Query 003227
Match_columns 837
No_of_seqs 527 out of 4858
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l6x_A Catenin delta-1; cateni 100.0 2.2E-36 7.4E-41 332.7 32.5 372 376-759 45-479 (584)
2 1xm9_A Plakophilin 1; armadill 100.0 6.2E-35 2.1E-39 321.8 31.2 368 380-759 3-452 (457)
3 3ul1_B Importin subunit alpha- 100.0 1E-34 3.5E-39 325.5 32.4 362 381-756 59-430 (510)
4 3now_A UNC-45 protein, SD10334 100.0 3.1E-34 1E-38 326.2 33.0 373 371-759 322-740 (810)
5 3nmz_A APC variant protein; pr 100.0 7.8E-35 2.7E-39 314.0 24.4 367 381-762 34-456 (458)
6 3tpo_A Importin subunit alpha- 100.0 7.9E-34 2.7E-38 320.4 33.5 363 380-756 77-449 (529)
7 3now_A UNC-45 protein, SD10334 100.0 1.9E-34 6.5E-39 327.9 25.6 359 381-756 379-782 (810)
8 3ul1_B Importin subunit alpha- 100.0 2.9E-33 9.9E-38 313.7 33.2 374 366-758 88-480 (510)
9 3tpo_A Importin subunit alpha- 100.0 1.1E-32 3.6E-37 311.1 34.9 373 366-757 107-498 (529)
10 3nmz_A APC variant protein; pr 100.0 1.3E-33 4.6E-38 304.4 26.0 335 366-716 57-452 (458)
11 4b8j_A Importin subunit alpha- 100.0 3.6E-32 1.2E-36 308.4 35.7 364 378-757 73-444 (528)
12 3l6x_A Catenin delta-1; cateni 100.0 5.3E-33 1.8E-37 305.8 26.2 326 426-760 46-436 (584)
13 1jdh_A Beta-catenin; beta-cate 100.0 2.6E-32 9E-37 310.4 32.9 436 372-830 51-504 (529)
14 1wa5_B Importin alpha subunit; 100.0 4.9E-31 1.7E-35 298.9 38.0 409 378-808 86-504 (530)
15 1xm9_A Plakophilin 1; armadill 100.0 9E-32 3.1E-36 296.6 30.9 353 429-807 3-442 (457)
16 1jdh_A Beta-catenin; beta-cate 100.0 2.3E-31 7.9E-36 302.7 33.7 375 369-754 91-528 (529)
17 2z6h_A Catenin beta-1, beta-ca 100.0 2.5E-31 8.6E-36 308.0 34.1 374 360-753 37-420 (644)
18 4b8j_A Importin subunit alpha- 100.0 7.3E-31 2.5E-35 297.7 36.1 372 370-759 108-499 (528)
19 2z6h_A Catenin beta-1, beta-ca 100.0 8.4E-31 2.9E-35 303.6 35.8 382 370-759 89-530 (644)
20 1wa5_B Importin alpha subunit; 100.0 5.1E-30 1.8E-34 290.5 37.1 373 370-760 121-514 (530)
21 2z6g_A B-catenin; FULL-length, 100.0 2.5E-30 8.7E-35 303.6 33.2 383 371-761 226-668 (780)
22 2z6g_A B-catenin; FULL-length, 100.0 1.7E-30 5.7E-35 305.2 30.9 342 379-738 192-542 (780)
23 2jdq_A Importin alpha-1 subuni 100.0 1.4E-29 4.9E-34 281.6 34.4 360 381-757 22-391 (450)
24 2jdq_A Importin alpha-1 subuni 100.0 2E-29 6.8E-34 280.5 33.8 370 371-759 55-446 (450)
25 3nmw_A APC variant protein; AR 100.0 1.6E-29 5.6E-34 264.9 21.1 269 441-718 45-338 (354)
26 3nmw_A APC variant protein; AR 100.0 5.8E-29 2E-33 260.8 20.6 277 482-762 45-340 (354)
27 2ast_B S-phase kinase-associat 99.9 6.3E-27 2.1E-31 249.0 21.7 251 37-295 6-264 (336)
28 3opb_A SWI5-dependent HO expre 99.9 3.7E-25 1.3E-29 245.9 25.2 370 367-757 284-729 (778)
29 4hxt_A De novo protein OR329; 99.9 1.1E-23 3.8E-28 214.0 23.1 238 428-675 2-243 (252)
30 4hxt_A De novo protein OR329; 99.9 1.5E-23 5.1E-28 213.0 21.6 239 379-631 2-243 (252)
31 4db8_A Armadillo-repeat protei 99.9 2E-23 6.8E-28 212.0 19.8 236 428-673 12-251 (252)
32 4db8_A Armadillo-repeat protei 99.9 1.7E-23 5.9E-28 212.5 18.1 236 381-630 14-252 (252)
33 3opb_A SWI5-dependent HO expre 99.9 3E-21 1E-25 214.8 31.0 387 421-826 248-695 (778)
34 2p1m_B Transport inhibitor res 99.9 1.2E-22 4.2E-27 234.0 19.0 174 37-215 3-221 (594)
35 3tt9_A Plakophilin-2; cell adh 99.9 5E-22 1.7E-26 192.7 13.7 198 380-585 9-230 (233)
36 3tt9_A Plakophilin-2; cell adh 99.9 1.4E-21 4.8E-26 189.6 13.4 196 429-630 9-230 (233)
37 4db6_A Armadillo repeat protei 99.8 3.7E-20 1.3E-24 182.0 20.1 200 424-630 8-210 (210)
38 3ogk_B Coronatine-insensitive 99.8 1.5E-20 5.2E-25 216.4 19.4 261 41-306 14-380 (592)
39 4db6_A Armadillo repeat protei 99.8 5.5E-20 1.9E-24 180.7 19.7 197 377-584 10-209 (210)
40 1xqr_A HSPBP1 protein; armadil 99.8 1.7E-18 5.8E-23 176.3 22.4 226 441-673 53-287 (296)
41 1xqr_A HSPBP1 protein; armadil 99.8 1.8E-18 6.1E-23 176.1 18.4 224 527-757 54-288 (296)
42 2p1m_B Transport inhibitor res 99.7 1E-16 3.4E-21 184.6 22.6 220 80-306 291-533 (594)
43 2ast_B S-phase kinase-associat 99.7 7.3E-17 2.5E-21 171.1 18.8 199 102-308 92-300 (336)
44 3ogk_B Coronatine-insensitive 99.7 7.9E-17 2.7E-21 185.3 20.1 221 81-306 296-540 (592)
45 1oyz_A Hypothetical protein YI 99.6 7.8E-14 2.7E-18 143.3 24.1 260 423-752 18-278 (280)
46 3grl_A General vesicular trans 99.6 7.1E-13 2.4E-17 143.7 31.6 361 380-759 22-452 (651)
47 3grl_A General vesicular trans 99.6 3E-13 1E-17 146.7 28.5 388 374-763 55-510 (651)
48 2ca6_A RAN GTPase-activating p 99.6 1.8E-13 6.3E-18 147.7 23.7 208 80-295 34-290 (386)
49 2ca6_A RAN GTPase-activating p 99.6 1.1E-13 3.6E-18 149.6 20.5 192 100-298 29-263 (386)
50 1oyz_A Hypothetical protein YI 99.5 1.5E-12 5E-17 133.8 26.0 232 464-756 18-250 (280)
51 1b3u_A Protein (protein phosph 99.5 5.9E-13 2E-17 152.9 24.6 342 379-756 164-509 (588)
52 1z7x_W Ribonuclease inhibitor; 99.5 5.8E-13 2E-17 147.8 22.6 212 80-299 58-304 (461)
53 1z7x_W Ribonuclease inhibitor; 99.5 1.5E-13 5.1E-18 152.6 17.5 67 227-295 199-272 (461)
54 1b3u_A Protein (protein phosph 99.5 1.2E-12 4.1E-17 150.3 23.8 344 379-756 242-587 (588)
55 4fdd_A Transportin-1; heat rep 99.5 4.9E-13 1.7E-17 160.3 18.8 353 381-755 130-511 (852)
56 4fdd_A Transportin-1; heat rep 99.4 1.2E-12 4.1E-17 156.9 19.6 346 382-759 93-474 (852)
57 3un9_A NLR family member X1; l 99.4 5.1E-12 1.7E-16 134.2 20.1 166 103-275 72-261 (372)
58 3un9_A NLR family member X1; l 99.4 1.4E-12 4.9E-17 138.5 15.8 174 119-300 66-260 (372)
59 2vgl_B AP-2 complex subunit be 99.4 3.1E-11 1.1E-15 137.4 27.6 332 381-760 123-461 (591)
60 3goz_A Leucine-rich repeat-con 99.4 2.2E-12 7.5E-17 137.7 14.9 14 254-267 197-210 (362)
61 3ltm_A Alpha-REP4; protein eng 99.4 1.5E-11 5.3E-16 120.1 18.8 188 379-632 19-206 (211)
62 3ltm_A Alpha-REP4; protein eng 99.4 3.2E-11 1.1E-15 117.8 20.4 189 426-675 17-205 (211)
63 3ltj_A Alpharep-4; protein eng 99.4 3E-11 1E-15 117.0 19.2 185 378-628 13-197 (201)
64 3goz_A Leucine-rich repeat-con 99.4 4.9E-12 1.7E-16 135.0 14.4 207 76-289 20-264 (362)
65 3e4g_A ATP synthase subunit S, 99.3 9.9E-13 3.4E-17 120.5 6.8 92 126-222 62-156 (176)
66 3ltj_A Alpharep-4; protein eng 99.3 7.4E-11 2.5E-15 114.2 20.1 185 427-672 13-197 (201)
67 3e4g_A ATP synthase subunit S, 99.3 1.2E-12 4.2E-17 119.9 6.2 102 151-256 61-170 (176)
68 2vgl_B AP-2 complex subunit be 99.3 3.3E-11 1.1E-15 137.1 18.7 333 381-760 88-423 (591)
69 1w63_A Adapter-related protein 99.2 1.4E-09 4.6E-14 124.3 25.5 325 379-755 142-489 (618)
70 1ibr_B P95, importin beta-1 su 99.2 1.6E-09 5.5E-14 120.0 23.1 312 432-757 94-438 (462)
71 1w63_A Adapter-related protein 99.2 6.4E-09 2.2E-13 118.6 27.5 323 381-758 72-416 (618)
72 2bpt_A Importin beta-1 subunit 99.1 4.9E-09 1.7E-13 126.1 22.8 353 381-757 371-764 (861)
73 4ezg_A Putative uncharacterize 99.1 5.2E-11 1.8E-15 114.7 4.0 152 102-267 43-195 (197)
74 4fmz_A Internalin; leucine ric 99.1 2.5E-10 8.5E-15 121.2 9.6 191 80-295 112-303 (347)
75 4fmz_A Internalin; leucine ric 99.0 2.4E-10 8.2E-15 121.3 8.6 177 99-295 151-327 (347)
76 2bpt_A Importin beta-1 subunit 99.0 1.6E-08 5.5E-13 121.5 25.6 357 381-760 136-533 (861)
77 1qgr_A Protein (importin beta 99.0 1.4E-08 4.9E-13 122.3 23.4 352 381-757 130-538 (876)
78 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2.8E-10 9.7E-15 82.1 4.7 48 37-84 6-53 (53)
79 1h6t_A Internalin B; cell adhe 99.0 2.4E-10 8.1E-15 117.5 5.9 172 102-295 45-216 (291)
80 1ibr_B P95, importin beta-1 su 99.0 2.8E-09 9.6E-14 118.0 15.0 308 382-714 93-437 (462)
81 2ra8_A Uncharacterized protein 99.0 6.8E-10 2.3E-14 116.6 9.1 148 143-300 164-328 (362)
82 1h6u_A Internalin H; cell adhe 99.0 3.3E-10 1.1E-14 117.6 6.6 174 100-295 60-233 (308)
83 1h6u_A Internalin H; cell adhe 99.0 3.5E-10 1.2E-14 117.4 6.6 172 102-295 40-211 (308)
84 1qgr_A Protein (importin beta 99.0 6E-09 2.1E-13 125.6 18.4 350 382-757 93-480 (876)
85 1io0_A Tropomodulin; LRR prote 99.0 8.1E-09 2.8E-13 97.7 14.2 131 141-295 26-167 (185)
86 1m9s_A Internalin B; cell inva 98.9 5.5E-10 1.9E-14 126.2 5.3 172 102-295 42-213 (605)
87 4ezg_A Putative uncharacterize 98.9 2.3E-10 7.9E-15 110.1 1.9 151 122-292 41-194 (197)
88 1wwl_A Monocyte differentiatio 98.9 4.4E-10 1.5E-14 117.0 4.1 176 101-293 119-310 (312)
89 4ady_A RPN2, 26S proteasome re 98.9 1.2E-06 4.3E-11 100.2 31.7 303 386-760 365-680 (963)
90 4glp_A Monocyte differentiatio 98.9 2.7E-10 9.1E-15 118.6 1.3 179 101-294 115-309 (310)
91 4fcg_A Uncharacterized protein 98.9 5.1E-11 1.8E-15 124.8 -4.3 108 178-292 182-291 (328)
92 1io0_A Tropomodulin; LRR prote 98.9 2.3E-08 7.8E-13 94.6 14.5 123 123-269 34-167 (185)
93 4ady_A RPN2, 26S proteasome re 98.9 2.6E-07 8.8E-12 105.7 25.1 312 379-758 392-721 (963)
94 1ozn_A Reticulon 4 receptor; N 98.9 1.8E-10 6E-15 118.5 -0.8 190 100-300 53-247 (285)
95 2vgl_A Adaptor protein complex 98.9 1.5E-07 5.1E-12 107.0 23.1 291 381-714 113-433 (621)
96 1u6g_C TIP120 protein, CAND1; 98.9 5.1E-08 1.7E-12 121.6 20.6 354 379-759 48-466 (1230)
97 2ra8_A Uncharacterized protein 98.8 5.8E-09 2E-13 109.5 9.9 179 99-289 135-341 (362)
98 1o6v_A Internalin A; bacterial 98.8 3.2E-09 1.1E-13 117.4 8.0 36 101-136 175-210 (466)
99 2vgl_A Adaptor protein complex 98.8 5.9E-07 2E-11 102.0 26.6 327 381-756 76-433 (621)
100 3o53_A Protein LRIM1, AGAP0063 98.8 2.6E-10 8.9E-15 119.1 -0.9 197 79-292 35-250 (317)
101 1o6v_A Internalin A; bacterial 98.8 3E-09 1E-13 117.6 6.8 175 99-295 195-369 (466)
102 2z66_A Variable lymphocyte rec 98.8 9.5E-11 3.2E-15 121.9 -7.0 188 102-299 77-269 (306)
103 2z66_A Variable lymphocyte rec 98.8 6.2E-11 2.1E-15 123.3 -8.6 180 101-293 50-237 (306)
104 3rfs_A Internalin B, repeat mo 98.8 6.2E-10 2.1E-14 113.3 -0.9 176 102-291 40-218 (272)
105 3v47_A TOLL-like receptor 5B a 98.7 3.3E-09 1.1E-13 117.2 3.7 85 205-294 275-362 (455)
106 1u6g_C TIP120 protein, CAND1; 98.7 3.7E-07 1.3E-11 113.9 22.4 263 430-714 8-284 (1230)
107 3o53_A Protein LRIM1, AGAP0063 98.7 3.7E-10 1.3E-14 117.8 -3.9 157 123-292 118-276 (317)
108 4gmo_A Putative uncharacterize 98.7 1.7E-07 5.8E-12 108.0 17.7 198 377-584 32-258 (684)
109 4fcg_A Uncharacterized protein 98.7 3E-10 1E-14 119.0 -4.9 180 102-295 80-270 (328)
110 1ozn_A Reticulon 4 receptor; N 98.7 4.1E-10 1.4E-14 115.7 -3.8 181 103-295 32-217 (285)
111 1xeu_A Internalin C; cellular 98.7 1.2E-09 4E-14 110.4 -0.9 145 123-289 39-183 (263)
112 4gmo_A Putative uncharacterize 98.7 3.1E-08 1.1E-12 114.1 10.9 196 470-672 35-257 (684)
113 3oja_A Leucine-rich immune mol 98.7 7.9E-10 2.7E-14 122.5 -2.3 135 150-295 119-253 (487)
114 1wwl_A Monocyte differentiatio 98.7 1E-09 3.5E-14 114.2 -1.4 180 101-294 93-289 (312)
115 2z80_A TOLL-like receptor 2, v 98.7 2.8E-09 9.6E-14 113.2 1.6 157 101-266 74-235 (353)
116 3bz5_A Internalin-J, INLJ; leu 98.7 4.6E-09 1.6E-13 115.2 2.9 183 81-294 45-227 (457)
117 1h6t_A Internalin B; cell adhe 98.7 5.1E-09 1.7E-13 107.5 2.9 151 123-295 44-194 (291)
118 3rfs_A Internalin B, repeat mo 98.7 2.8E-09 9.7E-14 108.4 0.6 171 100-289 60-233 (272)
119 2z7x_B TOLL-like receptor 1, v 98.6 7E-09 2.4E-13 116.7 3.0 182 103-295 302-485 (520)
120 2ell_A Acidic leucine-rich nuc 98.6 4E-09 1.4E-13 98.5 0.6 103 125-237 24-130 (168)
121 2z80_A TOLL-like receptor 2, v 98.6 2.1E-09 7.3E-14 114.1 -1.7 181 103-294 52-237 (353)
122 3rgz_A Protein brassinosteroid 98.6 5.2E-10 1.8E-14 131.8 -7.2 175 102-289 99-280 (768)
123 3zyj_A Leucine-rich repeat-con 98.6 8E-10 2.7E-14 121.3 -5.5 13 277-289 278-290 (440)
124 3zyi_A Leucine-rich repeat-con 98.6 1.1E-09 3.8E-14 120.6 -4.5 12 124-135 98-109 (452)
125 4glp_A Monocyte differentiatio 98.6 2.9E-08 9.9E-13 103.1 6.1 181 103-293 64-265 (310)
126 3bz5_A Internalin-J, INLJ; leu 98.6 1.2E-08 4.3E-13 111.7 3.4 182 81-294 67-248 (457)
127 3t6q_A CD180 antigen; protein- 98.6 2.6E-09 9E-14 122.7 -2.2 178 100-289 347-534 (606)
128 3zyi_A Leucine-rich repeat-con 98.6 2.7E-09 9.2E-14 117.5 -2.4 115 177-299 194-311 (452)
129 1m9s_A Internalin B; cell inva 98.6 2.4E-08 8.1E-13 112.9 5.2 166 81-267 46-211 (605)
130 3v47_A TOLL-like receptor 5B a 98.6 1.1E-08 3.6E-13 113.1 2.3 24 252-275 211-234 (455)
131 2o6q_A Variable lymphocyte rec 98.6 2.3E-09 8E-14 108.9 -2.8 196 79-290 17-217 (270)
132 2z81_A CD282 antigen, TOLL-lik 98.6 5.5E-08 1.9E-12 110.2 8.2 77 206-289 432-508 (549)
133 2z81_A CD282 antigen, TOLL-lik 98.6 1.4E-07 4.6E-12 106.9 11.2 171 102-289 309-484 (549)
134 1xeu_A Internalin C; cellular 98.6 1.4E-08 5E-13 102.3 2.7 147 101-266 39-185 (263)
135 1xku_A Decorin; proteoglycan, 98.6 9.4E-09 3.2E-13 108.0 1.3 177 102-295 99-279 (330)
136 3t6q_A CD180 antigen; protein- 98.6 7.9E-10 2.7E-14 127.1 -7.7 206 80-295 303-516 (606)
137 2z63_A TOLL-like receptor 4, v 98.6 5.4E-10 1.9E-14 127.5 -9.7 84 204-289 420-505 (570)
138 3oja_B Anopheles plasmodium-re 98.5 5.8E-09 2E-13 119.1 -1.5 81 203-289 252-335 (597)
139 1xku_A Decorin; proteoglycan, 98.5 1E-08 3.4E-13 107.8 0.3 108 177-289 143-251 (330)
140 3vq2_A TLR4, TOLL-like recepto 98.5 1.8E-09 6.2E-14 124.0 -6.0 180 101-293 348-535 (606)
141 3o6n_A APL1; leucine-rich repe 98.5 5.7E-09 1.9E-13 112.5 -1.8 58 100-159 114-173 (390)
142 3oja_A Leucine-rich immune mol 98.5 4.6E-09 1.6E-13 116.3 -2.7 152 123-287 118-271 (487)
143 2je0_A Acidic leucine-rich nuc 98.5 3.5E-08 1.2E-12 89.9 3.6 81 177-261 62-148 (149)
144 3zyj_A Leucine-rich repeat-con 98.5 3.8E-09 1.3E-13 115.8 -3.5 34 204-237 159-195 (440)
145 3rgz_A Protein brassinosteroid 98.5 3.9E-09 1.3E-13 124.3 -3.7 58 177-237 198-257 (768)
146 2id5_A Lingo-1, leucine rich r 98.5 9.3E-09 3.2E-13 114.2 -0.5 129 101-238 78-211 (477)
147 1p9a_G Platelet glycoprotein I 98.5 1E-08 3.6E-13 105.0 -0.5 181 103-299 31-216 (290)
148 2ell_A Acidic leucine-rich nuc 98.5 1.3E-08 4.3E-13 95.1 0.1 133 149-289 22-158 (168)
149 3vq2_A TLR4, TOLL-like recepto 98.5 1.2E-09 4.1E-14 125.5 -9.2 114 177-294 397-512 (606)
150 2id5_A Lingo-1, leucine rich r 98.5 5.8E-09 2E-13 115.9 -3.7 182 101-295 54-240 (477)
151 3o6n_A APL1; leucine-rich repe 98.5 1.1E-08 3.8E-13 110.2 -1.4 13 102-114 68-80 (390)
152 1ogq_A PGIP-2, polygalacturona 98.5 1.6E-09 5.4E-14 112.8 -8.0 195 80-289 52-255 (313)
153 2je0_A Acidic leucine-rich nuc 98.5 4.8E-08 1.6E-12 89.0 2.9 129 150-286 16-148 (149)
154 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 2.1E-08 7.1E-13 113.8 0.4 195 93-299 322-518 (562)
155 3oja_B Anopheles plasmodium-re 98.5 1.4E-08 4.8E-13 116.0 -1.2 35 102-136 98-134 (597)
156 2z63_A TOLL-like receptor 4, v 98.4 3.3E-09 1.1E-13 121.0 -6.8 178 102-291 346-531 (570)
157 2z62_A TOLL-like receptor 4, v 98.4 2.9E-09 9.7E-14 108.8 -7.0 176 102-289 51-235 (276)
158 4ecn_A Leucine-rich repeat pro 98.4 4.1E-08 1.4E-12 115.0 1.8 157 99-266 444-632 (876)
159 1ho8_A Vacuolar ATP synthase s 98.4 4.2E-05 1.4E-09 80.4 24.0 326 380-713 78-475 (480)
160 3b2a_A TON_1937, putative unch 98.4 1.4E-05 4.7E-10 74.2 17.7 221 510-750 33-255 (265)
161 4ecn_A Leucine-rich repeat pro 98.4 4.3E-08 1.5E-12 114.9 1.5 127 101-237 489-629 (876)
162 1p9a_G Platelet glycoprotein I 98.4 1.8E-08 6E-13 103.3 -2.2 175 102-293 9-186 (290)
163 2z7x_B TOLL-like receptor 1, v 98.4 1.9E-07 6.5E-12 104.9 6.0 156 100-266 321-481 (520)
164 1ziw_A TOLL-like receptor 3; i 98.4 8.6E-09 2.9E-13 120.2 -5.3 203 80-295 383-600 (680)
165 1ogq_A PGIP-2, polygalacturona 98.4 2.6E-09 8.9E-14 111.1 -8.9 33 204-237 148-184 (313)
166 3m19_A Variable lymphocyte rec 98.4 1.5E-08 5.2E-13 101.6 -3.5 107 177-289 81-190 (251)
167 2z62_A TOLL-like receptor 4, v 98.3 2.4E-08 8.2E-13 101.8 -2.6 180 103-295 28-216 (276)
168 1ho8_A Vacuolar ATP synthase s 98.3 2.3E-05 7.9E-10 82.3 19.5 234 433-672 172-475 (480)
169 3m19_A Variable lymphocyte rec 98.3 6.4E-08 2.2E-12 97.0 0.2 185 66-266 3-192 (251)
170 1pgv_A TMD-1, tropomodulin TMD 98.3 2.8E-06 9.4E-11 79.3 11.1 72 141-215 31-108 (197)
171 1te4_A Conserved protein MTH18 98.3 7.9E-08 2.7E-12 85.2 0.6 121 599-754 11-131 (131)
172 2ft3_A Biglycan; proteoglycan, 98.3 2E-08 6.9E-13 105.5 -4.5 85 205-295 193-280 (332)
173 3g06_A SSPH2 (leucine-rich rep 98.3 3E-07 1E-11 104.0 4.6 78 205-293 221-298 (622)
174 3b2a_A TON_1937, putative unch 98.3 5.7E-05 2E-09 70.2 18.7 185 428-631 33-220 (265)
175 4eco_A Uncharacterized protein 98.3 2.2E-08 7.6E-13 115.0 -4.8 128 101-237 247-387 (636)
176 1pgv_A TMD-1, tropomodulin TMD 98.3 8.9E-06 3E-10 75.9 13.3 119 169-289 31-168 (197)
177 2xwt_C Thyrotropin receptor; s 98.3 5.6E-09 1.9E-13 104.0 -9.4 177 103-292 31-218 (239)
178 4eco_A Uncharacterized protein 98.3 4.5E-08 1.5E-12 112.4 -3.2 178 99-289 202-413 (636)
179 1a9n_A U2A', U2A'; complex (nu 98.3 1.9E-07 6.6E-12 87.7 1.7 39 251-289 111-151 (176)
180 2o6q_A Variable lymphocyte rec 98.3 1.1E-07 3.8E-12 96.4 -0.2 154 101-265 59-217 (270)
181 1ds9_A Outer arm dynein; leuci 98.2 4.2E-08 1.4E-12 94.3 -3.3 103 178-284 69-180 (198)
182 2ft3_A Biglycan; proteoglycan, 98.2 1.9E-08 6.4E-13 105.8 -7.2 102 103-215 54-157 (332)
183 2xwt_C Thyrotropin receptor; s 98.2 2.9E-08 9.8E-13 98.8 -5.6 175 101-290 53-238 (239)
184 1ziw_A TOLL-like receptor 3; i 98.2 1.7E-07 5.9E-12 109.1 -0.0 39 251-289 193-233 (680)
185 3tjz_B Coatomer subunit gamma; 98.2 5.2E-05 1.8E-09 78.0 18.2 278 382-711 71-350 (355)
186 1te4_A Conserved protein MTH18 98.2 2.3E-07 7.9E-12 82.1 0.1 119 379-539 12-130 (131)
187 1a9n_A U2A', U2A'; complex (nu 98.2 3.8E-07 1.3E-11 85.6 1.6 134 123-268 17-155 (176)
188 3cvr_A Invasion plasmid antige 98.2 5.5E-07 1.9E-11 100.5 3.1 162 103-293 80-244 (571)
189 3j0a_A TOLL-like receptor 5; m 98.1 6.5E-08 2.2E-12 115.2 -5.9 178 103-289 24-215 (844)
190 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 5.7E-07 1.9E-11 102.0 1.8 154 101-266 351-510 (562)
191 1dce_A Protein (RAB geranylger 98.1 6.3E-08 2.2E-12 108.7 -6.1 101 180-289 442-544 (567)
192 3j0a_A TOLL-like receptor 5; m 98.1 1.9E-07 6.5E-12 111.2 -2.5 13 277-289 361-373 (844)
193 2qk2_A LP04448P; mini spindles 98.1 2.4E-05 8.3E-10 77.5 13.2 183 557-757 18-206 (242)
194 2o6s_A Variable lymphocyte rec 98.1 4.2E-07 1.4E-11 88.0 0.0 59 204-265 99-160 (208)
195 3tjz_B Coatomer subunit gamma; 98.1 4.3E-05 1.5E-09 78.7 14.5 273 431-750 71-347 (355)
196 2db0_A 253AA long hypothetical 98.0 0.0016 5.6E-08 57.8 21.6 214 508-756 30-246 (253)
197 3g06_A SSPH2 (leucine-rich rep 98.0 1.9E-06 6.5E-11 97.4 4.2 34 253-292 221-254 (622)
198 2o6s_A Variable lymphocyte rec 98.0 2.9E-07 1E-11 89.2 -2.8 146 103-266 28-178 (208)
199 2qk2_A LP04448P; mini spindles 98.0 4.2E-05 1.4E-09 75.8 12.9 180 515-714 20-205 (242)
200 2xot_A Amphoterin-induced prot 98.0 4.4E-07 1.5E-11 96.3 -2.2 162 125-296 39-207 (361)
201 3cvr_A Invasion plasmid antige 98.0 1.1E-06 3.7E-11 98.1 0.8 165 101-295 57-223 (571)
202 1jl5_A Outer protein YOPM; leu 98.0 4.6E-06 1.6E-10 91.2 5.3 95 103-215 111-205 (454)
203 3l2o_B F-box only protein 4; s 97.9 1.5E-06 5E-11 84.8 0.8 48 40-87 5-52 (312)
204 1jl5_A Outer protein YOPM; leu 97.9 4.8E-06 1.6E-10 91.0 5.0 158 103-289 91-248 (454)
205 1ds9_A Outer arm dynein; leuci 97.9 3.7E-07 1.3E-11 87.6 -4.1 123 123-259 46-180 (198)
206 2v70_A SLIT-2, SLIT homolog 2 97.9 4.7E-07 1.6E-11 88.4 -3.4 83 204-289 80-164 (220)
207 2db0_A 253AA long hypothetical 97.9 0.0012 4.2E-08 58.5 18.4 211 470-714 33-246 (253)
208 2v70_A SLIT-2, SLIT homolog 2 97.9 8.4E-07 2.9E-11 86.6 -2.7 150 106-265 14-165 (220)
209 3e6j_A Variable lymphocyte rec 97.9 2.4E-06 8.3E-11 83.9 0.6 33 204-237 111-145 (229)
210 3e6j_A Variable lymphocyte rec 97.8 2.9E-06 9.8E-11 83.4 0.8 149 78-240 19-172 (229)
211 2v9t_B SLIT homolog 2 protein 97.8 9.4E-07 3.2E-11 86.2 -2.7 83 204-290 79-164 (220)
212 4g8a_A TOLL-like receptor 4; l 97.8 3.7E-07 1.3E-11 105.4 -7.5 120 176-300 466-589 (635)
213 2iw3_A Elongation factor 3A; a 97.8 0.00073 2.5E-08 78.7 19.5 297 432-755 18-323 (986)
214 2qk1_A Protein STU2; STU2P, XM 97.7 0.00026 8.9E-09 69.9 13.0 186 523-714 26-220 (249)
215 2xot_A Amphoterin-induced prot 97.7 2.5E-06 8.7E-11 90.4 -2.1 152 103-265 39-201 (361)
216 3dad_A FH1/FH2 domain-containi 97.7 0.00074 2.5E-08 67.3 15.6 151 432-585 122-287 (339)
217 2qk1_A Protein STU2; STU2P, XM 97.7 0.00021 7.1E-09 70.6 11.9 188 559-756 21-220 (249)
218 2v9t_B SLIT homolog 2 protein 97.7 2.6E-06 9E-11 83.0 -1.9 84 177-265 78-164 (220)
219 4g8a_A TOLL-like receptor 4; l 97.7 3.2E-06 1.1E-10 97.6 -1.6 155 125-289 52-212 (635)
220 4b8c_D Glucose-repressible alc 97.7 7E-06 2.4E-10 95.2 1.1 108 147-266 220-329 (727)
221 1dce_A Protein (RAB geranylger 97.7 7.8E-06 2.7E-10 91.7 0.6 103 178-284 462-566 (567)
222 3sb4_A Hypothetical leucine ri 97.6 1.5E-05 5E-10 83.3 2.5 96 192-295 213-313 (329)
223 2iw3_A Elongation factor 3A; a 97.6 0.0028 9.7E-08 73.8 20.9 294 384-713 19-323 (986)
224 2e31_A FBS1, F-box only protei 97.6 2.3E-05 7.9E-10 77.8 2.5 46 38-83 49-95 (297)
225 4b8c_D Glucose-repressible alc 97.5 1.9E-05 6.6E-10 91.5 1.4 110 175-295 220-332 (727)
226 2wfh_A SLIT homolog 2 protein 97.5 1.8E-05 6.3E-10 75.1 0.9 89 203-295 52-143 (193)
227 1w8a_A SLIT protein; signaling 97.4 1.4E-05 4.6E-10 76.0 -1.6 82 204-289 53-137 (192)
228 3dad_A FH1/FH2 domain-containi 97.3 0.0093 3.2E-07 59.5 17.8 154 382-542 121-286 (339)
229 1wa5_C Importin alpha RE-expor 97.3 0.031 1E-06 67.3 25.5 351 382-757 88-526 (960)
230 1w8a_A SLIT protein; signaling 97.3 1.4E-05 4.8E-10 75.9 -3.3 59 204-265 77-138 (192)
231 2o6r_A Variable lymphocyte rec 97.2 5.4E-05 1.9E-09 70.8 0.5 13 277-289 123-135 (177)
232 2wfh_A SLIT homolog 2 protein 97.1 7.7E-05 2.6E-09 70.8 0.1 84 177-265 52-138 (193)
233 2o6r_A Variable lymphocyte rec 97.1 0.00014 4.9E-09 67.8 1.7 85 177-266 50-137 (177)
234 3v7d_B Cell division control p 97.1 0.00011 3.6E-09 80.9 0.9 52 36-87 11-63 (464)
235 2ovr_B FBW7, F-BOX/WD repeat p 97.0 0.00031 1.1E-08 76.7 3.9 49 36-84 15-63 (445)
236 3rw6_A Nuclear RNA export fact 96.9 0.0011 3.8E-08 65.5 6.5 82 201-285 166-258 (267)
237 1p22_A F-BOX/WD-repeat protein 96.9 0.00016 5.4E-09 78.8 0.3 49 36-84 7-59 (435)
238 3sb4_A Hypothetical leucine ri 96.8 0.00031 1E-08 73.2 1.8 120 150-284 201-327 (329)
239 3rw6_A Nuclear RNA export fact 96.8 0.0019 6.7E-08 63.7 7.1 87 173-260 164-258 (267)
240 4ay9_X Follicle-stimulating ho 96.8 8.6E-06 2.9E-10 85.9 -10.7 59 206-266 155-215 (350)
241 4fdw_A Leucine rich hypothetic 96.7 0.00021 7.3E-09 76.2 -0.6 165 101-289 178-356 (401)
242 1lrv_A LRV, leucine-rich repea 96.4 0.00073 2.5E-08 65.7 1.1 67 605-709 175-241 (244)
243 2r9u_A Variable lymphocyte rec 96.2 0.0013 4.5E-08 60.9 1.5 81 205-289 33-116 (174)
244 1lrv_A LRV, leucine-rich repea 96.1 0.0016 5.3E-08 63.4 1.7 180 458-752 63-242 (244)
245 3g39_A Variable lymphocyte rec 96.1 0.0018 6.1E-08 59.7 2.0 14 224-237 75-88 (170)
246 2r9u_A Variable lymphocyte rec 96.1 0.002 6.8E-08 59.7 2.0 83 179-266 33-118 (174)
247 3g39_A Variable lymphocyte rec 96.0 0.0015 5.1E-08 60.3 1.1 102 180-290 10-114 (170)
248 1wa5_C Importin alpha RE-expor 96.0 0.6 2.1E-05 56.0 24.0 302 443-757 261-629 (960)
249 2fv2_A RCD1 required for cell 96.0 1.1 3.8E-05 42.6 20.0 218 441-671 14-266 (268)
250 2fv2_A RCD1 required for cell 95.7 0.14 4.9E-06 48.6 12.7 176 530-713 73-267 (268)
251 4ay9_X Follicle-stimulating ho 95.5 0.00012 4E-09 77.1 -10.2 178 103-294 30-217 (350)
252 2x1g_F Cadmus; transport prote 95.1 2.1 7.3E-05 51.3 24.4 295 440-761 476-819 (971)
253 1upk_A MO25 protein; transfera 94.9 3.5 0.00012 41.1 20.9 215 374-597 73-296 (341)
254 2x19_B Importin-13; nuclear tr 94.9 4.1 0.00014 48.7 26.0 337 389-757 459-847 (963)
255 3m1i_C Exportin-1; heat repeat 94.8 7.1 0.00024 47.1 27.7 363 381-759 140-572 (1049)
256 2x19_B Importin-13; nuclear tr 94.4 8.5 0.00029 45.9 27.3 300 391-715 501-847 (963)
257 4fdw_A Leucine rich hypothetic 94.3 0.018 6E-07 61.3 2.9 146 102-265 202-357 (401)
258 2ifg_A High affinity nerve gro 94.1 0.018 6E-07 60.2 2.3 84 177-265 29-115 (347)
259 3ebb_A Phospholipase A2-activa 94.1 3.8 0.00013 40.9 19.1 151 430-585 105-264 (304)
260 3m1i_C Exportin-1; heat repeat 94.0 5 0.00017 48.5 24.1 347 382-759 197-621 (1049)
261 1lsh_A Lipovitellin (LV-1N, LV 93.9 5.3 0.00018 48.0 23.4 171 512-715 393-577 (1056)
262 2x1g_F Cadmus; transport prote 93.8 3.8 0.00013 49.1 22.3 216 525-756 476-722 (971)
263 2of3_A ZYG-9; multifunctional 93.7 0.86 2.9E-05 44.4 13.2 134 568-714 100-236 (266)
264 4ffb_C Protein STU2; tubulin f 93.6 1.6 5.6E-05 43.3 15.7 188 559-757 14-213 (278)
265 4hat_C Exportin-1; heat repeat 93.5 16 0.00054 43.6 27.4 145 612-759 465-621 (1023)
266 1upk_A MO25 protein; transfera 93.5 2.5 8.6E-05 42.2 16.1 205 548-759 72-286 (341)
267 3c2g_A SYS-1 protein; beta-cat 93.4 1 3.4E-05 44.5 12.8 135 445-582 260-401 (619)
268 2ifg_A High affinity nerve gro 93.3 0.027 9.4E-07 58.7 2.1 89 147-242 27-118 (347)
269 4ffb_C Protein STU2; tubulin f 93.3 1.1 3.9E-05 44.4 14.1 188 433-630 14-213 (278)
270 3oc3_A Helicase MOT1, MOT1; re 93.2 1.4 4.9E-05 46.9 14.3 234 523-809 184-431 (800)
271 2of3_A ZYG-9; multifunctional 92.7 0.46 1.6E-05 46.3 9.5 145 333-498 88-236 (266)
272 3ibv_A Exportin-T; karyopherin 92.6 21 0.00071 42.4 29.3 99 656-759 455-569 (980)
273 3oc3_A Helicase MOT1, MOT1; re 92.6 0.82 2.8E-05 48.7 11.6 190 527-752 242-432 (800)
274 4gt6_A Cell surface protein; l 92.5 0.11 3.8E-06 55.1 5.4 122 148-286 262-386 (394)
275 3ebb_A Phospholipase A2-activa 92.3 2.6 8.9E-05 42.1 14.7 139 525-668 160-301 (304)
276 4gt6_A Cell surface protein; l 91.6 0.17 5.7E-06 53.7 5.4 101 176-288 262-367 (394)
277 4fs7_A Uncharacterized protein 91.5 0.038 1.3E-06 58.8 0.3 77 203-286 295-374 (394)
278 3l9t_A Putative uncharacterize 90.6 2.7 9.4E-05 39.6 11.9 129 656-809 83-220 (240)
279 1lsh_A Lipovitellin (LV-1N, LV 90.4 7.6 0.00026 46.6 18.8 138 556-711 393-540 (1056)
280 3l9t_A Putative uncharacterize 90.3 3.2 0.00011 39.2 12.0 128 561-715 78-208 (240)
281 3c2g_A SYS-1 protein; beta-cat 89.6 7.5 0.00026 38.5 14.2 133 532-670 262-400 (619)
282 4fs7_A Uncharacterized protein 87.7 0.094 3.2E-06 55.7 -0.3 145 101-263 228-376 (394)
283 3u0r_A Apoptosis inhibitor 5; 87.6 5.1 0.00017 42.1 12.3 93 655-759 39-132 (507)
284 4hat_C Exportin-1; heat repeat 87.0 9.8 0.00033 45.4 16.4 215 381-629 18-263 (1023)
285 3ibv_A Exportin-T; karyopherin 86.4 12 0.0004 44.6 16.6 219 481-724 20-273 (980)
286 3eg5_B Protein diaphanous homo 86.1 14 0.00049 38.2 15.2 150 419-572 101-282 (383)
287 3gjx_A Exportin-1; transport, 86.0 9.2 0.00031 45.6 15.2 215 381-629 30-275 (1073)
288 3u0r_A Apoptosis inhibitor 5; 85.9 4.6 0.00016 42.3 11.0 98 377-496 63-161 (507)
289 2f31_A Diaphanous protein homo 85.8 6.8 0.00023 37.4 11.8 145 553-703 42-217 (233)
290 2f31_A Diaphanous protein homo 85.8 13 0.00043 35.5 13.6 151 419-573 35-217 (233)
291 3eg5_B Protein diaphanous homo 85.4 16 0.00053 37.9 15.1 161 548-743 104-281 (383)
292 3a6p_A Exportin-5; exportin-5, 85.1 37 0.0013 41.4 20.6 285 391-715 25-381 (1204)
293 4h09_A Hypothetical leucine ri 81.3 0.74 2.5E-05 48.3 3.1 131 123-270 215-352 (379)
294 3s4w_B Protein FACD2, fanconi 78.3 43 0.0015 40.4 16.7 265 473-760 161-471 (1323)
295 3a6p_A Exportin-5; exportin-5, 75.1 75 0.0026 38.7 18.5 207 482-714 26-276 (1204)
296 3qml_C Protein SLS1, nucleotid 74.4 64 0.0022 31.7 13.9 145 383-541 26-188 (315)
297 2bnx_A Diaphanous protein homo 73.1 59 0.002 33.6 14.6 150 420-573 40-221 (386)
298 2bnx_A Diaphanous protein homo 71.4 35 0.0012 35.3 12.4 145 553-703 46-221 (386)
299 3gjx_A Exportin-1; transport, 70.2 43 0.0015 39.9 14.2 226 512-759 27-278 (1073)
300 4h09_A Hypothetical leucine ri 69.6 2.3 7.9E-05 44.4 3.0 123 148-287 214-342 (379)
301 3s4w_B Protein FACD2, fanconi 69.5 1.7E+02 0.0058 35.4 18.8 180 474-674 312-508 (1323)
302 3ldz_A STAM-1, signal transduc 68.3 9.6 0.00033 32.9 6.2 69 430-498 44-114 (140)
303 1x5b_A Signal transducing adap 64.6 13 0.00045 33.0 6.4 68 430-497 54-124 (163)
304 3qml_C Protein SLS1, nucleotid 63.0 1.1E+02 0.0039 29.9 13.0 148 432-584 26-189 (315)
305 3g2s_A C-terminal fragment of 60.4 18 0.00061 31.5 6.4 70 429-498 49-126 (149)
306 1mhq_A ADP-ribosylation factor 56.5 15 0.00051 32.0 5.2 69 430-498 40-116 (148)
307 3rfe_A Platelet glycoprotein I 55.9 8 0.00027 32.9 3.3 35 206-240 32-68 (130)
308 3zyq_A Hepatocyte growth facto 55.3 21 0.00071 33.8 6.4 73 599-673 44-118 (226)
309 1juq_A ADP-ribosylation factor 52.6 20 0.0007 32.1 5.6 69 430-498 52-128 (171)
310 3zyq_A Hepatocyte growth facto 51.2 23 0.00079 33.5 6.0 69 430-498 47-118 (226)
311 3ldz_A STAM-1, signal transduc 48.1 56 0.0019 28.0 7.5 72 379-456 42-113 (140)
312 1dvp_A HRS, hepatocyte growth 45.1 37 0.0012 31.9 6.4 73 599-673 41-115 (220)
313 1x5b_A Signal transducing adap 43.9 30 0.001 30.7 5.2 72 686-757 53-126 (163)
314 3gae_A Protein DOA1; UFD3, CDC 42.1 93 0.0032 29.8 8.8 131 531-674 72-218 (253)
315 4atg_A TAF6; transcription, TF 40.9 2.1E+02 0.0072 26.0 10.6 112 471-584 42-162 (196)
316 1dvp_A HRS, hepatocyte growth 40.9 34 0.0012 32.1 5.4 68 430-497 44-114 (220)
317 3g2s_A C-terminal fragment of 38.6 57 0.0019 28.3 6.0 75 599-673 47-126 (149)
318 1vsy_5 Proteasome activator BL 36.9 1.5E+02 0.0051 35.0 11.1 178 523-714 143-365 (997)
319 3gs3_A Symplekin, LD45768P; he 35.6 3E+02 0.01 26.3 21.7 88 528-627 30-117 (257)
320 1mhq_A ADP-ribosylation factor 35.1 38 0.0013 29.4 4.4 70 642-714 39-116 (148)
321 3o2t_A Symplekin; heat repeat, 34.2 4E+02 0.014 27.3 14.1 64 428-496 63-127 (386)
322 3gae_A Protein DOA1; UFD3, CDC 34.0 46 0.0016 32.0 5.2 103 609-714 99-217 (253)
323 2xpp_A IWS1, ECU08_0440; trans 33.2 1.9E+02 0.0065 24.8 8.3 78 591-672 52-135 (145)
324 1elk_A Target of MYB1; superhe 32.2 78 0.0027 27.7 6.0 69 430-498 55-130 (157)
325 1juq_A ADP-ribosylation factor 32.2 51 0.0017 29.4 4.8 70 642-714 51-128 (171)
326 4atg_A TAF6; transcription, TF 31.5 2.4E+02 0.0081 25.7 9.1 115 511-629 41-162 (196)
327 3o2t_A Symplekin; heat repeat, 30.7 4.5E+02 0.015 26.8 21.5 65 554-627 63-127 (386)
328 1elk_A Target of MYB1; superhe 26.1 69 0.0024 28.1 4.5 74 600-673 53-130 (157)
329 3rfe_A Platelet glycoprotein I 22.9 23 0.00079 30.0 0.7 36 228-265 32-67 (130)
330 2lz0_A Uncharacterized protein 21.6 51 0.0017 26.3 2.5 11 252-262 42-52 (100)
331 1vsy_5 Proteasome activator BL 20.6 8.5E+02 0.029 28.6 13.6 183 430-627 135-363 (997)
No 1
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.2e-36 Score=332.71 Aligned_cols=372 Identities=23% Similarity=0.259 Sum_probs=317.0
Q ss_pred HHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHh
Q 003227 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (837)
Q Consensus 376 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (837)
|+..+||.|+++|.++++++|..|+.+|.+++..+.++ +..+++.|+||.||.+|+++++.+|..|+++|.+|
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~-------k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL 117 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKV-------KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-------HHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999998755543 77899999999999999999999999999999999
Q ss_pred cc--ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh----------
Q 003227 456 SV--NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW---------- 522 (837)
Q Consensus 456 ~~--~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~---------- 522 (837)
+. +++++..|++.|+|+.|+++|++ .+..+++.|+.+|++|+.+++++..+++ ++++.|++++..+
T Consensus 118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~ 196 (584)
T 3l6x_A 118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNE 196 (584)
T ss_dssp TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC-----
T ss_pred HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccc
Confidence 98 48999999999999999999997 6889999999999999999999999996 5799999987311
Q ss_pred -----CCCCHHHHHHHHHHHHHhhcCC-CchHHHHhc-CcHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCCC---
Q 003227 523 -----SSGGDGVLERAAGALANLAADD-KCSMEVALA-GGVHALVMLARSC-----KFEGVQEQAARALANLAAHGD--- 587 (837)
Q Consensus 523 -----~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~-g~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~--- 587 (837)
+..+++++++|+++|+||+.+. +.+..+++. |+++.|+.++++. .+...++.|+++|+||+...+
T Consensus 197 ~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~ 276 (584)
T 3l6x_A 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI 276 (584)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence 2346799999999999999965 568999987 5678999999752 346788999999999997521
Q ss_pred -------------------CCCcccchhhccchHHHHHHHcC-CCCHHHHHHHHHHHHhhcCCh-----hhHHHHHHcCC
Q 003227 588 -------------------SNSNNSAVGQEAGALEALVQLTR-SPHEGVRQEAAGALWNLSFDD-----RNREAIAAAGG 642 (837)
Q Consensus 588 -------------------~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~-----~~~~~l~~~g~ 642 (837)
........+.+.++++.|+.+|+ +.++.+++.|+++|.||+... ..+..+.+.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g 356 (584)
T 3l6x_A 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA 356 (584)
T ss_dssp TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence 01122233445577888999995 468999999999999998753 23445566789
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccC--------CHHHHHHHHHHHHHHcC
Q 003227 643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSE--------AEDVHETAAGALWNLAF 714 (837)
Q Consensus 643 i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~--------~~~v~~~a~~~L~~l~~ 714 (837)
++.|+.+|.+ ++..++..|+++|.|++.++.++..| ..|+++.|+++|.++ +++++..|+++|.|++.
T Consensus 357 lp~Lv~LL~s---~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 357 LSAIADLLTN---EHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHGGGC---SCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 9999999988 89999999999999999988888766 678999999999765 47899999999999965
Q ss_pred -CcccHHHHHHcCCHHHHHHHHhcC-CcHHHHHHHHHHHHHhhCCCC
Q 003227 715 -NPGNALRIVEEGGVPALVHLCSSS-GSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 715 -~~~~~~~i~~~~~i~~L~~ll~~~-~~~~~~~~a~~aL~~l~~~~~ 759 (837)
++.++..+.+.|+++.|+.++.++ .++.+++.|+.+|.++.....
T Consensus 433 ~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 788999999999999999999885 468999999999999976443
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.2e-35 Score=321.85 Aligned_cols=368 Identities=23% Similarity=0.248 Sum_probs=312.9
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC-
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~- 458 (837)
.+|.++++|+++++++|..|+.+|.+++..++.. +..+++.|++|.|+++|+++++.+|..|+++|.+++.+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-------~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-------KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-------HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999999998655443 55789999999999999999999999999999999985
Q ss_pred hHHHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh------CC-------
Q 003227 459 AKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW------SS------- 524 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~------~~------- 524 (837)
++++..+++.|+++.|+++|+ ++++++++.|+++|+||+.+++++..+.+ |++|.|+.++..+ ..
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~ 154 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------C
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccc
Confidence 999999999999999999999 78999999999999999999999999999 9999999999310 11
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchHHHHhc-CcHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCC------------
Q 003227 525 GGDGVLERAAGALANLAADDKCSMEVALA-GGVHALVMLARSC-----KFEGVQEQAARALANLAAHG------------ 586 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~------------ 586 (837)
.++++.+.|+++|+||+.+++++..+++. |+++.|+.++.++ .+..+...++.+|.|++...
