
+....-+...++.||...|+++... ..+..+..+..+|. .+....+ + ....++.+...+.....-.-...+
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~---q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQ---QFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHH---hchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHH
Confidence 3445677788899999999999875 55566666666666 2221111 0 012344444444322111112468
Q ss_pred HHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhh-HHHHHH-cCCHHHHHHHHhhc
Q 003227 576 ARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIAA-AGGVEALVVLAQSC 653 (837)
Q Consensus 576 ~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~-~g~i~~L~~ll~~~ 653 (837)
+.++.||+.. +...+..+.....++.+-.++...++..+..++..+.||..++.. ...+++ ....+.....+..
T Consensus 563 L~altnLas~---s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~- 638 (748)
T KOG4151|consen 563 LEALTNLASI---SESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV- 638 (748)
T ss_pred HHHhhcccCc---chhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-
Confidence 8889998876 333444466666777777778888999999999999999998655 445555 3456666666665
Q ss_pred CCCCHHHHHHHHHHHHhcccC-ccchh-hhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCC-cccHHHHHHcCCHHH
Q 003227 654 SNASPGLQERAAGALWGLSVS-EANCI-AIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN-PGNALRIVEEGGVPA 730 (837)
Q Consensus 654 ~~~~~~v~~~A~~~L~~l~~~-~~~~~-~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~-~~~~~~i~~~~~i~~ 730 (837)
.+.....++++++.-++.. +.++. ......+...+..++.++++++|...+....|+... .+-...+.....++.
T Consensus 639 --~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~ 716 (748)
T KOG4151|consen 639 --ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMEL 716 (748)
T ss_pred --hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence 7788888888888877654 44444 333456788899999999999999999998886542 222223333333333
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHH
Q 003227 731 LVHLCSSSGSKMARFMAALALAY 753 (837)
Q Consensus 731 L~~ll~~~~~~~~~~~a~~aL~~ 753 (837)
+..+-... ....++.++.+|..
T Consensus 717 l~~~~~~~-~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 717 LSGLQKLN-RAPKREDAAPCLSA 738 (748)
T ss_pred HHHHHHhh-hhhhhhhhhhHHHH
Confidence 33322222 23345555555544
No 192
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.001 Score=64.18 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=34.5
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCC
Q 003227 126 NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCP 205 (837)
Q Consensus 126 ~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 205 (837)
+.+.|++.+|. ++|-++ ...+|.|+.|.|+ .+.|+. +..+ ..|.+|++|.|..+ .|.+-.=..-.++.|
T Consensus 20 ~vkKLNcwg~~-L~DIsi---c~kMp~lEVLsLS---vNkIss--L~pl-~rCtrLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISI---CEKMPLLEVLSLS---VNKISS--LAPL-QRCTRLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred HhhhhcccCCC-ccHHHH---HHhcccceeEEee---cccccc--chhH-HHHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 44555555554 444322 3445555555553 223322 1122 23555555555543 232211111123445
Q ss_pred CccEEEecCCC
Q 003227 206 NLTDIGFLDCL 216 (837)
Q Consensus 206 ~L~~L~l~~~~ 216 (837)
+|+.|.|..|+
T Consensus 89 sLr~LWL~ENP 99 (388)
T KOG2123|consen 89 SLRTLWLDENP 99 (388)
T ss_pred hhhhHhhccCC
Confidence 55555555543
No 193
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.11 E-value=0.0025 Score=64.78 Aligned_cols=88 Identities=15% Similarity=0.208 Sum_probs=56.3
Q ss_pred HhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCC-CHH------HHHHH--------------HhcCCCccE
Q 003227 201 AKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNM-KWG------VVSQV--------------WHKLPKLVG 257 (837)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i-~~~------~l~~~--------------~~~~~~L~~ 257 (837)
.+..++|..|++++| .+.+ ..+..+..|+.|++|.|.+- -.+ .+..+ ..+..+|..
T Consensus 431 l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 345689999999998 4554 34566777999999988321 111 11111 134567888
Q ss_pred EEeccCCCCHHHHHHHHhcCccccccccccccccc
Q 003227 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (837)
Q Consensus 258 L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~ 292 (837)
||+..|++. .+-.++.+|++|++|++.|++ +.
T Consensus 510 LDL~nNdlq--~IPp~LgnmtnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 510 LDLQNNDLQ--QIPPILGNMTNLRHLELDGNP-FR 541 (565)
T ss_pred eccCCCchh--hCChhhccccceeEEEecCCc-cC
Confidence 888887652 222334468889999998887 44
No 194
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.03 E-value=0.8 Score=52.29 Aligned_cols=165 Identities=15% Similarity=0.052 Sum_probs=118.0
Q ss_pred CCHHHHHHH-HHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH
Q 003227 525 GGDGVLERA-AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603 (837)
Q Consensus 525 ~~~~~~~~a-~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~ 603 (837)
.+...+..| -.++..++.+++... ..+.+++... ..|.++++-.---|.+.+.. .+ .... -++.
T Consensus 31 ~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~---~P-~~~l----LavN 95 (757)
T COG5096 31 SNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKL---KP-ELAL----LAVN 95 (757)
T ss_pred cChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhcc---CH-HHHH----HHHH
Confidence 444444444 467777777666332 3566777777 44588888887777777764 22 2222 2466
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhc
Q 003227 604 ALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR 683 (837)
Q Consensus 604 ~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~ 683 (837)
.+.+=++++++.+|-.|++.+..+-... +.+ ..++++.+++.+ +++.||..|+.++.++-.-. .....+
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~~e-----l~~-~~~~~ik~~l~d---~~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRVKE-----LLG-NIIDPIKKLLTD---PHAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcChHH-----HHH-HHHHHHHHHccC---CcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 7777788999999999999998774421 222 257888888887 99999999999999986421 123556
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHHcCC
Q 003227 684 EGGVAPLIALARSEAEDVHETAAGALWNLAFN 715 (837)
Q Consensus 684 ~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 715 (837)
.|.+..+..++.+.+|.|..+|..+|..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 67788888888999999999999999988754
No 195
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.99 E-value=0.61 Score=45.69 Aligned_cols=193 Identities=12% Similarity=-0.000 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHHHhhcC-CCchHHHHhc-CcHHHHHHHHhc------CCC--H---HHHHHHHHHHHHHhcCCCCCCc
Q 003227 525 GGDGVLERAAGALANLAAD-DKCSMEVALA-GGVHALVMLARS------CKF--E---GVQEQAARALANLAAHGDSNSN 591 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~-g~i~~L~~ll~~------~~~--~---~~~~~a~~~L~~l~~~~~~~~~ 591 (837)
-+++.++.|+.-|+.--.. ++....+... |.+..|++=+-+ +.. . .-...|...+..++. .++
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs----hpe 82 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS----HPE 82 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-----TT
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc----ChH
Confidence 3567777776666554443 3333444444 777766663322 110 1 223467777778888 567
Q ss_pred ccchhhccchHHHHHHHcCCC-----CHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH
Q 003227 592 NSAVGQEAGALEALVQLTRSP-----HEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERA 664 (837)
Q Consensus 592 ~~~~~~~~~~i~~L~~lL~~~-----~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A 664 (837)
.+..+.+..+.-.|..+|... -+.+|...+++++.|... .+....+.+.+.++..++.++. +++-.+.-|
T Consensus 83 tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~---GselSKtvA 159 (262)
T PF04078_consen 83 TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF---GSELSKTVA 159 (262)
T ss_dssp THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH---S-HHHHHHH
T ss_pred HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh---ccHHHHHHH
Confidence 788888888877777777553 356888899999999885 4457778888999999999998 899999999
Q ss_pred HHHHHhcccCccchhhhhc--------cCChHHHH-HHhccCCHHHHHHHHHHHHHHcCCcccHHHHHH
Q 003227 665 AGALWGLSVSEANCIAIGR--------EGGVAPLI-ALARSEAEDVHETAAGALWNLAFNPGNALRIVE 724 (837)
Q Consensus 665 ~~~L~~l~~~~~~~~~l~~--------~~~i~~L~-~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 724 (837)
..++..+-.++.+-..+.. ...+..++ .+..++++.+..+...+-..|+.++..+..+.+
T Consensus 160 tfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 160 TFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999988766544332222 11233333 334678899999999999999999988877664
No 196
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.99 E-value=0.0032 Score=61.31 Aligned_cols=127 Identities=24% Similarity=0.246 Sum_probs=84.4
Q ss_pred cCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHh-hCCC
Q 003227 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL-GNVL 227 (837)
Q Consensus 149 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l-~~l~ 227 (837)
.+..|++|+|++ +.|+. +..-.+-.|.++.|+++.+ .++.- ..++ .+++|.+|||++|....-++. ..+-
T Consensus 282 TWq~LtelDLS~---N~I~~--iDESvKL~Pkir~L~lS~N-~i~~v--~nLa-~L~~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSG---NLITQ--IDESVKLAPKLRRLILSQN-RIRTV--QNLA-ELPQLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred hHhhhhhccccc---cchhh--hhhhhhhccceeEEecccc-ceeee--hhhh-hcccceEeecccchhHhhhhhHhhhc
Confidence 456789999963 23321 2222234689999999988 44332 2233 469999999999944333555 4677
Q ss_pred CCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCH-HHHHHHHhcCcccccccccccc
Q 003227 228 SVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGP-ITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 228 ~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~-~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
+++.|.|++|.--+-.|+. .+.+|..||+++|+|.. +.+.. +.++|.|+++.|.+++
T Consensus 353 NIKtL~La~N~iE~LSGL~----KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGLR----KLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred CEeeeehhhhhHhhhhhhH----hhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence 8999999987322223332 35569999999998853 33333 3458999999999988
No 197
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=1.8 Score=48.63 Aligned_cols=255 Identities=14% Similarity=0.152 Sum_probs=155.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch-
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA- 459 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~- 459 (837)
+.+-.++.+..+.+...|+.++..+.......++ . ++..|--+++++.+.+|..|.++|..++. .|
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~----------p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA----------P--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc----------h--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 5666677888899999999999987754433211 1 56677778889999999999999999875 22
Q ss_pred -------HHHHHHHHcCC---HHHHHHHHhcCCHH----HHHHHHHHHHhhccCc-----cchHHH------HhhCCHHH
Q 003227 460 -------KVAKAVAEEGG---INILAVLARSMNRL----VAEEAAGGLWNLSVGE-----EHKGAI------ADAGGVKA 514 (837)
Q Consensus 460 -------~~~~~i~~~g~---i~~L~~lL~~~~~~----~~~~a~~~L~~l~~~~-----~~~~~l------~~~g~i~~ 514 (837)
+.-..|-+.+- -.++..+|+.+... +.........+++..- +.-..+ -..+.+.-
T Consensus 316 ~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~F 395 (865)
T KOG1078|consen 316 AVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNF 395 (865)
T ss_pred cccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHH
Confidence 22222222211 33444555544332 3333344444444321 000111 12233555
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCccc
Q 003227 515 LVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNS 593 (837)
Q Consensus 515 L~~lL~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 593 (837)
|.++|++ ++.-+.+.....++..+.. +++.+. .++..|..++.+.. ...-+...|.-+...+...+
T Consensus 396 L~~~Lr~--eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce---~~~i~~rILhlLG~EgP~a~--- 462 (865)
T KOG1078|consen 396 LSNMLRE--EGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE---FTQIAVRILHLLGKEGPKAP--- 462 (865)
T ss_pred HHHHHHh--ccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc---chHHHHHHHHHHhccCCCCC---
Confidence 5666663 4555667777777776665 444443 24666777777543 34566777777766542221
Q ss_pred chhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhh-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 594 AVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 594 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
.....+..+.+...-.+..+|..|+.+|.++....+. +. ...-.|.+++.+ .+.++|..|...|.++-
T Consensus 463 ---~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D---~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 ---NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLND---SDDEVRDRATFYLKNLE 531 (865)
T ss_pred ---CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcC---chHHHHHHHHHHHHHhh
Confidence 2245566777766667888999999999998854322 21 123345566665 89999999999998876
No 198
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.90 E-value=0.001 Score=72.55 Aligned_cols=104 Identities=20% Similarity=0.157 Sum_probs=52.3
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~ 254 (837)
-.|.|++|+|+.+ ++++-. ....||+|++|||++|..-.- .+..+|. |+.|.+++|.--+-.+ + .++.+
T Consensus 185 ll~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g---i-e~Lks 255 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG---I-ENLKS 255 (1096)
T ss_pred HHHHhhhhccchh-hhhhhH---HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh---H-Hhhhh
Confidence 3456777777766 343321 233567777777776632111 1222333 7777776653222222 1 34566
Q ss_pred ccEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 255 L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
|+.||+++|-+.+-.=...+-.+..|+.|+|.|++
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77777776533222111122224556677776666
No 199
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.89 E-value=0.53 Score=45.05 Aligned_cols=156 Identities=14% Similarity=0.016 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhcC--CCchHHHHhcCcHHH
Q 003227 483 RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW--SSGGDGVLERAAGALANLAAD--DKCSMEVALAGGVHA 558 (837)
Q Consensus 483 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~--~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~ 558 (837)
..-...|...|.-++.+++.+..+.++..--.+-.+|... +...+-++-.++++++.|..+ .+....+...++||.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3345677778888889999999999986655566666431 344567899999999999984 345677888899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhcc----chH-HHHHHHcCCCCHHHHHHHHHHHHhhcCChhh
Q 003227 559 LVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA----GAL-EALVQLTRSPHEGVRQEAAGALWNLSFDDRN 633 (837)
Q Consensus 559 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~----~~i-~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 633 (837)
.++.++.++ +..+..|..++..+-..+.--.+.+...-.- ..+ ..+.++.+.+++.+.+.++.+..+|+.++..
T Consensus 173 CLrime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 173 CLRIMESGS-ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHHHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 999999997 7778888888888766422111111111101 112 2233455667888899999999999998877
Q ss_pred HHHHHH
Q 003227 634 REAIAA 639 (837)
Q Consensus 634 ~~~l~~ 639 (837)
|..+..
T Consensus 252 r~aL~~ 257 (293)
T KOG3036|consen 252 RAALRS 257 (293)
T ss_pred HHHHHh
Confidence 766643
No 200
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.85 E-value=0.032 Score=58.07 Aligned_cols=299 Identities=20% Similarity=0.103 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHHhccChH-HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC------ccchHHHHhhCCHHHH
Q 003227 443 GLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG------EEHKGAIADAGGVKAL 515 (837)
Q Consensus 443 ~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~------~~~~~~l~~~g~i~~L 515 (837)
.++..|..+|..++..-. .+..+++. ...+..-+.+..+.+++.+...+..+... |+..+.-...|.+-.+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~l--~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLMEL--GRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 456666666666654321 12222111 11112222346888999998888877541 2222111111111111
Q ss_pred ------HHHHHhhCCCCHHHHHHHHHHHHHhhcCC-----CchHHHHhcCcHHHHHHHHhcCC---CHHHHHHHHHHHHH
Q 003227 516 ------VDLIFKWSSGGDGVLERAAGALANLAADD-----KCSMEVALAGGVHALVMLARSCK---FEGVQEQAARALAN 581 (837)
Q Consensus 516 ------~~lL~~~~~~~~~~~~~a~~~L~~l~~~~-----~~~~~l~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~ 581 (837)
-.... .+..+..+..++.++.++...+ +.++. ....++...+ +.-+...|.+++.-
T Consensus 348 ~l~~p~~~~~Y--Ds~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T--------~~~~Fl~GC~d~~~~lv~~aA~Ra~~V 417 (728)
T KOG4535|consen 348 MLNGPLPRALY--DSEHPTLQASACDALSSILPEAFSNLPNDRQT--------LCITFLLGCNDSKNRLVKAAASRALGV 417 (728)
T ss_pred HccCCChhhhh--hhcCCCchhHHHHHHhhcCchhhcCCCCcchh--------hhHHHHhcccchHHHHHHHHHHhhcee
Confidence 11221 3344556777788888776521 21111 1122222222 23344556666555
Q ss_pred HhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-----hh---hHHHHHHcCCHHHHHHHHhhc
Q 003227 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-----DR---NREAIAAAGGVEALVVLAQSC 653 (837)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-----~~---~~~~l~~~g~i~~L~~ll~~~ 653 (837)
..-+. .-......-......+...+.++.-..|+.+++++.|++.. +. ..+.+.. -.+..+++....+
T Consensus 418 yVLHp---~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~ 493 (728)
T KOG4535|consen 418 YVLHP---CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEA 493 (728)
T ss_pred EEecc---chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHh
Confidence 55541 11112222234445555666666677899999999998652 11 1222211 1244444444333
Q ss_pred CCCCHHHHHHHHHHHHhcccC----ccchhhhhccCChHHHHHH-hccCCHHHHHHHHHHHHHHcCCcccH--HHHHHcC
Q 003227 654 SNASPGLQERAAGALWGLSVS----EANCIAIGREGGVAPLIAL-ARSEAEDVHETAAGALWNLAFNPGNA--LRIVEEG 726 (837)
Q Consensus 654 ~~~~~~v~~~A~~~L~~l~~~----~~~~~~l~~~~~i~~L~~l-L~s~~~~v~~~a~~~L~~l~~~~~~~--~~i~~~~ 726 (837)
...+..|+.+|..+|.|+..- .+..-.....+.+..+..- .-.+.-.|+=+|+.++.||..++.-. ..=+...
T Consensus 494 ~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~ 573 (728)
T KOG4535|consen 494 SADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQ 573 (728)
T ss_pred hhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHH
Confidence 446788999999999998742 1111111222233333322 23356789999999999999876542 1112234
Q ss_pred CHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 727 GVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 727 ~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
+.+.|..++.+..+-.+|..|+.+|..-...
T Consensus 574 ~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 574 AFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 5788999998877788999999999876543
No 201
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.81 E-value=0.78 Score=53.29 Aligned_cols=246 Identities=15% Similarity=0.142 Sum_probs=148.6
Q ss_pred HHhhCCHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHh---cCCC----HHHHHHHH
Q 003227 506 IADAGGVKALVDLIFKWS--SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR---SCKF----EGVQEQAA 576 (837)
Q Consensus 506 l~~~g~i~~L~~lL~~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~---~~~~----~~~~~~a~ 576 (837)
+.+.||+..++.++.... +...++....+..|...+.-..+|+.+.+.|+++.|+..+. .... .++-+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 447889999999997522 23456777888899999999999999999999999998775 2211 45556666
Q ss_pred HHHHHHhcCCCCCCc-cc----chh----hccchHHHHHHHcCCC----CHHHHHHHHHHHHhhcCChhh-HHHHHHcCC
Q 003227 577 RALANLAAHGDSNSN-NS----AVG----QEAGALEALVQLTRSP----HEGVRQEAAGALWNLSFDDRN-REAIAAAGG 642 (837)
Q Consensus 577 ~~L~~l~~~~~~~~~-~~----~~~----~~~~~i~~L~~lL~~~----~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~ 642 (837)
.++..+......... .. ... .+..-+..+++.+.++ ++.+....+.+|..|+...+. -+.++++
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 666666543211110 00 000 1234477777777654 688999999999999998544 4444443
Q ss_pred HHHHHHHHhh--cCCCCHHHHHHHHHHHHhcccC-------ccchhhhhccCChHHHHHHhccC--------CHH-----
Q 003227 643 VEALVVLAQS--CSNASPGLQERAAGALWGLSVS-------EANCIAIGREGGVAPLIALARSE--------AED----- 700 (837)
Q Consensus 643 i~~L~~ll~~--~~~~~~~v~~~A~~~L~~l~~~-------~~~~~~l~~~~~i~~L~~lL~s~--------~~~----- 700 (837)
+.+.+.+=.- ....+.. ..+..++.++.. ...+..+.+.|.+...++.|... +++
T Consensus 271 F~p~l~f~~~D~~~~~~~~---~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQ---FKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred HHHhcChhhcccccCchHH---HHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 3333332111 0111121 224445555432 24567888999999888887432 222
Q ss_pred ---HHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhc-CCcHHHHHHHHHHHHHhhCC
Q 003227 701 ---VHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSS-SGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 701 ---v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~-~~~~~~~~~a~~aL~~l~~~ 757 (837)
....++..|.-|+......+.++..+.+ ++++.|.. +....+=..|-..|..+..+
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 2335777788887755544455666666 44544433 32345555666666666664
No 202
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.81 E-value=0.62 Score=48.25 Aligned_cols=191 Identities=18% Similarity=0.103 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHc--CCHHHHHHHHhcCCHHHHHHHHHHHHhhccC---ccchH
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEE--GGINILAVLARSMNRLVAEEAAGGLWNLSVG---EEHKG 504 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~---~~~~~ 504 (837)
+...+..+.+.....|..|+..+.++.........+.+. ..+..+.+.++.+..+-+..|+.++.-++-. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 344556666667889999999998876532222222221 1266777777777666666777777666542 23344
Q ss_pred HHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc---C-CCchHHHHhcCcHHHHHH--HHh---------cCCCH
Q 003227 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA---D-DKCSMEVALAGGVHALVM--LAR---------SCKFE 569 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~---~-~~~~~~l~~~g~i~~L~~--ll~---------~~~~~ 569 (837)
.+.+. ..|.|...+.. .+....++..++.+|+-++. . ++...... ..+..+.. ..+ ..+++
T Consensus 125 ei~~~-~~~~L~~~l~d-~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 125 EIFEE-LKPVLKRILTD-SSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHhC-CccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44443 67788888875 44456666676666666554 1 11111111 11221111 111 12235
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhh
Q 003227 570 GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (837)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 627 (837)
.+...|+.+..-|...- +.....-.-...++.|..+|.+.+.+||.+|..+|+-|
T Consensus 201 ~l~~aAL~aW~lLlt~~---~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTL---PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 68888888888887642 22111111246789999999999999999998888765
No 203
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.79 E-value=2.2 Score=44.43 Aligned_cols=205 Identities=11% Similarity=0.008 Sum_probs=146.4
Q ss_pred HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCc--ccchh-hc-cchHHHHHHHcCCCCHHHHHHHHHH
Q 003227 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN--NSAVG-QE-AGALEALVQLTRSPHEGVRQEAAGA 623 (837)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~-~~-~~~i~~L~~lL~~~~~~~~~~a~~~ 623 (837)
.++...+.+..|+..|..-+ -+.+..++.+..++......... ....+ .. ..++..|+..- +++++-..+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHH
Confidence 45667788999999888876 78889999999999875321110 01111 12 23333333333 356677788889
Q ss_pred HHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-Cccchhhhhcc---CChHHHHHHhccCCH
Q 003227 624 LWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGRE---GGVAPLIALARSEAE 699 (837)
Q Consensus 624 L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~---~~i~~L~~lL~s~~~ 699 (837)
|+....++.....+.....+..+...+.. ++-++...|..++..+-. ++......... ..+..+-.+|.+++-
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~---~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY 223 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQL---PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY 223 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTS---SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcC---CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence 99999998888889999999999999887 999999999999888653 44433333332 345667788899999
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHH----cCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 700 DVHETAAGALWNLAFNPGNALRIVE----EGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 700 ~v~~~a~~~L~~l~~~~~~~~~i~~----~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
-++++++..|..+-.++.+...|.+ ..-+..++.+|++. ++.+|..|.....-+..+..
T Consensus 224 vtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 224 VTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS
T ss_pred EeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCC
Confidence 9999999999999999998877664 33477777888875 59999999999988876643
No 204
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.77 E-value=0.019 Score=60.42 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=81.7
Q ss_pred HHhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC
Q 003227 99 ASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (837)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~ 178 (837)
.+.|+++++|++++|... .+. .--++|++|++.+|.+++. +... -.++|++|+++ .|..+. .-.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls--~Cs~L~--------sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVC--HCPEIS--------GLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CCCCCCcEEEccCCCCccc--CCch--hhhhhhheEcc--Cccccc--------ccc
Confidence 344689999999998332 222 1223799999999987532 1111 13589999995 575543 123
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhh-CC-CCCCEeeccCCCCCCHHHHHHHHhcCCCcc
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALG-NV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~-~l-~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~ 256 (837)
++|+.|++.+. ... .+...-++|++|.+.++.......+. .+ ++|++|++++|..+.-. ..-..+|+
T Consensus 112 ~sLe~L~L~~n-~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP-----~~LP~SLk 180 (426)
T PRK15386 112 ESVRSLEIKGS-ATD-----SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILP-----EKLPESLQ 180 (426)
T ss_pred cccceEEeCCC-CCc-----ccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCc-----ccccccCc
Confidence 57888888653 222 12333357888888543222111111 23 58999999988654210 01235788
Q ss_pred EEEeccC
Q 003227 257 GLDVSRT 263 (837)
Q Consensus 257 ~L~l~~~ 263 (837)
.|+++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 8888764
No 205
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.76 E-value=0.29 Score=55.04 Aligned_cols=304 Identities=14% Similarity=0.099 Sum_probs=166.0
Q ss_pred hhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHH------cCCHHHHHHHHhcCCHHHHHHHHHH
Q 003227 419 GRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAE------EGGINILAVLARSMNRLVAEEAAGG 492 (837)
Q Consensus 419 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~------~g~i~~L~~lL~~~~~~~~~~a~~~ 492 (837)
.....+++.|+|.+|+..-+-+ ..-.....+|+.+....+.-+.+.- ...+..-+.++......-+..++..
T Consensus 385 kfa~~fv~~~gi~kll~vpr~s--~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~f 462 (1516)
T KOG1832|consen 385 KFAAMFVERRGILKLLAVPRVS--ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALF 462 (1516)
T ss_pred HHHHHHHHhhhhHHHhcCCCch--hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHH
Confidence 3455788999988887763321 1222344566666665444443332 2334455556655433333333222
Q ss_pred HHhhccCccchHHHHhhCCHHHHHHHHHhhC----------------CCCHHHHHHHHHHHHHhhc------CCCchHHH
Q 003227 493 LWNLSVGEEHKGAIADAGGVKALVDLIFKWS----------------SGGDGVLERAAGALANLAA------DDKCSMEV 550 (837)
Q Consensus 493 L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~----------------~~~~~~~~~a~~~L~~l~~------~~~~~~~l 550 (837)
+...-.....-..+-...++..|+.+++... +.+.+.-.+.+.+|+..-. -+..+..-
T Consensus 463 f~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~ 542 (1516)
T KOG1832|consen 463 FAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSR 542 (1516)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2211111122233444556777777775310 0112233455666654332 12333333
Q ss_pred HhcCcHHHHHHHHhcCCC-----HHHHHHHHHHHHHHhcCC----CCCCcccchhhccchHHHHHHHcCCC--------C
Q 003227 551 ALAGGVHALVMLARSCKF-----EGVQEQAARALANLAAHG----DSNSNNSAVGQEAGALEALVQLTRSP--------H 613 (837)
Q Consensus 551 ~~~g~i~~L~~ll~~~~~-----~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~~~~i~~L~~lL~~~--------~ 613 (837)
+..|.....+.-+..+.. .+..+..++-+..+...+ ...+...+.+.+.+++..++++...+ -
T Consensus 543 ~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR 622 (1516)
T KOG1832|consen 543 ISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPR 622 (1516)
T ss_pred cccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcc
Confidence 444444444443332211 111122333332222211 12344455566677888888876542 2
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHc--------CCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcccCc-cch-----
Q 003227 614 EGVRQEAAGALWNLSFDDRNREAIAAA--------GGVEALVVLAQSCSNA-SPGLQERAAGALWGLSVSE-ANC----- 678 (837)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~~~~l~~~--------g~i~~L~~ll~~~~~~-~~~v~~~A~~~L~~l~~~~-~~~----- 678 (837)
.++...|..+|+-+..-++.+..+... .|+..++......+.. +++++..|+.++.|+...+ +++
T Consensus 623 ~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~ 702 (1516)
T KOG1832|consen 623 HDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIV 702 (1516)
T ss_pred hHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhh
Confidence 466778888888888778777766542 3566666554432334 8999999999999987432 322
Q ss_pred ------------------------------hhhhccCChHHHHHHhccC-----CHHHHHHHHHHHHHHcCCcccHHHHH
Q 003227 679 ------------------------------IAIGREGGVAPLIALARSE-----AEDVHETAAGALWNLAFNPGNALRIV 723 (837)
Q Consensus 679 ------------------------------~~l~~~~~i~~L~~lL~s~-----~~~v~~~a~~~L~~l~~~~~~~~~i~ 723 (837)
..+...+||..|+++|+-. .+.++..|+.+|.-|+.++..++.+.
T Consensus 703 ~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIlt 782 (1516)
T KOG1832|consen 703 AVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILT 782 (1516)
T ss_pred hccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 1222345889999998643 35689999999999999998887765
Q ss_pred H
Q 003227 724 E 724 (837)
Q Consensus 724 ~ 724 (837)
+
T Consensus 783 K 783 (1516)
T KOG1832|consen 783 K 783 (1516)
T ss_pred h
Confidence 4
No 206
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.73 E-value=0.0064 Score=59.77 Aligned_cols=48 Identities=27% Similarity=0.551 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHcc-----CChHhHHHHHhhcHHHHHHhcCCCcccccCC
Q 003227 38 VDWTSLPDDTVIQLMSC-----LNYRDRASLSSTCRTWRALGASPCLWSSLDL 85 (837)
Q Consensus 38 ~~~~~LP~eil~~I~~~-----l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~l 85 (837)
+.|..||||+|..||.. ++++++-+++.|||.|+..++++.+|+...+
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 44789999999999985 5678899999999999999999999975444
No 207
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.65 E-value=0.22 Score=55.90 Aligned_cols=221 Identities=16% Similarity=0.020 Sum_probs=141.6
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH-hhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHH
Q 003227 456 SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLW-NLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (837)
Q Consensus 456 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (837)
+.....+...++.||...|+++...+.+..+..+..+|. .+....+- ....++++...+.+ .....-...++
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~--d~~~~en~E~L 563 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHN--DEKGLENFEAL 563 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhh--hHHHHHHHHHH
Confidence 335667788899999999999998888877777777777 33321110 11235555555531 11122234678
Q ss_pred HHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhc-cchHHHHHHHcCCC
Q 003227 535 GALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE-AGALEALVQLTRSP 612 (837)
Q Consensus 535 ~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~~~i~~L~~lL~~~ 612 (837)
.++.||+. ++..++.+.+.-+++.+-.++... ++..|+.++..+.||.+++ .-....+.+ ...++....++...
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~---~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSP---LLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhH---HHHHHHhhccccCchHHHHHHHhh
Confidence 89999998 456677787776666655555544 4889999999999999852 111111222 34455555556666
Q ss_pred CHHHHHHHHHHHHhhcCCh-hhHH-HHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-CccchhhhhccCChHH
Q 003227 613 HEGVRQEAAGALWNLSFDD-RNRE-AIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAP 689 (837)
Q Consensus 613 ~~~~~~~a~~~L~~Ls~~~-~~~~-~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~ 689 (837)
++....++++++..++... .++. ...-..+...+..++.+ ++++++...+....|+.. ..+....+.....++.
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~---~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~ 716 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD---EDDEIQHRGLVIILNLFEALFEIAEKIFETEVMEL 716 (748)
T ss_pred hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC---chhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence 7777888888888665553 3344 33335678888888887 999999999998888543 2334444444444433
Q ss_pred H
Q 003227 690 L 690 (837)
Q Consensus 690 L 690 (837)
+
T Consensus 717 l 717 (748)
T KOG4151|consen 717 L 717 (748)
T ss_pred H
Confidence 3
No 208
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.65 E-value=0.33 Score=45.86 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCC-
Q 003227 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG- 470 (837)
Q Consensus 392 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~- 470 (837)
++.+|.++..+++.|+..-+. ++ ...++.+...|+++++.+|..|+.+|..|...+-. +..|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----------~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~ 63 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----------LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQ 63 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----------HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhh
Confidence 478899999999988854332 11 23577899999999999999999999998874322 2222
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q 003227 471 -INILAVLARSMNRLVAEEAAGGLWNLSVG 499 (837)
Q Consensus 471 -i~~L~~lL~~~~~~~~~~a~~~L~~l~~~ 499 (837)
+..++.++.+++++++..|...+..+...
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 37788888999999999999999999865
No 209
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.62 E-value=0.079 Score=50.08 Aligned_cols=126 Identities=17% Similarity=0.093 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHhhcCChhhHHHHHHc----------------CCHHHHHHHHhh---cCCCCHHHHHHHHHHHHhc
Q 003227 611 SPHEGVRQEAAGALWNLSFDDRNREAIAAA----------------GGVEALVVLAQS---CSNASPGLQERAAGALWGL 671 (837)
Q Consensus 611 ~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~----------------g~i~~L~~ll~~---~~~~~~~v~~~A~~~L~~l 671 (837)
+++......++..|.|++..+.....+.+. ..+..|+.++.. .......-....+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 344456667889999999987776655442 245666666643 1123345566789999999
Q ss_pred ccCccchhhhhcc--CC--hHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHc---CCHHHHHHHHh
Q 003227 672 SVSEANCIAIGRE--GG--VAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEE---GGVPALVHLCS 736 (837)
Q Consensus 672 ~~~~~~~~~l~~~--~~--i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~---~~i~~L~~ll~ 736 (837)
+..++.|+.+.+. +. +..|+.++.+.+..-|..++.++.|+|.+......+... +.+|.|+--+.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999998874 33 667777888787777778999999999988888777764 44666665554
No 210
>PRK14707 hypothetical protein; Provisional
Probab=95.60 E-value=9.8 Score=48.14 Aligned_cols=394 Identities=14% Similarity=0.062 Sum_probs=200.9
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHHHHHhhhcCcCchhhHHHhhhHHHHHHhh-hcCCHHHHHHHHHHhhccccccC
Q 003227 333 FLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLM-QSTQEDVQERAATGLATFVVIND 411 (837)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~~l~~l~s~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~ 411 (837)
..+|.+...|..-..++..++.. .+ .+..-+...++...++.| +=+|..+...|+..|..=...+
T Consensus 298 lSKwpd~~vc~~Aa~~la~rl~~------------d~-~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d- 363 (2710)
T PRK14707 298 LSKWADLPVCAEAAIALAERLAD------------DP-ELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVAD- 363 (2710)
T ss_pred hhcCCCchHHHHHHHHHHHHHhc------------cH-hhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccC-
Confidence 45667766676666666665332 11 111113444555556666 4466666667766665422222
Q ss_pred cccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHH-hccChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHH
Q 003227 412 ENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIAN-LSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEE 488 (837)
Q Consensus 412 ~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~ 488 (837)
++.++. .+..++..+++.|.. ++..+-..|+..|.. +..+++.++.+-.. +|..++..|.. ++..+-..
T Consensus 364 ------~~l~~~-l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q-~van~lnalsKWPd~~~C~~ 435 (2710)
T PRK14707 364 ------PELRKD-LEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ-GVSNALNALAKWPDLPICGQ 435 (2710)
T ss_pred ------Hhhhcc-cchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh-hHHHHHHHhhcCCcchhHHH
Confidence 222222 234456667777766 566666666677755 66688887776544 56666666654 66555555
Q ss_pred HHHHHH-hhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCC
Q 003227 489 AAGGLW-NLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK 567 (837)
Q Consensus 489 a~~~L~-~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~ 567 (837)
++..|. .++.+.+.+..+--.+ |...++.+..+. +++.-...+-.....|+.+.+.++.+--.++...|-.+-+-++
T Consensus 436 aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd 513 (2710)
T PRK14707 436 AVSALAGRLAHDTELCKALDPIN-VTQALDALSKWP-DTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPD 513 (2710)
T ss_pred HHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCC
Confidence 555555 4555666666554443 555556665322 2333334444445566667776666644444444444444444
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHc-CCCCHHHHHHHHHHHHhhcCCh-hhHHHHHHcCCHHH
Q 003227 568 FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT-RSPHEGVRQEAAGALWNLSFDD-RNREAIAAAGGVEA 645 (837)
Q Consensus 568 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~~Ls~~~-~~~~~l~~~g~i~~ 645 (837)
.......+.+.-..+.. .......+.. .-+..+++-| +.++...-+.++..|..+.... ..+..+ +...|..
T Consensus 514 ~~~c~~A~~~lA~rl~~----~~~l~~~~~~-~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L-~aq~Vs~ 587 (2710)
T PRK14707 514 TPICAEAASALAERVVD----ELQLRKAFDA-HQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDL-HRQGVVI 587 (2710)
T ss_pred cHHHHHHHHHHHHHhcc----chhhhhhhhh-HHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhh-hhhHHHH
Confidence 33333344444444442 1111222222 2233334444 3344444455555555543333 333333 4456777
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHh-ccCCHHHHHHHHHHH-HHHcCCcccHHHHH
Q 003227 646 LVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA-RSEAEDVHETAAGAL-WNLAFNPGNALRIV 723 (837)
Q Consensus 646 L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL-~s~~~~v~~~a~~~L-~~l~~~~~~~~~i~ 723 (837)
++..|.. .+.....+..+.++-..+...+..+..+.. ..+..+++.+ +-++.+..+.++..| ..+..++..+.. +
T Consensus 588 llNaLSK-WP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~-q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~-f 664 (2710)
T PRK14707 588 VLNALSK-WPDTAVCAEAVNALAERLVDEPDLRKELDP-VDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKT-F 664 (2710)
T ss_pred HHHhhcc-CCCcHHHHHHHHHHHHHhccChhhhhhccH-HHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhh-c
Confidence 7777765 345555555555555555555544444332 2344555555 333334444444443 344444333322 2
Q ss_pred HcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 724 EEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 724 ~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
..-.+.-+++-++.=....+...|+..|+......+
T Consensus 665 naQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~~ 700 (2710)
T PRK14707 665 NSLDVANALNALSKWPDTPVCAAAAGGMAERLAADP 700 (2710)
T ss_pred chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcCh
Confidence 233466666666553335567777777765544444
No 211
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.59 E-value=0.97 Score=48.17 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=123.0
Q ss_pred HHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCC----------------------------------HHHHHHHHH
Q 003227 447 EAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMN----------------------------------RLVAEEAAG 491 (837)
Q Consensus 447 ~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~----------------------------------~~~~~~a~~ 491 (837)
.|+..|-.+.. .++.-..+.+.+|+..+++.++.+- ..+.+..+.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 35566666655 4566677788888888877764311 012222334
Q ss_pred HHHhhcc-Cc---cchHHHHh-hCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHHh-
Q 003227 492 GLWNLSV-GE---EHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLAR- 564 (837)
Q Consensus 492 ~L~~l~~-~~---~~~~~l~~-~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~- 564 (837)
.+..+.. +. +.-+.+.+ ......|..++++...-.+.+...|+.++..+..++ ..-..+.+.|.++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 4444444 32 22233444 334556666776545556778889999999998854 45577888899999999887
Q ss_pred cC--CCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCH-------HHHHHHHHHHHhhcCC-hhhH
Q 003227 565 SC--KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE-------GVRQEAAGALWNLSFD-DRNR 634 (837)
Q Consensus 565 ~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-------~~~~~a~~~L~~Ls~~-~~~~ 634 (837)
.. ...++....-.++..+|- +....+.+.+.+.++.+++.+.+++- +.-......+-.|.+| +.-|
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicL----N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk 238 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICL----NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLK 238 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhc----CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHH
Confidence 32 346777777888888998 67788888899999999999877521 2223334455667777 4446
Q ss_pred HHHHH
Q 003227 635 EAIAA 639 (837)
Q Consensus 635 ~~l~~ 639 (837)
..+++
T Consensus 239 ~~i~~ 243 (379)
T PF06025_consen 239 PDIID 243 (379)
T ss_pred HHHHH
Confidence 55544
No 212
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.05 Score=56.68 Aligned_cols=227 Identities=19% Similarity=0.096 Sum_probs=125.7
Q ss_pred HHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHH-HHcCCHH
Q 003227 394 DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAV-AEEGGIN 472 (837)
Q Consensus 394 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i-~~~g~i~ 472 (837)
..+..++.++.++......++..+-.....+...|+- ++.+.-++..|.+++.-+..++..+... .-..+..