T Consensus 155 ~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 35678889999999999998888999998 9999999999862 23567788999999987310
Q ss_pred -----------------------------------CCCCcccchhhccchHHHHHHHcCC-CCHHHHHHHHHHHHhhcCC
Q 003227 587 -----------------------------------DSNSNNSAVGQEAGALEALVQLTRS-PHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 587 -----------------------------------~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~ 630 (837)
...+.....+.+.++++.|+.+|.+ +++.+++.|+++|.|++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 0012233456678899999999875 4789999999999999985
Q ss_pred hhh------HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCC------
Q 003227 631 DRN------REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEA------ 698 (837)
Q Consensus 631 ~~~------~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~------ 698 (837)
... +..+.+.|+++.|+++|.+ ++.+++..|+++|.|++.+++++..+. .|++++|+++|.+++
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~---~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQS---GNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhC---CCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCc
Confidence 321 3334468999999999987 899999999999999999887776665 479999999998763
Q ss_pred HHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 699 EDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 699 ~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
+++...++++|.++.. +++....+.+.|+++.|++++.+++++.++..|++.|.++....+
T Consensus 391 ~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 4788899999999976 667778888999999999999988458899999999999986543
No 3
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1e-34 Score=325.49 Aligned_cols=362 Identities=17% Similarity=0.186 Sum_probs=316.8
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhcc-C
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV-N 458 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-~ 458 (837)
|+.+++.+.++|++.|..|+..+++|.+.+.. ...+.+++.|+||.||++|++ +++.+|..|+++|.|++. +
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~------ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQ------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSC------CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC------chHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999999998754332 125789999999999999986 578999999999999987 7
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhC--CCCHHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWS--SGGDGVLERAAG 535 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~--~~~~~~~~~a~~ 535 (837)
++.+..+++.|+|+.|+++|+++++.+++.|+++|+||+.+ ++.+..+.+.|++++|+.++.... .....+.+.+++
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 88999999999999999999999999999999999999975 588999999999999999996411 123467889999
Q ss_pred HHHHhhcCCCch-HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCH
Q 003227 536 ALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (837)
Q Consensus 536 ~L~~l~~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 614 (837)
+|.+++.+.... ......++++.|+.++.+.+ ++++..|+++|.+++.. ..+....+.+.|+++.|+.+|.+++.
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~ 288 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGATEL 288 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSS---CHHHHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc---hhhhHHHHHhcccchhhhhhhcCCCh
Confidence 999999965444 33344578999999999875 89999999999999985 44556677789999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHH
Q 003227 615 GVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIA 692 (837)
Q Consensus 615 ~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~ 692 (837)
.++..++.+|+|++.. +..+..+++.|+++.|+.++.+ .++.++..|+++|.|++.. +..+..+.+.|+++.|+.
T Consensus 289 ~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred hhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC---CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence 9999999999999876 5668889999999999999987 8999999999999999975 667788889999999999
Q ss_pred HhccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 693 LARSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 693 lL~s~~~~v~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
++++++.+++..|+++|.|++. +++....+++.|++++|+++|.+.+ +.++..++.+|.++..
T Consensus 366 lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 5566778999999999999999876 7899999999999864
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-34 Score=326.15 Aligned_cols=373 Identities=21% Similarity=0.190 Sum_probs=317.0
Q ss_pred chhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCc----HHHHHHHHhcC--ChhH
Q 003227 371 GLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGG----IRLLLDLAKSW--REGL 444 (837)
Q Consensus 371 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~----i~~Lv~lL~~~--~~~~ 444 (837)
..+.++.+.|+|.|+.+++++++.++..|+.+|++++.......+ ......|+ ++.++++|.++ ++++
T Consensus 322 ~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~------~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v 395 (810)
T 3now_A 322 DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAA------IRPFGDGAALKLAEACRRFLIKPGKDKDI 395 (810)
T ss_dssp HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTS------CCSSTTTHHHHHHHHHHHHHHCSSCCSSH
T ss_pred HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCcc------ccchhhccHHHHHHHHHHHhcCCCCCHHH
Confidence 455556667789999999999999999999999999754321111 01223344 55678888887 8999
Q ss_pred HHHHHHHHHHhccChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCcc----------------------
Q 003227 445 QSEAAKAIANLSVNAKVAKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE---------------------- 501 (837)
Q Consensus 445 ~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~---------------------- 501 (837)
+..|+++|.+++.+++.+..++. .|+++.|+++++++++.++..|+++|.||+...+
T Consensus 396 ~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~ 475 (810)
T 3now_A 396 RRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE 475 (810)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc
Confidence 99999999999999999999985 6789999999999999999999999999997432
Q ss_pred --------ch---HHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHH
Q 003227 502 --------HK---GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEG 570 (837)
Q Consensus 502 --------~~---~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~ 570 (837)
++ +.+++.|++|.|+.++. ++++.+++.|+++|.|++.+++++..+++.|+++.|+.++.+++ +.
T Consensus 476 ~~ld~~~~v~~r~~~VveaGaVp~LV~LL~---s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~-~~ 551 (810)
T 3now_A 476 HELDDVDFINKRITVLANEGITTALCALAK---TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGT-EK 551 (810)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHT---CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSC-HH
T ss_pred cccccHHHHHHHHHHHHHCcCHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCC-HH
Confidence 12 68889999999999995 58899999999999999999889999999999999999999886 78
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccc-hhhccchHHHHHHHcCCC-CHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHH
Q 003227 571 VQEQAARALANLAAHGDSNSNNSA-VGQEAGALEALVQLTRSP-HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALV 647 (837)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~ 647 (837)
.++.|+++|.+++...+ +.... .....+++++|+.+|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+
T Consensus 552 ~k~~Aa~AL~nL~~~~~--p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv 629 (810)
T 3now_A 552 GKRHATQALARIGITIN--PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIE 629 (810)
T ss_dssp HHHHHHHHHHHHHHHSC--HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC--hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 89999999999987432 11100 001246899999999865 445567899999999998 57789999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhc-cCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHH-
Q 003227 648 VLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR-EGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVE- 724 (837)
Q Consensus 648 ~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~-~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~- 724 (837)
.++.+ +++.++..|+++|+|++.+++.+..+.+ .|+++.|+.++.+++..++..|+++|.+++. ++...+.+++
T Consensus 630 ~LL~s---~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~ 706 (810)
T 3now_A 630 YYLME---DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI 706 (810)
T ss_dssp HHHHS---CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS
T ss_pred HHHcC---CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99997 8899999999999999999888888775 6899999999999999999999999999998 7788888998
Q ss_pred cCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 725 EGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 725 ~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.|+++.|++++.+++ +.+|..|+++|.|+..+..
T Consensus 707 ~g~I~~Lv~LL~s~d-~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 707 ASWLDILHTLIANPS-PAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp TTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHCCCC-HHHHHHHHHHHHHHHhCCH
Confidence 899999999999875 8899999999999987644
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=314.02 Aligned_cols=367 Identities=23% Similarity=0.278 Sum_probs=292.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC------------ChhHHHHH
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW------------REGLQSEA 448 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~------------~~~~~~~a 448 (837)
++.|+.++.+.+++. ....|..+.. .+..+..+++.|++|.||++|+.. ++++|..|
T Consensus 34 ~~~l~~~~~~~~~~~---~~~~ll~~~~--------~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 34 VYSLLSMLGTHDKDD---MSRTLLAMSS--------SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp -----------CCHH---HHHHHHHHHS--------STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHH---HHHHHHHHHc--------CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 577888887766553 3444444332 233567899999999999999974 26999999
Q ss_pred HHHHHHhcc-ChHHHHHHHHcCCH----------HHHHHHHhcCC--HH-----HHH-------HHHHHHHhhccCccch
Q 003227 449 AKAIANLSV-NAKVAKAVAEEGGI----------NILAVLARSMN--RL-----VAE-------EAAGGLWNLSVGEEHK 503 (837)
Q Consensus 449 ~~~L~~l~~-~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----~~~-------~a~~~L~~l~~~~~~~ 503 (837)
+++|.|++. .++......+.|.+ +.+++++++.. .+ +++ .|+++|+|++.++++|
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R 182 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR 182 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHH
Confidence 999999998 67766776666666 55566665532 12 444 8999999999999999
Q ss_pred HHHHhhCCHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhcCCC-chHHHHhc-CcHHHHHHHHhcCCCHHHHH
Q 003227 504 GAIADAGGVKALVDLIFKW--------SSGGDGVLERAAGALANLAADDK-CSMEVALA-GGVHALVMLARSCKFEGVQE 573 (837)
Q Consensus 504 ~~l~~~g~i~~L~~lL~~~--------~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~-g~i~~L~~ll~~~~~~~~~~ 573 (837)
..+.+.|++++|+.+|... ...++.+++.|+++|.||+.+++ ++..+... |+|+.|+.+|.+++ ++++.
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~-~~v~~ 261 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES-EDLQQ 261 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC-HHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC-HHHHH
Confidence 9999999999999999521 11346789999999999999765 56666554 56999999999765 99999
Q ss_pred HHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH-cCCCCHHHHHHHHHHHHhhcC-ChhhHHHHH-HcCCHHHHHHHH
Q 003227 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQL-TRSPHEGVRQEAAGALWNLSF-DDRNREAIA-AAGGVEALVVLA 650 (837)
Q Consensus 574 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~~Ls~-~~~~~~~l~-~~g~i~~L~~ll 650 (837)
.|+++|.||+... +..++..+.+.|+++.|+++ +++.++.+++.|+.+|+||+. .++++..++ ..|+++.|+.+|
T Consensus 262 ~A~~aL~nLs~~~--~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL 339 (458)
T 3nmz_A 262 VIASVLRNLSWRA--DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339 (458)
T ss_dssp HHHHHHHHHTSSC--CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT
T ss_pred HHHHHHHHHhcCC--CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh
Confidence 9999999999742 34577888899999999997 566789999999999999999 678888887 789999999999
Q ss_pred hhcCC-CCHHHHHHHHHHHHhccc----CccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHH
Q 003227 651 QSCSN-ASPGLQERAAGALWGLSV----SEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVE 724 (837)
Q Consensus 651 ~~~~~-~~~~v~~~A~~~L~~l~~----~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~ 724 (837)
.+..+ ...++++.|+++|.|++. +++++..+.+.|++++|+.+|++++.++++.|+++|+|++. +++++..+++
T Consensus 340 ~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~ 419 (458)
T 3nmz_A 340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD 419 (458)
T ss_dssp TCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 86111 112599999999999995 78889999999999999999999999999999999999995 7889999999
Q ss_pred cCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcch
Q 003227 725 EGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEF 762 (837)
Q Consensus 725 ~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~ 762 (837)
.|+++.|++++.+++ +.+++.|++||.++..+++..+
T Consensus 420 ~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTCCSCC-
T ss_pred CCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHhhh
Confidence 999999999999875 8899999999999999887543
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=7.9e-34 Score=320.40 Aligned_cols=363 Identities=17% Similarity=0.187 Sum_probs=317.7
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhcc-
Q 003227 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV- 457 (837)
Q Consensus 380 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~- 457 (837)
.++.+++.+.++|++.+..|+..+.++.+.+... ..+.+++.|++|.|+++|++ +++.+|..|+++|.+++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~------~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~ 150 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQP------PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 150 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCC------CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCc------hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence 4688999999999999999999999876543321 25678999999999999975 579999999999999998
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhC--CCCHHHHHHHH
Q 003227 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWS--SGGDGVLERAA 534 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~--~~~~~~~~~a~ 534 (837)
+++.+..+++.|+|+.|+.++.++++.+++.|+++|++|+.+ ++++..+.+.|++++|+.++.... .....+.+.++
T Consensus 151 ~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 678889999999999999999999999999999999999975 689999999999999999996411 12346788999
Q ss_pred HHHHHhhcCCCch-HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCC
Q 003227 535 GALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (837)
Q Consensus 535 ~~L~~l~~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 613 (837)
++|.+++.+.... ......++++.|+.++.+.+ ++++..|+++|.+++.. ..+....+.+.|+++.|+.+|.+++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~a~~aL~~l~~~---~~~~~~~v~~~g~i~~Lv~lL~~~~ 306 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGATE 306 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSS---CHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhh---hhhhHHHHHhccchHHHHHHhcCCC
Confidence 9999999865443 33444578999999999876 89999999999999986 4455667778999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHH
Q 003227 614 EGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLI 691 (837)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~ 691 (837)
+.++..|+.+|+|++.+ +..+..+.+.|+++.|+.++.+ +++.++..|+++|.|++.. +..+..+.+.|+++.|+
T Consensus 307 ~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv 383 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383 (529)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence 99999999999999876 5668889999999999999987 8999999999999999975 66677888999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 692 ALARSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 692 ~lL~s~~~~v~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
.++.+++.+++..|+++|.|++. +++....+++.|++++|+++|.+.+ +.++..++.+|.++..
T Consensus 384 ~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 4566678999999999999999876 7789999999999864
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-34 Score=327.87 Aligned_cols=359 Identities=21% Similarity=0.170 Sum_probs=312.5
Q ss_pred HHHHHHhhhcC--CHHHHHHHHHHhhccccccCcccccchhhHHHHH-HhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 003227 381 AGLLLSLMQST--QEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 381 i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (837)
++.++++|.++ +++++..|+++|..|+.. +..+..++ +.|++|.|+.+|+++++.++..|+++|.|++.
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~--------~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD--------AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--------HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--------cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 57888999777 889999999999997643 44455665 68999999999999999999999999999997
Q ss_pred Ch------------------------------HHH---HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchH
Q 003227 458 NA------------------------------KVA---KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG 504 (837)
Q Consensus 458 ~~------------------------------~~~---~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 504 (837)
+. ..+ +.+++.|+++.|+++++++++.+++.|+++|.||+.+++++.
T Consensus 451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~ 530 (810)
T 3now_A 451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRG 530 (810)
T ss_dssp CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 32 133 788999999999999999999999999999999999889999
Q ss_pred HHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHH---HhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003227 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV---ALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l---~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (837)
.+++.|++++|+.+|. ++++..++.|+++|.+++.+.+....+ ...|++++|+.+|.+..+...+..|+++|.|
T Consensus 531 ~Vv~~Gaip~Lv~LL~---s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 531 KVVQEGGVKALLRMAL---EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHc---cCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 9999999999999996 478889999999999999754332211 1236999999999865444556789999999
Q ss_pred HhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHH-cCCHHHHHHHHhhcCCCCHHH
Q 003227 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAA-AGGVEALVVLAQSCSNASPGL 660 (837)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~v 660 (837)
|+.. +++++..+.+.|+++.|+.++.++++.+++.|+++|+||+.+++.+..+++ .|+++.|+.++.+ .+..+
T Consensus 608 La~~---~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s---~d~~v 681 (810)
T 3now_A 608 LASM---NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED---EDEET 681 (810)
T ss_dssp HTTS---CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC---SSHHH
T ss_pred HhcC---CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC---CCHHH
Confidence 9986 456677788899999999999999999999999999999999888888876 6899999999987 89999
Q ss_pred HHHHHHHHHhccc-Cccchhhhhc-cCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhc
Q 003227 661 QERAAGALWGLSV-SEANCIAIGR-EGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSS 737 (837)
Q Consensus 661 ~~~A~~~L~~l~~-~~~~~~~l~~-~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~ 737 (837)
+.+|+++|++++. ++...+.+.+ .|++++|+++|.+++.+++..|+++|.|++. +++....+.+.|++++|++++..
T Consensus 682 q~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~ 761 (810)
T 3now_A 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQL 761 (810)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 9999999999998 6777778888 8999999999999999999999999999986 56677889999999999999976
Q ss_pred C--CcHHHHHHHHHHHHHhhC
Q 003227 738 S--GSKMARFMAALALAYMFD 756 (837)
Q Consensus 738 ~--~~~~~~~~a~~aL~~l~~ 756 (837)
+ .+..+.+.|..+|.++..
T Consensus 762 ~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 762 PDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TTSTTHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHh
Confidence 5 368899999999999864
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.9e-33 Score=313.69 Aligned_cols=374 Identities=20% Similarity=0.184 Sum_probs=317.8
Q ss_pred hcCcCchhhHHHhhhHHHHHHhhh-cCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhH
Q 003227 366 ESNPQGLDDFWLKQGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGL 444 (837)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 444 (837)
+.+| ....+++.|+||.|+++|+ ++++++|..|+++|++++.++.++ ...+++.|++|.|+.+|+++++++
T Consensus 88 e~~p-pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~-------~~~vv~~GaIp~Lv~lL~s~~~~v 159 (510)
T 3ul1_B 88 EKQP-PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-------TKAVVDGGAIPAFISLLASPHAHI 159 (510)
T ss_dssp SSCC-CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred CCCc-hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHHCCCHHHHHHHHcCCCHHH
Confidence 4555 4566688888999999996 456899999999999999765544 678999999999999999999999
Q ss_pred HHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcC-----CHHHHHHHHHHHHhhccCcc-chHHHHhhCCHHHHHH
Q 003227 445 QSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSM-----NRLVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVD 517 (837)
Q Consensus 445 ~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ 517 (837)
+..|+++|++++. +++.+..+.+.|+++.|+.++... ...+.+.+++++.+++.+.. ........++++.|+.
T Consensus 160 ~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~ 239 (510)
T 3ul1_B 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239 (510)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHH
Confidence 9999999999998 578899999999999999999764 34578889999999998653 3344445678999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCch-HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchh
Q 003227 518 LIFKWSSGGDGVLERAAGALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (837)
Q Consensus 518 lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (837)
++. +.+++++..|+++|++|+.++..+ ..+.+.|+++.|+.++.+.+ ..++..++++|.|++.. ++.....+
T Consensus 240 LL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~---~~~~~~~i 312 (510)
T 3ul1_B 240 LLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTG---TDEQTQKV 312 (510)
T ss_dssp HTT---CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTS---CHHHHHHH
T ss_pred HHh---cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcC---CHHHHHHH
Confidence 994 588999999999999999876544 66778899999999999876 89999999999999886 55667778
Q ss_pred hccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc--
Q 003227 597 QEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-- 673 (837)
Q Consensus 597 ~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-- 673 (837)
.+.|+++.|+.+|+++++.+++.|+++|.|++.+ ...+..+.+.|+++.|+.++.+ ++..++.+|+++|.|++.
T Consensus 313 ~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK---ADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHC
T ss_pred hhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHccC
Confidence 8999999999999999999999999999999986 5668888999999999999998 899999999999999986
Q ss_pred CccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCC-------cccHHHHHHcCCHHHHHHHHhcCCcHHHHHH
Q 003227 674 SEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN-------PGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (837)
Q Consensus 674 ~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~-------~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~ 746 (837)
+++....+.+.|++++|+++|++.+++++..++++|.|+... ...+..+.+.||+..|-.+..+. ++.++..
T Consensus 390 ~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~-n~~i~~~ 468 (510)
T 3ul1_B 390 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE-NESVYKA 468 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHH
Confidence 466777899999999999999999999999999999998641 11223455778888877765554 5889999
Q ss_pred HHHHHHHhhCCC
Q 003227 747 AALALAYMFDGR 758 (837)
Q Consensus 747 a~~aL~~l~~~~ 758 (837)
|...|.......
T Consensus 469 A~~iie~yf~~~ 480 (510)
T 3ul1_B 469 SLNLIEKYFSVE 480 (510)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHCCCc
Confidence 999998876543
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.1e-32 Score=311.14 Aligned_cols=373 Identities=20% Similarity=0.183 Sum_probs=318.9
Q ss_pred hcCcCchhhHHHhhhHHHHHHhhh-cCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhH
Q 003227 366 ESNPQGLDDFWLKQGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGL 444 (837)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 444 (837)
+.+| ....+++.|+||.|+++|. +++++++..|+++|++++..+.++ ...+++.|++|.|+.+|.++++.+
T Consensus 107 ~~~~-~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~-------~~~vv~~Gaip~Lv~LL~s~~~~v 178 (529)
T 3tpo_A 107 EKQP-PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-------TKAVVDGGAIPAFISLLASPHAHI 178 (529)
T ss_dssp SSCC-CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred CCCc-hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHCCCHHHHHHHHcCCCHHH
Confidence 3444 5677788888999999995 556999999999999999765543 568999999999999999999999
Q ss_pred HHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcC-----CHHHHHHHHHHHHhhccCcc-chHHHHhhCCHHHHHH
Q 003227 445 QSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSM-----NRLVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVD 517 (837)
Q Consensus 445 ~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ 517 (837)
+..|+++|++++. +++.+..+.+.|+++.|+.++..+ ...+.+.++++|.+++.+.. ........+++|.|+.
T Consensus 179 ~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~ 258 (529)
T 3tpo_A 179 SEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 258 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH
Confidence 9999999999998 578999999999999999999754 35678899999999998653 3344445678999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCc-hHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchh
Q 003227 518 LIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (837)
Q Consensus 518 lL~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (837)
++. +.+++++..|+++|.+++..++. ...+++.|+++.|+.++.+.+ ..++..++.+|.|++.. ++.....+
T Consensus 259 LL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~---~~~~~~~i 331 (529)
T 3tpo_A 259 LLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTG---TDEQTQKV 331 (529)
T ss_dssp HTT---SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTS---CHHHHHHH
T ss_pred Hhc---CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHHHHHHHHHHHcc---chHHHHHH
Confidence 994 58899999999999999987654 466778899999999999876 89999999999999986 55667778
Q ss_pred hccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc--
Q 003227 597 QEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-- 673 (837)
Q Consensus 597 ~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-- 673 (837)
.+.|+++.|+.+|.++++.+++.|+++|.|++.+ +..+..+.+.|+++.|+.++.+ ++..++..|+++|+|++.
T Consensus 332 ~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 332 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK---ADFKTQKAAAWAITNYTSGG 408 (529)
T ss_dssp HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHS
T ss_pred hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999986 5668888999999999999998 899999999999999986
Q ss_pred CccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC---C----cccHHHHHHcCCHHHHHHHHhcCCcHHHHHH
Q 003227 674 SEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF---N----PGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (837)
Q Consensus 674 ~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~---~----~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~ 746 (837)
+++....+.+.|++++|+++|.+.+++++..++.+|.++.. . ...+..+.+.||+..|-.+..+. ++.++..
T Consensus 409 ~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~-n~~i~~~ 487 (529)
T 3tpo_A 409 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE-NESVYKA 487 (529)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCS-SHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCC-CHHHHHH
Confidence 46667789999999999999999999999999999999864 1 11233456789999887776655 5889999
Q ss_pred HHHHHHHhhCC
Q 003227 747 AALALAYMFDG 757 (837)
Q Consensus 747 a~~aL~~l~~~ 757 (837)
|...|......
T Consensus 488 A~~iie~yf~~ 498 (529)
T 3tpo_A 488 SLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHCCC
Confidence 99999877654
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=304.38 Aligned_cols=335 Identities=23% Similarity=0.263 Sum_probs=282.6
Q ss_pred hcCcCchhhHHHhhhHHHHHHhhhcC------------CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcH---
Q 003227 366 ESNPQGLDDFWLKQGAGLLLSLMQST------------QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGI--- 430 (837)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~L~~ll~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i--- 430 (837)
+.+++....+++.|++|.|+++|+.. +++++..|+++|.+++.++.+. .....+.|++
T Consensus 57 ~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~-------~~~~~~~~~~~~l 129 (458)
T 3nmz_A 57 SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDD-------KRGRREIRVLHLL 129 (458)
T ss_dssp HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSC-------HHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcch-------hHHHHHHHHHHHH
Confidence 34555556667777899999999753 3799999999999999988765 3345555666
Q ss_pred -------HHHHHHHhcCC--hh-----HHH-------HHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc---------
Q 003227 431 -------RLLLDLAKSWR--EG-----LQS-------EAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--------- 480 (837)
Q Consensus 431 -------~~Lv~lL~~~~--~~-----~~~-------~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~--------- 480 (837)
+.+++++.+.. .+ ++. .|+++|.|++.++++|..+++.|++++|+.+|..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~ 209 (458)
T 3nmz_A 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN 209 (458)
T ss_dssp HHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCC
T ss_pred HHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhccccccc
Confidence 56677777642 22 333 8999999999999999999999999999999952
Q ss_pred --CCHHHHHHHHHHHHhhccCcc-chHHHHhh-CCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CCchHHHHhcC
Q 003227 481 --MNRLVAEEAAGGLWNLSVGEE-HKGAIADA-GGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKCSMEVALAG 554 (837)
Q Consensus 481 --~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g 554 (837)
.++.+++.|+++|.||+.+++ ++..+... |++|.|+.+|. ++++++++.|+++|+||+.. ++++..+++.|
T Consensus 210 ~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~---s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 210 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK---SESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 347789999999999998664 66677654 45999999995 58899999999999999984 56889999999
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh-ccchHHHHHHHcCCCCH----HHHHHHHHHHHhhcC
Q 003227 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ-EAGALEALVQLTRSPHE----GVRQEAAGALWNLSF 629 (837)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~~Ls~ 629 (837)
+++.|+++|....++.+++.|+.+|+||+.+ .++++..+. ..|+++.|+.+|.+.++ ++++.|+++|+||+.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~---~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~ 363 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAH---CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH---CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh
Confidence 9999999876554589999999999999984 234455555 78999999999987654 499999999999994
Q ss_pred ----ChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-CccchhhhhccCChHHHHHHhccCCHHHHHH
Q 003227 630 ----DDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSEAEDVHET 704 (837)
Q Consensus 630 ----~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~ 704 (837)
++++++.+.+.|+++.|+.+|.+ ++..++++|+++|+|++. +++++..+.+.|++++|+++|+++++.+++.
T Consensus 364 ~~a~~~~~~~~i~~~G~i~~Lv~LL~~---~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~ 440 (458)
T 3nmz_A 364 LIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 440 (458)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHSSC---SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHH
T ss_pred cccCCHHHHHHHHHcccHHHHHHHHcC---CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 78889999999999999999987 899999999999999995 6889999999999999999999999999999
Q ss_pred HHHHHHHHcCCc
Q 003227 705 AAGALWNLAFNP 716 (837)
Q Consensus 705 a~~~L~~l~~~~ 716 (837)
|+++|.||+.+.
T Consensus 441 Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 441 SAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHcCC
Confidence 999999998754
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.6e-32 Score=308.45 Aligned_cols=364 Identities=20% Similarity=0.206 Sum_probs=321.5
Q ss_pred hhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCC-hhHHHHHHHHHHHhc
Q 003227 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR-EGLQSEAAKAIANLS 456 (837)
Q Consensus 378 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~ 456 (837)
...+|.+++.|.+++++++..|+.+|.+++..... .....+++.|++|.|+.+|++++ +.++..|+++|.+++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~------~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~ 146 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERS------PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 146 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSS------CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCC------chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999998765541 12567899999999999999986 999999999999999
Q ss_pred c-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHH
Q 003227 457 V-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (837)
Q Consensus 457 ~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (837)
. +++.+..+++.|+++.|+.+|+++++.+++.|+++|++|+.+ +.++..+.+.|+++.|+.++. .+.++.++..++
T Consensus 147 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--~~~~~~v~~~a~ 224 (528)
T 4b8j_A 147 SGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--EHTKLSMLRNAT 224 (528)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--TTCCHHHHHHHH
T ss_pred CCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--cCCCHHHHHHHH
Confidence 9 588999999999999999999999999999999999999975 578899999999999999995 347889999999
Q ss_pred HHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCH
Q 003227 535 GALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (837)
Q Consensus 535 ~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 614 (837)
++|.+++............|+++.|+.++.+.+ +.++..++++|.+++.. .......+.+.|+++.|+.+|.++++
T Consensus 225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~ 300 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSFEQTRPALPALARLIHSND-EEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHPSP 300 (528)
T ss_dssp HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCSCH
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcCCCh
Confidence 999999997544445556899999999998775 99999999999999975 33444566788999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHH
Q 003227 615 GVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNA-SPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLI 691 (837)
Q Consensus 615 ~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~-~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~ 691 (837)
.++..|+++|+|++.. +.....+.+.|+++.|+.+|.+ + ++.++..|+++|.|++.. ++....+.+.|+++.|+
T Consensus 301 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~ 377 (528)
T 4b8j_A 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ---NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV 377 (528)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC---CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence 9999999999999986 5667788899999999999987 6 899999999999999974 55667788899999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHcCC--cccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 692 ALARSEAEDVHETAAGALWNLAFN--PGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 692 ~lL~s~~~~v~~~a~~~L~~l~~~--~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
.+|.++++.++..|+++|.+++.. +.....+++.|+++.|+.++.+++ +.++..|+.+|.++...
T Consensus 378 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d-~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 378 NLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD-IRIVTVCLEGLENILKV 444 (528)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 677788889999999999999875 88999999999999764
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.3e-33 Score=305.82 Aligned_cols=326 Identities=25% Similarity=0.310 Sum_probs=277.2
Q ss_pred HhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC--ccc
Q 003227 426 KDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EEH 502 (837)
Q Consensus 426 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~--~~~ 502 (837)
..+.++.||.+|.++++.+|..|+++|.+++. +++++..+++.|+|+.|+++|+++++.+++.|+++|.||+.. +++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 46789999999999999999999999999997 889999999999999999999999999999999999999984 799
Q ss_pred hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHh-----------------c
Q 003227 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR-----------------S 565 (837)
Q Consensus 503 ~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~-----------------~ 565 (837)
+..+++.|+++.|+.+|.. ..+.++++.|+++|++|+.+++++..+++ ++++.|++++. +
T Consensus 126 k~~I~~~GaIp~LV~LL~s--~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRK--ARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHH--CCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHcCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 9999999999999999973 35788999999999999999999999986 57999999762 2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhc-cchHHHHHHHcCC------CCHHHHHHHHHHHHhhcCChhh-----
Q 003227 566 CKFEGVQEQAARALANLAAHGDSNSNNSAVGQE-AGALEALVQLTRS------PHEGVRQEAAGALWNLSFDDRN----- 633 (837)
Q Consensus 566 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~~~i~~L~~lL~~------~~~~~~~~a~~~L~~Ls~~~~~----- 633 (837)
.+++++++.|+++|.||+.. .++.+..+.+ .|+++.|+.++++ .+...++.|+++|+||+...+.
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~---~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~ 279 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSE---RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA 279 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC
T ss_pred cccHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch
Confidence 23579999999999999985 4454666665 5777899999864 4667999999999999976211
Q ss_pred ---------------------HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCc-----cchhhhhccCCh
Q 003227 634 ---------------------REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE-----ANCIAIGREGGV 687 (837)
Q Consensus 634 ---------------------~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~-----~~~~~l~~~~~i 687 (837)
.+.+.+.++++.|+.+|.. +.++.+++.|+++|.|++... ..+..+.+.+++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~--s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~gl 357 (584)
T 3l6x_A 280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE--SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKAL 357 (584)
T ss_dssp CC--------------CCCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHH
T ss_pred hhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcH
Confidence 1112223456788999975 368999999999999998642 345566778999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCC-------cHHHHHHHHHHHHHhhCCCCc
Q 003227 688 APLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSG-------SKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 688 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~-------~~~~~~~a~~aL~~l~~~~~~ 760 (837)
+.|+++|++++++++..|+++|.||+.++.++..| ..|+++.|+++|.+++ ++.+...|+.+|.++..+.++
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~ 436 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE 436 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999888766 7899999999998763 467889999999999877553
No 13
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.6e-32 Score=310.43 Aligned_cols=436 Identities=21% Similarity=0.221 Sum_probs=343.4
Q ss_pred hhhHHHh-hhHHHHHHhhhc-CCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHH
Q 003227 372 LDDFWLK-QGAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449 (837)
Q Consensus 372 ~~~~~~~-~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 449 (837)
...++.. ++++.|+++|.+ ++++++..|+.+|.+|+.. ++.+..+.+.|+++.|+++|+++++.++..|+
T Consensus 51 ~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~ 122 (529)
T 1jdh_A 51 RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--------REGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 122 (529)
T ss_dssp HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--------chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 3343443 568999999965 4899999999999997753 34577899999999999999999999999999
Q ss_pred HHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCH
Q 003227 450 KAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGD 527 (837)
Q Consensus 450 ~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~ 527 (837)
++|.+++. +++.+..+.+.|+++.|++++++++..++..++.+|.+++. +++++..+.+.|+++.|+.+++. ....
T Consensus 123 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~--~~~~ 200 (529)
T 1jdh_A 123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYE 200 (529)
T ss_dssp HHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CCCH
T ss_pred HHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh--CChH
Confidence 99999998 46788899999999999999999999999999999999997 46899999999999999999985 4567
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHH
Q 003227 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607 (837)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~ 607 (837)
..+..++.+|++++.+++++..+++.|+++.|+.++.+++ +.++..++++|.+++..... .. ...++++.|++
T Consensus 201 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~----~~--~~~~~i~~L~~ 273 (529)
T 1jdh_A 201 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATK----QE--GMEGLLGTLVQ 273 (529)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCTT----CS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC-hHHHHHHHHHHHHHhcCChh----hH--HHHhHHHHHHH
Confidence 7888899999999999999999999999999999999875 89999999999999986321 11 23589999999
Q ss_pred HcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-cc---chhhhh
Q 003227 608 LTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EA---NCIAIG 682 (837)
Q Consensus 608 lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~---~~~~l~ 682 (837)
++.+++++++..|+++|++|+.+ ++++..+.+.|+++.|++++.+ .+.++.++..|+++|+|++.. ++ .+..+.
T Consensus 274 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~ 352 (529)
T 1jdh_A 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR-AGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352 (529)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHc-cCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 99999999999999999999997 5689999999999999999976 234589999999999999875 33 467888
Q ss_pred ccCChHHHHHHhccCC-HHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHH--hhCCCC
Q 003227 683 REGGVAPLIALARSEA-EDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAY--MFDGRM 759 (837)
Q Consensus 683 ~~~~i~~L~~lL~s~~-~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~--l~~~~~ 759 (837)
+.|+++.|+++|++++ +.++..++++|.|++.++.++..+.+.|+++.|++++.+++ +.+|..|++++.+ +..+..
T Consensus 353 ~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~l~n~~~~~~~~ 431 (529)
T 1jdh_A 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEGVR 431 (529)
T ss_dssp HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHH-HHHC-----------CBTTBC
T ss_pred HcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHh-HHHHHHHhcccCchhhhcccc
Confidence 9999999999998876 69999999999999999999999999999999999999764 7789988888887 433221
Q ss_pred -cch-----hhhccCccCcccccchhHHHHHHHHHHHHHHHhcCChhHHHHHHhccchhhhHHHHHHhhhccCCcee
Q 003227 760 -DEF-----ALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLR 830 (837)
Q Consensus 760 -~~~-----~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 830 (837)
+.+ .++..+............. .+++.+..+ +.+.++.++..+..+.+...- ....++.+.++||+.
T Consensus 432 ~~~i~~~~~~al~~L~~~~~~~~~l~~~--~~v~~l~~l-l~~~~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~ 504 (529)
T 1jdh_A 432 MEEIVEGCTGALHILARDVHNRIVIRGL--NTIPLFVQL-LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATA 504 (529)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHT--TCHHHHHHG-GGCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHhcc--CCccHHHHH-HcCCchHHHHHHHHHHHHHhc-CHHHHHHHHHcCChH
Confidence 111 0111122111000001111 245667776 777788888776654443222 233456677777764
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.9e-31 Score=298.91 Aligned_cols=409 Identities=16% Similarity=0.145 Sum_probs=336.8
Q ss_pred hhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC-ChhHHHHHHHHHHHhc
Q 003227 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLS 456 (837)
Q Consensus 378 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~ 456 (837)
...++.+++.|.+++++++..|+.+|.+++..... .....+++.|+++.|+.+|+++ ++.+|..|+++|.+++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~------~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~ 159 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHR------PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIA 159 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSS------CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCC------ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 35589999999999999999999999998764321 1145688999999999999997 8999999999999999
Q ss_pred c-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHH
Q 003227 457 V-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (837)
Q Consensus 457 ~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (837)
. +++.+..+++.|+++.|+++|+++++.+++.|+++|++++.. ++.+..+...|+++.|+.++.. .++.++..|+
T Consensus 160 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~ 236 (530)
T 1wa5_B 160 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---NKPSLIRTAT 236 (530)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---CCHHHHHHHH
Confidence 8 578889999999999999999999999999999999999976 5788899999999999999963 7889999999
Q ss_pred HHHHHhhcCC-CchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCC
Q 003227 535 GALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (837)
Q Consensus 535 ~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 613 (837)
++|++++.+. .........++++.|+.++.+.+ +.++..++++|.+++.. .+.....+.+.|+++.|+.++.+++
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~v~~Lv~lL~~~~ 312 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDG---PQEAIQAVIDVRIPKRLVELLSHES 312 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCC---CHHHHHHHHhcCcHHHHHHHHCCCC
Confidence 9999999864 44455666899999999999875 89999999999999975 3445566677899999999999999
Q ss_pred HHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-CccchhhhhccCChHHHH
Q 003227 614 EGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLI 691 (837)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~ 691 (837)
+.++..|+++|.+++.. +.....+.+.|+++.|+.+|.+ +++.++..|+++|.+++. +++....+.+.|+++.|+
T Consensus 313 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 389 (530)
T 1wa5_B 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 99999999999999986 5557778889999999999987 789999999999999996 456667788899999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHcC--Cc--ccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcchhhhcc
Q 003227 692 ALARSEAEDVHETAAGALWNLAF--NP--GNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGT 767 (837)
Q Consensus 692 ~lL~s~~~~v~~~a~~~L~~l~~--~~--~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~~~i~~ 767 (837)
.+|.++++.++..|+++|.+++. .+ .....+.+.|+++.|+.++.+++ +.++..|+.+|.++....+.....-..
T Consensus 390 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~v~~~al~aL~~l~~~~~~~~~~~~~ 468 (530)
T 1wa5_B 390 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD-NRIIEVTLDALENILKMGEADKEARGL 468 (530)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999986 33 56778889999999999999874 889999999999997643321000000
Q ss_pred CccCcccccchhHHHHHHHHHHHHHHHhcCChhHHHHHHhc
Q 003227 768 STESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAAS 808 (837)
Q Consensus 768 ~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~ 808 (837)
....... ..... .+++.|..+ +.+.+++++..+...
T Consensus 469 ~~~~~~~--~l~~~--g~~~~L~~L-~~~~~~~v~~~a~~i 504 (530)
T 1wa5_B 469 NINENAD--FIEKA--GGMEKIFNC-QQNENDKIYEKAYKI 504 (530)
T ss_dssp SSCHHHH--HHHHT--THHHHHHGG-GGCSCHHHHHHHHHH
T ss_pred cccHHHH--HHHHc--CcHHHHHHH-HcCCCHHHHHHHHHH
Confidence 0000000 01111 235566665 677788877665433
No 15
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=9e-32 Score=296.61 Aligned_cols=353 Identities=21% Similarity=0.193 Sum_probs=292.5
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHH
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAI 506 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l 506 (837)
.+|.|+.+|+++++++|..|+++|.+++. ++..+..+++.|+++.|+++|+++++.+++.|+++|.||+.. ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58899999999999999999999999997 566788999999999999999999999999999999999986 8999999
Q ss_pred HhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHh--------cC-------CCHHH
Q 003227 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR--------SC-------KFEGV 571 (837)
Q Consensus 507 ~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~--------~~-------~~~~~ 571 (837)
++.|++|.|+++|. .++++++++.|+++|+||+.+++++..+++ |+++.|+.++. +. .++++
T Consensus 83 ~~~G~i~~Lv~lL~--~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 83 RRQNGIREAVSLLR--RTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHTTCHHHHHHHHT--TCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHcCCHHHHHHHHh--hCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 99999999999996 257899999999999999999999999999 99999999993 22 24677
Q ss_pred HHHHHHHHHHHhcCCCCCCcccchhhcc-chHHHHHHHcCC------CCHHHHHHHHHHHHhhcCCh-------------
Q 003227 572 QEQAARALANLAAHGDSNSNNSAVGQEA-GALEALVQLTRS------PHEGVRQEAAGALWNLSFDD------------- 631 (837)
Q Consensus 572 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~~~~~a~~~L~~Ls~~~------------- 631 (837)
.+.|+++|.|++. .++++..+.+. |+++.|+.+|++ .+..+.+.|+.+|+||+...
T Consensus 160 ~~~a~~aL~nLs~----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 160 FFNATGCLRNLSS----ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp HHHHHHHHHHHTT----SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcc----CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 7899999999997 35677888887 999999999975 45678889999999997421
Q ss_pred --------------------------------------hhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc
Q 003227 632 --------------------------------------RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 632 --------------------------------------~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
+..+.+.+.|+++.|+.+|.+ +.++.+++.|+++|.|++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK--SKKDATLEACAGALQNLTA 313 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh--cCCHHHHHHHHHHHHHhcc
Confidence 112234455678999999987 4679999999999999997
Q ss_pred Cc-c----c-hhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCc-----HH
Q 003227 674 SE-A----N-CIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGS-----KM 742 (837)
Q Consensus 674 ~~-~----~-~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~-----~~ 742 (837)
.. . . +..+.+.|+++.|+++|.+++++++..|+++|.|++.++.++..+. .+++++|+++|..++. +.
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHH
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHH
Confidence 43 2 2 3345578999999999999999999999999999999887776554 5799999999988643 46
Q ss_pred HHHHHHHHHHHhhCCCCcchhhhccCccCcccccchhHHHHHHHHHHHHHHHhcC-ChhHHHHHHh
Q 003227 743 ARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFS-DPQAFATAAA 807 (837)
Q Consensus 743 ~~~~a~~aL~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~-~~~~~~~~~~ 807 (837)
+...++.+|.++..+.++.. .....+ .+++.|..+ +.+. ++.+++.|..
T Consensus 393 v~~~~l~~l~ni~~~~~~~~-------------~~i~~~--g~l~~L~~L-~~~~~~~~i~~~A~~ 442 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQPQLA-------------KQYFSS--SMLNNIINL-CRSSASPKAAEAARL 442 (457)
T ss_dssp HHHHHHHHHHHHHTTCTHHH-------------HHHCCH--HHHHHHHHH-HHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHH-------------HHHHHc--CCHHHHHHH-HcCCCcHHHHHHHHH
Confidence 88899999999987654321 111112 467888887 6666 8888866643
No 16
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.3e-31 Score=302.65 Aligned_cols=375 Identities=26% Similarity=0.269 Sum_probs=320.7
Q ss_pred cCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHH
Q 003227 369 PQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEA 448 (837)
Q Consensus 369 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 448 (837)
++....+...+++|.|+++|++++++++..|+.+|.+++..++.. +..+.+.|+++.|+++|+++++.++..+
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-------HHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-------HHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 335666677788999999999999999999999999998765433 5678899999999999999999999999
Q ss_pred HHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh----
Q 003227 449 AKAIANLSV-NAKVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW---- 522 (837)
Q Consensus 449 ~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~---- 522 (837)
+.+|.+++. +++.+..+.+.|+++.|++++++. ....++.++.+|++++.+++++..+.+.|+++.|+.++...
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHH
Confidence 999999998 689999999999999999999875 45677888999999999999999999988888877666420
Q ss_pred --------------------------------CCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcC-CC
Q 003227 523 --------------------------------SSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSC-KF 568 (837)
Q Consensus 523 --------------------------------~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~-~~ 568 (837)
.+.+++++..|+++|++++.+ ++.+..+.+.|+++.|++++.+. ++
T Consensus 244 ~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~ 323 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCH
Confidence 245677888888888888875 45788899999999999999863 34
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCC-HHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHH
Q 003227 569 EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH-EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALV 647 (837)
Q Consensus 569 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~ 647 (837)
+.++..|+.+|.|++......+..+..+.+.|+++.|+.+|++++ +.++..++++|+|++.+++++..+.+.|+++.|+
T Consensus 324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~ 403 (529)
T 1jdh_A 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 403 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHH
Confidence 799999999999998753222224567778899999999999876 6999999999999999988899999999999999
Q ss_pred HHHhhcCCCCHHHHHH----------------------HHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHH
Q 003227 648 VLAQSCSNASPGLQER----------------------AAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETA 705 (837)
Q Consensus 648 ~ll~~~~~~~~~v~~~----------------------A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a 705 (837)
.++.+ .++.+|.. ++.+|.+++.+++++..+.+.|+++.|+.++.+++++++..|
T Consensus 404 ~ll~~---~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a 480 (529)
T 1jdh_A 404 QLLVR---AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 480 (529)
T ss_dssp HHHHH---HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHH---HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHH
Confidence 99987 56666654 445556677777788889999999999999999999999999
Q ss_pred HHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 003227 706 AGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYM 754 (837)
Q Consensus 706 ~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l 754 (837)
+++|.+++.++..+..+.+.|+++.|.+++.+++ +.++..|..+|..+
T Consensus 481 ~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~-~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 481 AGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCC-HHHHHHHHHHHHhc
Confidence 9999999988888899999999999999998775 88999999999886
No 17
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-31 Score=307.97 Aligned_cols=374 Identities=22% Similarity=0.243 Sum_probs=313.5
Q ss_pred HHHHhhhcCcCchhhHHHh-hhHHHHHHhhhcC-CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHH
Q 003227 360 ILLRTAESNPQGLDDFWLK-QGAGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA 437 (837)
Q Consensus 360 ~l~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL 437 (837)
.+..++.... ....++.. ++++.|++.|.++ +++++..|+.+|.+|+.. ++.+..+.+.|+++.|+++|
T Consensus 37 ~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--------~~~~~~i~~~g~i~~Lv~lL 107 (644)
T 2z6h_A 37 MVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--------REGLLAIFKSGGIPALVKML 107 (644)
T ss_dssp HHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--------HHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--------hhhHHHHHHcCCHHHHHHHH
Confidence 3444554443 33333433 5589999999764 899999999999987753 33577899999999999999
Q ss_pred hcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHH
Q 003227 438 KSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKAL 515 (837)
Q Consensus 438 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L 515 (837)
+++++.++..|+++|.+++. +++.+..+++.|+++.|+++|+++++.++..++.+|.+++. +++++..+.+.|+++.|
T Consensus 108 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~L 187 (644)
T 2z6h_A 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 187 (644)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHH
Confidence 99999999999999999998 46788889999999999999999999999999999999996 67899999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccch
Q 003227 516 VDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAV 595 (837)
Q Consensus 516 ~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 595 (837)
+.+++. ...+.+++.++.+|++++.+++++..+++.|+++.|+.++.+.+ ..++..++++|.+++..... ..
T Consensus 188 v~lL~~--~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~----~~- 259 (644)
T 2z6h_A 188 VNIMRT--YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATK----QE- 259 (644)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHHHHHGGGCTT----CC-
T ss_pred HHHHHc--CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcchh----hh-
Confidence 999974 34578899999999999999999999999999999999999875 89999999999999985321 11
Q ss_pred hhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC
Q 003227 596 GQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 596 ~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
...++++.|+.+++++++++++.|+++|.+|+.+ ++++..+.+.|+++.|+.++.+ .+..+.++..|+++|.+++..
T Consensus 260 -~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 260 -GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR-AGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp -SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSS
T ss_pred -hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc-cCCcHHHHHHHHHHHHHHhcC
Confidence 2348999999999999999999999999999987 5778999999999999999986 123479999999999999864
Q ss_pred -c---cchhhhhccCChHHHHHHhccCC-HHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHH
Q 003227 675 -E---ANCIAIGREGGVAPLIALARSEA-EDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAAL 749 (837)
Q Consensus 675 -~---~~~~~l~~~~~i~~L~~lL~s~~-~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~ 749 (837)
+ ..+..+.+.|+++.|+++|++++ +.++..|+++|.|++.++.++..+++.|+++.|++++.+++ ..+|..|++
T Consensus 338 ~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~-~~vr~~a~~ 416 (644)
T 2z6h_A 338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-QDTQRRTSM 416 (644)
T ss_dssp STTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHH-HHHTTC---
T ss_pred CchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccc-hhhhhHhhh
Confidence 3 24556888999999999998765 79999999999999999999999999999999999998743 334444444
Q ss_pred HHHH
Q 003227 750 ALAY 753 (837)
Q Consensus 750 aL~~ 753 (837)
++.+
T Consensus 417 al~n 420 (644)
T 2z6h_A 417 GGTQ 420 (644)
T ss_dssp ----
T ss_pred cccc
Confidence 4433
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.3e-31 Score=297.68 Aligned_cols=372 Identities=20% Similarity=0.179 Sum_probs=324.1
Q ss_pred CchhhHHHhhhHHHHHHhhhcCC-HHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHH
Q 003227 370 QGLDDFWLKQGAGLLLSLMQSTQ-EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEA 448 (837)
Q Consensus 370 ~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 448 (837)
+....+...+++|.|+++|.+++ ++++..|+++|++++..+.+ ....+++.|+++.|+.+|.++++.++..|
T Consensus 108 ~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~-------~~~~~~~~g~i~~L~~lL~~~~~~v~~~a 180 (528)
T 4b8j_A 108 PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE-------NTKVVIDHGAVPIFVKLLGSSSDDVREQA 180 (528)
T ss_dssp CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-------HHHHHHhCCcHHHHHHHhcCCCHHHHHHH
Confidence 45666677888999999998876 99999999999999975443 46678999999999999999999999999
Q ss_pred HHHHHHhcc-ChHHHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCC
Q 003227 449 AKAIANLSV-NAKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (837)
Q Consensus 449 ~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~ 526 (837)
+++|++++. ++..+..+.+.|+++.|+.++ .+.++.++..|+++|++|+............|+++.|+.++. +.+
T Consensus 181 ~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~~ 257 (528)
T 4b8j_A 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH---SND 257 (528)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT---CCC
T ss_pred HHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC---CCC
Confidence 999999998 477899999999999999999 668999999999999999987555555566889999999994 588
Q ss_pred HHHHHHHHHHHHHhhcCCCch-HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 003227 527 DGVLERAAGALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (837)
Q Consensus 527 ~~~~~~a~~~L~~l~~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L 605 (837)
++++..|+++|.+++...+.+ ..+++.|+++.|+.++.+.+ +.++..|+++|.+++.. .+.....+.+.|+++.|
T Consensus 258 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~~---~~~~~~~~~~~~~l~~L 333 (528)
T 4b8j_A 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALRTVGNIVTG---DDAQTQCIIDHQALPCL 333 (528)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTS---CHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHcC---CHHHHHHHHHhhhHHHH
Confidence 999999999999999876554 67788899999999999886 89999999999999985 45556667789999999
Q ss_pred HHHcCCC-CHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--ccchhhh
Q 003227 606 VQLTRSP-HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--EANCIAI 681 (837)
Q Consensus 606 ~~lL~~~-~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~--~~~~~~l 681 (837)
+.+|.++ ++.++..|+++|.|++.. ++....+.+.|+++.|+.++.+ +++.++..|+++|.+++.. ++....+
T Consensus 334 ~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l 410 (528)
T 4b8j_A 334 LSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT---AEFDIKKEAAWAISNATSGGSHDQIKYL 410 (528)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999998 999999999999999975 5567788899999999999998 7999999999999999964 6778888
Q ss_pred hccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcc------------cHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHH
Q 003227 682 GREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG------------NALRIVEEGGVPALVHLCSSSGSKMARFMAAL 749 (837)
Q Consensus 682 ~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~------------~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~ 749 (837)
.+.|+++.|+.+|.+++++++..|+.+|.++..... ....+.+.|+++.|..+..+. ++.++..|..
T Consensus 411 ~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~-~~~v~~~a~~ 489 (528)
T 4b8j_A 411 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHD-NNEIYEKAVK 489 (528)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCC-CHHHHHHHHH
Confidence 899999999999999999999999999999986332 355667888999999988765 4889999999
Q ss_pred HHHHhhCCCC
Q 003227 750 ALAYMFDGRM 759 (837)
Q Consensus 750 aL~~l~~~~~ 759 (837)
+|..+.....
T Consensus 490 il~~~~~~e~ 499 (528)
T 4b8j_A 490 ILEAYWMDEE 499 (528)
T ss_dssp HHHHHCC---
T ss_pred HHHHHCCCcc
Confidence 9999876543
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.4e-31 Score=303.57 Aligned_cols=382 Identities=25% Similarity=0.258 Sum_probs=330.4
Q ss_pred CchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHH
Q 003227 370 QGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449 (837)
Q Consensus 370 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 449 (837)
+....+...++++.|+++|++++++++..|+.+|.+++...+.. +..+.+.|+++.|+.+|+++++.++..++
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-------~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAITT 161 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-------HHHHHHCCChHHHHHHHCcCCHHHHHHHH
Confidence 35666677778999999999999999999999999999765433 55788999999999999999999999999
Q ss_pred HHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHh------
Q 003227 450 KAIANLSV-NAKVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK------ 521 (837)
Q Consensus 450 ~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~------ 521 (837)
.+|.+++. +++.+..+++.|+++.|++++++. ...+++.++.+|++++.+++++..+.+.|+++.|+.++..
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 99999997 889999999999999999999875 4678899999999999999999999999988888766532
Q ss_pred ------------------------------hCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCC-CH
Q 003227 522 ------------------------------WSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCK-FE 569 (837)
Q Consensus 522 ------------------------------~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~-~~ 569 (837)
..+.+++++..|+++|++|+.. ++++..+.+.|+++.|+.++.+.+ .+
T Consensus 242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~ 321 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 321 (644)
T ss_dssp HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcH
Confidence 1235677888888888888875 466788889999999999998743 37
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCC-HHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHH
Q 003227 570 GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH-EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVV 648 (837)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ 648 (837)
.++..|+++|.+++.........+..+.+.++++.|+++|.+++ +.+++.|+++|+|++.++.++..+.+.|+++.|+.
T Consensus 322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~ 401 (644)
T 2z6h_A 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 401 (644)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHH
Confidence 99999999999998742222234555777899999999999875 79999999999999999989999999999999999
Q ss_pred HHhhcC-------------------CCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHH
Q 003227 649 LAQSCS-------------------NASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGAL 709 (837)
Q Consensus 649 ll~~~~-------------------~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L 709 (837)
++.+.. ..+..++..|+.+|.+++.++.++..+.+.|+++.|+++|.++++.++..|+++|
T Consensus 402 lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 481 (644)
T 2z6h_A 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 997610 0245678889999999999888999999999999999999999999999999999
Q ss_pred HHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 710 WNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 710 ~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.+++.+++.+..+.+.|+++.|++++.+++ +.++..|+.+|.++..+..
T Consensus 482 ~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 482 CELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHTSHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTTSC
T ss_pred HHHHcCHHHHHHHHHcCChhHHHHHHcCCC-HHHHHHHHHHHHHHhccCc
Confidence 999998888899999999999999999875 8899999999999988765
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.98 E-value=5.1e-30 Score=290.54 Aligned_cols=373 Identities=21% Similarity=0.170 Sum_probs=323.6
Q ss_pred CchhhHHHhhhHHHHHHhhhcC-CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHH
Q 003227 370 QGLDDFWLKQGAGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEA 448 (837)
Q Consensus 370 ~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 448 (837)
+....++..+++|.|+++|.++ +++++..|+++|++++..+.+ ....+++.|+++.|+.+|+++++.++..|
T Consensus 121 ~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-------~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A 193 (530)
T 1wa5_B 121 PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-------QTKVVVDADAVPLFIQLLYTGSVEVKEQA 193 (530)
T ss_dssp CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-------HHHHHHHTTCHHHHHHHHHHCCHHHHHHH
T ss_pred ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-------HHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 3455666777799999999886 899999999999999875433 35678899999999999999999999999
Q ss_pred HHHHHHhccC-hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-cchHHHHhhCCHHHHHHHHHhhCCCC
Q 003227 449 AKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGG 526 (837)
Q Consensus 449 ~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~~~ 526 (837)
+++|++++.+ ++.+..+...|+++.|++++.+.++.++..|+++|++++... .........++++.|+.++. +.+
T Consensus 194 ~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---~~d 270 (530)
T 1wa5_B 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---SMD 270 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---CCC
T ss_pred HHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---CCC
Confidence 9999999984 788999999999999999999999999999999999999765 55556667899999999995 478
Q ss_pred HHHHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 003227 527 DGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (837)
Q Consensus 527 ~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L 605 (837)
+.++..++++|.+++... +....+++.|+++.|+.++.+.+ +.++..|+++|.+++.. .+.....+.+.|+++.|
T Consensus 271 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L 346 (530)
T 1wa5_B 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTG---NDLQTQVVINAGVLPAL 346 (530)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC-hhhHHHHHHHHHHHHcC---CHHHHHHHHHcchHHHH
Confidence 999999999999999854 55677888899999999999775 89999999999999975 34455566778999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--c--cchhh
Q 003227 606 VQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--E--ANCIA 680 (837)
Q Consensus 606 ~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~--~--~~~~~ 680 (837)
+.+|.++++.++..|+++|.+++.. ++....+++.|+++.|+.++.+ +++.++..|+++|.+++.. + +....
T Consensus 347 ~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 423 (530)
T 1wa5_B 347 RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV---AEYKTKKEACWAISNASSGGLQRPDIIRY 423 (530)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHTTTCTHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999999999999999999975 5567778899999999999988 8999999999999999863 4 67778
Q ss_pred hhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcc------------cHHHHHHcCCHHHHHHHHhcCCcHHHHHHHH
Q 003227 681 IGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG------------NALRIVEEGGVPALVHLCSSSGSKMARFMAA 748 (837)
Q Consensus 681 l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~------------~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~ 748 (837)
+.+.|+++.|+.++.++++.++..|+++|.++....+ ....+.+.|+++.|..++.+++ +.++..|.
T Consensus 424 l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~-~~v~~~a~ 502 (530)
T 1wa5_B 424 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN-DKIYEKAY 502 (530)
T ss_dssp HHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHH
Confidence 8899999999999999999999999999999986322 2355778899999999887665 88999999
Q ss_pred HHHHHhhCCCCc
Q 003227 749 LALAYMFDGRMD 760 (837)
Q Consensus 749 ~aL~~l~~~~~~ 760 (837)
.+|.++.....+
T Consensus 503 ~il~~~~~~~~~ 514 (530)
T 1wa5_B 503 KIIETYFGEEED 514 (530)
T ss_dssp HHHHHHSSSCC-
T ss_pred HHHHHHCCcccc
Confidence 999998876543
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=2.5e-30 Score=303.61 Aligned_cols=383 Identities=25% Similarity=0.274 Sum_probs=327.2
Q ss_pred chhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHH
Q 003227 371 GLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAK 450 (837)
Q Consensus 371 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 450 (837)
....+...++|+.|+++|+++++.++..|+.+|.+|+...... +..+.+.|+++.|+.+|++++..++..++.
T Consensus 226 ~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-------~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~ 298 (780)
T 2z6g_A 226 GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAITTD 298 (780)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh-------HHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 4556667778999999999999999999999999999765433 557788999999999999999999999999
Q ss_pred HHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHh-------
Q 003227 451 AIANLSV-NAKVAKAVAEEGGINILAVLARSMN-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK------- 521 (837)
Q Consensus 451 ~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~------- 521 (837)
+|.+++. +++.+..+++.|+++.|++++++.+ ...++.++.+|++|+..+.++..+++.|+++.|+.++..
T Consensus 299 aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~ 378 (780)
T 2z6g_A 299 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 378 (780)
T ss_dssp HHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHH
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHH
Confidence 9999997 7899999999999999999998754 556778899999999988889999888888877765532
Q ss_pred -----------------------------hCCCCHHHHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHHhcC-CCHH
Q 003227 522 -----------------------------WSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSC-KFEG 570 (837)
Q Consensus 522 -----------------------------~~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~-~~~~ 570 (837)
..+.+++++..|+++|++|+..+ +.+..+++.|+++.|+.++.+. +.+.
T Consensus 379 ~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 458 (780)
T 2z6g_A 379 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 458 (780)
T ss_dssp HHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHH
Confidence 13456778888888888888754 5678888899999999999874 3358
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCH-HHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHH
Q 003227 571 VQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE-GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVL 649 (837)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~l 649 (837)
++..|+++|.+|+.........+..+...++++.|+.+|.+++. .+++.|+++|+|++.++.++..+.+.|+++.|+.+
T Consensus 459 v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~l 538 (780)
T 2z6g_A 459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538 (780)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999987422111234566788999999999998764 99999999999999998889999999999999999
Q ss_pred HhhcC-------------------CCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHH
Q 003227 650 AQSCS-------------------NASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALW 710 (837)
Q Consensus 650 l~~~~-------------------~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~ 710 (837)
+.+.. ...++++..|+.+|.+++.++.++..+.+.|++++|+.+|.++++.++..|+.+|.
T Consensus 539 L~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 618 (780)
T 2z6g_A 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 618 (780)
T ss_dssp HHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 97511 01256788899999999998889999999999999999999999999999999999
Q ss_pred HHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcc
Q 003227 711 NLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDE 761 (837)
Q Consensus 711 ~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~ 761 (837)
+++.+++.+..+.+.|+++.|++++.+++ +.+|..|+.+|.++..+.+..
T Consensus 619 ~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~-~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 619 ELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp HHHTSHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTSCTT
T ss_pred HHhcCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCChHh
Confidence 99998889999999999999999998775 889999999999999887643
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=1.7e-30 Score=305.17 Aligned_cols=342 Identities=24% Similarity=0.273 Sum_probs=300.4
Q ss_pred hhHHHHHHhhhcC-CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 003227 379 QGAGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 379 ~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (837)
++++.|+++|.++ +++++..|+.+|.+|+.. +.++..+.+.|+++.|+.+|+++++.++..|+++|.+++.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--------~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--------REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--------chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5689999999754 899999999999997753 3346788899999999999999999999999999999998
Q ss_pred -ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHH
Q 003227 458 -NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (837)
Q Consensus 458 -~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~ 535 (837)
+++.+..+.+.|+++.|++++++++..+++.++.+|.+++. +++++..+.+.|+++.|+.+++. ......+..++.
T Consensus 264 ~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~--~~~~~~~~~a~~ 341 (780)
T 2z6g_A 264 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSR 341 (780)
T ss_dssp HSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred CChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHH
Confidence 46788888899999999999999999999999999999996 56899999999999999999974 455667889999
Q ss_pred HHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHH
Q 003227 536 ALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (837)
Q Consensus 536 ~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 615 (837)
+|++++..+.++..+++.|+++.|+.++.+.+ ..++..++++|.+++..... . ....++++.|+.+++++++.
T Consensus 342 aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~~~~a~~~L~~L~~~~~~----~--~~~~~~i~~Lv~lL~~~d~~ 414 (780)
T 2z6g_A 342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATK----Q--EGMEGLLGTLVQLLGSDDIN 414 (780)
T ss_dssp HHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSC-HHHHHHHHHHHHHHHTTCTT----C--SCCHHHHHHHHHHTTCSCHH
T ss_pred HHHHhhcChHHHHHHHHhchHHHHHHHHcCCc-hHHHHHHHHHHHHHhccchh----h--hhhhhHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999875 88999999999999985321 1 12357899999999999999
Q ss_pred HHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-cc---chhhhhccCChHHH
Q 003227 616 VRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EA---NCIAIGREGGVAPL 690 (837)
Q Consensus 616 ~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~---~~~~l~~~~~i~~L 690 (837)
+++.|+++|.+|+.+ ++++..+.+.|+++.|+.++.+ .+..+.++..|+++|++++.. ++ .+..+...|+++.|
T Consensus 415 vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L 493 (780)
T 2z6g_A 415 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR-AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493 (780)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHH
Confidence 999999999999997 5678899999999999999976 123458999999999999864 33 35678889999999
Q ss_pred HHHhccCC-HHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcC
Q 003227 691 IALARSEA-EDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSS 738 (837)
Q Consensus 691 ~~lL~s~~-~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~ 738 (837)
+++|.+++ +.++..|+++|.|++.++.++..+.+.|+++.|++++.++
T Consensus 494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~ 542 (780)
T 2z6g_A 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 542 (780)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhc
Confidence 99998776 4999999999999999988898999999999999999864
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=1.4e-29 Score=281.58 Aligned_cols=360 Identities=18% Similarity=0.164 Sum_probs=312.6
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHh-CcHHHHHHHHhcC-ChhHHHHHHHHHHHhcc-
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD-GGIRLLLDLAKSW-REGLQSEAAKAIANLSV- 457 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~- 457 (837)
++.+++.+++++++++..|+.+|.++...... +. ...+++. |+++.|+++|+++ ++.+|..|+++|.+++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~-----~~-~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 95 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPN-----PP-IDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG 95 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSS-----CC-HHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-----Cc-HHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999997642211 11 2346666 9999999999998 89999999999999998
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003227 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (837)
+++....+++.|+++.|+++++++++.+++.|+++|++++... +.+..+.+.|+++.|+.++. .+.+..++..++++
T Consensus 96 ~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~v~~~a~~~ 173 (450)
T 2jdq_A 96 NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS--KQNRLTMTRNAVWA 173 (450)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT--SCCCHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 5778888899999999999999999999999999999999864 78888999999999999996 24688999999999
Q ss_pred HHHhhcCC--CchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCH
Q 003227 537 LANLAADD--KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (837)
Q Consensus 537 L~~l~~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 614 (837)
|++++.+. .....++ .++++.|+.++.+.+ +.++..++++|.+++.. .++....+.+.++++.|+.++.++++
T Consensus 174 L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~ 248 (450)
T 2jdq_A 174 LSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSD-TDVLADACWALSYLSDG---PNDKIQAVIDAGVCRRLVELLMHNDY 248 (450)
T ss_dssp HHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCC-HHHHHHHHHHHHHHTSS---SHHHHHHHHHTTTHHHHHHHTTCSCH
T ss_pred HHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCC-HHHHHHHHHHHHHHHCC---CcHHHHHHHHcCcHHHHHHHHCCCch
Confidence 99999753 3333333 789999999999775 89999999999999975 33445566678999999999999999
Q ss_pred HHHHHHHHHHHhhcCCh-hhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-CccchhhhhccCChHHHHH
Q 003227 615 GVRQEAAGALWNLSFDD-RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIA 692 (837)
Q Consensus 615 ~~~~~a~~~L~~Ls~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ 692 (837)
.++..|+++|.+++.+. ...+.+.+.|+++.|+.++.+ +++.++..|+++|.+++. +++....+.+.|+++.|+.
T Consensus 249 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 325 (450)
T 2jdq_A 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALIS 325 (450)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 99999999999999874 446678888999999999987 789999999999999996 4666677888899999999
Q ss_pred HhccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 693 LARSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 693 lL~s~~~~v~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
++.+++++++..|+++|.+++. +++....+++.|+++.|++++.+++ +.++..|+.+|.++...
T Consensus 326 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 326 ILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD-SKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSC-HHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999986 4566677889999999999999874 88999999999999864
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=2e-29 Score=280.47 Aligned_cols=370 Identities=21% Similarity=0.167 Sum_probs=316.6
Q ss_pred chhhHHHh-hhHHHHHHhhhcC-CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHH
Q 003227 371 GLDDFWLK-QGAGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEA 448 (837)
Q Consensus 371 ~~~~~~~~-~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 448 (837)
....++.. +++|.|+++|+++ +++++..|+.+|.+++..+.+ ....+.+.|+++.|+.+|+++++.++..|
T Consensus 55 ~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~i~~L~~lL~~~~~~vr~~a 127 (450)
T 2jdq_A 55 PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-------QTRIVIQAGAVPIFIELLSSEFEDVQEQA 127 (450)
T ss_dssp CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-------HHHHHHhCCCHHHHHHHHcCCCHHHHHHH
Confidence 34455566 6789999999887 899999999999999875433 24567889999999999999999999999
Q ss_pred HHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCc--cchHHHHhhCCHHHHHHHHHhhCC
Q 003227 449 AKAIANLSV-NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSS 524 (837)
Q Consensus 449 ~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~L~~lL~~~~~ 524 (837)
+++|++++. +++.+..+.+.|+++.+++++++ .+..+++.|+++|++++... .....+. .++++.|+.++. +
T Consensus 128 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~---~ 203 (450)
T 2jdq_A 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLF---V 203 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTT---C
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHc---c
Confidence 999999998 46789999999999999999995 78999999999999999653 3333333 789999999995 5
Q ss_pred CCHHHHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH
Q 003227 525 GGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~ 603 (837)
.++.++..++++|.+++... +....+.+.|+++.|+.++.+.+ +.++..|+++|.+++.. .+.....+.+.|+++
T Consensus 204 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~ 279 (450)
T 2jdq_A 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-YKVVSPALRAVGNIVTG---DDIQTQVILNCSALQ 279 (450)
T ss_dssp CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC-HHHHHHHHHHHHHHTTS---CHHHHHHHHTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc-hhHHHHHHHHHHHHhhC---ChHHHHHHHHCccHH
Confidence 78999999999999999854 56677888999999999998765 89999999999999985 334445566789999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc--Cccchhh
Q 003227 604 ALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV--SEANCIA 680 (837)
Q Consensus 604 ~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~--~~~~~~~ 680 (837)
.|+.++.++++.++..|+++|.+++.. ++....+.+.|+++.|+.++.+ +++.++..|+++|.+++. +++....
T Consensus 280 ~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~ 356 (450)
T 2jdq_A 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---AEFRTRKEAAWAITNATSGGSAEQIKY 356 (450)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999975 6667778889999999999998 899999999999999986 4566677
Q ss_pred hhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcc------------cHHHHHHcCCHHHHHHHHhcCCcHHHHHHHH
Q 003227 681 IGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG------------NALRIVEEGGVPALVHLCSSSGSKMARFMAA 748 (837)
Q Consensus 681 l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~------------~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~ 748 (837)
+.+.|+++.|++++.+++++++..|+++|.+++...+ ....+.+.|+++.|..++.+++ +.+++.|.
T Consensus 357 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~-~~v~~~a~ 435 (450)
T 2jdq_A 357 LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHEN-QEIYQKAF 435 (450)
T ss_dssp HHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHH-HHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHH
Confidence 8889999999999999999999999999999986332 2356778899999999887764 78999999
Q ss_pred HHHHHhhCCCC
Q 003227 749 LALAYMFDGRM 759 (837)
Q Consensus 749 ~aL~~l~~~~~ 759 (837)
.+|.++..+..
T Consensus 436 ~~l~~~~~~~~ 446 (450)
T 2jdq_A 436 DLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHCCC-
T ss_pred HHHHHHCCccc
Confidence 99999886543
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.6e-29 Score=264.89 Aligned_cols=269 Identities=26% Similarity=0.285 Sum_probs=236.1
Q ss_pred ChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhc-----------CCHHHHHHHHHHHHhhccCc-cchHHHHh
Q 003227 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-----------MNRLVAEEAAGGLWNLSVGE-EHKGAIAD 508 (837)
Q Consensus 441 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~~l~~~~-~~~~~l~~ 508 (837)
+...+..|+++|.+++.++++|..+++.|+++.|+.+|.. .++.+++.|+++|.||+.++ +++..+..
T Consensus 45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455668999999999999999999999999999999953 24779999999999999865 47777765
Q ss_pred hCC-HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 509 AGG-VKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 509 ~g~-i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
.+| +|.|+.+|+ ++++++++.|+++|+||+.. ++++..+++.|+|+.|+++|....++++++.|+.+|+||+..
T Consensus 125 ~~GaIp~LV~LL~---s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 125 MKGCMRALVAQLK---SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp CHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHC---CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 544 999999995 58899999999999999984 568899999999999999865544589999999999999985
Q ss_pred CCCCCcccchhh-ccchHHHHHHHcCCCCH----HHHHHHHHHHHhhcC----ChhhHHHHHHcCCHHHHHHHHhhcCCC
Q 003227 586 GDSNSNNSAVGQ-EAGALEALVQLTRSPHE----GVRQEAAGALWNLSF----DDRNREAIAAAGGVEALVVLAQSCSNA 656 (837)
Q Consensus 586 ~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~~Ls~----~~~~~~~l~~~g~i~~L~~ll~~~~~~ 656 (837)
.++++..+. ..|+++.|+.+|.++++ ++++.|+++|+||+. ++++++.+.+.|+++.|+.+|.+ +
T Consensus 202 ---~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~---~ 275 (354)
T 3nmw_A 202 ---CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---H 275 (354)
T ss_dssp ---CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC---S
T ss_pred ---ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC---C
Confidence 334555665 78999999999987654 599999999999995 78889999999999999999987 8
Q ss_pred CHHHHHHHHHHHHhccc-CccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCccc
Q 003227 657 SPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGN 718 (837)
Q Consensus 657 ~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 718 (837)
+..+++.|+++|+|++. +++++..+.+.|++++|+++++++++.+++.|+++|.||+.+...
T Consensus 276 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999995 688999999999999999999999999999999999999985443
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=5.8e-29 Score=260.76 Aligned_cols=277 Identities=26% Similarity=0.317 Sum_probs=239.5
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhcCCC-chHHHHh
Q 003227 482 NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW--------SSGGDGVLERAAGALANLAADDK-CSMEVAL 552 (837)
Q Consensus 482 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~--------~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~ 552 (837)
.......|+++|.|++.++++|..+.+.|++++|+.+|... ...++++++.|+++|.||+.+++ ++..+..
T Consensus 45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33456689999999999999999999999999999999521 11246799999999999998665 7777765
Q ss_pred c-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH-cCCCCHHHHHHHHHHHHhhcC-
Q 003227 553 A-GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL-TRSPHEGVRQEAAGALWNLSF- 629 (837)
Q Consensus 553 ~-g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~~Ls~- 629 (837)
. |+|+.|+.+|.+++ ++++..|+++|.||+... ++.++..+.+.|+++.|+++ +++.++++++.|+.+|+||+.
T Consensus 125 ~~GaIp~LV~LL~s~~-~~v~~~A~~aL~nLs~~~--~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 125 MKGCMRALVAQLKSES-EDLQQVIASVLRNLSWRA--DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp CHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTC--CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHhccC--CHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 5 56999999999775 899999999999999741 34678888899999999997 566789999999999999999
Q ss_pred ChhhHHHHH-HcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhccc----CccchhhhhccCChHHHHHHhccCCHHHHH
Q 003227 630 DDRNREAIA-AAGGVEALVVLAQSCSNA-SPGLQERAAGALWGLSV----SEANCIAIGREGGVAPLIALARSEAEDVHE 703 (837)
Q Consensus 630 ~~~~~~~l~-~~g~i~~L~~ll~~~~~~-~~~v~~~A~~~L~~l~~----~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~ 703 (837)
.++++..++ ..|+++.|+.+|.+..+. +.++++.|+++|.|++. +++++..+.+.|++++|+.+|++++..+++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 567888887 689999999999861111 12699999999999995 788999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcch
Q 003227 704 TAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEF 762 (837)
Q Consensus 704 ~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~ 762 (837)
.|+++|+|++. +++++..+++.|+++.|++++.+++ +.+++.|+++|.++..+++..+
T Consensus 282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999995 7888999999999999999999875 8899999999999999988654
No 27
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=6.3e-27 Score=249.04 Aligned_cols=251 Identities=23% Similarity=0.378 Sum_probs=140.7
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccc
Q 003227 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESA 116 (837)
Q Consensus 37 ~~~~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 116 (837)
...|++||+|++.+||+||+..|+.+++.|||+|+.+..++.+|++++++...+.+..+..+.. ++++.|+++++...
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n~l~ 83 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMD 83 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEEC
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhh--ccceEEEcCCcccc
Confidence 4569999999999999999999999999999999999999999999999998888776665532 34555555544332
Q ss_pred hHHHH-HcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH
Q 003227 117 DSIIH-LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGD 195 (837)
Q Consensus 117 ~~~~~-~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~ 195 (837)
..... ..+++|++|++++|. +++..+..+...+++|++|+++ +| .+++.....+.. +++|++|++++|..+++.
T Consensus 84 ~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~--~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 84 QPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLE--GL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEF 158 (336)
T ss_dssp SCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECT--TC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHH
T ss_pred ccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCc--Cc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHH
Confidence 21111 134455555555543 4444444444445555555553 22 344444433333 455555555554444444
Q ss_pred HHHHHHhhCCCccEEEecCCCCCChHH----hhCCC-CCCEeeccCCC-CCCHHHHHHHHhcCCCccEEEeccCC-CCHH
Q 003227 196 AINALAKLCPNLTDIGFLDCLNVDEVA----LGNVL-SVRFLSVAGTS-NMKWGVVSQVWHKLPKLVGLDVSRTD-VGPI 268 (837)
Q Consensus 196 ~~~~l~~~~~~L~~L~l~~~~~~~~~~----l~~l~-~L~~L~ls~~~-~i~~~~l~~~~~~~~~L~~L~l~~~~-i~~~ 268 (837)
++..+...||+|++|++++|..+++.+ +..++ +|++|++++|. .+++..+......+++|++|++++|. +++.
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence 444444444555555555543444322 23444 55555555443 34444444444445555555555544 4443
Q ss_pred HHHHHHhcCcccccccccccccccchh
Q 003227 269 TISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 269 ~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
.+..+ ..+++|++|++++|..+++.+
T Consensus 239 ~~~~l-~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 239 CFQEF-FQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp GGGGG-GGCTTCCEEECTTCTTCCGGG
T ss_pred HHHHH-hCCCCCCEeeCCCCCCCCHHH
Confidence 33322 224455555555554444443
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.7e-25 Score=245.93 Aligned_cols=370 Identities=14% Similarity=0.058 Sum_probs=301.6
Q ss_pred cCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHH
Q 003227 367 SNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQS 446 (837)
Q Consensus 367 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 446 (837)
+..+.++.++.+..++.|.+.+++ ++++..|+.+|+++........ .. + ....+.++++|.+++.+.+.
T Consensus 284 Ci~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~----~s---i--~~La~~~~~~L~~~~~~~~~ 352 (778)
T 3opb_A 284 CIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC----IN---L--KQLSEIFINAISRRIVPKVE 352 (778)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT----CC---H--HHHHHHHHHHTTTCCHHHHH
T ss_pred hCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc----Cc---H--HHHHHHHHHHHhcCCccHHH
Confidence 444567887888889999999975 4789999999999886554321 11 1 11456788888887777799
Q ss_pred HHHHHHHHhccChHHHHHHHHcCC-HHHHHHHHhc-CCHHHHHHHHHHHHhhccCcc-----------------------
Q 003227 447 EAAKAIANLSVNAKVAKAVAEEGG-INILAVLARS-MNRLVAEEAAGGLWNLSVGEE----------------------- 501 (837)
Q Consensus 447 ~a~~~L~~l~~~~~~~~~i~~~g~-i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~----------------------- 501 (837)
.|++.|..++.+++.|+.+++..+ ++.|+++++. .+..+...++.+|.|++...+
T Consensus 353 ~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~ 432 (778)
T 3opb_A 353 MSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAA 432 (778)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC----------------
T ss_pred HHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCccc
Confidence 999999999999999999998877 9999999985 778899999999999987321
Q ss_pred ----------------chHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhc
Q 003227 502 ----------------HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS 565 (837)
Q Consensus 502 ----------------~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~ 565 (837)
++..+.+.|+++.|+.++. +.++.+++.|+++|.+++.++++|..++++|+++.|+.++.+
T Consensus 433 ~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~---S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s 509 (778)
T 3opb_A 433 DKVGAEKAAKEDILLFNEKYILRTELISFLKREMH---NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLAN 509 (778)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGG---GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTC
T ss_pred CcccccccchHHHHHHHHHHHHHCcCHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 3566788899999999995 488999999999999999999999999999999999999998
Q ss_pred CCCH--HHHHHHHHHHHHHhcCCCCCCcccchh---hccchHHHHHHHcCC-CCH-------------HHHHHHHHHHHh
Q 003227 566 CKFE--GVQEQAARALANLAAHGDSNSNNSAVG---QEAGALEALVQLTRS-PHE-------------GVRQEAAGALWN 626 (837)
Q Consensus 566 ~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~i~~L~~lL~~-~~~-------------~~~~~a~~~L~~ 626 (837)
.+.. ..+..|+.+|.++.... ++. ..+ ...+++++|+.+|.. +.. --+..|+.+|.|
T Consensus 510 ~~~~~~~~k~~AA~ALArLlis~--np~--~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN 585 (778)
T 3opb_A 510 KQDIGEPIRILGCRALTRMLIFT--NPG--LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN 585 (778)
T ss_dssp C---CCHHHHHHHHHHHHHHHTS--CHH--HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHhcC--CHH--HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence 7533 27899999999998642 111 111 113899999999983 211 127789999999
Q ss_pred hcCCh-----hhHHHHHHc-CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccch-hhhhccC------ChHHHHHH
Q 003227 627 LSFDD-----RNREAIAAA-GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANC-IAIGREG------GVAPLIAL 693 (837)
Q Consensus 627 Ls~~~-----~~~~~l~~~-g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~-~~l~~~~------~i~~L~~l 693 (837)
|+..+ +.+..++.. |+++.|..++.+ ++..+|.+|+++++|++.+++.. ..+...+ .++.|+.+
T Consensus 586 LAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s---~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~L 662 (778)
T 3opb_A 586 LASSETSDGEEVCKHIVSTKVYWSTIENLMLD---ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKL 662 (778)
T ss_dssp HHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHG
T ss_pred HhcCCcccchHHHHHHHHhcCHHHHHHHHHhC---CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHH
Confidence 99986 347778885 999999999987 89999999999999999988764 3454322 37889999
Q ss_pred hccCCHHHHHHHHHHHHHHc-CCcccHHHHHHc-CCHHHHHHHHhcC-CcHHHHHHHHHHHHHhhCC
Q 003227 694 ARSEAEDVHETAAGALWNLA-FNPGNALRIVEE-GGVPALVHLCSSS-GSKMARFMAALALAYMFDG 757 (837)
Q Consensus 694 L~s~~~~v~~~a~~~L~~l~-~~~~~~~~i~~~-~~i~~L~~ll~~~-~~~~~~~~a~~aL~~l~~~ 757 (837)
+++++.++|.+|+++|.+++ .++.....+++. ++++.+++++++. +++.++..++.++.|+..-
T Consensus 663 l~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 663 LQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999996 578888888886 7999999999982 3588999999999999863
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=1.1e-23 Score=213.96 Aligned_cols=238 Identities=38% Similarity=0.457 Sum_probs=219.3
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHH
Q 003227 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGA 505 (837)
Q Consensus 428 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 505 (837)
|+++.|+++|++++++++..|+++|.+++. +++.+..+.+.|+++.|+++++++++.++..|+++|++++.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 678999999999999999999999999998 556999999999999999999999999999999999999987 789999
Q ss_pred HHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 506 l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
+.+.|+++.|+.++. +++++++..|+++|++++. +++.+..+.+.|+++.|++++.+.+ +.++..++++|.+++.
T Consensus 82 ~~~~~~i~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIAS 157 (252)
T ss_dssp HHHTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHc
Confidence 999999999999995 4789999999999999995 6788899999999999999999876 8999999999999998
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHH
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQER 663 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~ 663 (837)
. .+.....+.+.|+++.|+.++.++++.++..|+++|.+++.. +..+..+.+.|+++.|+.++.+ +++.+++.
T Consensus 158 ~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~ 231 (252)
T 4hxt_A 158 G---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKE 231 (252)
T ss_dssp S---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHH
T ss_pred C---CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHH
Confidence 5 455556778899999999999999999999999999999985 6668889999999999999987 89999999
Q ss_pred HHHHHHhcccCc
Q 003227 664 AAGALWGLSVSE 675 (837)
Q Consensus 664 A~~~L~~l~~~~ 675 (837)
|+++|.+++...
T Consensus 232 a~~~L~~l~~~~ 243 (252)
T 4hxt_A 232 AQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998653
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=1.5e-23 Score=213.02 Aligned_cols=239 Identities=36% Similarity=0.445 Sum_probs=218.1
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 458 (837)
++++.|+++|++++++++..|+.+|.+++..+.+ .+..+.+.|+++.|+++|+++++.++..|+++|.+++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~-------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPAS-------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH-------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999998865543 467889999999999999999999999999999999995
Q ss_pred -hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc-cCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003227 459 -AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (837)
Q Consensus 459 -~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (837)
++.+..+.+.|+++.++.+++++++.++..|+++|++++ .+++++..+.+.|+++.|+.++. +.++.++..++++
T Consensus 75 ~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 75 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARA 151 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999 56789999999999999999995 5789999999999
Q ss_pred HHHhhcCC-CchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHH
Q 003227 537 LANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (837)
Q Consensus 537 L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 615 (837)
|++++... ..+..+.+.|+++.|+.++.+.+ +.++..|+++|.+++.. .+.....+.+.|+++.|+.++.+++++
T Consensus 152 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASG---PTSAIKAIVDAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTS---BHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred HHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHCCCcHH
Confidence 99999854 55578889999999999999765 89999999999999975 566677888899999999999999999
Q ss_pred HHHHHHHHHHhhcCCh
Q 003227 616 VRQEAAGALWNLSFDD 631 (837)
Q Consensus 616 ~~~~a~~~L~~Ls~~~ 631 (837)
+++.|+++|.|++...
T Consensus 228 v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 228 VQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999998764
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=2e-23 Score=211.98 Aligned_cols=236 Identities=31% Similarity=0.348 Sum_probs=215.3
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHH
Q 003227 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGA 505 (837)
Q Consensus 428 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 505 (837)
...+.++..|.++++++|..|+++|.++.. +++.+..+.+.|+++.|+++|+++++.++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 346789999999999999999999977555 77888999999999999999999999999999999999997 6789999
Q ss_pred HHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch-HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 506 l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
+.+.|+++.|+.++. ++++.++..|+++|++++.+++.+ ..+.+.|+++.|+.++.+++ +.++..|+++|.+++.
T Consensus 92 i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 92 VIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIAS 167 (252)
T ss_dssp HHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHc
Confidence 999999999999996 478999999999999999998888 88999999999999999875 8999999999999998
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHH
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQER 663 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~ 663 (837)
. .+.....+.+.|+++.|+.++.++++.++..|+++|.+++.. ++.+..+.+.|+++.|+.++.+ +++.++..
T Consensus 168 ~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~ 241 (252)
T 4db8_A 168 G---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH---ENEKIQKE 241 (252)
T ss_dssp S---CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC---SSSHHHHT
T ss_pred C---ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC---CCHHHHHH
Confidence 5 455666777899999999999999999999999999999965 6678889999999999999987 88999999
Q ss_pred HHHHHHhccc
Q 003227 664 AAGALWGLSV 673 (837)
Q Consensus 664 A~~~L~~l~~ 673 (837)
|+++|.+++.
T Consensus 242 A~~~L~~l~~ 251 (252)
T 4db8_A 242 AQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=1.7e-23 Score=212.45 Aligned_cols=236 Identities=30% Similarity=0.343 Sum_probs=213.6
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (837)
.+.+.++|++++++++..|+.+|.++...+ +..+..+.+.|+++.|+++|+++++.++..|+++|.+++. ++
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-------~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-------CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 588999999999999999999998766542 3446789999999999999999999999999999999998 78
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccch-HHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK-GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
+.+..+.+.|+++.|+++++++++.+++.|+++|++++.+++.+ ..+.+.|+++.|+.++. ++++.++..|+++|+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALS 163 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988887 89999999999999995 478999999999999
Q ss_pred HhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 539 NLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 539 ~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
+++.. ++.+..+.+.|+++.|+.++.+++ +.++..|+++|.+++.. ++..+..+.+.|+++.|+.++.+++++++
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 239 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG---GNEQKQAVKEAGALEKLEQLQSHENEKIQ 239 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHTTTTCSSSHHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHhcC---CHHHHHHHHHCCcHHHHHHHhCCCCHHHH
Confidence 99985 466678888999999999999874 99999999999999965 56667778899999999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 003227 618 QEAAGALWNLSFD 630 (837)
Q Consensus 618 ~~a~~~L~~Ls~~ 630 (837)
+.|+++|.||+.+
T Consensus 240 ~~A~~~L~~l~~~ 252 (252)
T 4db8_A 240 KEAQEALEKLQSH 252 (252)
T ss_dssp HTHHHHHHTTC--
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999853
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3e-21 Score=214.76 Aligned_cols=387 Identities=13% Similarity=0.045 Sum_probs=284.6
Q ss_pred HHHHHHhCcHHHHHHHHhcC-ChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q 003227 421 AEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG 499 (837)
Q Consensus 421 ~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~ 499 (837)
...+...|..+.+.+.+.+. +..+...+++.|...+.+..+|..|. ...++.|.+++++ ..++..|+.+|..+...
T Consensus 248 s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~-~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~ 324 (778)
T 3opb_A 248 SEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYIT-ENYLQLLERSLNV--EDVQIYSALVLVKTWSF 324 (778)
T ss_dssp HHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHH-HHHHHHHHHHTTS--GGGHHHHHHHHHHHTGG
T ss_pred HHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHH-HhHHHHHHHHhcc--HHHHHHHHHHHHHHhcC
Confidence 34556788889999888664 55666677777777777888877774 4577899988865 47888999999998865
Q ss_pred ccch-HHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhc-CcHHHHHHHHhcCCCHHHHHHHHH
Q 003227 500 EEHK-GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALA-GGVHALVMLARSCKFEGVQEQAAR 577 (837)
Q Consensus 500 ~~~~-~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~ll~~~~~~~~~~~a~~ 577 (837)
+... ..+.+ ..+.+.+.+. ..+.+-++.|+..|.+++.+++.|+.+++. |+++.|+.++....+..+...++.
T Consensus 325 ~~~~~~si~~--La~~~~~~L~---~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~ 399 (778)
T 3opb_A 325 TKLTCINLKQ--LSEIFINAIS---RRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLV 399 (778)
T ss_dssp GTCTTCCHHH--HHHHHHHHTT---TCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHH
T ss_pred CCCCcCcHHH--HHHHHHHHHh---cCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 4221 11111 2344445553 345556999999999999999999999987 669999999997555788999999
Q ss_pred HHHHHhcCCCCCCc-----------------------------------ccchhhccchHHHHHHHcCCCCHHHHHHHHH
Q 003227 578 ALANLAAHGDSNSN-----------------------------------NSAVGQEAGALEALVQLTRSPHEGVRQEAAG 622 (837)
Q Consensus 578 ~L~~l~~~~~~~~~-----------------------------------~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 622 (837)
+|.|++...+.... ++..+.+.|+++.|+.++++.++.+++.|++
T Consensus 400 IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~ 479 (778)
T 3opb_A 400 IMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVR 479 (778)
T ss_dssp HHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHH
T ss_pred HHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 99999986542111 4567788999999999999999999999999
Q ss_pred HHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhc---cCChHHHHHHhcc--C
Q 003227 623 ALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR---EGGVAPLIALARS--E 697 (837)
Q Consensus 623 ~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~---~~~i~~L~~lL~s--~ 697 (837)
+|.||+.++++|..+++.|+++.|++++.+........+..|+.+|++++.+.+....+.. .|++++|+.+|.. +
T Consensus 480 aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~ 559 (778)
T 3opb_A 480 IIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTP 559 (778)
T ss_dssp HHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSS
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCC
Confidence 9999999999999999999999999999871111123899999999999865433333321 3899999999972 2
Q ss_pred CH------------HHHHHHHHHHHHHcCCcc-----cHHHHHHc-CCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 698 AE------------DVHETAAGALWNLAFNPG-----NALRIVEE-GGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 698 ~~------------~v~~~a~~~L~~l~~~~~-----~~~~i~~~-~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.. --+..|+.||.||+..++ .+..++++ |+++.|.+++.+++ +.+|..|+++++|+..+..
T Consensus 560 ~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n-~~VrrAA~elI~NL~~~~e 638 (778)
T 3opb_A 560 VDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDEN-VPLQRSTLELISNMMSHPL 638 (778)
T ss_dssp CSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHTSGG
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCC-HHHHHHHHHHHHHHhCCcH
Confidence 11 227789999999999763 37888885 99999999999865 8999999999999997533
Q ss_pred cchhhhccCccCcccccchhHHHHHHHHHHHHHHHhcCChhHHHHHHhccchhhhHHHHHHhhhccC
Q 003227 760 DEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEA 826 (837)
Q Consensus 760 ~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 826 (837)
.. ........ ..++. .-++.+.++ +.+.|+++|.+|+++.|...-....-.+.+++.
T Consensus 639 ~i---~~k~~~~~----~~~~~--~rL~lLV~L-l~s~D~~~r~AAagALAnLts~~~~ia~~ll~~ 695 (778)
T 3opb_A 639 TI---AAKFFNLE----NPQSL--RNFNILVKL-LQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695 (778)
T ss_dssp GT---GGGTSCCS----SHHHH--HHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred HH---HHHHHhhc----Cchhh--ccHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence 20 01111111 11111 236777787 788899999888777766543333334445554
No 34
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=1.2e-22 Score=234.02 Aligned_cols=174 Identities=18% Similarity=0.305 Sum_probs=100.7
Q ss_pred CCCCCCCCHHHHHHHHccCC-hHhHHHHHhhcHHHHHHhcCCCcccccCCCCCcC-------------------------
Q 003227 37 VVDWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGASPCLWSSLDLRAHKC------------------------- 90 (837)
Q Consensus 37 ~~~~~~LP~eil~~I~~~l~-~~d~~~~~~v~~~w~~~~~~~~~~~~l~l~~~~~------------------------- 90 (837)
.+.|+.||+|++.+||+||+ .+|+.+++.|||+|+.+. ...|.++++.++..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 80 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE--RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFA 80 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH--HHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh--hhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchh
Confidence 46799999999999999999 999999999999999882 22344444433211
Q ss_pred ------------CHHHHHHHHHhCCCcceeeecCcccchHHHHH---cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCe
Q 003227 91 ------------DIAMAASLASRCMNLQKLRFRGAESADSIIHL---QARNLRELSGDYCRKITDATLSVIVARHEALES 155 (837)
Q Consensus 91 ------------~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~ 155 (837)
....+..+...+++|++|++++|...+..+.. .+++|++|++.+|..+++.++..+...|++|++
T Consensus 81 ~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 160 (594)
T 2p1m_B 81 DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160 (594)
T ss_dssp GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCE
T ss_pred hcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCE
Confidence 12234445555666666666666554432211 456666666666655666666666656666666
Q ss_pred EEeCCCCCCCCCHHH---HHHHHhcCCCCCEEEecCCC-CCCHHHHHHHHhhCCCccEEEecCC
Q 003227 156 LQLGPDFCERITSDA---VKAIALCCPKLKKLRLSGIR-DICGDAINALAKLCPNLTDIGFLDC 215 (837)
Q Consensus 156 L~l~~~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~L~~L~l~~~ 215 (837)
|+++ +|. +++.+ +..+...+++|++|++++|. .+++..+..+...||+|++|++++|
T Consensus 161 L~L~--~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 161 LDLR--ESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EECT--TCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred EeCc--CCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 6664 232 22211 22233345555555555553 3566666666666677777777666
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=5e-22 Score=192.72 Aligned_cols=198 Identities=21% Similarity=0.215 Sum_probs=173.3
Q ss_pred hHHHHHHhhhcCCH--HHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 003227 380 GAGLLLSLMQSTQE--DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 380 ~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (837)
.+|.++++|+++++ +++..|+.+|.+++..++++ +..+++.|+||.|+++|+++++++|..|+++|.+++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~-------r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEA-------RKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 47999999988887 89999999999988765544 6789999999999999999999999999999999998
Q ss_pred -ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh-------------
Q 003227 458 -NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW------------- 522 (837)
Q Consensus 458 -~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~------------- 522 (837)
+++++..|++.|||+.|+++|++ ++.++++.|+.+||+|+..++++..+.+. ++++|++++..+
T Consensus 82 ~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred CCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 68999999999999999999984 79999999999999999999999999875 799998865311
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCCchHHHHhc-CcHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcC
Q 003227 523 SSGGDGVLERAAGALANLAA-DDKCSMEVALA-GGVHALVMLARSC-----KFEGVQEQAARALANLAAH 585 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~-g~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~ 585 (837)
...+++++++|.++|+||+. +++.|..|++. |+|+.|+.+++.+ .+...++.|+.+|+||+..
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 12367999999999999998 56899999987 6789999999853 2467889999999999974
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=189.57 Aligned_cols=196 Identities=20% Similarity=0.234 Sum_probs=172.5
Q ss_pred cHHHHHHHHhcCCh--hHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchH
Q 003227 429 GIRLLLDLAKSWRE--GLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKG 504 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~ 504 (837)
.+|.+|++|+++++ ++|..|+++|.+++. +++++..+++.|+||.|+++|+++++.+++.|+++|.||+. +++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 47899999999888 899999999999997 88999999999999999999999999999999999999997 579999
Q ss_pred HHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHh---c------------CCCH
Q 003227 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR---S------------CKFE 569 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~---~------------~~~~ 569 (837)
.+.+.|++|+|+++|+. +.+.++++.|+++|+||+..++++..+++ ++++.|+.++. + ..++
T Consensus 89 ~I~~~GaI~~Lv~lL~~--~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQ--TRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHcCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999973 46889999999999999999999999887 47999988652 1 1257
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccchhhc-cchHHHHHHHcCC------CCHHHHHHHHHHHHhhcCC
Q 003227 570 GVQEQAARALANLAAHGDSNSNNSAVGQE-AGALEALVQLTRS------PHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~~~i~~L~~lL~~------~~~~~~~~a~~~L~~Ls~~ 630 (837)
++++.|+++|+|++.. .++.+..+.+ .|+|+.|+.+++. .+...++.|+.+|+||+..
T Consensus 166 ~v~~na~~~L~nLss~---~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSA---GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTS---CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999985 4467777775 4778999999865 2567899999999999975
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.85 E-value=3.7e-20 Score=181.98 Aligned_cols=200 Identities=30% Similarity=0.343 Sum_probs=179.3
Q ss_pred HHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-Ccc
Q 003227 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEE 501 (837)
Q Consensus 424 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~ 501 (837)
....+..+.|+.+|+++++.++..|+++|.+++. +++.+..+.+.|+++.|+++|+++++.+++.|+++|++++. +++
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 3456889999999999999999999999999995 78899999999999999999999999999999999999995 568
Q ss_pred chHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003227 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (837)
Q Consensus 502 ~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 580 (837)
.+..+.+.|+++.|+.+|. +.++.++..|+++|+|++.+ ++.+..+.+.|+++.|+.++.+++ +.++..|+++|.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~ 163 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALS 163 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc---CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 8999999999999999995 47899999999999999974 455678889999999999999875 899999999999
Q ss_pred HHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Q 003227 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
+++.. .+..+..+.+.|+++.|++++.++++++++.|+++|.+|+.+
T Consensus 164 ~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 164 NIASG---GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHTS---CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHcC---CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 99985 466778888999999999999999999999999999999863
No 38
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.5e-20 Score=216.41 Aligned_cols=261 Identities=19% Similarity=0.234 Sum_probs=170.3
Q ss_pred CCCCHHHHHHHHccC-ChHhHHHHHhhcHHHHHHhcCCC---------------------cccccCCCC-----------
Q 003227 41 TSLPDDTVIQLMSCL-NYRDRASLSSTCRTWRALGASPC---------------------LWSSLDLRA----------- 87 (837)
Q Consensus 41 ~~LP~eil~~I~~~l-~~~d~~~~~~v~~~w~~~~~~~~---------------------~~~~l~l~~----------- 87 (837)
..||+|++.+||+|| +.+|+.+++.|||+|+.+..... ..++++++.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 589999999999999 89999999999999998731100 012222311
Q ss_pred ---CcCCHHHHHHHHHhCCCcceeeecCcccchHHHHH---cCCC-ccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCC
Q 003227 88 ---HKCDIAMAASLASRCMNLQKLRFRGAESADSIIHL---QARN-LRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (837)
Q Consensus 88 ---~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~---~~~~-L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~ 160 (837)
.......+..+...|++|++|+|++|...+..+.. .+++ |++|++++|..+++.++..+...|++|++|+++
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~- 172 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME- 172 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECT-
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECc-
Confidence 11233455566667777777777777655443222 2444 777777777666777777777777777777774
Q ss_pred CCCCCCCHHH---HHHHHhcCCCCCEEEecCCCC--CCHHHHHHHHhhCCCccEEEecCCCCCC----------------
Q 003227 161 DFCERITSDA---VKAIALCCPKLKKLRLSGIRD--ICGDAINALAKLCPNLTDIGFLDCLNVD---------------- 219 (837)
Q Consensus 161 ~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~--i~~~~~~~l~~~~~~L~~L~l~~~~~~~---------------- 219 (837)
+| .+++.+ +..+...+++|++|+++++.. +++..+..+...||+|++|++++|...+
T Consensus 173 -~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 173 -ES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250 (592)
T ss_dssp -TC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEE
T ss_pred -cc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcc
Confidence 34 332222 445556677777777766521 3466777777778888888887763111
Q ss_pred -------------------------------h----HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCC
Q 003227 220 -------------------------------E----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD 264 (837)
Q Consensus 220 -------------------------------~----~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~ 264 (837)
+ ..+..+++|++|++++|. +++..+..+...+++|+.|+++ +.
T Consensus 251 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~ 328 (592)
T 3ogk_B 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NV 328 (592)
T ss_dssp CBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GG
T ss_pred cccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-Cc
Confidence 0 012345677777777775 7777776666777778887777 55
Q ss_pred CCHHHHHHHHhcCcccccccccc----------cccccchhHHHHHHhhhhh
Q 003227 265 VGPITISRLLTSSKSLKVLCALN----------CPVLEEENNISAVKSKGKL 306 (837)
Q Consensus 265 i~~~~l~~l~~~~~~L~~l~l~~----------c~~i~~~~~~~~~~~~~~l 306 (837)
+++.++..+...|++|++|++.+ |..+++.++..+...++.|
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 67777777777777788888874 7777777766655444443
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.84 E-value=5.5e-20 Score=180.72 Aligned_cols=197 Identities=27% Similarity=0.340 Sum_probs=177.6
Q ss_pred HhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhc
Q 003227 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (837)
Q Consensus 377 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (837)
..++.+.|+.+|++++++++..|+++|.+++..+++ .+..+.+.|+++.|+++|+++++.++..|+++|++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~-------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNE-------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH-------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 445579999999999999999999999999865443 4678999999999999999999999999999999999
Q ss_pred c-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHH
Q 003227 457 V-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (837)
Q Consensus 457 ~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (837)
. +++.+..+.+.|+++.|+++|+++++.+++.|+++|++++.. ++.+..+.+.|+++.|++++. ++++.++..|+
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~ 159 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEAL 159 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc---CCCHHHHHHHH
Confidence 6 788999999999999999999999999999999999999964 567788899999999999995 47899999999
Q ss_pred HHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 535 GALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 535 ~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
++|++++.. ++.+..+.+.|+++.|++++.+.+ +.+++.|+++|.+++.
T Consensus 160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence 999999996 677888999999999999999765 9999999999999975
No 40
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.81 E-value=1.7e-18 Score=176.27 Aligned_cols=226 Identities=19% Similarity=0.153 Sum_probs=184.3
Q ss_pred ChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHH-HHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHH
Q 003227 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDL 518 (837)
Q Consensus 441 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~l 518 (837)
+.+.+..|+..|.+++.+.++...+.+.|+++.++. +|+++++.+++.|+++|++++.+ +..+..+++.|++++|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 346788899999999999999999999999999999 99999999999999999999975 5789999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 003227 519 IFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (837)
Q Consensus 519 L~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 597 (837)
|.. +.++.+++.|+++|++++.+. .....+.+.|+++.|+.++.+++ ..++..|+++|.+++.. .++.+..+.