T Consensus 364 Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~ 436 (728)
T KOG4535|consen 364 TLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAAN 436 (728)
T ss_pred CchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHH
Confidence 3456666777776655555443322333333333322 2233344555666666655566544332 2333456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcc-----Ccc---chHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc--
Q 003227 473 ILAVLARSMNRLVAEEAAGGLWNLSV-----GEE---HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-- 542 (837)
Q Consensus 473 ~L~~lL~~~~~~~~~~a~~~L~~l~~-----~~~---~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~-- 542 (837)
.++..+.+..-..++.+.++++||+. .|. ....+... -+..+...-......+..++.++.++|+|+..
T Consensus 437 ~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 437 AILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 66667777778899999999999985 122 22222221 12222222211134567899999999999985
Q ss_pred CC--CchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC-CCHHHHHH
Q 003227 543 DD--KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS-PHEGVRQE 619 (837)
Q Consensus 543 ~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~ 619 (837)
++ +.--.....|.+..+..-.-.+....|+.+||.++.|+-.+..- ..+..--...+.+.|..++.+ .+-.+|..
T Consensus 516 q~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~--~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 516 QPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL--PLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred HHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc--cccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 11 11111122233333333222223478999999999999885211 011111223456777777655 47789999
Q ss_pred HHHHHHhhcCC
Q 003227 620 AAGALWNLSFD 630 (837)
Q Consensus 620 a~~~L~~Ls~~ 630 (837)
|+++|..-...
T Consensus 594 AA~aL~vp~~r 604 (728)
T KOG4535|consen 594 AAAALSVPGKR 604 (728)
T ss_pred hhhhhcCCCCc
Confidence 99999766553
No 213
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.37 Score=51.59 Aligned_cols=117 Identities=21% Similarity=0.120 Sum_probs=75.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHH-hccCCHHHHHHHHHHHHHHcCCcccHHHHH
Q 003227 645 ALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIAL-ARSEAEDVHETAAGALWNLAFNPGNALRIV 723 (837)
Q Consensus 645 ~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~l-L~s~~~~v~~~a~~~L~~l~~~~~~~~~i~ 723 (837)
.+-+++.+ .++-+|...+.+++.--... ...|.+..++.. ..+++++|+++|..+|.-.|....
T Consensus 520 ~I~ell~d---~ds~lRy~G~fs~alAy~GT------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYD---KDSILRYNGVFSLALAYVGT------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcC---chHHhhhccHHHHHHHHhcC------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 33445554 66677776665554311111 123456666665 567788888888888887775432
Q ss_pred HcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcch--hhhccCccCcccccch
Q 003227 724 EEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEF--ALIGTSTESTSKCVSL 778 (837)
Q Consensus 724 ~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~--~~i~~~~~~~~~~~~~ 778 (837)
..++..+++|..++++.||...+.||+-.+.+..+.+ .++.++..++...|+.
T Consensus 585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ 639 (926)
T COG5116 585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQ 639 (926)
T ss_pred --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHH
Confidence 4566777778777778888888888887777766554 3777777777766655
No 214
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.56 E-value=0.34 Score=47.34 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHHHHhhccC-ccchHHHHhh-CCHHHHHH-HHHhhC---CC--CH---HHHHHHHHHHHHhhcCCCchHH
Q 003227 481 MNRLVAEEAAGGLWNLSVG-EEHKGAIADA-GGVKALVD-LIFKWS---SG--GD---GVLERAAGALANLAADDKCSME 549 (837)
Q Consensus 481 ~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~-g~i~~L~~-lL~~~~---~~--~~---~~~~~a~~~L~~l~~~~~~~~~ 549 (837)
.+++.++.|+.-|+.--.. ++....+-.. |.+..|++ ++.-+. .. +. .-..+|+..|..++.+++.+..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 4667777777666655432 3333333333 44444443 332111 11 11 3345778888899999999999
Q ss_pred HHhcCcHHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHH
Q 003227 550 VALAGGVHALVMLARSCK----FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALW 625 (837)
Q Consensus 550 l~~~g~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 625 (837)
+.++...--|..++...+ .+.++..+.++++.+...+ .++....+.+.+++|..++.+..+++-.+.-|..++.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d--~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlq 164 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTD--DPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQ 164 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT----HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCC--cHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999998877788876442 2567788999999998754 4455667778999999999999988888888988888
Q ss_pred hhcCChhhHHHHHH--------cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHH------HH
Q 003227 626 NLSFDDRNREAIAA--------AGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAP------LI 691 (837)
Q Consensus 626 ~Ls~~~~~~~~l~~--------~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~------L~ 691 (837)
.+-.++..-.++.+ ..++..++..+.. .+++.+-+...++-..++.++..+.++... +|. +.
T Consensus 165 KIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~--~pS~RLLKhIIrCYlRLsdnprar~aL~~~--LP~~Lrd~~f~ 240 (262)
T PF04078_consen 165 KILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK--QPSPRLLKHIIRCYLRLSDNPRAREALRQC--LPDQLRDGTFS 240 (262)
T ss_dssp HHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH--S--HHHHHHHHHHHHHHTTSTTHHHHHHHH--S-GGGTSSTTT
T ss_pred HHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc--CCChhHHHHHHHHHHHHccCHHHHHHHHHh--CcHHHhcHHHH
Confidence 77666554433322 1234444444433 478999999999999999999888777652 222 11
Q ss_pred HHhccCCHHHHHHHHHHHHHHc
Q 003227 692 ALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 692 ~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
..+ .+|+.++..-...+.|+.
T Consensus 241 ~~l-~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 241 NIL-KDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp TGG-CS-HHHHHHHHHHHHHTT
T ss_pred HHH-hcCHHHHHHHHHHHHHhc
Confidence 112 246777777777776653
No 215
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.54 E-value=0.006 Score=60.23 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=52.3
Q ss_pred CCCCCCCC----HHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccccCCCCCcCCHHHHHHHHHh
Q 003227 37 VVDWTSLP----DDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASR 101 (837)
Q Consensus 37 ~~~~~~LP----~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~l~~~~~~~~~l~~l~~~ 101 (837)
.+.++.|| +++-..||+||+..+++.+-.|||.|+.+..++-+|+++-..... +++....+.++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr-~dslWrgl~e~ 139 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVR-TDSLWRGLSER 139 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcc-hHHHHhhhhhc
Confidence 56678899 999999999999999999999999999999999999887655433 34555555443
No 216
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.52 E-value=0.4 Score=45.32 Aligned_cols=93 Identities=19% Similarity=0.099 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHH
Q 003227 568 FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALV 647 (837)
Q Consensus 568 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~ 647 (837)
++.++..++.+++.++... + .+ -+..++.+...|+++++.+|+.|+.+|..|...+-.+. +...+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---~----~~-ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---P----NL-VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---c----HH-HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHH
Confidence 3788999999999998852 2 11 14567889999999999999999999999876532211 111236667
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcccC
Q 003227 648 VLAQSCSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 648 ~ll~~~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
.++.+ ++++++..|...+..+...
T Consensus 70 ~~l~D---~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVD---ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcC---CCHHHHHHHHHHHHHHHHh
Confidence 77776 9999999999999998754
No 217
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.41 E-value=0.047 Score=45.12 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=49.1
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHH--HcCCHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 003227 685 GGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIV--EEGGVPALVHLCSSSGSKMARFMAALALAYM 754 (837)
Q Consensus 685 ~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~--~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l 754 (837)
..+++++..+.+++.+||.+|+++|+|++.... ..++ =....+.|.+++.+.+ +.||..| ..|-.+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d-~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPD-ENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCc-hhHHHHH-HHHHHH
Confidence 368889999999999999999999999985432 2333 2456778888888775 7777766 445444
No 218
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.38 E-value=0.27 Score=48.38 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhc-cCccchHHHHhhCCHHHHHHHH
Q 003227 443 GLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLS-VGEEHKGAIADAGGVKALVDLI 519 (837)
Q Consensus 443 ~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~lL 519 (837)
.....|+.+|..++. ++..+..+.+..+++.++.+|.. ..+.++..++.+|..+. .++.+.+.+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345568899999887 89999999999999999999954 67889988888887766 5779999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhc
Q 003227 520 FKWSSGGDGVLERAAGALANLAA 542 (837)
Q Consensus 520 ~~~~~~~~~~~~~a~~~L~~l~~ 542 (837)
+. .+.+.+++-.++..|.-...
T Consensus 186 k~-~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KS-KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cc-ccccHHHhHHHHHHHHHHHc
Confidence 87 55667777777766655443
No 219
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.41 Score=57.43 Aligned_cols=314 Identities=18% Similarity=0.091 Sum_probs=151.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc--Ch
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NA 459 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~ 459 (837)
..+...+.++++..|..++--|..+.........+ ............++|.+.|+-+|..|.+-|+-+-. +.
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v------~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~ 894 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEV------VLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS 894 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh------hhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc
Confidence 34444556677777655443332222221111111 11112223567788888888889888887765433 33
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCH-------HHHHHHHHHHH------hhccCccchHHHHhhCCHHH---HHHHHHhhC
Q 003227 460 KVAKAVAEEGGINILAVLARSMNR-------LVAEEAAGGLW------NLSVGEEHKGAIADAGGVKA---LVDLIFKWS 523 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~-------~~~~~a~~~L~------~l~~~~~~~~~l~~~g~i~~---L~~lL~~~~ 523 (837)
+.++.+ +..|++-|-.+.. +..-..-++|+ +|+...+.+..--+.|--+. ++++-. +
T Consensus 895 ~~k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAn--h 967 (1702)
T KOG0915|consen 895 SLKKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLAN--H 967 (1702)
T ss_pred hhHHHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhh--h
Confidence 444443 3445544422110 00001111111 11111111111122222111 222222 2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH
Q 003227 524 SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603 (837)
Q Consensus 524 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~ 603 (837)
.....-+.-|+.-++.++....-+-+-.-...||.|.++=-+++ ..+|.+...+...|.... . .-.--.-.++++
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~---k-~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDS---K-KVVDEYLNEILD 1042 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccCh---H-HHHHHHHHHHHH
Confidence 22223344455555555543211111111235677777666664 888777776666666531 1 001111235677
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHH-cCCHHHHHHHHhhcCCCCHHHHHHH---HHHHHhccc---Cc-
Q 003227 604 ALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAA-AGGVEALVVLAQSCSNASPGLQERA---AGALWGLSV---SE- 675 (837)
Q Consensus 604 ~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~v~~~A---~~~L~~l~~---~~- 675 (837)
.|+.-|.+....+|+++|.||..|-...+.-+..-. ...-..+.+.+.+ -.+.+|++| +.+|..++. +.
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD---IKEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD---IKESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 777778888999999999999998776444222111 0223444555555 566777765 445555542 11
Q ss_pred --cchhhhhccCChHHHHHH-hccCCHHHHHHHHHHHHHHcCCcc
Q 003227 676 --ANCIAIGREGGVAPLIAL-ARSEAEDVHETAAGALWNLAFNPG 717 (837)
Q Consensus 676 --~~~~~l~~~~~i~~L~~l-L~s~~~~v~~~a~~~L~~l~~~~~ 717 (837)
.-.+++.+ ..+|.|++- +-+.-++++..++..+..|+.+..
T Consensus 1120 ~~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1120 NGAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred CcccHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 11111111 133433311 125679999999999999987543
No 220
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.26 E-value=1.9 Score=45.99 Aligned_cols=276 Identities=17% Similarity=0.123 Sum_probs=148.1
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc-CCH-HHHHHHHHHHHhhccCccchHHH
Q 003227 430 IRLLLDLAKS-WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNR-LVAEEAAGGLWNLSVGEEHKGAI 506 (837)
Q Consensus 430 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~-~~~-~~~~~a~~~L~~l~~~~~~~~~l 506 (837)
++.++.-+++ ....+|+.++--|..-+.+++.+..+...|.++.+++.+.+ ++. ...-.++.+++-++.+...-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 4455655653 45678888988888888899999999999999999999954 333 44444455555666655555555
Q ss_pred HhhCCHHHHHHHHH--hhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhc--------CCCHHHHHHHH
Q 003227 507 ADAGGVKALVDLIF--KWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS--------CKFEGVQEQAA 576 (837)
Q Consensus 507 ~~~g~i~~L~~lL~--~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~--------~~~~~~~~~a~ 576 (837)
.+.+....++.++. .......+....-.. +++ .. ....+..+...+.. .....-+..|.
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~---~ls-------k~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lal 171 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKK---NLS-------KV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTLAL 171 (361)
T ss_pred hchhHHHHHHHHhccccccccccchhhhhhh---hhh-------HH-HHHHHHHHHHHHhccccccccCCcccccccHHH
Confidence 55656666677775 100000000000000 000 00 00111111111100 01122234444
Q ss_pred HHHHHHh-----------cCCCCCCcccchhhccchHHHHHHHcCC----C------------CHHHHHHHHHHHHhhcC
Q 003227 577 RALANLA-----------AHGDSNSNNSAVGQEAGALEALVQLTRS----P------------HEGVRQEAAGALWNLSF 629 (837)
Q Consensus 577 ~~L~~l~-----------~~~~~~~~~~~~~~~~~~i~~L~~lL~~----~------------~~~~~~~a~~~L~~Ls~ 629 (837)
.+|..++ ......+..++.+.+.|+++.++..+.. . +......+..+|-+.+.
T Consensus 172 l~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~ 251 (361)
T PF07814_consen 172 LALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTF 251 (361)
T ss_pred HHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence 4444442 1111122345666777889999888751 1 11234457778888776
Q ss_pred C-hhhHHHHHHc--CCH-HHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHH---HHHh----c--
Q 003227 630 D-DRNREAIAAA--GGV-EALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPL---IALA----R-- 695 (837)
Q Consensus 630 ~-~~~~~~l~~~--g~i-~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L---~~lL----~-- 695 (837)
. .+++..+... +.+ ..+..++..+..........+++.+.|++-+ +..+..+...+....+ ...+ .
T Consensus 252 ~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~ 331 (361)
T PF07814_consen 252 LSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLP 331 (361)
T ss_pred cCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccc
Confidence 5 5667666654 222 3333333331123444567889999999964 5665555554322221 1111 1
Q ss_pred -----cCCHHHHHHHHHHHHHHcCCc
Q 003227 696 -----SEAEDVHETAAGALWNLAFNP 716 (837)
Q Consensus 696 -----s~~~~v~~~a~~~L~~l~~~~ 716 (837)
...-+...-++++|.||+.+.
T Consensus 332 ~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 332 NYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccccccchHHHHHHHhHHHheeeC
Confidence 123467778888888888743
No 221
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.21 E-value=1.7 Score=45.34 Aligned_cols=215 Identities=10% Similarity=0.017 Sum_probs=148.8
Q ss_pred HHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHH
Q 003227 375 FWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIA 453 (837)
Q Consensus 375 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~ 453 (837)
+++.+-+..|+..|..-+-+.+..++.+..++......... .+ ..+.+.. ..-+.+..+++. +++++-..+-..|+
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~-~p-~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRS-PP-TVDYLER-HRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB---H-HHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCC-Cc-hHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence 44555567888888888888988888888887765543311 01 1122221 112223333333 57888999999999
Q ss_pred HhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc-cCccchHHHHhhCC---HHHHHHHHHhhCCCCHHH
Q 003227 454 NLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKGAIADAGG---VKALVDLIFKWSSGGDGV 529 (837)
Q Consensus 454 ~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~---i~~L~~lL~~~~~~~~~~ 529 (837)
.+...+...+.+.....+..+.+.+..++-++...|..++..+- .++.....+...+. +.....+| .+++--+
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll---~s~NYvt 225 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL---ESSNYVT 225 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC---T-SSHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc---cCCCeEe
Confidence 99999998999999888999999999999999999999999865 45555555554432 34455666 4688999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHh----cCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchh
Q 003227 530 LERAAGALANLAADDKCSMEVAL----AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (837)
Q Consensus 530 ~~~a~~~L~~l~~~~~~~~~l~~----~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (837)
+++++..|+.+-.+..+...+.. ..-+..++.+|++.+ ..+|..|-.+..-....+..+++...++
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVANp~K~~~I~~iL 295 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVANPNKPPPIVDIL 295 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence 99999999999998887654432 355788888999876 8899999999999988655444444333
No 222
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.18 E-value=0.032 Score=38.37 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=14.0
Q ss_pred CccEEEecCCCCCCh-HH-hhCCCCCCEeeccCC
Q 003227 206 NLTDIGFLDCLNVDE-VA-LGNVLSVRFLSVAGT 237 (837)
Q Consensus 206 ~L~~L~l~~~~~~~~-~~-l~~l~~L~~L~ls~~ 237 (837)
+|++|++++| .+++ .. +..|++|+.|++++|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4555555555 3333 22 445555555555554
No 223
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.15 E-value=0.092 Score=43.42 Aligned_cols=65 Identities=23% Similarity=0.200 Sum_probs=49.0
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHH--cCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAA--AGGVEALVVLAQSCSNASPGLQERAAGALW 669 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~--~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~ 669 (837)
..++++++..+.+++..||..|+++|.|++.... ..+.. ...+..|.++..+ .++.||..| ..|-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D---~d~~Vr~~a-~~Ld 92 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSAD---PDENVRSAA-ELLD 92 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcC---CchhHHHHH-HHHH
Confidence 4678999999999999999999999999987533 23332 3457777777776 888888766 4443
No 224
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.14 E-value=0.0039 Score=63.37 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=42.8
Q ss_pred HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 221 VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 221 ~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
..|+.+++|+.|+|++| .++... ...+++..++++|.|..|.+..-.- .+..++..|++|+|.++. ||-..
T Consensus 268 ~cf~~L~~L~~lnlsnN-~i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~-it~~~ 338 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNN-KITRIE-DGAFEGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQ-ITTVA 338 (498)
T ss_pred HHHhhcccceEeccCCC-ccchhh-hhhhcchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCe-eEEEe
Confidence 45678888888888876 343322 1223556667777777775522111 223356777888887766 55544
No 225
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.07 E-value=0.6 Score=52.69 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=84.6
Q ss_pred HHHHHcCCHHHHHHHHhhc-----CCCCHHHHHHHHHHHHhcccCccchhhhhcc--------CChHHHHHHhc---c-C
Q 003227 635 EAIAAAGGVEALVVLAQSC-----SNASPGLQERAAGALWGLSVSEANCIAIGRE--------GGVAPLIALAR---S-E 697 (837)
Q Consensus 635 ~~l~~~g~i~~L~~ll~~~-----~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~--------~~i~~L~~lL~---s-~ 697 (837)
+.+...+++..++++.... .++..++...|+.+|.-+..-|..+.++... .|+..+++.-. + .
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 3444556777777766531 1133556677888888777778887777652 25555554431 1 3
Q ss_pred CHHHHHHHHHHHHHHcCCc-ccHH-----------------------------------HHHHcCCHHHHHHHHhcC---
Q 003227 698 AEDVHETAAGALWNLAFNP-GNAL-----------------------------------RIVEEGGVPALVHLCSSS--- 738 (837)
Q Consensus 698 ~~~v~~~a~~~L~~l~~~~-~~~~-----------------------------------~i~~~~~i~~L~~ll~~~--- 738 (837)
+++++..|+.++.|+...| .++. .+....||..|+.+++..
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 7999999999999987533 3321 234578999999999874
Q ss_pred -CcHHHHHHHHHHHHHhhCCCC
Q 003227 739 -GSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 739 -~~~~~~~~a~~aL~~l~~~~~ 759 (837)
..+.+|..|+.+|..|+....
T Consensus 755 t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCcH
Confidence 235689999999999987754
No 226
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.07 E-value=1.4 Score=45.60 Aligned_cols=192 Identities=20% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh--ccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC---
Q 003227 556 VHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ--EAGALEALVQLTRSPHEGVRQEAAGALWNLSFD--- 630 (837)
Q Consensus 556 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--- 630 (837)
+...+..+.+.. ...+..++..+.++.... .....+. ....++.+.+.++.+..+-+..|+.++.-++..
T Consensus 45 L~~~Id~l~eK~-~~~Re~aL~~l~~~l~~~----~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 45 LKEAIDLLTEKS-SSTREAALEALIRALSSR----YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 334444555554 778888888888887531 1112221 234567777888777665566677777766655
Q ss_pred hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc---C-ccchhhhhccCChHHHHH--Hhcc--------
Q 003227 631 DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV---S-EANCIAIGREGGVAPLIA--LARS-------- 696 (837)
Q Consensus 631 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~---~-~~~~~~l~~~~~i~~L~~--lL~s-------- 696 (837)
......+.+. ..+.|.+.+.+ .+.+..+|..++.+|+-++. . ++.-....+ .++.+.. ..++
T Consensus 120 g~~~~ei~~~-~~~~L~~~l~d-~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 120 GEDSEEIFEE-LKPVLKRILTD-SSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred CccHHHHHHH-HHHHHHHHHhC-CccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCccccc
Confidence 1234444443 67888888887 34556777777767666553 1 111110001 1221111 1111
Q ss_pred --CCHHHHHHHHHHHHHHcCCccc-HHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 697 --EAEDVHETAAGALWNLAFNPGN-ALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 697 --~~~~v~~~a~~~L~~l~~~~~~-~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
+++.+..+|+.+..-|...-+. ...-.-...++.|..+|.+++ ..||..|..+|+-+.+.
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d-~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDD-VDVRIAAGEAIALLYEL 258 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHH
Confidence 2356888888877777653222 111122356999999999875 88999999999988553
No 227
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.04 E-value=0.055 Score=45.99 Aligned_cols=68 Identities=18% Similarity=0.096 Sum_probs=57.8
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 003227 430 IRLLLDLA-KSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497 (837)
Q Consensus 430 i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~ 497 (837)
+..|+++| .+.|+.+...|+.=|+.++. .|..|..+-+.|+-..+.+++.+++++|+..|+.++..+.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45788888 44688888999999999998 7888888888998999999999999999999999988765
No 228
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.99 E-value=0.096 Score=49.50 Aligned_cols=104 Identities=17% Similarity=0.031 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhC----------------CHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhh
Q 003227 481 MNRLVAEEAAGGLWNLSVGEEHKGAIADAG----------------GVKALVDLIFK---WSSGGDGVLERAAGALANLA 541 (837)
Q Consensus 481 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g----------------~i~~L~~lL~~---~~~~~~~~~~~a~~~L~~l~ 541 (837)
+.......++..|.|++..+..+..+.+.+ .+..|++.+.. .......-..+.+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 344566788889999999887776554332 35566666643 11233456678899999999
Q ss_pred cCCCchHHHHhc--Cc--HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 542 ADDKCSMEVALA--GG--VHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 542 ~~~~~~~~l~~~--g~--i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
..++.|..+.+. +. +..|+.+..+. +..-+..++++|.|+|..
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhcc
Confidence 999999999876 34 78888888887 477788999999999995
No 229
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.95 E-value=0.98 Score=48.44 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=111.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCC----HHHHHHHHHHHHhhccCccchHHH
Q 003227 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMN----RLVAEEAAGGLWNLSVGEEHKGAI 506 (837)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~l 506 (837)
..+++.+.+++...|..|+..|..++.++.....+....|+..|.+++.+++ .++....+.++..+....-..-..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 4788899999999999999999999999999999999999999999998864 456666666666655432111111
Q ss_pred HhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-chHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 507 ~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
....++.....+.. ....+..+...|+..|-++..... ....+.+.--+..|+..++..+ ..++..|...+..+...
T Consensus 166 ~~~~fV~~~a~~V~-~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 166 VSNDFVVSMASYVN-AKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFRK 243 (713)
T ss_pred cccHHHHHHHHHHh-hhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHhh
Confidence 22223444444442 244566678889999999988665 4555666677899999999876 78888877777777654
No 230
>PLN03150 hypothetical protein; Provisional
Probab=94.94 E-value=0.032 Score=64.25 Aligned_cols=15 Identities=7% Similarity=0.392 Sum_probs=7.2
Q ss_pred hhCCCCCCEeeccCC
Q 003227 223 LGNVLSVRFLSVAGT 237 (837)
Q Consensus 223 l~~l~~L~~L~ls~~ 237 (837)
+..+++|+.|+|++|
T Consensus 438 i~~L~~L~~L~Ls~N 452 (623)
T PLN03150 438 ISKLRHLQSINLSGN 452 (623)
T ss_pred HhCCCCCCEEECCCC
Confidence 444445555555444
No 231
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.86 E-value=0.00094 Score=59.41 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=5.5
Q ss_pred CCccEEEecCC
Q 003227 205 PNLTDIGFLDC 215 (837)
Q Consensus 205 ~~L~~L~l~~~ 215 (837)
|.|+.||+.++
T Consensus 102 p~levldltyn 112 (264)
T KOG0617|consen 102 PALEVLDLTYN 112 (264)
T ss_pred chhhhhhcccc
Confidence 44555555544
No 232
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.84 E-value=1.2 Score=46.24 Aligned_cols=169 Identities=19% Similarity=0.162 Sum_probs=104.4
Q ss_pred HHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc--ChH
Q 003227 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAK 460 (837)
Q Consensus 383 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~ 460 (837)
.++..+++.++.+|..|..+|+-.+.-+.+. ....++.+...++.+++.++..|+.++..+.. ..+
T Consensus 31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~------------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 31 LILPAVQSSDPAVRELALKCLGLCCLLDKEL------------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhChHH------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 4456778899999999999999877544422 11235677888877899999999999998764 222
Q ss_pred HHHHH-------HHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCC-CCHHHHHH
Q 003227 461 VAKAV-------AEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS-GGDGVLER 532 (837)
Q Consensus 461 ~~~~i-------~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~-~~~~~~~~ 532 (837)
.-... .....++.+.+.+.+.+++++..|+..++.|.-...... ....+..|+-+.-++.. ++..++..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 21111 122336677788888899999999999999875432221 12233344433332222 23444444
Q ss_pred HHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcC
Q 003227 533 AAGALANLAADDKCSMEVALAGGVHALVMLARSC 566 (837)
Q Consensus 533 a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~ 566 (837)
-...+-..+......+..+....++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 4444445555444334555556667666666543
No 233
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.76 E-value=0.062 Score=45.66 Aligned_cols=70 Identities=21% Similarity=0.218 Sum_probs=59.0
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhh
Q 003227 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (837)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 627 (837)
.+..|+++|..++++.+...||.=|..++.. .|..+..+.+.|+=..++.++.+++++|+..|+.++..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~---~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRH---YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHH---ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5788999997666788888999999999987 677788888889999999999999999999999988754
No 234
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.72 E-value=3.1 Score=44.04 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=100.2
Q ss_pred HHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC-------ChhHHHHHHHHHHHh
Q 003227 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-------REGLQSEAAKAIANL 455 (837)
Q Consensus 383 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~l 455 (837)
.+..+++..+++-|..|.....+++.+++-+ ..++..+.++-+.+.+-++|.+. +.-.+..++.+|.-+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~----a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF 90 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIV----ALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACF 90 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchh----hhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4566667777777788888888888766644 45566788888888888888752 233466788888888
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhc-CCH------HHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHh
Q 003227 456 SVNAKVAKAVAEEGGINILAVLARS-MNR------LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK 521 (837)
Q Consensus 456 ~~~~~~~~~i~~~g~i~~L~~lL~~-~~~------~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~ 521 (837)
+.+++....=--...||.|+.++.. .++ .+.+.+..+|..++..+.....++..|+++.+.++-.-
T Consensus 91 C~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 91 CRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 8888744222222458999999864 222 27788999999999999999999999999999977653
No 235
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.62 E-value=3.2 Score=47.55 Aligned_cols=227 Identities=16% Similarity=0.050 Sum_probs=144.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH
Q 003227 524 SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603 (837)
Q Consensus 524 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~ 603 (837)
...+.+.-.+.+++...+...-....+.. -.+...+..+.-...+.++..|+++++.-+.. ..... ...++++
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~--~~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLS--LQPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccc--cchHHHH
Confidence 45566666777777766543211111111 12333444444334466777777777666531 11111 1457888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhc
Q 003227 604 ALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR 683 (837)
Q Consensus 604 ~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~ 683 (837)
.|.++....+.++.-....+|+..+..++......++...|..+.+... .+++|.+...+..++-.++....+..-+.
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k-~s~DP~V~~~~qd~f~el~q~~~~~g~m~- 611 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK-YSEDPQVASLAQDLFEELLQIAANYGPMQ- 611 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHhhcchH-
Confidence 8999988888889888999999888876665555666677777777655 56888888888888877776433322222
Q ss_pred cCChHHHHHHhccCC----HHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCC
Q 003227 684 EGGVAPLIALARSEA----EDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGR 758 (837)
Q Consensus 684 ~~~i~~L~~lL~s~~----~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~ 758 (837)
...+|.+++.|..+. ......|+..|..+.. .|..-...+-..+.|++.+..-.+++...-..+-++|+.+....
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 237899999997765 6677777888876654 22223333334677888876544444667778888999887654
Q ss_pred C
Q 003227 759 M 759 (837)
Q Consensus 759 ~ 759 (837)
.
T Consensus 692 ~ 692 (1005)
T KOG2274|consen 692 L 692 (1005)
T ss_pred H
Confidence 4
No 236
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.82 Score=51.74 Aligned_cols=224 Identities=13% Similarity=0.032 Sum_probs=141.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCc
Q 003227 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN 591 (837)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 591 (837)
++++-+.+...+++.+.++..++..|+.+.+.-+-...+...+++...+..+++.+ +-+..+|+..+..+|..+
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy----- 799 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVY----- 799 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhc-----
Confidence 34455555555677788999999999999986666666777789999999999875 788889999888888742
Q ss_pred ccchhhccchHHHHHH-HcCCC---CHHHHHHHHHHHHhhcCCh-hh-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 592 NSAVGQEAGALEALVQ-LTRSP---HEGVRQEAAGALWNLSFDD-RN-REAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 592 ~~~~~~~~~~i~~L~~-lL~~~---~~~~~~~a~~~L~~Ls~~~-~~-~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
.+.++|.+.. ....+ ..+.+..+-.++.++.... +- ..+.. -.+...+...++ ++...|..++
T Consensus 800 ------~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvre---pd~~~RaSS~ 868 (982)
T KOG4653|consen 800 ------PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVRE---PDHEFRASSL 868 (982)
T ss_pred ------chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCC---chHHHHHhHH
Confidence 3567788876 34332 1344555556666654421 11 11110 123344444444 6778899999
Q ss_pred HHHHhcccCccc--hhhhhccCChHHHHHHhc-cCCHHHHHHHHHHHHHHcCCcc-cHHHHH---HcCCHHHHHHHHhcC
Q 003227 666 GALWGLSVSEAN--CIAIGREGGVAPLIALAR-SEAEDVHETAAGALWNLAFNPG-NALRIV---EEGGVPALVHLCSSS 738 (837)
Q Consensus 666 ~~L~~l~~~~~~--~~~l~~~~~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~-~~~~i~---~~~~i~~L~~ll~~~ 738 (837)
.++++++.-... ...+. ..+.-++.+.+ +++..+|++|+..+..+-..-+ .--.+. -......+....+..
T Consensus 869 a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~ 946 (982)
T KOG4653|consen 869 ANLGQLCQLLAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQH 946 (982)
T ss_pred HHHHHHHHHHhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999853221 11122 23444555554 5678899999999988865322 111111 123344555666666
Q ss_pred CcHHHHHHHHHHHHHh
Q 003227 739 GSKMARFMAALALAYM 754 (837)
Q Consensus 739 ~~~~~~~~a~~aL~~l 754 (837)
+++.++..|..++..+
T Consensus 947 ~dd~~klhaql~leei 962 (982)
T KOG4653|consen 947 DDDGLKLHAQLCLEEI 962 (982)
T ss_pred chhHHHHHHHHHHHHH
Confidence 6677888887777665
No 237
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.57 E-value=0.045 Score=37.65 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD 219 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 219 (837)
++|++|+++++ .+++ +......||+|++|++++| .++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence 46778888877 5664 3332346788888888887 344
No 238
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.50 E-value=0.031 Score=51.81 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=38.0
Q ss_pred CCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccccc
Q 003227 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~ 284 (837)
.+...+||++|.......|..++.|++|.+++| +|+... ..+...+|+|..|.|.+|.+..-+=..-...||+|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 445555555554444445555555666655543 332211 122233455555555555442211111122355555555
Q ss_pred ccccc
Q 003227 285 ALNCP 289 (837)
Q Consensus 285 l~~c~ 289 (837)
+-+++
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 55555
No 239
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.35 E-value=0.14 Score=39.44 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccC
Q 003227 617 RQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREG 685 (837)
Q Consensus 617 ~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~ 685 (837)
.+.|++++.+++..+...+.+.+.+.++.++++... ++...+|--|..+|.-++.+.+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~--s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN--SPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh--CCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 567999999999998888888888999999999986 5888999999999999999988887776655
No 240
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.34 E-value=0.029 Score=61.25 Aligned_cols=170 Identities=21% Similarity=0.224 Sum_probs=92.2
Q ss_pred CCcceeeecCcccchHHHHH-cC-CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSIIHL-QA-RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
+.++.|.+.++...+-.... .. ++|++|++++.. +.. +..-...+++|+.|+++ .+ .+.+ +.......++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~--~N-~l~~--l~~~~~~~~~ 187 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IES--LPSPLRNLPNLKNLDLS--FN-DLSD--LPKLLSNLSN 187 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc-hhh--hhhhhhccccccccccC--Cc-hhhh--hhhhhhhhhh
Confidence 45677777666544322222 23 277777777644 222 21223567777777774 22 3333 2222214667
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh-HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEE
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~ 259 (837)
|+.|++++. .+++ +........+|++|.++++..+.. ..+..++++..|.+.++... +. ......++.|+.|+
T Consensus 188 L~~L~ls~N-~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~--~~~~~~l~~l~~L~ 261 (394)
T COG4886 188 LNNLDLSGN-KISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DL--PESIGNLSNLETLD 261 (394)
T ss_pred hhheeccCC-cccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-ec--cchhccccccceec
Confidence 777777776 3332 111112234477777777743333 44566677777766554222 10 23345566788888
Q ss_pred eccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 260 VSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 260 l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
++++.+++-.- .....+++.|++++..
T Consensus 262 ~s~n~i~~i~~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 262 LSNNQISSISS---LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccccccccc---ccccCccCEEeccCcc
Confidence 88876654332 2246778888887765
No 241
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.22 E-value=3.1 Score=43.98 Aligned_cols=150 Identities=18% Similarity=0.115 Sum_probs=104.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhccCh----HHHHHHHHcCCHHHHHHHHhcC-------CHHHHHHHHHHHHhhccCcc
Q 003227 433 LLDLAKSWREGLQSEAAKAIANLSVNA----KVAKAVAEEGGINILAVLARSM-------NRLVAEEAAGGLWNLSVGEE 501 (837)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~l~~~~----~~~~~i~~~g~i~~L~~lL~~~-------~~~~~~~a~~~L~~l~~~~~ 501 (837)
+..+++..+.+-|..|+-..-.+..++ .+++.+.+.-|.+-+-+++.+. +.-.+..++.+|.-.++.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 555666667777878888888887733 3677788888888888888652 34456677778888888775
Q ss_pred ch--HHHHhhCCHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHH
Q 003227 502 HK--GAIADAGGVKALVDLIFKWSSGGD----GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQA 575 (837)
Q Consensus 502 ~~--~~l~~~g~i~~L~~lL~~~~~~~~----~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a 575 (837)
.. +.+++ .||.|.+++....+.+. .+...+-.+|..++..+.....++..|+++.+.++..-.+...-+.-+
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 43 44444 69999999975222221 267788899999999998999999999999999877654322323444
Q ss_pred HHHHHHHhc
Q 003227 576 ARALANLAA 584 (837)
Q Consensus 576 ~~~L~~l~~ 584 (837)
+.++.-...
T Consensus 174 l~Vlll~~~ 182 (698)
T KOG2611|consen 174 LKVLLLLVS 182 (698)
T ss_pred HHHHHHHHH
Confidence 444444443
No 242
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.17 E-value=0.06 Score=56.88 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=70.7
Q ss_pred CCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCC
Q 003227 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~ 182 (837)
++|++|++++|.........-.++|++|++++|.++. .--++|++|++. +..... +..-.++|+
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~--------sLP~sLe~L~L~---~n~~~~-----L~~LPssLk 135 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS--------GLPESVRSLEIK---GSATDS-----IKNVPNGLT 135 (426)
T ss_pred CCCcEEEccCCCCcccCCchhhhhhhheEccCccccc--------ccccccceEEeC---CCCCcc-----cccCcchHh
Confidence 3699999999866543333334699999999997554 123579999995 322221 222235788
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCC-CCCCEeeccCC
Q 003227 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV-LSVRFLSVAGT 237 (837)
Q Consensus 183 ~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l-~~L~~L~ls~~ 237 (837)
.|.+.++.......+.. ...++|++|++++|..+... ..+ .+|++|+++.+
T Consensus 136 ~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP--~~LP~SLk~L~ls~n 187 (426)
T PRK15386 136 SLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILP--EKLPESLQSITLHIE 187 (426)
T ss_pred heecccccccccccccc--ccCCcccEEEecCCCcccCc--ccccccCcEEEeccc
Confidence 88886542221111111 12368999999998654311 123 48999999765
No 243
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.10 E-value=15 Score=44.97 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=96.8
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHH
Q 003227 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGA 505 (837)
Q Consensus 428 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 505 (837)
+.+..++..|..+...+|-.|+++|..+.. ++.... ....-..+..-+.+....|+++|+..++.... .++.-.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 356788889998899999999999999988 553321 11122344455667888999999999996653 4444333
Q ss_pred HHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCC-CHH-HHHHHHHHHHHHh
Q 003227 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK-FEG-VQEQAARALANLA 583 (837)
Q Consensus 506 l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~-~~~-~~~~a~~~L~~l~ 583 (837)
+.+. +.+-+ .+....|++.+..+++.++...+.-..+ +...++++..-+ +++ ++.-+..++.++-
T Consensus 893 yY~~-----i~erI---lDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 893 YYDQ-----IIERI---LDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HHHH-----HHhhc---CCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 3332 33333 4577889999999999999854332222 333455554322 244 8899999999998
Q ss_pred cCCC
Q 003227 584 AHGD 587 (837)
Q Consensus 584 ~~~~ 587 (837)
..+.
T Consensus 960 F~p~ 963 (1692)
T KOG1020|consen 960 FTPV 963 (1692)
T ss_pred ccCC
Confidence 7653
No 244
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.04 E-value=20 Score=44.05 Aligned_cols=143 Identities=9% Similarity=0.042 Sum_probs=94.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (837)
+..++..+..+...+|..|..||..+..-+..-++ ....-..+..-+.+....||+.|+..++.... ++
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~----------~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~ 887 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLS----------RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP 887 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc----------CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH
Confidence 35666677777788999999999998876665432 11122234455666788999999999997554 55
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (837)
+.-.++. ..+..-+.+....||.++..+++.++...+.-..+ +...++++++-+++...+++.+..++.+
T Consensus 888 e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 888 ELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred HHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 5444433 33444455678889999999999998643222222 2345566665344444588888888888
Q ss_pred hhcC
Q 003227 540 LAAD 543 (837)
Q Consensus 540 l~~~ 543 (837)
+...