T Consensus 133 L~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d-~~v~~~A~~aLs~L~~~---~~~~~~~vv 206 (296)
T 1xqr_A 133 LDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVG---HPEHKGTLC 206 (296)
T ss_dssp HHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHH---CGGGHHHHH
T ss_pred Hcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhC---ChHHHHHHH
Confidence 973 347899999999999999854 55678888999999999999875 99999999999999986 567788889
Q ss_pred ccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhh-HHHHHHc-CCHHHH----HHHHhhcCCCCHHHHHHHHHHHHhc
Q 003227 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIAAA-GGVEAL----VVLAQSCSNASPGLQERAAGALWGL 671 (837)
Q Consensus 598 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~-g~i~~L----~~ll~~~~~~~~~v~~~A~~~L~~l 671 (837)
+.|+++.|+.+|.++++.+++.|+.+|.+++...+. ....... ..+..+ ++-++. ++...++.+.|..++.++
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~-~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ-HEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987332 2222211 112222 222221 122456666777777665
Q ss_pred cc
Q 003227 672 SV 673 (837)
Q Consensus 672 ~~ 673 (837)
..
T Consensus 286 f~ 287 (296)
T 1xqr_A 286 FS 287 (296)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.79 E-value=1.8e-18 Score=176.11 Aligned_cols=224 Identities=22% Similarity=0.204 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 003227 527 DGVLERAAGALANLAADDKCSMEVALAGGVHALVM-LARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (837)
Q Consensus 527 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~-ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L 605 (837)
.+-+..|+..|.+++.+.++...+.+.|+++.|+. +|.+++ +.++..|+++|.+++.. ++..+..+.+.|+++.|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~~Lg~ia~~---n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQN---VAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhC---CHHHHHHHHHCCCHHHH
Confidence 45778899999999998889999999999999999 998775 99999999999999986 66778888899999999
Q ss_pred HHHcCC-CCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhh
Q 003227 606 VQLTRS-PHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIG 682 (837)
Q Consensus 606 ~~lL~~-~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~ 682 (837)
+.+|++ +++.+++.|+++|.|++.+ ++..+.+.+.|+++.|+.+|.+ ++..++..|+++|.+++.. ++.+..++
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~---~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ---QVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999985 4889999999999999986 5667788899999999999997 8999999999999999874 77888999
Q ss_pred ccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcC--CHHHH----HHHHhcCC-cHHHHHHHHHHHHHhh
Q 003227 683 REGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEG--GVPAL----VHLCSSSG-SKMARFMAALALAYMF 755 (837)
Q Consensus 683 ~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~--~i~~L----~~ll~~~~-~~~~~~~a~~aL~~l~ 755 (837)
+.|++++|+.+|.++++.+++.|+.+|.++.............+ .+..+ ++-++... ...+.+.|...+..+.
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987632222222221 12222 23333222 3566777777777776
Q ss_pred CC
Q 003227 756 DG 757 (837)
Q Consensus 756 ~~ 757 (837)
.+
T Consensus 287 ~~ 288 (296)
T 1xqr_A 287 SS 288 (296)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 42
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1e-16 Score=184.59 Aligned_cols=220 Identities=18% Similarity=0.206 Sum_probs=161.6
Q ss_pred ccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHH--HHcCCCccEEec--------CCCCCCCHHHHHHHHhc
Q 003227 80 WSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSG--------DYCRKITDATLSVIVAR 149 (837)
Q Consensus 80 ~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l--------~~c~~~~~~~l~~~~~~ 149 (837)
.++++++.+.+++..+..+...|++|++|++++|....... ...+++|++|++ ..|..+++.++..+...
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~ 370 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh
Confidence 35666666667777777777778888888888772222221 225788888888 44566788888887777
Q ss_pred CCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEec-----CCCCCC----HHHHHHHHhhCCCccEEEecCCCCCCh
Q 003227 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLS-----GIRDIC----GDAINALAKLCPNLTDIGFLDCLNVDE 220 (837)
Q Consensus 150 ~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~-----~~~~i~----~~~~~~l~~~~~~L~~L~l~~~~~~~~ 220 (837)
|++|++|.++ |+.+++.++..++..||+|++|+++ +|..++ +.++..+...|++|++|++++ .+++
T Consensus 371 ~~~L~~L~~~---~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~ 445 (594)
T 2p1m_B 371 CPKLESVLYF---CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD 445 (594)
T ss_dssp CTTCCEEEEE---ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH
T ss_pred chhHHHHHHh---cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccH
Confidence 8888888663 7778888887777778888888887 566777 777777777888888888866 5677
Q ss_pred HHh---h-CCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchhH
Q 003227 221 VAL---G-NVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN 296 (837)
Q Consensus 221 ~~l---~-~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~~ 296 (837)
.++ . .+++|++|++++|. +++.++..+...+++|+.|++++|.+++.++..+...+++|+.|++++|+ +++.++
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~ 523 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS-VSFGAC 523 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC-CBHHHH
T ss_pred HHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC-CCHHHH
Confidence 554 2 37788888888764 77888777777788888888888888888877777778888888888887 577776
Q ss_pred HHHHHhhhhh
Q 003227 297 ISAVKSKGKL 306 (837)
Q Consensus 297 ~~~~~~~~~l 306 (837)
..+....+.+
T Consensus 524 ~~l~~~lp~l 533 (594)
T 2p1m_B 524 KLLGQKMPKL 533 (594)
T ss_dssp HHHHHHCTTE
T ss_pred HHHHHhCCCC
Confidence 6655555554
No 43
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=7.3e-17 Score=171.12 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=107.3
Q ss_pred CCCcceeeecCcccchH-HHH--HcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC
Q 003227 102 CMNLQKLRFRGAESADS-IIH--LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~-~~~--~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~ 178 (837)
+++|++|++++|...+. ... ..+++|++|++++|. +++.....+.. +++|++|+++ +|..+++.++..+...+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~-~~~L~~L~L~--~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVRLNLS--GCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTT-CTTCSEEECT--TCBSCCHHHHHHHHHHC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhc-CCCCCEEECC--CCCCCCHHHHHHHHhcC
Confidence 45566666666654433 211 145666666666654 55544444333 5666666663 34455555555555556
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCC-CccEEEecCCC-CCChHH----hhCCCCCCEeeccCCCCCCHHHHHHHHhcC
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCP-NLTDIGFLDCL-NVDEVA----LGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~-~L~~L~l~~~~-~~~~~~----l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~ 252 (837)
++|++|++++|..+++.++..+...+| +|++|++++|. .+++.. +..+++|++|++++|..+++..+..+ ..+
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l 246 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQL 246 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGC
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCC
Confidence 666666666665566555555555556 66666666654 344432 24556666666666554555544433 335
Q ss_pred CCccEEEeccC-CCCHHHHHHHHhcCcccccccccccccccchhHHHHHHhhhhhhh
Q 003227 253 PKLVGLDVSRT-DVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLL 308 (837)
Q Consensus 253 ~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~~~~~~~~~~~l~l 308 (837)
++|++|++++| .+++.++..+. .+++|+.|++++| +++.++..+...++.+.+
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI 300 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTSEE
T ss_pred CCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHHHHHHHHhhCcceEE
Confidence 66666666665 45555443332 3566666666666 555555544444444443
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=7.9e-17 Score=185.29 Aligned_cols=221 Identities=16% Similarity=0.164 Sum_probs=128.3
Q ss_pred cccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHH--HHcCCCccEEecCC----------CCCCCHHHHHHHHh
Q 003227 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDY----------CRKITDATLSVIVA 148 (837)
Q Consensus 81 ~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~----------c~~~~~~~l~~~~~ 148 (837)
++++++.+.+++..+..+...|++|++|+++++....... ...|++|++|++++ |..+++.++..+..
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 4445555445555555555666666666666332222211 12466666666664 55566666666666
Q ss_pred cCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecC---CCCCCH----HHHHHHHhhCCCccEEEecCCC-CCCh
Q 003227 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSG---IRDICG----DAINALAKLCPNLTDIGFLDCL-NVDE 220 (837)
Q Consensus 149 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~---~~~i~~----~~~~~l~~~~~~L~~L~l~~~~-~~~~ 220 (837)
.|++|++|+++ |+.+++.++..++..|++|++|++++ |..+++ +++..+...|++|++|++++|. .+++
T Consensus 376 ~~~~L~~L~l~---~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 376 GCQELEYMAVY---VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HCTTCSEEEEE---ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred hCccCeEEEee---cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 66666666663 55666666666666666666666652 334553 4555556666666666665543 2455
Q ss_pred HHh----hCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchhH
Q 003227 221 VAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN 296 (837)
Q Consensus 221 ~~l----~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~~ 296 (837)
.++ ..+++|++|++++| .+++.++..+..+|++|++|++++|.+++.++..+...+++|+.|++++|. +|+.++
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~ 530 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQ 530 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCT
T ss_pred HHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHH
Confidence 433 24566666666654 366666666666666666666666666666666665566666666666666 666664
Q ss_pred HHHHHhhhhh
Q 003227 297 ISAVKSKGKL 306 (837)
Q Consensus 297 ~~~~~~~~~l 306 (837)
..+...++.+
T Consensus 531 ~~l~~~~p~l 540 (592)
T 3ogk_B 531 DLMQMARPYW 540 (592)
T ss_dssp TGGGGCCTTE
T ss_pred HHHHHhCCCc
Confidence 4443333333
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.61 E-value=7.8e-14 Score=143.33 Aligned_cols=260 Identities=15% Similarity=0.053 Sum_probs=202.8
Q ss_pred HHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccc
Q 003227 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH 502 (837)
Q Consensus 423 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 502 (837)
.+.+.+.++.|+..|+++++.+|..|+++|+++... +.++.|+++++++++.++..|+.+|..+...+..
T Consensus 18 ~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ----------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH----------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCc----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 456678999999999999999999999999998732 2578899999999999999999999998754322
Q ss_pred hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003227 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (837)
Q Consensus 503 ~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (837)
... .++.|...+. .+.++.++..++++|+++... +... ...++.|+..+.+++ +.++..|+.+|.+
T Consensus 88 ~~~-----l~~~L~~~~~--~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~-~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 88 EDN-----VFNILNNMAL--NDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKS-TNVRRATAFAISV 154 (280)
T ss_dssp HHH-----HHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSC-HHHHHHHHHHHHT
T ss_pred chH-----HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCC-HHHHHHHHHHHHh
Confidence 111 1223332222 457899999999999998742 2211 235788888888775 9999999999988
Q ss_pred HhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHH
Q 003227 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQ 661 (837)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~ 661 (837)
+.. .+.++.|+.++.++++.++..|+.+|..+....+ .+++.|+.++.+ +++.+|
T Consensus 155 ~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~~~L~~~l~d---~~~~vR 209 (280)
T 1oyz_A 155 IND--------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQD---KNEEVR 209 (280)
T ss_dssp C-----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTC---SCHHHH
T ss_pred cCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HHHHHHHHHhcC---CCHHHH
Confidence 764 2478999999999999999999999999854321 356788888877 889999
Q ss_pred HHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcH
Q 003227 662 ERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSK 741 (837)
Q Consensus 662 ~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~ 741 (837)
..|+.+|.++. ....++.|+..+.+++ ++..|+.+|..+.. ...++.|..++.+.+++
T Consensus 210 ~~A~~aL~~~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~ 267 (280)
T 1oyz_A 210 IEAIIGLSYRK----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDN 267 (280)
T ss_dssp HHHHHHHHHTT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCc
Confidence 99999999865 3457899999998754 89999999999874 35788999999876666
Q ss_pred HHHHHHHHHHH
Q 003227 742 MARFMAALALA 752 (837)
Q Consensus 742 ~~~~~a~~aL~ 752 (837)
.+...+..+|.
T Consensus 268 ~~~~~~~~~l~ 278 (280)
T 1oyz_A 268 EIITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 77777777664
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.60 E-value=7.1e-13 Score=143.73 Aligned_cols=361 Identities=14% Similarity=0.090 Sum_probs=266.7
Q ss_pred hHHHHHHhhhc-CCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc--CChhHHHHHHHHHHHhc
Q 003227 380 GAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLS 456 (837)
Q Consensus 380 ~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~ 456 (837)
.|+.|..-+.+ .-.+.|..|...|..++..-. .-+.+++++.|+..|+. +|.++...++++|.++.
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~-----------~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR-----------LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNII 90 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT-----------THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH-----------HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 47888888854 558899999999999874322 24667899999999987 48889999999998865
Q ss_pred c-ChH-----------------HHHHH-HHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--cchHHHHhh-CCHHH
Q 003227 457 V-NAK-----------------VAKAV-AEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIADA-GGVKA 514 (837)
Q Consensus 457 ~-~~~-----------------~~~~i-~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~-g~i~~ 514 (837)
. +++ ..+.+ .+.++|+.|+.+|++.+..++..++..|..|+.+. .+++.+... +|++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~ 170 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSR 170 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHH
Confidence 5 321 22233 34566999999999999999999999999999643 488888855 99999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-chHHHHhcCcHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCCCCC
Q 003227 515 LVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSNS 590 (837)
Q Consensus 515 L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~ 590 (837)
|+.+|. +..+.++..++..|.+|+.+.. .++.+.-.|+++.|+.++.... ...+...|+.+|.||... ++
T Consensus 171 Lv~lL~---d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~---N~ 244 (651)
T 3grl_A 171 LMDLLA---DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN---NN 244 (651)
T ss_dssp HHGGGG---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHh---CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc---CH
Confidence 999995 4778899999999999999654 5555555699999999998643 136778999999999987 77
Q ss_pred cccchhhccchHHHHHHHcCCCCH------HHHHH---HHHHHHhhcCC-------hhhHHHHHHcCCHHHHHHHHhhcC
Q 003227 591 NNSAVGQEAGALEALVQLTRSPHE------GVRQE---AAGALWNLSFD-------DRNREAIAAAGGVEALVVLAQSCS 654 (837)
Q Consensus 591 ~~~~~~~~~~~i~~L~~lL~~~~~------~~~~~---a~~~L~~Ls~~-------~~~~~~l~~~g~i~~L~~ll~~~~ 654 (837)
.++..+.+.++++.|..++..+++ ....+ +..++.-|... ..++..+.+.|+++.|++++.+ .
T Consensus 245 sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~-~ 323 (651)
T 3grl_A 245 SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA-T 323 (651)
T ss_dssp HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC-S
T ss_pred HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc-C
Confidence 789999999999999999975432 23333 44555555443 2468889999999999999986 3
Q ss_pred CCCHHHHHHHHHHHHhcccC-ccchhhhhccC-----ChHHHHHH----hcc-CCHHHHHHHHHHHHHHcC-CcccHHHH
Q 003227 655 NASPGLQERAAGALWGLSVS-EANCIAIGREG-----GVAPLIAL----ARS-EAEDVHETAAGALWNLAF-NPGNALRI 722 (837)
Q Consensus 655 ~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~-----~i~~L~~l----L~s-~~~~v~~~a~~~L~~l~~-~~~~~~~i 722 (837)
.....++..|+.+++.+..+ +.++..+.+.. ..+.++.+ +.+ ....+|.+|+.++..+.. ++..+..+
T Consensus 324 ~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i 403 (651)
T 3grl_A 324 GVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEI 403 (651)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45788999999999998864 66777766532 23444443 444 457899999999999876 44455555
Q ss_pred HHc----------CCH---HHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 723 VEE----------GGV---PALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 723 ~~~----------~~i---~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
+.. ..+ ..|..-+-+.+ +.----|+.+|..+..+++
T Consensus 404 ~~~llp~~~~~~~~~~s~g~ll~~~l~s~d-~~~~wfAavil~hll~~n~ 452 (651)
T 3grl_A 404 VSTLLPSTIDATGNTVSAGQLLCGGLFSTD-SLSNWCAAVALAHALQENA 452 (651)
T ss_dssp HHTTSSCCCCCTTSSSCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHTTCH
T ss_pred HHhcCCcccccCCCCCCcchhhhhhhccCc-hHHHHHHHHHHHHHHcCCH
Confidence 532 111 12344444444 4222337777888777765
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.60 E-value=3e-13 Score=146.65 Aligned_cols=388 Identities=14% Similarity=0.069 Sum_probs=278.8
Q ss_pred hHHHhhhHHHHHHhhhc--CCHHHHHHHHHHhhccccccCcccc--------c--chhhHHH-HHHhCcHHHHHHHHhcC
Q 003227 374 DFWLKQGAGLLLSLMQS--TQEDVQERAATGLATFVVINDENAS--------I--DCGRAEA-VMKDGGIRLLLDLAKSW 440 (837)
Q Consensus 374 ~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~--------~--~~~~~~~-i~~~g~i~~Lv~lL~~~ 440 (837)
.-+...|++.|+..|+. .|.++...+...|.++...++.... . .....+. +.+.+.++.|+.+|+++
T Consensus 55 ~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~ 134 (651)
T 3grl_A 55 LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF 134 (651)
T ss_dssp THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC
T ss_pred HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc
Confidence 33567789999999954 5788888888888876655433110 0 0112222 34678899999999999
Q ss_pred ChhHHHHHHHHHHHhcc-ChH-HHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-cchHHHHhhCCHHHHH
Q 003227 441 REGLQSEAAKAIANLSV-NAK-VAKAVAEE-GGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALV 516 (837)
Q Consensus 441 ~~~~~~~a~~~L~~l~~-~~~-~~~~i~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~ 516 (837)
+..+|..++..|..++. .++ .++.|... +|++.|+.+|.+..+.+|..|+..|.+|+.+. +.++.+.-.|+++.|+
T Consensus 135 df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf 214 (651)
T 3grl_A 135 DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLL 214 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHH
Confidence 99999999999999987 555 88888865 88999999999999999999999999999865 7777777789999999
Q ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCH-----HHHH---HHHHHHHHHhcCC
Q 003227 517 DLIFKWS-SGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFE-----GVQE---QAARALANLAAHG 586 (837)
Q Consensus 517 ~lL~~~~-~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~-----~~~~---~a~~~L~~l~~~~ 586 (837)
.+++.-. .+...+...++.+|.||... +.++..+.+.|+++.|..++...++. .... .+..+++-+...+
T Consensus 215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN 294 (651)
T ss_dssp HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 9997511 12347889999999999984 56899999999999999999754321 1223 3666667776643
Q ss_pred CC---CCcccchhhccchHHHHHHHcCCC--CHHHHHHHHHHHHhhcCC-hhhHHHHHHcC-----CHHHHHH----HHh
Q 003227 587 DS---NSNNSAVGQEAGALEALVQLTRSP--HEGVRQEAAGALWNLSFD-DRNREAIAAAG-----GVEALVV----LAQ 651 (837)
Q Consensus 587 ~~---~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g-----~i~~L~~----ll~ 651 (837)
.. ...++..+.+.|+++.|++++... ...++..|+.+++.+... +.++..+.+.. ..+.++. ++.
T Consensus 295 ~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~ 374 (651)
T 3grl_A 295 NPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVN 374 (651)
T ss_dssp SCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhc
Confidence 32 345778888999999999998765 678999999999997775 67788887643 2233444 343
Q ss_pred hcCCCCHHHHHHHHHHHHhcccC-ccchhhhhcc----------CCh---HHHHHHhccCCHHHHHHHHHHHHHHcC-Cc
Q 003227 652 SCSNASPGLQERAAGALWGLSVS-EANCIAIGRE----------GGV---APLIALARSEAEDVHETAAGALWNLAF-NP 716 (837)
Q Consensus 652 ~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~----------~~i---~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~ 716 (837)
+ .....+|.+|+.++..+..+ ++.+..+... ..+ ..+...+-+.++--.-.|+.+|.++-. ++
T Consensus 375 ~--~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~ 452 (651)
T 3grl_A 375 E--RQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENA 452 (651)
T ss_dssp T--TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred c--cccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCH
Confidence 3 46788999999999888754 4444444432 111 124455556677555557777777766 44
Q ss_pred ccHHHHHH------cC-----CHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCcchh
Q 003227 717 GNALRIVE------EG-----GVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFA 763 (837)
Q Consensus 717 ~~~~~i~~------~~-----~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~~~~ 763 (837)
..+..+.+ .| .++.+...+..+.++.++..-...|..+..+.++++.
T Consensus 453 ~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~ 510 (651)
T 3grl_A 453 TQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVT 510 (651)
T ss_dssp HHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHH
Confidence 44444432 11 1566677776555677777777788888888886653
No 48
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=1.8e-13 Score=147.70 Aligned_cols=208 Identities=13% Similarity=0.134 Sum_probs=116.0
Q ss_pred ccccCCCCCcCCHHHHHHHHH---hCCCcceeeecCcccc------hHHH----H--HcCCCccEEecCCCCCCCHH---
Q 003227 80 WSSLDLRAHKCDIAMAASLAS---RCMNLQKLRFRGAESA------DSII----H--LQARNLRELSGDYCRKITDA--- 141 (837)
Q Consensus 80 ~~~l~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~------~~~~----~--~~~~~L~~L~l~~c~~~~~~--- 141 (837)
.++++++...++......+.. .+++|++|+|++|... ...+ . ..+++|++|++++|. +++.
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~ 112 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQE 112 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHH
T ss_pred ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHH
Confidence 456666666666655444432 4566777777665221 0111 1 156677777777655 4442
Q ss_pred HHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhc---C---------CCCCEEEecCCCCCCHHHHHHH---HhhCCC
Q 003227 142 TLSVIVARHEALESLQLGPDFCERITSDAVKAIALC---C---------PKLKKLRLSGIRDICGDAINAL---AKLCPN 206 (837)
Q Consensus 142 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~---~---------~~L~~L~l~~~~~i~~~~~~~l---~~~~~~ 206 (837)
.+......+++|++|+++ +| .+++.+...++.. + ++|++|+++++ .+++.++..+ ...+++
T Consensus 113 ~l~~~l~~~~~L~~L~L~--~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLH--NN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp HHHHHHHHCTTCCEEECC--SS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHhCCCCCEEECc--CC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCC
Confidence 233334556777777774 23 4554444333322 2 66777777766 5655544432 235567
Q ss_pred ccEEEecCCCCCChH--------HhhCCCCCCEeeccCCCCCCHHHHHHH---HhcCCCccEEEeccCCCCHHHHHHHHh
Q 003227 207 LTDIGFLDCLNVDEV--------ALGNVLSVRFLSVAGTSNMKWGVVSQV---WHKLPKLVGLDVSRTDVGPITISRLLT 275 (837)
Q Consensus 207 L~~L~l~~~~~~~~~--------~l~~l~~L~~L~ls~~~~i~~~~l~~~---~~~~~~L~~L~l~~~~i~~~~l~~l~~ 275 (837)
|++|++++| .+++. .+..+++|++|++++| .+++.+...+ ...+++|++|+|++|.+++.+...+..
T Consensus 189 L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 189 LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred cCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 777777776 45543 2345667777777665 3555443333 345666777777777776665554433
Q ss_pred c-----Ccccccccccccccccchh
Q 003227 276 S-----SKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 276 ~-----~~~L~~l~l~~c~~i~~~~ 295 (837)
. +++|+.|++++|. +++.+
T Consensus 267 ~l~~~~~~~L~~L~L~~n~-i~~~g 290 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNE-IELDA 290 (386)
T ss_dssp HHHTCSSCCCCEEECCSSC-CBHHH
T ss_pred HHhhccCCCeEEEECcCCc-CCHHH
Confidence 2 5667777777665 66644
No 49
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.1e-13 Score=149.59 Aligned_cols=192 Identities=13% Similarity=0.114 Sum_probs=102.4
Q ss_pred HhCCCcceeeecCcccchHHHHH------cCCCccEEecCCCC--CCC---HHHHHHH---HhcCCCCCeEEeCCCCCCC
Q 003227 100 SRCMNLQKLRFRGAESADSIIHL------QARNLRELSGDYCR--KIT---DATLSVI---VARHEALESLQLGPDFCER 165 (837)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~c~--~~~---~~~l~~~---~~~~~~L~~L~l~~~~~~~ 165 (837)
..+++|++|+|++|...+..... .+++|++|++++|. .++ ..++..+ ...+++|++|+++ .+.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls---~n~ 105 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS---DNA 105 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC---SCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC---CCc
Confidence 44566666666666555432211 45666666666652 121 1222222 2355666666664 224
Q ss_pred CCHHHHH---HHHhcCCCCCEEEecCCCCCCHHHHHHHHhh---C---------CCccEEEecCCCCCChH-------Hh
Q 003227 166 ITSDAVK---AIALCCPKLKKLRLSGIRDICGDAINALAKL---C---------PNLTDIGFLDCLNVDEV-------AL 223 (837)
Q Consensus 166 ~~~~~l~---~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~---~---------~~L~~L~l~~~~~~~~~-------~l 223 (837)
+++.+.. .....+++|++|+|++| .+++.+...+... + ++|++|++++| .+++. .+
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTF 183 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHH
Confidence 4443222 22234666666666666 5555544433322 2 66666666666 34432 23
Q ss_pred hCCCCCCEeeccCCCCCCHHHHHHHH----hcCCCccEEEeccCCCCHHHHHHHH---hcCcccccccccccccccchhH
Q 003227 224 GNVLSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVGPITISRLL---TSSKSLKVLCALNCPVLEEENN 296 (837)
Q Consensus 224 ~~l~~L~~L~ls~~~~i~~~~l~~~~----~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~l~l~~c~~i~~~~~ 296 (837)
..+++|++|++++| .+++.++..+. ..+++|+.|+|++|.+++.+...+. ..+++|+.|++++|. +++.+.
T Consensus 184 ~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~ 261 (386)
T 2ca6_A 184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA 261 (386)
T ss_dssp HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhH
Confidence 45666666666665 55655544433 3566666666666666654444332 345666666666665 666553
Q ss_pred HH
Q 003227 297 IS 298 (837)
Q Consensus 297 ~~ 298 (837)
..
T Consensus 262 ~~ 263 (386)
T 2ca6_A 262 AA 263 (386)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.54 E-value=1.5e-12 Score=133.80 Aligned_cols=232 Identities=14% Similarity=-0.013 Sum_probs=183.6
Q ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 003227 464 AVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD 543 (837)
Q Consensus 464 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~ 543 (837)
.+.+.+.++.|++.|.++++.++..|+.+|+++.. .+.++.|+.++. +.++.++..|+++|+.+...
T Consensus 18 ~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~ 84 (280)
T 1oyz_A 18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKIC 84 (280)
T ss_dssp HHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCC
T ss_pred HHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccc
Confidence 34556789999999999999999999999999873 236888999994 57899999999999998754
Q ss_pred CCchHHHHhcCcHHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHH
Q 003227 544 DKCSMEVALAGGVHALVM-LARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAG 622 (837)
Q Consensus 544 ~~~~~~l~~~g~i~~L~~-ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 622 (837)
+..... .++.+.. ++.+. ++.++..++.+|.++.... + ......++.|+.++.++++.++..|+.
T Consensus 85 ~~~~~~-----l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~---~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~ 150 (280)
T 1oyz_A 85 KKCEDN-----VFNILNNMALNDK-SACVRATAIESTAQRCKKN---P-----IYSPKIVEQSQITAFDKSTNVRRATAF 150 (280)
T ss_dssp TTTHHH-----HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHC---G-----GGHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred cccchH-----HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccC---C-----cccHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 432221 2344443 33444 5899999999999997521 1 112467899999999999999999999
Q ss_pred HHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHH
Q 003227 623 ALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVH 702 (837)
Q Consensus 623 ~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~ 702 (837)
+|.++.. .++++.|+.++.+ +++.+|..|+++|..+.... ...++.|+.++.++++.++
T Consensus 151 aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR 209 (280)
T 1oyz_A 151 AISVIND----------KATIPLLINLLKD---PNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVR 209 (280)
T ss_dssp HHHTC-------------CCHHHHHHHHTC---SSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHH
T ss_pred HHHhcCC----------HHHHHHHHHHHcC---CCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHH
Confidence 9998754 3589999999987 89999999999999875321 2357889999999999999
Q ss_pred HHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 703 ETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 703 ~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
..|+.+|.++. ...+++.|+..+.+++ ++..|+.+|+.+..
T Consensus 210 ~~A~~aL~~~~----------~~~~~~~L~~~l~d~~---vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 210 IEAIIGLSYRK----------DKRVLSVLCDELKKNT---VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHHTT----------CGGGHHHHHHHHTSSS---CCHHHHHHHHHHCC
T ss_pred HHHHHHHHHhC----------CHhhHHHHHHHhcCcc---HHHHHHHHHHhcCc
Confidence 99999999987 2457899999998643 88999999999854
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.53 E-value=5.9e-13 Score=152.89 Aligned_cols=342 Identities=15% Similarity=0.088 Sum_probs=247.7
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV- 457 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~- 457 (837)
.-+|.+.++++++++.+|..|+.+|+.++..... .......+|.+..+++++++.+|..|+.+|..++.
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----------DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----------HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----------HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 3458888888999999999999999998753221 12345678889999999999999999999999876
Q ss_pred -ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003227 458 -NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (837)
Q Consensus 458 -~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (837)
.++. .....++.+.+++++++..+|..++.+|+.++..... .......++.++.++. +.+++++..|+.+
T Consensus 234 ~~~~~----~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~---d~~~~vr~~a~~~ 304 (588)
T 1b3u_A 234 LPQED----LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMK---DCEAEVRAAASHK 304 (588)
T ss_dssp SCHHH----HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred CCHHH----HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhC---CCcHHHHHHHHHH
Confidence 2211 1223578888888899999999999999999853111 1123346788888884 5788999999999
Q ss_pred HHHhhcC--CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCH
Q 003227 537 LANLAAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (837)
Q Consensus 537 L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 614 (837)
|..++.. ++.+........++.+..++.+.+ +.++..++.+|..++..- .. .......++.+..+++++++
T Consensus 305 l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~---~~---~~~~~~l~p~l~~~l~d~~~ 377 (588)
T 1b3u_A 305 VKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPIL---GK---DNTIEHLLPLFLAQLKDECP 377 (588)
T ss_dssp HHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHH---CH---HHHHHHTHHHHHHHHTCSCH
T ss_pred HHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHh---hH---hHHHHHHHHHHHHHhCCCch
Confidence 9999873 232222233456788888888775 899999999999887531 10 11123567888999999999
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHh
Q 003227 615 GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA 694 (837)
Q Consensus 615 ~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL 694 (837)
+++..++.++..+...-... . .....++.+..++.+ .++.+|..++.++..++..-.. .......++.+...+
T Consensus 378 ~Vr~~a~~~l~~l~~~~~~~-~-~~~~~lp~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l 450 (588)
T 1b3u_A 378 EVRLNIISNLDCVNEVIGIR-Q-LSQSLLPAIVELAED---AKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWL 450 (588)
T ss_dssp HHHHHHHTTCHHHHHHSCHH-H-HHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhcCHH-H-HHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHh
Confidence 99999998888776431111 1 112356777888776 8999999999999998753111 112223567788889
Q ss_pred ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 695 RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 695 ~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
.+++..|+..|+.++..++..-... ......+|.|+.++.++ +..+|..++.+++.+..
T Consensus 451 ~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 451 VDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSE 509 (588)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999999987632221 12345678888777655 47899999999998865
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=5.8e-13 Score=147.83 Aligned_cols=212 Identities=19% Similarity=0.223 Sum_probs=112.2
Q ss_pred ccccCCCCCcCCHHHHHHHHHhCC----CcceeeecCcccchH----HHHH--cCCCccEEecCCCCCCCHHHHHHHHhc
Q 003227 80 WSSLDLRAHKCDIAMAASLASRCM----NLQKLRFRGAESADS----IIHL--QARNLRELSGDYCRKITDATLSVIVAR 149 (837)
Q Consensus 80 ~~~l~l~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~~~~----~~~~--~~~~L~~L~l~~c~~~~~~~l~~~~~~ 149 (837)
.++++++...+++.....+...++ +|++|++++|...+. +... .+++|++|++++|. +++.+...+...
T Consensus 58 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~ 136 (461)
T 1z7x_W 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEG 136 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHH
T ss_pred cCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHH
Confidence 456666666665555555555444 466666666655431 1111 45666666666655 555555444432
Q ss_pred ----CCCCCeEEeCCCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCCHHHHHHHHh----hCCCccEEEecCCCCC
Q 003227 150 ----HEALESLQLGPDFCERITSDAVKAI---ALCCPKLKKLRLSGIRDICGDAINALAK----LCPNLTDIGFLDCLNV 218 (837)
Q Consensus 150 ----~~~L~~L~l~~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~----~~~~L~~L~l~~~~~~ 218 (837)
.++|++|+++ +| .+++.+...+ ...+++|++|+++++ .+++.++..+.. ..++|++|++++| .+
T Consensus 137 l~~~~~~L~~L~L~--~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l 211 (461)
T 1z7x_W 137 LLDPQCRLEKLQLE--YC-SLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GV 211 (461)
T ss_dssp HTSTTCCCCEEECT--TS-CCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CC
T ss_pred HhcCCCcceEEECC--CC-CCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CC
Confidence 3356666664 23 4444333222 233566666666666 366555554443 2346666666666 34
Q ss_pred ChH-------HhhCCCCCCEeeccCCCCCCHHHHHHHHh----cCCCccEEEeccCCCCHHHHHHHH---hcCccccccc
Q 003227 219 DEV-------ALGNVLSVRFLSVAGTSNMKWGVVSQVWH----KLPKLVGLDVSRTDVGPITISRLL---TSSKSLKVLC 284 (837)
Q Consensus 219 ~~~-------~l~~l~~L~~L~ls~~~~i~~~~l~~~~~----~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~l~ 284 (837)
++. .+..+++|++|++++| .+++.++..+.. .+++|++|++++|.+++.++..+. ..+++|++|+
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence 332 2345566666666665 455555444332 355666666666666655533332 2356666666
Q ss_pred ccccccccchhHHHH
Q 003227 285 ALNCPVLEEENNISA 299 (837)
Q Consensus 285 l~~c~~i~~~~~~~~ 299 (837)
+++|. +++.+...+
T Consensus 291 Ls~n~-i~~~~~~~l 304 (461)
T 1z7x_W 291 LAGNE-LGDEGARLL 304 (461)
T ss_dssp CTTCC-CHHHHHHHH
T ss_pred CCCCC-CchHHHHHH
Confidence 66664 555553333
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=1.5e-13 Score=152.59 Aligned_cols=67 Identities=13% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCCCEeeccCCCCCCHHHH---HHHHhcCCCccEEEeccCCCCHHHHHHHHh----cCcccccccccccccccchh
Q 003227 227 LSVRFLSVAGTSNMKWGVV---SQVWHKLPKLVGLDVSRTDVGPITISRLLT----SSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 227 ~~L~~L~ls~~~~i~~~~l---~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~----~~~~L~~l~l~~c~~i~~~~ 295 (837)
++|++|++++| .+++.+. ......+++|++|++++|.+++.++..+.. .+++|+.|++++|. +++.+
T Consensus 199 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~ 272 (461)
T 1z7x_W 199 CQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKG 272 (461)
T ss_dssp CCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHH
T ss_pred CCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHH
Confidence 35555555544 3333322 122233455555555555555444443332 24455555555553 44444
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.50 E-value=1.2e-12 Score=150.29 Aligned_cols=344 Identities=13% Similarity=0.013 Sum_probs=248.2
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV- 457 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~- 457 (837)
..+|.+.+++.+.+..+|..|+.+|+.++..... .......++.++.+++++++.+|..|+.+|..++.
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP----------EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH----------HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc----------ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 3468888888888999999999999987743211 12334568899999999999999999999999876
Q ss_pred -ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003227 458 -NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (837)
Q Consensus 458 -~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (837)
.++.+....-...++.+..++++++..++..++.+|..++..-.. .......+|.+..++. +.+++++..++.+
T Consensus 312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~---d~~~~Vr~~a~~~ 386 (588)
T 1b3u_A 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLK---DECPEVRLNIISN 386 (588)
T ss_dssp SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHT---CSCHHHHHHHHTT
T ss_pred hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhC---CCchHHHHHHHHH
Confidence 222222122233578888899999999999999999998752111 1112346788888884 5788999999998
Q ss_pred HHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHH
Q 003227 537 LANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (837)
Q Consensus 537 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~ 616 (837)
+..+...-.. .......++.+..++.+.+ ..++..++.++..++..- . ........++.+..++.+++..+
T Consensus 387 l~~l~~~~~~--~~~~~~~lp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~---~---~~~~~~~l~~~l~~~l~d~~~~V 457 (588)
T 1b3u_A 387 LDCVNEVIGI--RQLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQL---G---VEFFDEKLNSLCMAWLVDHVYAI 457 (588)
T ss_dssp CHHHHHHSCH--HHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHH---C---GGGCCHHHHHHHHHGGGCSSHHH
T ss_pred HHHHHHhcCH--HHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHc---C---HHHHHHHHHHHHHHHhcCCcHHH
Confidence 8888753211 1112346788888887754 889999999999987531 1 01123457889999999999999
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhcc
Q 003227 617 RQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS 696 (837)
Q Consensus 617 ~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s 696 (837)
|+.|+.++..++..-.... .....++.|..++.+ .+..+|..++.++..++..-.. .......++.++..+++
T Consensus 458 r~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~---~~~~~R~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d 530 (588)
T 1b3u_A 458 REAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD---PNYLHRMTTLFCINVLSEVCGQ--DITTKHMLPTVLRMAGD 530 (588)
T ss_dssp HHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC---SCHHHHHHHHHHHHHHHHHHHH--HHHHHHTHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhCCC
Confidence 9999999999876522221 123467777776665 8899999999999998753111 11223578889999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 697 EAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 697 ~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
+++.||..++++|..++..-.. .......+|.|..++.++ ++.+|..|..|+..+..
T Consensus 531 ~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~l~~d~-d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 531 PVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQDQ-DVDVKYFAQEALTVLSL 587 (588)
T ss_dssp SCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhhc
Confidence 9999999999999999863221 223345566777766655 58999999999998753
No 55
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.47 E-value=4.9e-13 Score=160.29 Aligned_cols=353 Identities=15% Similarity=-0.008 Sum_probs=237.2
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChH
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (837)
++.+++.+.++++.++..|..+|+.++............. . .-...++.+++.++++++.+|..|+++|..+.....
T Consensus 130 l~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~--~-~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD--R-PLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSS--S-CHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhc--c-hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 5889999999999999999999999885543321000000 0 012356788888889999999999999998876321
Q ss_pred HHHHHHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-c-chHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003227 461 VAKAVAE--EGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-E-HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (837)
Q Consensus 461 ~~~~i~~--~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~-~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (837)
. .+.. ...++.+.+++.++++.++..|+.+|..++... + ....+ + +.++.++..+. +.++.++..|+..
T Consensus 207 ~--~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~-~l~~~l~~~~~---~~~~~vr~~a~e~ 279 (852)
T 4fdd_A 207 Q--ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-H-NIVEYMLQRTQ---DQDENVALEACEF 279 (852)
T ss_dssp H--HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-H-HHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-H-HHHHHHHHHcc---CCcHHHHHHHHHH
Confidence 1 1111 124778888888999999999999999998632 1 11111 1 24666666664 5788999999999
Q ss_pred HHHhhcCCCchHHHHhc---CcHHHHHHHHh----------cC-----------CCHHHHHHHHHHHHHHhcCCCCCCcc
Q 003227 537 LANLAADDKCSMEVALA---GGVHALVMLAR----------SC-----------KFEGVQEQAARALANLAAHGDSNSNN 592 (837)
Q Consensus 537 L~~l~~~~~~~~~l~~~---g~i~~L~~ll~----------~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (837)
+..++.....+..+ .. ..++.++..+. .. .+..++..|+.+|..++... +
T Consensus 280 l~~l~~~~~~~~~~-~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~---~-- 353 (852)
T 4fdd_A 280 WLTLAEQPICKDVL-VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY---R-- 353 (852)
T ss_dssp HHHHTTSTTHHHHH-TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH---G--
T ss_pred HHHHhcchhHHHHH-HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc---c--
Confidence 99998765444322 21 34566666551 11 11246888999999988641 1
Q ss_pred cchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 593 SAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 593 ~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
..+ -..+++.+...+.++++.+|+.|+.+|.+++......-.-.-.+.++.++.++.+ +++.+|..|++++.+++
T Consensus 354 -~~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d---~~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 354 -DEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD---KKALVRSITCWTLSRYA 428 (852)
T ss_dssp -GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTH
T ss_pred -HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHH
Confidence 111 1356788888889999999999999999999874321111113467888888876 89999999999999998
Q ss_pred cC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHH
Q 003227 673 VS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALAL 751 (837)
Q Consensus 673 ~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL 751 (837)
.. +.......-.+.++.|+..+.++++.++..|+++|.+++........-.-...++.|+..+...+ ......+..++
T Consensus 429 ~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~-~~~~~~~~~ai 507 (852)
T 4fdd_A 429 HWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ-HKNLLILYDAI 507 (852)
T ss_dssp HHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC-HHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence 63 11111111234678888888889999999999999999863221110011345777888887654 44445566666
Q ss_pred HHhh
Q 003227 752 AYMF 755 (837)
Q Consensus 752 ~~l~ 755 (837)
+.+.
T Consensus 508 ~~l~ 511 (852)
T 4fdd_A 508 GTLA 511 (852)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 56
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.45 E-value=1.2e-12 Score=156.85 Aligned_cols=346 Identities=13% Similarity=-0.003 Sum_probs=238.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (837)
+.+++.|.++++.+|..++.++..++..+... .+ .+.++.|+..+.++++.++..|+.+|+.++.+..
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~------~w-----p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~- 160 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKGELQ------NW-----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA- 160 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT------TC-----TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc------cc-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhH-
Confidence 67888888888999999999999988654221 11 3457899999999999999999999999986321
Q ss_pred HHHHHH-------cCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHh--hCCHHHHHHHHHhhCCCCHHHHHH
Q 003227 462 AKAVAE-------EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGGDGVLER 532 (837)
Q Consensus 462 ~~~i~~-------~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--~g~i~~L~~lL~~~~~~~~~~~~~ 532 (837)
..+.. ...++.+++.++++++.++..|+.+|..+...... .+.. ...++.+..++ .+++++++..
T Consensus 161 -~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~--~~~~~~~~~l~~l~~~~---~d~~~~vr~~ 234 (852)
T 4fdd_A 161 -EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ--ALMLHIDSFIENLFALA---GDEEPEVRKN 234 (852)
T ss_dssp -THHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH--HHHTSHHHHHHHHHHHH---TCCCHHHHHH
T ss_pred -HHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHc---CCCCHHHHHH
Confidence 11111 11366677777888999999999999988754221 1111 13456666766 4588999999
Q ss_pred HHHHHHHhhcCCC-c-hHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchh--hccchHHHHHHH
Q 003227 533 AAGALANLAADDK-C-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVG--QEAGALEALVQL 608 (837)
Q Consensus 533 a~~~L~~l~~~~~-~-~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~i~~L~~l 608 (837)
++.+|..++.... . ...+ .+.++.++..+.+.+ +.++..|+.++..++... ..+..+ .-...++.++..
T Consensus 235 a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~-~~vr~~a~e~l~~l~~~~----~~~~~~~~~~~~l~p~ll~~ 307 (852)
T 4fdd_A 235 VCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQD-ENVALEACEFWLTLAEQP----ICKDVLVRHLPKLIPVLVNG 307 (852)
T ss_dssp HHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTST----THHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCc-HHHHHHHHHHHHHHhcch----hHHHHHHHHHHHHHHHHHHH
Confidence 9999999987321 1 1111 136777777777764 899999999999998631 111111 112556777777
Q ss_pred c-----------CC-----------CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 003227 609 T-----------RS-----------PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAG 666 (837)
Q Consensus 609 L-----------~~-----------~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~ 666 (837)
+ .+ .+..++..|+.+|..++...+. .+.. ..++.+.+++.+ .++.+|..|+.
T Consensus 308 l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~---~~~~~R~aa~~ 381 (852)
T 4fdd_A 308 MKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFH---HEWVVKESGIL 381 (852)
T ss_dssp TSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTC---SSHHHHHHHHH
T ss_pred cCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcC---CCHHHHHHHHH
Confidence 6 23 1224688899999888764221 1111 246666677766 78999999999
Q ss_pred HHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcc-cHHHHHHcCCHHHHHHHHhcCCcHHHHH
Q 003227 667 ALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG-NALRIVEEGGVPALVHLCSSSGSKMARF 745 (837)
Q Consensus 667 ~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~i~~~~~i~~L~~ll~~~~~~~~~~ 745 (837)
+|+.++........-.-.+.++.++..+.++++.|+..|++++.+++..-. ......-...++.|++.+.++ ++.+|.
T Consensus 382 alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~ 460 (852)
T 4fdd_A 382 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQE 460 (852)
T ss_dssp HHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHH
Confidence 999999753321111224568889999999999999999999999986211 000111124577888888766 488999
Q ss_pred HHHHHHHHhhCCCC
Q 003227 746 MAALALAYMFDGRM 759 (837)
Q Consensus 746 ~a~~aL~~l~~~~~ 759 (837)
.|+.+|.++.....
T Consensus 461 ~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 461 AACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999986443
No 57
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=5.1e-12 Score=134.24 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=103.6
Q ss_pred CCcceeeecCcccchHHH----HH---cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHH
Q 003227 103 MNLQKLRFRGAESADSII----HL---QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIA 175 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~----~~---~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 175 (837)
++|+.|++++|...+... .. .+++|++|+|++|. +++.++..+...+++|++|+|+ +| .+++.+...++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls--~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQ--LN-SLGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECC--SS-CCCHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcC--CC-CCCHHHHHHHH
Confidence 456677777665543211 11 23577777777765 6777666666666677777774 23 66766666554
Q ss_pred h----cCCCCCEEEecCCCCCCHHHHHHHH---hhCCCccEEEecCCCCCChHH-------hhCCCCCCEeeccCCCCCC
Q 003227 176 L----CCPKLKKLRLSGIRDICGDAINALA---KLCPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTSNMK 241 (837)
Q Consensus 176 ~----~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~-------l~~l~~L~~L~ls~~~~i~ 241 (837)
. .+++|++|+|++| .+++.++..++ ..+++|++|+|++| .+++.+ +..+++|++|+|++| .++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCC
Confidence 3 3466777777777 67776655553 34567777777777 466543 244567777777765 566
Q ss_pred HHHHHHHH---hcCCCccEEEeccCCCCHHHHHHHHh
Q 003227 242 WGVVSQVW---HKLPKLVGLDVSRTDVGPITISRLLT 275 (837)
Q Consensus 242 ~~~l~~~~---~~~~~L~~L~l~~~~i~~~~l~~l~~ 275 (837)
+.+...+. ..+++|++|+|++|.+++.+...+..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 66655444 34566777777777777777766654
No 58
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=138.46 Aligned_cols=174 Identities=19% Similarity=0.183 Sum_probs=142.9
Q ss_pred HHHHcCCCccEEecCCCCCCCHHHHHHHHhc----CCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCH
Q 003227 119 IIHLQARNLRELSGDYCRKITDATLSVIVAR----HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICG 194 (837)
Q Consensus 119 ~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~----~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~ 194 (837)
++....++|++|++++|. +++.....+... +++|++|+|+ +| .+++.++..++..+++|++|+|++| .+++
T Consensus 66 l~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls--~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~ 140 (372)
T 3un9_A 66 FSAEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLA--SC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGP 140 (372)
T ss_dssp HHHHHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECT--TC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCH
T ss_pred HHHHHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEec--CC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCH
Confidence 444467899999999988 888776665543 3699999996 34 7999999998888899999999999 8999
Q ss_pred HHHHHHHh----hCCCccEEEecCCCCCChHH-------hhCCCCCCEeeccCCCCCCHHHHHHHH---hcCCCccEEEe
Q 003227 195 DAINALAK----LCPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDV 260 (837)
Q Consensus 195 ~~~~~l~~----~~~~L~~L~l~~~~~~~~~~-------l~~l~~L~~L~ls~~~~i~~~~l~~~~---~~~~~L~~L~l 260 (837)
.++..++. .+++|++|+|++| .+++.+ +..+++|++|+|++| .+++.++..+. ..+++|+.|+|
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred HHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 98887754 3589999999999 677743 357899999999997 58888876655 56789999999
Q ss_pred ccCCCCHHHHHHHHh---cCcccccccccccccccchhHHHHH
Q 003227 261 SRTDVGPITISRLLT---SSKSLKVLCALNCPVLEEENNISAV 300 (837)
Q Consensus 261 ~~~~i~~~~l~~l~~---~~~~L~~l~l~~c~~i~~~~~~~~~ 300 (837)
++|.+++.+...+.. .+++|++|++++|. |++.+...+.
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~ 260 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLR 260 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHH
Confidence 999999988776654 56999999999998 9999966554
No 59
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.42 E-value=3.1e-11 Score=137.37 Aligned_cols=332 Identities=16% Similarity=0.094 Sum_probs=234.0
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccCh-
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA- 459 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~- 459 (837)
++.+.+++.+.++.+|..|+.++.+++..+++. +.+.+.++.+..+|.++++.++..|+.+|..++.+.
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~----------~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM----------VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC----------HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh----------cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 578999999999999999999999988755442 344678899999999999999999999999998743
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (837)
+....-...+.+..|++.+.+.++-.+...+.++..+...++. . ....++.+..++ .+.++.++..|++++.+
T Consensus 193 ~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~~~~l~~l~~~l---~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 193 NSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--AQSICERVTPRL---SHANSAVVLSAVKVLMK 265 (591)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--HHHHHHHHTTCS---CSSTTHHHHHHHHHHHH
T ss_pred CccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--HHHHHHHHHHHH---cCCChHHHHHHHHHHHH
Confidence 2100000012366777777788888888888998888753211 0 112345555555 45778999999999999
Q ss_pred hhc----CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHH
Q 003227 540 LAA----DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (837)
Q Consensus 540 l~~----~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 615 (837)
+.. +++....+. ....+.|+.++. + +++++..|+.+|..+.... +. .+. ..+..+. .+.+++..
T Consensus 266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~---p~---~~~--~~~~~~~-~~~~d~~~ 333 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKR---PE---ILK--QEIKVFF-VKYNDPIY 333 (591)
T ss_dssp SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHC---CS---TTT--TCTTTTS-CCTTSCHH
T ss_pred HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhC---hH---HHH--HHHHhhe-eccCChHH
Confidence 874 334433332 345567776554 4 5899999999999998742 21 111 0111111 22244588
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHh
Q 003227 616 VRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALA 694 (837)
Q Consensus 616 ~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL 694 (837)
++..|+..|..++... +... .++.|..++.+ .+.+++..+++++..++.. +.. ....++.|++++
T Consensus 334 Ir~~al~~L~~l~~~~-nv~~-----iv~~L~~~l~~---~d~~~r~~~v~aI~~la~~~~~~-----~~~~v~~Ll~ll 399 (591)
T 2vgl_B 334 VKLEKLDIMIRLASQA-NIAQ-----VLAELKEYATE---VDVDFVRKAVRAIGRCAIKVEQS-----AERCVSTLLDLI 399 (591)
T ss_dssp HHHHHHHHHHHTCCSS-THHH-----HHHHHHHHTTS---SCHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCChh-hHHH-----HHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhChhH-----HHHHHHHHHHHH
Confidence 9999999999988654 3222 35566677766 7899999999999998864 211 123678899999
Q ss_pred ccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 695 RSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 695 ~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
.+..+.++..++.++.++.. +|..+ ..+++.|.+.+.+...+.++..++++|+..+..-++
T Consensus 400 ~~~~~~v~~e~i~~l~~ii~~~p~~~-----~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~ 461 (591)
T 2vgl_B 400 QTKVNYVVQEAIVVIRDIFRKYPNKY-----ESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN 461 (591)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHSCSSC-----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT
T ss_pred cccchHHHHHHHHHHHHHHHHCcchH-----HHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC
Confidence 88888888888888888764 44432 567888888887666688899999999998765543
No 60
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=2.2e-12 Score=137.70 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=6.7
Q ss_pred CccEEEeccCCCCH
Q 003227 254 KLVGLDVSRTDVGP 267 (837)
Q Consensus 254 ~L~~L~l~~~~i~~ 267 (837)
+|++|++++|.+++
T Consensus 197 ~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 197 SVTSLDLSANLLGL 210 (362)
T ss_dssp TCCEEECTTSCGGG
T ss_pred CCCEEECCCCCCCh
Confidence 45555555544433
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=1.5e-11 Score=120.11 Aligned_cols=188 Identities=18% Similarity=0.141 Sum_probs=157.7
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 458 (837)
..++.|++.|+++++.++..|+..|+.+. ...+++.|+.+|.++++.++..|+.+|+.+...
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~ 80 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIG------------------DERAVEPLIKALKDEDAWVRRAAADALGQIGDE 80 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH
Confidence 45789999999999999999999998633 246788999999999999999999999988642
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
+.++.|+++++++++.++..|+.+|..+... ..++.|+.++ .+.++.++..|+.+|+
T Consensus 81 ----------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l---~d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 81 ----------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKAL---KDEDWFVRIAAAFALG 137 (211)
T ss_dssp ----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHT---TCSSHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHH---hCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999998742 4788999988 4588999999999999
Q ss_pred HhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHH
Q 003227 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQ 618 (837)
Q Consensus 539 ~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~ 618 (837)
++.. ...++.|..++.+.+ +.++..++.+|..+.. ...++.|..++.++++.++.
T Consensus 138 ~~~~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~ 192 (211)
T 3ltm_A 138 EIGD----------ERAVEPLIKALKDED-GWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFARK 192 (211)
T ss_dssp HHCC----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHHHH
T ss_pred HcCC----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHHHH
Confidence 9852 347888999998765 8999999999999853 46788999999999999999
Q ss_pred HHHHHHHhhcCChh
Q 003227 619 EAAGALWNLSFDDR 632 (837)
Q Consensus 619 ~a~~~L~~Ls~~~~ 632 (837)
.|..+|.++.....
T Consensus 193 ~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 193 VAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHC------
T ss_pred HHHHHHHhcCCCCC
Confidence 99999999877643
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.37 E-value=3.2e-11 Score=117.82 Aligned_cols=189 Identities=20% Similarity=0.134 Sum_probs=159.3
Q ss_pred HhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHH
Q 003227 426 KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (837)
Q Consensus 426 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 505 (837)
+.+.++.|+..|+++++.+|..|+..|..+... .+++.|++++.++++.++..|+.+|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 356788999999999999999999999987652 378999999999999999999999999874
Q ss_pred HHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 506 l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
.+.++.|+.++. +.++.++..|+.+|+.+.. .+.++.|+.++.+.+ +.++..|+.+|..+..
T Consensus 80 ---~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALK---DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED-WFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ---GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCC-
Confidence 347889999984 5889999999999998853 357889999998765 9999999999999853
Q ss_pred CCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
...++.|..++.++++.++..|+.+|..+.. ..+++.|..++.+ +++.+|..|.
T Consensus 142 -------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~ 195 (211)
T 3ltm_A 142 -------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAV 195 (211)
T ss_dssp -------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHH
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHH
Confidence 3578999999999999999999999999854 2357888899988 8999999999
Q ss_pred HHHHhcccCc
Q 003227 666 GALWGLSVSE 675 (837)
Q Consensus 666 ~~L~~l~~~~ 675 (837)
.+|.++....
T Consensus 196 ~aL~~~~~~~ 205 (211)
T 3ltm_A 196 NYLETHKSFN 205 (211)
T ss_dssp HHHHC-----
T ss_pred HHHHhcCCCC
Confidence 9999987653
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.36 E-value=3e-11 Score=117.03 Aligned_cols=185 Identities=18% Similarity=0.145 Sum_probs=159.0
Q ss_pred hhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 003227 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (837)
Q Consensus 378 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (837)
.++.+.++++|.++++.++..|+.+|+.+. ..++++.|+++|+++++.++..|+.+|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG------------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC------------------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 345689999999999999999999999633 23568899999999999999999999988864
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
. .+++.|+.++.++++.++..|+.+|+.+... ..++.|+.++. +.++.++..|+.+|
T Consensus 75 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~---d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 75 E----------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALK---DEDWFVRIAAAFAL 131 (201)
T ss_dssp G----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3 3689999999999999999999999998642 37888999884 58899999999999
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
+.+.. .+.++.|..++.+.+ +.++..|+.+|..+.. ...++.|..++.++++.++
T Consensus 132 ~~~~~----------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr 186 (201)
T 3ltj_A 132 GEIGD----------ERAVEPLIKALKDED-GWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFAR 186 (201)
T ss_dssp HHHTC----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHHH
T ss_pred HHhCC----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHHH
Confidence 99852 357889999998775 8999999999999853 3678999999999999999
Q ss_pred HHHHHHHHhhc
Q 003227 618 QEAAGALWNLS 628 (837)
Q Consensus 618 ~~a~~~L~~Ls 628 (837)
..|..+|..+.
T Consensus 187 ~~A~~aL~~l~ 197 (201)
T 3ltj_A 187 KVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 64
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=4.9e-12 Score=135.00 Aligned_cols=207 Identities=16% Similarity=0.130 Sum_probs=128.6
Q ss_pred CCCcccccCCCCCcCCH---HHHHHHHHhCC-CcceeeecCcccchHH----HHH--c-CCCccEEecCCCCCCCH---H
Q 003227 76 SPCLWSSLDLRAHKCDI---AMAASLASRCM-NLQKLRFRGAESADSI----IHL--Q-ARNLRELSGDYCRKITD---A 141 (837)
Q Consensus 76 ~~~~~~~l~l~~~~~~~---~~l~~l~~~~~-~L~~L~l~~~~~~~~~----~~~--~-~~~L~~L~l~~c~~~~~---~ 141 (837)
.+...++++++...+++ ..+......++ +|++|++++|...+.. ... . +++|++|++++|. +++ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 34445777787755443 23333444556 7888888888665421 111 2 3888888888876 443 3
Q ss_pred HHHHHHhcC-CCCCeEEeCCCCCCCCCHHHHHHHHh---c-CCCCCEEEecCCCCCCHHHHHHHH---hhCC-CccEEEe
Q 003227 142 TLSVIVARH-EALESLQLGPDFCERITSDAVKAIAL---C-CPKLKKLRLSGIRDICGDAINALA---KLCP-NLTDIGF 212 (837)
Q Consensus 142 ~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~---~-~~~L~~L~l~~~~~i~~~~~~~l~---~~~~-~L~~L~l 212 (837)
.+......+ ++|++|+++ +| .+++.+...+.. . +++|++|+++++ .+++.+...+. ..++ +|++|++
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls--~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLG--WN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHHHHHHTSCTTCCEEECC--SS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHhCCCCccEEECc--CC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeee
Confidence 444444455 788888885 23 455544444332 2 468888888888 67765544432 2234 8888888
Q ss_pred cCCCCCChH-------HhhCC-CCCCEeeccCCCCCCHHHHHHHH----hcCCCccEEEeccCCCCHH---HHHHHHhcC
Q 003227 213 LDCLNVDEV-------ALGNV-LSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVGPI---TISRLLTSS 277 (837)
Q Consensus 213 ~~~~~~~~~-------~l~~l-~~L~~L~ls~~~~i~~~~l~~~~----~~~~~L~~L~l~~~~i~~~---~l~~l~~~~ 277 (837)
++| .+++. .+..+ ++|++|++++| .+++.+...+. ...++|++|++++|.+++. .+..+...+
T Consensus 175 s~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 175 RGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp TTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred cCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 888 45542 23455 48888888887 45554433322 2346888888888877653 444444567
Q ss_pred cccccccccccc
Q 003227 278 KSLKVLCALNCP 289 (837)
Q Consensus 278 ~~L~~l~l~~c~ 289 (837)
++|+.|++++|.
T Consensus 253 ~~L~~L~L~~n~ 264 (362)
T 3goz_A 253 KHLQTVYLDYDI 264 (362)
T ss_dssp TTCSEEEEEHHH
T ss_pred CCccEEEeccCC
Confidence 888888888886
No 65
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.34 E-value=9.9e-13 Score=120.46 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=56.9
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhc---CCCCCEEEecCCCCCCHHHHHHHHh
Q 003227 126 NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC---CPKLKKLRLSGIRDICGDAINALAK 202 (837)
Q Consensus 126 ~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~~ 202 (837)
+|++|++++|. +++.++..+ ..|++|++|+|+ +|..++|.++..++.. |++|++|+|++|+.|||.++..+..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~--~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLC--KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEE--SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeC--CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 56666666665 666666555 356666666664 4666666666666652 4566666666666666666666553
Q ss_pred hCCCccEEEecCCCCCChHH
Q 003227 203 LCPNLTDIGFLDCLNVDEVA 222 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~ 222 (837)
||+|++|++++|+.++|.+
T Consensus 138 -~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 138 -FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -CTTCCEEEEESCTTCCCHH
T ss_pred -CCCCCEEECCCCCCCCchH
Confidence 5666666666666565543
No 66
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.33 E-value=7.4e-11 Score=114.25 Aligned_cols=185 Identities=20% Similarity=0.140 Sum_probs=158.6
Q ss_pred hCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHH
Q 003227 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAI 506 (837)
Q Consensus 427 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l 506 (837)
.+..+.+++.|+++++.+|..|+.+|+.+... +.++.|+++++++++.++..|+.+|+.+...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 35677999999999999999999999987653 3689999999999999999999999988642
Q ss_pred HhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 003227 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (837)
Q Consensus 507 ~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (837)
.+++.|+.++. +.++.++..|+++|+.+.. ...++.|+.++.+.+ +.++..|+.+|..+..
T Consensus 76 ---~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 76 ---RAVEPLIKALK---DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED-WFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ---GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHTC--
T ss_pred ---HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC--
Confidence 47889999984 5889999999999998752 347888999998775 9999999999999864
Q ss_pred CCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 003227 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAG 666 (837)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~ 666 (837)
.+.++.|..++.++++.++..|+.+|..+.. ..+++.|..++.+ +++.+|..|..
T Consensus 137 ------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~ 191 (201)
T 3ltj_A 137 ------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVN 191 (201)
T ss_dssp ------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHH
Confidence 3678999999999999999999999999843 2357888889988 89999999999
Q ss_pred HHHhcc
Q 003227 667 ALWGLS 672 (837)
Q Consensus 667 ~L~~l~ 672 (837)
+|..+.
T Consensus 192 aL~~l~ 197 (201)
T 3ltj_A 192 YLETHK 197 (201)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 998864
No 67
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.32 E-value=1.2e-12 Score=119.85 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhh---CCCccEEEecCCCCCChHHh---h
Q 003227 151 EALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKL---CPNLTDIGFLDCLNVDEVAL---G 224 (837)
Q Consensus 151 ~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~l---~ 224 (837)
.+|++|+++ +|. +++.++..+ .+|++|++|+|++|..|||.++..++.. |++|++|+|++|..+||.++ .
T Consensus 61 ~~L~~LDLs--~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDAT--DSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEE--SCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCc--CCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 357777775 464 777777766 3577777777777777777777777752 56777777777777777664 4
Q ss_pred CCCCCCEeeccCCCCCCHHHH--HHHHhcCCCcc
Q 003227 225 NVLSVRFLSVAGTSNMKWGVV--SQVWHKLPKLV 256 (837)
Q Consensus 225 ~l~~L~~L~ls~~~~i~~~~l--~~~~~~~~~L~ 256 (837)
.|++|++|++++|+.++|.++ ..+-..+|+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 667777777777777777664 34445566654
No 68
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.31 E-value=3.3e-11 Score=137.14 Aligned_cols=333 Identities=15% Similarity=0.066 Sum_probs=229.5
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-Ch
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (837)
+..+.+-|.++++.++..|..+|+++... +... ..++.+.+++.++++.+|..|+.++.++.. ++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~~---------~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p 153 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRVD---------KITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA 153 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCSG---------GGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCChH---------HHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh
Confidence 46777888899999999999999986521 1122 235689999999999999999999999987 44
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCcc-chHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
+.- .+.+.++.+.++|.++++.++..|+.+|..++.... ....-...+.+..|+..+.. .++..+...+.++.
T Consensus 154 ~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~---~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 154 QMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE---CTEWGQIFILDCLS 227 (591)
T ss_dssp CCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred hhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC---CCchHHHHHHHHHH
Confidence 422 223457899999999999999999999999997542 21000112235666776643 67778888888888
Q ss_pred HhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHH
Q 003227 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQ 618 (837)
Q Consensus 539 ~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~ 618 (837)
.++..++. . ....++.+..++++.+ +.++..|++++..+...-..+++.... .-..+.+.|+.++. +++.+|.
T Consensus 228 ~l~~~~~~--~--~~~~l~~l~~~l~~~~-~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~ 300 (591)
T 2vgl_B 228 NYNPKDDR--E--AQSICERVTPRLSHAN-SAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQY 300 (591)
T ss_dssp TSCCCSHH--H--HHHHHHHHTTCSCSST-THHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHH
T ss_pred HhCCCChH--H--HHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHH
Confidence 77743221 1 1235677777777765 899999999999987421001211111 12355677776664 7899999
Q ss_pred HHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCC
Q 003227 619 EAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEA 698 (837)
Q Consensus 619 ~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~ 698 (837)
.|+.+|..+....+. ++.. .+..+.... +.+..+|..|+.+|.+++...... ..++.|...+.+.+
T Consensus 301 ~aL~~l~~i~~~~p~---~~~~-~~~~~~~~~----~d~~~Ir~~al~~L~~l~~~~nv~------~iv~~L~~~l~~~d 366 (591)
T 2vgl_B 301 VALRNINLIVQKRPE---ILKQ-EIKVFFVKY----NDPIYVKLEKLDIMIRLASQANIA------QVLAELKEYATEVD 366 (591)
T ss_dssp HHHHHHHHHHHHCCS---TTTT-CTTTTSCCT----TSCHHHHHHHHHHHHHTCCSSTHH------HHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhChH---HHHH-HHHhheecc----CChHHHHHHHHHHHHHHCChhhHH------HHHHHHHHHHhcCC
Confidence 999999988753211 0010 112221111 245999999999999988544221 24666778888889
Q ss_pred HHHHHHHHHHHHHHcCC-cccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 699 EDVHETAAGALWNLAFN-PGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 699 ~~v~~~a~~~L~~l~~~-~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
.+++..+++++.+++.. +... ...++.|++++.+.. +.++..+..++..+....++
T Consensus 367 ~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~-~~v~~e~i~~l~~ii~~~p~ 423 (591)
T 2vgl_B 367 VDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKV-NYVVQEAIVVIRDIFRKYPN 423 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHCcc
Confidence 99999999999999873 3222 345789999998775 77888888889888665443
No 69
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.21 E-value=1.4e-09 Score=124.27 Aligned_cols=325 Identities=11% Similarity=0.098 Sum_probs=223.6
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 458 (837)
..++.+.+++.+.++.++..|+.++.++...+.+. + .+.++.+..+|.+.|+.++..|+.+|..++..
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~-----------v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL-----------M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG-----------G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH-----------H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 34688899999999999999999999988654432 1 25677888899999999999999999999984
Q ss_pred -hHHHHHHHHcCCHHHHHHHHhc---------------CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh
Q 003227 459 -AKVAKAVAEEGGINILAVLARS---------------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW 522 (837)
Q Consensus 459 -~~~~~~i~~~g~i~~L~~lL~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~ 522 (837)
++....+. ..++.++++|.. .++-.+...+.+|..++..+.. . .....+.|..++...
T Consensus 210 ~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~---~-~~~~~~~L~~l~~~~ 283 (618)
T 1w63_A 210 SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD---S-SEAMNDILAQVATNT 283 (618)
T ss_dssp HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH---H-HHTTHHHHHHHHHTS
T ss_pred ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHHHHhcc
Confidence 44333332 458888888764 4788888999999998865311 0 122455566666421
Q ss_pred ---CCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhcc
Q 003227 523 ---SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599 (837)
Q Consensus 523 ---~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 599 (837)
...+..+...|+.++..+..++. +.. .+++.|..++.+.+ +.++..|+.+|..++.. .+ ..+ .
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~~~----l~~-~a~~~L~~~L~~~d-~~vr~~aL~~L~~i~~~---~p---~~~--~ 349 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSESG----LRV-LAINILGRFLLNND-KNIRYVALTSLLKTVQT---DH---NAV--Q 349 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCCHH----HHH-HHHHHHHHHHTCSS-TTTHHHHHHHHHHHHHH---HH---HHH--G
T ss_pred ccccchHHHHHHHHHHHHHhcCCCHH----HHH-HHHHHHHHHHhCCC-CchHHHHHHHHHHHHhh---CH---HHH--H
Confidence 11245788889999988754322 222 46788888888765 89999999999999873 11 111 2
Q ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccch
Q 003227 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANC 678 (837)
Q Consensus 600 ~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~ 678 (837)
.....++.++.+++..++..|+.+|..++...... .+ ++.|...+.+ .+.+++..++.+++.++.. +...
T Consensus 350 ~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~-~i-----v~eL~~~l~~---~d~e~r~~~v~~I~~la~k~~~~~ 420 (618)
T 1w63_A 350 RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIR-GM-----MKELLYFLDS---CEPEFKADCASGIFLAAEKYAPSK 420 (618)
T ss_dssp GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTH-HH-----HHHHHHHHHH---CCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHH-HH-----HHHHHHHHHh---CCHHHHHHHHHHHHHHHHHhCccH
Confidence 45678889999999999999999999998864432 22 4778888887 8899999999999999864 2221
Q ss_pred hhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhc--CCcHHHHHHHHHHHHHhh
Q 003227 679 IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSS--SGSKMARFMAALALAYMF 755 (837)
Q Consensus 679 ~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~--~~~~~~~~~a~~aL~~l~ 755 (837)
. ..++.++++++.....++..++..+..+.. +|+.+.. ++..|++.+.+ .+.+.+ ..++|.|+..+
T Consensus 421 ~-----~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~-----~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~ 489 (618)
T 1w63_A 421 R-----WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY-----TVQRLYKAILGDYSQQPLV-QVAAWCIGEYG 489 (618)
T ss_dssp H-----HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-----HHHHHHHHHHHCCSCSHHH-HHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-----HHHHHHHHHhcccccHHHH-HHHHHHHhhhH
Confidence 1 135667777766555555555555555543 4444322 23456666654 222333 35677777665
No 70
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.18 E-value=1.6e-09 Score=119.95 Aligned_cols=312 Identities=13% Similarity=0.006 Sum_probs=195.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHhhccC--ccchHHHH
Q 003227 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSVG--EEHKGAIA 507 (837)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~--~~~~~~l~ 507 (837)
.|+..|.++++.+ ..++.++..++....... .-.+.++.|++.+.++ ++.+++.|+.+|..++.. ++.-....
T Consensus 94 ~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 170 (462)
T 1ibr_B 94 YVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS 170 (462)
T ss_dssp HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH
T ss_pred HHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH
Confidence 3444454544444 555555555543110000 0012378888888888 899999999999999853 21111111
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-c-hHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-C-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~-~-~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
...++.++..+.. ...++.++..|+.++.++...-+ . .......-.++.+...+.+. +++++..++.++..++..
T Consensus 171 -~~ll~~l~~~l~~-~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 171 -NEILTAIIQGMRK-EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp -HHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHH
Confidence 1246667777753 11178999999999998764211 0 00001111355555555554 589999999999999875
Q ss_pred CCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHH------------------HHH---cCCHH
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREA------------------IAA---AGGVE 644 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~------------------l~~---~g~i~ 644 (837)
. +.........++++.++..+++.+++++..|+..+..++........ +.+ ...++
T Consensus 248 ~---~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 248 Y---YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp C---GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 2 11111111126788888888889999999999988887654211000 111 12355
Q ss_pred HHHHHHhhc----CCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcc-c-
Q 003227 645 ALVVLAQSC----SNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG-N- 718 (837)
Q Consensus 645 ~L~~ll~~~----~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~- 718 (837)
.++..+... .+.++.+|..|+.+|..++..-. . .+. ...++.+...+.+.+..++..|+.++..++.... .
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~-~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~ 401 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D-DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T-THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H-HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH
Confidence 555555431 12456799999999999886422 1 111 2356667778888999999999999999997432 1
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 719 ALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 719 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
-...+ ...++.++..+.+++ +.+|..|+++|+.+...
T Consensus 402 ~~~~l-~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 402 LKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TCTTT-TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHh
Confidence 11111 457889999998875 89999999999999864
No 71
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.16 E-value=6.4e-09 Score=118.65 Aligned_cols=323 Identities=11% Similarity=0.034 Sum_probs=234.9
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChH
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (837)
....++++.+.+.+.+.-+..++..++..+.+. . + -++..+.+-|+++|+.++..|+++|+++.. ++
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~-------~--~---l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~ 138 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDV-------H--L---LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE 138 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH-------H--H---HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH-------H--H---HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH
Confidence 356778888999999988888888877543321 1 1 235577888889999999999999999985 33
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003227 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (837)
..+ ..++.+.+++++.++.++..|+.++.++.. +++..+ +.++.+..++ .+.++.++..|+.+|..
T Consensus 139 ~~~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL---~D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 139 MCR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL---NEKNHGVLHTSVVLLTE 205 (618)
T ss_dssp HHH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST---TCCCHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh---CCCCHhHHHHHHHHHHH
Confidence 222 247788899999999999999999999985 343322 4566677777 45889999999999999
Q ss_pred hhcCC-CchHHHHhcCcHHHHHHHHhc--------------CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHH
Q 003227 540 LAADD-KCSMEVALAGGVHALVMLARS--------------CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (837)
Q Consensus 540 l~~~~-~~~~~l~~~g~i~~L~~ll~~--------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~ 604 (837)
++... +....+ ...++.++..|.+ ..++..+...+.+|..++.. .+.. .....+.
T Consensus 206 i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~---~~~~-----~~~~~~~ 275 (618)
T 1w63_A 206 MCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN---DDDS-----SEAMNDI 275 (618)
T ss_dssp HCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT---CHHH-----HHTTHHH
T ss_pred HHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC---CHHH-----HHHHHHH
Confidence 98642 221222 2578888887764 23588889999999998864 1211 1234455
Q ss_pred HHHHcC------CCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccch
Q 003227 605 LVQLTR------SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANC 678 (837)
Q Consensus 605 L~~lL~------~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~ 678 (837)
|..++. +.+..+...|+.++..+...+..+. .++..|..++.+ .++.+|..|+.+|..++....
T Consensus 276 L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~---~d~~vr~~aL~~L~~i~~~~p-- 345 (618)
T 1w63_A 276 LAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLN---NDKNIRYVALTSLLKTVQTDH-- 345 (618)
T ss_dssp HHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTC---SSTTTHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhC---CCCchHHHHHHHHHHHHhhCH--
Confidence 555542 2355789999999999866543221 357888888886 788999999999999886421
Q ss_pred hhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCC
Q 003227 679 IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGR 758 (837)
Q Consensus 679 ~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~ 758 (837)
.+.. .....++..+.+++..++..|+.+|..++.... -..+ +..|+..+.+.+ +.++..+..+++.++...
T Consensus 346 -~~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v~~i-----v~eL~~~l~~~d-~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 346 -NAVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-IRGM-----MKELLYFLDSCE-PEFKADCASGIFLAAEKY 416 (618)
T ss_dssp -HHHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-THHH-----HHHHHHHHHHCC-HHHHHHHHHHHHHHHHSS
T ss_pred -HHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc-HHHH-----HHHHHHHHHhCC-HHHHHHHHHHHHHHHHHh
Confidence 1221 246678889999999999999999999987543 2333 457888887764 889999999999998754
No 72
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.07 E-value=4.9e-09 Score=126.07 Aligned_cols=353 Identities=10% Similarity=0.026 Sum_probs=227.2
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC--
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-- 458 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-- 458 (837)
++.+.+.+.+.+..++..|+.+++.++..... ....... ...++.|+..++++++.+|..++++|+.++..
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~------~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDK------VQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH------HHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH------HHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 46777777888899999999999998854321 1111112 24678899999999999999999999988752
Q ss_pred hHH--HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC------ccchHHHHhhCCHHHHHHHHHhhCCCCHHHH
Q 003227 459 AKV--AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG------EEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (837)
Q Consensus 459 ~~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~------~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~ 530 (837)
++. ...+ ...++.+++.++++ +.++..|+++|.+++.. +.....+ ...++.|+..+.. .+.++.++
T Consensus 444 ~~~~~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~-~d~~~~vr 517 (861)
T 2bpt_A 444 ESIDPQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANR-IDNEFNAR 517 (861)
T ss_dssp GGSCTTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTC-SCCGGGHH
T ss_pred hhcCCHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhC-cCcchHHH
Confidence 110 0000 11367777888765 89999999999988753 1122222 1246667777753 23336799
Q ss_pred HHHHHHHHHhhcCCC-chHHHHhcCcHHHHHHHHhcC--------------CCHHHHHHHHHHHHHHhcCCCCCCcccch
Q 003227 531 ERAAGALANLAADDK-CSMEVALAGGVHALVMLARSC--------------KFEGVQEQAARALANLAAHGDSNSNNSAV 595 (837)
Q Consensus 531 ~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~~--------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 595 (837)
..++.++..+..... ...... ...++.++..+... ....++..++.+|.+++..- ......
T Consensus 518 ~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~ 593 (861)
T 2bpt_A 518 ASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS---PSSVEP 593 (861)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC---GGGTGG
T ss_pred HHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHh---hhhhHH
Confidence 999999999987322 222221 13566677666531 12456778999999988642 111111
Q ss_pred hhccchHHHHHHHcCCCCH-HHHHHHHHHHHhhcCChh--hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 596 GQEAGALEALVQLTRSPHE-GVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 596 ~~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~~Ls~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
.-...++.++..+++.+. .+++.++.++..++.... ....+- ..++.+...+.+ .++.++..|+.++..++
T Consensus 594 -~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~---~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 594 -VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQ---VDSPVSITAVGFIADIS 667 (861)
T ss_dssp -GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHC---TTSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhcc---ccHHHHHHHHHHHHHHH
Confidence 123567778888887766 899999999988876422 222222 257788888865 77889999999999887
Q ss_pred cCccchhhhhccCChHHHHHHhccCC--HHHHHHHHHHHHHHcCCc-ccHHHHHHcCCHHHHHHHHhcCC----------
Q 003227 673 VSEANCIAIGREGGVAPLIALARSEA--EDVHETAAGALWNLAFNP-GNALRIVEEGGVPALVHLCSSSG---------- 739 (837)
Q Consensus 673 ~~~~~~~~l~~~~~i~~L~~lL~s~~--~~v~~~a~~~L~~l~~~~-~~~~~i~~~~~i~~L~~ll~~~~---------- 739 (837)
..-...-.-.-...++.++..+.+.+ .+++..++.++..++..- +.-...+ ...++.++..+....
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l-~~~l~~l~~~~~~~~~~~d~d~~~~ 746 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL-NDIMALCVAAQNTKPENGTLEALDY 746 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCCCSSSSHHHHHH
T ss_pred HHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhcCCCCCChHHHHH
Confidence 53211100011235667777787654 889999999999988632 2111111 245777777776421
Q ss_pred cHHHHHHHHHHHHHhhCC
Q 003227 740 SKMARFMAALALAYMFDG 757 (837)
Q Consensus 740 ~~~~~~~a~~aL~~l~~~ 757 (837)
...+|..+..++..+...
T Consensus 747 ~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 747 QIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 134778888888877643
No 73
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.07 E-value=5.2e-11 Score=114.72 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=93.0
Q ss_pred CCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCC
Q 003227 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L 181 (837)
+++|++|+++++...+...-..+++|++|++++|. +++.. ....+++|++|+++ ++ .+++.....+ ..+++|
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~~---~l~~l~~L~~L~l~--~n-~l~~~~~~~l-~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH-ATNYN---PISGLSNLERLRIM--GK-DVTSDKIPNL-SGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCCG---GGTTCTTCCEEEEE--CT-TCBGGGSCCC-TTCTTC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCC-CCcch---hhhcCCCCCEEEeE--CC-ccCcccChhh-cCCCCC
Confidence 36788888888765531222367788888888874 43321 23457788888885 23 4443333333 247788
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh-HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEe
Q 003227 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (837)
Q Consensus 182 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l 260 (837)
++|+++++ .+++.....+. .+++|++|++++|..+++ ..+..+++|++|++++|. +++.. ....+++|++|++
T Consensus 115 ~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l 188 (197)
T 4ezg_A 115 TLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYA 188 (197)
T ss_dssp CEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEE
T ss_pred CEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEe
Confidence 88888877 56665555454 467888888888753444 456777788888887763 43321 2355777777777
Q ss_pred ccCCCCH
Q 003227 261 SRTDVGP 267 (837)
Q Consensus 261 ~~~~i~~ 267 (837)
++|.+++
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 7776653
No 74
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.06 E-value=2.5e-10 Score=121.16 Aligned_cols=191 Identities=17% Similarity=0.145 Sum_probs=92.1
Q ss_pred ccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHH-HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEe
Q 003227 80 WSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (837)
Q Consensus 80 ~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l 158 (837)
.+.++++...+..- .. ...+++|+.|++++|....... ...+++|++|++++|. ++.... ...+++|++|++
T Consensus 112 L~~L~l~~n~i~~~--~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L~l 184 (347)
T 4fmz_A 112 LRELYLNEDNISDI--SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSLSL 184 (347)
T ss_dssp CSEEECTTSCCCCC--GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEEC
T ss_pred CCEEECcCCcccCc--hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh---hccCCCCCEEEc
Confidence 35566665443321 11 3456778888888774432221 2256777777777765 222111 345677777777
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCC
Q 003227 159 GPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTS 238 (837)
Q Consensus 159 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~ 238 (837)
+ +| .+.+... ...+++|+.|+++++ .+++... ...+++|++|++++|.......+..+++|++|++++|.
T Consensus 185 ~--~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 185 N--YN-QIEDISP---LASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ 254 (347)
T ss_dssp T--TS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred c--CC-ccccccc---ccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc
Confidence 4 23 3322111 234556666666555 3332111 23345566666655532222335555555555555542
Q ss_pred CCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 239 NMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 239 ~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
+++. .....+++|+.|++++|.+++- .....+++|+.|++++|. +++..
T Consensus 255 -l~~~---~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 255 -ISDI---NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp -CCCC---GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCGGG
T ss_pred -cCCC---hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCc-CCCcC
Confidence 2221 1123455555555555544332 112235555555555554 44333
No 75
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.05 E-value=2.4e-10 Score=121.30 Aligned_cols=177 Identities=17% Similarity=0.131 Sum_probs=125.9
Q ss_pred HHhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC
Q 003227 99 ASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (837)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~ 178 (837)
...+++|+.|++++|..........+++|++|++++|. +++.. . ...+++|+.|+++ ++ .+++... ...+
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~--~n-~l~~~~~---~~~~ 220 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-IEDIS--P-LASLTSLHYFTAY--VN-QITDITP---VANM 220 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC-CCCCG--G-GGGCTTCCEEECC--SS-CCCCCGG---GGGC
T ss_pred hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc-ccccc--c-ccCCCccceeecc--cC-CCCCCch---hhcC
Confidence 34668899999999866543334478999999999986 43221 1 4568899999996 23 4433221 4568
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEE
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L 258 (837)
++|++|++++| .+++... ...+++|++|++++|...+...+..+++|++|++++| .+++. .....+++|+.|
T Consensus 221 ~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L 292 (347)
T 4fmz_A 221 TRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSL 292 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEE
T ss_pred CcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEE
Confidence 89999999988 4544221 4467999999999984433366788899999999987 34432 224678899999
Q ss_pred EeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 259 ~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
++++|.++......+. .+++|+.|++++|. +++..
T Consensus 293 ~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIG-GLTNLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp ECCSSCCCGGGHHHHH-TCTTCSEEECCSSS-CCCCG
T ss_pred ECcCCcCCCcChhHhh-ccccCCEEEccCCc-ccccc
Confidence 9999988765554443 48899999999998 66554
No 76
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.04 E-value=1.6e-08 Score=121.54 Aligned_cols=357 Identities=14% Similarity=0.049 Sum_probs=231.5
Q ss_pred HHHHHHhhhcC-CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC--ChhHHHHHHHHHHHhcc
Q 003227 381 AGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSV 457 (837)
Q Consensus 381 i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~ 457 (837)
++.|++.+.++ ++.++..|..++..++..-........... ...++.++..+.++ ++.+|..|+.++..+..
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS-----NNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH-----HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH-----HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 58889999887 899999999999988854322110001111 22456777788876 89999999999998753
Q ss_pred -ChHH-HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-c-cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHH
Q 003227 458 -NAKV-AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-E-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (837)
Q Consensus 458 -~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a 533 (837)
-.+. .........++.+.+.+.+++..++..++.+|..++.. + .....+. ...++.+...+ .+.++.++..+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~---~~~~~~vr~~a 286 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATM---KSPNDKVASMT 286 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHT---TCSSHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---cCCcHHHHHHH
Confidence 1111 00000011356666777888999999999999999863 2 2222222 13445555555 45778999999
Q ss_pred HHHHHHhhcCCC------------------chHHHHhcCcHHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCCCCC
Q 003227 534 AGALANLAADDK------------------CSMEVALAGGVHALVMLARSC------KFEGVQEQAARALANLAAHGDSN 589 (837)
Q Consensus 534 ~~~L~~l~~~~~------------------~~~~l~~~g~i~~L~~ll~~~------~~~~~~~~a~~~L~~l~~~~~~~ 589 (837)
+..+..++.... ...... ...++.++..+... ++..++..+..+|..++...
T Consensus 287 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~--- 362 (861)
T 2bpt_A 287 VEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC--- 362 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc---
Confidence 999988875321 001111 34567777777642 22468889999999988631
Q ss_pred CcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChh--hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q 003227 590 SNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGA 667 (837)
Q Consensus 590 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~ 667 (837)
. ..+ -...++.+...+.+.+..+++.|+.++..++.... .-..... ..++.++..+.+ +++.+|..|+++
T Consensus 363 ~---~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d---~~~~vr~~a~~~ 434 (861)
T 2bpt_A 363 G---NHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMND---QSLQVKETTAWC 434 (861)
T ss_dssp G---GGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGC---SCHHHHHHHHHH
T ss_pred c---HhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCC---CcHHHHHHHHHH
Confidence 1 111 13456777777888899999999999999997632 1111112 356777777776 899999999999
Q ss_pred HHhcccC-ccc-hhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCc-----ccHHHHHHcCCHHHHHHHHhcCC-
Q 003227 668 LWGLSVS-EAN-CIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNP-----GNALRIVEEGGVPALVHLCSSSG- 739 (837)
Q Consensus 668 L~~l~~~-~~~-~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~-----~~~~~i~~~~~i~~L~~ll~~~~- 739 (837)
+..++.. ... ...-.-...++.++..+++. +.++..|++++.+++..- ..-.... ...++.|+..+.+.+
T Consensus 435 l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~ 512 (861)
T 2bpt_A 435 IGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDN 512 (861)
T ss_dssp HHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCC
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCc
Confidence 9998853 110 00001123567788888775 999999999999987521 1111111 234677888887533
Q ss_pred cHHHHHHHHHHHHHhhCCCCc
Q 003227 740 SKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 740 ~~~~~~~a~~aL~~l~~~~~~ 760 (837)
++.+|..+..+++.+....+.
T Consensus 513 ~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 513 EFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHCCG
T ss_pred chHHHHHHHHHHHHHHHHcch
Confidence 367999999999998765543
No 77
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.01 E-value=1.4e-08 Score=122.25 Aligned_cols=352 Identities=13% Similarity=0.004 Sum_probs=229.7
Q ss_pred HHHHHHhhhcC--CHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC--ChhHHHHHHHHHHHhc
Q 003227 381 AGLLLSLMQST--QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLS 456 (837)
Q Consensus 381 i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~ 456 (837)
++.+++.+.++ ++.++..|..+|..++...... .. .-.-...++.+...+.++ +..+|..|+.++..+.
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~------~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE------QL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH------HH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh------hH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 58899999888 8999999999999887532110 00 001123456777778776 6899999999999977
Q ss_pred cC-hHH-HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHH
Q 003227 457 VN-AKV-AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (837)
Q Consensus 457 ~~-~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a 533 (837)
.. +.. .........++.+.+.+.+.+..++..++.+|..+... +..-........++.++..+ .+.++.++..+
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~v~~~a 279 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM---KSDIDEVALQG 279 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH---TCSSHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHH
Confidence 52 211 11111111356666777778899999999999999863 22212222224566666666 35778899999
Q ss_pred HHHHHHhhcCCC-------------------chHHH--HhcCcHHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCC
Q 003227 534 AGALANLAADDK-------------------CSMEV--ALAGGVHALVMLARSC------KFEGVQEQAARALANLAAHG 586 (837)
Q Consensus 534 ~~~L~~l~~~~~-------------------~~~~l--~~~g~i~~L~~ll~~~------~~~~~~~~a~~~L~~l~~~~ 586 (837)
+..+..++.... ....+ .-...++.++..+... ++..++..|..+|..++...
T Consensus 280 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~ 359 (876)
T 1qgr_A 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC
Confidence 988888875310 00000 0023466677776531 23578889999999988641
Q ss_pred CCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChh--hHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH
Q 003227 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVVLAQSCSNASPGLQERA 664 (837)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A 664 (837)
. ..+ -..+++.+...+.++++.+|+.|+.++..++.... ...... .+.++.++..+.+ +++.+|..|
T Consensus 360 ---~---~~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d---~~~~vr~~a 428 (876)
T 1qgr_A 360 ---E---DDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD---PSVVVRDTA 428 (876)
T ss_dssp ---G---GGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC---SSHHHHHHH
T ss_pred ---c---Hhh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC---CCHHHHHHH
Confidence 1 111 13566777788888999999999999999998632 211222 2368888888877 889999999
Q ss_pred HHHHHhcccC-ccc---hhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcc---------------cHHHHHHc
Q 003227 665 AGALWGLSVS-EAN---CIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG---------------NALRIVEE 725 (837)
Q Consensus 665 ~~~L~~l~~~-~~~---~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~---------------~~~~i~~~ 725 (837)
+++|.+++.. +.. ... -...++.++..+.+. +.++..|+++|.+++.... .-.... .
T Consensus 429 ~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 504 (876)
T 1qgr_A 429 AWTVGRICELLPEAAINDVY--LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF-E 504 (876)
T ss_dssp HHHHHHHHHHCGGGTSSTTT--HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH-H
T ss_pred HHHHHHHHHhCchhcccHHH--HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH-H
Confidence 9999999864 211 111 123567777888774 8999999999999985311 000111 2
Q ss_pred CCHHHHHHHHhcCC--cHHHHHHHHHHHHHhhCC
Q 003227 726 GGVPALVHLCSSSG--SKMARFMAALALAYMFDG 757 (837)
Q Consensus 726 ~~i~~L~~ll~~~~--~~~~~~~a~~aL~~l~~~ 757 (837)
..++.|+..+...+ ...++..+..+++.+...
T Consensus 505 ~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN 538 (876)
T ss_dssp HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHH
Confidence 35667777776542 346788888888887654
No 78
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.00 E-value=2.8e-10 Score=82.11 Aligned_cols=48 Identities=35% Similarity=0.844 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccccC
Q 003227 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84 (837)
Q Consensus 37 ~~~~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~ 84 (837)
...|..||+|++.+||+||+..|+.+++.|||+|+.+..++.+|+.+|
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 456899999999999999999999999999999999999999999875
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.00 E-value=2.4e-10 Score=117.51 Aligned_cols=172 Identities=19% Similarity=0.133 Sum_probs=122.8
Q ss_pred CCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCC
Q 003227 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L 181 (837)
+++|+.|++++|.......-..+++|++|++++|. +++.. . ...+++|+.|+++ ++ .++. +.. ...+++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~-l~~~~--~-l~~l~~L~~L~l~--~n-~l~~--~~~-l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIK--P-LANLKNLGWLFLD--EN-KVKD--LSS-LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECC--SS-CCCC--GGG-GTTCTTC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc-cCCCc--c-cccCCCCCEEECC--CC-cCCC--Chh-hccCCCC
Confidence 47799999998865432222368999999999986 44321 2 5678999999996 23 4544 222 3568999
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEec
Q 003227 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (837)
Q Consensus 182 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~ 261 (837)
++|+++++ .+++- ..+ ..+++|++|++++|...+-..+..+++|++|++++|. +++... ...+++|+.|+++
T Consensus 115 ~~L~L~~n-~i~~~--~~l-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 115 KSLSLEHN-GISDI--NGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLS 186 (291)
T ss_dssp CEEECTTS-CCCCC--GGG-GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECC
T ss_pred CEEECCCC-cCCCC--hhh-cCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCc-cccchh---hcCCCccCEEECC
Confidence 99999998 55542 223 3579999999999854444678889999999999883 443221 5678999999999
Q ss_pred cCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 262 RTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 262 ~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
+|.+++- .. ...+++|+.|++++|+ +++.+
T Consensus 187 ~N~i~~l--~~-l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 187 KNHISDL--RA-LAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp SSCCCBC--GG-GTTCTTCSEEEEEEEE-EECCC
T ss_pred CCcCCCC--hh-hccCCCCCEEECcCCc-ccCCc
Confidence 9887652 22 3468999999999987 55544
No 80
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.00 E-value=2.8e-09 Score=118.02 Aligned_cols=308 Identities=12% Similarity=-0.010 Sum_probs=203.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC--ChhHHHHHHHHHHHhccC-
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVN- 458 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~- 458 (837)
..++..|.+.++.+ ..++.++..++..+... .. -.+.++.|+..+.++ ++.++..|+.+|..++.+
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-----~~-----w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPV-----NQ-----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-----TC-----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-----cc-----cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhC
Confidence 56777887777777 78888888877543211 00 135688999999998 999999999999998862
Q ss_pred -hHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHhhccCc-cc-hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHH
Q 003227 459 -AKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSVGE-EH-KGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (837)
Q Consensus 459 -~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~-~~-~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a 533 (837)
++.-..... ..++.+++.++++ ++.++..|+.++.++...- +. .......-.++.+...+ .+.+++++..+
T Consensus 162 ~~~~~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~vr~~~ 237 (462)
T 1ibr_B 162 DPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT---QCPDTRVRVAA 237 (462)
T ss_dssp CGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT---TCSSHHHHHHH
T ss_pred CchhhHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc---CCCCHHHHHHH
Confidence 221111111 1467788888887 7999999999999876421 00 00001111244444444 45788999999
Q ss_pred HHHHHHhhcCCC--chHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC--------C----CCC--cccchhh
Q 003227 534 AGALANLAADDK--CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG--------D----SNS--NNSAVGQ 597 (837)
Q Consensus 534 ~~~L~~l~~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--------~----~~~--~~~~~~~ 597 (837)
+.+|..++.... ....+ ..+.++.++..+.+.+ ++++..++..+..++... + ..+ .....+.
T Consensus 238 ~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~-~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (462)
T 1ibr_B 238 LQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDI-DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315 (462)
T ss_dssp HHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHH
Confidence 999999986321 11111 1156777777777654 889999999998887531 0 000 0001111
Q ss_pred c---cchHHHHHHHcCCC-------CHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q 003227 598 E---AGALEALVQLTRSP-------HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGA 667 (837)
Q Consensus 598 ~---~~~i~~L~~lL~~~-------~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~ 667 (837)
+ ...++.++..+... +..++..|+.+|..++..-+. .+. ...++.+...+.+ .++.+|..|+.+
T Consensus 316 ~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~---~~~~~r~aal~~ 389 (462)
T 1ibr_B 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKN---PDWRYRDAAVMA 389 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTC---SSHHHHHHHHHH
T ss_pred HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcC---CChHHHHHHHHH
Confidence 1 34667777777542 346899999999888764221 111 1245666666665 899999999999
Q ss_pred HHhcccCcc---chhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 668 LWGLSVSEA---NCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 668 L~~l~~~~~---~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
++.++.... ....+ ...++.++..+.++++.||..|+++|.+++.
T Consensus 390 l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 390 FGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999997532 11111 4578889999999999999999999999986
No 81
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=6.8e-10 Score=116.65 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=88.5
Q ss_pred HHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh-hCCCccEEEecCCCC--CC
Q 003227 143 LSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK-LCPNLTDIGFLDCLN--VD 219 (837)
Q Consensus 143 l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~-~~~~L~~L~l~~~~~--~~ 219 (837)
+..+...+|+|++|+|++ +..+.. ..+ .+++|++|+|..| .++++++..++. .+|+|++|+|+.+.. ..
T Consensus 164 L~~ll~~~P~L~~L~L~g--~~~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKG--TNNLSI---GKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp CHHHHHTCTTCCEEEEEC--CBTCBC---CSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred HHHHHhcCCCCcEEEEeC--CCCcee---ccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEecccccccc
Confidence 344556667777777742 321111 111 2567777777766 577777766653 467777777642111 11
Q ss_pred h---H----Hh--hCCCCCCEeeccCCCCCCHHHHHHHHh--cCCCccEEEeccCCCCHHHHHHHHh---cCcccccccc
Q 003227 220 E---V----AL--GNVLSVRFLSVAGTSNMKWGVVSQVWH--KLPKLVGLDVSRTDVGPITISRLLT---SSKSLKVLCA 285 (837)
Q Consensus 220 ~---~----~l--~~l~~L~~L~ls~~~~i~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~l~l 285 (837)
+ . .+ ..+|+|++|++++| .+++.+...+.. .+|+|++|+|+.|.+++.+...+.. .+++|+.|++
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 1 1 11 24677888888765 455555444442 4677888888777787777666654 3577888888
Q ss_pred cccccccchhHHHHH
Q 003227 286 LNCPVLEEENNISAV 300 (837)
Q Consensus 286 ~~c~~i~~~~~~~~~ 300 (837)
++|. |++.++..+.
T Consensus 315 ~~n~-i~d~~~~~l~ 328 (362)
T 2ra8_A 315 KYNY-LSDEMKKELQ 328 (362)
T ss_dssp CSBB-CCHHHHHHHH
T ss_pred CCCc-CCHHHHHHHH
Confidence 7775 7777765554
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.99 E-value=3.3e-10 Score=117.57 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=109.7
Q ss_pred HhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCC
Q 003227 100 SRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (837)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~ 179 (837)
..+++|+.|++++|...+...-..+++|++|++++|. ++.- . ....+++|++|+++ +| .+++. .. ...++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~-l~~~--~-~~~~l~~L~~L~l~--~n-~l~~~--~~-l~~l~ 129 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNV--S-AIAGLQSIKTLDLT--ST-QITDV--TP-LAGLS 129 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-CSCC--G-GGTTCTTCCEEECT--TS-CCCCC--GG-GTTCT
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc-CCCc--h-hhcCCCCCCEEECC--CC-CCCCc--hh-hcCCC
Confidence 4567888888888755432223367788888888876 4332 1 23457788888885 23 34332 12 34578
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEE
Q 003227 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~ 259 (837)
+|++|+++++ .+++.. . ...+++|++|++++|...+-..+..+++|++|++++|. +++.. . ...+++|++|+
T Consensus 130 ~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~ 201 (308)
T 1h6u_A 130 NLQVLYLDLN-QITNIS--P-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-ISDIS--P-LASLPNLIEVH 201 (308)
T ss_dssp TCCEEECCSS-CCCCCG--G-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCG--G-GGGCTTCCEEE
T ss_pred CCCEEECCCC-ccCcCc--c-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCc-cCcCh--h-hcCCCCCCEEE
Confidence 8888888877 444321 1 33568888888888733322447778888888888773 33221 1 45678888888
Q ss_pred eccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 260 l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
+++|.+++.. . ...+++|+.|++++|+ ++...
T Consensus 202 L~~N~l~~~~--~-l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 202 LKNNQISDVS--P-LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CTTSCCCBCG--G-GTTCTTCCEEEEEEEE-EECCC
T ss_pred ccCCccCccc--c-ccCCCCCCEEEccCCe-eecCC
Confidence 8887765332 1 3457888888888877 55433
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.98 E-value=3.5e-10 Score=117.38 Aligned_cols=172 Identities=17% Similarity=0.105 Sum_probs=126.2
Q ss_pred CCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCC
Q 003227 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L 181 (837)
+++|++|+++++.......-..+++|++|++++|. +++-. . ...+++|++|++++ + .++.. .. ...+++|
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~-i~~~~--~-~~~l~~L~~L~L~~--n-~l~~~--~~-~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLA--P-LKNLTKITELELSG--N-PLKNV--SA-IAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCG--G-GTTCCSCCEEECCS--C-CCSCC--GG-GTTCTTC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc-CCCCh--h-HccCCCCCEEEccC--C-cCCCc--hh-hcCCCCC
Confidence 47899999999866542222368999999999986 44322 2 56789999999963 4 34432 22 3458999
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEec
Q 003227 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (837)
Q Consensus 182 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~ 261 (837)
++|+++++ .+++- .. ...+++|++|++++|.......+..+++|++|++++| .+++.. . ...+++|+.|+++
T Consensus 110 ~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 110 KTLDLTST-QITDV--TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLT--P-LANLSKLTTLKAD 181 (308)
T ss_dssp CEEECTTS-CCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECC
T ss_pred CEEECCCC-CCCCc--hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCC-cCCCCh--h-hcCCCCCCEEECC
Confidence 99999998 56542 22 3467999999999995444456889999999999998 444322 1 5678999999999
Q ss_pred cCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 262 RTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 262 ~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
+|.+++-.. ...+++|+.|++++|. +++..
T Consensus 182 ~n~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~ 211 (308)
T 1h6u_A 182 DNKISDISP---LASLPNLIEVHLKNNQ-ISDVS 211 (308)
T ss_dssp SSCCCCCGG---GGGCTTCCEEECTTSC-CCBCG
T ss_pred CCccCcChh---hcCCCCCCEEEccCCc-cCccc
Confidence 987754321 3468999999999997 66654
No 84
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.98 E-value=6e-09 Score=125.57 Aligned_cols=350 Identities=11% Similarity=-0.025 Sum_probs=226.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcC--ChhHHHHHHHHHHHhccC-
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVN- 458 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~- 458 (837)
+.+++.+.++++.+ ..++.++..++...... .. -...++.|+..+.++ ++.++..++.+|..++..
T Consensus 93 ~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~-----~~-----w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (876)
T 1qgr_A 93 NYVLHTLGTETYRP-SSASQCVAGIACAEIPV-----NQ-----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (876)
T ss_dssp HHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGG-----TC-----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcc-----cc-----cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 56778887777777 77888888877542110 00 134578899999998 999999999999998862
Q ss_pred -hHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHhhccC-ccc-hHHHHhhCCHHHHHHHHHhhCCCCHHHHHHH
Q 003227 459 -AKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSVG-EEH-KGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (837)
Q Consensus 459 -~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~-~~~-~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a 533 (837)
++.-... -...++.+.+.+.++ +..++..|+.++..+... ... .........++.+...+ .+.+++++..+
T Consensus 162 ~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~---~~~~~~vr~~a 237 (876)
T 1qgr_A 162 DPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT---QCPDTRVRVAA 237 (876)
T ss_dssp CHHHHGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT---TCSSHHHHHHH
T ss_pred CHhhHHhH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc---CCCCHHHHHHH
Confidence 2210000 011256667777766 689999999999988752 110 00111111345555555 45678999999
Q ss_pred HHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-------------CC--Ccccchh-
Q 003227 534 AGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD-------------SN--SNNSAVG- 596 (837)
Q Consensus 534 ~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-------------~~--~~~~~~~- 596 (837)
+.+|..+... ++.-...+....++.++..+.+.+ +.++..++..+..++.... .. .......