T Consensus 958 lWF~ 961 (1692)
T KOG1020|consen 958 LWFT 961 (1692)
T ss_pred Hhcc
Confidence 8763
No 245
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.82 E-value=2.3 Score=49.56 Aligned_cols=203 Identities=18% Similarity=0.071 Sum_probs=110.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-cchHHHHhhCCHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhc----C
Q 003227 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKW-SSGGDGVLERAAGALANLAA----D 543 (837)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~-~~~~~~~~~~a~~~L~~l~~----~ 543 (837)
++..+.+++......-.+ |...|..+.... .- ....+..+..+++.. ...++.++..|+-+++.+.. .
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 466777777664332222 333444433221 11 111344455555321 12456677777777777764 2
Q ss_pred C------CchHHHHhcCcHHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC--
Q 003227 544 D------KCSMEVALAGGVHALVMLAR---SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP-- 612 (837)
Q Consensus 544 ~------~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~-- 612 (837)
. ...........++.+...+. +..+.+.+..++.+|+|+.. ...++.+..++...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------------~~~i~~l~~~i~~~~~ 535 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------------PESIPVLLPYIEGKEE 535 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------------GGGHHHHHTTSTTSS-
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------------chhhHHHHhHhhhccc
Confidence 1 11112222345666666665 33346777899999999975 35788888888776
Q ss_pred -CHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHH
Q 003227 613 -HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLI 691 (837)
Q Consensus 613 -~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~ 691 (837)
+..+|..|+.+|..++...+.. +.+.+++++.+ ...+.++|.+|..+|...-.+. ..+..+.
T Consensus 536 ~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n-~~e~~EvRiaA~~~lm~~~P~~---------~~l~~i~ 598 (618)
T PF01347_consen 536 VPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMN-TTEDPEVRIAAYLILMRCNPSP---------SVLQRIA 598 (618)
T ss_dssp S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH--TTS-HHHHHHHHHHHHHT---H---------HHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcC-CCCChhHHHHHHHHHHhcCCCH---------HHHHHHH
Confidence 6789999999999886653322 34567777766 5688999999988886621111 1355566
Q ss_pred HHhc-cCCHHHHHHHHHHH
Q 003227 692 ALAR-SEAEDVHETAAGAL 709 (837)
Q Consensus 692 ~lL~-s~~~~v~~~a~~~L 709 (837)
..+. .++..|..+....|
T Consensus 599 ~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 599 QSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHTT-S-HHHHHHHHHHH
T ss_pred HHHhhCchHHHHHHHHHhc
Confidence 6664 45567766665544
No 246
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=93.75 E-value=0.021 Score=67.51 Aligned_cols=107 Identities=15% Similarity=0.029 Sum_probs=62.5
Q ss_pred hCCCcceeeecCccc--chHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHh
Q 003227 101 RCMNLQKLRFRGAES--ADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~--~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 176 (837)
.|++|++|-+.++.. ..... -..+|.|..|++++|..++ .+......+-+|+.|+++ +..+.. +..-..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~---~t~I~~--LP~~l~ 615 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLS---DTGISH--LPSGLG 615 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhccccc---CCCccc--cchHHH
Confidence 567788888877642 21111 2267899999999876433 344445567788888885 334431 222223
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL 216 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 216 (837)
.++.|.+|++..+..... +.-+...+++|++|.+....
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHhhheecccccccccc--ccchhhhcccccEEEeeccc
Confidence 356777887776532211 12233446788888876653
No 247
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.66 E-value=4.9 Score=46.25 Aligned_cols=167 Identities=19% Similarity=0.064 Sum_probs=98.9
Q ss_pred CHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhc----CCCchHHHHhcCcHHHHHHHHhc---CCCHHHHHHHHHHHHHH
Q 003227 511 GVKALVDLIFKW-SSGGDGVLERAAGALANLAA----DDKCSMEVALAGGVHALVMLARS---CKFEGVQEQAARALANL 582 (837)
Q Consensus 511 ~i~~L~~lL~~~-~~~~~~~~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~L~~ll~~---~~~~~~~~~a~~~L~~l 582 (837)
.+..+.++++.. ....+.++..|+-+++.+.. +.+.....+....++.+...+.. ..+.+.+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 455666676531 22345677777777776654 22211112223356666665543 22355567888999998
Q ss_pred hcCCCCCCcccchhhccchHHHHHHHcC-C--CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHH
Q 003227 583 AAHGDSNSNNSAVGQEAGALEALVQLTR-S--PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPG 659 (837)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~-~--~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~ 659 (837)
.. ...++.+...+. . .+..+|..|+++|..++...+. .+-+.++++..+ ...+++
T Consensus 474 g~--------------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n-~~e~~E 531 (574)
T smart00638 474 GH--------------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLN-RAEPPE 531 (574)
T ss_pred CC--------------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcC-CCCChH
Confidence 75 245666666665 2 2567999999999988753221 134556667665 568899
Q ss_pred HHHHHHHHHHhcccCccchhhhhccCChHHHHHHhc-cCCHHHHHHHHHH
Q 003227 660 LQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-SEAEDVHETAAGA 708 (837)
Q Consensus 660 v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~-s~~~~v~~~a~~~ 708 (837)
+|.+|..+|...--+. ..+..+...+. +++..|..+....
T Consensus 532 vRiaA~~~lm~t~P~~---------~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 532 VRMAAVLVLMETKPSV---------ALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred HHHHHHHHHHhcCCCH---------HHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 9999988886632111 13555666664 3456666655443
No 248
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.57 E-value=3.1 Score=46.33 Aligned_cols=114 Identities=19% Similarity=0.094 Sum_probs=80.1
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHH
Q 003227 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (837)
Q Consensus 428 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 507 (837)
|.+..+++-..+.+..+|..++.+|+.+.........-+-.+-...+..-+.+..+.|+..|+.+|..+-.++..-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence 4556778888889999999999999998873322333333345667777778889999999999999998543110
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHH
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l 550 (837)
+..++..+..+++ .++++++++.|+ .|++-++.....+
T Consensus 161 e~~v~n~l~~liq--nDpS~EVRRaaL---snI~vdnsTlp~I 198 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQ--NDPSDEVRRAAL---SNISVDNSTLPCI 198 (892)
T ss_pred cccHHHHHHHHHh--cCCcHHHHHHHH---HhhccCcccchhH
Confidence 2235677888888 578889998775 4555555444333
No 249
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.46 E-value=0.24 Score=45.48 Aligned_cols=149 Identities=21% Similarity=0.135 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCCC
Q 003227 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVM-LARSCKFEGVQEQAARALANLAAHGDSNS 590 (837)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~-ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (837)
++.++..+.. ....++++..+.-++..+- +..++.. . ..+...+. .+..++ .+-...+..++..+-... ..
T Consensus 5 l~~lL~~L~~-~~~~~~~r~~a~v~l~k~l--~~~~~~~-~-~~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~--~d 76 (157)
T PF11701_consen 5 LDTLLTSLDM-LRQPEEVRSHALVILSKLL--DAAREEF-K-EKISDFIESLLDEGE-MDSLIIAFSALTALFPGP--PD 76 (157)
T ss_dssp CCHHHHHHHC-TTTSCCHHHHHHHHHHHHH--HHHHHHH-H-HHHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTT--HH
T ss_pred HHHHHHHhcc-cCCCHhHHHHHHHHHHHHH--HHhHHHH-H-HHHHHHHHHHHcccc-chhHHHHHHHHHHHhCCC--HH
Confidence 4455555531 1356678888888887773 1111111 1 12333333 333322 334556666666664431 22
Q ss_pred cccchhhccchHHHHHHHcC--CCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHH-HHHHHHHH
Q 003227 591 NNSAVGQEAGALEALVQLTR--SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPG-LQERAAGA 667 (837)
Q Consensus 591 ~~~~~~~~~~~i~~L~~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~-v~~~A~~~ 667 (837)
-....+..+|..+.++.+.. .++..++..++.+|..=+.+...|..+.++ +++.|-..... +.+.. ++..|+-+
T Consensus 77 v~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~--~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 77 VGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKN--SKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTT--CC-HH-CHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHcc--ccchHHHHHHHHHH
Confidence 23445557899999999988 778899999999998888888878777776 78889888854 35566 89999988
Q ss_pred HHhc
Q 003227 668 LWGL 671 (837)
Q Consensus 668 L~~l 671 (837)
|..+
T Consensus 154 L~Kl 157 (157)
T PF11701_consen 154 LCKL 157 (157)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8764
No 250
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.44 E-value=0.1 Score=32.70 Aligned_cols=29 Identities=38% Similarity=0.399 Sum_probs=25.2
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHhhcC
Q 003227 601 ALEALVQLTRSPHEGVRQEAAGALWNLSF 629 (837)
Q Consensus 601 ~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~ 629 (837)
.+|.+++++.+++++||..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999998864
No 251
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.32 E-value=0.14 Score=32.10 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.7
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 687 VAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 687 i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
+|.+++++.+++++||.+|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999874
No 252
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=14 Score=45.31 Aligned_cols=278 Identities=18% Similarity=0.167 Sum_probs=134.8
Q ss_pred cCChhHHHHHHHHHHHhccCh--HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHH
Q 003227 439 SWREGLQSEAAKAIANLSVNA--KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALV 516 (837)
Q Consensus 439 ~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~ 516 (837)
|.-+++++.++.++..++... ..+..+.+ -|+.|++....-.+.+..+...-+.++... +++.+-
T Consensus 1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~~~--LIp~ll~~~s~lE~~vLnYls~r~~~~e~e-----------alDt~R 1208 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHFPK--LIPLLLNAYSELEPQVLNYLSLRLINIETE-----------ALDTLR 1208 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHhchhhhcchhhH--HHHHHHHHccccchHHHHHHHHhhhhhHHH-----------HHHHHH
Confidence 456788999999999998733 33333322 266666666665555544333222222211 111111
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchh
Q 003227 517 DLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (837)
Q Consensus 517 ~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (837)
.-. ...+| +-+..-.++.++ |.. +-...+|.+.++++.+-.-..+..++..+..|+... ..+...
T Consensus 1209 ~s~---akssp-mmeTi~~ci~~i--D~~-----vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~--~~emtP-- 1273 (1702)
T KOG0915|consen 1209 ASA---AKSSP-MMETINKCINYI--DIS-----VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL--GSEMTP-- 1273 (1702)
T ss_pred Hhh---hcCCc-HHHHHHHHHHhh--hHH-----HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh--ccccCc--
Confidence 000 00111 111111111111 000 111357888888887655556677777777776632 011111
Q ss_pred hccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh-h-hHHHHHHcCCHHHHHH-HHhhcCCCCHHHHHHHHHHHHhccc
Q 003227 597 QEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD-R-NREAIAAAGGVEALVV-LAQSCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 597 ~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~-~~~~l~~~g~i~~L~~-ll~~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
.....+..++..+++.++.+++.-+.+...|+... + ..+.+ ++.++. ++.. .+..+.-++.++.+++.
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKL-----ie~~l~~~l~k----~es~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKL-----IETLLADLLGK----DESLKSISCATISNIAN 1344 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHH-----HHHHHHHHhcc----CCCccchhHHHHHHHHH
Confidence 12355677777788899999999888888877652 2 22222 333333 3332 22222455555555443
Q ss_pred Cccchhhhhc-cCChHHHHHHhccCCHHHHHHHHHHHHH-----HcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHH
Q 003227 674 SEANCIAIGR-EGGVAPLIALARSEAEDVHETAAGALWN-----LAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMA 747 (837)
Q Consensus 674 ~~~~~~~l~~-~~~i~~L~~lL~s~~~~v~~~a~~~L~~-----l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a 747 (837)
... ..+-. ...+=|++-+-.... +.+..-|++ +........++.....+-.+.+...++++-.++..+
T Consensus 1345 ~s~--e~Lkn~asaILPLiFLa~~ee----~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~ 1418 (1702)
T KOG0915|consen 1345 YSQ--EMLKNYASAILPLIFLAMHEE----EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQA 1418 (1702)
T ss_pred hhH--HHHHhhHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 211 11111 122333333322211 222233332 222333333334444444555544444445577888
Q ss_pred HHHHHHhhCCCC
Q 003227 748 ALALAYMFDGRM 759 (837)
Q Consensus 748 ~~aL~~l~~~~~ 759 (837)
+.++..++.+-.
T Consensus 1419 Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1419 AKAIRVIAEGLS 1430 (1702)
T ss_pred HHHHHHHccccc
Confidence 888888876654
No 253
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.26 E-value=6.6 Score=40.70 Aligned_cols=166 Identities=17% Similarity=0.071 Sum_probs=107.4
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CCch
Q 003227 471 INILA-VLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKCS 547 (837)
Q Consensus 471 i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~--~~~~ 547 (837)
++.++ ..+++.++.+|+.|+.+|+-.+--+. .+... .++.+...++ .+++.++..|+.++..+... .+.-
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~-~l~l~~~~~~---~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAKE-HLPLFLQALQ---KDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHH-HHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 33343 55678899999999999998885332 11111 3566777774 36889999999999998862 2221
Q ss_pred HH-------HHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhc-cchHHHHHHHcCC----CCHH
Q 003227 548 ME-------VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE-AGALEALVQLTRS----PHEG 615 (837)
Q Consensus 548 ~~-------l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~~~i~~L~~lL~~----~~~~ 615 (837)
.. ......++.+...+.+. +++++..|+..++.|-..+. +.+ ..++..|+-+--+ +++.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~--------i~~~~~vL~~Lll~yF~p~t~~~~~ 171 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGR--------ISDPPKVLSRLLLLYFNPSTEDNQR 171 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHcCcccCCcHH
Confidence 11 11234677788888877 48999999999999987532 222 4556666544322 2455
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhh
Q 003227 616 VRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQS 652 (837)
Q Consensus 616 ~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~ 652 (837)
++..-...+-..+......+..+....++.+..+...
T Consensus 172 LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 172 LRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 5555555566677664444445555677777777765
No 254
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.26 E-value=3.5 Score=43.89 Aligned_cols=272 Identities=17% Similarity=0.070 Sum_probs=138.9
Q ss_pred HHHHHHhhhc-CCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CCh-hHHHHHHHHHHHhcc
Q 003227 381 AGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WRE-GLQSEAAKAIANLSV 457 (837)
Q Consensus 381 i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~-~~~~~a~~~L~~l~~ 457 (837)
|..++.-+.+ ....+|..++.-|+.-+ .++..+..+...|..+.+++.+.+ ++. ..-..++.+++-++.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~--------~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~ 94 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKC--------ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR 94 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHh--------CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc
Confidence 5667776753 34567777776666533 346678899999999999999955 333 334444444455555
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcC-----CHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHh------hCCCC
Q 003227 458 NAKVAKAVAEEGGINILAVLARSM-----NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK------WSSGG 526 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~------~~~~~ 526 (837)
+...-..+.+.+....++++++.. ...........+.. .. ...+..+...+.. .....
T Consensus 95 d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk----------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 163 (361)
T PF07814_consen 95 DGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK----------VQ-QKSRSLCKELLSSGSSWKSPKPPE 163 (361)
T ss_pred CCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhH----------HH-HHHHHHHHHHHhccccccccCCcc
Confidence 554444444444566667777611 00000000000000 00 0011111111110 00111
Q ss_pred HHHHHHHHHHHHHhh--------------c-CCCchHHHHhcCcHHHHHHHHhc----CC-----------CHHHHHHHH
Q 003227 527 DGVLERAAGALANLA--------------A-DDKCSMEVALAGGVHALVMLARS----CK-----------FEGVQEQAA 576 (837)
Q Consensus 527 ~~~~~~a~~~L~~l~--------------~-~~~~~~~l~~~g~i~~L~~ll~~----~~-----------~~~~~~~a~ 576 (837)
..-+..|..++-.++ . .+..++++.+.|++..++..+.+ .. .......+.
T Consensus 164 lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl 243 (361)
T PF07814_consen 164 LSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCL 243 (361)
T ss_pred cccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHH
Confidence 222333444444432 1 24567888888999999998762 10 012334788
Q ss_pred HHHHHHhcCCCCCCcccchhhcc--chH-HHHHHHcC---CCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHH
Q 003227 577 RALANLAAHGDSNSNNSAVGQEA--GAL-EALVQLTR---SPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVL 649 (837)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~--~~i-~~L~~lL~---~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~l 649 (837)
.+|.+.+... ..++...... +.+ ..+..++. .........++..+.|++.+ ++.+..+...+..+.+..+
T Consensus 244 ~ILEs~T~~~---~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i 320 (361)
T PF07814_consen 244 SILESVTFLS---EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLI 320 (361)
T ss_pred HHHHHHHhcC---ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHH
Confidence 8888888773 4444443322 222 22222222 23344567789999999998 4555556555333332221
Q ss_pred Hhh-----------cCCCCHHHHHHHHHHHHhcccC
Q 003227 650 AQS-----------CSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 650 l~~-----------~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
... .....-+...-++++|.|++..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 321 VTSFFCVLSLPNYVPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred HHhhcccccccccccccccchHHHHHHHhHHHheee
Confidence 111 0123344556677888887753
No 255
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.18 E-value=0.22 Score=45.79 Aligned_cols=144 Identities=23% Similarity=0.138 Sum_probs=91.2
Q ss_pred HHHHHHcC--CCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccch-
Q 003227 603 EALVQLTR--SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANC- 678 (837)
Q Consensus 603 ~~L~~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~- 678 (837)
+.++..|. ...+++|..|.-++..+- +..+....+. .-+.+-..+.. ++.+-...|..++..+-.. ++..
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~-~~~~i~~~~~~---~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEK-ISDFIESLLDE---GEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHCC---HHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHH-HHHHHHHHHcc---ccchhHHHHHHHHHHHhCCCHHHHH
Confidence 33444443 356778888888887762 3333332221 22222333332 3333555677777776643 4444
Q ss_pred hhhhccCChHHHHHHhc--cCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHH-HHHHHHHHHHH
Q 003227 679 IAIGREGGVAPLIALAR--SEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKM-ARFMAALALAY 753 (837)
Q Consensus 679 ~~l~~~~~i~~L~~lL~--s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~-~~~~a~~aL~~ 753 (837)
..+...|.++.++.++. +.+..++..++++|..=|.+...|..+.+ .+++.|.+.+..+.++. +|..|+-+|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 44556788888999998 78889999999999887766666655554 78999999996655566 88888888764
No 256
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=9.4 Score=43.29 Aligned_cols=279 Identities=15% Similarity=0.133 Sum_probs=135.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch-HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHH
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSV-NA-KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 507 (837)
.+.+-.+|++....+...|++++.++.. .+ +..+ ++..|--++.++...+|-.|.++|..++......-..+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p------avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP------AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch------HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 3455666777788888999999988876 33 2222 56666677788999999999999999986322111111
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (837)
+. -|-.++ .+.+..+--.|..+|..-. .+.+...+ +..+..++.+-+ .+...-+..++..++..
T Consensus 321 N~----elE~lI---td~NrsIat~AITtLLKTG-~e~sv~rL-----m~qI~~fv~dis-DeFKivvvdai~sLc~~-- 384 (865)
T KOG1078|consen 321 NL----DLESLI---TDSNRSIATLAITTLLKTG-TESSVDRL-----MKQISSFVSDIS-DEFKIVVVDAIRSLCLK-- 384 (865)
T ss_pred ch----hHHhhh---cccccchhHHHHHHHHHhc-chhHHHHH-----HHHHHHHHHhcc-ccceEEeHHHHHHHHhh--
Confidence 11 122222 1122222222222221111 11122222 111222222221 12223333344444432
Q ss_pred CCCcccchhhccchHHHHHHHcCCC-CHHHHHHHHHHHHhhcC-ChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 588 SNSNNSAVGQEAGALEALVQLTRSP-HEGVRQEAAGALWNLSF-DDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 588 ~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~~Ls~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
.+ ....+....|..+|+.+ .-+-+.....++..+.. +++.++ .++..|..+..++ +...-+.
T Consensus 385 -fp-----~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc-----e~~~i~~ 448 (865)
T KOG1078|consen 385 -FP-----RKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC-----EFTQIAV 448 (865)
T ss_pred -cc-----HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc-----cchHHHH
Confidence 11 11234556666666542 33445555555555444 233332 2455666666542 2333344
Q ss_pred HHHHhcccC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHH
Q 003227 666 GALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMA 743 (837)
Q Consensus 666 ~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~ 743 (837)
.+|.-+... |. .......+..+.+...=.+..++.+|..+|.++.. ++..+ ....-.|.+.+.+.+ +.+
T Consensus 449 rILhlLG~EgP~---a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~D-dev 519 (865)
T KOG1078|consen 449 RILHLLGKEGPK---APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSD-DEV 519 (865)
T ss_pred HHHHHHhccCCC---CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCch-HHH
Confidence 444443321 10 01112234444444444667777777777777764 22222 112223444555443 667
Q ss_pred HHHHHHHHHHhh
Q 003227 744 RFMAALALAYMF 755 (837)
Q Consensus 744 ~~~a~~aL~~l~ 755 (837)
|..|.-+|..+.
T Consensus 520 RdrAtf~l~~l~ 531 (865)
T KOG1078|consen 520 RDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHHhh
Confidence 777777777776
No 257
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.09 E-value=0.084 Score=55.09 Aligned_cols=37 Identities=27% Similarity=0.637 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHccCC-hHhHHHHHhhcHHHHHHhc
Q 003227 39 DWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGA 75 (837)
Q Consensus 39 ~~~~LP~eil~~I~~~l~-~~d~~~~~~v~~~w~~~~~ 75 (837)
.|++||+|+|..|..+|+ .-|+.+.+.||+.||....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 599999999999999996 7899999999999999743
No 258
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.04 E-value=0.084 Score=57.60 Aligned_cols=148 Identities=19% Similarity=0.203 Sum_probs=98.6
Q ss_pred CcceeeecCcccchH-HHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCC
Q 003227 104 NLQKLRFRGAESADS-IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (837)
Q Consensus 104 ~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~ 182 (837)
+|+.|+++++..... .....+++|+.|++++|. +++ +.......++|+.|++++ +.+.+.. ........|+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~--l~~~~~~~~~L~~L~ls~---N~i~~l~--~~~~~~~~L~ 212 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSD--LPKLLSNLSNLNNLDLSG---NKISDLP--PEIELLSALE 212 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhh--hhhhhhhhhhhhheeccC---CccccCc--hhhhhhhhhh
Confidence 899999999877664 234479999999999977 443 333333678999999963 3443322 1112344599
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC-hHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEec
Q 003227 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD-EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (837)
Q Consensus 183 ~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~ 261 (837)
+|.+++.+.+.. +. ....++++..|.+.++.... ...+..+++|++|++++| .+++... .....+|+.|+++
T Consensus 213 ~l~~~~N~~~~~--~~-~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s 285 (394)
T COG4886 213 ELDLSNNSIIEL--LS-SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLS 285 (394)
T ss_pred hhhhcCCcceec--ch-hhhhcccccccccCCceeeeccchhccccccceeccccc-ccccccc---ccccCccCEEecc
Confidence 999988742222 11 12245778888877774333 377788899999999987 3433322 4567889999999
Q ss_pred cCCCC
Q 003227 262 RTDVG 266 (837)
Q Consensus 262 ~~~i~ 266 (837)
++.+.
T Consensus 286 ~n~~~ 290 (394)
T COG4886 286 GNSLS 290 (394)
T ss_pred Ccccc
Confidence 97543
No 259
>PLN03150 hypothetical protein; Provisional
Probab=92.93 E-value=0.12 Score=59.60 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=60.0
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCC
Q 003227 127 LRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPN 206 (837)
Q Consensus 127 L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 206 (837)
++.|+|+++. ++.. +..-...+++|+.|+|++ + .+.. .+......+++|+.|+|+++ .++...-..+. .+++
T Consensus 420 v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~--N-~l~g-~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSG--N-SIRG-NIPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTS 491 (623)
T ss_pred EEEEECCCCC-cccc-CCHHHhCCCCCCEEECCC--C-cccC-cCChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCC
Confidence 6777777764 3221 222234578888888852 3 3321 12222345788888888887 55543223333 4688
Q ss_pred ccEEEecCCCCCCh--HHhhC-CCCCCEeeccCCCC
Q 003227 207 LTDIGFLDCLNVDE--VALGN-VLSVRFLSVAGTSN 239 (837)
Q Consensus 207 L~~L~l~~~~~~~~--~~l~~-l~~L~~L~ls~~~~ 239 (837)
|++|+|++|..... ..+.. ..++..+++.+|..
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 88888888743222 23433 34667788877643
No 260
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.83 E-value=10 Score=40.57 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHhh--hcCcCchhhHHHhhh-HHHHHHhhhcC---CHHHHHHHHHHhhccccccCcccccchhhHH
Q 003227 349 IMTWLEWILSHILLRTA--ESNPQGLDDFWLKQG-AGLLLSLMQST---QEDVQERAATGLATFVVINDENASIDCGRAE 422 (837)
Q Consensus 349 ~~~~l~~l~s~~l~~l~--~~~~~~~~~~~~~~~-i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 422 (837)
....+.++++....-+. .......+.++..+. ...|..++++. .+.+-..|+..+..+...+++. ..
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~-------~~ 145 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS-------FS 145 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch-------hH
Confidence 33444444444332222 344445555444234 35666666543 3778889999999887766655 55
Q ss_pred HHHHhCcHHHHHHHHh-c---CChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc
Q 003227 423 AVMKDGGIRLLLDLAK-S---WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS 480 (837)
Q Consensus 423 ~i~~~g~i~~Lv~lL~-~---~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~ 480 (837)
.+.+.|.++.+++.+. . ++.++-..--.++..++.+.+..+.+.+.+.++.+++++.+
T Consensus 146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 7999999999999998 4 46677777778888899999999999999999999998755
No 261
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.79 E-value=0.096 Score=30.46 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=11.9
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHH
Q 003227 178 CPKLKKLRLSGIRDICGDAINALA 201 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~ 201 (837)
|++|++|+|++| .|+++++..++
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 355666666666 46666665554
No 262
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=5.8 Score=47.06 Aligned_cols=219 Identities=14% Similarity=0.074 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCchHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccch
Q 003227 524 SGGDGVLERAAGALANLAADDKCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGA 601 (837)
Q Consensus 524 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 601 (837)
+.+..+|..+-.+|..++..+......... .....|.+-+++.. ...+...+.+|..+-.... .+.. .++ ...
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~--~e~~-~~i-~k~ 739 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLS--AEHC-DLI-PKL 739 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhcc--HHHH-HHH-HHH
Confidence 457789999999999999875544333222 23344555555554 5667788888887765421 1111 122 233
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhhcCC-----hh-hH-HHHHHcCCHHHHHHHHhhcCCCC-HHHHHHHHHHHHhccc
Q 003227 602 LEALVQLTRSPHEGVRQEAAGALWNLSFD-----DR-NR-EAIAAAGGVEALVVLAQSCSNAS-PGLQERAAGALWGLSV 673 (837)
Q Consensus 602 i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-----~~-~~-~~l~~~g~i~~L~~ll~~~~~~~-~~v~~~A~~~L~~l~~ 673 (837)
|+.++-.++..+...+..|-.+|..++.. +. .+ .. .+..++..+..+..++ ..+......++..+..
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~-----~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASA-----ILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHH-----HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 34444444777888999998888887731 11 11 11 3444444443311122 2222222444444432
Q ss_pred CccchhhhhccC----ChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHH
Q 003227 674 SEANCIAIGREG----GVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAA 748 (837)
Q Consensus 674 ~~~~~~~l~~~~----~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~ 748 (837)
... .+.+.+ .++.+...|.+.+++++..|+..+..++. .|+..-.-..+..++.+..++++.. -.++..+-
T Consensus 815 e~~---~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr 890 (1176)
T KOG1248|consen 815 EFK---NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKVR 890 (1176)
T ss_pred HHh---ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHH
Confidence 211 122223 34445555678999999999999999876 4544433333445677777776653 55666666
Q ss_pred HHHHHhhC
Q 003227 749 LALAYMFD 756 (837)
Q Consensus 749 ~aL~~l~~ 756 (837)
..|.-+..
T Consensus 891 ~LlekLir 898 (1176)
T KOG1248|consen 891 LLLEKLIR 898 (1176)
T ss_pred HHHHHHHH
Confidence 65555543
No 263
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=92.70 E-value=0.84 Score=52.10 Aligned_cols=149 Identities=16% Similarity=0.063 Sum_probs=94.5
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh-ccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChh
Q 003227 554 GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ-EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR 632 (837)
Q Consensus 554 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~ 632 (837)
..+|.++..+...+ ...+..-..+|.++-.+ .|. ...+- -...+|.|++.|..+|..+|-.+..++.-+....+
T Consensus 867 ~ivP~l~~~~~t~~-~~~K~~yl~~LshVl~~---vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 867 DIVPILVSKFETAP-GSQKHNYLEALSHVLTN---VPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred hhHHHHHHHhccCC-ccchhHHHHHHHHHHhc---CCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 45788888777433 55566667777777653 221 11111 23567888889999999999988888876544322
Q ss_pred hHHHHHHcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhccc-CccchhhhhccCChHHHHHHhccCCHHHHHHHHHH
Q 003227 633 NREAIAAAGGVEALVVLAQSCSNA-SPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSEAEDVHETAAGA 708 (837)
Q Consensus 633 ~~~~l~~~g~i~~L~~ll~~~~~~-~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~ 708 (837)
.-..---.-.++.++.+=.+ ++. ...+|..|+..|..+.. -|...-.-.....+..|...|.++.--||..|+.+
T Consensus 942 tL~t~~~~Tlvp~lLsls~~-~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSD-NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 21111111245555555444 222 27899999999999987 45444344445577888888887777788888765
No 264
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.65 E-value=8.2 Score=41.79 Aligned_cols=176 Identities=16% Similarity=0.102 Sum_probs=116.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCchH
Q 003227 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSG--GDGVLERAAGALANLAADDKCSM 548 (837)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~--~~~~~~~a~~~L~~l~~~~~~~~ 548 (837)
...+.+++.+++...+..|...|..++.+......++...|+..|..++++ ... ..++....+.++..+-...-..-
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~lied-g~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIED-GRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHc-CccchHHHHHHHHHHHHHHHHhhceeee
Confidence 456778888888888888999999999999999999999999999999975 222 44566666666666554322111
Q ss_pred HHHhcCcHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhh
Q 003227 549 EVALAGGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (837)
Q Consensus 549 ~l~~~g~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 627 (837)
..+...+|.....+..- ..+..+...|+..|.++... .......+.++--+..|+..+...+..++..|...+..+
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~---s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG---SDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC---ChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 11122233333333321 11345667888888888875 333455666777889999999999999999887777666
Q ss_pred cCC--hhhHHHHHHcCCHHHHHHHH
Q 003227 628 SFD--DRNREAIAAAGGVEALVVLA 650 (837)
Q Consensus 628 s~~--~~~~~~l~~~g~i~~L~~ll 650 (837)
-.. ++-|..+.+.-....+...+
T Consensus 241 ~~~a~~~~R~~~~~~l~~~~~R~ai 265 (713)
T KOG2999|consen 241 FRKAPDDKRFEMAKSLEQKQFRNAI 265 (713)
T ss_pred HhhCChHHHHHHHHHHHHHHHHHHH
Confidence 543 33455555543334444433
No 265
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.56 E-value=0.086 Score=30.66 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=8.6
Q ss_pred CCccEEEeccCCCCHHHHHH
Q 003227 253 PKLVGLDVSRTDVGPITISR 272 (837)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~ 272 (837)
++|++|+|++|.++++++..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34445555554444444443
No 266
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.53 E-value=0.89 Score=44.88 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHH
Q 003227 526 GDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (837)
Q Consensus 526 ~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~ 604 (837)
++.....|+.+|.-++- ++..+..+.....+..++.++.....+.++.+++.+|..+... ++.+...+.+.+|+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld---~p~N~r~FE~~~Gl~~ 180 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD---SPENQRDFEELNGLST 180 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc---ChHHHHHHHHhCCHHH
Confidence 34456677888888886 7888888888899999999997655689999999999998886 7888889999999999
Q ss_pred HHHHcCCC--CHHHHHHHHHHHHhh
Q 003227 605 LVQLTRSP--HEGVRQEAAGALWNL 627 (837)
Q Consensus 605 L~~lL~~~--~~~~~~~a~~~L~~L 627 (837)
++.++++. +.+++..++..|.-.
T Consensus 181 v~~llk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 181 VCSLLKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred HHHHHccccccHHHhHHHHHHHHHH
Confidence 99999876 667777777766543
No 267
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.37 E-value=13 Score=41.75 Aligned_cols=104 Identities=19% Similarity=0.008 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHH
Q 003227 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (837)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l 550 (837)
+..+++...+++..|+.+.+.+|..+.........-+-.+....+..-+ .+..+.++..|+.+|..+-.++..-
T Consensus 87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl---~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRL---KDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH---hccCchHHHHHHHHHHHHhcCCCCC---
Confidence 4555555667899999999999999987432222222222344444444 3578899999999999997533211
Q ss_pred HhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 551 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
+..++..+..+++..++++|++.|. .|++.
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaL---snI~v 190 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAAL---SNISV 190 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHH---Hhhcc
Confidence 1235777888888877799998765 45544
No 268
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=5.7 Score=42.45 Aligned_cols=145 Identities=12% Similarity=0.024 Sum_probs=84.3
Q ss_pred HHHhcCChhHHHHHHHHHHHhccC-hHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCH
Q 003227 435 DLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGV 512 (837)
Q Consensus 435 ~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i 512 (837)
.-.++++..++..|++.|++.+.. |+-...-... .+..++.-|-+ .+.+|+..++.+|..+...-.+... ..+.+
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l--~~~~l 341 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL--ESYLL 341 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch--hhhch
Confidence 333457888999999999999884 5333222211 25566655544 5788888888888877653222211 11223
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhc--CCCchHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 513 KALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 513 ~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
+.-+++-.-+.+.+++++..+...++.|+. ....+..+.+. +...+++..+.+.+ +.+ ..||+.....+.
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~-p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN-PYV-ARACRSELRTCY 415 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC-hHH-HHHHHHHHHhcC
Confidence 332332222356889999999988888886 33444444331 23334445555554 544 566666666654
No 269
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.97 E-value=0.088 Score=48.91 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCC--CCh-HHhhCCCCCCEeeccCC
Q 003227 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN--VDE-VALGNVLSVRFLSVAGT 237 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~--~~~-~~l~~l~~L~~L~ls~~ 237 (837)
+++|.+|.+++. .|+.-. ..+....|+|..|.+.+|.. +.| +.+..||+|++|.+-+|
T Consensus 63 l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 63 LPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 444555555444 333211 11223335555555554421 111 23344455555554443
No 270
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=3.1 Score=47.43 Aligned_cols=181 Identities=13% Similarity=-0.013 Sum_probs=117.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCc
Q 003227 476 VLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGG 555 (837)
Q Consensus 476 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~ 555 (837)
..+.++.+.++..|+..|..+......+..+...+.+...++.++ ++++-+.-+|...+..|+.- .....
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk---dedsyvyLnaI~gv~~Lcev-------y~e~i 803 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK---DEDSYVYLNAIRGVVSLCEV-------YPEDI 803 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc---ccCceeeHHHHHHHHHHHHh-------cchhh
Confidence 334456677899999999999987777788888888999999996 47777888888877777742 33456
Q ss_pred HHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChh
Q 003227 556 VHALVMLARSCKF---EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR 632 (837)
Q Consensus 556 i~~L~~ll~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~ 632 (837)
+|.+.+...+..+ ++.+..+-.++.++... ..+..... ..-.+..++...++++...|..+++++++++.-..
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa---~Gel~~~y-~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQA---LGELVFKY-KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHH---hccHHHHH-HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 7777775443321 23333444666665542 11111111 12344555666777777789999999998876422
Q ss_pred h--HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC
Q 003227 633 N--REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 633 ~--~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
. ...+. ..+..++.+... +++.-+|.+|+-.+..+-.+
T Consensus 880 ~~vsd~~~--ev~~~Il~l~~~--d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 880 FQVSDFFH--EVLQLILSLETT--DGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhhhHHHH--HHHHHHHHHHcc--CCchhhHHHHHHHHHHHHhc
Confidence 1 11222 235555666654 68889999999988886543
No 271
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=6.7 Score=41.95 Aligned_cols=157 Identities=15% Similarity=0.035 Sum_probs=91.0
Q ss_pred hhCCHHHHHHHH-HhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 508 DAGGVKALVDLI-FKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 508 ~~g~i~~L~~lL-~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
+.|.+..++..+ ....+.+..++..|+..|+|.+.. |+-.... ..-.+..++.-|.+..+.+|+..+..+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 334444444333 223456678899999999999986 3322222 2234666777777777789999999988888653
Q ss_pred CCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh--hhHHHHHH--cCCHHHHHHHHhhcCCCCHHHH
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD--RNREAIAA--AGGVEALVVLAQSCSNASPGLQ 661 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~l~~--~g~i~~L~~ll~~~~~~~~~v~ 661 (837)
.. +.+....+ ..+.-.+..+..+.+++++.+|...+..|+... +.+..+.+ .+...+++-.+.+ .++.+-
T Consensus 331 ~~-~~~l~~~~--l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d---~~p~va 404 (533)
T KOG2032|consen 331 AS-NDDLESYL--LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQD---PNPYVA 404 (533)
T ss_pred hh-hcchhhhc--hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCC---CChHHH
Confidence 11 11111111 133344566678889999999988888777642 33444443 1223333333443 666665
Q ss_pred HHHHHHHHhcc
Q 003227 662 ERAAGALWGLS 672 (837)
Q Consensus 662 ~~A~~~L~~l~ 672 (837)
. |++.....+
T Consensus 405 ~-ACr~~~~~c 414 (533)
T KOG2032|consen 405 R-ACRSELRTC 414 (533)
T ss_pred H-HHHHHHHhc
Confidence 4 444443333
No 272
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.34 E-value=0.019 Score=62.89 Aligned_cols=169 Identities=19% Similarity=0.097 Sum_probs=82.9
Q ss_pred CCCcceeeecCcccchHHH-HHcCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCC
Q 003227 102 CMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITD-ATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~c~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~ 179 (837)
+++|+.|++.++....-.- ...+++|+.|++++.. +++ .++ ..++.|+.|++. .+.+.+.. .+ ..++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l----~~l~~L~~L~l~---~N~i~~~~--~~-~~l~ 162 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGL----STLTLLKELNLS---GNLISDIS--GL-ESLK 162 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccc-cccccch----hhccchhhheec---cCcchhcc--CC-ccch
Confidence 3566777776665443222 3356777777777754 332 222 224447777774 22332211 11 1256
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCC--CccE
Q 003227 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP--KLVG 257 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~--~L~~ 257 (837)
+|+.++++++ .+++..-.. ...+++++.+.+.++.....+.+..+..+..+++..+....-.++. ..+ +|+.
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~----~~~~~~L~~ 236 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLN----ELVMLHLRE 236 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcc----cchhHHHHH
Confidence 6777777766 333321101 2345677777777764444444444444444444433211111111 111 3777
Q ss_pred EEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 258 L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
++++++.+.... .....++++..+++.+..