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHH
Confidence 9999999863 322222333367787877776654 8899999999988875310 00 0000111
Q ss_pred -hccchHHHHHHHcCC-------CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 003227 597 -QEAGALEALVQLTRS-------PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGAL 668 (837)
Q Consensus 597 -~~~~~i~~L~~lL~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L 668 (837)
.-...++.++..+.. .+..+|..|..+|..++..... .+.. ..++.+...+.+ .++.+|..|+.++
T Consensus 317 ~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~---~~~~~r~~a~~~l 390 (876)
T 1qgr_A 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKN---PDWRYRDAAVMAF 390 (876)
T ss_dssp HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccC---CChHHHHHHHHHH
Confidence 013556777777753 3457899999999888764221 1111 234455555555 8899999999999
Q ss_pred HhcccCcc--chhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccH---HHHHHcCCHHHHHHHHhcCCcHHH
Q 003227 669 WGLSVSEA--NCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNA---LRIVEEGGVPALVHLCSSSGSKMA 743 (837)
Q Consensus 669 ~~l~~~~~--~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~---~~i~~~~~i~~L~~ll~~~~~~~~ 743 (837)
..++.... .-... -...++.++..+.++++.++..|+++|.+++..-... .... ...++.|+..+.+ + +.+
T Consensus 391 ~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~-~-~~v 466 (876)
T 1qgr_A 391 GCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA-E-PRV 466 (876)
T ss_dssp HHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS-C-HHH
T ss_pred HHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC-C-HHH
Confidence 99987532 11111 1346888999999999999999999999998632110 0111 2356677888765 3 789
Q ss_pred HHHHHHHHHHhhCC
Q 003227 744 RFMAALALAYMFDG 757 (837)
Q Consensus 744 ~~~a~~aL~~l~~~ 757 (837)
+..|+.+|.++...
T Consensus 467 ~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 467 ASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 85
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.95 E-value=8.1e-09 Score=97.74 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCC
Q 003227 141 ATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN 217 (837)
Q Consensus 141 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 217 (837)
+.+..+...+++|++|+|+ +|..+++.++..++. .+++|++|+|+++ .+++++...++..
T Consensus 26 ~~l~~~l~~~~~L~~L~L~--~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~-------------- 88 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLN--NIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEM-------------- 88 (185)
T ss_dssp HHHHHHHTTCTTCCEEECT--TCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHH--------------
T ss_pred HHHHHHHhcCCCCCEEEec--CCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHH--------------
Confidence 3444455555666666663 233555555544432 2455556666555 4555554444322
Q ss_pred CChHHhhCCCCCCEeeccCCCCCCHHHHHHHH---hcCCCccEEEe--ccCCCCHHHHHHHHh---cCcccccccccccc
Q 003227 218 VDEVALGNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDV--SRTDVGPITISRLLT---SSKSLKVLCALNCP 289 (837)
Q Consensus 218 ~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~---~~~~~L~~L~l--~~~~i~~~~l~~l~~---~~~~L~~l~l~~c~ 289 (837)
+...++|++|+|++| .+++.+...+. ..++.|++|+| ++|.+++.+...+.. ..++|+.|++++|.
T Consensus 89 -----L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 89 -----LKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -----HHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -----HHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 122344555555544 45555554444 33455666666 556666666444433 34666777776665
Q ss_pred cccchh
Q 003227 290 VLEEEN 295 (837)
Q Consensus 290 ~i~~~~ 295 (837)
+++.+
T Consensus 163 -i~~~~ 167 (185)
T 1io0_A 163 -QGPRL 167 (185)
T ss_dssp -HHHHH
T ss_pred -CChHH
Confidence 55554
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.91 E-value=5.5e-10 Score=126.21 Aligned_cols=172 Identities=19% Similarity=0.137 Sum_probs=113.8
Q ss_pred CCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCC
Q 003227 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L 181 (837)
+++|+.|+++++..........+++|+.|+|++|. ++... . ...+++|+.|+|+ .| .+.. +.. ...+++|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls--~N-~l~~--l~~-l~~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIK--P-LTNLKNLGWLFLD--EN-KIKD--LSS-LKDLKKL 111 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-CCCCG--G-GGGCTTCCEEECC--SS-CCCC--CTT-STTCTTC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-CCCCh--h-hccCCCCCEEECc--CC-CCCC--Chh-hccCCCC
Confidence 37788888887765432222367888888888876 43311 1 4568888888885 23 4433 112 2457888
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEec
Q 003227 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (837)
Q Consensus 182 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~ 261 (837)
+.|+|+++ .+++ +.. ...+++|+.|+|++|.......+..+++|+.|+|++|. +++... ...+++|+.|+|+
T Consensus 112 ~~L~Ls~N-~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 112 KSLSLEHN-GISD--ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLS 183 (605)
T ss_dssp CEEECTTS-CCCC--CGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECC
T ss_pred CEEEecCC-CCCC--Ccc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCc-CCCchh---hccCCCCCEEECc
Confidence 88888888 4543 222 33578899999988844344667888889999998874 333211 5668889999998
Q ss_pred cCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 262 RTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 262 ~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
+|.+++- .. +..+++|+.|+|++|+ ++...
T Consensus 184 ~N~i~~l--~~-l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 184 KNHISDL--RA-LAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp SSCCCBC--GG-GTTCTTCSEEECCSEE-EECCC
T ss_pred CCCCCCC--hH-HccCCCCCEEEccCCc-CcCCc
Confidence 8877642 22 3458888899988887 54443
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.91 E-value=2.3e-10 Score=110.15 Aligned_cols=151 Identities=18% Similarity=0.204 Sum_probs=111.5
Q ss_pred HcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 003227 122 LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA 201 (837)
Q Consensus 122 ~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~ 201 (837)
..+++|++|++++|. +++ +. -...+++|++|+++ +| .+++.. . ...+++|++|+++++ .+++.....+.
T Consensus 41 ~~l~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~l~--~n-~~~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTD--LT-GIEYAHNIKDLTIN--NI-HATNYN--P-ISGLSNLERLRIMGK-DVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSC-CSC--CT-TGGGCTTCSEEEEE--SC-CCSCCG--G-GTTCTTCCEEEEECT-TCBGGGSCCCT
T ss_pred hhcCCccEEeccCCC-ccC--hH-HHhcCCCCCEEEcc--CC-CCCcch--h-hhcCCCCCEEEeECC-ccCcccChhhc
Confidence 356899999999976 442 12 24678999999996 35 444322 2 345899999999998 67765554444
Q ss_pred hhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCc
Q 003227 202 KLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSK 278 (837)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~ 278 (837)
.+++|++|++++| .+++ ..+..+++|++|++++|..+++.. ....+++|+.|++++|.+++-. ....++
T Consensus 110 -~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~---~l~~l~ 181 (197)
T 4ezg_A 110 -GLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR---GIEDFP 181 (197)
T ss_dssp -TCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT---TGGGCS
T ss_pred -CCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH---HhccCC
Confidence 4799999999999 4554 567899999999999986565542 3567999999999999886532 234689
Q ss_pred cccccccccccccc
Q 003227 279 SLKVLCALNCPVLE 292 (837)
Q Consensus 279 ~L~~l~l~~c~~i~ 292 (837)
+|+.|+++++. |+
T Consensus 182 ~L~~L~l~~N~-i~ 194 (197)
T 4ezg_A 182 KLNQLYAFSQT-IG 194 (197)
T ss_dssp SCCEEEECBC----
T ss_pred CCCEEEeeCcc-cC
Confidence 99999999886 54
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.91 E-value=4.4e-10 Score=117.03 Aligned_cols=176 Identities=19% Similarity=0.106 Sum_probs=98.3
Q ss_pred hCCCcceeeecCcccchH--HHHH----cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCH-HHHH-
Q 003227 101 RCMNLQKLRFRGAESADS--IIHL----QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITS-DAVK- 172 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~--~~~~----~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~- 172 (837)
.+++|++|+++++..... .+.. ..++|++|++++|. ++.... .....+++|++|+++ ++ .+.. .++.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls--~N-~l~~~~~~~~ 193 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC-EQVRVFPALSTLDLS--DN-PELGERGLIS 193 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT-TTCCCCSSCCEEECC--SC-TTCHHHHHHH
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH-HHhccCCCCCEEECC--CC-CcCcchHHHH
Confidence 446677777777654431 1111 23677777777765 322111 112356777778774 23 3322 2222
Q ss_pred HH-HhcCCCCCEEEecCCCCCCH--HHHHHHHhhCCCccEEEecCCCCCCh----HHhhCCCCCCEeeccCCCCCCHHHH
Q 003227 173 AI-ALCCPKLKKLRLSGIRDICG--DAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVV 245 (837)
Q Consensus 173 ~l-~~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~l~~~~~~~~----~~l~~l~~L~~L~ls~~~~i~~~~l 245 (837)
.+ ...+++|++|+++++ .++. .....+...+++|++|++++|. +++ ..+..+++|++|++++|. ++.
T Consensus 194 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--- 267 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQ--- 267 (312)
T ss_dssp HSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSS---
T ss_pred HHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cCh---
Confidence 21 145677888888777 5552 2233444556788888888773 433 223456778888887763 331
Q ss_pred HHHHhc-CCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccc
Q 003227 246 SQVWHK-LPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (837)
Q Consensus 246 ~~~~~~-~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~ 293 (837)
+... .++|++|++++|.++... . ...+++|+.|++++++ +++
T Consensus 268 --ip~~~~~~L~~L~Ls~N~l~~~p--~-~~~l~~L~~L~L~~N~-l~~ 310 (312)
T 1wwl_A 268 --VPKGLPAKLSVLDLSYNRLDRNP--S-PDELPQVGNLSLKGNP-FLD 310 (312)
T ss_dssp --CCSSCCSEEEEEECCSSCCCSCC--C-TTTSCEEEEEECTTCT-TTC
T ss_pred --hhhhccCCceEEECCCCCCCCCh--h-HhhCCCCCEEeccCCC-CCC
Confidence 1111 157788888887665331 1 3357778888887776 554
No 89
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.90 E-value=1.2e-06 Score=100.15 Aligned_cols=303 Identities=15% Similarity=0.088 Sum_probs=211.1
Q ss_pred HhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHh---cCChhHHHHHHHHHHHhccChHHH
Q 003227 386 SLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK---SWREGLQSEAAKAIANLSVNAKVA 462 (837)
Q Consensus 386 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~~l~~~~~~~ 462 (837)
.++....+-.+..|+..|+.+-..+.+ +++..|-..|. ++++.++..|+.+|+-+......
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~g~~~---------------~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~- 428 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHKGNLL---------------EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR- 428 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTSSCTT---------------THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-
T ss_pred hhhhccchHHHHHHHHHhhhhccCchH---------------HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-
Confidence 344333444566777788765544332 24556667776 67889999999999988764321
Q ss_pred HHHHHcCCHHHHHHHHhcCC--------HHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHH
Q 003227 463 KAVAEEGGINILAVLARSMN--------RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (837)
Q Consensus 463 ~~i~~~g~i~~L~~lL~~~~--------~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (837)
+ ++..|...+.+.+ +.++..|+..|+.+...... ...++.|..++.. .+..+++.|+
T Consensus 429 ~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~------eev~e~L~~~L~d---d~~~~~~~Aa 493 (963)
T 4ady_A 429 D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN------IEVYEALKEVLYN---DSATSGEAAA 493 (963)
T ss_dssp H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC------HHHHHHHHHHHHT---CCHHHHHHHH
T ss_pred H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhc---CCHHHHHHHH
Confidence 1 3667777776654 67888898899887643321 1246678888853 5556677888
Q ss_pred HHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcC-CCC
Q 003227 535 GALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR-SPH 613 (837)
Q Consensus 535 ~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~ 613 (837)
.+|+.+-....+.. ++..|+..+.+..+..+++.++.+|..+... +...++.+++.|. +.+
T Consensus 494 lALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g------------~~e~~~~li~~L~~~~d 555 (963)
T 4ady_A 494 LGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG------------RQELADDLITKMLASDE 555 (963)
T ss_dssp HHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT------------CGGGGHHHHHHHHHCSC
T ss_pred HHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC------------ChHHHHHHHHHHHhCCC
Confidence 88887654444332 4567777766666689999999999988764 2355677877765 568
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHH
Q 003227 614 EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIAL 693 (837)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~l 693 (837)
+.+|..++.++..-.....+.. +|+.|+..+.+ +.+..+|..|+.+|+.+....+ ..++.++.+
T Consensus 556 p~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~ 619 (963)
T 4ady_A 556 SLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQL 619 (963)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHH
Confidence 8899988888765443333322 46767777665 4788999999999998765432 246667664
Q ss_pred h-ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCCc
Q 003227 694 A-RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (837)
Q Consensus 694 L-~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~~ 760 (837)
+ ++.++.+|..|+.+|..++....+. .++..|..+.++.+ +.|+..|+.+|+.+..+..+
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d-~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPV-DFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSS-HHHHHHHHHHHHHHSTTCCT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCC-HHHHHHHHHHHHHHhcCCcc
Confidence 4 6789999999999999998654432 34567777887765 88999999999999887554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.89 E-value=2.7e-10 Score=118.61 Aligned_cols=179 Identities=17% Similarity=0.111 Sum_probs=105.4
Q ss_pred hCCCcceeeecCcccchH------HHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHH
Q 003227 101 RCMNLQKLRFRGAESADS------IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAI 174 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 174 (837)
.+++|+.|+++++..... .....+++|++|++++|. ++... ......+++|++|+++ ++.-.+..++...
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls--~N~l~~~~~~~~~ 190 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFS-CEQVRAFPALTSLDLS--DNPGLGERGLMAA 190 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCC-TTSCCCCTTCCEEECC--SCTTCHHHHHHTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhh-HHHhccCCCCCEEECC--CCCCccchhhhHH
Confidence 346777777777765431 111257788888888765 32211 1122356788888885 2422222333221
Q ss_pred --HhcCCCCCEEEecCCCCCC--HHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCC---CCCCEeeccCCCCCCHHH
Q 003227 175 --ALCCPKLKKLRLSGIRDIC--GDAINALAKLCPNLTDIGFLDCLNVDE---VALGNV---LSVRFLSVAGTSNMKWGV 244 (837)
Q Consensus 175 --~~~~~~L~~L~l~~~~~i~--~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l---~~L~~L~ls~~~~i~~~~ 244 (837)
...+++|++|+++++ .++ ......+...+++|++|++++|. +++ ..+..+ ++|++|++++|. ++.
T Consensus 191 ~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~-- 265 (310)
T 4glp_A 191 LCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQ-- 265 (310)
T ss_dssp SCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCS--
T ss_pred HhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCc--
Confidence 135778888888887 565 22233344567888888888874 443 224444 688888888763 331
Q ss_pred HHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccch
Q 003227 245 VSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (837)
Q Consensus 245 l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~ 294 (837)
+.. ...++|+.|++++|.++.-. ....+++|+.|++++++ +++.
T Consensus 266 lp~--~~~~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~L~~N~-l~~~ 309 (310)
T 4glp_A 266 VPK--GLPAKLRVLDLSSNRLNRAP---QPDELPEVDNLTLDGNP-FLVP 309 (310)
T ss_dssp CCS--CCCSCCSCEECCSCCCCSCC---CTTSCCCCSCEECSSTT-TSCC
T ss_pred hhh--hhcCCCCEEECCCCcCCCCc---hhhhCCCccEEECcCCC-CCCC
Confidence 110 12367888888888776311 12357888888888876 6654
No 91
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.88 E-value=5.1e-11 Score=124.85 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=47.4
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCc
Q 003227 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L 255 (837)
+++|++|+++++ .++ .+..-...+++|++|++++|. ++. ..+..+++|++|++++|...... ......+++|
T Consensus 182 l~~L~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L 255 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIR--SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPL 255 (328)
T ss_dssp STTCCEEEEEEE-CCC--CCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCC
T ss_pred CCCCCEEECcCC-CcC--cchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCC
Confidence 455555555554 333 111112234555566555552 222 23455555666666555333211 1112345556
Q ss_pred cEEEeccCCCCHHHHHHHHhcCccccccccccccccc
Q 003227 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (837)
Q Consensus 256 ~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~ 292 (837)
+.|++++|.+....-.. ...+++|+.|++++|..++
T Consensus 256 ~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCC
T ss_pred CEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchh
Confidence 66666554322110001 1235556666666655433
No 92
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.88 E-value=2.3e-08 Score=94.62 Aligned_cols=123 Identities=20% Similarity=0.149 Sum_probs=88.4
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHh---cCCCCCeEEeCCCCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCCHHH
Q 003227 123 QARNLRELSGDYCRKITDATLSVIVA---RHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDA 196 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~ 196 (837)
.+++|++|+|++|..+++.+...+.. .+++|++|+|+ +| .+++.+...++. ..++|++|+|+++ .+++.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls--~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV--GT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT--TS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc--CC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 68999999999984599987777654 56899999996 34 799998877654 3578999999998 799998
Q ss_pred HHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeec--cCCCCCCHHHHHHHH---hcCCCccEEEeccCCCCHHH
Q 003227 197 INALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSV--AGTSNMKWGVVSQVW---HKLPKLVGLDVSRTDVGPIT 269 (837)
Q Consensus 197 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l--s~~~~i~~~~l~~~~---~~~~~L~~L~l~~~~i~~~~ 269 (837)
...++..+ ...++|++|++ ++| .+++.+...+. ..++.|++|++++|.+++.+
T Consensus 110 ~~~l~~~L-------------------~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 110 ILALVEAL-------------------QSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHHGG-------------------GGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHH-------------------HhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 88776442 12234555555 332 45666544433 45677888888888777665
No 93
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.88 E-value=2.6e-07 Score=105.72 Aligned_cols=312 Identities=15% Similarity=0.100 Sum_probs=216.2
Q ss_pred hhHHHHHHhhh---cCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCC--------hhHHHH
Q 003227 379 QGAGLLLSLMQ---STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR--------EGLQSE 447 (837)
Q Consensus 379 ~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--------~~~~~~ 447 (837)
+|+..|-+.|. ++++.++.-|+.+|+.+..+... .++..|...|.+++ +.++..
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------------~~~~lL~~~L~~~~~~~~~~~~~~ir~g 456 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------------DTTDYLKNIIVENSGTSGDEDVDVLLHG 456 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------------HHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------------HHHHHHHHHHcCccccccccccHHHHHH
Confidence 35677777785 56788999999999976654321 14567888887755 678888
Q ss_pred HHHHHHHhcc---ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCC
Q 003227 448 AAKAIANLSV---NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS 524 (837)
Q Consensus 448 a~~~L~~l~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~ 524 (837)
|+-.|+-+.. +++ .++.|..++.+.+..+++.|+.+|+.+-....+.. ++..|+..+.. .
T Consensus 457 AaLGLGla~~GS~~ee---------v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e--~ 519 (963)
T 4ady_A 457 ASLGIGLAAMGSANIE---------VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQE--T 519 (963)
T ss_dssp HHHHHHHHSTTCCCHH---------HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHH--C
T ss_pred HHHHHHHHhcCCCCHH---------HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhc--c
Confidence 8888887543 222 36678888888887778888888887743322222 35566666553 4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHH
Q 003227 525 GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~ 604 (837)
.++.+++.++..|+.+..... ..++.+++.|....++-++..++.++..-.... . +...++.
T Consensus 520 ~~e~vrR~aalgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGT---G-------n~~aIq~ 581 (963)
T 4ady_A 520 QHGNITRGLAVGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGT---G-------NNSAVKR 581 (963)
T ss_dssp SCHHHHHHHHHHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS---C-------CHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC---C-------CHHHHHH
Confidence 678899999999988764332 356778888877667888888888877655431 1 2345676
Q ss_pred HHHHc-CCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhc
Q 003227 605 LVQLT-RSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR 683 (837)
Q Consensus 605 L~~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~ 683 (837)
|++.+ .+.+..+|..|+.+|+.+....+ ..++.++..+.. +.++.+|..|+.+|+.++......
T Consensus 582 LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~----- 646 (963)
T 4ady_A 582 LLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQ----- 646 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCH-----
T ss_pred HHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcH-----
Confidence 66664 45688899999999998766532 346667766554 489999999999999998654332
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccH--HHHHHcCCHHHHHHHHhc-CCcHHHHHHHHHHHHHhhCCC
Q 003227 684 EGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNA--LRIVEEGGVPALVHLCSS-SGSKMARFMAALALAYMFDGR 758 (837)
Q Consensus 684 ~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~--~~i~~~~~i~~L~~ll~~-~~~~~~~~~a~~aL~~l~~~~ 758 (837)
.++..|..+.++.++.|+..|+.+|..+.....+. .++. .....|...+.+ +.++.++-.|..|.+-+..|.
T Consensus 647 -~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 647 -SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp -HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred -HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 25677888889999999999999999998632221 1111 112245566654 235788888888888775543
No 94
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.87 E-value=1.8e-10 Score=118.46 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=122.3
Q ss_pred HhCCCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhc
Q 003227 100 SRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (837)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~ 177 (837)
..+++|++|+++++....... -..+++|++|++++|..++... ......+++|++|++++ + .++.... .....
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~~-~~~~~ 127 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDR--C-GLQELGP-GLFRG 127 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTT--S-CCCCCCT-TTTTT
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCC--C-cCCEECH-hHhhC
Confidence 346889999999886543211 1257899999999875333211 11234578999999962 3 3332111 12345
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCC
Q 003227 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~ 254 (837)
+++|++|+++++ .++..... ....+++|++|++++| .++. ..+..+++|++|++++|. ++.... .....+++
T Consensus 128 l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~ 202 (285)
T 1ozn_A 128 LAALQYLYLQDN-ALQALPDD-TFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHP-HAFRDLGR 202 (285)
T ss_dssp CTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTT
T ss_pred CcCCCEEECCCC-cccccCHh-HhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCH-hHccCccc
Confidence 889999999987 44432111 1235789999999998 4443 347788999999999874 433221 22356889
Q ss_pred ccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchhHHHHH
Q 003227 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300 (837)
Q Consensus 255 L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~~~~~~ 300 (837)
|+.|++++|.++.... .....+++|+.|++++++...+.....+.
T Consensus 203 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~~~~~~ 247 (285)
T 1ozn_A 203 LMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCRARPLW 247 (285)
T ss_dssp CCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred ccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccCCCCcHHHH
Confidence 9999999987654322 23346899999999999855555544443
No 95
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.87 E-value=1.5e-07 Score=106.96 Aligned_cols=291 Identities=12% Similarity=0.051 Sum_probs=203.5
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHH--hcCChhHHHHHHHHHHHhcc-
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA--KSWREGLQSEAAKAIANLSV- 457 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~l~~- 457 (837)
+..+.+=+.++++.++..|..+|+++.. ++.. +..++.+.++| .+.++.+|+.|+-++.++..
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~---------~e~~-----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~ 178 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS---------REMA-----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT 178 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC---------HHHH-----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC---------HHHH-----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 4667777788999999999999998753 1112 23467888999 88999999999999999987
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh---C-C---------
Q 003227 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW---S-S--------- 524 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~---~-~--------- 524 (837)
+++..+ ..+.++.+.++|.+.++.++..|+.++..++..+. ..+ ...++.+++.|.+. . .
T Consensus 179 ~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~ 251 (621)
T 2vgl_A 179 SPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYF 251 (621)
T ss_dssp CGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETT
T ss_pred ChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcC
Confidence 554322 13569999999999999999999999999986431 111 12345555444321 1 1
Q ss_pred -CCHHHHHHHHHHHHHhhcCC--CchHHHHhcCcHHHHHHHHhcCC----------CHHHHHHHHHHHHHHhcCCCCCCc
Q 003227 525 -GGDGVLERAAGALANLAADD--KCSMEVALAGGVHALVMLARSCK----------FEGVQEQAARALANLAAHGDSNSN 591 (837)
Q Consensus 525 -~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~L~~ll~~~~----------~~~~~~~a~~~L~~l~~~~~~~~~ 591 (837)
.++-.+...+..|..++..+ +.+..+.+ .+..++..+.+.. ...+...|+.++..+.. .+
T Consensus 252 ~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~----~~- 324 (621)
T 2vgl_A 252 VPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS----EP- 324 (621)
T ss_dssp EESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC----CH-
T ss_pred CCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC----cH-
Confidence 15778888888888887632 33333322 3444443332211 13777888888888753 22
Q ss_pred ccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHh-hcCCCCHHHHHHHHHHHHh
Q 003227 592 NSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQ-SCSNASPGLQERAAGALWG 670 (837)
Q Consensus 592 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~v~~~A~~~L~~ 670 (837)
.. -..++..|..++.++++.++..|+.+|..++...+....+. .....++..+. + ++..++..|+.+|..
T Consensus 325 --~~--~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~~~~i~~~L~~d---~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 325 --NL--LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--THIETVINALKTE---RDVSVRQRAVDLLYA 395 (621)
T ss_dssp --HH--HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TTHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred --HH--HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HHHHHHHHHhccC---CCHhHHHHHHHHHHH
Confidence 11 12567888999998999999999999999987643323332 35777788887 6 889999999999999
Q ss_pred cccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 671 LSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 671 l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
++..... . ..+..|...+.+.+.+.+..++.++..++.
T Consensus 396 l~~~~Nv-~-----~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 396 MCDRSNA-Q-----QIVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HCCHHHH-H-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HcChhhH-H-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8854321 1 145567777778889999999998888875
No 96
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.85 E-value=5.1e-08 Score=121.63 Aligned_cols=354 Identities=13% Similarity=0.022 Sum_probs=225.9
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhcc-
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV- 457 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~- 457 (837)
..++.+++.+.+.++++|..|+.+|+.++....+ ... ...++.|+..+.++++.+|..|+.+|..++.
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~ 116 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE------YQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGE 116 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH------HHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH------HHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 3468899999989999999999999998753221 112 2346688888888899999999999999875
Q ss_pred -ChHH-----HHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhccC--ccchHHHHhhCCHHHHHHHHHhhCCCCHH
Q 003227 458 -NAKV-----AKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGGDG 528 (837)
Q Consensus 458 -~~~~-----~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~ 528 (837)
.++. ..... ...++.|++.+. +++..+++.|+.++..++.. +.....+ ...++.++..+ .+.++.
T Consensus 117 l~~~~~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L---~~~~~~ 190 (1230)
T 1u6g_C 117 LPPASSGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQL---TSPRLA 190 (1230)
T ss_dssp CC-----CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGG---GCSSHH
T ss_pred CCCcccccchHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHH---cCCcHH
Confidence 2220 11111 124788888888 58899999999999998842 2111111 12344455555 346789
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH
Q 003227 529 VLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL 608 (837)
Q Consensus 529 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~l 608 (837)
++..|+.+|..++..... .+ -...++.++..+...++..++..++.++..++.... ..... .-...++.++..
T Consensus 191 vR~~a~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~--~l~~l~~~ll~~ 263 (1230)
T 1u6g_C 191 VRKRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG--HRIGE--YLEKIIPLVVKF 263 (1230)
T ss_dssp HHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS--GGGTT--SCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH--HHHHH--HHHHHHHHHHHH
Confidence 999999999999874321 11 224578888888765444567778888888876421 11111 124788999999
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCh--hhHHHHHHcCCHHHHHHHHhh----------------------------------
Q 003227 609 TRSPHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVVLAQS---------------------------------- 652 (837)
Q Consensus 609 L~~~~~~~~~~a~~~L~~Ls~~~--~~~~~l~~~g~i~~L~~ll~~---------------------------------- 652 (837)
+.++++++|+.++.++..++... ..+..+- ..++.++..+..
T Consensus 264 l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~--~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1230)
T 1u6g_C 264 CNVDDDELREYCIQAFESFVRRCPKEVYPHVS--TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 341 (1230)
T ss_dssp HSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH--HHHHHHTTCCCCC---------------------------------
T ss_pred hcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH--HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccc
Confidence 99989999999999888876541 1111110 112222222210
Q ss_pred cCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCc----------------
Q 003227 653 CSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNP---------------- 716 (837)
Q Consensus 653 ~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~---------------- 716 (837)
..+..+.+|..|+.++..++......-.-.-...++.++..+.+.++.++..++.++..+...-
T Consensus 342 ~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 421 (1230)
T 1u6g_C 342 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQG 421 (1230)
T ss_dssp ---CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------C
T ss_pred ccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccc
Confidence 0012356799999999988863211001111345777888888888999999999888775411
Q ss_pred -ccHHHHH--HcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 717 -GNALRIV--EEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 717 -~~~~~i~--~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.....+. -...++.+...+.+.+ +.+|..+..+|+.+....+
T Consensus 422 ~~~~~~~~~~l~~ll~~l~~~l~~~~-~~vr~~~~~~L~~l~~~~~ 466 (1230)
T 1u6g_C 422 ETPLTMLQSQVPNIVKALHKQMKEKS-VKTRQCCFNMLTELVNVLP 466 (1230)
T ss_dssp CCHHHHHHHHTTHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHST
T ss_pred cchHHHHHHHhhHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHch
Confidence 0011111 1223556666687664 7789999999998876543
No 97
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=5.8e-09 Score=109.52 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=125.0
Q ss_pred HHhCCCcceeeecCcccc-----------hHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCC
Q 003227 99 ASRCMNLQKLRFRGAESA-----------DSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERIT 167 (837)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~-----------~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 167 (837)
..++++|+.|.+.+.... -..+...+|+|++|++.+|..+.. ..+ .+++|++|++. +..++
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~---~~~l~ 206 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEII---SGGLP 206 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEE---CSBCC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEe---cCCCC
Confidence 346689999999653210 112233789999999998743321 111 37899999995 44789
Q ss_pred HHHHHHHHh-cCCCCCEEEecCCCC--CCHH---HHHHHH--hhCCCccEEEecCCCCCChHH---h---hCCCCCCEee
Q 003227 168 SDAVKAIAL-CCPKLKKLRLSGIRD--ICGD---AINALA--KLCPNLTDIGFLDCLNVDEVA---L---GNVLSVRFLS 233 (837)
Q Consensus 168 ~~~l~~l~~-~~~~L~~L~l~~~~~--i~~~---~~~~l~--~~~~~L~~L~l~~~~~~~~~~---l---~~l~~L~~L~ 233 (837)
+.++..++. .+|+|++|+|+.+.+ ..+. .+..+. ..+|+|++|++.+| .+++.+ + ..+++|++|+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMD 285 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEE
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEE
Confidence 999888874 689999999964211 1111 111221 35799999999998 566532 2 2578999999
Q ss_pred ccCCCCCCHHHHHHHH---hcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 234 VAGTSNMKWGVVSQVW---HKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 234 ls~~~~i~~~~l~~~~---~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
|+.| .+++.+...+. ..+++|+.|++++|.+++.++..+...+ ...++++...
T Consensus 286 Ls~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 286 ISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 9875 79999887776 4579999999999999999998887644 2335665543
No 98
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.84 E-value=3.2e-09 Score=117.42 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=17.3
Q ss_pred hCCCcceeeecCcccchHHHHHcCCCccEEecCCCC
Q 003227 101 RCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCR 136 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 136 (837)
.+++|+.|++++|...+...-..+++|++|++++|.
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred cCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc
Confidence 345566666665543322112244555555555544
No 99
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.84 E-value=5.9e-07 Score=102.01 Aligned_cols=327 Identities=17% Similarity=0.095 Sum_probs=222.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChH
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (837)
-+..++++.+++.+.+..+..++..++..+.+. . + -++..+.+-|.++|+.++..|+++|+++.. ++
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~-------~--~---L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e 142 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSEL-------I--R---LINNAIKNDLASRNPTFMGLALHCIANVGS-RE 142 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHH-------H--H---HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHH-------H--H---HHHHHHHHhcCCCCHHHHHHHHHHhhccCC-HH
Confidence 357888899999999999999999877554321 1 1 124466777788999999999999999965 33
Q ss_pred HHHHHHHcCCHHHHHHHH--hcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 461 VAKAVAEEGGINILAVLA--RSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 461 ~~~~i~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
..+. .++.+.+++ .+.++.++..|+.++.++.. +++.. ...+.++.+.++| .+.++.++..|+.++
T Consensus 143 ~~~~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL---~d~d~~V~~~a~~~l 211 (621)
T 2vgl_A 143 MAEA-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLL---NDQHLGVVTAATSLI 211 (621)
T ss_dssp HHHH-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHT---TCSCHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHh---CCCCccHHHHHHHHH
Confidence 3332 367888888 88999999999999999986 33222 1246788999999 458899999999999
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHHh----cC-C-----------CHHHHHHHHHHHHHHhcCCCCCCcccchhhccch
Q 003227 538 ANLAADDKCSMEVALAGGVHALVMLAR----SC-K-----------FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGA 601 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~g~i~~L~~ll~----~~-~-----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 601 (837)
..++..... .+ ...++.++..|. .+ . ++-.|...+..+..++..+ .++....+. +.
T Consensus 212 ~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~--d~~~~~~l~--~~ 283 (621)
T 2vgl_A 212 TTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE--DPAVRGRLT--EC 283 (621)
T ss_dssp HHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS--SHHHHHHHH--HH
T ss_pred HHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC--CHHHHHHHH--HH
Confidence 999864321 11 134454544333 22 1 4677777777776665421 111111111 23
Q ss_pred HHHHHHHcC-C--------CCH--HHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 003227 602 LEALVQLTR-S--------PHE--GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWG 670 (837)
Q Consensus 602 i~~L~~lL~-~--------~~~--~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~ 670 (837)
++.++..+. . .+. .+...|+.++..+...++... .++..|..++.+ .++.+|..|+.+|..
T Consensus 284 L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~---~~~niry~aL~~l~~ 355 (621)
T 2vgl_A 284 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQH---RETNLRYLALESMCT 355 (621)
T ss_dssp HHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSC---SCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcC---CCcchHHHHHHHHHH
Confidence 333443321 1 123 788889999999875443332 256778888876 889999999999999
Q ss_pred cccCccchhhhhccCChHHHHHHhc-cCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHH
Q 003227 671 LSVSEANCIAIGREGGVAPLIALAR-SEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAAL 749 (837)
Q Consensus 671 l~~~~~~~~~l~~~~~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~ 749 (837)
++........+ ......++..++ +++..++..++.+|..++.. .+...++ ..|...+.+.+ ...+..+..
T Consensus 356 l~~~~~~~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~Iv-----~eL~~yl~~~d-~~~~~~~v~ 426 (621)
T 2vgl_A 356 LASSEFSHEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQIV-----AEMLSYLETAD-YSIREEIVL 426 (621)
T ss_dssp HTTCTTTHHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHHH-----HHHHHHHHHCC-HHHHHHHHH
T ss_pred HHhccCcHHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHHH-----HHHHHHHHhcC-HHHHHHHHH
Confidence 98653221222 235677888888 99999999999999999853 3443333 36777777664 677888888
Q ss_pred HHHHhhC
Q 003227 750 ALAYMFD 756 (837)
Q Consensus 750 aL~~l~~ 756 (837)
+++.++.
T Consensus 427 ~I~~la~ 433 (621)
T 2vgl_A 427 KVAILAE 433 (621)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.84 E-value=2.6e-10 Score=119.05 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=97.3
Q ss_pred cccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEe
Q 003227 79 LWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (837)
Q Consensus 79 ~~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l 158 (837)
..+.++++...++.-. ......+++|+.|++++|.......-..+++|++|++++|. ++. ....++|++|++
T Consensus 35 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~------l~~~~~L~~L~l 106 (317)
T 3o53_A 35 NVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQE------LLVGPSIETLHA 106 (317)
T ss_dssp GCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE-EEE------EEECTTCCEEEC
T ss_pred CCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc-ccc------ccCCCCcCEEEC
Confidence 3456666654443211 11224556777777777654321112245667777776654 221 001233444433
Q ss_pred CCC------------------CCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh
Q 003227 159 GPD------------------FCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE 220 (837)
Q Consensus 159 ~~~------------------~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 220 (837)
++. ..+.++...-. ....+++|++|+++++ .+++.....+...+++|++|++++|. ++.
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence 210 01122211100 1123456666666665 44433333333445667777776663 332
Q ss_pred -HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccccccccccccc
Q 003227 221 -VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (837)
Q Consensus 221 -~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~ 292 (837)
.....+++|++|++++| .++... .-...+++|+.|++++|.++. +......+++|+.|++++|+ ++
T Consensus 184 ~~~~~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~-~~ 250 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSN-KLAFMG--PEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNG-FH 250 (317)
T ss_dssp EECCCCCTTCCEEECCSS-CCCEEC--GGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCC-CB
T ss_pred cccccccccCCEEECCCC-cCCcch--hhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCC-cc
Confidence 33345677777777766 333211 113456778888888776652 11112346778888888777 55
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.82 E-value=3e-09 Score=117.61 Aligned_cols=175 Identities=20% Similarity=0.142 Sum_probs=112.5
Q ss_pred HHhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC
Q 003227 99 ASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (837)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~ 178 (837)
...+++|++|++++|...+......+++|++|++++|. +++. . ....+++|++|+++ +| .++... . ...+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~--~n-~l~~~~--~-~~~l 264 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDI--G-TLASLTNLTDLDLA--NN-QISNLA--P-LSGL 264 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECC--SS-CCCCCG--G-GTTC
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCCC-cccc--h-hhhcCCCCCEEECC--CC-ccccch--h-hhcC
Confidence 34668899999998866543333467889999998876 4432 1 23467888888885 34 333211 1 3457
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEE
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L 258 (837)
++|++|+++++ .+++.. . ...+++|++|++++|...+...+..+++|++|++++|. +++... ...+++|+.|
T Consensus 265 ~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L 336 (466)
T 1o6v_A 265 TKLTELKLGAN-QISNIS--P-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRL 336 (466)
T ss_dssp TTCSEEECCSS-CCCCCG--G-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEE
T ss_pred CCCCEEECCCC-ccCccc--c-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCchh---hccCccCCEe
Confidence 88888888887 444321 1 33568888888888743333457778888888888773 332211 3567788888
Q ss_pred EeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 259 ~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
++++|.+++. . -...+++|+.|++++|. +++..
T Consensus 337 ~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~ 369 (466)
T 1o6v_A 337 FFYNNKVSDV--S-SLANLTNINWLSAGHNQ-ISDLT 369 (466)
T ss_dssp ECCSSCCCCC--G-GGTTCTTCCEEECCSSC-CCBCG
T ss_pred ECCCCccCCc--h-hhccCCCCCEEeCCCCc-cCccc
Confidence 8888766543 1 22357788888888776 55544
No 102
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.77 E-value=9.5e-11 Score=121.91 Aligned_cols=188 Identities=15% Similarity=0.087 Sum_probs=100.2
Q ss_pred CCCcceeeecCcccchHHH-HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 102 CMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
+++|+.|+++++....... ...+++|++|+++++. ++..........+++|++|+++ ++ .+.... ......+++
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~--~n-~l~~~~-~~~~~~l~~ 151 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDIS--HT-HTRVAF-NGIFNGLSS 151 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECT--TS-CCEECS-TTTTTTCTT
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECC--CC-cCCccc-hhhcccCcC
Confidence 5667777777664432100 1146677777777754 2211111123456777777774 23 222111 111234677
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccE
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~ 257 (837)
|++|+++++ .+++..+......+++|++|++++| .+++ ..+..+++|++|++++|. ++..... ....+++|+.
T Consensus 152 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~ 227 (306)
T 2z66_A 152 LEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQV 227 (306)
T ss_dssp CCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCE
T ss_pred CCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChh-hccCcccCCE
Confidence 777777776 4443222222344677888888777 3433 345677788888887763 2221111 1345777888
Q ss_pred EEeccCCCCHHHHHHHHhcC-cccccccccccccccchhHHHH
Q 003227 258 LDVSRTDVGPITISRLLTSS-KSLKVLCALNCPVLEEENNISA 299 (837)
Q Consensus 258 L~l~~~~i~~~~l~~l~~~~-~~L~~l~l~~c~~i~~~~~~~~ 299 (837)
|++++|.++......+. .+ ++|+.|++++++-..+..+..|
T Consensus 228 L~L~~N~l~~~~~~~~~-~~~~~L~~L~L~~N~~~~~c~~~~~ 269 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDFACTCEHQSF 269 (306)
T ss_dssp EECTTSCCCBCSSSSCC-CCCTTCCEEECTTCCEECSGGGHHH
T ss_pred eECCCCCCcccCHHHHH-hhhccCCEEEccCCCeecccChHHH
Confidence 88888766533221111 23 4778888887774334443333
No 103
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.76 E-value=6.2e-11 Score=123.34 Aligned_cols=180 Identities=15% Similarity=0.107 Sum_probs=89.3
Q ss_pred hCCCcceeeecCcccch----HHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHh
Q 003227 101 RCMNLQKLRFRGAESAD----SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 176 (837)
.+++|+.|+++++.... ......+++|++|++++|. ++. +......+++|++|++++ + .++.........
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~--l~~~~~~l~~L~~L~l~~--n-~l~~~~~~~~~~ 123 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT--MSSNFLGLEQLEHLDFQH--S-NLKQMSEFSVFL 123 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEE--EEEEEETCTTCCEEECTT--S-EEESSTTTTTTT
T ss_pred ccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-ccc--ChhhcCCCCCCCEEECCC--C-cccccccchhhh
Confidence 44666677766664431 1222246667777776654 221 111123456677777742 2 222211111223
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh----HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~ 252 (837)
.+++|++|+++++ .++..... ....+++|++|++++| .+++ ..+..+++|++|++++| .++.... .....+
T Consensus 124 ~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l 198 (306)
T 2z66_A 124 SLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSL 198 (306)
T ss_dssp TCTTCCEEECTTS-CCEECSTT-TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTC
T ss_pred hccCCCEEECCCC-cCCccchh-hcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCH-HHhcCC
Confidence 4667777777766 33321111 1223567777777766 3332 23456677777777765 2322211 112446
Q ss_pred CCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccc
Q 003227 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (837)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~ 293 (837)
++|+.|++++|.++...... ...+++|+.|++++|. ++.
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~ 237 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNH-IMT 237 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSC-CCB
T ss_pred CCCCEEECCCCccCccChhh-ccCcccCCEeECCCCC-Ccc
Confidence 67777777776554211111 1246677777777765 443
No 104
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.76 E-value=6.2e-10 Score=113.34 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=117.6
Q ss_pred CCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCC
Q 003227 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L 181 (837)
+++|+.|+++++.......-..+++|++|++++|. ++.. . ....+++|++|+++ ++ .++.... .....+++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L~--~n-~l~~~~~-~~~~~l~~L 111 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDI--S-ALKELTNLTYLILT--GN-QLQSLPN-GVFDKLTNL 111 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEECT--TS-CCCCCCT-TTTTTCTTC
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCc--h-hhcCCCCCCEEECC--CC-ccCccCh-hHhcCCcCC
Confidence 37899999998865532223368999999999976 4431 2 34568899999996 23 4442111 122458899
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEE
Q 003227 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (837)
Q Consensus 182 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L 258 (837)
++|+++++ .++... ......+++|++|++++| .++. ..+..+++|++|++++|. ++... ......+++|+.|
T Consensus 112 ~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L 186 (272)
T 3rfs_A 112 KELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLP-EGVFDKLTQLKDL 186 (272)
T ss_dssp CEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEE
T ss_pred CEEECCCC-cCCccC-HHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccC-HHHhcCCccCCEE
Confidence 99999988 454321 112345789999999998 4443 336788999999999883 43221 1223568899999
Q ss_pred EeccCCCCHHHHHHHHhcCcccccccccccccc
Q 003227 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (837)
Q Consensus 259 ~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i 291 (837)
++++|.++...- .....+++|+.|++++|+..
T Consensus 187 ~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 187 RLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcCCccCH-HHHhCCcCCCEEEccCCCcc
Confidence 999987653211 22335889999999998743
No 105
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.73 E-value=3.3e-09 Score=117.15 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccc
Q 003227 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 281 (837)
++|++|++++| .+++ ..+..+++|++|++++|. ++.... .....+++|++|++++|.++.... .....+++|+
T Consensus 275 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 350 (455)
T 3v47_A 275 SGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNFLGSIDS-RMFENLDKLE 350 (455)
T ss_dssp SCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSCCCEECG-GGGTTCTTCC
T ss_pred cCceEEEecCc-cccccchhhcccCCCCCEEECCCCc-ccccCh-hHhcCcccCCEEECCCCccCCcCh-hHhcCcccCC
Confidence 34555555555 2222 234566677777776652 322111 112346667777777765542211 1122466777
Q ss_pred cccccccccccch
Q 003227 282 VLCALNCPVLEEE 294 (837)
Q Consensus 282 ~l~l~~c~~i~~~ 294 (837)
.|++++|. ++..
T Consensus 351 ~L~Ls~N~-l~~~ 362 (455)
T 3v47_A 351 VLDLSYNH-IRAL 362 (455)
T ss_dssp EEECCSSC-CCEE
T ss_pred EEECCCCc-cccc
Confidence 77777665 4443
No 106
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.73 E-value=3.7e-07 Score=113.89 Aligned_cols=263 Identities=15% Similarity=0.079 Sum_probs=181.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhccCh------HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccch
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNA------KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK 503 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~------~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 503 (837)
++.|+.-+.++|+++|..|...|.+....+ .... ..++.+++.+.++++.+|..|+.+|..++..-..
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~-----~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~- 81 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSER-----KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE- 81 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-
Confidence 557788888999999999999998865422 1111 2367788888899999999999999999863211
Q ss_pred HHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch------HHHHhcCcHHHHHHHHhcCCCHHHHHHHHH
Q 003227 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS------MEVALAGGVHALVMLARSCKFEGVQEQAAR 577 (837)
Q Consensus 504 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~------~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~ 577 (837)
..+ ...++.++..+ .++++.++..++.+|..++..-... ..-.....++.|+..+.+.++..++..|+.
T Consensus 82 ~~~--~~i~~~Ll~~l---~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~ 156 (1230)
T 1u6g_C 82 YQV--ETIVDTLCTNM---LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD 156 (1230)
T ss_dssp HHH--HHHHHHHHHHT---TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 111 12345555555 4567788999999999988632111 111223568888888885345899999999
Q ss_pred HHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCC
Q 003227 578 ALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNAS 657 (837)
Q Consensus 578 ~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~ 657 (837)
++..++... +..... .-...++.++..+.++++.+|..|+.+|..++...+.. + -...++.++..+.. ..+
T Consensus 157 ~l~~~~~~~---~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~--~~~ 227 (1230)
T 1u6g_C 157 IMADMLSRQ---GGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSK--NDS 227 (1230)
T ss_dssp HHHHHHHHT---CSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHH--TCS
T ss_pred HHHHHHHHh---HhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhcc--CCc
Confidence 999998531 110111 12467788888888889999999999999998763322 1 12357888888876 233
Q ss_pred HHHHHHHHHHHHhcccCccchhhhh--ccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 658 PGLQERAAGALWGLSVSEANCIAIG--REGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 658 ~~v~~~A~~~L~~l~~~~~~~~~l~--~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
..++..|+.++..++..... .+. -...++.++..+.+.+++++..++.++..++.
T Consensus 228 ~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 228 MSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp SCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46777788888888753211 122 13567888899988899999999999998876
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.73 E-value=3.7e-10 Score=117.84 Aligned_cols=157 Identities=11% Similarity=0.110 Sum_probs=111.9
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh
Q 003227 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 202 (837)
.+++|++|++++|. ++...- .....+++|++|+++ .+.++......+...+++|++|+++++ .++.. ....
T Consensus 118 ~~~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~Ls---~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~- 188 (317)
T 3o53_A 118 RGQGKKNIYLANNK-ITMLRD-LDEGCRSRVQYLDLK---LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQV- 188 (317)
T ss_dssp CCSSCEEEECCSSC-CCSGGG-BCTGGGSSEEEEECT---TSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCC-
T ss_pred ccCCCCEEECCCCC-CCCccc-hhhhccCCCCEEECC---CCCCCcccHHHHhhccCcCCEEECCCC-cCccc--cccc-
Confidence 35678888888876 443211 122457899999996 335655444445556899999999998 55432 1111
Q ss_pred hCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccc
Q 003227 203 LCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L 280 (837)
.+++|++|++++| .++. ..+..+++|++|++++| .++. +......+++|+.|++++|.+....+..+...+++|
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 3799999999999 4544 34788999999999998 4442 222246689999999999999966777777789999
Q ss_pred cccccccccccc
Q 003227 281 KVLCALNCPVLE 292 (837)
Q Consensus 281 ~~l~l~~c~~i~ 292 (837)
+.+++.+|..++
T Consensus 265 ~~l~l~~~~~l~ 276 (317)
T 3o53_A 265 QTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHHHHH
T ss_pred eEEECCCchhcc
Confidence 999988766444
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.73 E-value=1.7e-07 Score=107.97 Aligned_cols=198 Identities=14% Similarity=0.111 Sum_probs=153.0
Q ss_pred HhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHH-HHHhcCChhHHHHHHHHHHHh
Q 003227 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLL-DLAKSWREGLQSEAAKAIANL 455 (837)
Q Consensus 377 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~l 455 (837)
++..|.++++.|++++++.|..|+.+|++|+.+ +..+..+..+|++..++ .+|.+++.+++..|+++|++|
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~--------~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL 103 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQD--------AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL 103 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS--------HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--------cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344566788889999999999999999998842 34466788999998765 568889999999999999999
Q ss_pred cc--ChHHHHHHHHcCCHHHHHHHHhcCC---------------------HHHHHHHHHHHHhhccC-ccchHHHHhhCC
Q 003227 456 SV--NAKVAKAVAEEGGINILAVLARSMN---------------------RLVAEEAAGGLWNLSVG-EEHKGAIADAGG 511 (837)
Q Consensus 456 ~~--~~~~~~~i~~~g~i~~L~~lL~~~~---------------------~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~ 511 (837)
+. .++.+..+.+.|++++|..+++... ..+.+.++.+|++|+.. ++....+...++
T Consensus 104 ~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 104 AQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQT 183 (684)
T ss_dssp HHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred HhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccc
Confidence 86 5789999999999999999885411 23455678899999864 467778888999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchHHHHhcCc---HHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGG---VHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~---i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
++.|+..|........+++..|+.+|..++.+. +....+.+.+. ...+..+..+. ...+..+++.|.|+..
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~--~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT--DPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS--CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC--cHHHHHHHHHHHhHhh
Confidence 999999987645566789999999999999864 45566666654 23333333333 3446788999999853
No 109
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.72 E-value=3e-10 Score=119.00 Aligned_cols=180 Identities=17% Similarity=0.191 Sum_probs=121.8
Q ss_pred CCCcceeeecCcccchHHH-HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 102 CMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
.++++.|+++++....... ...+++|++|++++|. ++ .+......+++|++|++++ + .++ .+..-...+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~--n-~l~--~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLAR--N-PLR--ALPASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEES--C-CCC--CCCGGGGGCTT
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCC--C-ccc--cCcHHHhcCcC
Confidence 4789999999986652111 1258899999999986 44 2333345789999999963 3 444 22222456899
Q ss_pred CCEEEecCCCCCCHHHHHHH--------HhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHh
Q 003227 181 LKKLRLSGIRDICGDAINAL--------AKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWH 250 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l--------~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~ 250 (837)
|++|++++|..++. .-..+ ...+++|++|++++| .++. ..+..+++|++|++++|. ++. +.....
T Consensus 152 L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~--l~~~l~ 226 (328)
T 4fcg_A 152 LRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSA--LGPAIH 226 (328)
T ss_dssp CCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCC--CCGGGG
T ss_pred CCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCc--Cchhhc
Confidence 99999998743221 10111 123799999999998 4443 457889999999999984 332 212246
Q ss_pred cCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 251 KLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 251 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
.+++|+.|++++|.+....- .....+++|+.|++++|..++...