T Consensus 237 l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 237 LYLSGNRISRSP--EGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HhcccCcccccc--ccccccccccccchhhcc
Confidence 777777654321 112236667777776554
No 273
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=5.8 Score=42.97 Aligned_cols=131 Identities=18% Similarity=0.094 Sum_probs=86.7
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhc
Q 003227 604 ALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR 683 (837)
Q Consensus 604 ~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~ 683 (837)
.+-+++.+.++-+|...+-++..--... ...|++..|+...-+ +.+.+||.+|+.+|..+|.....
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GT------gn~~vv~~lLh~avs--D~nDDVrRAAViAlGfvc~~D~~------ 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGT------GNLGVVSTLLHYAVS--DGNDDVRRAAVIALGFVCCDDRD------ 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcC------CcchhHhhhheeecc--cCchHHHHHHHHheeeeEecCcc------
Confidence 4556677777777777655554211111 123567777777332 48889999999999988865433
Q ss_pred cCChHHHHHHh-ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 684 EGGVAPLIALA-RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 684 ~~~i~~L~~lL-~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
.+...+++| .+.++.||...+.+|.-.|.....+ -++..|-.++.+. .+-||..|..+++-+...
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~-~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDT-NDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCc-HHHHHHHHHHHHHHHHhh
Confidence 566666777 5677889999999998888755443 2344555556555 477999999888877543
No 274
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=91.18 E-value=0.14 Score=60.70 Aligned_cols=32 Identities=16% Similarity=0.436 Sum_probs=12.7
Q ss_pred CCccEEEecCCCCCCh--HHhhCCCCCCEeeccC
Q 003227 205 PNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAG 236 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~ 236 (837)
|.|+.||+++|..++. ..++.+-+|++|++++
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 4444444444333332 2333344444444443
No 275
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=91.15 E-value=0.91 Score=35.04 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhC
Q 003227 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAG 510 (837)
Q Consensus 445 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g 510 (837)
.+.|++++++++..+.....+-+.+.++.++++... +...+|-.|..+|.-++.+.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 468999999999988888888888899999999864 678899999999999999888877776654
No 276
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=91.15 E-value=0.075 Score=54.43 Aligned_cols=61 Identities=23% Similarity=0.073 Sum_probs=28.7
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecC
Q 003227 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSG 188 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 188 (837)
..++|+.|+|+++. ++.-+- ..+++.++|.+|.+. +.++|++..-..+ .++.+|+.|.++-
T Consensus 89 ~l~~LRrLdLS~N~-Is~I~p-~AF~GL~~l~~Lvly--g~NkI~~l~k~~F-~gL~slqrLllNa 149 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNN-ISFIAP-DAFKGLASLLSLVLY--GNNKITDLPKGAF-GGLSSLQRLLLNA 149 (498)
T ss_pred chhhhceecccccc-hhhcCh-HhhhhhHhhhHHHhh--cCCchhhhhhhHh-hhHHHHHHHhcCh
Confidence 45677777777654 332211 122345555555553 2345554332222 2344455555543
No 277
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.04 E-value=7.5 Score=44.74 Aligned_cols=223 Identities=14% Similarity=0.017 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHH
Q 003227 481 MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV 560 (837)
Q Consensus 481 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~ 560 (837)
..|.+.-++..++...+........+... .+...+..+. .+..+.++..|+++++..+...-.... ..+.++.|.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~--~~~~~~~ki~a~~~~~~~~~~~vl~~~--~p~ild~L~ 536 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALT--MDVPPPVKISAVRAFCGYCKVKVLLSL--QPMILDGLL 536 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhc--cCCCCchhHHHHHHHHhccCceecccc--chHHHHHHH
Confidence 45666557777777666532121222111 2334445553 345566788888888777733222211 124567777
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHc--CCCCHHHHHHHHHHHHhhcCChhhHHHHH
Q 003227 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT--RSPHEGVRQEAAGALWNLSFDDRNREAIA 638 (837)
Q Consensus 561 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~ 638 (837)
++....+ .++......+|+..+..+. -.....+..+.|.++.+. .+.+|.+...+-.++..++....+.+-+.
T Consensus 537 qlas~~s-~evl~llmE~Ls~vv~~dp----ef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~ 611 (1005)
T KOG2274|consen 537 QLASKSS-DEVLVLLMEALSSVVKLDP----EFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ 611 (1005)
T ss_pred HHccccc-HHHHHHHHHHHHHHhccCh----hhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH
Confidence 7776665 7888888899999888532 223334566777777764 34577666666666666665444433332
Q ss_pred HcCCHHHHHHHHhhcC-CCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHH-hccCCHHHHHHHHHHHHHHcC
Q 003227 639 AAGGVEALVVLAQSCS-NASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIAL-ARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 639 ~~g~i~~L~~ll~~~~-~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~l-L~s~~~~v~~~a~~~L~~l~~ 714 (837)
+ ..+|.++..|.... ........-|+.+|..+..+ +..-....-+-++|++.+. +++++.++-.++-++|+.+..
T Consensus 612 e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 612 E-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred H-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 2 37999999998711 12266677777777766643 2222223333467887776 488999999999999998865
No 278
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.73 E-value=0.1 Score=57.13 Aligned_cols=82 Identities=18% Similarity=0.044 Sum_probs=36.7
Q ss_pred hCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccc
Q 003227 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~ 282 (837)
.|++|++|++++|.-.+..++..++.|+.|++++|.--+..+ ...++.|+.++++++.+.+-.-.. ...+.+++.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~ 190 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEE 190 (414)
T ss_pred hhhcchheeccccccccccchhhccchhhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHH
Confidence 345555555555522223455555555555555542111111 111455555555555443222200 123555555
Q ss_pred ccccccc
Q 003227 283 LCALNCP 289 (837)
Q Consensus 283 l~l~~c~ 289 (837)
+.+.++.
T Consensus 191 l~l~~n~ 197 (414)
T KOG0531|consen 191 LDLGGNS 197 (414)
T ss_pred HhccCCc
Confidence 6555555
No 279
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.46 E-value=30 Score=37.78 Aligned_cols=298 Identities=15% Similarity=0.041 Sum_probs=156.0
Q ss_pred CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC-------ChhHHHHHHHHHHHhcc--ChHHH
Q 003227 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-------REGLQSEAAKAIANLSV--NAKVA 462 (837)
Q Consensus 392 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~l~~--~~~~~ 462 (837)
+.+.......+|..+.....+.. . ........+...++.+.++.-.. ++.+...+..++..+.. +.+..
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~-~-~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q 133 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDK-Q-FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ 133 (415)
T ss_pred ChHHHHHHHHHHHHHHHhccccc-c-cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH
Confidence 44555556666666554443332 0 01122333444667777665431 13445555555555554 44444
Q ss_pred HHHHHcCCHHHHHHHHh----------c------CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCC
Q 003227 463 KAVAEEGGINILAVLAR----------S------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (837)
Q Consensus 463 ~~i~~~g~i~~L~~lL~----------~------~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~ 526 (837)
+.+++ .+..+.- . .......-...++..+-.+-... . ....+..++.+.. ...+
T Consensus 134 ~~~~~-----~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~--~~~ll~~l~~~~~--~~~~ 203 (415)
T PF12460_consen 134 QEILD-----ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-D--LEELLQSLLNLAL--SSED 203 (415)
T ss_pred HHHHH-----HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-C--HHHHHHHHHHHHH--cCCC
Confidence 54432 2333221 0 11112222333444444322111 1 1114556666665 3455
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCC----HHHHHHHHHHHHHHhcCCCCCCcccchhhccchH
Q 003227 527 DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKF----EGVQEQAARALANLAAHGDSNSNNSAVGQEAGAL 602 (837)
Q Consensus 527 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i 602 (837)
+..+..++.++..+...-.....+ ...+..+........+ ........|+...+...+++ .....+
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~--------~~~~~~ 273 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP--------LATELL 273 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc--------hHHHHH
Confidence 778888888888777531111100 1223333333311111 22333444555555553321 123567
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhh--------HHHHHHcC----CHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 003227 603 EALVQLTRSPHEGVRQEAAGALWNLSFD-DRN--------REAIAAAG----GVEALVVLAQSCSNASPGLQERAAGALW 669 (837)
Q Consensus 603 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~--------~~~l~~~g----~i~~L~~ll~~~~~~~~~v~~~A~~~L~ 669 (837)
..|+.++.+ +++...|+.++.-+..+ ++. ...+.... .++.|++..+. .+.+.+..-..+|.
T Consensus 274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~---~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE---ADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh---cChhhHHHHHHHHH
Confidence 778888877 66788888888887766 321 12222222 46666666655 55558888899999
Q ss_pred hcccCccchhhhhc-cCChHHHHHHhccCCHHHHHHHHHHHHHHcCCc
Q 003227 670 GLSVSEANCIAIGR-EGGVAPLIALARSEAEDVHETAAGALWNLAFNP 716 (837)
Q Consensus 670 ~l~~~~~~~~~l~~-~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~ 716 (837)
++..+-.....+-+ ...+|.|++.|..++++++..++.+|..+..+.
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 98876332222222 246777888898899999999999999988644
No 280
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.38 E-value=19 Score=41.39 Aligned_cols=164 Identities=20% Similarity=0.062 Sum_probs=95.3
Q ss_pred cHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcC----CCCHHHHHHHHHHHHhh
Q 003227 555 GVHALVMLARSC---KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR----SPHEGVRQEAAGALWNL 627 (837)
Q Consensus 555 ~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~~~~~a~~~L~~L 627 (837)
.+..+..++.++ ..+.+...|.-++.++....-.+........-...++.+...|. ..+.+-+..++.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 456666776643 23556667777777766521111111111112345666665553 34555667788899988
Q ss_pred cCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhc--cCCHHHHHH
Q 003227 628 SFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALAR--SEAEDVHET 704 (837)
Q Consensus 628 s~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~--s~~~~v~~~ 704 (837)
... ..+..+..++......+..+|..|+++|..++.. +. ..-+.++.+.. +.++++|.+
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHH
Confidence 653 2455666666522346788999999999987642 22 13455667764 456889988
Q ss_pred HHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHH
Q 003227 705 AAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARF 745 (837)
Q Consensus 705 a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~ 745 (837)
|..+|... +|. ...+..+.+.+....+..|..
T Consensus 536 A~~~lm~t--~P~-------~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 536 AVLVLMET--KPS-------VALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHhc--CCC-------HHHHHHHHHHHhhcCcHHHHH
Confidence 87777653 232 123556667776655555543
No 281
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.20 E-value=4 Score=48.28 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=113.5
Q ss_pred cHHHHHHHHhc----CChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhccC-cc
Q 003227 429 GIRLLLDLAKS----WREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVG-EE 501 (837)
Q Consensus 429 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~-~~ 501 (837)
..|.++...+. ++|++|..|.-+|+.+.. +.+.+.. .++.++..+. ++++.++..++.+++.++.. +.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 45666777743 689999999999999776 5555443 5889999997 78999999999999998853 21
Q ss_pred chHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003227 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (837)
Q Consensus 502 ~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (837)
..+. --+.|...| .+.++.+++.|+.+|.+|-.++- +.-.|.+..+...+.+++ ++++..|-.....
T Consensus 995 lie~-----~T~~Ly~rL---~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~-~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRL---RDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPN-AEISDLAKSFFKE 1061 (1251)
T ss_pred ccch-----hhHHHHHHh---cCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCc-HHHHHHHHHHHHH
Confidence 1111 123445555 56899999999999999975443 333588999999999886 8888888888888
Q ss_pred HhcCCCCCCcccchhhccchHHHHHHHcCCC
Q 003227 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (837)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~ 612 (837)
|+..+ +. -...+|.++.-|.+.
T Consensus 1062 ls~k~--n~-------iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1062 LSSKG--NT-------IYNLLPDILSRLSNG 1083 (1251)
T ss_pred hhhcc--cc-------hhhhchHHHHhhccC
Confidence 87643 11 135666666666654
No 282
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.12 E-value=0.37 Score=29.25 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=17.7
Q ss_pred CCccEEEeccCCCCHHHHHHHHhc
Q 003227 253 PKLVGLDVSRTDVGPITISRLLTS 276 (837)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l~~~ 276 (837)
++|+.|||++|.+++++...+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 467888888888888887776553
No 283
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.72 E-value=18 Score=42.31 Aligned_cols=135 Identities=17% Similarity=0.085 Sum_probs=81.1
Q ss_pred CHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhhc----CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003227 511 GVKALVDLIFKW-----SSGGDGVLERAAGALANLAA----DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (837)
Q Consensus 511 ~i~~L~~lL~~~-----~~~~~~~~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (837)
.++-+++++.++ ...++.-+.-|+.++++++. ....+. ..+.=.++.+...++++. --.+..||+++..
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPY-GYLRARACWVLSQ 488 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCch-hHHHHHHHHHHHH
Confidence 355566666531 23345666778888888874 122222 222224555666667654 7788999999999
Q ss_pred HhcCCCCCCcccchhhccchHHHHHHHcC-CCCHHHHHHHHHHHHhhcCChh-hHHHHHHc--CCHHHHHHHHhh
Q 003227 582 LAAHGDSNSNNSAVGQEAGALEALVQLTR-SPHEGVRQEAAGALWNLSFDDR-NREAIAAA--GGVEALVVLAQS 652 (837)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~-~~~~l~~~--g~i~~L~~ll~~ 652 (837)
.+..+ .+....-..+++...+.|. +.+-.|+-.|+-||..+-.+.+ ..+.+..+ +.++.|+.+.+.
T Consensus 489 ~~~~d-----f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 489 FSSID-----FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHhcc-----CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 98532 1222223456677777777 6677899999999998766633 33434332 334455555544
No 284
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=26 Score=41.96 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=123.4
Q ss_pred hcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHH
Q 003227 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVA 466 (837)
Q Consensus 389 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~ 466 (837)
++.+..+|..+...|..+... +............ ....|..-+++.....|..++.+|..+.. +.+....+.
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~-----I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDD-----IFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHH-----HHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 445788999999999987765 1111111111111 12345555555566677777777777665 234444433
Q ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc--C--ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHH--HHHHHHh
Q 003227 467 EEGGINILAVLARSMNRLVAEEAAGGLWNLSV--G--EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA--AGALANL 540 (837)
Q Consensus 467 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~--~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a--~~~L~~l 540 (837)
.. |+.++-.++..+...++.|..+|..+.. . ++..+. ....+..++..+...- -++..+..+ +-++..+
T Consensus 738 k~--I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl-~gd~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 738 KL--IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGL-VGDSTRVVASDIVAITHI 812 (1176)
T ss_pred HH--HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHH
Confidence 22 4444444477788888888888888872 1 111110 1113444555553211 122222222 3333333
Q ss_pred hcCC-CchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHH
Q 003227 541 AADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQE 619 (837)
Q Consensus 541 ~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~ 619 (837)
..+. ..-..-.-.+.+..+..++.+.+ +++...|++.+..++.. .++....-.....++.+..++++....++..
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~s-reI~kaAI~fikvlv~~---~pe~~l~~~~~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNS-REIAKAAIGFIKVLVYK---FPEECLSPHLEELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHc---CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 3221 11111111234555555666665 99999999999999875 4433333334457788888888777788887
Q ss_pred HHHHHHhhcC
Q 003227 620 AAGALWNLSF 629 (837)
Q Consensus 620 a~~~L~~Ls~ 629 (837)
+-..|-.|..
T Consensus 889 vr~LlekLir 898 (1176)
T KOG1248|consen 889 VRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 285
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.69 E-value=0.21 Score=51.33 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=62.1
Q ss_pred eeeecCcccc-hHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCC---CCC
Q 003227 107 KLRFRGAESA-DSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP---KLK 182 (837)
Q Consensus 107 ~L~l~~~~~~-~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~---~L~ 182 (837)
.+.++.+... -+....+.++|.-|+++++. +.+ +..-......|+.|+++. + .++.+.++|- .|+
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~--LP~e~~~lv~Lq~LnlS~---N-----rFr~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LND--LPEEMGSLVRLQTLNLSF---N-----RFRMLPECLYELQTLE 484 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccch-hhh--cchhhhhhhhhheecccc---c-----ccccchHHHhhHHHHH
Confidence 3444444332 22233367788888888754 222 111122344588888852 1 2223333332 233
Q ss_pred EEEecCC--CCCCHHHHHHHHhhCCCccEEEecCCCCCCh-HHhhCCCCCCEeeccCCCCC
Q 003227 183 KLRLSGI--RDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNM 240 (837)
Q Consensus 183 ~L~l~~~--~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~L~~L~ls~~~~i 240 (837)
.+-.++. ..+...++. ++.+|..||+.+|...+- ..+++|.+|++|++.+|+.-
T Consensus 485 tllas~nqi~~vd~~~l~----nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLK----NMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhccccccccChHHhh----hhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 3323322 113333333 457888888888743332 56788888888888887543
No 286
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.49 E-value=2.3 Score=47.11 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=66.2
Q ss_pred HhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhc
Q 003227 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (837)
Q Consensus 377 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (837)
.+.++..++.+..+.|..+|.+|+..|-.+|.++.+. ...+.+ .|+++|.++++.....+-.+|..+.
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~-------v~kvaD-----vL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH-------VSKVAD-----VLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T--------HHHHHH-----HHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH-------HhHHHH-----HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999876655 334544 8999999998887777777777766
Q ss_pred c-ChHHHHHHHHcCCHHHHHHHHh---cCCHHHHHHHHHHHH
Q 003227 457 V-NAKVAKAVAEEGGINILAVLAR---SMNRLVAEEAAGGLW 494 (837)
Q Consensus 457 ~-~~~~~~~i~~~g~i~~L~~lL~---~~~~~~~~~a~~~L~ 494 (837)
. |+. +.+..+...+. .+++.+++.++..|.
T Consensus 125 ~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 125 KQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred hcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 5 542 13555555554 578889999887774
No 287
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.08 E-value=43 Score=37.49 Aligned_cols=175 Identities=19% Similarity=0.130 Sum_probs=99.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhh
Q 003227 432 LLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADA 509 (837)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~ 509 (837)
.++...+ +++..+..|+..+..... -|+..+. ++..++.++.+++..||..|+..|..++.+ ++....++
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-- 98 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-- 98 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH--
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH--
Confidence 3444444 578899999999988877 4665554 688999999999999999999999999975 45555554
Q ss_pred CCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCC
Q 003227 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR---SCKFEGVQEQAARALANLAAHG 586 (837)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~ 586 (837)
..|+.+|. ++++.-...+-.+|..+...+ -.+.+..+...+. .+ ++.+++.++..|..-...-
T Consensus 99 ---DvL~QlL~---tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~-de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 99 ---DVLVQLLQ---TDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSG-DEQVRERALKFLREKLKPL 164 (556)
T ss_dssp ---HHHHHHTT------HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS--HHHHHHHHHHHHHHGGGS
T ss_pred ---HHHHHHHh---cccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccC-chHHHHHHHHHHHHHHhhC
Confidence 46888885 355555555555555554311 1234555666555 44 4778888888775543310
Q ss_pred CCCCccc-chhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcC
Q 003227 587 DSNSNNS-AVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSF 629 (837)
Q Consensus 587 ~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~ 629 (837)
. ..... ..=.+.-++..+-..|.+-..+=-......|..+..
T Consensus 165 ~-~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 165 K-PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp --TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred c-HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 0 00000 000122344455566665343333445566666655
No 288
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=88.77 E-value=28 Score=35.00 Aligned_cols=161 Identities=17% Similarity=0.024 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhhccCc--------cchHHHHhhCCHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhhcCCCchHHHH
Q 003227 484 LVAEEAAGGLWNLSVGE--------EHKGAIADAGGVKALVDLIFKWSSGG----DGVLERAAGALANLAADDKCSMEVA 551 (837)
Q Consensus 484 ~~~~~a~~~L~~l~~~~--------~~~~~l~~~g~i~~L~~lL~~~~~~~----~~~~~~a~~~L~~l~~~~~~~~~l~ 551 (837)
...+.+...|..++..+ +.+-.+.-.+.+|.++..+.+ ++ ......++..|..++.....
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~---~~~i~~~~~~~~~A~~La~~a~~~~~----- 148 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDD---PNPIQPDQECIEIAEALAQVAEAQGL----- 148 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcc---cccccccHHHHHHHHHHHHHHHhCCC-----
Confidence 34456666777766522 234444444456666666643 33 23445666788887743222
Q ss_pred hcCcHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhc
Q 003227 552 LAGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLS 628 (837)
Q Consensus 552 ~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls 628 (837)
+.+..++..+..+. ..+....++..|+.--. ++ .+...+..++.+|..+.+.++..+..+|..+-
T Consensus 149 --~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-----P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll 216 (262)
T PF14225_consen 149 --PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-----PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLL 216 (262)
T ss_pred --ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-----ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 22333333333222 23444555555554332 11 13467788999999999999999999999987
Q ss_pred CChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 003227 629 FDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGL 671 (837)
Q Consensus 629 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l 671 (837)
.+-+.+.. ...+.+.++++++++ +.-.+|+.+|-+.
T Consensus 217 ~~~d~~~~-~~~dlispllrlL~t------~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 217 PHVDMRSP-HGADLISPLLRLLQT------DLWMEALEVLDEI 252 (262)
T ss_pred ccccCCCC-cchHHHHHHHHHhCC------ccHHHHHHHHHHH
Confidence 77444333 444579999999986 3455677776554
No 289
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.68 E-value=23 Score=37.90 Aligned_cols=145 Identities=14% Similarity=0.004 Sum_probs=93.7
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHH-HHhhcCChhh
Q 003227 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGA-LWNLSFDDRN 633 (837)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~-L~~Ls~~~~~ 633 (837)
.+..+++.+.+..++..+..|.++|..++... ..+..=..+-++..+++.-.+.++++...|... +.-++.+.+.
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q----~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ----PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhc----hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 35667788887666888899999999999842 111111123455666666666666665555544 5556666554
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchh-hhhccCChHHHHHHhccCCHHHHHHHHHHHHHH
Q 003227 634 REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCI-AIGREGGVAPLIALARSEAEDVHETAAGALWNL 712 (837)
Q Consensus 634 ~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~-~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l 712 (837)
+ .|..+..++.. .+...-..++..+..+...-..-. ...-....|.+++...+.+..||..|+.+|..|
T Consensus 406 ~-------~I~~i~~~Ilt---~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 406 Q-------CIVNISPLILT---ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred h-------HHHHHhhHHhc---CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 4 24455566655 666666677777777764311111 111234788899999999999999999998877
Q ss_pred c
Q 003227 713 A 713 (837)
Q Consensus 713 ~ 713 (837)
.
T Consensus 476 v 476 (516)
T KOG2956|consen 476 V 476 (516)
T ss_pred H
Confidence 6
No 290
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.50 E-value=1.8 Score=49.50 Aligned_cols=150 Identities=13% Similarity=0.021 Sum_probs=98.4
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHH--cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCcc
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAA--AGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA 676 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~--~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~ 676 (837)
..++|.+++.....+...+-.-..+|.++-.+-+- +.+.. ....+.|++.|.- ++..+|..+..++-.+.....
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~---~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSM---PDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCC---CccchhhhHhhhhhHHHHhcc
Confidence 35678888888766666777777888876655333 22222 2356777777776 888898888888766553211
Q ss_pred chhhhhccCChHHHHHHhccCC---HHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHH
Q 003227 677 NCIAIGREGGVAPLIALARSEA---EDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 752 (837)
Q Consensus 677 ~~~~l~~~~~i~~L~~lL~s~~---~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~ 752 (837)
.-..-.-...+|.++.+=.+.+ ..||+.|+.+|..|.. -|...-.-.+..++..|+..|.++. ..+|..|..+=.
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRKEAVDTRQ 1020 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHHHHHHHhh
Confidence 1000111224566666655555 5689999999999998 5555444455667778999998765 778998887644
Q ss_pred H
Q 003227 753 Y 753 (837)
Q Consensus 753 ~ 753 (837)
+
T Consensus 1021 ~ 1021 (1030)
T KOG1967|consen 1021 N 1021 (1030)
T ss_pred h
Confidence 4
No 291
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.72 E-value=2.5 Score=39.88 Aligned_cols=150 Identities=15% Similarity=0.007 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHH
Q 003227 529 VLERAAGALANLAADDKCSMEVALAGGVHALVMLARS----CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (837)
Q Consensus 529 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~ 604 (837)
-..+|+..|.-++++++.+..+.++..--.+..++.. ...+..+..+.+++..+...+ .++....+...+++|.
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNd--sq~vi~fLltTeivPL 193 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKND--SQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCC--CHHHHHHHHhhhHHHH
Confidence 4557888888899999999888888765445555542 223567778999999998865 4455566678899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHc----C----CHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCcc
Q 003227 605 LVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA----G----GVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA 676 (837)
Q Consensus 605 L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~----g----~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~ 676 (837)
+++.+..+++--+.-|+.++..+-.++..-+++.+. - .+..++.-+-+ .++..+-..|.++-..++.++.
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs--~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVS--LGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHheeecCCHh
Confidence 999999888888888888888777766554444331 1 22223332322 3666677777777777777766
Q ss_pred chhhhh
Q 003227 677 NCIAIG 682 (837)
Q Consensus 677 ~~~~l~ 682 (837)
.|..+.
T Consensus 272 aR~lL~ 277 (315)
T COG5209 272 ARALLS 277 (315)
T ss_pred HHHHHh
Confidence 655443
No 292
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.46 E-value=5.1 Score=47.44 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=105.9
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CC
Q 003227 471 INILAVLARS----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DK 545 (837)
Q Consensus 471 i~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~ 545 (837)
.|.++++++. .+|+++.+|.-+|+.+..-+ ..+++. .+|.|+..+. .++++.++.+++-+++.++.. +.
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fces-~l~llftime--ksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCES-HLPLLFTIME--KSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHHH-HHHHHHHHHh--cCCCceeeecchheccchhhhccc
Confidence 5556666643 58999999999999987532 122233 5888999997 578899999999999999864 22
Q ss_pred chHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHH
Q 003227 546 CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALW 625 (837)
Q Consensus 546 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 625 (837)
.-+. .-+.|...+++.+ +.+++.|..+|.+|... .++.-.|.+.....++.++++.++.-|-.-..
T Consensus 995 lie~-----~T~~Ly~rL~D~~-~~vRkta~lvlshLILn--------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDES-PSVRKTALLVLSHLILN--------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred ccch-----hhHHHHHHhcCcc-HHHHHHHHHHHHHHHHh--------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 2221 2456778888876 99999999999999984 34455788999999999999999988886666
Q ss_pred hhcCC
Q 003227 626 NLSFD 630 (837)
Q Consensus 626 ~Ls~~ 630 (837)
.|+..
T Consensus 1061 Els~k 1065 (1251)
T KOG0414|consen 1061 ELSSK 1065 (1251)
T ss_pred Hhhhc
Confidence 66554
No 293
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.08 E-value=20 Score=41.96 Aligned_cols=277 Identities=18% Similarity=0.199 Sum_probs=151.1
Q ss_pred HhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc
Q 003227 402 GLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS 480 (837)
Q Consensus 402 ~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~ 480 (837)
+|..+...+.+| ...+.+..+++.++.++ -+++-|..-++++..+.. ++.. +...-+..++..|++
T Consensus 665 cLisllKnnteN-------qklFreanGvklilpfl--indehRSslLrivscLitvdpkq----vhhqelmalVdtLks 731 (2799)
T KOG1788|consen 665 CLISLLKNNTEN-------QKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKS 731 (2799)
T ss_pred HHHHHHhccchh-------hHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHh
Confidence 444444444444 34567777777777766 334455555666655544 3320 011124566777766
Q ss_pred C------------CHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhC------CCCH-HHHHHHHHHHH--
Q 003227 481 M------------NRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWS------SGGD-GVLERAAGALA-- 538 (837)
Q Consensus 481 ~------------~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~------~~~~-~~~~~a~~~L~-- 538 (837)
+ ..........++|.+.. +-..+..+.+.+|...|...|..+. +..+ -+...-...|.
T Consensus 732 gmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrl 811 (2799)
T KOG1788|consen 732 GMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRL 811 (2799)
T ss_pred cceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHH
Confidence 2 12345566778888875 3478888999999999888775422 1111 11111112221
Q ss_pred -Hhh--cCCCchHHHHhcCcHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCC
Q 003227 539 -NLA--ADDKCSMEVALAGGVHALVMLARSCK--FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (837)
Q Consensus 539 -~l~--~~~~~~~~l~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 613 (837)
.++ .++.++..+-..=.-+.+..+|.... --+..+..+..|..++. +.+..+.
T Consensus 812 fTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElal----------------------evlvppf 869 (2799)
T KOG1788|consen 812 FTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELAL----------------------EVLVPPF 869 (2799)
T ss_pred HHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHH----------------------HhhCCch
Confidence 222 23444433322222233444443221 00111122222222222 1111111
Q ss_pred HHHHHHHHHHHHhhcC---------C--hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-Cccchhhh
Q 003227 614 EGVRQEAAGALWNLSF---------D--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAI 681 (837)
Q Consensus 614 ~~~~~~a~~~L~~Ls~---------~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l 681 (837)
-.--..|+..+..+-. . .+..+.+...|++..+++.+-. ..+.++.+-+..+..++. ++.++..+
T Consensus 870 LtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLl---nypK~qlefl~lleSlaRaspfnaell 946 (2799)
T KOG1788|consen 870 LTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLL---NYPKLQLEFLNLLESLARASPFNAELL 946 (2799)
T ss_pred hhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHh---hChHHHHHHHHHHHHHhhcCCCchhhh
Confidence 1111223333322211 1 2347788899999999999887 888999999999988885 57777777
Q ss_pred hccCChHHHHHHh---ccCCHHHHHHHHHHHHHHcCCc
Q 003227 682 GREGGVAPLIALA---RSEAEDVHETAAGALWNLAFNP 716 (837)
Q Consensus 682 ~~~~~i~~L~~lL---~s~~~~v~~~a~~~L~~l~~~~ 716 (837)
-..|+++.|++++ .+++.....++..++.-|+..+
T Consensus 947 tS~gcvellleIiypflsgsspfLshalkIvemLgayr 984 (2799)
T KOG1788|consen 947 TSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAYR 984 (2799)
T ss_pred hcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhcc
Confidence 8889999988887 3566777777777777777643
No 294
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=86.84 E-value=3.3 Score=39.48 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=63.5
Q ss_pred hhHHHHHHhCcHHHHHHHHhc---------CChhHHHHHHHHHHHhccChHHHHHHHHcC-CHHHHHHHHhcCCHHHHHH
Q 003227 419 GRAEAVMKDGGIRLLLDLAKS---------WREGLQSEAAKAIANLSVNAKVAKAVAEEG-GINILAVLARSMNRLVAEE 488 (837)
Q Consensus 419 ~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~~~~ 488 (837)
.....+++.||+..|+..|.. .+...+..++.++..+..+......+.... ++..++..|.+++..++..
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 456788899999999998874 244678899999999999888777777754 4999999999999999999
Q ss_pred HHHHHHhhc
Q 003227 489 AAGGLWNLS 497 (837)
Q Consensus 489 a~~~L~~l~ 497 (837)
++.+|..++
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 295
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=85.96 E-value=34 Score=34.64 Aligned_cols=205 Identities=13% Similarity=0.064 Sum_probs=133.7
Q ss_pred HHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHH---HHHHHcCCHHHHHHHHhc-C-CHHHHHHHHHHHHh
Q 003227 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVA---KAVAEEGGINILAVLARS-M-NRLVAEEAAGGLWN 495 (837)
Q Consensus 422 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~---~~i~~~g~i~~L~~lL~~-~-~~~~~~~a~~~L~~ 495 (837)
+.+.++|.+..++..+...+-+.+..++.+..++-. +-..+ ...... -.+.+..+++. . .+++.-.+...|..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 468889999999999999888889888888888764 11111 111111 23333344433 3 36676667777777
Q ss_pred hccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchHHHHhcCc---HHH-HHHHHhcCCCHH
Q 003227 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGG---VHA-LVMLARSCKFEG 570 (837)
Q Consensus 496 l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~---i~~-L~~ll~~~~~~~ 570 (837)
....+...+.+.+..........++- ++=++...|..+...+.... ....++..... .+. --.++++++ --
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~---p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N-yv 227 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQL---PNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN-YV 227 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhc---cchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc-ee
Confidence 77777777777777777777777753 33356666776666665432 22233333322 233 444556554 56
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh
Q 003227 571 VQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD 631 (837)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~ 631 (837)
.++.+...+..+-............+.+..-+..++.+|+++...+|..|-...+-...++
T Consensus 228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 6788888888887753333333334446678889999999999999999998888877764
No 296
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.79 E-value=38 Score=36.31 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCc
Q 003227 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN 591 (837)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 591 (837)
+..+++.|. .+.++..++.|+++|..++.+...+-.=...-+|..+++.-.+..+..+..++-.++.-++.+ .+.
T Consensus 331 L~~l~EvL~--d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~---~P~ 405 (516)
T KOG2956|consen 331 LLLLLEVLS--DSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH---LPL 405 (516)
T ss_pred HHHHHHHHc--cchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh---Cch
Confidence 445667775 346788899999999999986543311111125667777777766444444444455566654 221
Q ss_pred ccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChh--hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 003227 592 NSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALW 669 (837)
Q Consensus 592 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~ 669 (837)
..|.-+..++...|...--.++..+..+...-. .-..++ ....|.+++.-.+ .+..||..|+.+|.
T Consensus 406 --------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S---~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 406 --------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDS---TSSTVRKTAVFCLV 473 (516)
T ss_pred --------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcC---chHHhhhhHHHhHH
Confidence 223334444444555555556656666655411 111111 2466777777666 88999999999997
Q ss_pred hc
Q 003227 670 GL 671 (837)
Q Consensus 670 ~l 671 (837)
.+
T Consensus 474 am 475 (516)
T KOG2956|consen 474 AM 475 (516)
T ss_pred HH
Confidence 74
No 297
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.15 E-value=25 Score=39.38 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=92.4
Q ss_pred CChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHH
Q 003227 440 WREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (837)
Q Consensus 440 ~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ 517 (837)
+|+.+|..|.-+|..+-. ..+.+.. -+|.++..+. +++|.++..|+-.|+.++-.-. ..++. .-..|.+
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN---~~~de-~t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN---TTADE-HTHYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehh---hhhHH-HHHHHHH
Confidence 689999999999988654 4444432 4788998886 7899999999999888774211 11111 1234555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 518 lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
-| .+.+..+++.++.++.+|.-....+ -.|..+.++..|.+++ .++...|-..+..++..
T Consensus 979 rL---~De~~~V~rtclmti~fLilagq~K----VKGqlg~ma~~L~ded-a~Isdmar~fft~~a~K 1038 (1128)
T COG5098 979 RL---GDEDADVRRTCLMTIHFLILAGQLK----VKGQLGKMALLLTDED-AEISDMARHFFTQIAKK 1038 (1128)
T ss_pred Hh---cchhhHHHHHHHHHHHHHHHcccee----eccchhhhHhhccCCc-chHHHHHHHHHHHHHhc
Confidence 55 6688899999999999886433222 2467788888888875 78888888888888864
No 298
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=85.04 E-value=15 Score=41.54 Aligned_cols=168 Identities=14% Similarity=0.057 Sum_probs=101.7
Q ss_pred HHhCcHHHHHHHHhcCChhHHHHHHHHHHHh------ccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 003227 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANL------SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 425 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l------~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~ 498 (837)
.....+|.|...++.. .-.+..+.++.++ ...++..+ ..++.|..-+++.+..+|+.++..+-..+.
T Consensus 346 ~~~~~~p~l~pi~~~~--~~~~~~l~i~e~mdlL~~Kt~~e~~~~-----~IlplL~~S~~~~~~~iQ~~~L~~lptv~e 418 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSAS--DPKQALLFILENMDLLKEKTPPEEVKE-----KILPLLYRSLEDSDVQIQELALQILPTVAE 418 (700)
T ss_pred hhhhhhHHHHHHhccC--CcccchhhHHhhHHHHHhhCChHHHHH-----HHHHHHHHHhcCcchhhHHHHHHhhhHHHH
Confidence 3445567777777642 1222223333333 22333333 356788888889999999999999988886
Q ss_pred CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhc--CCCHHHHHHHH
Q 003227 499 GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS--CKFEGVQEQAA 576 (837)
Q Consensus 499 ~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~--~~~~~~~~~a~ 576 (837)
.=+ -..+..-.+|.+-.+.. ...+..++.+++.++..+. +.+-...+++.+..+++. ..++.+.....
T Consensus 419 ~iD--~~~vk~~ilP~l~~l~~--~tt~~~vkvn~L~c~~~l~------q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~ 488 (700)
T KOG2137|consen 419 SID--VPFVKQAILPRLKNLAF--KTTNLYVKVNVLPCLAGLI------QRLDKAAVLDELLPILKCIKTRDPAIVMGFL 488 (700)
T ss_pred hcc--HHHHHHHHHHHhhcchh--cccchHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHH
Confidence 432 33344445666666632 5678889999999999887 222233344444444442 23478888888
Q ss_pred HHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCC
Q 003227 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (837)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 613 (837)
.+..++... ......+....++|.++.+...+.
T Consensus 489 ~i~~~l~~~----~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 489 RIYEALALI----IYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHHhh----cccceeeehhhhhhhhhhhhhccc
Confidence 888887763 222234445667777776655443
No 299
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=84.89 E-value=7.7 Score=36.88 Aligned_cols=108 Identities=17% Similarity=0.069 Sum_probs=73.6
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHH-hcc-ChHHHHHHHHcCCHHHHHHHHhc---------CCHHHHHHHHHHHHhhc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIAN-LSV-NAKVAKAVAEEGGINILAVLARS---------MNRLVAEEAAGGLWNLS 497 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~-l~~-~~~~~~~i~~~g~i~~L~~lL~~---------~~~~~~~~a~~~L~~l~ 497 (837)
..+..+..+.+..... ..+..|.- |-. ..+.-+.|++.||+..|+++|.. .+......++.+|..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3445666666543322 22222222 222 33567888899999999998853 35578889999999999
Q ss_pred cCccchHHHHh-hCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 003227 498 VGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (837)
Q Consensus 498 ~~~~~~~~l~~-~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~ 541 (837)
.+......+.. .+++..++..+ .+.+..++..++.+|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L---~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSL---DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT-----TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHH---CCCCHHHHHHHHHHHHHHH
Confidence 88877766665 56788888888 5688999999999998876
No 300
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=83.78 E-value=4.2 Score=41.45 Aligned_cols=159 Identities=17% Similarity=0.077 Sum_probs=103.0
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcC--CHHHHHHHHhhc-CCCCHHHHHHHHHHHHhcccCccc
Q 003227 601 ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAG--GVEALVVLAQSC-SNASPGLQERAAGALWGLSVSEAN 677 (837)
Q Consensus 601 ~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g--~i~~L~~ll~~~-~~~~~~v~~~A~~~L~~l~~~~~~ 677 (837)
....+...+...+++-+-.++-.++-++.++.....+...+ ....+..++... .+..+..+.-++++++|+-.++..
T Consensus 64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 64 WLILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 34556667777777778888888988888877766665543 245555555441 136788999999999999999888
Q ss_pred hhhhhccC--ChHHHHHHhccC----CHHHHHHHHHHHHHHcCCc-ccH-HHHHHcCCHHHHHHH-HhcCCcHHHHHHHH
Q 003227 678 CIAIGREG--GVAPLIALARSE----AEDVHETAAGALWNLAFNP-GNA-LRIVEEGGVPALVHL-CSSSGSKMARFMAA 748 (837)
Q Consensus 678 ~~~l~~~~--~i~~L~~lL~s~----~~~v~~~a~~~L~~l~~~~-~~~-~~i~~~~~i~~L~~l-l~~~~~~~~~~~a~ 748 (837)
+..+.+.. .+...+..+.+. +..++..++..+.|++..- ..+ ..=.+...+..+++. .....++++...+.
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 88777653 344444434333 6889999999999997511 000 000011123455553 33334688999999
Q ss_pred HHHHHhhCCCC
Q 003227 749 LALAYMFDGRM 759 (837)
Q Consensus 749 ~aL~~l~~~~~ 759 (837)
.||+++.....
T Consensus 224 vAlGtL~~~~~ 234 (268)
T PF08324_consen 224 VALGTLLSSSD 234 (268)
T ss_dssp HHHHHHHCCSH
T ss_pred HHHHHHhccCh
Confidence 99999995543
No 301
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=83.74 E-value=62 Score=34.08 Aligned_cols=155 Identities=13% Similarity=0.015 Sum_probs=93.5
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHh--c--------CCHHHHHHHHHHHHhhccCc
Q 003227 432 LLLDLAKSWR-EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR--S--------MNRLVAEEAAGGLWNLSVGE 500 (837)
Q Consensus 432 ~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~--~--------~~~~~~~~a~~~L~~l~~~~ 500 (837)
.+...|..+. ...+..++.++.-++.+.+.-+-+....-++.|+.+.+ . .+..+...+..+|+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 5677777765 45566777888878776544333333333445544432 1 24567788999999999765
Q ss_pred -cchHHHHhhCCHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhhc-CCCch-HHHHhcCcHHHHHHHHhcCC--------
Q 003227 501 -EHKGAIADAGGVKALVDLIFKWS--SGGDGVLERAAGALANLAA-DDKCS-MEVALAGGVHALVMLARSCK-------- 567 (837)
Q Consensus 501 -~~~~~l~~~g~i~~L~~lL~~~~--~~~~~~~~~a~~~L~~l~~-~~~~~-~~l~~~g~i~~L~~ll~~~~-------- 567 (837)
..+....+......+++.+.... +...++...-++.|.-++. .++.| +.+++.++++.+.+++.+.-
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 67777777766666666553211 1122344444555555554 44566 44566699999999987531
Q ss_pred C------HHHHHHHHHHHHHHhcCC
Q 003227 568 F------EGVQEQAARALANLAAHG 586 (837)
Q Consensus 568 ~------~~~~~~a~~~L~~l~~~~ 586 (837)
+ ......++.++.|+..+.
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeecc
Confidence 0 123346677777777653
No 302
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=82.38 E-value=29 Score=34.94 Aligned_cols=223 Identities=14% Similarity=0.018 Sum_probs=120.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHh
Q 003227 473 ILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL 552 (837)
Q Consensus 473 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~ 552 (837)
.|-..|.++++.+|..|+..|..+...=. .......-+..|+++..+ .-.+......++..+..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp--~~~L~~~ev~~L~~F~~~-rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLP--PDFLSRQEVQVLLDFFCS-RLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCC--HhhccHHHHHHHHHHHHH-HhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 34456778899999999988887764211 111222235667766654 2245555555677777776543332222 0
Q ss_pred cCcHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC-CCHHHHHHHHHHHHhhcCC
Q 003227 553 AGGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS-PHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 553 ~g~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~ 630 (837)
...+..+.+...- .-....|..+...+..+.... ... ..-...+.+..+++.+.. +||.....+-..+..+...
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~-l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REA-LQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHH-HHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 1122222221111 112456677778888777631 100 011234677888888765 4888777776666665544
Q ss_pred hhhHHHHHHcCCHHHHHHHHhh-------cCCCCH-H-HHHHHHHHHHh-cccCccchhhhhccCChHHHHHHhccCCHH
Q 003227 631 DRNREAIAAAGGVEALVVLAQS-------CSNASP-G-LQERAAGALWG-LSVSEANCIAIGREGGVAPLIALARSEAED 700 (837)
Q Consensus 631 ~~~~~~l~~~g~i~~L~~ll~~-------~~~~~~-~-v~~~A~~~L~~-l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~ 700 (837)
-+. ....+.+.+.+.. .+.+++ . .++.-..+|.+ ++.++.. ..-++|.|++-|.++.+.
T Consensus 155 ~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 155 FDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPS 223 (262)
T ss_pred ccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcH
Confidence 221 1223333333322 111222 1 22222223333 2333322 234789999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 003227 701 VHETAAGALWNLAF 714 (837)
Q Consensus 701 v~~~a~~~L~~l~~ 714 (837)
++.-++.+|.....
T Consensus 224 ~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 224 VKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 303
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=82.06 E-value=4.8 Score=38.89 Aligned_cols=96 Identities=21% Similarity=0.113 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcccCccchhhhhccCChH-------HHHHHh-ccCCHHHHHHHHHHHHHHcCCccc--HHHHHHcCC
Q 003227 658 PGLQERAAGALWGLSVSEANCIAIGREGGVA-------PLIALA-RSEAEDVHETAAGALWNLAFNPGN--ALRIVEEGG 727 (837)
Q Consensus 658 ~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~-------~L~~lL-~s~~~~v~~~a~~~L~~l~~~~~~--~~~i~~~~~ 727 (837)
-.-|..|+.+|++++..+.|-..+...+... .|++++ ..+++..|+.|+..|.+|+..... +..-.+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4568899999999998777766666655443 344444 357788999999999999984433 334446788
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH
Q 003227 728 VPALVHLCSSSGSKMARFMAALALAY 753 (837)
Q Consensus 728 i~~L~~ll~~~~~~~~~~~a~~aL~~ 753 (837)
+..|+.++.+......+..-...+.+
T Consensus 218 i~~Li~FiE~a~~~~~~~~~q~g~~~ 243 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAHQVASQHGMQA 243 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999887533333333444555
No 304
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=82.04 E-value=3.7 Score=39.66 Aligned_cols=82 Identities=23% Similarity=0.168 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhCCH-------HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-hHHHH-hcC
Q 003227 484 LVAEEAAGGLWNLSVGEEHKGAIADAGGV-------KALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVA-LAG 554 (837)
Q Consensus 484 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i-------~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~-~~g 554 (837)
.-|+.|+.+|++|+-.+.|...+...+-. ..|++++. ..++...++.|+.+|.+|+..++. ...+. +.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~--~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLG--MREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 45789999999999988888777766653 33444443 456788999999999999996543 33444 448
Q ss_pred cHHHHHHHHhcCC
Q 003227 555 GVHALVMLARSCK 567 (837)
Q Consensus 555 ~i~~L~~ll~~~~ 567 (837)
+|..|+.++++..
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998654
No 305
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.97 E-value=56 Score=32.34 Aligned_cols=179 Identities=18% Similarity=0.042 Sum_probs=99.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHH
Q 003227 557 HALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREA 636 (837)
Q Consensus 557 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 636 (837)
+.++.-+....+++.+...+.+|..++.++. . ...-++..|..+...+..+.+.-+...+..+....+..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~---~-----~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN---V-----CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc---c-----chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-
Confidence 4444445556668999999999999998630 1 112345566666666666665556666665554322110
Q ss_pred HHHcCCHHHHHHH--Hh-----hcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHh-ccCCHHHHHHHHHH
Q 003227 637 IAAAGGVEALVVL--AQ-----SCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA-RSEAEDVHETAAGA 708 (837)
Q Consensus 637 l~~~g~i~~L~~l--l~-----~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL-~s~~~~v~~~a~~~ 708 (837)
+.++.++.. ++ ...+...+.....+..+..++...+. .-...++.+...+ ++.++.++..++.+
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 223333333 01 11234445555556677777754222 1123466788888 78889999999999
Q ss_pred HHHHcCCcccHHHHHH-cCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 709 LWNLAFNPGNALRIVE-EGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 709 L~~l~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
|..++. ..+++ ......+..-+..+..+.+....+.-++.+..+
T Consensus 146 l~~Lc~-----~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 146 LAPLCE-----AEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred HHHHHH-----HhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccc
Confidence 999993 22222 122334444455555565555444444444443
No 306
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=81.75 E-value=39 Score=39.32 Aligned_cols=202 Identities=20% Similarity=0.084 Sum_probs=104.1
Q ss_pred CHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCC
Q 003227 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARS---CKFEGVQEQAARALANLAAHG 586 (837)
Q Consensus 511 ~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~---~~~~~~~~~a~~~L~~l~~~~ 586 (837)
++..+.+++.. +.. .-..|...|..+.... ..-.. .+..+..++.. ...+.+...|+-++..+....
T Consensus 396 av~~i~~~I~~---~~~-~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 396 AVKFIKDLIKS---KKL-TDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHT---T-S--HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCC-CHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 45566677753 211 1223444455544322 11111 34445555543 223566667776766665421
Q ss_pred CCCC------cccchhhccchHHHHHHHcC----CCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCC
Q 003227 587 DSNS------NNSAVGQEAGALEALVQLTR----SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNA 656 (837)
Q Consensus 587 ~~~~------~~~~~~~~~~~i~~L~~lL~----~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~ 656 (837)
-... ...........++.+...+. ..+.+-+..++.+|+|+... ..++.|..++......
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhcccc
Confidence 1010 01122223455666666554 45677888899999998642 3577788887762245
Q ss_pred CHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhcc--CCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHH
Q 003227 657 SPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS--EAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHL 734 (837)
Q Consensus 657 ~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~l 734 (837)
+..+|..|+++|..++..... ...+.++.+..+ .+.++|.+|..+|... +|. ...+..+...
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~-------~~~l~~i~~~ 600 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMRC--NPS-------PSVLQRIAQS 600 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------------HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc--CCC-------HHHHHHHHHH
Confidence 789999999999987543211 135567777754 5678888887776652 232 1234566677
Q ss_pred HhcCCcHHHHHHH
Q 003227 735 CSSSGSKMARFMA 747 (837)
Q Consensus 735 l~~~~~~~~~~~a 747 (837)
+....+..|..-.
T Consensus 601 l~~E~~~QV~sfv 613 (618)
T PF01347_consen 601 LWNEPSNQVASFV 613 (618)
T ss_dssp HTT-S-HHHHHHH
T ss_pred HhhCchHHHHHHH
Confidence 7655555554433
No 307
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.48 E-value=30 Score=35.12 Aligned_cols=173 Identities=18% Similarity=0.058 Sum_probs=100.2
Q ss_pred HHHHHHHhhccCccchHHHHhhC--CHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCchHHHHhcC--cHHHHHHH
Q 003227 488 EAAGGLWNLSVGEEHKGAIADAG--GVKALVDLIFKW-SSGGDGVLERAAGALANLAADDKCSMEVALAG--GVHALVML 562 (837)
Q Consensus 488 ~a~~~L~~l~~~~~~~~~l~~~g--~i~~L~~lL~~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g--~i~~L~~l 562 (837)
-++..++-++.++.....+...+ ....+..++... ....+..+..+++++.|+-.++..+..+.+.. .+...+..
T Consensus 82 P~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~ 161 (268)
T PF08324_consen 82 PALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSS 161 (268)
T ss_dssp HHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHC
T ss_pred hHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHH
Confidence 34444444455555444444443 234455555431 22567788899999999999998888877663 34333333
Q ss_pred HhcCC---CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcC-C-CCHHHHHHHHHHHHhhcCChhhHHHH
Q 003227 563 ARSCK---FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR-S-PHEGVRQEAAGALWNLSFDDRNREAI 637 (837)
Q Consensus 563 l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~-~-~~~~~~~~a~~~L~~Ls~~~~~~~~l 637 (837)
+.... +..++..++..+.|++........ ..-.....+..+.+.+. . .++++...++.+|++|...++.....
T Consensus 162 ~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~--~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~ 239 (268)
T PF08324_consen 162 LLSSLLDSNKNVRIALATLLLNLSVLLHKNRS--DEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQL 239 (268)
T ss_dssp CCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS---CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHH
Confidence 33332 578899999999999764211110 01011234666666432 2 58999999999999998766555554
Q ss_pred HHc-CCHHHHHHHHhhcCCCCHHHHHHH
Q 003227 638 AAA-GGVEALVVLAQSCSNASPGLQERA 664 (837)
Q Consensus 638 ~~~-g~i~~L~~ll~~~~~~~~~v~~~A 664 (837)
... |+-..+...... ...+.+++-+
T Consensus 240 ~~~l~~~~~~~~~~~~--~~e~ri~~v~ 265 (268)
T PF08324_consen 240 AKSLDVKSVLSKKANK--SKEPRIKEVA 265 (268)
T ss_dssp CCCCTHHHHHHHHHHH--TTSHHHHHHH
T ss_pred HHHcChHHHHHHHHhc--ccchHHHHHh
Confidence 443 333333333222 3556665544
No 308
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.39 E-value=15 Score=40.12 Aligned_cols=105 Identities=18% Similarity=0.055 Sum_probs=73.2
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHH
Q 003227 641 GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNAL 720 (837)
Q Consensus 641 g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~ 720 (837)
|.+..+++-+.+ .+..||...+.+|+-++..-.--......|.+..|.+-+-+..+.|+..|..+|+.+-....+..
T Consensus 91 ~~~~h~lRg~es---kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 91 GTFYHLLRGTES---KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHhcccC---cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 355666666665 89999999999999987653222233445667777777777889999999999999866333321
Q ss_pred HHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHH
Q 003227 721 RIVEEGGVPALVHLCSSSGSKMARFMAALALA 752 (837)
Q Consensus 721 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~ 752 (837)
......|+.+++++.+..||..|..-+.
T Consensus 168 ----n~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 168 ----NRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred ----HHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 1223477888888878888877655433
No 309
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.36 E-value=7.7 Score=36.81 Aligned_cols=144 Identities=15% Similarity=0.048 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC-----CCHHHHHHHHHHHHhhcCChhh--HHHHHHcCCHH
Q 003227 572 QEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS-----PHEGVRQEAAGALWNLSFDDRN--REAIAAAGGVE 644 (837)
Q Consensus 572 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~--~~~l~~~g~i~ 644 (837)
...|...|..+++ .++.+..+.+..+.-.+...|.. +.+-+|..++++++.|..++.. ...+.....++
T Consensus 117 vcnaL~lLQclaS----hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 117 VCNALNLLQCLAS----HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred HHHHHHHHHHHhc----CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 4577788888888 46667777777766666666543 2456788899999999988433 55566678999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhh----ccCCh----HHHH-HHhccCCHHHHHHHHHHHHHHcCC
Q 003227 645 ALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIG----REGGV----APLI-ALARSEAEDVHETAAGALWNLAFN 715 (837)
Q Consensus 645 ~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~----~~~~i----~~L~-~lL~s~~~~v~~~a~~~L~~l~~~ 715 (837)
.+++++.. +++.-+.-|+.++..+-.++.+-+.+. ..-++ ..++ ++...+..+....++.+-.+|+.+
T Consensus 193 LcLrIme~---gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 193 LCLRIMEL---GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHHh---hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 99999987 888888888888888765544322222 21222 2222 223456677777888888888877
Q ss_pred cccHHHH
Q 003227 716 PGNALRI 722 (837)
Q Consensus 716 ~~~~~~i 722 (837)
|..|..+
T Consensus 270 p~aR~lL 276 (315)
T COG5209 270 PHARALL 276 (315)
T ss_pred HhHHHHH
Confidence 7666443
No 310
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=80.10 E-value=70 Score=32.26 Aligned_cols=213 Identities=15% Similarity=0.034 Sum_probs=123.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhccCccchHHHHhh
Q 003227 433 LLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (837)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~ 509 (837)
|=..|.++|+.+|..|+..|..+.. -+... ....-+..|++...+ .|......++.++..|.........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~---- 76 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE---- 76 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh----
Confidence 4456788999999999999988665 22111 122235667666543 4555555556666666643321111
Q ss_pred CCHHHHHHHHH-h--hCCCCHHHHHHHHHHHHHhhcCCCchHHHHh--cCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 510 GGVKALVDLIF-K--WSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 510 g~i~~L~~lL~-~--~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
....+++.+. . ..+.....|..+..++..+..+. ...+.+ .+.+..+++.+....||.-...+...+..+..
T Consensus 77 -~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 77 -SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred -hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1223333222 1 12233456777777887777542 233332 24678889999988889888888888888876
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCC--------C--CH--HHHHHHHHHHH-hhcCChhhHHHHHHcCCHHHHHHHHh
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRS--------P--HE--GVRQEAAGALW-NLSFDDRNREAIAAAGGVEALVVLAQ 651 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~--------~--~~--~~~~~a~~~L~-~Ls~~~~~~~~l~~~g~i~~L~~ll~ 651 (837)
.-+ . ....+.+...+.. + ++ -.++.-..+|. .++.++.-. .-+++.|++=|.
T Consensus 154 ~~~---------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~ 218 (262)
T PF14500_consen 154 EFD---------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLD 218 (262)
T ss_pred hcc---------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHc
Confidence 421 1 3444555555432 1 22 12333333343 345444322 236888888888
Q ss_pred hcCCCCHHHHHHHHHHHHhccc
Q 003227 652 SCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 652 ~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
+ ..+.++..++.+|..+..
T Consensus 219 s---~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 219 S---TSPSVKLDSLQTLKACIE 237 (262)
T ss_pred C---CCcHHHHHHHHHHHHHHH
Confidence 7 788899999999887654
No 311
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.03 E-value=2.9 Score=45.41 Aligned_cols=88 Identities=27% Similarity=0.322 Sum_probs=51.1
Q ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCC--CCChHHhh--CCCCCCEeeccCCCCCCH-----
Q 003227 172 KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL--NVDEVALG--NVLSVRFLSVAGTSNMKW----- 242 (837)
Q Consensus 172 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~--~~~~~~l~--~l~~L~~L~ls~~~~i~~----- 242 (837)
..+....|.+.+++|++++--.-+.+..+++..|+|.+|+|++|. .-++..+. ....|++|-+.||+-.+.
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 444556777777777776433445566677777888888888772 22223332 234577777777644332
Q ss_pred HHHHHHHhcCCCccEEE
Q 003227 243 GVVSQVWHKLPKLVGLD 259 (837)
Q Consensus 243 ~~l~~~~~~~~~L~~L~ 259 (837)
..+..+.+.+|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 22233445566666654
No 312
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.76 E-value=2.9 Score=25.33 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=11.3
Q ss_pred CCCEEEecCCCCCCHHHHHHHHh
Q 003227 180 KLKKLRLSGIRDICGDAINALAK 202 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~ 202 (837)
+|++|+|+++ .+++++...+++
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHHH
Confidence 4555555555 455555554443
No 313
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=79.22 E-value=1 Score=50.40 Aligned_cols=46 Identities=24% Similarity=0.475 Sum_probs=40.7
Q ss_pred CCCCCCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCccc
Q 003227 36 EVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWS 81 (837)
Q Consensus 36 ~~~~~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~ 81 (837)
..+.+..||.|+..+||.||+.++++.+++||+.|+.+......|.
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 3567899999999999999999999999999999999987766553
No 314
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=78.83 E-value=77 Score=35.71 Aligned_cols=164 Identities=16% Similarity=0.083 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHH
Q 003227 569 EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVV 648 (837)
Q Consensus 569 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ 648 (837)
.+.+-.|.-+|+-+..+...+......-.....+..++..+. .++.-+..++++|.|+-.++..++.+... ...+..
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~ 634 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESILD 634 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhh
Confidence 566677777777777653222222221112234445555554 45677888999999999997777766544 333333
Q ss_pred HHhhcC-CCCHHHHHHHHHHHHhcccC--ccchhhhhccCChHHHHHHhcc-----CCHHHHHHHHHHHHHHcCCcccHH
Q 003227 649 LAQSCS-NASPGLQERAAGALWGLSVS--EANCIAIGREGGVAPLIALARS-----EAEDVHETAAGALWNLAFNPGNAL 720 (837)
Q Consensus 649 ll~~~~-~~~~~v~~~A~~~L~~l~~~--~~~~~~l~~~~~i~~L~~lL~s-----~~~~v~~~a~~~L~~l~~~~~~~~ 720 (837)
.+.... ..+..++.+-+....|++.. ..+. +.++.+.+..++.. ++-+.....+.||.+|+..+....
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 222111 23455555544444455421 1111 14556665555532 233455667888899998888888
Q ss_pred HHHHcCCHHHHHHHHhcCC
Q 003227 721 RIVEEGGVPALVHLCSSSG 739 (837)
Q Consensus 721 ~i~~~~~i~~L~~ll~~~~ 739 (837)
++.+.-.+..+++-+.+..
T Consensus 711 ~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred HHHHhcCHHHHHHHHHHhc
Confidence 8888888888888887643
No 315
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.49 E-value=52 Score=40.35 Aligned_cols=220 Identities=15% Similarity=0.089 Sum_probs=106.6
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--cchHHHHhhCC-HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 003227 469 GGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIADAGG-VKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545 (837)
Q Consensus 469 g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~-i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~ 545 (837)
.+.+.+......--..++..+..++.+.+..+ .......+..+ +-....+.. +.....+++.....++.++...+.
T Consensus 796 naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~-~s~~~~evr~~sl~~l~silet~g 874 (1610)
T KOG1848|consen 796 NAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSD-NSSRGVEVRISSLEALVSILETVG 874 (1610)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHH-hcCccceeeHHHHHHHHHHHhccc
Confidence 34444444444434445555556666665533 22222233322 333333333 255667788888888888875432
Q ss_pred chHHHHhcCcHHHHHHHHhc----C--CCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC-CCHHHHH
Q 003227 546 CSMEVALAGGVHALVMLARS----C--KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS-PHEGVRQ 618 (837)
Q Consensus 546 ~~~~l~~~g~i~~L~~ll~~----~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~ 618 (837)
.. +. .| .+.+.+++++ + ....+.+.+-.+++-++.+. -+--..-.=.+.++.+....+. .|..+--
T Consensus 875 e~--ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDf---LqSLp~sci~~lidtl~~fs~QktdlNISl 947 (1610)
T KOG1848|consen 875 EH--LL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDF---LQSLPTSCILDLIDTLLVFSRQKTDLNISL 947 (1610)
T ss_pred hh--hc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcc---hhcCChHHHHHHHHHHHHHHhhhccccccH
Confidence 11 11 11 3444444432 1 12345556666666666532 0000000112445555555433 4667888
Q ss_pred HHHHHHHhhcCChhh-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccC
Q 003227 619 EAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSE 697 (837)
Q Consensus 619 ~a~~~L~~Ls~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~ 697 (837)
.|++.+|+++..-.+ ++-..+.+.-...++-+.+ ......+-.+++|++. +..|.++..+.
T Consensus 948 tAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s-s~~~~~~l~e~lwi~l-----------------l~~L~~~~~ds 1009 (1610)
T KOG1848|consen 948 TAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS-SMKSKEILPEVLWIML-----------------LVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc-cccchhhhhhHHHHHH-----------------HHHHHHHhccc
Confidence 888999988765333 2222222222223333332 2345556666666652 23344445555
Q ss_pred CHHHHHHHHHHHHHHcC
Q 003227 698 AEDVHETAAGALWNLAF 714 (837)
Q Consensus 698 ~~~v~~~a~~~L~~l~~ 714 (837)
..+||..|++++.++..
T Consensus 1010 r~eVRngAvqtlfri~~ 1026 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFN 1026 (1610)
T ss_pred hHHHhhhHHHHHHHHHh
Confidence 56666666666666644
No 316
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.41 E-value=4.2 Score=33.26 Aligned_cols=73 Identities=14% Similarity=0.004 Sum_probs=55.8
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcc
Q 003227 687 VAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDE 761 (837)
Q Consensus 687 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~ 761 (837)
++..+..+.++.+.+|..++..|.+|..... ....-..+.+..+...+.+++ +-+-..|..+|+.++...++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChHH
Confidence 4556677788899999999999999987655 222223455667777888765 779999999999999887753
No 317
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=78.38 E-value=43 Score=37.93 Aligned_cols=189 Identities=12% Similarity=0.036 Sum_probs=119.5
Q ss_pred HhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Q 003227 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 551 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
...+.++.+++++...+ ..+|..-+.-+-....+ ......+..++|.+..-+.+.++.+|+.++..+..|+.-
T Consensus 327 yq~~i~p~l~kLF~~~D-r~iR~~LL~~i~~~i~~------Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPD-RQIRLLLLQYIEKYIDH------LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccchhhhHHHHhcCcc-hHHHHHHHHhHHHHhhh------cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 45678999999999875 77776555544444332 223445678899999999999999999999999888765
Q ss_pred hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHH
Q 003227 631 DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALW 710 (837)
Q Consensus 631 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~ 710 (837)
-..+ ......++.+-++-. +.+..+|.+..-+|..++..-.. .....-.+.++.+.++++-...|.++..+++
T Consensus 400 L~~~--~Ln~Ellr~~ar~q~---d~~~~irtntticlgki~~~l~~--~~R~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 400 LSKR--NLNGELLRYLARLQP---DEHGGIRTNTTICLGKIAPHLAA--SVRKRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred hchh--hhcHHHHHHHHhhCc---cccCcccccceeeecccccccch--hhhccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 2222 111112222322222 36778888888888888754211 0111122334566777777788888888888
Q ss_pred HHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 711 NLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 711 ~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
.......... +....+|.++-+..+.+ +.+|..|..++..+-.
T Consensus 473 at~~~~~~~~--va~kIlp~l~pl~vd~e-~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 473 ATQEYFDQSE--VANKILPSLVPLTVDPE-KTVRDTAEKAIRQFLE 515 (690)
T ss_pred hcccccchhh--hhhhccccccccccCcc-cchhhHHHHHHHHHHh
Confidence 7765333221 12345666666666554 7788888887776644
No 318
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=77.54 E-value=64 Score=38.16 Aligned_cols=173 Identities=16% Similarity=0.062 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH-cCCCCHHHHHHHHHHHHhhcCCh--hhHHHHHHcCCHHH
Q 003227 569 EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL-TRSPHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEA 645 (837)
Q Consensus 569 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~~Ls~~~--~~~~~l~~~g~i~~ 645 (837)
..-+..|+..+.-..... .....-...+.+-.++.. +.+.+..+...|+..|..++..- ..+.+ ..+..+.
T Consensus 267 WK~R~Eale~l~~~l~e~----~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~--~~~v~p~ 340 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEA----KKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY--AKNVFPS 340 (815)
T ss_pred hHHHHHHHHHHHHHHhcc----ccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH--HHhhcch
Confidence 555667777777766532 101111123344444444 34557777888888888887652 22222 2346778
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC--CcccHHHHH
Q 003227 646 LVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF--NPGNALRIV 723 (837)
Q Consensus 646 L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~--~~~~~~~i~ 723 (837)
++.-+.. ....++..+..++-.++... .-....+.++.+++++++.++..+...+..... .+.....-.
T Consensus 341 lld~lke---kk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t 411 (815)
T KOG1820|consen 341 LLDRLKE---KKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKET 411 (815)
T ss_pred HHHHhhh---ccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhh
Confidence 8888876 77888888888877665421 112356778888999999999998877777654 222222222
Q ss_pred HcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 724 EEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 724 ~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
-.+.++.++...++.+ +.||..|..+++.+..-
T Consensus 412 ~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 412 VKTLVPHLIKHINDTD-KDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHHHhHHHhhhccCCc-HHHHHHHHHHHHHHHHH
Confidence 2345777777777665 88999999998887653
No 319
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.27 E-value=29 Score=31.95 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=72.9
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHH
Q 003227 430 IRLLLDLAKSW-REGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (837)
Q Consensus 430 i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 507 (837)
++.|+++|+.+ +..+|+.++++|+.+.. ||...+.+..... .-. -...+....... +.+.... ..-+...
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~~---l~~~~~~-~~~ee~y 83 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDIS---LPMMGIS-PSSEEYY 83 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhhH---HhhccCC-CchHHHH
Confidence 55788888875 68999999999999988 6643332221111 000 001111111111 1111111 1122223
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (837)
-..++..|+++|++ ..-..-...++.++.++......+..-.=...+|.++..++..+ +..++....-|..+.
T Consensus 84 ~~vvi~~L~~iL~D--~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~-~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRD--PSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP-DSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHH
Confidence 33366778888864 12223344566666666643222211111246888888888776 466666555555543
No 320
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.91 E-value=39 Score=39.82 Aligned_cols=278 Identities=17% Similarity=0.159 Sum_probs=147.7
Q ss_pred HHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc
Q 003227 360 ILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439 (837)
Q Consensus 360 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 439 (837)
.+..+...|.++...|....|+..++.++- +++-+..-.+.+..|...+... +...-+-.+|..|++
T Consensus 665 cLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkq-----------vhhqelmalVdtLks 731 (2799)
T KOG1788|consen 665 CLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQ-----------VHHQELMALVDTLKS 731 (2799)
T ss_pred HHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCccc-----------ccHHHHHHHHHHHHh
Confidence 456667788888888888888888888773 2233333344444433322221 111223467777877
Q ss_pred CC--------hh----HHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc----------CCHHHHHHHHHHHHhh
Q 003227 440 WR--------EG----LQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS----------MNRLVAEEAAGGLWNL 496 (837)
Q Consensus 440 ~~--------~~----~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~----------~~~~~~~~a~~~L~~l 496 (837)
+- -+ .......+++.+.. +...+..+.+.+|...|...|.. .+..+.-.-..+|..+
T Consensus 732 gmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrl 811 (2799)
T KOG1788|consen 732 GMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRL 811 (2799)
T ss_pred cceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHH
Confidence 31 12 23345556666665 67889999999998888877632 1222222222222222
Q ss_pred -----ccCccchHHHHhhCCHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCH
Q 003227 497 -----SVGEEHKGAIADAGGVKALVDLIFKWSSG--GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFE 569 (837)
Q Consensus 497 -----~~~~~~~~~l~~~g~i~~L~~lL~~~~~~--~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~ 569 (837)
+.++.|+..+-..-.-+.+..+|+. ++ -.+.-+++...|..++ ++. +..+ +-
T Consensus 812 fTlavcenasNrmklhtvITsqtftsLLre--sgllcvnler~viqlllEla--------------lev----lvpp-fL 870 (2799)
T KOG1788|consen 812 FTLAVCENASNRMKLHTVITSQTFTSLLRE--SGLLCVNLERHVIQLLLELA--------------LEV----LVPP-FL 870 (2799)
T ss_pred HHHHHhhcchhhhheeeeeeHHHHHHHHHH--hccceecchHHHHHHHHHHH--------------HHh----hCCc-hh
Confidence 1233444444333333444444432 11 0011111111111111 111 1111 01
Q ss_pred HHHHHHHHHHHHHhc--------CCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHc
Q 003227 570 GVQEQAARALANLAA--------HGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAA 640 (837)
Q Consensus 570 ~~~~~a~~~L~~l~~--------~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~ 640 (837)
..-..||..+-.+-. .+..+ ..+..+...|++..+++.+-...+.++..-+..+..++.. +.+++.....
T Consensus 871 tSEsaAcaeVfelednifavntPsGqfn-pdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~ 949 (2799)
T KOG1788|consen 871 TSESAACAEVFELEDNIFAVNTPSGQFN-PDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSA 949 (2799)
T ss_pred hhhHHHHHHHhhcccceeeeccCCCCcC-chHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcc
Confidence 111222222222211 11111 2334456789999999988778888888888888888876 6677777778
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 641 GGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 641 g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
|+++.|+++.....+++...-..|..++.-++
T Consensus 950 gcvellleIiypflsgsspfLshalkIvemLg 981 (2799)
T KOG1788|consen 950 GCVELLLEIIYPFLSGSSPFLSHALKIVEMLG 981 (2799)
T ss_pred cHHHHHHHHhhhhhcCCchHhhccHHHHHHHh
Confidence 99999998876533455556666666655555
No 321
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=76.75 E-value=62 Score=38.28 Aligned_cols=176 Identities=14% Similarity=0.042 Sum_probs=105.9
Q ss_pred HhcCCHHHHHHHHHHHHhhccCccchHHHHhhCC---HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcC
Q 003227 478 ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGG---VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAG 554 (837)
Q Consensus 478 L~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~---i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g 554 (837)
+.+.+-.-+..|+..+......+. .....+. +..++.... .+.+..+...++.+|..++..-..-..=...+
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~--kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRL--KDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhc--cCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 344555566666666666665433 1122222 333333333 45667788888888888886322111112235
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-h-h
Q 003227 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-D-R 632 (837)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~-~ 632 (837)
..+.++..+.+.. ..++..+..++..++.. . .-....+.++..++++++.++..+...+...... . .
T Consensus 337 v~p~lld~lkekk-~~l~d~l~~~~d~~~ns---~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 337 VFPSLLDRLKEKK-SELRDALLKALDAILNS---T-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred hcchHHHHhhhcc-HHHHHHHHHHHHHHHhc---c-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 6788888887765 66666666666655542 1 1245678889999999999999877777654443 2 1
Q ss_pred hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 633 NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 633 ~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
....-.-.+.++.++....+ .+.+||.+|..+++-+.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D---~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHIND---TDKDVRKAALEAVAAVM 442 (815)
T ss_pred CcchhhHHHHhHHHhhhccC---CcHHHHHHHHHHHHHHH
Confidence 11111112346666666655 89999999999987743
No 322
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=76.46 E-value=84 Score=31.13 Aligned_cols=140 Identities=19% Similarity=0.028 Sum_probs=80.6
Q ss_pred HHHHH-HHhcCChhHHHHHHHHHHHhccCh-HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHh
Q 003227 431 RLLLD-LAKSWREGLQSEAAKAIANLSVNA-KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (837)
Q Consensus 431 ~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~ 508 (837)
+.|+. +-+..+++.+...+.+|..++.++ .+...+ ++.+..+...+....+..+...+..+-...+-.-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34444 334478999999999999999865 333332 4555566666666665556666666554321110
Q ss_pred hCCHHHHHHH--HH---h--hCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003227 509 AGGVKALVDL--IF---K--WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (837)
Q Consensus 509 ~g~i~~L~~l--L~---~--~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (837)
+.+..++.. ++ . ..+...+.....+..+..++.....+ ....++.+..++...+++.++..++.+|..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 223333322 11 0 02223344455566777777633221 123467777788333347888899999999
Q ss_pred Hhc
Q 003227 582 LAA 584 (837)
Q Consensus 582 l~~ 584 (837)
++.
T Consensus 149 Lc~ 151 (234)
T PF12530_consen 149 LCE 151 (234)
T ss_pred HHH
Confidence 985
No 323
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.87 E-value=16 Score=40.85 Aligned_cols=187 Identities=15% Similarity=0.082 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHHHhhcC-ChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHH
Q 003227 612 PHEGVRQEAAGALWNLSF-DDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPL 690 (837)
Q Consensus 612 ~~~~~~~~a~~~L~~Ls~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L 690 (837)
.+++++.+|.-.|..+.. ..+.+ ..-+|.|+..+.. .++|.+|.+|+..|+.++..-.. +++. .-.-|
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek--~p~P~IR~NaVvglgD~~vcfN~---~~de-~t~yL 976 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEK--HPIPRIRANAVVGLGDFLVCFNT---TADE-HTHYL 976 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhh--CCCcceeccceeeccccceehhh---hhHH-HHHHH
Confidence 478888888777765432 22222 1247888888874 49999999999999988753211 1111 12335
Q ss_pred HHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcchh----hhc
Q 003227 691 IALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFA----LIG 766 (837)
Q Consensus 691 ~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~~----~i~ 766 (837)
.+-|.+.+..|++.|...+..|......+ -.|-++.+..+|.+++ ..+..+|-.-+..++......+. +..
T Consensus 977 yrrL~De~~~V~rtclmti~fLilagq~K----VKGqlg~ma~~L~ded-a~Isdmar~fft~~a~KdNt~yn~fidifs 1051 (1128)
T COG5098 977 YRRLGDEDADVRRTCLMTIHFLILAGQLK----VKGQLGKMALLLTDED-AEISDMARHFFTQIAKKDNTMYNGFIDIFS 1051 (1128)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHcccee----eccchhhhHhhccCCc-chHHHHHHHHHHHHHhcccchhhhhHHHHH
Confidence 56678889999999999999986432211 2366888888998876 67889999888888766553322 222
Q ss_pred cCccCcccccchhHHHHHHHHHHHHHHHhcCChh-HHHHHHhccchhhhHHHHHHh
Q 003227 767 TSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQ-AFATAAASSAPAALTQVTERA 821 (837)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~-~~~~~~~~~a~~~l~~~~~~~ 821 (837)
.+..+..... ...+.|.+|++..-+.+ -++.+.+..+...+.-.+|++
T Consensus 1052 ~ls~~ae~g~-------e~fk~II~FLt~fI~kerh~kql~E~L~~rl~rc~tq~q 1100 (1128)
T COG5098 1052 TLSSDAENGQ-------EPFKLIIGFLTDFISKERHQKQLKESLFLRLLRCNTQSQ 1100 (1128)
T ss_pred HcCchhhcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 2222211100 12445555544444333 555555655555555444443
No 324
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.70 E-value=24 Score=31.31 Aligned_cols=76 Identities=20% Similarity=0.089 Sum_probs=60.8
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh--hhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
..++..|.+-++++++.++..|+.+|-.+..+. .....+.....+..|+.++......++.|+..++..+..++..
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456788888899999999999999999988873 3466676667788888888752246889999999999998753
No 325
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=75.64 E-value=1.1 Score=39.04 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=17.7
Q ss_pred hCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCC
Q 003227 203 LCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTS 238 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~ 238 (837)
..|.++.|++++| .+.| +.+..++.|+.|++++|+
T Consensus 75 kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 75 KFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred ccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc
Confidence 3345555555555 3333 224555566666665553
No 326
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=75.40 E-value=1.1e+02 Score=32.11 Aligned_cols=158 Identities=13% Similarity=0.099 Sum_probs=108.9
Q ss_pred HHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch-HHHHHHHHcCC--HHHHHHHHhcC-----C--------HHHH
Q 003227 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA-KVAKAVAEEGG--INILAVLARSM-----N--------RLVA 486 (837)
Q Consensus 424 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~-~~~~~i~~~g~--i~~L~~lL~~~-----~--------~~~~ 486 (837)
+.+.. ++.+.+.|.+..+.+...+++.|..+.. +. .....+.+.-. .+.+.+++... . +.+|
T Consensus 53 iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 53 ILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 44433 7888999999988899999999999988 54 55555554433 56677776321 1 2778
Q ss_pred HHHHHHHHhhcc--CccchHHHHhhCC-HHHHHHHHHhhCCCCHHHHHHHHHHHHH-hhcCCCc----hHHHHhcCcHHH
Q 003227 487 EEAAGGLWNLSV--GEEHKGAIADAGG-VKALVDLIFKWSSGGDGVLERAAGALAN-LAADDKC----SMEVALAGGVHA 558 (837)
Q Consensus 487 ~~a~~~L~~l~~--~~~~~~~l~~~g~-i~~L~~lL~~~~~~~~~~~~~a~~~L~~-l~~~~~~----~~~l~~~g~i~~ 558 (837)
...+..+..+.. ++..+..+.+.+. +..+.+-| ..+++++....+.+|.. +..++.. +..+.....+..