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCC
T ss_pred cCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcc
Confidence 78999999999976543211 122358999999999998655443
No 110
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.72 E-value=4.1e-10 Score=115.68 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=122.7
Q ss_pred CCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
++|++|+++++....... -..+++|++|+++++. ++... ......+++|++|+++ ++..++..... ....+++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~--~n~~l~~~~~~-~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARID-AAAFTGLALLEQLDLS--DNAQLRSVDPA-TFHGLGR 106 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECC--SCTTCCCCCTT-TTTTCTT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeC-HhhcCCccCCCEEeCC--CCCCccccCHH-HhcCCcC
Confidence 689999999987654321 1368999999999975 44321 1223568999999996 34324332111 1245899
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccE
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~ 257 (837)
|++|+++++ .++.... .....+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++|+.
T Consensus 107 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~ 181 (285)
T 1ozn_A 107 LHTLHLDRC-GLQELGP-GLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVP-ERAFRGLHSLDR 181 (285)
T ss_dssp CCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCE
T ss_pred CCEEECCCC-cCCEECH-hHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccC-HHHhcCccccCE
Confidence 999999998 4543211 123457999999999984 433 34788999999999997 343221 112356899999
Q ss_pred EEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 258 L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
|++++|.++...... ...+++|+.|++++|. +++..
T Consensus 182 L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~ 217 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHA-FRDLGRLMTLYLFANN-LSALP 217 (285)
T ss_dssp EECCSSCCCEECTTT-TTTCTTCCEEECCSSC-CSCCC
T ss_pred EECCCCcccccCHhH-ccCcccccEeeCCCCc-CCcCC
Confidence 999998776432222 2358999999999997 66655
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.71 E-value=1.2e-09 Score=110.41 Aligned_cols=145 Identities=18% Similarity=0.161 Sum_probs=76.0
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh
Q 003227 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 202 (837)
.+++|++|++++|. +++- . -...+++|++|+++ ++ .+++... ...+++|++|+++++ .+++ +..+..
T Consensus 39 ~l~~L~~L~l~~n~-i~~l--~-~l~~l~~L~~L~L~--~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~~~ 105 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSL--A-GMQFFTNLKELHLS--HN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNGIPS 105 (263)
T ss_dssp HHTTCSEEECTTSC-CCCC--T-TGGGCTTCCEEECC--SS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTCCC
T ss_pred hcCcCcEEECcCCC-cccc--h-HHhhCCCCCEEECC--CC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCcccc
Confidence 45566666666654 3321 1 12346666666664 12 3332211 334666666666666 3332 111111
Q ss_pred hCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccc
Q 003227 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~ 282 (837)
++|++|++++|..-+-..+..+++|++|++++|. +++.. ....+++|+.|++++|.+++. .....+++|+.
T Consensus 106 --~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~ 176 (263)
T 1xeu_A 106 --ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW 176 (263)
T ss_dssp --SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE
T ss_pred --CcccEEEccCCccCCChhhcCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCE
Confidence 5677777776632222456666777777776653 33321 234566677777777665543 22234666777
Q ss_pred ccccccc
Q 003227 283 LCALNCP 289 (837)
Q Consensus 283 l~l~~c~ 289 (837)
|++++++
T Consensus 177 L~l~~N~ 183 (263)
T 1xeu_A 177 IDLTGQK 183 (263)
T ss_dssp EEEEEEE
T ss_pred EeCCCCc
Confidence 7776665
No 112
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.71 E-value=3.1e-08 Score=114.13 Aligned_cols=196 Identities=15% Similarity=0.066 Sum_probs=149.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHH-HHHhhCCCCHHHHHHHHHHHHHhhcC--CCc
Q 003227 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD-LIFKWSSGGDGVLERAAGALANLAAD--DKC 546 (837)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~-lL~~~~~~~~~~~~~a~~~L~~l~~~--~~~ 546 (837)
.+.++++.|+++++..|..|+.+|.+|+.++..+..+...|++..++. +| .+.+.+++..|+++|+||+.+ .+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL---~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETL---TDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTT---TCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHc---CCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 566778889999999999999999999999999999999999988765 45 468899999999999999974 577
Q ss_pred hHHHHhcCcHHHHHHHHhcCC-------------C-------HHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHH
Q 003227 547 SMEVALAGGVHALVMLARSCK-------------F-------EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV 606 (837)
Q Consensus 547 ~~~l~~~g~i~~L~~ll~~~~-------------~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~ 606 (837)
+..+++.|+++.|..++.... . .++...++.+|.+|+.. +......+...+.++.|+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~---s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA---RDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHhcccHHHHH
Confidence 889999999999999886321 0 12344677888898875 444555666789999999
Q ss_pred HHcCC---CCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 607 QLTRS---PHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 607 ~lL~~---~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
..|.+ ...+++..|+.+|..++.+ ++....+.+.+....+..++.. ...+...+..++++|.|+.
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 88743 2568999999999999997 5556667666643322222211 1134445778889998874
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.71 E-value=7.9e-10 Score=122.46 Aligned_cols=135 Identities=12% Similarity=0.068 Sum_probs=79.2
Q ss_pred CCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCC
Q 003227 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSV 229 (837)
Q Consensus 150 ~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L 229 (837)
+++|+.|+++ ++ .++...-.. ...+++|++|+|+++ .+++.....+...+++|++|++++|...+......+++|
T Consensus 119 l~~L~~L~L~--~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L 193 (487)
T 3oja_A 119 GQGKKNIYLA--NN-KITMLRDLD-EGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193 (487)
T ss_dssp CSSCEEEECC--SS-CCCSGGGBC-GGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTC
T ss_pred cCCCCEEECC--CC-CCCCCCchh-hcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccccccccCCCC
Confidence 4666777774 22 333221111 134677788888777 555443344444567888888888743222344567888
Q ss_pred CEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 230 RFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 230 ~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
++|++++|. ++.... . ...+++|+.|++++|.++. +......+++|+.|++++|+ ++...
T Consensus 194 ~~L~Ls~N~-l~~~~~-~-~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~-l~c~~ 253 (487)
T 3oja_A 194 KTLDLSSNK-LAFMGP-E-FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNG-FHCGT 253 (487)
T ss_dssp CEEECCSSC-CCEECG-G-GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCC-BCHHH
T ss_pred CEEECCCCC-CCCCCH-h-HcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCC-CcCcc
Confidence 888888763 432211 1 3457788888888877652 21122346788888888887 55333
No 114
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.71 E-value=1e-09 Score=114.20 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=110.7
Q ss_pred hCCCcceeeecCcccchHHHH----HcCCCccEEecCCCCCCCHH--HHHHHHh-cCCCCCeEEeCCCCCCCCCHHHHHH
Q 003227 101 RCMNLQKLRFRGAESADSIIH----LQARNLRELSGDYCRKITDA--TLSVIVA-RHEALESLQLGPDFCERITSDAVKA 173 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~c~~~~~~--~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~ 173 (837)
.+++|++|+++++........ ..+++|++|+++++. ++.. .+..+.. ..++|++|++++ + .++......
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~--N-~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQ--A-HSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEES--C-SCCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeC--C-CCccchHHH
Confidence 357899999988866543221 357889999998875 4332 2222211 137899999962 3 343322112
Q ss_pred HHhcCCCCCEEEecCCCCCCHH-HHH-HH-HhhCCCccEEEecCCCCCCh-H-----HhhCCCCCCEeeccCCCCCCHHH
Q 003227 174 IALCCPKLKKLRLSGIRDICGD-AIN-AL-AKLCPNLTDIGFLDCLNVDE-V-----ALGNVLSVRFLSVAGTSNMKWGV 244 (837)
Q Consensus 174 l~~~~~~L~~L~l~~~~~i~~~-~~~-~l-~~~~~~L~~L~l~~~~~~~~-~-----~l~~l~~L~~L~ls~~~~i~~~~ 244 (837)
+ ..+++|++|+++++ .++.. .+. .+ ...+++|++|++++| .++. . .+..+++|++|++++|. ++...
T Consensus 169 ~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 244 (312)
T 1wwl_A 169 V-RVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAA 244 (312)
T ss_dssp C-CCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSC
T ss_pred h-ccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCccc
Confidence 2 35788999999988 44432 222 22 155788999999988 4552 1 23577899999998873 33321
Q ss_pred HHHHHhcCCCccEEEeccCCCCHHHHHHHHhc-Ccccccccccccccccch
Q 003227 245 VSQVWHKLPKLVGLDVSRTDVGPITISRLLTS-SKSLKVLCALNCPVLEEE 294 (837)
Q Consensus 245 l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~-~~~L~~l~l~~c~~i~~~ 294 (837)
.......+++|+.|++++|.++ .+ ... .++|+.|+++++. +++.
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~--~i---p~~~~~~L~~L~Ls~N~-l~~~ 289 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK--QV---PKGLPAKLSVLDLSYNR-LDRN 289 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS--SC---CSSCCSEEEEEECCSSC-CCSC
T ss_pred chhhhhhcCCCCEEECCCCccC--hh---hhhccCCceEEECCCCC-CCCC
Confidence 0112234688999999998776 11 111 2688999998886 6554
No 115
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.70 E-value=2.8e-09 Score=113.18 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=81.3
Q ss_pred hCCCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC
Q 003227 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~ 178 (837)
.+++|+.|+++++....... -..+++|++|++++|. ++.-. ......+++|++|++++ + .++..........+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~l~~~~~~~~l 148 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLS-SSWFKPLSSLTFLNLLG--N-PYKTLGETSLFSHL 148 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCC-HHHHTTCTTCSEEECTT--C-CCSSSCSSCSCTTC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCC-HhHhCCCccCCEEECCC--C-CCcccCchhhhccC
Confidence 45667777777765443211 1245677777777764 33211 12234567777777742 2 33211100112346
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCc
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L 255 (837)
++|++|+++++..++...... ...+++|++|++++|. ++. ..+..+++|++|++++|. ++... ..+...+++|
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L 224 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSV 224 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTE
T ss_pred CCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccch-hhhhhhcccc
Confidence 777777777663232211111 1235677777777763 332 345666777777777664 32222 2233446677
Q ss_pred cEEEeccCCCC
Q 003227 256 VGLDVSRTDVG 266 (837)
Q Consensus 256 ~~L~l~~~~i~ 266 (837)
+.|++++|.++
T Consensus 225 ~~L~L~~n~l~ 235 (353)
T 2z80_A 225 ECLELRDTDLD 235 (353)
T ss_dssp EEEEEESCBCT
T ss_pred cEEECCCCccc
Confidence 77777765543
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.68 E-value=4.6e-09 Score=115.18 Aligned_cols=183 Identities=16% Similarity=0.082 Sum_probs=125.1
Q ss_pred cccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCC
Q 003227 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (837)
Q Consensus 81 ~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~ 160 (837)
+.++++...++.- .. ...+++|++|+++++...... -..+++|++|++++|. ++... ...+++|++|++++
T Consensus 45 ~~L~Ls~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 45 TSLDCHNSSITDM--TG-IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYLNCDT 115 (457)
T ss_dssp CEEECCSSCCCCC--TT-GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECCS
T ss_pred CEEEccCCCcccC--hh-hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCC-Cceee----cCCCCcCCEEECCC
Confidence 5666666444321 11 345688999999888655421 2367889999998876 44321 35678899999952
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCC
Q 003227 161 DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240 (837)
Q Consensus 161 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i 240 (837)
+ .++... ...+++|++|+++++ .++.- . ...+++|++|++++|..++...+..+++|++|++++| .+
T Consensus 116 --N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l---~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l 182 (457)
T 3bz5_A 116 --N-KLTKLD----VSQNPLLTYLNCARN-TLTEI---D-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KI 182 (457)
T ss_dssp --S-CCSCCC----CTTCTTCCEEECTTS-CCSCC---C-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CC
T ss_pred --C-cCCeec----CCCCCcCCEEECCCC-cccee---c-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-cc
Confidence 3 444321 345788999999887 55542 1 3357889999999887666667788899999999887 34
Q ss_pred CHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccch
Q 003227 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (837)
Q Consensus 241 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~ 294 (837)
+.-. ...+++|+.|++++|.++... ...+++|+.|++++|. ++..
T Consensus 183 ~~l~----l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~-l~~i 227 (457)
T 3bz5_A 183 TELD----VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNK-LTEI 227 (457)
T ss_dssp CCCC----CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCC
T ss_pred ceec----cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCc-cccc
Confidence 3321 456888999999998776532 2358899999999886 6653
No 117
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.68 E-value=5.1e-09 Score=107.50 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=112.0
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh
Q 003227 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 202 (837)
.+++|++|++++|. +++- .. ...+++|++|+++ ++ .+++.. . ...+++|++|+++++ .+++ +.. ..
T Consensus 44 ~l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~--~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~--~~~-l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLN--GN-KLTDIK--P-LANLKNLGWLFLDEN-KVKD--LSS-LK 109 (291)
T ss_dssp HHHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECC--SS-CCCCCG--G-GTTCTTCCEEECCSS-CCCC--GGG-GT
T ss_pred hcCcccEEEccCCC-cccC--hh-HhcCCCCCEEEcc--CC-ccCCCc--c-cccCCCCCEEECCCC-cCCC--Chh-hc
Confidence 57899999999986 4322 12 4568999999996 34 444322 1 456899999999998 5654 233 34
Q ss_pred hCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccc
Q 003227 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~ 282 (837)
.+++|++|++++|...+-..+..+++|++|++++|. +++. .....+++|+.|++++|.+++-.- ...+++|+.
T Consensus 110 ~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~ 182 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN 182 (291)
T ss_dssp TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCCccccchh---hcCCCccCE
Confidence 679999999999954444678899999999999984 4332 234678999999999998764322 446899999
Q ss_pred ccccccccccchh
Q 003227 283 LCALNCPVLEEEN 295 (837)
Q Consensus 283 l~l~~c~~i~~~~ 295 (837)
|++++|. +++..
T Consensus 183 L~L~~N~-i~~l~ 194 (291)
T 1h6t_A 183 LYLSKNH-ISDLR 194 (291)
T ss_dssp EECCSSC-CCBCG
T ss_pred EECCCCc-CCCCh
Confidence 9999996 77654
No 118
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.67 E-value=2.8e-09 Score=108.38 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=117.2
Q ss_pred HhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCC
Q 003227 100 SRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (837)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~ 179 (837)
..+++|+.|+++++...+...-..+++|++|++++|. ++... ......+++|++|++++ + .++... ......++
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~~~-~~~~~~l~ 133 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ-LQSLP-NGVFDKLTNLKELVLVE--N-QLQSLP-DGVFDKLT 133 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTT--S-CCCCCC-TTTTTTCT
T ss_pred ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCccC-hhHhcCCcCCCEEECCC--C-cCCccC-HHHhccCC
Confidence 4679999999999976653222378999999999986 44211 12235689999999962 3 443211 11234589
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCcc
Q 003227 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~ 256 (837)
+|++|+++++ .++... ......+++|++|++++| .+++ ..+..+++|++|++++|. ++... ......+++|+
T Consensus 134 ~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~ 208 (272)
T 3rfs_A 134 NLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQ 208 (272)
T ss_dssp TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCC
T ss_pred CCCEEECCCC-ccCccC-HHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-CCccC-HHHHhCCcCCC
Confidence 9999999998 555321 112345799999999999 4443 336789999999999984 33211 12346789999
Q ss_pred EEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 257 ~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
.|++++|.+. ..|++|+.+++..+.
T Consensus 209 ~L~l~~N~~~--------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 209 YIWLHDNPWD--------CTCPGIRYLSEWINK 233 (272)
T ss_dssp EEECCSSCBC--------CCTTTTHHHHHHHHH
T ss_pred EEEccCCCcc--------ccCcHHHHHHHHHHh
Confidence 9999998664 236777777766554
No 119
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.65 E-value=7e-09 Score=116.67 Aligned_cols=182 Identities=14% Similarity=0.168 Sum_probs=95.6
Q ss_pred CCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCH-HHHHHHHhcCCCC
Q 003227 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITS-DAVKAIALCCPKL 181 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~~~~~L 181 (837)
++|+.|+++++..........+++|++|++++|. ++.... .....+++|++|+++ ++ .++. ..+......+++|
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~--~N-~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVF-ENCGHLTELETLILQ--MN-QLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTT-TTCCCCSSCCEEECC--SS-CCCBHHHHHHHHTTCTTC
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCc-cChhhh-hhhccCCCCCEEEcc--CC-ccCccccchHHHhhCCCC
Confidence 3466666666544322111356677777777765 433111 112456677777774 23 4443 1222333456777
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCC-CCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEe
Q 003227 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (837)
Q Consensus 182 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l-~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l 260 (837)
++|+++++ .+++..-......+++|++|++++| .+++.....+ ++|++|++++| .++ .+..-...+++|++|++
T Consensus 377 ~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~L~~L~Ls~N-~l~--~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 377 QQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSN-KIK--SIPKQVVKLEALQELNV 451 (520)
T ss_dssp CEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCCTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEEC
T ss_pred CEEECCCC-cCCcccccchhccCccCCEEECcCC-CCCcchhhhhcccCCEEECCCC-ccc--ccchhhhcCCCCCEEEC
Confidence 77777776 4433111111234567777777777 4554444444 57777777776 333 12121235777777777
Q ss_pred ccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 261 SRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 261 ~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
++|.++.-.. .....+++|+.|++++++-..+..
T Consensus 452 ~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 452 ASNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCcCCccCH-HHhccCCcccEEECcCCCCcccCC
Confidence 7766542110 012346777777777777333333
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.64 E-value=4e-09 Score=98.52 Aligned_cols=103 Identities=29% Similarity=0.348 Sum_probs=44.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhC
Q 003227 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (837)
Q Consensus 125 ~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 204 (837)
++|++|++++|. +++..+......+++|+.|+++ +| .++.. .....+++|++|+++++ .+++. +..+...+
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~--~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLI--NV-GLISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEE--SS-CCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHC
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCc--CC-CCCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhC
Confidence 455555555544 3211222222344555555553 12 23221 11223455555555555 33321 22233335
Q ss_pred CCccEEEecCCCCCCh----HHhhCCCCCCEeeccCC
Q 003227 205 PNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGT 237 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~----~~l~~l~~L~~L~ls~~ 237 (837)
++|++|++++| .+++ ..+..+++|++|++++|
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC
Confidence 55555555555 2322 23344555555555554
No 121
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.63 E-value=2.1e-09 Score=114.10 Aligned_cols=181 Identities=11% Similarity=0.000 Sum_probs=123.4
Q ss_pred CCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
++|+.|+++++....... -..+++|++|++++|. ++... ......+++|++|++++ + .++.... .....+++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~--n-~l~~~~~-~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIE-EDSFSSLGSLEHLDLSY--N-YLSNLSS-SWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECCS--S-CCSSCCH-HHHTTCTT
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccC-HhhcCCCCCCCEEECCC--C-cCCcCCH-hHhCCCcc
Confidence 579999999987654222 2368999999999985 44311 11235689999999963 3 4443222 22356899
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccE
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~ 257 (837)
|++|+++++ .++.-........+++|++|++++|..++. ..+..+++|++|++++|. ++... ......+++|++
T Consensus 126 L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~ 202 (353)
T 2z80_A 126 LTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYE-PKSLKSIQNVSH 202 (353)
T ss_dssp CSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEEC-TTTTTTCSEEEE
T ss_pred CCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccC-HHHHhccccCCe
Confidence 999999998 454211101234679999999999854444 467889999999999874 33221 122356889999
Q ss_pred EEeccCCCCHHHHHHHHhcCcccccccccccccccch
Q 003227 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (837)
Q Consensus 258 L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~ 294 (837)
|++++|.++.-.- .+...+++|+.|++++|. ++..
T Consensus 203 L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~-l~~~ 237 (353)
T 2z80_A 203 LILHMKQHILLLE-IFVDVTSSVECLELRDTD-LDTF 237 (353)
T ss_dssp EEEECSCSTTHHH-HHHHHTTTEEEEEEESCB-CTTC
T ss_pred ecCCCCccccchh-hhhhhcccccEEECCCCc-cccc
Confidence 9999998754332 234458999999999987 5553
No 122
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.63 E-value=5.2e-10 Score=131.80 Aligned_cols=175 Identities=19% Similarity=0.188 Sum_probs=85.9
Q ss_pred CCCcceeeecCcccchHHHH----HcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHH--HHH
Q 003227 102 CMNLQKLRFRGAESADSIIH----LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVK--AIA 175 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~ 175 (837)
+++|++|+|++|.+...+.. ..+++|++|++++|. ++......+...+++|++|+++ ++ .++..... ...
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls--~n-~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLS--AN-SISGANVVGWVLS 174 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECC--SS-CCEEETHHHHHHT
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECC--CC-ccCCcCChhhhhh
Confidence 35566666666654432211 255666666666653 1110001111345666666664 23 33221111 123
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh-HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCC
Q 003227 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (837)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~ 254 (837)
..+++|++|+++++ .+++.. .+ ..+++|++|++++|...+. ..+..+++|++|++++|. ++... ......+++
T Consensus 175 ~~l~~L~~L~Ls~n-~l~~~~--~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~l~~ 248 (768)
T 3rgz_A 175 DGCGELKHLAISGN-KISGDV--DV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-LSGDF-SRAISTCTE 248 (768)
T ss_dssp TCCTTCCEEECCSS-EEESCC--BC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC-CCSCH-HHHTTTCSS
T ss_pred ccCCCCCEEECCCC-cccccC--Cc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc-CCCcc-cHHHhcCCC
Confidence 45666677766665 232210 01 3456777777776633221 225666777777777653 33222 222345677
Q ss_pred ccEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 255 L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
|++|++++|.++...-. ..+++|++|++++|.
T Consensus 249 L~~L~Ls~n~l~~~~~~---~~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPP---LPLKSLQYLSLAENK 280 (768)
T ss_dssp CCEEECCSSCCEESCCC---CCCTTCCEEECCSSE
T ss_pred CCEEECCCCcccCccCc---cccCCCCEEECcCCc
Confidence 77777777654311000 046677777777765
No 123
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.62 E-value=8e-10 Score=121.27 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=5.4
Q ss_pred Ccccccccccccc
Q 003227 277 SKSLKVLCALNCP 289 (837)
Q Consensus 277 ~~~L~~l~l~~c~ 289 (837)
+++|+.|++++++
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 3344444444433
No 124
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.62 E-value=1.1e-09 Score=120.60 Aligned_cols=12 Identities=17% Similarity=-0.014 Sum_probs=5.8
Q ss_pred CCCccEEecCCC
Q 003227 124 ARNLRELSGDYC 135 (837)
Q Consensus 124 ~~~L~~L~l~~c 135 (837)
+++|++|++++|
T Consensus 98 l~~L~~L~Ls~n 109 (452)
T 3zyi_A 98 LHHLEVLQLGRN 109 (452)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 444555555444
No 125
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.61 E-value=2.9e-08 Score=103.11 Aligned_cols=181 Identities=20% Similarity=0.194 Sum_probs=116.6
Q ss_pred CCcceeeecCcccchHHHH-----HcCCCccEEecCCCCCCCHHHHHHHH-hcCCCCCeEEeCCCCCCCCCH----HHHH
Q 003227 103 MNLQKLRFRGAESADSIIH-----LQARNLRELSGDYCRKITDATLSVIV-ARHEALESLQLGPDFCERITS----DAVK 172 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~-----~~~~~L~~L~l~~c~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~----~~l~ 172 (837)
..++.+.+.++...+..+. ..+++|++|++++|. ++......+. ..+++|++|++++ + .++. ....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~--n-~i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRN--V-SWATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEES--C-CCSSTTSSHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeec--c-cccchhhhhHHH
Confidence 4578888888876543221 145789999999986 3322111111 5678999999962 3 4442 1112
Q ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHh------hCCCCCCEeeccCCCCCC--HHH
Q 003227 173 AIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL------GNVLSVRFLSVAGTSNMK--WGV 244 (837)
Q Consensus 173 ~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l------~~l~~L~~L~ls~~~~i~--~~~ 244 (837)
.+. .+++|++|+++++ .++..... ....+++|++|++++|...++.++ ..+++|++|++++|. ++ ...
T Consensus 140 ~~~-~~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~ 215 (310)
T 4glp_A 140 QQW-LKPGLKVLSIAQA-HSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGV 215 (310)
T ss_dssp HTT-BCSCCCEEEEECC-SSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHH
T ss_pred Hhh-hccCCCEEEeeCC-CcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHH
Confidence 223 6899999999988 45432211 223568999999999955554433 578899999999984 44 222
Q ss_pred HHHHHhcCCCccEEEeccCCCCHHHHHHHHhcC---cccccccccccccccc
Q 003227 245 VSQVWHKLPKLVGLDVSRTDVGPITISRLLTSS---KSLKVLCALNCPVLEE 293 (837)
Q Consensus 245 l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~---~~L~~l~l~~c~~i~~ 293 (837)
...+...+++|++|++++|.+++..-..+ ..+ ++|++|++++|. ++.
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-l~~ 265 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAG-LEQ 265 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSC-CCS
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCC-CCc
Confidence 23345678999999999987764311111 123 699999999887 664
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.60 E-value=1.2e-08 Score=111.74 Aligned_cols=182 Identities=16% Similarity=0.079 Sum_probs=105.5
Q ss_pred cccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCC
Q 003227 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (837)
Q Consensus 81 ~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~ 160 (837)
+.++++...++.- . ...+++|+.|++++|...... -..+++|++|++++|. ++.- . ...+++|++|++++
T Consensus 67 ~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~-l~~l--~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 67 TKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNK-LTKL--D--VSQNPLLTYLNCAR 136 (457)
T ss_dssp SEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSC-CSCC--C--CTTCTTCCEEECTT
T ss_pred CEEEccCCcCCeE--c--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCc-CCee--c--CCCCCcCCEEECCC
Confidence 4555555433321 1 234567777777777554321 2256777777777765 4331 1 34567777777752
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCC
Q 003227 161 DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240 (837)
Q Consensus 161 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i 240 (837)
+ .++... ...+++|++|+++++..++... ...+++|++|++++| .++.-.+..+++|++|++++|. +
T Consensus 137 --N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~-l 203 (457)
T 3bz5_A 137 --N-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNN-I 203 (457)
T ss_dssp --S-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSC-C
T ss_pred --C-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCc-C
Confidence 2 333311 2346777777777774443321 224577777777777 4444446677777777777763 3
Q ss_pred CHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccch
Q 003227 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (837)
Q Consensus 241 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~ 294 (837)
+... ...+++|+.|++++|.++.-. ...+++|+.|++++|. ++..
T Consensus 204 ~~~~----l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~-l~~~ 248 (457)
T 3bz5_A 204 TKLD----LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNP-LTEL 248 (457)
T ss_dssp SCCC----CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCC
T ss_pred Ceec----cccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCc-CCCc
Confidence 3221 345677777777777665421 2346777777777775 5443
No 127
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.60 E-value=2.6e-09 Score=122.72 Aligned_cols=178 Identities=16% Similarity=0.106 Sum_probs=97.2
Q ss_pred HhCCCcceeeecCcccchHH----HHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHH
Q 003227 100 SRCMNLQKLRFRGAESADSI----IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIA 175 (837)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 175 (837)
..+++|+.|+++++...... .-..+++|++|++++|. ++.. .......+++|++|+++ ++ .+.........
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~--~n-~l~~~~~~~~~ 421 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSL-KTEAFKECPQLELLDLA--FT-RLKVKDAQSPF 421 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEE-CTTTTTTCTTCSEEECT--TC-CEECCTTCCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcC-CHHHhcCCccCCeEECC--CC-cCCCcccchhh
Confidence 35678888888887654321 12256788888888765 2211 11123456778888875 23 22211111112
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh------HHhhCCCCCCEeeccCCCCCCHHHHHHHH
Q 003227 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE------VALGNVLSVRFLSVAGTSNMKWGVVSQVW 249 (837)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~------~~l~~l~~L~~L~ls~~~~i~~~~l~~~~ 249 (837)
..+++|+.|+++++ .++...... ...+|+|++|++++|. +++ ..+..+++|++|++++|. ++.... ...
T Consensus 422 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~ 496 (606)
T 3t6q_A 422 QNLHLLKVLNLSHS-LLDISSEQL-FDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ-HAF 496 (606)
T ss_dssp TTCTTCCEEECTTC-CCBTTCTTT-TTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT-TTT
T ss_pred hCcccCCEEECCCC-ccCCcCHHH-HhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccCh-hhh
Confidence 34677777777776 443322121 2245777777777773 333 235667777777777763 322111 112
Q ss_pred hcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 250 HKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 250 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
..+++|+.|++++|.++......+ ..++.| .|++++|.
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEAL-SHLKGI-YLNLASNH 534 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGG-TTCCSC-EEECCSSC
T ss_pred ccccCCCEEECCCCccCcCChhHh-Cccccc-EEECcCCc
Confidence 456777777777776654433222 235666 66666665
No 128
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.59 E-value=2.7e-09 Score=117.50 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=63.4
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~ 253 (837)
++++|++|+++++ .+++- .. ...+++|++|++++|. ++. ..+..+++|++|++++|. ++.... .....++
T Consensus 194 ~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~ 266 (452)
T 3zyi_A 194 GLFNLKYLNLGMC-NIKDM--PN-LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQ-VSLIER-NAFDGLA 266 (452)
T ss_dssp TCTTCCEEECTTS-CCSSC--CC-CTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSC-CCEECT-TTTTTCT
T ss_pred CCCCCCEEECCCC-ccccc--cc-ccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCc-CceECH-HHhcCCC
Confidence 4566666666665 33321 11 2235677777777763 332 456677777777777663 322111 1134567
Q ss_pred CccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchhHHHH
Q 003227 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISA 299 (837)
Q Consensus 254 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~~~~~ 299 (837)
+|+.|+|++|.++.-.. .....+++|+.|++++++-.-|..+..+
T Consensus 267 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp TCCEEECCSSCCSCCCT-TSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred CCCEEECCCCcCCccCh-HHhccccCCCEEEccCCCcCCCCCchHH
Confidence 78888888776542111 1122467788888877774444443333
No 129
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.59 E-value=2.4e-08 Score=112.88 Aligned_cols=166 Identities=19% Similarity=0.151 Sum_probs=117.7
Q ss_pred cccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCC
Q 003227 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (837)
Q Consensus 81 ~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~ 160 (837)
+.+++++..+..- .. ...+++|+.|+|++|..........+++|+.|+|++|. ++. +. ....+++|+.|+|+
T Consensus 46 ~~L~l~~n~i~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~--l~-~l~~l~~L~~L~Ls- 117 (605)
T 1m9s_A 46 DQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK-IKD--LS-SLKDLKKLKSLSLE- 117 (605)
T ss_dssp CCCBCTTCCCCCC--TT-GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCC--CT-TSTTCTTCCEEECT-
T ss_pred CEEECcCCCCCCC--hH-HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC-CCC--Ch-hhccCCCCCEEEec-
Confidence 4556655443321 11 35679999999999976543334479999999999986 443 12 24568999999996
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCC
Q 003227 161 DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240 (837)
Q Consensus 161 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i 240 (837)
.| .+.. +.. ...+++|+.|+|++| .+++. . ....+++|++|+|++|.......+..+++|+.|+|++| .+
T Consensus 118 -~N-~l~~--l~~-l~~l~~L~~L~Ls~N-~l~~l--~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~i 187 (605)
T 1m9s_A 118 -HN-GISD--ING-LVHLPQLESLYLGNN-KITDI--T-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HI 187 (605)
T ss_dssp -TS-CCCC--CGG-GGGCTTCSEEECCSS-CCCCC--G-GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CC
T ss_pred -CC-CCCC--Ccc-ccCCCccCEEECCCC-ccCCc--h-hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCC-CC
Confidence 34 4443 222 346899999999998 56553 2 33467999999999995444455889999999999998 45
Q ss_pred CHHHHHHHHhcCCCccEEEeccCCCCH
Q 003227 241 KWGVVSQVWHKLPKLVGLDVSRTDVGP 267 (837)
Q Consensus 241 ~~~~l~~~~~~~~~L~~L~l~~~~i~~ 267 (837)
++. . -...+++|+.|+|++|.+..
T Consensus 188 ~~l--~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 188 SDL--R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CBC--G-GGTTCTTCSEEECCSEEEEC
T ss_pred CCC--h-HHccCCCCCEEEccCCcCcC
Confidence 442 2 24678999999999986643
No 130
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.59 E-value=1.1e-08 Score=113.06 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCCccEEEeccCCCCHHHHHHHHh
Q 003227 252 LPKLVGLDVSRTDVGPITISRLLT 275 (837)
Q Consensus 252 ~~~L~~L~l~~~~i~~~~l~~l~~ 275 (837)
+++|++|++++|.++......+..
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cceeeeEecCCCcccccchhhhhc
Confidence 467888888888777655554433
No 131
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.59 E-value=2.3e-09 Score=108.92 Aligned_cols=196 Identities=16% Similarity=0.114 Sum_probs=125.0
Q ss_pred cccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeE
Q 003227 79 LWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESL 156 (837)
Q Consensus 79 ~~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L 156 (837)
.|+.++++...++. +.. ...+++++|+++++....... -..+++|++|+++++. ++.- ...+...+++|++|
T Consensus 17 ~~~~l~~~~~~l~~--ip~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i-~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA--IPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTL-PAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCSS--CCS--CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCC-CTTTTSSCTTCCEE
T ss_pred CCCEEEccCCCCCc--cCC--CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCee-ChhhhcCCCCCCEE
Confidence 45667776644332 000 112579999999986653221 1267899999999976 3321 11223568999999
Q ss_pred EeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEee
Q 003227 157 QLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLS 233 (837)
Q Consensus 157 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ 233 (837)
++++ + .++.... .....+++|++|+++++ .++..... ....+++|++|++++|. ++. ..+..+++|++|+
T Consensus 91 ~l~~--n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 91 WVTD--N-KLQALPI-GVFDQLVNLAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp ECCS--S-CCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred ECCC--C-cCCcCCH-hHcccccCCCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeE
Confidence 9962 3 4432111 12345899999999987 44432111 22457999999999984 443 3478899999999
Q ss_pred ccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccccccccccc
Q 003227 234 VAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (837)
Q Consensus 234 ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~ 290 (837)
+++|. ++... ......+++|++|++++|.++.-.- .....+++|+.|++++++-
T Consensus 164 L~~n~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 164 LYNNQ-LKRVP-EGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSC-CSCCC-TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred ecCCc-CcEeC-hhHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCe
Confidence 99873 33211 1123568999999999987652211 1223588999999999873
No 132
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.59 E-value=5.5e-08 Score=110.16 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=34.8
Q ss_pred CccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccc
Q 003227 206 NLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCA 285 (837)
Q Consensus 206 ~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l 285 (837)
+|++|++++| .++.. ...+++|++|++++| .++ .+.. ...+++|+.|++++|.++...- .....+++|+.|++
T Consensus 432 ~L~~L~Ls~N-~l~~~-~~~l~~L~~L~Ls~N-~l~--~ip~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l 504 (549)
T 2z81_A 432 TLEVLDVSNN-NLDSF-SLFLPRLQELYISRN-KLK--TLPD-ASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWL 504 (549)
T ss_dssp TCSEEECCSS-CCSCC-CCCCTTCCEEECCSS-CCS--SCCC-GGGCTTCCEEECCSSCCCCCCT-TGGGGCTTCCEEEC
T ss_pred CceEEECCCC-Chhhh-cccCChhcEEECCCC-ccC--cCCC-cccCccCCEEecCCCccCCcCH-HHHhcCcccCEEEe
Confidence 4444444444 22221 134556666666655 222 1111 1235566666666655432110 11123566666666
Q ss_pred cccc
Q 003227 286 LNCP 289 (837)
Q Consensus 286 ~~c~ 289 (837)
++|+
T Consensus 505 ~~N~ 508 (549)
T 2z81_A 505 HTNP 508 (549)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 6665
No 133
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.58 E-value=1.4e-07 Score=106.95 Aligned_cols=171 Identities=15% Similarity=0.100 Sum_probs=75.0
Q ss_pred CCCcceeeecCcccch--HHHHHcCCCccEEecCCCCCCCHHHHHHH--HhcCCCCCeEEeCCCCCCCCCHHH-HHHHHh
Q 003227 102 CMNLQKLRFRGAESAD--SIIHLQARNLRELSGDYCRKITDATLSVI--VARHEALESLQLGPDFCERITSDA-VKAIAL 176 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~c~~~~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~ 176 (837)
.++|+.|+++++.... ..+...+++|++|++++|. ++....... ...+++|+.|+++ ++ .++... ......
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls--~N-~l~~~~~~~~~~~ 384 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLS--QN-HLRSMQKTGEILL 384 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECT--TS-CCCCHHHHHHHGG
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEcc--CC-cccccccchhhhh
Confidence 3455555555553321 1111235556666665554 443222111 2334556666653 22 332211 112233
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCcc
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~ 256 (837)
.+++|++|+++++ .++ .+......+++|++|++++|. ++.-.-.-.++|++|++++| .++. +...+++|+
T Consensus 385 ~l~~L~~L~Ls~N-~l~--~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l~~-----~~~~l~~L~ 454 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFH--PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDS-----FSLFLPRLQ 454 (549)
T ss_dssp GCTTCCEEECTTC-CCC--CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CCSC-----CCCCCTTCC
T ss_pred cCCCCCEEECCCC-CCc--cCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC-Chhh-----hcccCChhc
Confidence 4555666666555 333 111112234555666665552 32211011245666666655 2221 113556666
Q ss_pred EEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 257 ~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
.|++++|.++ .+... ..+++|+.|++++|.
T Consensus 455 ~L~Ls~N~l~--~ip~~-~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 455 ELYISRNKLK--TLPDA-SLFPVLLVMKISRNQ 484 (549)
T ss_dssp EEECCSSCCS--SCCCG-GGCTTCCEEECCSSC
T ss_pred EEECCCCccC--cCCCc-ccCccCCEEecCCCc
Confidence 6666666543 11111 235666666666654
No 134
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.58 E-value=1.4e-08 Score=102.30 Aligned_cols=147 Identities=17% Similarity=0.152 Sum_probs=106.3
Q ss_pred hCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 101 RCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
.+++|+.|+++++.......-..+++|++|++++|. +++.. . ...+++|++|++++ + .++. +..+. . ++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~-i~~~~--~-l~~l~~L~~L~L~~--N-~l~~--l~~~~-~-~~ 107 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-ISDLS--P-LKDLTKLEELSVNR--N-RLKN--LNGIP-S-AC 107 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCG--G-GTTCSSCCEEECCS--S-CCSC--CTTCC-C-SS
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc-cCCCh--h-hccCCCCCEEECCC--C-ccCC--cCccc-c-Cc
Confidence 358899999999866532222368999999999986 54322 1 56789999999963 3 4433 11122 2 89
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEe
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l 260 (837)
|++|+++++ .+++- .. ...+++|++|++++|..-+-..+..+++|++|++++| .+++. .....+++|+.|++
T Consensus 108 L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 108 LSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDL 179 (263)
T ss_dssp CCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEE
T ss_pred ccEEEccCC-ccCCC--hh-hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeC
Confidence 999999998 56552 23 3457999999999995333367889999999999997 44443 33467899999999
Q ss_pred ccCCCC
Q 003227 261 SRTDVG 266 (837)
Q Consensus 261 ~~~~i~ 266 (837)
++|.++
T Consensus 180 ~~N~~~ 185 (263)
T 1xeu_A 180 TGQKCV 185 (263)
T ss_dssp EEEEEE
T ss_pred CCCccc
Confidence 997654
No 135
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.58 E-value=9.4e-09 Score=107.98 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=93.3
Q ss_pred CCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHH-HHHHhcCCC
Q 003227 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAV-KAIALCCPK 180 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~~~~~ 180 (837)
+++|++|+++++.... +.....++|++|++++|. ++... ......+++|+.|+++ .+ .+...++ ......+++
T Consensus 99 l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~--~n-~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 99 LVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENE-ITKVR-KSVFNGLNQMIVVELG--TN-PLKSSGIENGAFQGMKK 172 (330)
T ss_dssp CTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSC-CCBBC-HHHHTTCTTCCEEECC--SS-CCCGGGBCTTGGGGCTT
T ss_pred CCCCCEEECCCCcCCc-cChhhcccccEEECCCCc-ccccC-HhHhcCCccccEEECC--CC-cCCccCcChhhccCCCC
Confidence 4556666666554331 111122566666666654 22211 1123456677777774 22 3322111 112234677
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccE
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~ 257 (837)
|++|+++++ .++. +. ....++|++|++++|. +++ ..+..+++|++|++++|. ++..... ....+++|+.
T Consensus 173 L~~L~l~~n-~l~~--l~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~ 244 (330)
T 1xku_A 173 LSYIRIADT-NITT--IP--QGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNG-SLANTPHLRE 244 (330)
T ss_dssp CCEEECCSS-CCCS--CC--SSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTT-TGGGSTTCCE
T ss_pred cCEEECCCC-cccc--CC--ccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeChh-hccCCCCCCE
Confidence 777777766 3332 00 0112677777777773 433 456777888888888763 3322111 2345778888
Q ss_pred EEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 258 L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
|++++|.++ .+......+++|+.|++++|. ++..+
T Consensus 245 L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 245 LHLNNNKLV--KVPGGLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp EECCSSCCS--SCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred EECCCCcCc--cCChhhccCCCcCEEECCCCc-CCccC
Confidence 888887665 111112347788888888776 65544
No 136
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.57 E-value=7.9e-10 Score=127.10 Aligned_cols=206 Identities=20% Similarity=0.159 Sum_probs=133.1
Q ss_pred ccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHH---HHHcCCCccEEecCCCCCCCHHH-HHHHHhcCCCCCe
Q 003227 80 WSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSI---IHLQARNLRELSGDYCRKITDAT-LSVIVARHEALES 155 (837)
Q Consensus 80 ~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~c~~~~~~~-l~~~~~~~~~L~~ 155 (837)
.+.++++...+.... ......+++|++|++++|...... .-..+++|++|++++|. ++... .......+++|++
T Consensus 303 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 303 LKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp CCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCE
T ss_pred CCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCE
Confidence 356666665444211 122346789999999998654221 12268999999999986 43211 0122456899999
Q ss_pred EEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC--hHHhhCCCCCCEee
Q 003227 156 LQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD--EVALGNVLSVRFLS 233 (837)
Q Consensus 156 L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~l~~l~~L~~L~ 233 (837)
|+++ ++ .+..... .....+++|++|+++++ .++..........+++|++|++++|.... ...+..+++|++|+
T Consensus 381 L~l~--~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 381 LNLS--YN-EPLSLKT-EAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp EECC--SC-SCEEECT-TTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred EECC--CC-cCCcCCH-HHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 9996 34 3322111 12245899999999998 44432222223467999999999994322 24578899999999
Q ss_pred ccCCCCCCHHHH--HHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 234 VAGTSNMKWGVV--SQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 234 ls~~~~i~~~~l--~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
+++|. +++..+ ......+++|+.|++++|.++...... ...+++|+.|++++|. ++...
T Consensus 456 L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~ 516 (606)
T 3t6q_A 456 LQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FTSLKMMNHVDLSHNR-LTSSS 516 (606)
T ss_dssp CTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CCGGG
T ss_pred CCCCC-CCccccccchhhccCCCccEEECCCCccCccChhh-hccccCCCEEECCCCc-cCcCC
Confidence 99984 332111 122467899999999998776322111 2358999999999997 76655
No 137
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.55 E-value=5.4e-10 Score=127.50 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=33.3
Q ss_pred CCCccEEEecCCCCCC--hHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccc
Q 003227 204 CPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~--~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 281 (837)
+++|++|++++|...+ ...+..+++|++|++++|. +++..+......+++|+.|++++|.++...... ...+++|+
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~ 497 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQ 497 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCC
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhh-hhcccCCC
Confidence 4555555555542111 1233444555555555442 111111112233455555555554443211111 11245555
Q ss_pred cccccccc
Q 003227 282 VLCALNCP 289 (837)
Q Consensus 282 ~l~l~~c~ 289 (837)
.|++++|.
T Consensus 498 ~L~l~~n~ 505 (570)
T 2z63_A 498 VLNMASNQ 505 (570)
T ss_dssp EEECCSSC
T ss_pred EEeCCCCc
Confidence 55555543
No 138
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.54 E-value=5.8e-09 Score=119.09 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=41.7
Q ss_pred hCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcc
Q 003227 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~ 279 (837)
.+|+|++|++++|. ++. ..+..+++|++|++++|. ++. +......+++|+.|+|++|.++. +..-...+++
T Consensus 252 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~ 325 (597)
T 3oja_B 252 NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDR 325 (597)
T ss_dssp GCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTT
T ss_pred cCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCCCCCc--cCcccccCCC
Confidence 35666666666663 332 345566666666666652 221 11112345667777776665541 1111123566
Q ss_pred cccccccccc
Q 003227 280 LKVLCALNCP 289 (837)
Q Consensus 280 L~~l~l~~c~ 289 (837)
|+.|++++|.
T Consensus 326 L~~L~L~~N~ 335 (597)
T 3oja_B 326 LENLYLDHNS 335 (597)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECCCCC
Confidence 6666666665
No 139
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.54 E-value=1e-08 Score=107.79 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=49.2
Q ss_pred cCCCCCEEEecCCCCCCHHHH-HHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCc
Q 003227 177 CCPKLKKLRLSGIRDICGDAI-NALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L 255 (837)
.+++|+.|+++++ .++..++ ......+++|++|++++| .++.-.....++|++|++++|. ++.... .....+++|
T Consensus 143 ~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L 218 (330)
T 1xku_A 143 GLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNK-ITKVDA-ASLKGLNNL 218 (330)
T ss_dssp TCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSC-CCEECT-GGGTTCTTC
T ss_pred CCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCc-CCccCH-HHhcCCCCC
Confidence 3555555555555 2322110 111223455666665555 2332111122556666666552 322211 112346667
Q ss_pred cEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 256 ~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
+.|++++|.++..... ....+++|+.|++++|.
T Consensus 219 ~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 219 AKLGLSFNSISAVDNG-SLANTPHLRELHLNNNK 251 (330)
T ss_dssp CEEECCSSCCCEECTT-TGGGSTTCCEEECCSSC
T ss_pred CEEECCCCcCceeChh-hccCCCCCCEEECCCCc
Confidence 7777766655422111 11235667777776665
No 140
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.54 E-value=1.8e-09 Score=124.05 Aligned_cols=180 Identities=17% Similarity=0.100 Sum_probs=95.9
Q ss_pred hCCCcceeeecCcccchH----HHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHh
Q 003227 101 RCMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 176 (837)
.+++|+.|+++++..... .....+++|++|++++|. ++. +......+++|++|+++ ++ .+..........
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~--~n-~l~~~~~~~~~~ 421 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQ--HS-TLKRVTEFSAFL 421 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECT--TS-EEESTTTTTTTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-ccc--chhhccCCCCCCeeECC--CC-ccCCccChhhhh
Confidence 457788888887755421 223367788888888765 221 11223346777777774 23 222211101223
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh----HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~ 252 (837)
.+++|++|+++++ .++..... ....+++|++|++++| .+++ ..+..+++|++|++++| .++... ......+
T Consensus 422 ~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l 496 (606)
T 3vq2_A 422 SLEKLLYLDISYT-NTKIDFDG-IFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS-WGVFDTL 496 (606)
T ss_dssp TCTTCCEEECTTS-CCEECCTT-TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTC
T ss_pred ccccCCEEECcCC-CCCccchh-hhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccC-hhhhccc
Confidence 4677777777776 33321111 1234577777777776 3333 23456677777777766 232211 1112456
Q ss_pred CCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccc
Q 003227 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (837)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~ 293 (837)
++|+.|++++|.++..... ....+++|+.|++++|. ++.
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~ 535 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNR-IET 535 (606)
T ss_dssp TTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSC-CCC
T ss_pred ccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCc-Ccc
Confidence 6777777777655432111 11236667777777665 443
No 141
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.53 E-value=5.7e-09 Score=112.54 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=33.1
Q ss_pred HhCCCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeC
Q 003227 100 SRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLG 159 (837)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~ 159 (837)
..+++|+.|+++++....... -..+++|++|++++|. ++... ......+++|++|+++
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQLS 173 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCC-TTTTSSCTTCCEEECC
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccC-hhhccCCCCCCEEECC
Confidence 345677777777775542211 1246778888887765 32211 1112456778888885
No 142
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.53 E-value=4.6e-09 Score=116.34 Aligned_cols=152 Identities=11% Similarity=0.118 Sum_probs=108.7
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh
Q 003227 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 202 (837)
.+++|++|++++|. ++... ......+++|+.|+++ .+.++......+...+++|++|+|+++ .+++. ....
T Consensus 118 ~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls---~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~~- 188 (487)
T 3oja_A 118 RGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLK---LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQV- 188 (487)
T ss_dssp CCSSCEEEECCSSC-CCSGG-GBCGGGGSSEEEEECT---TSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCC-
T ss_pred ccCCCCEEECCCCC-CCCCC-chhhcCCCCCCEEECC---CCCCCCcChHHHhhhCCcccEEecCCC-ccccc--cccc-
Confidence 46788899998876 44321 1123458999999996 335655444455556899999999998 55532 1122
Q ss_pred hCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccc
Q 003227 203 LCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L 280 (837)
.+++|++|++++| .++. ..+..+++|+.|++++|. ++. +......+++|+.|++++|.+....+..+...++.|
T Consensus 189 ~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 189 VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-Ccc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 4799999999999 4554 347889999999999974 432 222245678999999999999876776777778888
Q ss_pred ccccccc
Q 003227 281 KVLCALN 287 (837)
Q Consensus 281 ~~l~l~~ 287 (837)
+.+++..
T Consensus 265 ~~l~~~~ 271 (487)
T 3oja_A 265 QTVAKQT 271 (487)
T ss_dssp HHHHHHH
T ss_pred cEEeccc
Confidence 8887753
No 143
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.53 E-value=3.5e-08 Score=89.91 Aligned_cols=81 Identities=28% Similarity=0.372 Sum_probs=40.8
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh----HHhhCCCCCCEeeccCCCCCCHHHH--HHHHh
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVV--SQVWH 250 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~l~~l~~L~~L~ls~~~~i~~~~l--~~~~~ 250 (837)
.+++|++|+++++ .+++. +......+++|++|++++|. +++ ..+..+++|++|++++|. ++.... .....
T Consensus 62 ~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~ 137 (149)
T 2je0_A 62 KLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFK 137 (149)
T ss_dssp CCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHH
T ss_pred cCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHH
Confidence 3556666666655 34332 22333345666666666663 333 234556666666666652 222111 12344
Q ss_pred cCCCccEEEec
Q 003227 251 KLPKLVGLDVS 261 (837)
Q Consensus 251 ~~~~L~~L~l~ 261 (837)
.+++|+.|+++
T Consensus 138 ~l~~L~~L~l~ 148 (149)
T 2je0_A 138 LLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEETTB
T ss_pred HCCCcccccCC
Confidence 56666666654
No 144
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.53 E-value=3.8e-09 Score=115.84 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=15.8
Q ss_pred CCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCC
Q 003227 204 CPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGT 237 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~ 237 (837)
+++|++|++++|..++. ..+..+++|++|++++|
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 45555555554433322 23444555555555544
No 145
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.52 E-value=3.9e-09 Score=124.32 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=24.9
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC--hHHhhCCCCCCEeeccCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGT 237 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~l~~l~~L~~L~ls~~ 237 (837)
.+++|++|+++++ .++.. +.. ...+++|++|++++|...+ ...+..+++|++|++++|
T Consensus 198 ~l~~L~~L~Ls~n-~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 198 RCVNLEFLDVSSN-NFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp TCTTCCEEECCSS-CCCSC-CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred cCCcCCEEECcCC-cCCCC-Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 3455555555554 22211 111 2234555555555552211 133445555555555554
No 146
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.52 E-value=9.3e-09 Score=114.20 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=66.7
Q ss_pred hCCCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC
Q 003227 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~ 178 (837)
.+++|+.|+|+++....... -..+++|++|++++|. ++.. .......+++|++|++++ + .+....... ...+
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~l~~--n-~l~~~~~~~-~~~l 151 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVIL-LDYMFQDLYNLKSLEVGD--N-DLVYISHRA-FSGL 151 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEEECC--T-TCCEECTTS-STTC
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccC-ChhHccccccCCEEECCC--C-ccceeChhh-ccCC
Confidence 45667777777664432111 1246677777777664 2211 011124567777777742 2 232211111 1346
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCC
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTS 238 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~ 238 (837)
++|++|+++++ .++...... ...+++|++|++++|. ++. ..+..+++|++|++++|.