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l---~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGL---RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcc---cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 777776666554 4466766666554 55555655 45888899999999985 5555443 445556677888
Q ss_pred HHHHHhcCCC---HHHHHHHHHHHHHHhcC
Q 003227 559 LVMLARSCKF---EGVQEQAARALANLAAH 585 (837)
Q Consensus 559 L~~ll~~~~~---~~~~~~a~~~L~~l~~~ 585 (837)
++.+...... ..+...+-..|..+|..
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 8887765542 27888888999998874
No 327
>PF13013 F-box-like_2: F-box-like domain
Probab=75.03 E-value=4.3 Score=34.25 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHHccCChHhHHHHHhhcH
Q 003227 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCR 68 (837)
Q Consensus 39 ~~~~LP~eil~~I~~~l~~~d~~~~~~v~~ 68 (837)
.+.+||+|++..||.+.+..+.......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999888887777776
No 328
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.97 E-value=1.5e+02 Score=33.75 Aligned_cols=176 Identities=11% Similarity=0.024 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCCch----HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchh
Q 003227 523 SSGGDGVLERAAGALANLAA--DDKCS----MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~--~~~~~----~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (837)
...|..++.+|+.++.++-- +++.. ..+++ .-...|..+|++.- +.++..|..-+..+.+. .+ ..+
T Consensus 184 ~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~-p~VRS~a~~gv~k~~s~---fW---e~i 255 (1005)
T KOG1949|consen 184 KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPY-PMVRSTAILGVCKITSK---FW---EMI 255 (1005)
T ss_pred ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH---HH---HHc
Confidence 45788999999999999874 55542 22322 34566788888775 88988887777776553 22 121
Q ss_pred hccchHHHHHHH----c-CCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 003227 597 QEAGALEALVQL----T-RSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGL 671 (837)
Q Consensus 597 ~~~~~i~~L~~l----L-~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l 671 (837)
-...+..++.- + .+...+||-.....|..+..++..-..+ +. +++.+-..|.+ .+..||.++...|..+
T Consensus 256 -P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e~-~Lpal~~~l~D---~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 -PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-EQ-LLPALRYSLHD---NSEKVRVAFVDMLLKI 329 (1005)
T ss_pred -CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-HH-HHHhcchhhhc---cchhHHHHHHHHHHHH
Confidence 12223333322 2 2235578888888887777765443322 22 35566666666 8899999999988776
Q ss_pred ccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 672 SVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 672 ~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
-.... ..+.+--.+..++.-|.+++.++.+..+..+.+.+.
T Consensus 330 k~vra--~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 330 KAVRA--AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred Hhhhh--hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 42211 123333345566666766666666666666666654
No 329
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=74.84 E-value=12 Score=33.71 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=58.8
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~ 498 (837)
++..|.+-|.+.|+.++..|+..|..+.. .......+....-+..|.+++.. .++.|+..++..+..-+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 45567777888999999999999999987 45678888888889999999987 788999999988887764
No 330
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.84 E-value=1.9e+02 Score=34.46 Aligned_cols=315 Identities=15% Similarity=0.101 Sum_probs=160.1
Q ss_pred hhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHh-cCChhHHHHHHHHHHHhccCh-HHHHH
Q 003227 387 LMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLSVNA-KVAKA 464 (837)
Q Consensus 387 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~-~~~~~ 464 (837)
.++++-=-+|..|++++..++..+-.. .-.-..+++...+.|. +.+--++..|+-+|..+..+. ...+.
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d---------~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKD---------PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCC---------hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh
Confidence 334444457899999999988554433 1233445677788888 667789999999999987743 33333
Q ss_pred HHHc--CCHHHHHHHHhcCCHH-HHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHh---hCCCCHHHHHHHHHHH
Q 003227 465 VAEE--GGINILAVLARSMNRL-VAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFK---WSSGGDGVLERAAGAL 537 (837)
Q Consensus 465 i~~~--g~i~~L~~lL~~~~~~-~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~---~~~~~~~~~~~a~~~L 537 (837)
+... +.++.++.+.+.-+.+ +...-=.+++..+.. ......+++. ......+++.+ ....+++=...|.++|
T Consensus 541 ~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~-La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQN-LAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHH-HHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 3322 1255666666553322 222222223333321 1111222221 23445666653 1233344555666777
Q ss_pred HHhhc---CCCchHHHHhc--C-cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC
Q 003227 538 ANLAA---DDKCSMEVALA--G-GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (837)
Q Consensus 538 ~~l~~---~~~~~~~l~~~--g-~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~ 611 (837)
..+.. .-+....+.+. . +.+.+-.++.+. -.++-+.++..+..+.... ++....+ =+..+.+.+.+..
T Consensus 620 ~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~---~~Isp~m--W~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 620 RTISTILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLS---KEISPIM--WGLLELILEVFQD 693 (1010)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhh---cccCHHH--HHHHHHHHHHHhh
Confidence 76653 22222222221 2 334444444443 3677788888888877642 2111111 2556777777777
Q ss_pred CCHHHHHHHHHHHHhhcCChhhHHHHHHcC-C----HHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCC
Q 003227 612 PHEGVRQEAAGALWNLSFDDRNREAIAAAG-G----VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGG 686 (837)
Q Consensus 612 ~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g-~----i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~ 686 (837)
+..+--....-+|.|....... .+...+ . ...+..++.+ .+....=.+.|+..+..+..+-.+ ..+ ..
T Consensus 694 ~~~dyf~d~~~~l~N~vt~g~~--~~~s~~~y~~il~~i~~~~l~~-e~~~D~d~~~a~kLle~iiL~~kg---~~d-q~ 766 (1010)
T KOG1991|consen 694 DGIDYFTDMMPALHNYVTYGTP--SLLSNPDYLQILLEIIKKVLTS-ENGEDSDCESACKLLEVIILNCKG---LLD-QY 766 (1010)
T ss_pred hhHHHHHHHHHHHhhheeeCch--hhhccchHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHHhcC---cHh-hH
Confidence 7777777778888886554221 111211 1 2223333433 123333334466666554321111 000 03
Q ss_pred hHHHHHHhc------cCCHHHHHHHHHHHHHH-cCCcccHHHHHH
Q 003227 687 VAPLIALAR------SEAEDVHETAAGALWNL-AFNPGNALRIVE 724 (837)
Q Consensus 687 i~~L~~lL~------s~~~~v~~~a~~~L~~l-~~~~~~~~~i~~ 724 (837)
+|.++++.. ..+...+..+.....|. -.+|...-.+.+
T Consensus 767 iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe 811 (1010)
T KOG1991|consen 767 IPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILE 811 (1010)
T ss_pred hHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 666555532 24566677776666554 335655444444
No 331
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.16 E-value=1.5e+02 Score=32.98 Aligned_cols=107 Identities=22% Similarity=0.194 Sum_probs=72.6
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc---Ccc
Q 003227 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV---SEA 676 (837)
Q Consensus 600 ~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~---~~~ 676 (837)
+.+..+++-+.+++..||..++.+|+-++..-......+-.|.+..|..-+-+ ..+.||.+|+.+|+.+-. +++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~D---RE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFD---REKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHhccCChH
Confidence 55666677778889999999999999887653333333445566666666655 889999999999998753 333
Q ss_pred chhhhhccCChHHHHHHhc-cCCHHHHHHHHHHHHHHcCCcccH
Q 003227 677 NCIAIGREGGVAPLIALAR-SEAEDVHETAAGALWNLAFNPGNA 719 (837)
Q Consensus 677 ~~~~l~~~~~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~ 719 (837)
++ ....|+..++ +++.+|+..| |.|+..++...
T Consensus 168 n~-------~~n~l~~~vqnDPS~EVRr~a---llni~vdnsT~ 201 (885)
T COG5218 168 NR-------IVNLLKDIVQNDPSDEVRRLA---LLNISVDNSTY 201 (885)
T ss_pred HH-------HHHHHHHHHhcCcHHHHHHHH---HHHeeeCCCcc
Confidence 32 2334566664 5678888876 55666555444
No 332
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=73.89 E-value=20 Score=40.63 Aligned_cols=135 Identities=15% Similarity=0.076 Sum_probs=95.2
Q ss_pred HHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHhhccCccc
Q 003227 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSVGEEH 502 (837)
Q Consensus 424 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~ 502 (837)
-+.+.++|.|...+++.+..+|..++..+..++..-+ ..+++.-.+|.+-.+. +..+..++-.++.++..+.
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----- 457 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----- 457 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH-----
Confidence 3456678899999999999999999999999887322 3344444567776653 4568888888888888888
Q ss_pred hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcC
Q 003227 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC 566 (837)
Q Consensus 503 ~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~ 566 (837)
+.+-....++.+.-+++.....++.+....+.+..++.........+....++|.++.+...+
T Consensus 458 -q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 458 -QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred -HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 233344456666667766567888888888888888876544433444456777777766544
No 333
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=73.55 E-value=8.2 Score=31.58 Aligned_cols=82 Identities=16% Similarity=0.052 Sum_probs=57.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHH
Q 003227 645 ALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE 724 (837)
Q Consensus 645 ~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 724 (837)
..+..+.+ +.+.+|..++..|.++..... .......+.+..++..|+++++-|=.+|+..|..|+....
T Consensus 7 ~al~~L~d---p~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p------- 75 (92)
T PF10363_consen 7 EALSDLND---PLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP------- 75 (92)
T ss_pred HHHHHccC---CCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-------
Confidence 33444554 888899999999999987654 2222234566677788899999999999999999986222
Q ss_pred cCCHHHHHHHHhc
Q 003227 725 EGGVPALVHLCSS 737 (837)
Q Consensus 725 ~~~i~~L~~ll~~ 737 (837)
..+++.|++...+
T Consensus 76 ~~vl~~L~~~y~~ 88 (92)
T PF10363_consen 76 DEVLPILLDEYAD 88 (92)
T ss_pred HHHHHHHHHHHhC
Confidence 1345666665544
No 334
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.23 E-value=72 Score=35.92 Aligned_cols=182 Identities=15% Similarity=0.051 Sum_probs=102.3
Q ss_pred HHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHH
Q 003227 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAK 463 (837)
Q Consensus 384 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 463 (837)
.+.++..-.++++-.|..+|+.+......+ ......-.....+..++..+. .++..+..++++|.|+..++-.++
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~----s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~ 623 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSN----SLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRE 623 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchh----hhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHH
Confidence 444444556677777887777665433322 111111122234455555555 668889999999999999887776
Q ss_pred HHHHcCCHHHHHHHH----hcCCHHHHHHHHHHHHhhcc--CccchHHHHhhCCHHHHHHHHHhhCCC--CHHHHHHHHH
Q 003227 464 AVAEEGGINILAVLA----RSMNRLVAEEAAGGLWNLSV--GEEHKGAIADAGGVKALVDLIFKWSSG--GDGVLERAAG 535 (837)
Q Consensus 464 ~i~~~g~i~~L~~lL----~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~--~~~~~~~a~~ 535 (837)
-+... ...+...+ ..++..++.+.+....|.+- ...+- +.++.+.+...+...... +-+-....+.
T Consensus 624 ~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~ 697 (745)
T KOG0301|consen 624 LFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLV 697 (745)
T ss_pred HHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 66544 22332222 22345565544444444432 11111 245666666555432222 2234456677
Q ss_pred HHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHH
Q 003227 536 ALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAA 576 (837)
Q Consensus 536 ~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~ 576 (837)
+|++|+..+....++.+.-.+..+++-+++....+.....+
T Consensus 698 AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a 738 (745)
T KOG0301|consen 698 ALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIA 738 (745)
T ss_pred HHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHH
Confidence 88888888888888877777777777776544333333333
No 335
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=73.20 E-value=2.1 Score=41.54 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=41.8
Q ss_pred CCCCCCCCCHHHHHHHHccCC-hHhHHHHHhhcHHHHHHhcCCCcccccC
Q 003227 36 EVVDWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGASPCLWSSLD 84 (837)
Q Consensus 36 ~~~~~~~LP~eil~~I~~~l~-~~d~~~~~~v~~~w~~~~~~~~~~~~l~ 84 (837)
.+..+.+||.|++..|+.+++ .+|+..++++-.....+.-+..+|+++.
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLc 247 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLC 247 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 457789999999999999998 8999999999988888877777787543
No 336
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=72.88 E-value=16 Score=32.65 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=56.4
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHHhc------CCHHHHHHHHHHHHhhc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS------MNRLVAEEAAGGLWNLS 497 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~a~~~L~~l~ 497 (837)
++..|.+-|.+.++.++..|+..|-.+.. .+.....|...+.+..+++++.. .++.|+...+..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45567777889999999999999999987 46778888888889999999953 46888888887776655
No 337
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=72.66 E-value=27 Score=28.87 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=55.3
Q ss_pred HhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 003227 426 KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLW 494 (837)
Q Consensus 426 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~ 494 (837)
....+..|++.+..+..-.+..++..+..+...+.....+.+.|+++-|-++-..-++..+...-.++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 445567888888888888999999999999999999999999999988777766667777666555543
No 338
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=72.54 E-value=1.2e+02 Score=31.02 Aligned_cols=204 Identities=10% Similarity=0.041 Sum_probs=134.9
Q ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-----cchHHHHhhCCHHHHHHHHHhhCCC-CHHHHHHHHH
Q 003227 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-----EHKGAIADAGGVKALVDLIFKWSSG-GDGVLERAAG 535 (837)
Q Consensus 462 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-----~~~~~l~~~g~i~~L~~lL~~~~~~-~~~~~~~a~~ 535 (837)
...+.+.|.+..+++.+...+-+.+..+..+..++-.-. .....+.. -.+.+-.+++. .. .+++.-++..
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~--~~~~~~iaL~cg~ 147 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKG--YENTPEIALTCGN 147 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhh--hccchHHHHHHHH
Confidence 456677788999999998888888888888887776422 12222221 23344445543 23 3666666767
Q ss_pred HHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh-cc-c-hHHHHHHHcCCC
Q 003227 536 ALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ-EA-G-ALEALVQLTRSP 612 (837)
Q Consensus 536 ~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~-~-~i~~L~~lL~~~ 612 (837)
.+....+.+...+.+.+.........+++.+. -++...|......+.... .....+.+. .. . ..+.--.++.++
T Consensus 148 mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~-FdiasdA~~tfK~llt~H--k~~vaEfl~~n~d~ff~e~~~~Ll~s~ 224 (342)
T KOG1566|consen 148 MLRECIRHEFLAKIILESTNFEKFFLYVQLPN-FDIASDAFSTFKELLTRH--KSVVAEFLIRNYDNFFAEVYEKLLRSE 224 (342)
T ss_pred HHHHHHhhHHHHHHHHcchhHHHHHHHHhccc-hHHHHHHHHHHHHHHHHh--HHHHHHHHHhChhhhHHHHHHHHhccc
Confidence 77777767777777777777888888887765 466666766666665421 000011111 00 1 123355667888
Q ss_pred CHHHHHHHHHHHHhhcCChhhHHHHHH----cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCc
Q 003227 613 HEGVRQEAAGALWNLSFDDRNREAIAA----AGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE 675 (837)
Q Consensus 613 ~~~~~~~a~~~L~~Ls~~~~~~~~l~~----~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~ 675 (837)
+--++..+..+|+.+-.+.+|...+.. ...+..++.+|++ .+..+|.+|.-+..-...++
T Consensus 225 Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrd---kskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 225 NYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRD---KSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred ceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhC---ccccchHHHHHHHHHHhcCC
Confidence 888999999999998777666554444 4678999999998 88899999999988887654
No 339
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=72.50 E-value=15 Score=34.05 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCC--HHHHHHHHhcC-CHHHHHHHHHHHHhhcc----Cccc
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG--INILAVLARSM-NRLVAEEAAGGLWNLSV----GEEH 502 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~--i~~L~~lL~~~-~~~~~~~a~~~L~~l~~----~~~~ 502 (837)
+..+..+|++.++..+..++..+........ .+.+.+.++ +..++.+|+.+ .+.+.+.++.+|..|.. .++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 4478889999999999999888888776432 245545555 88889999774 56678888888887764 2344
Q ss_pred hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 003227 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (837)
Q Consensus 503 ~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~ 542 (837)
.+.+... .++.++..+-... ++......++.+|..+-.
T Consensus 106 ~Rei~tp-~l~~~i~~ll~l~-~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 106 TREIATP-NLPKFIQSLLQLL-QDSSCPETALDALATLLP 143 (165)
T ss_pred HHHHhhc-cHHHHHHHHHHHH-hccccHHHHHHHHHHHHH
Confidence 4444332 2333333322111 113455566666655543
No 340
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.82 E-value=31 Score=30.97 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=61.6
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
..++..|.+-|.++++.++..|+..|-.+..+ ......+...+.+..|..++.. ..++.|+..++..+..++.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT--TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc--cCCHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999888887 3446777788899999999875 5889999999999999884
No 341
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=71.67 E-value=2.1e+02 Score=36.75 Aligned_cols=212 Identities=13% Similarity=0.041 Sum_probs=105.8
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchH
Q 003227 472 NILAVLARSM---NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSM 548 (837)
Q Consensus 472 ~~L~~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 548 (837)
..+++.++.. ...+.++=..++.++.... +...++.++-++- .+.+..-+..+-.++.+-........
T Consensus 345 ~lil~~lks~lr~~k~l~eawiK~I~~~~~~~-------~hkv~Dl~lLlil--~s~~~~~~k~ie~ilkkKI~~g~it~ 415 (1426)
T PF14631_consen 345 KLILDVLKSGLRFSKDLSEAWIKAIESLEDAS-------DHKVIDLWLLLIL--YSINEDNRKSIEKILKKKIKSGHITE 415 (1426)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHGGGST-------T--THHHHHHHHH--HHH-HHHHHHHHHHHHHHHTTT-S-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhcCCCcc-------ccchHHHHHHHHH--HcCCccchHHHHHHHHHHHHhCcccH
Confidence 3455555542 4445555555666664322 2224555555443 22344455666677777776655544
Q ss_pred HHHh----------cCcHHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHH
Q 003227 549 EVAL----------AGGVHALVMLAR---SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (837)
Q Consensus 549 ~l~~----------~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 615 (837)
.+.+ ...++.++.+.+ .+.++.++..+......+-.. . .......++..|+..+.+++..
T Consensus 416 ~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~---f----ds~~qqeVv~~Lvthi~sg~~~ 488 (1426)
T PF14631_consen 416 QLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKE---F----DSYCQQEVVGALVTHIGSGNSQ 488 (1426)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHS---S-----HHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh---c----cchhHHHHHHHHHHHHcCCcHH
Confidence 3322 244556655432 233488887777776666543 1 1223456888888887666665
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHc-CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccc-hhhhhccCChHHHHHH
Q 003227 616 VRQEAAGALWNLSFDDRNREAIAAA-GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN-CIAIGREGGVAPLIAL 693 (837)
Q Consensus 616 ~~~~a~~~L~~Ls~~~~~~~~l~~~-g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~-~~~l~~~~~i~~L~~l 693 (837)
-...|+.+|..|+.. +...+... -.+..++..+.. -+..-......+|+.++.+... ...+.+ ...-.+-+.
T Consensus 489 ev~~aL~vL~~L~~~--~~~~l~~fa~~l~giLD~l~~---Ls~~qiR~lf~il~~La~~~~~~~s~i~d-el~ivIRKQ 562 (1426)
T PF14631_consen 489 EVDAALDVLCELAEK--NPSELQPFATFLKGILDYLDN---LSLQQIRKLFDILCTLAFSDSSSSSSIQD-ELHIVIRKQ 562 (1426)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTHHHHHGGGGGGGG-----HHHHHHHHHHHHHHHHHHSS---HHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhcCCcccchhhHH-HHHHHHHHh
Confidence 557889999999863 22233221 123334444443 4444444567777777743211 111111 112223355
Q ss_pred hccCCHHHHHHH
Q 003227 694 ARSEAEDVHETA 705 (837)
Q Consensus 694 L~s~~~~v~~~a 705 (837)
|.+.+...+..+
T Consensus 563 Lss~~~~~K~~G 574 (1426)
T PF14631_consen 563 LSSSNPKYKRIG 574 (1426)
T ss_dssp HT-SSHHHHHHH
T ss_pred hcCCcHHHHHHh
Confidence 666777666643
No 342
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=71.38 E-value=25 Score=31.21 Aligned_cols=74 Identities=15% Similarity=0.044 Sum_probs=59.6
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
..++..|.+-|.++++.++..|+..|-.+..+ ......+...+.+..|..++.. ....+.|+..++..+..++.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~-~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP-KYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHH
Confidence 35677788888999999999999999988887 3446777788899999999876 33334499999999988874
No 343
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=70.63 E-value=3.5 Score=21.56 Aligned_cols=9 Identities=44% Similarity=0.534 Sum_probs=3.4
Q ss_pred ccEEEeccC
Q 003227 255 LVGLDVSRT 263 (837)
Q Consensus 255 L~~L~l~~~ 263 (837)
|+.|++++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 444444443
No 344
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=70.53 E-value=47 Score=30.61 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=76.5
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHH
Q 003227 471 INILAVLARSM-NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (837)
Q Consensus 471 i~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (837)
++.|+++++.+ +..++..++++|+.|..-+..+.+....+.- ..-. ...+....... +.+... ....++
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~----~~~~--~~~~~~~~~~~---l~~~~~-~~~~ee 81 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD----SKSS--ENSNDESTDIS---LPMMGI-SPSSEE 81 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC----cccc--ccccccchhhH---HhhccC-CCchHH
Confidence 56677788764 6899999999999998755444332221100 0000 00011111111 111111 112233
Q ss_pred HHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhh
Q 003227 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (837)
Q Consensus 550 l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 627 (837)
..-.-++..|+..|++++-..-...++.++.++... ...+..-.=..++|.+++.++..++..++....-|..|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~----l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKS----LGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh----cCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333446788888888876555556777777777642 11111112246778888888876667777665555544
No 345
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=70.34 E-value=1.8 Score=37.86 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=5.7
Q ss_pred CCCCCEEEecCC
Q 003227 178 CPKLKKLRLSGI 189 (837)
Q Consensus 178 ~~~L~~L~l~~~ 189 (837)
+|.|++|+++..
T Consensus 99 m~aLr~lNl~~N 110 (177)
T KOG4579|consen 99 MPALRSLNLRFN 110 (177)
T ss_pred hHHhhhcccccC
Confidence 444455444444
No 346
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=69.55 E-value=1.2e+02 Score=32.42 Aligned_cols=145 Identities=15% Similarity=0.016 Sum_probs=78.2
Q ss_pred HHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchH-HHHHHHcC------CCCHHHHHHHHH
Q 003227 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGAL-EALVQLTR------SPHEGVRQEAAG 622 (837)
Q Consensus 550 l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i-~~L~~lL~------~~~~~~~~~a~~ 622 (837)
+.+..-.+-+-+-++..+....+.+|+..+..++.. .+ ..+ .+.+ ..+-.++. ..+..-+..|+.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~---~~---~~v--~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~ 277 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK---FE---KQV--TSILMQYIQQLLQQYASNPSNNWRSKDGALY 277 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH---HH---HHH--HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH---Hh---HHH--HHHHHHHHHHHHHHHhhCCcccHHHHHHHHH
Confidence 334444444444444444456677888999998863 11 100 1111 22223332 245667777888
Q ss_pred HHHhhcCChhh-------------HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHH
Q 003227 623 ALWNLSFDDRN-------------REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAP 689 (837)
Q Consensus 623 ~L~~Ls~~~~~-------------~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~ 689 (837)
.+..++..... -..+...-.++.|. .+ .+..+-++..|++.+..+...- .+..+ .+.+|.
T Consensus 278 Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~-~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~~~~ 350 (370)
T PF08506_consen 278 LIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PD-VNSHPILKADAIKFLYTFRNQL-PKEQL--LQIFPL 350 (370)
T ss_dssp HHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----S-S-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHH
T ss_pred HHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc---cc-CCCCcchHHHHHHHHHHHHhhC-CHHHH--HHHHHH
Confidence 88888765321 12222222333333 11 2467778888988887765431 11122 237899
Q ss_pred HHHHhccCCHHHHHHHHHHH
Q 003227 690 LIALARSEAEDVHETAAGAL 709 (837)
Q Consensus 690 L~~lL~s~~~~v~~~a~~~L 709 (837)
++..|.+++.-|..+|+.++
T Consensus 351 l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 351 LVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhCCCCcchhhhhhhhC
Confidence 99999999999999998775
No 347
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=69.24 E-value=21 Score=32.14 Aligned_cols=70 Identities=17% Similarity=0.075 Sum_probs=57.7
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhccC--hHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~ 498 (837)
++..|.+-|.+.++.+|..|+..|..+..+ ......+.+.+-+..|++++.. .++.|+..++..+..-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999884 5677888888889999998864 678899998888877664
No 348
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=69.07 E-value=23 Score=31.41 Aligned_cols=70 Identities=20% Similarity=0.068 Sum_probs=57.0
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhccC--hHHHHHHHHcCCHHHHHHHHhc---CCHHHHHHHHHHHHhhcc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS---MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~~l~~ 498 (837)
++..|-+-|+++++.++..|+.+|..+..+ +.....+.....+..+++++.. .++.++..+...+..-+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 355677778899999999999999999884 4577888887778889999865 478899999988887764
No 349
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=68.05 E-value=36 Score=38.47 Aligned_cols=184 Identities=18% Similarity=0.100 Sum_probs=112.9
Q ss_pred HHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchH
Q 003227 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG 504 (837)
Q Consensus 425 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 504 (837)
...+.+|.|++++++.|..+|..-+.-+-+... ...+++++....+.+...+.+.++.+++.++..+..|+.-= +.+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL-~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL-SKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh-chh
Confidence 455788999999999999999765555544433 23456677778999999999999999999999888877420 000
Q ss_pred HHHhhCCHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCc-HHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003227 505 AIADAGGVKALVDLIFKW-SSGGDGVLERAAGALANLAADDKCSMEVALAGG-VHALVMLARSCKFEGVQEQAARALANL 582 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~-i~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (837)
. .-..+++.+... .+++..++-+..-+|+.++...... +..++ +..+.+-++++- ...+.++..++...
T Consensus 404 ~-----Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf-~paR~a~v~~l~at 474 (690)
T KOG1243|consen 404 N-----LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPF-VPARKAGVLALAAT 474 (690)
T ss_pred h-----hcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCC-CCchhhhhHHHhhc
Confidence 0 111233333221 3455567777777777766532211 12222 334444555554 45567777777666
Q ss_pred hcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHh
Q 003227 583 AAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWN 626 (837)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~ 626 (837)
....+ +.. +...+++.+..+.-+++..++..|-.++..
T Consensus 475 ~~~~~----~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 475 QEYFD----QSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ccccc----hhh--hhhhccccccccccCcccchhhHHHHHHHH
Confidence 55321 111 234667777777777777777777666543
No 350
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=67.76 E-value=2.1 Score=37.71 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=12.7
Q ss_pred CCCccEEEecCC-CCCChHHhhCCCCCCEeecc
Q 003227 204 CPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVA 235 (837)
Q Consensus 204 ~~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~ls 235 (837)
|++|+.+.+.++ ..+.+..+..+++|+.+++.
T Consensus 57 ~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 57 CKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred ccccccccccccccccccccccccccccccccC
Confidence 445555555432 12233344445555555553
No 351
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=67.65 E-value=1.1e+02 Score=29.04 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=74.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC-hH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AK 460 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~ 460 (837)
+.++++..+.+..++..|...+.......-.+.. .++|.|+.+..++++.++..|...+..+... +.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPK------------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 6677777888999999999999875544333311 2578999999999999999999999999873 33
Q ss_pred HHHHHHHcCCHHHHHHHHhc--CCHH--H---HHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHH
Q 003227 461 VAKAVAEEGGINILAVLARS--MNRL--V---AEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIF 520 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL~~--~~~~--~---~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~ 520 (837)
.-..=.. .|+..-.+.-+. ++.. . .......++.+.. +...|..+.. .+++.+.
T Consensus 79 ~v~~~~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~ 140 (187)
T PF12830_consen 79 LVESRYS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFD 140 (187)
T ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHH
Confidence 2221111 145444444332 1111 1 3444555555554 3355555533 4555554
No 352
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=67.28 E-value=1.3 Score=38.98 Aligned_cols=99 Identities=15% Similarity=0.267 Sum_probs=40.0
Q ss_pred CCCccEEecCCCC-CCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHH
Q 003227 124 ARNLRELSGDYCR-KITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINALA 201 (837)
Q Consensus 124 ~~~L~~L~l~~c~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~~~~l~ 201 (837)
|++|+.+.+.... .+.... ..+|++|+.+.+.. ....+.+. ...+|++|+++.+.+. ..+.+. ..
T Consensus 11 ~~~l~~i~~~~~~~~I~~~~----F~~~~~l~~i~~~~-~~~~i~~~----~F~~~~~l~~i~~~~~~~~i~~~----~F 77 (129)
T PF13306_consen 11 CSNLESITFPNTIKKIGENA----FSNCTSLKSINFPN-NLTSIGDN----AFSNCKSLESITFPNNLKSIGDN----AF 77 (129)
T ss_dssp -TT--EEEETST--EE-TTT----TTT-TT-SEEEESS-TTSCE-TT----TTTT-TT-EEEEETSTT-EE-TT----TT
T ss_pred CCCCCEEEECCCeeEeChhh----cccccccccccccc-ccccccee----eeecccccccccccccccccccc----cc
Confidence 4566666665321 122211 24566677777752 22222221 2234666777777542 112222 22
Q ss_pred hhCCCccEEEecCC-CCCChHHhhCCCCCCEeeccC
Q 003227 202 KLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAG 236 (837)
Q Consensus 202 ~~~~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~ls~ 236 (837)
..|++|+.+.+..+ ..+....+.++ +|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCccccEEchhhhcCC-CceEEEECC
Confidence 34677777777543 22333455565 677776653
No 353
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=67.20 E-value=1.3e+02 Score=38.38 Aligned_cols=114 Identities=15% Similarity=0.013 Sum_probs=66.5
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhc----------cCChHHHHHH----hccCCHHHHHHHH
Q 003227 641 GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR----------EGGVAPLIAL----ARSEAEDVHETAA 706 (837)
Q Consensus 641 g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~----------~~~i~~L~~l----L~s~~~~v~~~a~ 706 (837)
..+..++-++-. +.+..-+..+-.++.+-.........+.+ ...++.++.+ +++.++.++..+.
T Consensus 379 kv~Dl~lLlil~--s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~ 456 (1426)
T PF14631_consen 379 KVIDLWLLLILY--SINEDNRKSIEKILKKKIKSGHITEQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGS 456 (1426)
T ss_dssp -THHHHHHHHHH--HH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred chHHHHHHHHHH--cCCccchHHHHHHHHHHHHhCcccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 345555555432 13444556666666665543222221111 2455666554 4789999999999
Q ss_pred HHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 707 GALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 707 ~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
.....+...-+ ...+..++..|+..+.++.+..+ ..|..+|..++...++
T Consensus 457 ~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 457 HLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNPS 506 (1426)
T ss_dssp HHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccHH
Confidence 98888876432 22344466689988887764544 6888899988876663
No 354
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.19 E-value=12 Score=41.03 Aligned_cols=89 Identities=22% Similarity=0.198 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCCCeEEeCCCCCCCC-CHHHHHHHHhcCCCCCEEEecCCCC-C-CHHHHHHHHhhCCCccEEEecCCCC
Q 003227 141 ATLSVIVARHEALESLQLGPDFCERI-TSDAVKAIALCCPKLKKLRLSGIRD-I-CGDAINALAKLCPNLTDIGFLDCLN 217 (837)
Q Consensus 141 ~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~-i-~~~~~~~l~~~~~~L~~L~l~~~~~ 217 (837)
..+..+..+.|.+.+++|+ .+++ .-+.+-.++...|+|+.|+|++... + ++..+..+. .+.|++|.+.||+.
T Consensus 208 ~~L~~~~~n~p~i~sl~ls---nNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k--~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 208 AVLKHIEENFPEILSLSLS---NNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK--GLPLEELVLEGNPL 282 (585)
T ss_pred HHHHHhhcCCcceeeeecc---cchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc--CCCHHHeeecCCcc
Confidence 3445555667777777774 2233 2345556777778888888877521 1 222222222 25678888888765
Q ss_pred CCh-----HHh----hCCCCCCEeec
Q 003227 218 VDE-----VAL----GNVLSVRFLSV 234 (837)
Q Consensus 218 ~~~-----~~l----~~l~~L~~L~l 234 (837)
.+. +.+ ..+|+|..||=
T Consensus 283 c~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 283 CTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred ccchhhhHHHHHHHHHhcchheeecC
Confidence 554 122 36677777753
No 355
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=66.73 E-value=53 Score=27.21 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=54.2
Q ss_pred ccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 003227 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGAL 668 (837)
Q Consensus 598 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L 668 (837)
....+..|+..+..++....+.+...+..+..++.....+.+-|+++.|.++-.. .++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~---~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPN---VEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhc---CCHHHHHHHHHHH
Confidence 4567788888888887778899999999999999999999999999997777654 5666665554444
No 356
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=64.92 E-value=2e+02 Score=30.93 Aligned_cols=134 Identities=10% Similarity=-0.020 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCchHHHHhcC---cHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCCcccchhhccch
Q 003227 526 GDGVLERAAGALANLAADDKCSMEVALAG---GVHALVMLARSCKF-EGVQEQAARALANLAAHGDSNSNNSAVGQEAGA 601 (837)
Q Consensus 526 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g---~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 601 (837)
+..+..+|+.+|+.+..+++....+-+.- .+...+..+.+++. ..+.... |..++... .+ ..+.....
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~---l~~ls~Q~--f~---~~~~~~~~ 130 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHY---LWCLSDQK--FS---PKIMTSDR 130 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHcCC--CC---Ccccchhh
Confidence 56788999999999998877655554332 34555555554432 2333334 44444321 11 12233444
Q ss_pred HHHHHHHc---C--CCCHHHHHHHHHHHHhhcCChhhHHHHHH--cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 602 LEALVQLT---R--SPHEGVRQEAAGALWNLSFDDRNREAIAA--AGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 602 i~~L~~lL---~--~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~--~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
+..++..+ . -+...+....+.++.++....+. .+.+ .-.++.++..+-+ ....++..|...+..+.
T Consensus 131 ~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~---~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 131 VERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLS---SAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHH
Confidence 55555443 2 24566778888888887765332 2332 2357777777766 66677777666665554
No 357
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.52 E-value=1.2e+02 Score=34.58 Aligned_cols=155 Identities=14% Similarity=0.029 Sum_probs=96.3
Q ss_pred HHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc--ChH----HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 003227 421 AEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAK----VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLW 494 (837)
Q Consensus 421 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~----~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~ 494 (837)
++.+.-.=.=|.|-+.|+-.|.++|..|+..+.++-- +|+ ....+.+. -...+..+|+++.+.++..|..-+.
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~ 245 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVC 245 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4444444444566677788999999999999999753 443 23344433 3567888999999999999988877
Q ss_pred hhccCccchHHHHhhCC---HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHH
Q 003227 495 NLSVGEEHKGAIADAGG---VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGV 571 (837)
Q Consensus 495 ~l~~~~~~~~~l~~~g~---i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~ 571 (837)
.+... ....|...-. +..+.+-+. .+...+++..+...|-.+..++.....+ + -++|.+-..+.+.. +.|
T Consensus 246 k~~s~--fWe~iP~~i~~~ll~kI~d~~a--~dt~s~VR~svf~gl~~~l~np~sh~~l-e-~~Lpal~~~l~D~s-e~V 318 (1005)
T KOG1949|consen 246 KITSK--FWEMIPPTILIDLLKKITDELA--FDTSSDVRCSVFKGLPMILDNPLSHPLL-E-QLLPALRYSLHDNS-EKV 318 (1005)
T ss_pred HHHHH--HHHHcCHHHHHHHHHHHHHHhh--hccchheehhHhcCcHHHHcCccchhHH-H-HHHHhcchhhhccc-hhH
Confidence 76642 1222211111 222222222 2344578888888888888777654333 1 13455555666665 788
Q ss_pred HHHHHHHHHHHh
Q 003227 572 QEQAARALANLA 583 (837)
Q Consensus 572 ~~~a~~~L~~l~ 583 (837)
+.++...|..+-
T Consensus 319 RvA~vd~ll~ik 330 (1005)
T KOG1949|consen 319 RVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHH
Confidence 887777766664
No 358
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=63.03 E-value=2.7e+02 Score=31.66 Aligned_cols=202 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhc
Q 003227 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLS 456 (837)
Q Consensus 378 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~ 456 (837)
.+....+++.++++|++++..|...+......+....+..|...+.++. -...|...-++ .+++.+...+.+|.-++
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKKWLADILSVLA 124 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHhHHHHHHHHHh
Q ss_pred c-ChHHHHH-----------HHHcCC--HHHHHHHHhcC----------CHHHHHHHHHHHHhhccCc---cchHHHHhh
Q 003227 457 V-NAKVAKA-----------VAEEGG--INILAVLARSM----------NRLVAEEAAGGLWNLSVGE---EHKGAIADA 509 (837)
Q Consensus 457 ~-~~~~~~~-----------i~~~g~--i~~L~~lL~~~----------~~~~~~~a~~~L~~l~~~~---~~~~~l~~~ 509 (837)
- .++.... +..-|- |..|..-+... ..++.+.+..++--...+. +....+.+.
T Consensus 125 mt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Ev 204 (878)
T KOG2005|consen 125 MTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLMEV 204 (878)
T ss_pred eeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q ss_pred CCHHHHHHHHHh-----------------hCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHH
Q 003227 510 GGVKALVDLIFK-----------------WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQ 572 (837)
Q Consensus 510 g~i~~L~~lL~~-----------------~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~ 572 (837)
++++.+++.... +..++..+.+.|..+-..+..-++.-.-.+..+-.+.+.+.+.+..|+..+
T Consensus 205 e~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~k 284 (878)
T KOG2005|consen 205 EGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLK 284 (878)
T ss_pred hhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHH
Q ss_pred HHHHHHHHH
Q 003227 573 EQAARALAN 581 (837)
Q Consensus 573 ~~a~~~L~~ 581 (837)
...+-.|..
T Consensus 285 KQ~~ymLaR 293 (878)
T KOG2005|consen 285 KQMAYMLAR 293 (878)
T ss_pred HHHHHHHHh
No 359
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=62.38 E-value=33 Score=30.39 Aligned_cols=70 Identities=19% Similarity=0.080 Sum_probs=55.1
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhccC--hHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHhhcc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~ 498 (837)
++..|-+-|+++++.++..|+..|..+..+ +.....+...+.+..|..++... .+.++..++..+..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 344666778889999999999999999884 56778888888899999988763 34488888887776653
No 360
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=60.50 E-value=2.3e+02 Score=29.87 Aligned_cols=156 Identities=14% Similarity=0.125 Sum_probs=104.0
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHH-hC-cHHHHHHHHhc-----CC--------hhHH
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMK-DG-GIRLLLDLAKS-----WR--------EGLQ 445 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~-~g-~i~~Lv~lL~~-----~~--------~~~~ 445 (837)
+..+-+.|.+..+.+...|...|..++.-+.... ...+.+ -. ..+.+.+++.. ++ +.+|
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~------a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGAL------AREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHH------HHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 5666777777777777777777777765222111 112222 11 22344444421 11 2788
Q ss_pred HHHHHHHHHhcc--ChHHHHHHHHcCC-HHHHHHHHhcCCHHHHHHHHHHHHh-hccCc----cchHHHHhhCCHHHHHH
Q 003227 446 SEAAKAIANLSV--NAKVAKAVAEEGG-INILAVLARSMNRLVAEEAAGGLWN-LSVGE----EHKGAIADAGGVKALVD 517 (837)
Q Consensus 446 ~~a~~~L~~l~~--~~~~~~~i~~~g~-i~~L~~lL~~~~~~~~~~a~~~L~~-l~~~~----~~~~~l~~~g~i~~L~~ 517 (837)
...+..+..+.. ++..+..+.+.+. +..+.+-+..+++++....+.+|.. +..++ ..+..+.....+..|..
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 888888777665 7788888887766 7777788888888888899988884 55543 56667777778888888
Q ss_pred HHHhhCCCCH----HHHHHHHHHHHHhhcCCC
Q 003227 518 LIFKWSSGGD----GVLERAAGALANLAADDK 545 (837)
Q Consensus 518 lL~~~~~~~~----~~~~~a~~~L~~l~~~~~ 545 (837)
+.. ..++ .+...+-..|..++.++.
T Consensus 212 Ly~---~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYS---RDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred Hhc---ccCCcccchHHHHHHHHHHHHhcCCC
Confidence 664 3444 788888899999887654
No 361
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=60.34 E-value=72 Score=28.52 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=60.0
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHhccc
Q 003227 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSC---SNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 600 ~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~L~~ll~~~---~~~~~~v~~~A~~~L~~l~~ 673 (837)
.++..+.+-+.++++.++..|+..|-.+..+ ......+...+.+..|++++... ...+..|+...+..+..++.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677788888999999999999999888887 44577788888899999998531 23678999999999988874
No 362
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=59.58 E-value=8.3 Score=32.00 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHccCChHhHHHH
Q 003227 38 VDWTSLPDDTVIQLMSCLNYRDRASL 63 (837)
Q Consensus 38 ~~~~~LP~eil~~I~~~l~~~d~~~~ 63 (837)
..|..||.|+-..|+++|+-.|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 46999999999999999999998654
No 363
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.14 E-value=40 Score=31.20 Aligned_cols=110 Identities=19% Similarity=0.058 Sum_probs=70.9
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHc--CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC---
Q 003227 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA--GGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--- 674 (837)
Q Consensus 600 ~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~--- 674 (837)
..+..+..+|+++++.-+-.++..+..++...+ .+.+.++ ..+..++..++. ++++.+.+.|+.+|..+...
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcC
Confidence 445667888999888888888887777766532 2334343 357888888887 57788899999999888743
Q ss_pred -ccchhhhhcc---CChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 675 -EANCIAIGRE---GGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 675 -~~~~~~l~~~---~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
++...++... +.++.+++++++ +.....++.+|..+..
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 4433333322 233444444443 5666667777766654
No 364
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.58 E-value=60 Score=32.96 Aligned_cols=138 Identities=19% Similarity=0.145 Sum_probs=81.4
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchh
Q 003227 601 ALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCI 679 (837)
Q Consensus 601 ~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~ 679 (837)
++...+..|.+++.+....++..+..|+.. ++..... .-+.++.++++..+....|-..|+.++..+...-...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~----L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~- 163 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPM----LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS- 163 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-
Confidence 455566667777777777777777777765 3222222 2334444444444488889999999999887642221
Q ss_pred hhhccCChHHHH-HHhcc---CCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 003227 680 AIGREGGVAPLI-ALARS---EAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAY 753 (837)
Q Consensus 680 ~l~~~~~i~~L~-~lL~s---~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~ 753 (837)
+.+ .+..++ .+++. ++-.|++.|-.+|..|..+..-. .+++.|+..+...+ +.++..++....+
T Consensus 164 -i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n-~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 164 -IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSN-PRVRAKAALCFSR 231 (334)
T ss_pred -HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhc-hhhhhhhhccccc
Confidence 111 233333 34432 34569999999999998754322 23445665565544 5566665554443
No 365
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=58.12 E-value=34 Score=39.97 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 003227 527 DGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (837)
Q Consensus 527 ~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L 605 (837)
+.++..+.-+|++++- ++... ...+|.|++-|+..++..++-+.+-++..+|.++ ...-...+|.+
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y--------Tam~d~YiP~I 1011 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY--------TAMTDRYIPMI 1011 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH--------HHHHHHhhHHH
Confidence 3566777888888885 33322 2358899999988877888888888888888752 22235788999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcC--CHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 606 VQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAG--GVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 606 ~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g--~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
...|.++++-+|.++...|.+|-...-.+ -.| .+..++.++. .+++++.-|-..++.+-
T Consensus 1012 ~~~L~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D----~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1012 AASLCDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLD----ANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcc----cCHHHHHHHHHHHHHHH
Confidence 99999999999999999999875532111 122 1333444443 67777777766666554
No 366
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=57.92 E-value=13 Score=31.11 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHH
Q 003227 446 SEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAE 487 (837)
Q Consensus 446 ~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 487 (837)
...+..+..++..|+.-..+++.|+++.|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 456778888999999999999999999999999998876653
No 367
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=57.57 E-value=34 Score=30.85 Aligned_cols=72 Identities=11% Similarity=-0.050 Sum_probs=58.7
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHHcCCc--ccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 686 GVAPLIALARSEAEDVHETAAGALWNLAFNP--GNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 686 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~--~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
++..|..-+.++++.++..|+..|-.+..+- .-+..+.....+..|+.++.....+.|+..+...+..+...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 5667777788899999999999999988743 34566777788889999998755688999999999988754
No 368
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=57.38 E-value=1.6e+02 Score=27.68 Aligned_cols=112 Identities=24% Similarity=0.162 Sum_probs=72.2
Q ss_pred CHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHh--------------------cCcHHHHHHHHhcCCCHH
Q 003227 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL--------------------AGGVHALVMLARSCKFEG 570 (837)
Q Consensus 511 ~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--------------------~g~i~~L~~ll~~~~~~~ 570 (837)
.-+.|+..+. .+.++.++..|+.++..|-.+...--...+ ...=..|+..++.+.+..
T Consensus 40 ~~~sLlt~il--~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~ 117 (182)
T PF13251_consen 40 ATPSLLTCIL--KDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPP 117 (182)
T ss_pred CCcchhHHHH--cCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 4455666554 467889999999999988764321100111 011245566666666678
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH----HHHcCCCCHHHHHHHHHHHHhhcCC
Q 003227 571 VQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL----VQLTRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L----~~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
+....++++..+... .++.+- ..|.++.+ ..++.+.|.+++..++.++..+...
T Consensus 118 ~l~q~lK~la~Lv~~---tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 118 VLTQLLKCLAVLVQA---TPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcc---CChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 888999999999886 343333 24555544 4556778999999998888876553
No 369
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=56.70 E-value=36 Score=30.49 Aligned_cols=74 Identities=22% Similarity=0.158 Sum_probs=57.5
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh--hhHHHHHHcCCHHHHHHHHhhcCCCCHH--HHHHHHHHHHhccc
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVVLAQSCSNASPG--LQERAAGALWGLSV 673 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~--v~~~A~~~L~~l~~ 673 (837)
..++..|.+-|.+.++.++..|+..|-.+..+. .....+.....+..|..++.+ ....+. |++.+...+..++.
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~-~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS-KKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH-TTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc-CCCCchhHHHHHHHHHHHHHHH
Confidence 456777888889999999999999998888873 446667677788889998876 223333 89999999988774
No 370
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=55.37 E-value=9.3 Score=22.70 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=11.7
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCC
Q 003227 127 LRELSGDYCRKITDATLSVIVARHE 151 (837)
Q Consensus 127 L~~L~l~~c~~~~~~~l~~~~~~~~ 151 (837)
||+|.|.....-.+..+..+.+.||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4555555544223334555555444
No 371
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=54.62 E-value=10 Score=22.68 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=18.3
Q ss_pred HHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHh
Q 003227 395 VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438 (837)
Q Consensus 395 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 438 (837)
+|..|+.+|+++ .+..+++.|++.|+
T Consensus 1 VR~~Aa~aLg~i------------------gd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQI------------------GDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-------------------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc------------------CCHHHHHHHHHHhc
Confidence 577888999873 33456778888775
No 372
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=54.40 E-value=2e+02 Score=30.54 Aligned_cols=156 Identities=13% Similarity=0.029 Sum_probs=91.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhc---------CCCHHHHHHHHHHHHHHhc
Q 003227 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS---------CKFEGVQEQAARALANLAA 584 (837)
Q Consensus 514 ~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~---------~~~~~~~~~a~~~L~~l~~ 584 (837)
.++..|.+ ......+...+.+++-|+++...-..+....-++.|+.+.+- ..+..+...+..+|+|+..
T Consensus 49 ~i~~Vle~--~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 49 RIFEVLEN--GEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHhc--CCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 46667753 222445567777888888776544443333345555554431 1235778899999999999
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCC-----CCHHHHHHHHHHHHhhcCC-hhh-HHHHHHcCCHHHHHHHHhhcCCCC
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRS-----PHEGVRQEAAGALWNLSFD-DRN-REAIAAAGGVEALVVLAQSCSNAS 657 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~~Ls~~-~~~-~~~l~~~g~i~~L~~ll~~~~~~~ 657 (837)
+ ++..+....+......+.+.+.. ...++...-+..|.-++.- ... .+.+.+.+|++.+...+.+....+
T Consensus 127 ~---Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 127 H---SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred c---cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 7 45555555566655555555422 1223444445555555443 344 455667799999999987632111
Q ss_pred ------------HHHHHHHHHHHHhcccC
Q 003227 658 ------------PGLQERAAGALWGLSVS 674 (837)
Q Consensus 658 ------------~~v~~~A~~~L~~l~~~ 674 (837)
.....+|+.++.|++..
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 23344677777887754
No 373
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.33 E-value=88 Score=31.80 Aligned_cols=129 Identities=17% Similarity=0.152 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccch
Q 003227 523 SSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGA 601 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 601 (837)
.+.+.+....++..++.|+. +++....+.. ..|-.+++-+++.. ..|.+.|+.++..+..... ..+. . -
T Consensus 98 ~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlR-S~VsraA~~t~~difs~ln-----~~i~--~-~ 167 (334)
T KOG2933|consen 98 SSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLR-SAVSRAACMTLADIFSSLN-----NSID--Q-E 167 (334)
T ss_pred chHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHH-----HHHH--H-H
Confidence 44566666666666666665 2322222211 24555666666665 7788899999998876421 1111 1 3
Q ss_pred HHHHHHH-cCC---CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 003227 602 LEALVQL-TRS---PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWG 670 (837)
Q Consensus 602 i~~L~~l-L~~---~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~ 670 (837)
.+.++.. +.. .+.-+++.|-.+|..+..+-... .+++.|+..++. .++.++..++....+
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~---~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQH---SNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhh---hchhhhhhhhccccc
Confidence 3444433 332 24458899999999888773322 145677777776 777777776665544
No 374
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=53.67 E-value=3.1e+02 Score=29.40 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhCC---HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHH
Q 003227 482 NRLVAEEAAGGLWNLSVGEEHKGAIADAGG---VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHA 558 (837)
Q Consensus 482 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~---i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~ 558 (837)
+..+..+|+..|+.+..+++....+-+.-+ +...+..+.. ...+..+....+++|..=...+. +.....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~-~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQN-PNSPKSICTHYLWCLSDQKFSPK----IMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHH
Confidence 667888999999999887765555544433 3344455543 34455666666666654333332 333334444
Q ss_pred HHHHHhc----CCCHHHHHHHHHHHHHHhcCCCCCCcccchhh-cc-chHHHHHHHcCCCCHHHHHHHHHHHHhhc
Q 003227 559 LVMLARS----CKFEGVQEQAARALANLAAHGDSNSNNSAVGQ-EA-GALEALVQLTRSPHEGVRQEAAGALWNLS 628 (837)
Q Consensus 559 L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~-~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls 628 (837)
++..+.. -....+....+.++.++... .+ ..+. .. .-++.++..+-+...+++..|...+..+.
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q---~p---~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQ---FP---QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4444332 22256777888888888874 22 2222 22 35677777766666777777665555443
No 375
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=52.66 E-value=1e+02 Score=29.01 Aligned_cols=116 Identities=17% Similarity=0.073 Sum_probs=67.6
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-------CCccc---chhh-c-----cchHHHHHHHcCCC-CHHHH
Q 003227 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDS-------NSNNS---AVGQ-E-----AGALEALVQLTRSP-HEGVR 617 (837)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~-------~~~~~---~~~~-~-----~~~i~~L~~lL~~~-~~~~~ 617 (837)
.-+.|+..+...+++.++..|+.++..+-.+... ..... .-+. . ...-..|+..|..+ +..+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 3444555443333589999999999988664200 00000 0000 0 01123344555544 67788
Q ss_pred HHHHHHHHhhcCChhh-H--HHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC
Q 003227 618 QEAAGALWNLSFDDRN-R--EAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~~~-~--~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
...+.++..|..+.+. | ..+.. ..+..+..++.+ .|..++..++.++..+...
T Consensus 120 ~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~---~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRH---RDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcC
Confidence 8889999988877444 2 22211 245566666766 8889999999988887653
No 376
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=51.98 E-value=62 Score=27.81 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.6
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEE 468 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 468 (837)
+|+.|+.-|.++++++...|..+|...+.++...+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5778999999999999999999999999877666666554
No 377
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=51.93 E-value=2.2e+02 Score=27.04 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=51.9
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhcc----ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV----NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~ 498 (837)
.++.++++.-+++..++..|+..+.-+.. +|. ..+|.++.+..++++.++..|...+..+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 45678888889999999999999977654 331 148999999999999999999999999975
No 378
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=51.91 E-value=4.4e+02 Score=30.60 Aligned_cols=120 Identities=15% Similarity=0.049 Sum_probs=73.9
Q ss_pred hCcHHHHHHHHhc--------CChhHHHHHHHHHHHhcc---ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003227 427 DGGIRLLLDLAKS--------WREGLQSEAAKAIANLSV---NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWN 495 (837)
Q Consensus 427 ~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~l~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~ 495 (837)
.|.++-++..|.. +++.-.+.|++.++++.. .+..-..+.+.=.++.++-.++++.--++.+||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 4778888888832 123334567777777654 22222333333346666667788888899999999999
Q ss_pred hccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHH
Q 003227 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA 551 (837)
Q Consensus 496 l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 551 (837)
+.. +.+..-.-..+.+.....+++ .+-.++..|+-++.-+-.+......+.
T Consensus 487 ~ee--Dfkd~~ill~aye~t~ncl~n---n~lpv~ieAalAlq~fi~~~q~h~k~s 537 (970)
T COG5656 487 IEE--DFKDNGILLEAYENTHNCLKN---NHLPVMIEAALALQFFIFNEQSHEKFS 537 (970)
T ss_pred HHH--hcccchHHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHHhchhhhHHHH
Confidence 843 233222233344555666653 556678888888887777665555443
No 379
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.69 E-value=6.7e+02 Score=32.76 Aligned_cols=248 Identities=13% Similarity=0.047 Sum_probs=121.0
Q ss_pred HHHHhhhcCc---CchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHH
Q 003227 360 ILLRTAESNP---QGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL 436 (837)
Q Consensus 360 ~l~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~l 436 (837)
.+.++.+.+- -..+. ++.-....++.-+...++-.+..++.+++.++..-+... .-.+..+..+.-
T Consensus 855 ~lk~l~e~~~~~~lg~e~-v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~----------f~a~~aq~~fdk 923 (2067)
T KOG1822|consen 855 ALKYLAEFKGATSLGPEE-VRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAP----------FVASLAQNSFDK 923 (2067)
T ss_pred HHHHHHhcccccccCHHH-HHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccc----------hHHHHHHHHHHH
Confidence 3555554433 12333 444455677777777888888888899998775433321 112223445555
Q ss_pred Hhc-CChhHHHHHHHHHHHhccChH-HHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhccCc-cchHHHHhhCCH
Q 003227 437 AKS-WREGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGE-EHKGAIADAGGV 512 (837)
Q Consensus 437 L~~-~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i 512 (837)
+.+ .|+..|..-.-+|+.+-.+.. .-..--...++..+..+-+++ .|.|+..++.++.-+.... ......++. -+
T Consensus 924 las~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tl 1002 (2067)
T KOG1822|consen 924 LASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TL 1002 (2067)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HH
Confidence 565 455555443334433332110 000000112466677776664 5699999999999888643 222222222 23
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHH------Hhhc--CCCchHH-------HHhcCcHHHHHHHHhcCCCHHHHHHHHH
Q 003227 513 KALVDLIFKWSSGGDGVLERAAGALA------NLAA--DDKCSME-------VALAGGVHALVMLARSCKFEGVQEQAAR 577 (837)
Q Consensus 513 ~~L~~lL~~~~~~~~~~~~~a~~~L~------~l~~--~~~~~~~-------l~~~g~i~~L~~ll~~~~~~~~~~~a~~ 577 (837)
..+..++.+-.....++...--+++. ++.. .++.+.- -.....+- =..++.+.+++.++..+..
T Consensus 1003 sl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la-~~allls~~d~lnqa~ai~ 1081 (2067)
T KOG1822|consen 1003 SLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLA-ACALLLSHSDPLNQAAAIK 1081 (2067)
T ss_pred HHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHH-HHHHhcCCCccchHHHHHH
Confidence 44445554312222333332222222 2221 1211110 00000111 1123445556889999999
Q ss_pred HHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHh
Q 003227 578 ALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWN 626 (837)
Q Consensus 578 ~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~ 626 (837)
++.++.... + ....-.-.|+.+..++.+..--.+......++.
T Consensus 1082 clqqlhlFa---p---r~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrq 1124 (2067)
T KOG1822|consen 1082 CLQQLHLFA---P---RHVNLDSLVLQLCSLLSSSYLILRRASFSCLRQ 1124 (2067)
T ss_pred HHHHHHhhc---c---hhccHHHHHHHHHHHhcchhhhhhhhHHhhhhH
Confidence 999987642 1 122234456666666655443333333333333
No 380
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=50.16 E-value=2.9e+02 Score=28.02 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=23.4
Q ss_pred hHHHHhhCCHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhcC
Q 003227 503 KGAIADAGGVKALVDLIFKW--------SSGGDGVLERAAGALANLAAD 543 (837)
Q Consensus 503 ~~~l~~~g~i~~L~~lL~~~--------~~~~~~~~~~a~~~L~~l~~~ 543 (837)
++.+.+.+.+..+++.+... ...+..+.+.++..++|+..-
T Consensus 102 K~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~I 150 (266)
T PF04821_consen 102 KEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAI 150 (266)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 34444445555555544221 122345777888888888874
No 381
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=49.36 E-value=4.1e+02 Score=29.54 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=57.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhcc------CCHHHHHHHHHHHHHHcCCc
Q 003227 643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS------EAEDVHETAAGALWNLAFNP 716 (837)
Q Consensus 643 i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s------~~~~v~~~a~~~L~~l~~~~ 716 (837)
++.++..|-+. .........+-.++.|++.+.-... ++..|.++|.+ .+..+.+.|+..+..+....
T Consensus 215 l~~~i~vLCsi-~~~~~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 215 LSPCIEVLCSI-VNSVSLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred HHHHHHHHhhH-hcccccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 33444444331 1333666677778888776543322 46677888832 23556667777777765433
Q ss_pred --ccHHHHHHc--CCHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 003227 717 --GNALRIVEE--GGVPALVHLCSSSGSKMARFMAALALAYMF 755 (837)
Q Consensus 717 --~~~~~i~~~--~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~ 755 (837)
.....+--. -.++.+...++.++ +.+-......+..+.
T Consensus 288 ~~~~~~~l~~~~~~vl~sl~~al~~~~-~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 288 GEQGYPSLPFSPSSVLPSLLNALKSNS-PRVDYEILLLINRLL 329 (464)
T ss_pred ccCCcceecccHHHHHHHHHHHHhCCC-CeehHHHHHHHHHHH
Confidence 111121111 25777777777654 445555556666555
No 382
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=49.28 E-value=96 Score=31.76 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=50.3
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHH--HHHHcCCHHHHHHHHhhc---------CCCCHHHHHHHHHHH
Q 003227 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRE--AIAAAGGVEALVVLAQSC---------SNASPGLQERAAGAL 668 (837)
Q Consensus 600 ~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~--~l~~~g~i~~L~~ll~~~---------~~~~~~v~~~A~~~L 668 (837)
-++|+++.++.+.++.++..++.+|..+..+.+... .+.+.|..+.+.+.+..+ .+++..+-..|.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 367999999999999999999999999887633322 355566666555544321 124555666777777
Q ss_pred Hhcc
Q 003227 669 WGLS 672 (837)
Q Consensus 669 ~~l~ 672 (837)
..+.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7764
No 383
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=48.22 E-value=8.2 Score=21.70 Aligned_cols=9 Identities=22% Similarity=0.010 Sum_probs=3.9
Q ss_pred ccccccccc
Q 003227 280 LKVLCALNC 288 (837)
Q Consensus 280 L~~l~l~~c 288 (837)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
No 384
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=47.08 E-value=4.5e+02 Score=29.27 Aligned_cols=252 Identities=12% Similarity=0.001 Sum_probs=125.4
Q ss_pred ChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHH
Q 003227 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDL 518 (837)
Q Consensus 441 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~l 518 (837)
..+.|..+...|..+....+.+.... -..+.+.+.. ..++.-..-+.+|..|+.+ .+. ...+.+..+.|...
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~w 115 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGLM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSW 115 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHHH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHH
Confidence 45678888888888776332210000 1122333333 3343344556677777753 233 22455566666665
Q ss_pred HHhhC------------------------CCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 003227 519 IFKWS------------------------SGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQE 573 (837)
Q Consensus 519 L~~~~------------------------~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~ 573 (837)
+.... +.+.......+..+.|+..- ...-..-.-.+.+..++.+....+.++...
T Consensus 116 l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~ 195 (464)
T PF11864_consen 116 LEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIE 195 (464)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 53200 00112222333344444431 111111111234555566655544455556
Q ss_pred HHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCC--CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHh
Q 003227 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS--PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQ 651 (837)
Q Consensus 574 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~ 651 (837)
.+..++-.+...+.-.. +.++.++..|-+ ...+....+-.++.||....... .++..|..+|.
T Consensus 196 ~~L~vldaii~y~~iP~---------~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~------~~i~~L~~iL~ 260 (464)
T PF11864_consen 196 ACLSVLDAIITYGDIPS---------ESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH------SAIRTLCDILR 260 (464)
T ss_pred HHHHHHHHHHHcCcCCh---------HHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH------HHHHHHHHHHc
Confidence 77777766665432211 333444444322 12256667778888887653322 24677888883
Q ss_pred hc---CCCCHHHHHHHHHHHHhcccCc--cchhhhhccC--ChHHHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 652 SC---SNASPGLQERAAGALWGLSVSE--ANCIAIGREG--GVAPLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 652 ~~---~~~~~~v~~~A~~~L~~l~~~~--~~~~~l~~~~--~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
+. ...+..+-.-|+..+..+.... ..-..+--.- .++.+...++.+++.+-...+..+.++-
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 20 1234455556777777665432 2222222222 5677777787777666666666666665
No 385
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=45.21 E-value=6.4e+02 Score=33.36 Aligned_cols=207 Identities=14% Similarity=0.072 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHhhccC----ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcH
Q 003227 481 MNRLVAEEAAGGLWNLSVG----EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGV 556 (837)
Q Consensus 481 ~~~~~~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i 556 (837)
++..+...|+..|..++.. ++....-.+...+.++..++. ++.+.++++.++.++.++..... .-++. +.
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~--~s~~~eVrE~ILeCv~qmI~s~~---~nIkS-GW 1222 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMR--KSNAVEIRELIIRCVSQMVLSRV---NNVKS-GW 1222 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHH---hhhhc-Cc
Confidence 3567778888888887752 221111223345677888776 46778999999999998865211 11122 45
Q ss_pred HHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCC-CCc-ccchhhccchHHHHHHHcCCC-CHHHHHHHHHHHHhhcCC
Q 003227 557 HALVMLAR---SCKFEGVQEQAARALANLAAHGDS-NSN-NSAVGQEAGALEALVQLTRSP-HEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 557 ~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~-~~~-~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~ 630 (837)
+.++.++. ....+.+...|-.++..+....=. -+. ....+ ...|..+..+.... +.++-..|+..|++++..
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 55555544 122366777777777766542100 000 00011 13344444444333 456666777777755211
Q ss_pred h----------------------------hhHH-----HHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--c
Q 003227 631 D----------------------------RNRE-----AIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--E 675 (837)
Q Consensus 631 ~----------------------------~~~~-----~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~--~ 675 (837)
- +... .......++.|..+-.-..+..++||..|+..|-.+-.. .
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 0 0000 000123455555553333358999999999998776531 2
Q ss_pred cchhhhhc---cCChHHHHHHhc
Q 003227 676 ANCIAIGR---EGGVAPLIALAR 695 (837)
Q Consensus 676 ~~~~~l~~---~~~i~~L~~lL~ 695 (837)
......++ .+.+.++.+.++
T Consensus 1381 ~Fs~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1381 LFSLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 245566655553
No 386
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=43.65 E-value=2.3e+02 Score=29.92 Aligned_cols=143 Identities=11% Similarity=-0.045 Sum_probs=79.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcC-------CHHHHHHHHHHHHhhccCccchH
Q 003227 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSM-------NRLVAEEAAGGLWNLSVGEEHKG 504 (837)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~-------~~~~~~~a~~~L~~l~~~~~~~~ 504 (837)
.+.+.+.+++...+..|+.. |..|+...+ -+|-+++.+.+. +.......+.++..|..++...-
T Consensus 182 ~It~a~~~~~~~~r~~aL~s---L~tD~gl~~------LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 182 EITEALVGSNEEKRREALQS---LRTDPGLQQ------LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHH---hccCCCchh------hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence 55555555666666554444 444442111 255555655432 46667778888888888875544
Q ss_pred HHHhhCCHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCC-HHHHHHHH
Q 003227 505 AIADAGGVKALVDLIFKW-------SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKF-EGVQEQAA 576 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~~-------~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~-~~~~~~a~ 576 (837)
...-...+|.++.++-.. ......+|..|+.+|..++..-...-.-....++..+.+.+.++.. ......|+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi 332 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI 332 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence 333334677777666321 1233578999999999998632111111122234566666655432 33356666
Q ss_pred HHHHHHh
Q 003227 577 RALANLA 583 (837)
Q Consensus 577 ~~L~~l~ 583 (837)
..|..+.
T Consensus 333 ~GL~~lG 339 (343)
T cd08050 333 VGLSALG 339 (343)
T ss_pred HHHHHhC
Confidence 6666654
No 387
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=42.48 E-value=33 Score=20.89 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc
Q 003227 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS 480 (837)
Q Consensus 443 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~ 480 (837)
.+|..|+.+|+++.... +++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~~~~----------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDEE----------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCHh----------HHHHHHHHhcC
Confidence 46888999999885433 46666666643
No 388
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=42.27 E-value=67 Score=27.59 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=31.8
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHH
Q 003227 686 GVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIV 723 (837)
Q Consensus 686 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~ 723 (837)
+++.|+.-|.+++++|...|..+|...+.++.....++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 57888999999999999999999999998775554444
No 389
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=39.62 E-value=3.9e+02 Score=27.32 Aligned_cols=73 Identities=16% Similarity=0.070 Sum_probs=51.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhccCccc--hHHHHhhCCHHHHHHHHHhh---------CCCCHHHHHHHHHHHH
Q 003227 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEH--KGAIADAGGVKALVDLIFKW---------SSGGDGVLERAAGALA 538 (837)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~l~~~g~i~~L~~lL~~~---------~~~~~~~~~~a~~~L~ 538 (837)
.+|.++.++.+.++.++..++.+|..+...-.. ...+...|..+.+-+.+... ..++..+...|..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 389999999999999999999999999874322 23466676666665555431 1344567777777777
Q ss_pred Hhhc
Q 003227 539 NLAA 542 (837)
Q Consensus 539 ~l~~ 542 (837)
.|..
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7743
No 390
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=39.49 E-value=1.1e+03 Score=31.48 Aligned_cols=170 Identities=9% Similarity=0.046 Sum_probs=95.5
Q ss_pred HHHhhhcCcCchhhHHHh--hhH-HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHH
Q 003227 361 LLRTAESNPQGLDDFWLK--QGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA 437 (837)
Q Consensus 361 l~~l~~~~~~~~~~~~~~--~~i-~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL 437 (837)
+.+++..|......+|.. .-+ +.+++.-.+.+.++...|...|..++..-.+.. +....=.+...+.++..++
T Consensus 1116 LveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~e----EL~~f~FQkefLkPfe~im 1191 (1780)
T PLN03076 1116 IVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLERE----ELANYNFQNEFMKPFVIVM 1191 (1780)
T ss_pred HHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchh----hhhchhHHHHHHHHHHHHH
Confidence 444555555555555531 112 334444344567788999998888775333210 1000112334567888877
Q ss_pred hc-CChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHh----cCCHHHHHHHHHHHHhhccCccchHHHHh--hC
Q 003227 438 KS-WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR----SMNRLVAEEAAGGLWNLSVGEEHKGAIAD--AG 510 (837)
Q Consensus 438 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--~g 510 (837)
.+ .+.+++...++++.++..... ..| +. |.+.++.++. +.++.+.+.|-.++..+..+- -..+.. .+
T Consensus 1192 ~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~--f~~l~~~~~~ 1265 (1780)
T PLN03076 1192 RKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY--FPYITETETT 1265 (1780)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh--hhhccccchh
Confidence 65 588999999999998875221 122 22 7777777775 357788888888888776431 011111 12
Q ss_pred CHHHHHHHHHhhC--CCCHHHHHHHHHHHHHh
Q 003227 511 GVKALVDLIFKWS--SGGDGVLERAAGALANL 540 (837)
Q Consensus 511 ~i~~L~~lL~~~~--~~~~~~~~~a~~~L~~l 540 (837)
.+..++..+..|. ..+.++--.|+..|+++
T Consensus 1266 ~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1266 TFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 3333444443322 22345556777777755
No 391
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=39.06 E-value=1.1e+03 Score=32.34 Aligned_cols=113 Identities=14% Similarity=0.043 Sum_probs=70.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccc-hhhhhccCChHHHHHHhc-cCCHHHHHHHHHHHHHHcCCccc--
Q 003227 643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN-CIAIGREGGVAPLIALAR-SEAEDVHETAAGALWNLAFNPGN-- 718 (837)
Q Consensus 643 i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~-~~~l~~~~~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~-- 718 (837)
...++..+.+ .+..+...++.++..||..... -....+ ..++.+.+.+. .++..-+.++.+++.++.....-
T Consensus 650 l~~~~~~~~~---~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v 725 (2341)
T KOG0891|consen 650 LLVLLPKLQD---PSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVV 725 (2341)
T ss_pred HHHHHHHHhc---cchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEe
Confidence 3455555655 6667777888888888754321 111122 34555666664 45667788899999999864321
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 719 ALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 719 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.........+..|+..+.......++..+...+++++...+
T Consensus 726 ~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 726 DPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred cccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 11112234456777777777777788888888887776655
No 392
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.93 E-value=8e+02 Score=30.97 Aligned_cols=99 Identities=8% Similarity=0.035 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhhcCC--CchHHHHhcC
Q 003227 481 MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWS----SGGDGVLERAAGALANLAADD--KCSMEVALAG 554 (837)
Q Consensus 481 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~----~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g 554 (837)
+..+++...+.++.++...+... .-.| -+...++++... .....+.+.+-.+|+-++.|- ..-. =.-.+
T Consensus 854 ~~~evr~~sl~~l~silet~ge~---ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~-sci~~ 928 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEH---LLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPT-SCILD 928 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchh---hccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCCh-HHHHH
Confidence 56667777777777776543111 0011 223333332211 113345555666666665431 1111 11135
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 555 GVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
.|+.++.+-....|..+.-.|++.+++++.
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 677777777766667777888888888775
No 393
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.87 E-value=48 Score=29.68 Aligned_cols=72 Identities=15% Similarity=-0.007 Sum_probs=54.4
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHHcCCc--ccHHHHHHcCCHHHHHHHHhcCCcHH---HHHHHHHHHHHhhCC
Q 003227 686 GVAPLIALARSEAEDVHETAAGALWNLAFNP--GNALRIVEEGGVPALVHLCSSSGSKM---ARFMAALALAYMFDG 757 (837)
Q Consensus 686 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~--~~~~~i~~~~~i~~L~~ll~~~~~~~---~~~~a~~aL~~l~~~ 757 (837)
++..|.+-|.++++.++..|+.+|-.+..+- .-+..+....-+..|..++.+..... |+..+...+..+...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4556667788899999999999999888643 34455555666788999887765454 899999888887654
No 394
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=38.43 E-value=3.1e+02 Score=32.64 Aligned_cols=142 Identities=16% Similarity=0.065 Sum_probs=83.2
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh-hh
Q 003227 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD-RN 633 (837)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~ 633 (837)
....+...+..++ .......+.++.+++.-....+.. ....++.-..-....-..+......+|..++..+ +.
T Consensus 442 lW~~l~~~~~~~~-~~la~~lL~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~ 515 (727)
T PF12726_consen 442 LWKALLKSLDSDN-PDLAKALLKSLSPLIGLEKFPPKK-----EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSH 515 (727)
T ss_pred HHHHHHHhhcCCC-hHHHHHHHHHHHHhccccccCCcc-----cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3455666666443 677777788888877542211111 0111111111111122345666778888888873 33
Q ss_pred -HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHH
Q 003227 634 -REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNL 712 (837)
Q Consensus 634 -~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l 712 (837)
...+.+.++...++.++-+ ++.++.++|...|..... .+. -.+.+-.+++..-.........+|.++
T Consensus 516 L~~l~~d~~~~~~i~s~lfs---p~~~l~qaA~~llk~~~d-~~~--------R~e~i~~ll~~~~~~tL~ai~~~l~~~ 583 (727)
T PF12726_consen 516 LKELLSDPDAAQAIWSLLFS---PDDDLYQAAQDLLKQAFD-VDG--------RLEAIQALLQSNFSPTLSAINWSLRQL 583 (727)
T ss_pred HHHHHcCcchhhHHHhheeC---CChHHHHHHHHHHHHHhc-CCc--------HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5555567899999999987 999999999999988663 222 233444455444444555555666655
Q ss_pred cC
Q 003227 713 AF 714 (837)
Q Consensus 713 ~~ 714 (837)
..
T Consensus 584 ~~ 585 (727)
T PF12726_consen 584 TK 585 (727)
T ss_pred Hh
Confidence 54
No 395
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=38.33 E-value=3e+02 Score=24.71 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=55.5
Q ss_pred chHHHHHHHcC-CCCHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHH-HHHHHhhcCCCCHHHHHHHHHHHHhccc
Q 003227 600 GALEALVQLTR-SPHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEA-LVVLAQSCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 600 ~~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~-L~~ll~~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
.++..|.+-+. +.++.++..|+..|-.+..+ ......+...+.+.. |+.++......+..|+...+..+..++.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45666666666 45888888899888888877 344677777888887 8999864122456899999999998874
No 396
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.18 E-value=5.9e+02 Score=28.47 Aligned_cols=145 Identities=11% Similarity=-0.038 Sum_probs=84.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc--------CCHHHHHHHHHHHHhhccCccc
Q 003227 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--------MNRLVAEEAAGGLWNLSVGEEH 502 (837)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~~~~~a~~~L~~l~~~~~~ 502 (837)
..+.+.+-++++..+..|+..|. .|+.... -+|.++.++.. .+..........++.|..++..
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~---TDsGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLE---TDSGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhc---cCccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 46677777788888887766663 3331110 13444455432 3566777888888899888754
Q ss_pred hHHHHhhCCHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcC-CCHHHHHH
Q 003227 503 KGAIADAGGVKALVDLIFK-------WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC-KFEGVQEQ 574 (837)
Q Consensus 503 ~~~l~~~g~i~~L~~lL~~-------~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~ 574 (837)
.-.-.-...+|.++.++-. +.+....++.-|+..+..++.+-...-.-....++..+.+.+.+. .+....+.
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 4333333356777666532 123344678888888888876433221113344566777766554 34555666
Q ss_pred HHHHHHHHhc
Q 003227 575 AARALANLAA 584 (837)
Q Consensus 575 a~~~L~~l~~ 584 (837)
++..|..+..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 6666666654
No 397
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.60 E-value=8.6e+02 Score=29.87 Aligned_cols=133 Identities=13% Similarity=0.064 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHH--HHcCCHHH
Q 003227 568 FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAI--AAAGGVEA 645 (837)
Q Consensus 568 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l--~~~g~i~~ 645 (837)
.++++..|+..|+.-... .| ..+.+...+..+-=.|.+.+.+||..++.+|..|..+++....+ .-...=..
T Consensus 300 ~~~IRaiCiqeLgiWi~~---yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKS---YP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred chHHHHHHHHHHHHHHHh---cc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 378888888777766553 22 45666677777777788999999999999999998885443222 22345556
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 646 LVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 646 L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
++++. . .+.+..|+..++..+...... .+....-+..+..++-+.+++++.+|...|..=.
T Consensus 374 IVeMa-d-rd~~~~Vrav~L~~~~~~~~~-----g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 374 IVEMA-D-RDRNVSVRAVGLVLCLLLSSS-----GLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHH-h-hhcchhHHHHHHHHHHHHhcc-----cccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 67776 2 236666776665555443221 1333445677888888889999888888877543
No 398
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.55 E-value=1.4e+02 Score=31.38 Aligned_cols=61 Identities=20% Similarity=0.124 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcC--CHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCc
Q 003227 615 GVRQEAAGALWNLSFDDRNREAIAAAG--GVEALVVLAQSCSNASPGLQERAAGALWGLSVSE 675 (837)
Q Consensus 615 ~~~~~a~~~L~~Ls~~~~~~~~l~~~g--~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~ 675 (837)
.+|..|+..+..+...+.....+...+ .+..|++++.....-...++..|+.+|..++...
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 355566667766666677777777776 8999999998755567889999999999998653
No 399
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=37.24 E-value=4.4e+02 Score=26.35 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=52.0
Q ss_pred HHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHH--HcCCHHHHHHHHhcC--CHHHHHHHHHHHHhhcc
Q 003227 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVA--EEGGINILAVLARSM--NRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 423 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~ 498 (837)
.+.+..++++++++++.++.-+- ..++.... ++.-..+. -.|-++.|.+++.++ +.-++..|+.+|..++.
T Consensus 68 q~re~~A~~~li~l~~~~~~~~~----~l~GD~~t-E~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~ 142 (249)
T PF06685_consen 68 QFREERALPPLIRLFSQDDDFLE----DLFGDFIT-EDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVH 142 (249)
T ss_pred HHhhhhhHHHHHHHHcCCcchHH----HHHcchhH-hHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 46778899999999987654211 11111111 12222222 234588999999876 56689999999999986
Q ss_pred -CccchHHHHhh
Q 003227 499 -GEEHKGAIADA 509 (837)
Q Consensus 499 -~~~~~~~l~~~ 509 (837)
++.-|..+++.
T Consensus 143 ~~~~~Re~vi~~ 154 (249)
T PF06685_consen 143 EGPISREEVIQY 154 (249)
T ss_pred cCCCCHHHHHHH
Confidence 45556666553
No 400
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.12 E-value=7.3e+02 Score=31.68 Aligned_cols=205 Identities=10% Similarity=-0.019 Sum_probs=127.6
Q ss_pred HHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHH-HHHHHcCCHHHHHHHHhc----CCHHHHHHHHH---HHH
Q 003227 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVA-KAVAEEGGINILAVLARS----MNRLVAEEAAG---GLW 494 (837)
Q Consensus 423 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~g~i~~L~~lL~~----~~~~~~~~a~~---~L~ 494 (837)
.+++.|....+..-+.+.|+.++..|.+++...-.+.+++ +.+...-++..++.+.+. +++++-....- -..
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 5778889999999999999999999988888776655553 444444455555555543 23332211111 111
Q ss_pred hhccCc--cc---------hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHH
Q 003227 495 NLSVGE--EH---------KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA 563 (837)
Q Consensus 495 ~l~~~~--~~---------~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll 563 (837)
++...| .+ ...+.+..++|.+=+++.+...+....+......+...-.+....+.....+....++.+.
T Consensus 1514 ~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~ 1593 (1758)
T KOG1791|consen 1514 DILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFY 1593 (1758)
T ss_pred HHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhh
Confidence 222222 11 1345667788888888876444445577777777777777666666677777877777777
Q ss_pred hcCC-CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC--CHHHHHH-HHHHHHhhcCC
Q 003227 564 RSCK-FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP--HEGVRQE-AAGALWNLSFD 630 (837)
Q Consensus 564 ~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~-a~~~L~~Ls~~ 630 (837)
.++= +...+.....+|++-... ......++...|....+.+++.++ .+-.... ....+.++-..
T Consensus 1594 sS~l~~~~S~~LIL~~L~~~Vk~---p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~a 1661 (1758)
T KOG1791|consen 1594 SSPLASEESKRLILATLQKGVKF---PFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVA 1661 (1758)
T ss_pred cchhHHHHHHHHHHHHHHhcCCC---cHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHh
Confidence 6531 133444555555555443 345566777889999999999876 4444444 44555555443
No 401
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=36.05 E-value=6.4e+02 Score=27.94 Aligned_cols=236 Identities=15% Similarity=0.039 Sum_probs=123.9
Q ss_pred CHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC----CC-------chHHHHhcCcHHHHHHHHhc----CC---CHHHH
Q 003227 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAAD----DK-------CSMEVALAGGVHALVMLARS----CK---FEGVQ 572 (837)
Q Consensus 511 ~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~----~~-------~~~~l~~~g~i~~L~~ll~~----~~---~~~~~ 572 (837)
.|..+.+++. .++...++.++++.|++|-.. .. .-..+-+...|...+.++-. ++ .+...
T Consensus 98 vir~ltqvis--~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 98 VIRTLTQVIS--FSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHc--CccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 4666677775 567778899999999987421 11 11223344556666666643 22 13333
Q ss_pred HHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhh
Q 003227 573 EQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQS 652 (837)
Q Consensus 573 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~ 652 (837)
..+...+.......+-.+-|.. -++.+|+++ +..++++..++.....=+....+...++..-..++++.-+..
T Consensus 176 kvvl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~ 248 (589)
T PF11229_consen 176 KVVLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSV 248 (589)
T ss_pred HHHHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhH
Confidence 4444444444333222333332 234566665 346788888876665555556666777777677777665543
Q ss_pred cCCCCHHHHHHHHHHHHhcccC-ccc-hhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHH--cCCH
Q 003227 653 CSNASPGLQERAAGALWGLSVS-EAN-CIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE--EGGV 728 (837)
Q Consensus 653 ~~~~~~~v~~~A~~~L~~l~~~-~~~-~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~--~~~i 728 (837)
..+..-...+..+... ++. -+.+.+.-++..+-..-+-.++++...++.-|..-...|.-...... ....
T Consensus 249 ------~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~tt 322 (589)
T PF11229_consen 249 ------NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETT 322 (589)
T ss_pred ------HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 4444444444444432 222 23333332222222222235567777777666664444433333333 4456
Q ss_pred HHHHHHHhcC---CcHHHHHHHHHHHHHhhCCCCcc
Q 003227 729 PALVHLCSSS---GSKMARFMAALALAYMFDGRMDE 761 (837)
Q Consensus 729 ~~L~~ll~~~---~~~~~~~~a~~aL~~l~~~~~~~ 761 (837)
..+.+++-+. +.-......+.+|..+.++..++
T Consensus 323 ekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~eidr 358 (589)
T PF11229_consen 323 EKIFDLLPNKIQRNEVELYIGVAKCLSEMTDTEIDR 358 (589)
T ss_pred HHHHHhCcccccHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 6666666432 12334455677777776654443
No 402
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=35.63 E-value=5.3e+02 Score=26.84 Aligned_cols=103 Identities=15% Similarity=-0.041 Sum_probs=58.9
Q ss_pred cCChhHHHHHHHHHHHhcc-ChHHHHHHHHc------CC------HHHHHHHHhc-----CCHHHHHHHHHHHHhhc-cC
Q 003227 439 SWREGLQSEAAKAIANLSV-NAKVAKAVAEE------GG------INILAVLARS-----MNRLVAEEAAGGLWNLS-VG 499 (837)
Q Consensus 439 ~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~------g~------i~~L~~lL~~-----~~~~~~~~a~~~L~~l~-~~ 499 (837)
+.|+.-.+.|+.+|..+.. +++.|+...+. .| ++.+..+|-. .++.++-.-+..|.--. .+
T Consensus 108 ~~dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~ 187 (312)
T PF04869_consen 108 SLDPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFEC 187 (312)
T ss_dssp SS-HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCC
Confidence 4466667889999999888 56667666543 11 5556665533 35555544444444333 35
Q ss_pred ccchHHHHhh-CCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 003227 500 EEHKGAIADA-GGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (837)
Q Consensus 500 ~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~ 541 (837)
+.....+... +.++.|++......+.+.-++-.++..|+-.-
T Consensus 188 p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 188 PDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Confidence 5555555555 46999999875545566666666666665444
No 403
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.66 E-value=3.5e+02 Score=28.62 Aligned_cols=95 Identities=11% Similarity=-0.025 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhcc----------CCHHHHHHHHHHHHHHcC-----CcccHHH
Q 003227 657 SPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS----------EAEDVHETAAGALWNLAF-----NPGNALR 721 (837)
Q Consensus 657 ~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s----------~~~~v~~~a~~~L~~l~~-----~~~~~~~ 721 (837)
+...-...+.+...|..++...-...-+-.++.++..+-+ .+..+|..|+..|..++. ++..+.+
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~r 309 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPR 309 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 3444555566666666666554433334467777766621 235899999999999986 2333334
Q ss_pred HHHcCCHHHHHHHHhcCC-cHHHHHHHHHHHHHhhC
Q 003227 722 IVEEGGVPALVHLCSSSG-SKMARFMAALALAYMFD 756 (837)
Q Consensus 722 i~~~~~i~~L~~ll~~~~-~~~~~~~a~~aL~~l~~ 756 (837)
+.+ .+.+.+.++. .......|..+|..++.
T Consensus 310 i~~-----tl~k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 310 ITR-----TLLKALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHH-----HHHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence 433 6776666554 33347888888888864
No 404
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=34.29 E-value=63 Score=28.99 Aligned_cols=27 Identities=37% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 003227 471 INILAVLARSMNRLVAEEAAGGLWNLS 497 (837)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~~l~ 497 (837)
|++|+.+|.+.+..+...|+.+|.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 788888888778888888888887655
No 405
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.13 E-value=2.4e+02 Score=31.39 Aligned_cols=81 Identities=15% Similarity=0.043 Sum_probs=51.3
Q ss_pred hHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC----------CcccchhhccchHHHHHHHcCC-CCHH
Q 003227 547 SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN----------SNNSAVGQEAGALEALVQLTRS-PHEG 615 (837)
Q Consensus 547 ~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~----------~~~~~~~~~~~~i~~L~~lL~~-~~~~ 615 (837)
...+.+.+.|+.|+.+|....+.+++..|+..|..+...+... ......+.+...+..|+..+-. ....
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s 134 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGS 134 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcc
Confidence 3455678999999999987667889999998888885532111 1122334456667777766432 3344
Q ss_pred HHHHHHHHHHhh
Q 003227 616 VRQEAAGALWNL 627 (837)
Q Consensus 616 ~~~~a~~~L~~L 627 (837)
....++.++..|
T Consensus 135 ~lvn~v~IlieL 146 (475)
T PF04499_consen 135 SLVNGVSILIEL 146 (475)
T ss_pred hHHHHHHHHHHH
Confidence 555566555544
No 406
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=33.63 E-value=34 Score=28.71 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHH
Q 003227 663 RAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHE 703 (837)
Q Consensus 663 ~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~ 703 (837)
.+...+..++..|+.-..+++.|+++.|+.+|.+.+.++..
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 46667888888888888999999999999999888776643
No 407
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=33.40 E-value=1.9e+02 Score=25.64 Aligned_cols=130 Identities=20% Similarity=0.143 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC---------hhh-HHH--
Q 003227 569 EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD---------DRN-REA-- 636 (837)
Q Consensus 569 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~---------~~~-~~~-- 636 (837)
+-++...+.++..++... .++.. ...++.+++++.. ++........+|..+... ... +..
T Consensus 2 ~~i~~kl~~~l~~i~~~~--~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~ 73 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRD--WPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELK 73 (148)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH--ChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHH
Confidence 345666777777777642 11111 2567888888777 355555566666554332 111 111
Q ss_pred --HHH--cCCHHHHHHHHhhcCCCC-HHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHH
Q 003227 637 --IAA--AGGVEALVVLAQSCSNAS-PGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGAL 709 (837)
Q Consensus 637 --l~~--~g~i~~L~~ll~~~~~~~-~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L 709 (837)
+.+ ...++.+.+.+....... ..+...+..++..+..-. .-..+...+.++.+.+++.+ +..+..|+.+|
T Consensus 74 ~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 74 DALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI-PIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 222 234555555665522222 788889999999887632 22345556688888888843 44477777664
No 408
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=33.36 E-value=53 Score=33.72 Aligned_cols=27 Identities=26% Similarity=0.139 Sum_probs=12.9
Q ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 003227 174 IALCCPKLKKLRLSGIRDICGDAINALA 201 (837)
Q Consensus 174 l~~~~~~L~~L~l~~~~~i~~~~~~~l~ 201 (837)
+.+.++.|++|++.+. .||..++..+.
T Consensus 250 ml~~n~sl~slnvesn-FItg~gi~a~~ 276 (353)
T KOG3735|consen 250 MLKENKSLTSLNVESN-FITGLGIMALL 276 (353)
T ss_pred HHhhcchhhheecccc-ccccHHHHHHH
Confidence 3344455555555554 45555444443
No 409
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=33.26 E-value=6.7e+02 Score=27.32 Aligned_cols=70 Identities=11% Similarity=0.011 Sum_probs=40.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 003227 470 GINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (837)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~ 542 (837)
-+..|+.++.++|+.-|.....+|.++-.. ...+..+ .......+.+.+.. .....-....+.+++.+..
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I-r~~i~~~~~~fi~e--~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI-RKSINNIFYRFIYE--TERHNGIAELLEILGSIIN 204 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH-HHHHHHHHHHHHHT--TS--STHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcC--cccccCHHHHHHHHHHHHh
Confidence 467788888889999998888888887653 3333333 33344455555542 2223333444555555543
No 410
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=31.01 E-value=4e+02 Score=24.09 Aligned_cols=58 Identities=33% Similarity=0.294 Sum_probs=33.4
Q ss_pred HHHhhccccccCcccccchhhHHHHHH--hCc--HHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 003227 400 ATGLATFVVINDENASIDCGRAEAVMK--DGG--IRLLLDLAKSWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 400 ~~~L~~l~~~~~~~~~~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (837)
+..|..++.+......+.+.....+.. .|| |+.||.+|.++|+++...|+.+|.+...
T Consensus 62 A~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 62 AEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 445666665555444443433333321 232 7899999999999999999999988554
No 411
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=30.92 E-value=5.5e+02 Score=25.64 Aligned_cols=94 Identities=22% Similarity=0.184 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHH--------HHHHHHHHHHhhccCccchHHHHhhCCHHHHH
Q 003227 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRL--------VAEEAAGGLWNLSVGEEHKGAIADAGGVKALV 516 (837)
Q Consensus 445 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~--------~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~ 516 (837)
...|+..|+.+- +..+.+.++++++.++.. +-+....++..++ .|-++.|.
T Consensus 59 ~~~a~~LLaq~r----------e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~ 117 (249)
T PF06685_consen 59 HFYALYLLAQFR----------EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLK 117 (249)
T ss_pred HHHHHHHHHHHh----------hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHH
Confidence 345666664443 334799999999765432 2222223333333 34688888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHH
Q 003227 517 DLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVML 562 (837)
Q Consensus 517 ~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~l 562 (837)
+++.+ ..-+.-++..|+.+|..++.. +..|..+++ .+..++..
T Consensus 118 ~li~~-~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 118 ELIED-PDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHhC-CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHH
Confidence 99976 445567888999999999984 555666643 24444443
No 412
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=30.06 E-value=51 Score=35.59 Aligned_cols=72 Identities=26% Similarity=0.165 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Q 003227 556 VHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 556 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
+..+++.+....++++++.|..++.+++.+ ++..+..+.+...-..+++++..+.+++-+.++.++..+..+
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~---~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFC---LENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGEN 400 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheec---ccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhh
Confidence 334444444455699999999999999996 343444444555666778888888888888888888777653
No 413
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=29.44 E-value=6e+02 Score=25.62 Aligned_cols=164 Identities=14% Similarity=0.030 Sum_probs=92.7
Q ss_pred ChhHHHHHHHHHHHhccCh--------HHHHHHHHcCCHHHHHHHHhcCC----HHHHHHHHHHHHhhccCccchHHHHh
Q 003227 441 REGLQSEAAKAIANLSVNA--------KVAKAVAEEGGINILAVLARSMN----RLVAEEAAGGLWNLSVGEEHKGAIAD 508 (837)
Q Consensus 441 ~~~~~~~a~~~L~~l~~~~--------~~~~~i~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~l~~ 508 (837)
.+.....++..|..++.-+ +.|-.+.=.+.+|.++.-+..++ ......++..|..++... .
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-------~ 147 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-------G 147 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-------C
Confidence 3455667777777776522 12333333334666666665555 133345667777777432 1
Q ss_pred hCCHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Q 003227 509 AGGVKALVDLIFK-WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (837)
Q Consensus 509 ~g~i~~L~~lL~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (837)
...+..++..... ......+....++..|+.-.. ++. +...+..|+.++.++. +.++..+..+|..+-.+-+
T Consensus 148 ~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~-~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 148 LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGP-PWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhcccc
Confidence 1233333333322 123344566666666554321 111 1234667888998876 8999999999999987643
Q ss_pred CCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHh
Q 003227 588 SNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWN 626 (837)
Q Consensus 588 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~ 626 (837)
-.. . ...+.+.++.++++++. -..|+.+|-+
T Consensus 221 ~~~---~--~~~dlispllrlL~t~~---~~eAL~VLd~ 251 (262)
T PF14225_consen 221 MRS---P--HGADLISPLLRLLQTDL---WMEALEVLDE 251 (262)
T ss_pred CCC---C--cchHHHHHHHHHhCCcc---HHHHHHHHHH
Confidence 221 1 45678999999998764 3344455543
No 414
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=29.38 E-value=5.6e+02 Score=25.19 Aligned_cols=131 Identities=13% Similarity=0.001 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh--CCC--------CH-----HHHHHHHHHHHHhhcCCCch
Q 003227 483 RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW--SSG--------GD-----GVLERAAGALANLAADDKCS 547 (837)
Q Consensus 483 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~--~~~--------~~-----~~~~~a~~~L~~l~~~~~~~ 547 (837)
......++..+..|...++....+.+.+.++.+.+.|.+. .++ ++ .+-..=...|+.++.++...
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4455667777788888777777777778888888887653 111 11 11222346778888888888
Q ss_pred HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH-HHHHHcCCCCHHHHHHHHHHHHh
Q 003227 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE-ALVQLTRSPHEGVRQEAAGALWN 626 (837)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~-~L~~lL~~~~~~~~~~a~~~L~~ 626 (837)
..+-+.+....+..+....+.+++. ...+.++-.. . .|-.. .|-..|..++..+|..|..-|..
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~~l~---klil~~LDY~----~--------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ 222 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRDDLL---KLILSSLDYS----V--------DGHPRIILSKALTSGSESIRLYATKHLRV 222 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchHHHH---HHHHhhCCCC----C--------ccHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888889999999999876433332 2345555321 1 23333 34466888999999999988876
Q ss_pred hc
Q 003227 627 LS 628 (837)
Q Consensus 627 Ls 628 (837)
+.
T Consensus 223 ll 224 (226)
T PF14666_consen 223 LL 224 (226)
T ss_pred Hh
Confidence 54
No 415
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=29.01 E-value=2.8e+02 Score=24.82 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=52.1
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHH-HHHHHhc---CCHHHHHHHHHHHHhhcc
Q 003227 430 IRLLLDLAKS-WREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINI-LAVLARS---MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 430 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~-L~~lL~~---~~~~~~~~a~~~L~~l~~ 498 (837)
+..|-+-|.+ .++.++..|+..|-.+.. .......|+..+-+.. |++++.. ....|+..++..+..-+.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3455555654 589999999999999887 4567788888888887 8899863 345788888888877663
No 416
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=28.82 E-value=45 Score=19.42 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=7.1
Q ss_pred CCccEEEeccCCC
Q 003227 253 PKLVGLDVSRTDV 265 (837)
Q Consensus 253 ~~L~~L~l~~~~i 265 (837)
++|+.|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3456666665543
No 417
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=28.82 E-value=45 Score=19.42 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=7.1
Q ss_pred CCccEEEeccCCC
Q 003227 253 PKLVGLDVSRTDV 265 (837)
Q Consensus 253 ~~L~~L~l~~~~i 265 (837)
++|+.|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3456666665543
No 418
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=28.43 E-value=5.1e+02 Score=24.43 Aligned_cols=72 Identities=15% Similarity=-0.004 Sum_probs=46.6
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC
Q 003227 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 600 ~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
-.++.+++=|+..+..-+-.|...+..|-.. ...+-.=+=...+.++-..|.+ .++++...++.+|..+..+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t---r~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT---RDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666544 2222111223456677777776 9999999999999998543
No 419
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=27.83 E-value=4.9e+02 Score=27.85 Aligned_cols=130 Identities=15% Similarity=0.006 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhhcCCCch------------
Q 003227 483 RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF---KWSSGGDGVLERAAGALANLAADDKCS------------ 547 (837)
Q Consensus 483 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~---~~~~~~~~~~~~a~~~L~~l~~~~~~~------------ 547 (837)
...+.+|+..|..++.... +.+ ..-....+-.++. .....+..-+..|+..+..++......
T Consensus 225 ~TrR~AA~dfl~~L~~~~~--~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFE--KQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred CCcHHHHHHHHHHHHHHHh--HHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 3456678888888875311 111 1101112222332 224566778889999999998744221
Q ss_pred -HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHH
Q 003227 548 -MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGAL 624 (837)
Q Consensus 548 -~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L 624 (837)
..+...-++|.|. -.....+-++..|++.+...-.. -+ ... -.++++.++++|.+++.-|...|+.++
T Consensus 302 v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~---l~--~~~--l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ---LP--KEQ--LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG---S---HHH--HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh---CC--HHH--HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2222222233222 11122355666777777666543 11 122 246899999999999998998888764
No 420
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=27.73 E-value=2e+02 Score=21.16 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=35.9
Q ss_pred HHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 709 LWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 709 L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
|..|+.....|..+.+.|+.+.|-.+-....++.++...-....-|..+.+
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~ 52 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEP 52 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 556777778888888887777776666555568787777776666665543
No 421
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=27.55 E-value=2.8e+02 Score=23.60 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=47.2
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHH------hcCCHHHHHHHHHHHHhh
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLA------RSMNRLVAEEAAGGLWNL 496 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL------~~~~~~~~~~a~~~L~~l 496 (837)
++..|..-|.+.++.++..|+..|-.+.. .+.....+.....+..++++. ...+..+++.+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 34566677788899999999999999987 456777777765555554431 123677888877766543
No 422
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.64 E-value=49 Score=34.06 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=51.9
Q ss_pred HHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHH--hcCCHHHHHHHHHHHHhhccCc-cchHHHHhh
Q 003227 447 EAAKAIANLSV-NAKVAKAVAEEGGINILAVLA--RSMNRLVAEEAAGGLWNLSVGE-EHKGAIADA 509 (837)
Q Consensus 447 ~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~ 509 (837)
+..+.++++++ .++++..+.+.||++.++.-. .+.+|-+++....++.+|..+. ++++.+.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 46778899988 789999999999999888654 4568999999999999999754 777766544
No 423
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=26.40 E-value=1.2e+02 Score=31.39 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCccEEEecCCCCCChHHh-------hCCCCCCEeeccCCCCCCH---HHHHHHHhcCCCccEEEeccC
Q 003227 194 GDAINALAKLCPNLTDIGFLDCLNVDEVAL-------GNVLSVRFLSVAGTSNMKW---GVVSQVWHKLPKLVGLDVSRT 263 (837)
Q Consensus 194 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l-------~~l~~L~~L~ls~~~~i~~---~~l~~~~~~~~~L~~L~l~~~ 263 (837)
++.+..+-..=|+|++..+.+...++...+ ..-...+...+.+. ..+| ..+......++.|++|++.++
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesn 265 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESN 265 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecccc
Confidence 344444444445666666666555554322 22233333333221 1111 223333455666666666666
Q ss_pred CCCHHHHHHHHh
Q 003227 264 DVGPITISRLLT 275 (837)
Q Consensus 264 ~i~~~~l~~l~~ 275 (837)
-|+..++..+..
T Consensus 266 FItg~gi~a~~~ 277 (353)
T KOG3735|consen 266 FITGLGIMALLR 277 (353)
T ss_pred ccccHHHHHHHH
Confidence 666666665544
No 424
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=26.03 E-value=3.3e+02 Score=28.60 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhhC--CHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHH
Q 003227 484 LVAEEAAGGLWNLSVGEEHKGAIADAG--GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (837)
Q Consensus 484 ~~~~~a~~~L~~l~~~~~~~~~l~~~g--~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l 550 (837)
.++-.|...+..+...+.....+...+ .+..|++++.....-...++..|+.+|..++.+..-...+
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 445566666666666667777777776 8899999997534445789999999999999855433333
No 425
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.56 E-value=1.2e+03 Score=27.80 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=70.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~ 460 (837)
..+...+.++++..-.....++..++.-..-.... ....++.-..-....-..+......+|..++. +++
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---------~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~ 514 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---------EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS 514 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---------cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 67788888888777666666666655433222110 00111122222222233556678888899988 666
Q ss_pred HHHHHH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 003227 461 VAKAVA-EEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 461 ~~~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~ 498 (837)
....+. +.+....++.++=+++.++...|...|.....
T Consensus 515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 555544 56679999999999999999999999999885
No 426
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=24.54 E-value=2.3e+02 Score=25.17 Aligned_cols=108 Identities=20% Similarity=0.131 Sum_probs=55.6
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCc--ccccchhhHH----HHHH--hCcHHHHHHHHhcCC----hhHHHHHH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDE--NASIDCGRAE----AVMK--DGGIRLLLDLAKSWR----EGLQSEAA 449 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~----~i~~--~g~i~~Lv~lL~~~~----~~~~~~a~ 449 (837)
+.+++.+++ ++........+|..+..+-.+ .......++. .+.+ ...++.+.+.+.... +++...++
T Consensus 29 ~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L 107 (148)
T PF08389_consen 29 EDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAAL 107 (148)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHH
T ss_pred HHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 566666655 344444555555554433221 1111111222 2222 222344444454432 78888999
Q ss_pred HHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Q 003227 450 KAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGL 493 (837)
Q Consensus 450 ~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L 493 (837)
.++.....-- ....+.+.+-++.+.+++..+ ..++.|+.+|
T Consensus 108 ~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 108 KCLKSWISWI-PIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHTTTS--HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHhC-CHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 9998877622 224455555688888888443 3366666654
No 427
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.39 E-value=1.3e+03 Score=27.64 Aligned_cols=141 Identities=12% Similarity=0.053 Sum_probs=70.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccc
Q 003227 515 LVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSA 594 (837)
Q Consensus 515 L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 594 (837)
++++-..|..++..++-..+++...--.+ .-...--...+..+.... +.+|+.-+..+...++.++.-
T Consensus 65 llrLaDaF~~Gn~llRf~V~rv~~q~g~h--ln~v~n~aE~lrri~~V~-hsnDp~aRAllL~ilg~~s~l--------- 132 (970)
T KOG1988|consen 65 LLRLADAFPVGNNLLRFAVLRVDQQSGKH--LNKVLNGAEFLRRIFYVD-HSNDPVARALLLRILGQLSAL--------- 132 (970)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHhhcccc--chhhhhhhhhhheeEEee-cCCCHHHHHHHHHHHHHhhhh---------
Confidence 44444444667777777777766532111 111111111222222222 344588888888888887653
Q ss_pred hhhccchHHHHHHH-cCCCCHHHHHHHHHHHHhhcCChhh-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 595 VGQEAGALEALVQL-TRSPHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 595 ~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
+-+...++.++.. +.++++---++|+.+..+.+...+. ..-+. |-+..+++.+. ..+..+-.+..++..+.
T Consensus 133 -ipEfn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA~si~--gkis~mIef~d----~~~~mkL~li~Vfs~M~ 205 (970)
T KOG1988|consen 133 -IPEFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFACSIC--GKISDMIEFLD----LPVPMKLSLIPVFSHMH 205 (970)
T ss_pred -cccccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhHHHHH--HHHHHHhhccc----CCCCcchhHhHHHHHhc
Confidence 2234455666655 5555444455566666666554221 11111 12333344332 34556666677777765
Q ss_pred cC
Q 003227 673 VS 674 (837)
Q Consensus 673 ~~ 674 (837)
.+
T Consensus 206 c~ 207 (970)
T KOG1988|consen 206 CH 207 (970)
T ss_pred ch
Confidence 43
No 428
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=24.37 E-value=97 Score=20.94 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=22.4
Q ss_pred hhccchHHHHHHHcCCCCHHHHHHHHHHH
Q 003227 596 GQEAGALEALVQLTRSPHEGVRQEAAGAL 624 (837)
Q Consensus 596 ~~~~~~i~~L~~lL~~~~~~~~~~a~~~L 624 (837)
+....+...+...+.++++.+|++|+.+|
T Consensus 14 l~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 14 LDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred cchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 33456677788889999999999988653
No 429
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=24.06 E-value=9.2e+02 Score=28.34 Aligned_cols=134 Identities=16% Similarity=0.009 Sum_probs=83.8
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHH-HhcCCHHHHHHHHHHHHhhccCccchHH
Q 003227 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVL-ARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (837)
Q Consensus 428 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 505 (837)
..|..|+.+|.+.+..+.+.+-..+..... +.+. . .+..|+.. ++.++. .|+.+|..+-. |.-
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~----l~~~l~~y~~~t~s~----~~~~il~~~~~-P~~--- 68 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP---W----LVNGLVDYYLSTNSQ----RALEILVGVQE-PHD--- 68 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---H----HHHHHHHHHhhcCcH----HHHHHHHhcCC-ccH---
Confidence 346688999999888888777777665444 2111 0 14444443 233333 33344444322 111
Q ss_pred HHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 506 l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
..++..|.. .-..+..+..++..|+.+... +..--.|.+...++.|++.|....+..+...|+.+|..|--
T Consensus 69 -------K~~~~~l~~-~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 69 -------KHLFDKLND-YFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred -------HHHHHHHHH-HHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 123333332 124566888999999999884 56667788889999999999877667777788888877764
No 430
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.19 E-value=65 Score=34.86 Aligned_cols=65 Identities=23% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHhccCCHHHHHHHHHHHHHHcCCcccHHHHH-HcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 692 ALARSEAEDVHETAAGALWNLAFNPGNALRIV-EEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 692 ~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~-~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
.+....++++++.|..++.+++.+.++|...+ ....-..+++++..+. +.+-+.++.|++.+.++
T Consensus 335 ~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~-~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 335 SLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPE-PRVNKAAARALAILGEN 400 (763)
T ss_pred HHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccc-cccchhhhHHHHHhhhh
Confidence 34456789999999999999999877776544 3334556777777654 77888888888887753
No 431
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=22.87 E-value=46 Score=28.87 Aligned_cols=8 Identities=25% Similarity=0.559 Sum_probs=3.5
Q ss_pred hhCCCccE
Q 003227 202 KLCPNLTD 209 (837)
Q Consensus 202 ~~~~~L~~ 209 (837)
..|+.|..
T Consensus 58 ~~~~~l~~ 65 (120)
T PF03382_consen 58 AGCSSLNQ 65 (120)
T ss_pred hhhhhcCC
Confidence 33444444
No 432
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.69 E-value=75 Score=32.79 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHc--CCCCHHHHHHHHHHHHhhcCC-hhhHHHHHH
Q 003227 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT--RSPHEGVRQEAAGALWNLSFD-DRNREAIAA 639 (837)
Q Consensus 574 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~ 639 (837)
+..+.+++++.. +++++..+.+-++++.++.-. .+.+|-+++..+.++++|..+ .+++..+..
T Consensus 375 Hvir~ia~lcyk---~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYK---FSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHh---CCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 477889999987 788899999999999888764 556899999999999999887 666766654
No 433
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.66 E-value=6.1e+02 Score=30.36 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=40.7
Q ss_pred HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC---CCcccchhhccchHHHHHHH
Q 003227 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS---NSNNSAVGQEAGALEALVQL 608 (837)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~~~~i~~L~~l 608 (837)
+.+.+...++.++.++....+++++..|...|+.+++.... .......+...+.+..|+..
T Consensus 184 q~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ 247 (838)
T KOG2073|consen 184 QWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKI 247 (838)
T ss_pred HHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHH
Confidence 34445678999999999877789999999999988875210 22233444455555555544
No 434
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=22.43 E-value=1.5e+03 Score=27.66 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=64.3
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhH
Q 003227 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNR 634 (837)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~ 634 (837)
++..+++-+...+...++..|+..+...-.+.+... .-+.++..|-.+.+++-..++..++..|..+-.-++..
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~------~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~ 650 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEAS------KFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRL 650 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchhh------cchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchh
Confidence 344455555533335677888888777665432111 11233666777788888889999999998876543332
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 003227 635 EAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGL 671 (837)
Q Consensus 635 ~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l 671 (837)
.. +....+..|+.++.+ .+..+++.|...+..+
T Consensus 651 ~~-~~~~wl~~li~~~~d---~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 651 FS-LSSKWLHTLISMLND---TESDVTEHARKLIMKV 683 (1529)
T ss_pred hh-hhHHHHHHHHHHHhc---cHHHHHHHHHHHHHHH
Confidence 22 233456667777766 5556666666644443
No 435
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=22.29 E-value=3e+02 Score=29.10 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=57.0
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhcc
Q 003227 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 428 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~ 498 (837)
.++..|.+-|.+.|+.+...|+..|..+.. ....+..|........|..++. +..+.|.+.....+.+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999987 4567777777777888888887 5678888777777766664
No 436
>PF15573 Imm27: Immunity protein 27
Probab=22.15 E-value=2.1e+02 Score=27.45 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcc
Q 003227 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNN 592 (837)
Q Consensus 513 ~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (837)
+.|++++. +..++.+..-+.++...+|.+++.+. .+- +.+|.+.+...+-..|.+|+..++.
T Consensus 49 ~LLiqLMN--~TkDE~vLNLCiRlFcSV~THdDL~~----~nN----l~FLs~asE~~v~TF~s~A~~tlSy-------- 110 (259)
T PF15573_consen 49 NLLIQLMN--QTKDEAVLNLCIRLFCSVATHDDLRD----SNN----LRFLSSASEFGVFTFASGAITTLSY-------- 110 (259)
T ss_pred HHHHHHHh--cchhHHHHHHHHHHHHhhcchHhhhc----ccc----eehHhhhhHHHHHHHHHHhhccchh--------
Confidence 45778886 46677788888888888887766542 222 2344444446666777777777765
Q ss_pred cchhhccchHHHHHHHcCCCCH
Q 003227 593 SAVGQEAGALEALVQLTRSPHE 614 (837)
Q Consensus 593 ~~~~~~~~~i~~L~~lL~~~~~ 614 (837)
.++|.|+.++...+.
T Consensus 111 -------eVIPYLLaLleeWed 125 (259)
T PF15573_consen 111 -------EVIPYLLALLEEWED 125 (259)
T ss_pred -------hHHHHHHHHHHHHhc
Confidence 689999999987643
No 437
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=22.05 E-value=8.3e+02 Score=24.69 Aligned_cols=145 Identities=19% Similarity=0.138 Sum_probs=90.4
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHH-HHHHHHhhcCCCCHHHHHHHHHHHHhcccCc---
Q 003227 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVE-ALVVLAQSCSNASPGLQERAAGALWGLSVSE--- 675 (837)
Q Consensus 600 ~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~-~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~--- 675 (837)
+.++.|...|+..++..+ .+..++ .+.+.++ -|+++|.+ ...++.+...++..|.+++...
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~l-------------g~~~iv~~DLiPiL~~-~~~~~~l~~~~l~LLV~LT~P~~~~ 77 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQL-------------GEWNIVQKDLIPILIS-YKDDDKLFLACLRLLVNLTWPIELL 77 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHH-------------HHhchhhhhHHHHHHh-ccCchHHHHHHHHHHHHhCCCHHHh
Confidence 456666777776655543 333333 2333333 55666655 3457888889999999888521
Q ss_pred ----------------------cchhhhhccCChHHHHHHhcc-----------CCHHHHHHHHHHHHHHcCCcc-----
Q 003227 676 ----------------------ANCIAIGREGGVAPLIALARS-----------EAEDVHETAAGALWNLAFNPG----- 717 (837)
Q Consensus 676 ----------------------~~~~~l~~~~~i~~L~~lL~s-----------~~~~v~~~a~~~L~~l~~~~~----- 717 (837)
.++.++.+.+.+..++..+.. .+..+.+.++..++|+..-|+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~ 157 (266)
T PF04821_consen 78 VESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSAS 157 (266)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 124455555666766666521 235678889999999876221
Q ss_pred --------cH----HHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 718 --------NA----LRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 718 --------~~----~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.+ ..+.+.|....|+.+.++.+.........+.+..+..+..
T Consensus 158 ~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 158 KRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred cccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 11 1345778888888888876445555677888888877754
No 438
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.15 E-value=5.3e+02 Score=22.11 Aligned_cols=68 Identities=21% Similarity=0.069 Sum_probs=43.4
Q ss_pred chHHHHHHHcC-CCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHH-HHHHHHHHHhcccC
Q 003227 600 GALEALVQLTR-SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGL-QERAAGALWGLSVS 674 (837)
Q Consensus 600 ~~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v-~~~A~~~L~~l~~~ 674 (837)
..+|.+...|. +..++.+..+..++..|+....-...+ +..+++.+-. ...... ...+..+|..++..
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~-----l~~l~~~i~~--~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEV-----LNALMESILK--NWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHH-----HHHHHHHHHh--ccccchhHHHHHHHHHHHHHc
Confidence 35678888888 678899999999999998864433332 3344443322 122222 46788888877743
No 439
>PLN03205 ATR interacting protein; Provisional
Probab=20.38 E-value=1.1e+03 Score=25.25 Aligned_cols=209 Identities=17% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc---CCCch-HHHHhcCcHHHHHHHHhc---CCCHHHHHHHHHHHHHHhc
Q 003227 512 VKALVDLIFKWSSGGDGVLERAAGALANLAA---DDKCS-MEVALAGGVHALVMLARS---CKFEGVQEQAARALANLAA 584 (837)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~---~~~~~-~~l~~~g~i~~L~~ll~~---~~~~~~~~~a~~~L~~l~~ 584 (837)
+++|+++. ..++..+...++++|..+.. +++.+ ++-.+.+.+..+--+.+- ...+.++..|+.++.-+..
T Consensus 325 lEaLLdLC---~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 325 VEPLLDLC---KAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHH---hcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCCC-CHHHHHHHHHHHHhh---------------------cCChhhHHHHHHcCC
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRSP-HEGVRQEAAGALWNL---------------------SFDDRNREAIAAAGG 642 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~~L---------------------s~~~~~~~~l~~~g~ 642 (837)
..+ ....++.+....+.+.+.++|+.+ -..|++.|+..|.-| +.++.........|.
T Consensus 402 ssn-a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STD-AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccc-hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHH
Q ss_pred HHHHHHHHhh-----cCCCCHHHHHHHHHHHHhcccC-ccchhhhhccC----------ChHHHHHHhccCCHH------
Q 003227 643 VEALVVLAQS-----CSNASPGLQERAAGALWGLSVS-EANCIAIGREG----------GVAPLIALARSEAED------ 700 (837)
Q Consensus 643 i~~L~~ll~~-----~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~----------~i~~L~~lL~s~~~~------ 700 (837)
-..+..+... ....+.+++..|...|+.++.+ ..+-+.+..+. .++.|+.-+..+...
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILqvLvSemd~e~s~~~~~~e 560 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILHLLVAEIDSESTEFHPKAE 560 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHHHHHHHhhhhhhccCCcHH
Q ss_pred -------HHHHHHHHHHHHcCCcccHHHHHH
Q 003227 701 -------VHETAAGALWNLAFNPGNALRIVE 724 (837)
Q Consensus 701 -------v~~~a~~~L~~l~~~~~~~~~i~~ 724 (837)
+-+.++..|-+|..++.....+++
T Consensus 561 ~~KaRtLLmREaLILLNRLvSn~~ySa~vL~ 591 (652)
T PLN03205 561 IFKARTLLMREILILLNRLVSGLSSSATILK 591 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
No 440
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=20.04 E-value=7.7e+02 Score=27.75 Aligned_cols=173 Identities=17% Similarity=0.033 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHh--c--------CCCHHHHHHHHHHHHHHhcCCCCCCccc
Q 003227 524 SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR--S--------CKFEGVQEQAARALANLAAHGDSNSNNS 593 (837)
Q Consensus 524 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~--~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 593 (837)
+.+.++...|-..|..+..+-+ +...|..|+.+.. . +-++.+|......|..-.....
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~------ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAAT------ 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHh------
Confidence 4555677777777777665511 2235677777666 2 1235666665555554322110
Q ss_pred chhhccchHHHHHHHcCCC--CHHHHHHHHHHH---HhhcCC-hhh-H---HHHHHcCCHHHHHHHH--hhcCCCCHHHH
Q 003227 594 AVGQEAGALEALVQLTRSP--HEGVRQEAAGAL---WNLSFD-DRN-R---EAIAAAGGVEALVVLA--QSCSNASPGLQ 661 (837)
Q Consensus 594 ~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L---~~Ls~~-~~~-~---~~l~~~g~i~~L~~ll--~~~~~~~~~v~ 661 (837)
.-...+..+...+.+. +..++..+...+ .....+ ... - ...+..++.+.+ +.- ......+...|
T Consensus 316 ---~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR 391 (501)
T PF13001_consen 316 ---SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELR 391 (501)
T ss_pred ---CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHH
Confidence 1123344444445555 556666666655 333333 111 1 112223333333 110 01124678899
Q ss_pred HHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 662 ERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 662 ~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
..|-.+|+.++.. +.. ...+.+.+..|.+-|.+++++++...-.||..|..
T Consensus 392 ~~aYe~lG~L~~~~p~l--~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 392 SLAYETLGLLAKRAPSL--FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHHHccCccc--ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 9999999999864 322 01234567778888888889999999999998875
Done!