T Consensus 152 ~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 152 NSLEQLTLEKC-NLTSIPTEA-LSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp TTCCEEEEESC-CCSSCCHHH-HTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCT
T ss_pred CCCCEEECCCC-cCcccChhH-hcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCc
Confidence 77777777776 443322122 2346777777777763 322 235566666666666654
No 147
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.51 E-value=1e-08 Score=105.02 Aligned_cols=181 Identities=14% Similarity=0.062 Sum_probs=117.5
Q ss_pred CCcceeeecCcccchHH--HHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
++++.|+++++...... .-..+++|++|+++++. ++.-.. ...+++|++|++++ + .++. +......+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~Ls~--N-~l~~--l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV---DGTLPVLGTLDLSH--N-QLQS--LPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC---CSCCTTCCEEECCS--S-CCSS--CCCCTTTCTT
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC---CCCCCcCCEEECCC--C-cCCc--CchhhccCCC
Confidence 57899999988665322 12267899999999876 443111 14688999999963 2 4431 2222356889
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccE
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~ 257 (837)
|++|+++++ .++.-... ....+++|++|++++|. ++. ..+..+++|+.|++++|. ++.-. ..+...+++|+.
T Consensus 102 L~~L~l~~N-~l~~l~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~-~~~~~~l~~L~~ 176 (290)
T 1p9a_G 102 LTVLDVSFN-RLTSLPLG-ALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN-LTELP-AGLLNGLENLDT 176 (290)
T ss_dssp CCEEECCSS-CCCCCCSS-TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CSCCC-TTTTTTCTTCCE
T ss_pred CCEEECCCC-cCcccCHH-HHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-CCccC-HHHhcCcCCCCE
Confidence 999999988 45431111 12356899999999984 433 346788999999999873 33211 123356889999
Q ss_pred EEeccCCCCHHHHHHHHhcCcccccccccccccccchhHHHH
Q 003227 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISA 299 (837)
Q Consensus 258 L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~~~~~ 299 (837)
|++++|.++. +..-....++|+.|++.+++-.-+..+..+
T Consensus 177 L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l 216 (290)
T 1p9a_G 177 LLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWLCNCEILYF 216 (290)
T ss_dssp EECCSSCCCC--CCTTTTTTCCCSEEECCSCCBCCSGGGHHH
T ss_pred EECCCCcCCc--cChhhcccccCCeEEeCCCCccCcCccHHH
Confidence 9999987651 111122467899999998885445554444
No 148
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.51 E-value=1.3e-08 Score=95.10 Aligned_cols=133 Identities=15% Similarity=0.163 Sum_probs=92.9
Q ss_pred cCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC-h-HHhhCC
Q 003227 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD-E-VALGNV 226 (837)
Q Consensus 149 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~-~-~~l~~l 226 (837)
..++|++|+++ +| .+++..+......+++|+.|+++++ .+++. . ....+++|++|++++|...+ . ..+..+
T Consensus 22 ~~~~L~~L~l~--~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLD--NC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV--S-NLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECC--SC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC--S-SCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CcccCCEEECC--CC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh--h-hhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 34789999996 34 4543233333456899999999998 56653 2 33457999999999995433 1 345669
Q ss_pred CCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHH--HHHHhcCcccccccccccc
Q 003227 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITI--SRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 227 ~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l--~~l~~~~~~L~~l~l~~c~ 289 (837)
++|++|++++| .+++.........+++|++|++++|.++.... ......+++|+.|++++|.
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999999998 45442211334678999999999987653321 2345579999999999987
No 149
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.49 E-value=1.2e-09 Score=125.55 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=63.6
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC--hHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~ 254 (837)
.+++|+.|+++++ .++...-......+++|++|++++|...+ ...+..+++|++|++++|. +++..+......+++
T Consensus 397 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 397 GLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTN 474 (606)
T ss_dssp TCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTT
T ss_pred CCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCC
Confidence 3566666666665 33222110122345777777777763222 1345677777777777762 322111223356778
Q ss_pred ccEEEeccCCCCHHHHHHHHhcCcccccccccccccccch
Q 003227 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (837)
Q Consensus 255 L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~ 294 (837)
|+.|++++|.++..... ....+++|+.|++++|. +++.
T Consensus 475 L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~ 512 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWG-VFDTLHRLQLLNMSHNN-LLFL 512 (606)
T ss_dssp CCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC-CSCE
T ss_pred CCEEECCCCcCCccChh-hhcccccCCEEECCCCc-CCCc
Confidence 88888888766532111 12347788888888876 5544
No 150
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.48 E-value=5.8e-09 Score=115.91 Aligned_cols=182 Identities=16% Similarity=0.095 Sum_probs=82.5
Q ss_pred hCCCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC
Q 003227 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~ 178 (837)
.+++|+.|+|+++....... -..+++|++|+++++. ++.-. ......+++|++|++++ + .+....- .....+
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~--n-~i~~~~~-~~~~~l 127 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKLDISE--N-KIVILLD-YMFQDL 127 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEEECTT--S-CCCEECT-TTTTTC
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccC-cccccCCCCCCEEECCC--C-ccccCCh-hHcccc
Confidence 34566666666654432211 1145666666666653 22110 01123456666666641 2 2221110 111345
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCc
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L 255 (837)
++|++|+++++ .++......+ ..+++|++|++++|. ++. ..+..+++|+.|++++|. ++... ......+++|
T Consensus 128 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~-~~~~~~l~~L 202 (477)
T 2id5_A 128 YNLKSLEVGDN-DLVYISHRAF-SGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN-INAIR-DYSFKRLYRL 202 (477)
T ss_dssp TTCCEEEECCT-TCCEECTTSS-TTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCC-CCEEC-TTCSCSCTTC
T ss_pred ccCCEEECCCC-ccceeChhhc-cCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCc-CcEeC-hhhcccCccc
Confidence 66666666665 3322111111 235666666666652 222 345666666666666652 21111 0112345666
Q ss_pred cEEEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 256 ~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
+.|+++++........... ...+|+.|++++|. ++...
T Consensus 203 ~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~-l~~~~ 240 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCN-LTAVP 240 (477)
T ss_dssp CEEEEECCTTCCEECTTTT-TTCCCSEEEEESSC-CCSCC
T ss_pred ceeeCCCCccccccCcccc-cCccccEEECcCCc-ccccC
Confidence 6666666532211000111 13367777777765 55444
No 151
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.48 E-value=1.1e-08 Score=110.24 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=6.5
Q ss_pred CCCcceeeecCcc
Q 003227 102 CMNLQKLRFRGAE 114 (837)
Q Consensus 102 ~~~L~~L~l~~~~ 114 (837)
+++|+.|+++++.
T Consensus 68 l~~L~~L~L~~n~ 80 (390)
T 3o6n_A 68 FRQVELLNLNDLQ 80 (390)
T ss_dssp CCCCSEEECTTSC
T ss_pred cccCcEEECCCCc
Confidence 4455555555443
No 152
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.47 E-value=1.6e-09 Score=112.77 Aligned_cols=195 Identities=14% Similarity=0.144 Sum_probs=97.9
Q ss_pred ccccCCCCCcCCH--HHHHHHHHhCCCcceeeecC-cccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCC
Q 003227 80 WSSLDLRAHKCDI--AMAASLASRCMNLQKLRFRG-AESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALE 154 (837)
Q Consensus 80 ~~~l~l~~~~~~~--~~l~~l~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~ 154 (837)
.+.++++...++. .. ......+++|+.|++++ +....... -..+++|++|++++|. ++.. +......+++|+
T Consensus 52 l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~ 128 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGA-IPDFLSQIKTLV 128 (313)
T ss_dssp EEEEEEECCCCSSCEEC-CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEE-CCGGGGGCTTCC
T ss_pred EEEEECCCCCccCCccc-ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCc-CCHHHhCCCCCC
Confidence 4556666544432 11 11234568888888885 44432221 1267888888888765 3211 112234577888
Q ss_pred eEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCC-CccEEEecCCCCCCh---HHhhCCCCCC
Q 003227 155 SLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCP-NLTDIGFLDCLNVDE---VALGNVLSVR 230 (837)
Q Consensus 155 ~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~-~L~~L~l~~~~~~~~---~~l~~l~~L~ 230 (837)
+|+++ ++ .++.. +......+++|++|+++++ .+++.....+.. ++ +|++|++++|. ++. ..+..++ |+
T Consensus 129 ~L~Ls--~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~-l~~~L~~L~L~~N~-l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 129 TLDFS--YN-ALSGT-LPPSISSLPNLVGITFDGN-RISGAIPDSYGS-FSKLFTSMTISRNR-LTGKIPPTFANLN-LA 200 (313)
T ss_dssp EEECC--SS-EEESC-CCGGGGGCTTCCEEECCSS-CCEEECCGGGGC-CCTTCCEEECCSSE-EEEECCGGGGGCC-CS
T ss_pred EEeCC--CC-ccCCc-CChHHhcCCCCCeEECcCC-cccCcCCHHHhh-hhhcCcEEECcCCe-eeccCChHHhCCc-cc
Confidence 88885 23 33211 1111234778888888877 444222222333 34 77777777763 321 3344444 66
Q ss_pred EeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 231 FLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 231 ~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
+|++++|. ++.. .......+++|+.|++++|.++...- . ...+++|++|++++|.
T Consensus 201 ~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 201 FVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLG-K-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp EEECCSSE-EEEC-CGGGCCTTSCCSEEECCSSEECCBGG-G-CCCCTTCCEEECCSSC
T ss_pred EEECcCCc-ccCc-CCHHHhcCCCCCEEECCCCceeeecC-c-ccccCCCCEEECcCCc
Confidence 66666652 1111 01122345566666666654431100 0 1234556666666554
No 153
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.47 E-value=4.8e-08 Score=89.02 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=72.0
Q ss_pred CCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC-h-HHhhCCC
Q 003227 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD-E-VALGNVL 227 (837)
Q Consensus 150 ~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~-~-~~l~~l~ 227 (837)
.++|++|+++ +| .+++..+......+++|+.|+++++ .+++. .....+++|++|++++|...+ . ..+..++
T Consensus 16 ~~~l~~L~l~--~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLD--NS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECT--TC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEcc--CC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 3567777775 23 3432222223345677777777777 45443 222345777777777774332 1 2344577
Q ss_pred CCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHH--HHHHhcCccccccccc
Q 003227 228 SVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITI--SRLLTSSKSLKVLCAL 286 (837)
Q Consensus 228 ~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l--~~l~~~~~~L~~l~l~ 286 (837)
+|++|++++|. +++.........+++|++|++++|.++...- ......+++|+.|+++
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777763 4443222334567777777777765543211 1233346777777765
No 154
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.46 E-value=2.1e-08 Score=113.82 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=121.4
Q ss_pred HHHHHHHHhCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHH-HH
Q 003227 93 AMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSD-AV 171 (837)
Q Consensus 93 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~l 171 (837)
+.+..+... ++|+.|+++++..........+++|++|++++|. ++... ......+++|+.|+++ ++ .++.. .+
T Consensus 322 ~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~--~N-~l~~~~~~ 395 (562)
T 3a79_B 322 EALYSVFAE-MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-FTDSV-FQGCSTLKRLQTLILQ--RN-GLKNFFKV 395 (562)
T ss_dssp HHHHHHHHT-CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTT-TTTCCSCSSCCEEECC--SS-CCCBTTHH
T ss_pred hhhhhhhcc-CcceEEEccCCCcccccCccCCCCceEEECCCCc-cccch-hhhhcccCCCCEEECC--CC-CcCCcccc
Confidence 333333333 5688888888765432221357889999999876 44321 1223567899999995 23 45431 22
Q ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCC-CCCCEeeccCCCCCCHHHHHHHHh
Q 003227 172 KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWH 250 (837)
Q Consensus 172 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l-~~L~~L~ls~~~~i~~~~l~~~~~ 250 (837)
......+++|+.|+++++ .++...-......+++|++|++++| .+++.....+ ++|++|++++| .++. +..-..
T Consensus 396 ~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~~L~~L~L~~N-~l~~--ip~~~~ 470 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLPPKVKVLDLHNN-RIMS--IPKDVT 470 (562)
T ss_dssp HHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCCTTCSEEECCSS-CCCC--CCTTTT
T ss_pred hhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhcCcCCEEECCCC-cCcc--cChhhc
Confidence 233356889999999988 4443111112334688999999998 5666666666 58999999987 4441 211123
Q ss_pred cCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchhHHHH
Q 003227 251 KLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISA 299 (837)
Q Consensus 251 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~~~~~ 299 (837)
.+++|+.|++++|.++.-.- .....+++|+.|++++++-..+..+..+
T Consensus 471 ~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 471 HLQALQELNVASNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp SSCCCSEEECCSSCCCCCCT-TSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred CCCCCCEEECCCCCCCCCCH-HHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 68899999999987652111 1234578899999999885444443333
No 155
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.46 E-value=1.4e-08 Score=115.96 Aligned_cols=35 Identities=17% Similarity=-0.056 Sum_probs=15.6
Q ss_pred CCCcceeeecCcccchHHHH--HcCCCccEEecCCCC
Q 003227 102 CMNLQKLRFRGAESADSIIH--LQARNLRELSGDYCR 136 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~ 136 (837)
+++|+.|+|++|........ ..+++|++|++++|.
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 134 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC
Confidence 34555555555543321111 134555555555543
No 156
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.45 E-value=3.3e-09 Score=120.96 Aligned_cols=178 Identities=13% Similarity=0.100 Sum_probs=107.4
Q ss_pred CCCcceeeecCcccchH----HHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhc
Q 003227 102 CMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~ 177 (837)
+++|+.|+++++..... .....+++|++|++++|. ++... .-...+++|++|+++ ++ .+...........
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~--~~~~~l~~L~~L~l~--~n-~l~~~~~~~~~~~ 419 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS--SNFLGLEQLEHLDFQ--HS-NLKQMSEFSVFLS 419 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEE--EEEETCTTCCEEECT--TS-EEESCTTSCTTTT
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccc--ccccccCCCCEEEcc--CC-ccccccchhhhhc
Confidence 45555555555543311 122245666666666654 21100 002346777777774 23 2221111112346
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh----HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCC
Q 003227 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~ 253 (837)
+++|++|++++| .++... ......+++|++|++++|. +++ ..+..+++|++|++++|. ++.... .....++
T Consensus 420 l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~ 494 (570)
T 2z63_A 420 LRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLS 494 (570)
T ss_dssp CTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCT
T ss_pred CCCCCEEeCcCC-cccccc-hhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCc-cccCCh-hhhhccc
Confidence 889999999988 443321 1223457999999999994 443 356789999999999984 443221 2235689
Q ss_pred CccEEEeccCCCCHHHHHHHHhcCcccccccccccccc
Q 003227 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (837)
Q Consensus 254 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i 291 (837)
+|++|++++|.++.... .....+++|+.|++++|+.-
T Consensus 495 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPD-GIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEeCCCCcCCCCCH-HHhhcccCCcEEEecCCccc
Confidence 99999999987653221 12235899999999999843
No 157
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.44 E-value=2.9e-09 Score=108.77 Aligned_cols=176 Identities=15% Similarity=0.042 Sum_probs=81.9
Q ss_pred CCCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCC
Q 003227 102 CMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~ 179 (837)
+++|+.|+++++....... -..+++|++|+++++. ++.... .....+++|++|++++ + .+....-.. ...++
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~--n-~l~~~~~~~-~~~l~ 124 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVE--T-NLASLENFP-IGHLK 124 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTT--S-CCCCSTTCC-CTTCT
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccCh-hhhcCCccccEEECCC--C-CccccCchh-cccCC
Confidence 4566666666664432111 1145666666666654 221110 1123456666666641 2 222111000 22456
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCC----EeeccCCCCCCHHHHHHHHhcC
Q 003227 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVR----FLSVAGTSNMKWGVVSQVWHKL 252 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~----~L~ls~~~~i~~~~l~~~~~~~ 252 (837)
+|++|+++++ .++...+......+++|++|++++| .++. ..+..+++|+ +|++++|. ++... .-....
T Consensus 125 ~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~--~~~~~~ 199 (276)
T 2z62_A 125 TLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQ--PGAFKE 199 (276)
T ss_dssp TCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEEC--TTSSCS
T ss_pred CCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCCc-ccccC--ccccCC
Confidence 6666666665 3332111112234566666666666 2332 2333333333 56666552 22111 001123
Q ss_pred CCccEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
.+|+.|++++|.++.-.. .+...+++|+.|++++++
T Consensus 200 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSC
T ss_pred CcccEEECCCCceeecCH-hHhcccccccEEEccCCc
Confidence 368888888776542111 122357778888888776
No 158
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=4.1e-08 Score=115.02 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=85.6
Q ss_pred HHhCCCcceeeecCcccch-----------------HHHHH----cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEE
Q 003227 99 ASRCMNLQKLRFRGAESAD-----------------SIIHL----QARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (837)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~-----------------~~~~~----~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~ 157 (837)
...+++|+.|+|+++.+.. .+... .+++|++|++++|.... .+......+++|+.|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--QLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--SCCGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc--cChHHHhCCCCCCEEE
Confidence 3456778888888776554 12211 46778888887775221 1122334577888888
Q ss_pred eCCCCCCCCCH----HHHHHHH---hcCCCCCEEEecCCCCCCHHHHHH--HHhhCCCccEEEecCCCCCCh-HHhhCCC
Q 003227 158 LGPDFCERITS----DAVKAIA---LCCPKLKKLRLSGIRDICGDAINA--LAKLCPNLTDIGFLDCLNVDE-VALGNVL 227 (837)
Q Consensus 158 l~~~~~~~~~~----~~l~~l~---~~~~~L~~L~l~~~~~i~~~~~~~--l~~~~~~L~~L~l~~~~~~~~-~~l~~l~ 227 (837)
++ ++..++. ..+..+. ..+|+|+.|+++++ .++ .+.. ....+++|++|++++|. ++. ..+..++
T Consensus 522 Ls--~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~ 595 (876)
T 4ecn_A 522 IA--CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNV 595 (876)
T ss_dssp CT--TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTS
T ss_pred Cc--CCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCC
Confidence 85 3422543 2222222 34567888887777 454 2222 23346777777777763 332 2445666
Q ss_pred CCCEeeccCCCCCCHHHHHHHHhcCCC-ccEEEeccCCCC
Q 003227 228 SVRFLSVAGTSNMKWGVVSQVWHKLPK-LVGLDVSRTDVG 266 (837)
Q Consensus 228 ~L~~L~ls~~~~i~~~~l~~~~~~~~~-L~~L~l~~~~i~ 266 (837)
+|+.|++++|. ++ .+......+++ |+.|++++|.++
T Consensus 596 ~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 596 KLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp EESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSCCC
T ss_pred cceEEECcCCc-cc--cchHHHhhccccCCEEECcCCCCC
Confidence 67777776653 22 11111234455 666666665543
No 159
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.43 E-value=4.2e-05 Score=80.36 Aligned_cols=326 Identities=15% Similarity=0.051 Sum_probs=206.4
Q ss_pred hHHHHHHhhh-cCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcH-HHHHH-HHhcCChhHHHHHHHHHHHhc
Q 003227 380 GAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGI-RLLLD-LAKSWREGLQSEAAKAIANLS 456 (837)
Q Consensus 380 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i-~~Lv~-lL~~~~~~~~~~a~~~L~~l~ 456 (837)
++..++++|. ...+++.......+..|...++ ........+.+.... ..+.. .+..+++-.+..|..++..++
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~----~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK----YGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 153 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS----SSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc----chHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 4688999995 5677887777777777665543 001223333333222 22332 223344445566666655554
Q ss_pred c----ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCC--HHHHHHHHHhh-------
Q 003227 457 V----NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGG--VKALVDLIFKW------- 522 (837)
Q Consensus 457 ~----~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~--i~~L~~lL~~~------- 522 (837)
. +.+..+.+... +-++..|.. ++...+..++.+|..|...++.|..+.+.++ +++++.++...
T Consensus 154 ~~~~~~~~~l~~l~~~---~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~ 230 (480)
T 1ho8_A 154 QNGLHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 230 (480)
T ss_dssp STTTCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred ccCCccHhHHHHHhhh---HHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence 3 22233333211 135555555 3455677899999999999999999987654 67777666532
Q ss_pred -------CCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcH--HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCC-c-
Q 003227 523 -------SSGGDGVLERAAGALANLAADDKCSMEVALAGGV--HALVMLARSCKFEGVQEQAARALANLAAHGDSNS-N- 591 (837)
Q Consensus 523 -------~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i--~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~- 591 (837)
.....+++.+++.++|-|+.+++..+.+...+.. +.|+..++....+++.+-++.++.|+........ .
T Consensus 231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~ 310 (480)
T 1ho8_A 231 RIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKV 310 (480)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhH
Confidence 1113567899999999999998888888777654 6778888887779999999999999987521110 0
Q ss_pred ccchhhccchHHHHHHHcCC---CCHHHHHHHHHHH-------HhhcCChhhHHHH------------------------
Q 003227 592 NSAVGQEAGALEALVQLTRS---PHEGVRQEAAGAL-------WNLSFDDRNREAI------------------------ 637 (837)
Q Consensus 592 ~~~~~~~~~~i~~L~~lL~~---~~~~~~~~a~~~L-------~~Ls~~~~~~~~l------------------------ 637 (837)
....+...++++ ++..|.. .|+++.+..-... ..++..++....+
T Consensus 311 ~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf 389 (480)
T 1ho8_A 311 IKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF 389 (480)
T ss_dssp HHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG
T ss_pred HHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHH
Confidence 011222234444 5555543 3666655432221 2222222221111
Q ss_pred HH--cCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHH
Q 003227 638 AA--AGGVEALVVLAQSCS-------NASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAG 707 (837)
Q Consensus 638 ~~--~g~i~~L~~ll~~~~-------~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~ 707 (837)
.+ ...++.|+.+|.+.. +.++.+..-|+.=++.++.. |..+..+.+.|+=+.+++++.+++++|+..|+.
T Consensus 390 ~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~ 469 (480)
T 1ho8_A 390 KKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALK 469 (480)
T ss_dssp SSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 11 135788999997411 24677777888888888874 888888888899889999999999999999999
Q ss_pred HHHHHc
Q 003227 708 ALWNLA 713 (837)
Q Consensus 708 ~L~~l~ 713 (837)
++..+.
T Consensus 470 avQklm 475 (480)
T 1ho8_A 470 ATQAII 475 (480)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 160
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.42 E-value=1.4e-05 Score=74.24 Aligned_cols=221 Identities=18% Similarity=0.061 Sum_probs=155.4
Q ss_pred CCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC
Q 003227 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (837)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (837)
+.+..|..++ ++.++.++.+++.+|..+... +.......-...++.++.++.+.+ +.+...|.++|..+-.+.+-
T Consensus 33 ~~l~~L~~LL---~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 33 RALFLILELA---GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHT---TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCB
T ss_pred hHHHHHHHHH---hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCC
Confidence 3577788888 668999999999999999875 232233333457899999998775 99999999999999876332
Q ss_pred CCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 003227 589 NSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGAL 668 (837)
Q Consensus 589 ~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L 668 (837)
.+ ..+ ......+..+++++++-+++.|+..+..+......+ +.+..+.+++.+ .+..++..|..+|
T Consensus 109 ~~---~~y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~S---kd~~vK~agl~~L 174 (265)
T 3b2a_A 109 GS---KTF--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVS---PDLYTKVAGFCLF 174 (265)
T ss_dssp CH---HHH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTC---SSHHHHHHHHHHH
T ss_pred CH---HHH--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 22 111 245677888889999999999999999984433333 245678888866 9999999999999
Q ss_pred HhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHh-cCCcHHHHHHH
Q 003227 669 WGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCS-SSGSKMARFMA 747 (837)
Q Consensus 669 ~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~-~~~~~~~~~~a 747 (837)
.+++...+... +. .+.+.-+-.+|++.++.+++.|+.+|..+...|-....+-+--++-..+.-+. -...|.++..|
T Consensus 175 ~eia~~S~D~~-i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 175 LNMLNSSADSG-HL-TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp HHHGGGCSSCC-CG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred HHhhcccCCHH-HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 99986432211 11 12455677889999999999999999999886544322222222333343333 23347777776
Q ss_pred HHH
Q 003227 748 ALA 750 (837)
Q Consensus 748 ~~a 750 (837)
-..
T Consensus 253 ~~v 255 (265)
T 3b2a_A 253 KKV 255 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 161
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=4.3e-08 Score=114.89 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=81.2
Q ss_pred hCCCcceeeecCcccchHHHH--HcCCCccEEecCCCCCCCH----HHHHHHH---hcCCCCCeEEeCCCCCCCCCHHHH
Q 003227 101 RCMNLQKLRFRGAESADSIIH--LQARNLRELSGDYCRKITD----ATLSVIV---ARHEALESLQLGPDFCERITSDAV 171 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~----~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~l 171 (837)
.+++|+.|+|++|.....+.. ..+++|++|++++|..++. ..+..+. ..+++|+.|++++ + .++ .+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~--N-~L~--~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY--N-NLE--EF 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS--S-CCC--BC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC--C-cCC--cc
Confidence 568899999998865543322 2688999999998764665 2222222 3456899999962 3 444 23
Q ss_pred HH--HHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhhCCCC-CCEeeccCC
Q 003227 172 KA--IALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLS-VRFLSVAGT 237 (837)
Q Consensus 172 ~~--l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~-L~~L~ls~~ 237 (837)
.. ....+++|+.|+|+++ .++ .+. ....+++|++|++++|. ++. ..+..+++ |++|++++|
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS
T ss_pred CChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC
Confidence 22 3345788999988887 455 233 22345788888888874 332 23555666 777777776
No 162
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.40 E-value=1.8e-08 Score=103.33 Aligned_cols=175 Identities=17% Similarity=0.115 Sum_probs=118.0
Q ss_pred CCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCC
Q 003227 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (837)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L 181 (837)
+++++.++++++.... +.....++++.|+++++. ++... ......+++|++|++++ + .++.... ...+++|
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~~~~---~~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDR--A-ELTKLQV---DGTLPVL 79 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTT--S-CCCEEEC---CSCCTTC
T ss_pred cCCccEEECCCCCCCc-CCCCCCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCC--C-ccCcccC---CCCCCcC
Confidence 4678899998875442 111234789999999976 44321 12235689999999962 3 4443211 1468999
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEE
Q 003227 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (837)
Q Consensus 182 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L 258 (837)
++|+++++ .++. +......+++|++|++++|. ++. ..+..+++|++|++++|. ++... ......+++|+.|
T Consensus 80 ~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEE
T ss_pred CEEECCCC-cCCc--CchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccC-hhhcccccCCCEE
Confidence 99999998 5542 22233467999999999984 443 457889999999999983 33211 1223568899999
Q ss_pred EeccCCCCHHHHHHHHhcCcccccccccccccccc
Q 003227 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (837)
Q Consensus 259 ~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~ 293 (837)
++++|.++.-. ..+...+++|+.|+++++. ++.
T Consensus 154 ~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~ 186 (290)
T 1p9a_G 154 SLANNNLTELP-AGLLNGLENLDTLLLQENS-LYT 186 (290)
T ss_dssp ECTTSCCSCCC-TTTTTTCTTCCEEECCSSC-CCC
T ss_pred ECCCCcCCccC-HHHhcCcCCCCEEECCCCc-CCc
Confidence 99998775211 1122358999999999987 553
No 163
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.39 E-value=1.9e-07 Score=104.89 Aligned_cols=156 Identities=13% Similarity=0.177 Sum_probs=110.3
Q ss_pred HhCCCcceeeecCcccchHHHH--HcCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHh
Q 003227 100 SRCMNLQKLRFRGAESADSIIH--LQARNLRELSGDYCRKITD-ATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (837)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 176 (837)
..+++|++|++++|...+.... ..+++|++|++++|. ++. ..+......+++|++|+++ ++ .++...-.....
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls--~N-~l~~~l~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDIS--QN-SVSYDEKKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECC--SS-CCBCCGGGCSCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECC--CC-cCCcccccchhc
Confidence 4678999999999987763333 268999999999987 543 3455556789999999996 33 443211111234
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~ 254 (837)
.+++|++|+++++ .+++..... ..++|++|++++| .++. ..+..+++|++|++++|. ++.-.. .....+++
T Consensus 397 ~l~~L~~L~Ls~N-~l~~~~~~~---l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~l~~ 469 (520)
T 2z7x_B 397 WTKSLLSLNMSSN-ILTDTIFRC---LPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPD-GIFDRLTS 469 (520)
T ss_dssp CCTTCCEEECCSS-CCCGGGGGS---CCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred cCccCCEEECcCC-CCCcchhhh---hcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCH-HHhccCCc
Confidence 5789999999999 676533221 1269999999999 4553 345689999999999983 432111 13466899
Q ss_pred ccEEEeccCCCC
Q 003227 255 LVGLDVSRTDVG 266 (837)
Q Consensus 255 L~~L~l~~~~i~ 266 (837)
|+.|++++|.+.
T Consensus 470 L~~L~l~~N~~~ 481 (520)
T 2z7x_B 470 LQKIWLHTNPWD 481 (520)
T ss_dssp CCEEECCSSCBC
T ss_pred ccEEECcCCCCc
Confidence 999999998764
No 164
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.39 E-value=8.6e-09 Score=120.17 Aligned_cols=203 Identities=16% Similarity=0.119 Sum_probs=124.7
Q ss_pred ccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHH---HHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeE
Q 003227 80 WSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSI---IHLQARNLRELSGDYCRKITDATLSVIVARHEALESL 156 (837)
Q Consensus 80 ~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L 156 (837)
.+.++++...++.-. ......+++|+.|+++++.....+ .-..+++|++|++++|. ++... ......+++|+.|
T Consensus 383 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~~~~L~~L 459 (680)
T 1ziw_A 383 LHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLT-RNSFALVPSLQRL 459 (680)
T ss_dssp CCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECC-TTTTTTCTTCCEE
T ss_pred CceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeC-hhhhhcCcccccc
Confidence 355666654433210 111235689999999998765322 12268899999999986 22110 1112358899999
Q ss_pred EeCCCCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChH-----------Hhh
Q 003227 157 QLGPDFCERITS-DAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV-----------ALG 224 (837)
Q Consensus 157 ~l~~~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-----------~l~ 224 (837)
++++ + .+.. ..+......+++|+.|+++++ .++... ......+++|++|++++|. ++.. .+.
T Consensus 460 ~l~~--n-~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~ 533 (680)
T 1ziw_A 460 MLRR--V-ALKNVDSSPSPFQPLRNLTILDLSNN-NIANIN-DDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLK 533 (680)
T ss_dssp ECTT--S-CCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTT
T ss_pred hhcc--c-cccccccCCcccccCCCCCEEECCCC-CCCcCC-hhhhccccccCEEeCCCCC-ccccchhhccCCcchhhc
Confidence 9963 3 2211 111112346889999999987 454311 1122457899999999984 4431 257
Q ss_pred CCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 225 NVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 225 ~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
.+++|++|++++|. ++.-. .....++++|+.|++++|.++.-. ......+++|+.|++++|. ++...
T Consensus 534 ~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~ 600 (680)
T 1ziw_A 534 GLSHLHILNLESNG-FDEIP-VEVFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNL-ITSVE 600 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSC-CCBCC
T ss_pred CCCCCCEEECCCCC-CCCCC-HHHcccccCcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCc-CCccC
Confidence 78999999999873 33111 122467889999999998765211 1122357899999999986 66554
No 165
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.39 E-value=2.6e-09 Score=111.08 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=15.7
Q ss_pred CCCccEEEecCCCCCC---hHHhhCCC-CCCEeeccCC
Q 003227 204 CPNLTDIGFLDCLNVD---EVALGNVL-SVRFLSVAGT 237 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~---~~~l~~l~-~L~~L~ls~~ 237 (837)
+++|++|++++|. ++ ...+..++ +|++|++++|
T Consensus 148 l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 148 LPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSS
T ss_pred CCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCC
Confidence 4555555555552 22 12344444 5555555554
No 166
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.37 E-value=1.5e-08 Score=101.62 Aligned_cols=107 Identities=10% Similarity=0.123 Sum_probs=52.3
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~ 253 (837)
.+++|++|+++++ .++.... .....+++|++|++++| .++. ..+..+++|++|++++| .++... ......++
T Consensus 81 ~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~ 155 (251)
T 3m19_A 81 DLTELGTLGLANN-QLASLPL-GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIP-AGAFDKLT 155 (251)
T ss_dssp TCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred cCCcCCEEECCCC-cccccCh-hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccC-HHHcCcCc
Confidence 3556666666655 3332110 11223466666666665 2332 22455666666666665 232111 01123456
Q ss_pred CccEEEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 254 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
+|+.|++++|.++.-.- .....+++|+.|++++++
T Consensus 156 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCc
Confidence 67777776665432111 112245667777777666
No 167
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.35 E-value=2.4e-08 Score=101.84 Aligned_cols=180 Identities=17% Similarity=0.105 Sum_probs=113.9
Q ss_pred CCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
++|++|+++++....... -..+++|++|++++|. ++... ......+++|++|++++ + .++...... ...+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~~~~~~-~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTG--N-PIQSLALGA-FSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEEC-TTTTTTCTTCCEEECTT--C-CCCEECTTT-TTTCTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccC-HHHccCCcCCCEEECCC--C-ccCccChhh-hcCCcc
Confidence 469999999986653221 2267899999999985 44211 11235688999999962 3 443322112 245899
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC---hHHhhCCCCCCEeeccCCCCCCH---HHHHHHHhcCCC
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKW---GVVSQVWHKLPK 254 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~---~~~l~~l~~L~~L~ls~~~~i~~---~~l~~~~~~~~~ 254 (837)
|++|+++++ .++...-.. ...+++|++|++++|...+ ...+..+++|++|++++|. ++. ..+..+ ..++.
T Consensus 102 L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~ 177 (276)
T 2z62_A 102 LQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL-HQMPL 177 (276)
T ss_dssp CCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH-HTCTT
T ss_pred ccEEECCCC-CccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhh-hhccc
Confidence 999999987 443311111 2357999999999984332 2567889999999999873 332 222222 23444
Q ss_pred cc-EEEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 255 LV-GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 255 L~-~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
|. .|++++|.++.-.... ....+|+.|++++|. ++...
T Consensus 178 l~l~L~ls~n~l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~ 216 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGA--FKEIRLKELALDTNQ-LKSVP 216 (276)
T ss_dssp CCEEEECCSSCCCEECTTS--SCSCCEEEEECCSSC-CSCCC
T ss_pred cceeeecCCCcccccCccc--cCCCcccEEECCCCc-eeecC
Confidence 44 8999998765321111 124589999999987 66443
No 168
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.34 E-value=2.3e-05 Score=82.26 Aligned_cols=234 Identities=11% Similarity=0.067 Sum_probs=160.8
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHhccChHHHHHHHHcCC--HHHHHHHHhcC-----------------CHHHHHHHHHH
Q 003227 433 LLDLAKS-WREGLQSEAAKAIANLSVNAKVAKAVAEEGG--INILAVLARSM-----------------NRLVAEEAAGG 492 (837)
Q Consensus 433 Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~--i~~L~~lL~~~-----------------~~~~~~~a~~~ 492 (837)
++..|.+ ++...+..++.+|..+...++.|..+.+.++ ++.++.+++.. ..+++..++-+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 4555665 3456688999999999999999999987665 67776554421 35678999999
Q ss_pred HHhhccCccchHHHHhhCCH--HHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-Cch----HH-HHhcCcHHHHHHHHh
Q 003227 493 LWNLSVGEEHKGAIADAGGV--KALVDLIFKWSSGGDGVLERAAGALANLAADD-KCS----ME-VALAGGVHALVMLAR 564 (837)
Q Consensus 493 L~~l~~~~~~~~~l~~~g~i--~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~-~~~----~~-l~~~g~i~~L~~ll~ 564 (837)
+|-++.+++..+.+...+.. +.|+++++ .+..+.+.+-++.+|.|+.... ... .. ++..++ ..++..|.
T Consensus 252 iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k--~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQKYLSDFLDLLKLVK--ITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHTTSHHHHHHHHTTSHHHHHHHHHHHH--HCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHcCHHHHHHHHhcchHHHHHHHHHHH--hhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 99999998888888777643 56777787 4567889999999999999854 122 22 222344 44666665
Q ss_pred cC--CCHHHHHHHHHHH-------HH---------------HhcCCCC-C----Ccccchhh--ccchHHHHHHHcCC--
Q 003227 565 SC--KFEGVQEQAARAL-------AN---------------LAAHGDS-N----SNNSAVGQ--EAGALEALVQLTRS-- 611 (837)
Q Consensus 565 ~~--~~~~~~~~a~~~L-------~~---------------l~~~~~~-~----~~~~~~~~--~~~~i~~L~~lL~~-- 611 (837)
.. .|+++....-... .. |.+.+.. . .+|...+. +...+..|+++|.+
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 42 3455443211111 11 1111000 0 01222222 33578889999973
Q ss_pred --------CCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 612 --------PHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 612 --------~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
.++.+..-||.-++.++.+ +..+..+.+.|+=+.+++++.+ ++++|+.+|+.++..+.
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h---~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH---SDSRVKYEALKATQAII 475 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC---SSHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 3677777888899998887 7778888888999999999987 99999999999987753
No 169
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.33 E-value=6.4e-08 Score=96.98 Aligned_cols=185 Identities=15% Similarity=0.151 Sum_probs=115.9
Q ss_pred hcHHHHHHhcCCCcccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHH
Q 003227 66 TCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATL 143 (837)
Q Consensus 66 v~~~w~~~~~~~~~~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l 143 (837)
.|..|..... ..-|+.++++...++.- . ....++++.|+++++....... -..+++|++|+++++. ++...
T Consensus 3 ~Cp~~~gC~C-~~~~~~l~~~~~~l~~~--p--~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~- 75 (251)
T 3m19_A 3 TCETVTGCTC-NEGKKEVDCQGKSLDSV--P--SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLS- 75 (251)
T ss_dssp -CHHHHSSEE-EGGGTEEECTTCCCSSC--C--SCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCC-
T ss_pred cCCCCCceEc-CCCCeEEecCCCCcccc--C--CCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccC-
Confidence 4667753311 12345666655332210 0 0012579999999987654322 1267999999999976 44311
Q ss_pred HHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---
Q 003227 144 SVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--- 220 (837)
Q Consensus 144 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--- 220 (837)
......+++|++|++++ +.++.... .....+++|++|+|+++ .++.-. ......+++|++|++++| .++.
T Consensus 76 ~~~~~~l~~L~~L~L~~---n~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~ 148 (251)
T 3m19_A 76 AGVFDDLTELGTLGLAN---NQLASLPL-GVFDHLTQLDKLYLGGN-QLKSLP-SGVFDRLTKLKELRLNTN-QLQSIPA 148 (251)
T ss_dssp TTTTTTCTTCCEEECTT---SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred HhHhccCCcCCEEECCC---CcccccCh-hHhcccCCCCEEEcCCC-cCCCcC-hhHhccCCcccEEECcCC-cCCccCH
Confidence 12235689999999962 34442111 12346899999999998 555211 112245799999999998 4443
Q ss_pred HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCC
Q 003227 221 VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG 266 (837)
Q Consensus 221 ~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~ 266 (837)
..+..+++|++|++++|. ++... ......+++|+.|++++|.+.
T Consensus 149 ~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQ-LQSVP-HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred HHcCcCcCCCEEECCCCc-CCccC-HHHHhCCCCCCEEEeeCCcee
Confidence 357889999999999983 33211 123356899999999998764
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.33 E-value=2.8e-06 Score=79.35 Aligned_cols=72 Identities=13% Similarity=0.303 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC---CCCCEEEecCCCCCCHHHHHHHHhh---CCCccEEEecC
Q 003227 141 ATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC---PKLKKLRLSGIRDICGDAINALAKL---CPNLTDIGFLD 214 (837)
Q Consensus 141 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~---~~L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l~~ 214 (837)
+.+..+...-+.|++|+|+ .+..+++.+...++..+ ..|++|+|++| .++|.+...+++. -+.|++|+|++
T Consensus 31 ~~l~~ll~~n~~L~~L~L~--~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNIN--NMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHTTCSSCCEEECT--TCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHhcCCCccEEECC--CCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence 3444444555556666653 22355555555444322 35555555555 4555554444321 13444444444
Q ss_pred C
Q 003227 215 C 215 (837)
Q Consensus 215 ~ 215 (837)
|
T Consensus 108 N 108 (197)
T 1pgv_A 108 N 108 (197)
T ss_dssp S
T ss_pred C
Confidence 4
No 171
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.33 E-value=7.9e-08 Score=85.16 Aligned_cols=121 Identities=21% Similarity=0.154 Sum_probs=92.4
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccch
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANC 678 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~ 678 (837)
...++.+..+|+++++.+|..|+.+|..+... .++.|+.++.+ +++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d---~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSN---EDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGC---SCHHHHHHHHHHHGGGCS-----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcC---CCHHHHHHHHHHHHhcCC-----
Confidence 46678899999999999999998888876432 36888899987 899999999999999653
Q ss_pred hhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 003227 679 IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYM 754 (837)
Q Consensus 679 ~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l 754 (837)
...++.|+.+++++++.|+..|+++|.++.. ..+++.|+.++.+++ +.+|..|+.+|+.+
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~-~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT-GFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC-THHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHhC
Confidence 2358899999999999999999999999872 346789999998654 78999999988753
No 172
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.30 E-value=2e-08 Score=105.49 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=52.8
Q ss_pred CCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccc
Q 003227 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 281 (837)
++|++|++++|. ++. ..+..+++|++|++++|. ++.... .....+++|+.|++++|.++. +..-...+++|+
T Consensus 193 ~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQ-IRMIEN-GSLSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSC-CCCCCT-TGGGGCTTCCEEECCSSCCCB--CCTTGGGCTTCC
T ss_pred CCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCcCCh-hHhhCCCCCCEEECCCCcCee--cChhhhcCccCC
Confidence 567777777763 332 346677888888888763 322111 123467888888888876651 111123578888
Q ss_pred cccccccccccchh
Q 003227 282 VLCALNCPVLEEEN 295 (837)
Q Consensus 282 ~l~l~~c~~i~~~~ 295 (837)
.|++++|. +++.+
T Consensus 268 ~L~l~~N~-l~~~~ 280 (332)
T 2ft3_A 268 VVYLHTNN-ITKVG 280 (332)
T ss_dssp EEECCSSC-CCBCC
T ss_pred EEECCCCC-CCccC
Confidence 88888876 66554
No 173
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.30 E-value=3e-07 Score=103.99 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=36.7
Q ss_pred CCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccccc
Q 003227 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~ 284 (837)
++|++|++++| .++.-. ..+++|++|++++| .++. +...+++|+.|++++|.++ .+...+..+++|+.|+
T Consensus 221 ~~L~~L~Ls~N-~L~~lp-~~l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP-VLPSELKELMVSGN-RLTS-----LPMLPSGLLSLSVYRNQLT--RLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSS-CCSCCC-CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCC-ccCcCC-CCCCcCcEEECCCC-CCCc-----CCcccccCcEEeCCCCCCC--cCCHHHhhccccCEEE
Confidence 45555555555 232211 33455666666555 2221 1114555666666665544 1111122456666666
Q ss_pred ccccccccc
Q 003227 285 ALNCPVLEE 293 (837)
Q Consensus 285 l~~c~~i~~ 293 (837)
+++|+ ++.
T Consensus 291 L~~N~-l~~ 298 (622)
T 3g06_A 291 LEGNP-LSE 298 (622)
T ss_dssp CCSCC-CCH
T ss_pred ecCCC-CCC
Confidence 66665 443
No 174
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.30 E-value=5.7e-05 Score=70.19 Aligned_cols=185 Identities=16% Similarity=0.047 Sum_probs=142.6
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhccC--hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchH
Q 003227 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKG 504 (837)
Q Consensus 428 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~ 504 (837)
+.+..|..+|.+.|+.++..|+.+|..+... ...+..+.+. .++.+++++++.+..+.-.|+.+|..|..+ |-...
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3566889999999999999999999998873 5555555544 799999999999999999999999999865 33334
Q ss_pred HHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 003227 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (837)
.+.. .+.+|.+++. ++++-+...++..++.+.-....+ +.+..+..++.+ .+..++..+..++.+++.
T Consensus 112 ~y~K--l~~aL~dlik---~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~S-kd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLE---SPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVS-PDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHHH--HHHHHHHHTT---SCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTC-SSHHHHHHHHHHHHHHGG
T ss_pred HHHH--HHHHHHHHhc---CCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhC-CChhHHHHHHHHHHHhhc
Confidence 3333 3566778884 588999999999999993333232 246677888854 469999999999999998
Q ss_pred CCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh
Q 003227 585 HGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD 631 (837)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~ 631 (837)
..++.. . -.+++..+-.+|+++|+.+++.|+.++-.+...+
T Consensus 180 ~S~D~~----i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 180 SSADSG----H--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp GCSSCC----C--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccCCHH----H--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 543222 1 1356677888899999999999999999887653
No 175
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.29 E-value=2.2e-08 Score=114.98 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=77.3
Q ss_pred hCCCcceeeecCcccchHHHHH--cCCCccEEecCCCCCCCHHHHHHHHh------cCCCCCeEEeCCCCCCCCCHHHHH
Q 003227 101 RCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATLSVIVA------RHEALESLQLGPDFCERITSDAVK 172 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~l~~~~~------~~~~L~~L~l~~~~~~~~~~~~l~ 172 (837)
.+++|+.|++++|.....+... .+++|++|++++|..++...+..-.. .+++|++|++++ + .++ .+.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~--n-~l~--~ip 321 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY--N-NLK--TFP 321 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS--S-CCS--SCC
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC--C-cCC--ccC
Confidence 5788999999998765433322 67899999999986566522333222 348999999962 3 444 232
Q ss_pred H--HHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhhCCCC-CCEeeccCC
Q 003227 173 A--IALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLS-VRFLSVAGT 237 (837)
Q Consensus 173 ~--l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~-L~~L~ls~~ 237 (837)
. ....+++|+.|+++++ .+++. +..+ ..+++|++|++++|. ++. ..+..+++ |++|++++|
T Consensus 322 ~~~~l~~l~~L~~L~L~~N-~l~g~-ip~~-~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYN-QLEGK-LPAF-GSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CHHHHTTCTTCCEEECCSC-CCEEE-CCCC-EEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSS
T ss_pred chhhhccCCCCCEEeCcCC-cCccc-hhhh-CCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCC
Confidence 2 3345888999999887 44411 1112 234566666666652 221 22444555 666666555
No 176
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.28 E-value=8.9e-06 Score=75.92 Aligned_cols=119 Identities=10% Similarity=0.190 Sum_probs=91.1
Q ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhC---CCccEEEecCCCCCChHHh-------hCCCCCCEeeccCCC
Q 003227 169 DAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC---PNLTDIGFLDCLNVDEVAL-------GNVLSVRFLSVAGTS 238 (837)
Q Consensus 169 ~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~---~~L~~L~l~~~~~~~~~~l-------~~l~~L~~L~ls~~~ 238 (837)
..+..+...-+.|++|+|+++..+++++...+++.+ +.|++|+|++| .++|.+. ..-+.|++|+|++|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N- 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN- 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-
Confidence 456666677789999999986589999988776433 68999999999 7888653 34478999999986
Q ss_pred CCCHHHHHHHHh---cCCCccEEEeccC---CCCHHHHHHH---HhcCcccccccccccc
Q 003227 239 NMKWGVVSQVWH---KLPKLVGLDVSRT---DVGPITISRL---LTSSKSLKVLCALNCP 289 (837)
Q Consensus 239 ~i~~~~l~~~~~---~~~~L~~L~l~~~---~i~~~~l~~l---~~~~~~L~~l~l~~c~ 289 (837)
.|++.+...+.. ..+.|++|+|+++ .+++.+-..+ +..-+.|+.|++..+.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 799999988874 3456999999863 6788765444 3455789999987543
No 177
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.27 E-value=5.6e-09 Score=104.00 Aligned_cols=177 Identities=9% Similarity=-0.020 Sum_probs=93.3
Q ss_pred CCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
++|+.|+++++....... -..+++|++|+++++..++.-. ......+++|++|+++ +|+.++.... .....+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~--~~n~l~~i~~-~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIR--NTRNLTYIDP-DALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEE--EETTCCEECT-TSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECC--CCCCeeEcCH-HHhCCCCC
Confidence 367777777765442211 1246777777777764222110 0112456777777774 2344442111 11234677
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCcc---EEEecCCCCCCh---HHhhCCCCCC-EeeccCCCCCCHHHHHHHHhcCC
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLT---DIGFLDCLNVDE---VALGNVLSVR-FLSVAGTSNMKWGVVSQVWHKLP 253 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~---~L~l~~~~~~~~---~~l~~l~~L~-~L~ls~~~~i~~~~l~~~~~~~~ 253 (837)
|++|+++++ .++. +.. ...+++|+ +|++++|..++. ..+..+++|+ +|++++|. ++.-.. ..... +
T Consensus 107 L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~-~~~~~-~ 179 (239)
T 2xwt_C 107 LKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQG-YAFNG-T 179 (239)
T ss_dssp CCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECT-TTTTT-C
T ss_pred CCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCH-hhcCC-C
Confidence 777777776 3332 222 23456666 777777633433 3466777777 77777652 321111 11122 5
Q ss_pred CccEEEeccC-CCCHHHHHHHHhcC-ccccccccccccccc
Q 003227 254 KLVGLDVSRT-DVGPITISRLLTSS-KSLKVLCALNCPVLE 292 (837)
Q Consensus 254 ~L~~L~l~~~-~i~~~~l~~l~~~~-~~L~~l~l~~c~~i~ 292 (837)
+|+.|++++| .++.-.- .....+ ++|+.|+++++. ++
T Consensus 180 ~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~-l~ 218 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTS-VT 218 (239)
T ss_dssp EEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCC-CC
T ss_pred CCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCc-cc
Confidence 6777777777 3542111 112235 677777777765 44
No 178
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.26 E-value=4.5e-08 Score=112.44 Aligned_cols=178 Identities=9% Similarity=0.128 Sum_probs=115.0
Q ss_pred HHhCCCcceeeecCcccchH-----------------HHHH----cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEE
Q 003227 99 ASRCMNLQKLRFRGAESADS-----------------IIHL----QARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (837)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~----~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~ 157 (837)
...+++|+.|+|+++.+... +... .+++|++|++++|.... .+......+++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEE
Confidence 45678999999999976652 2221 57899999999986222 1222345689999999
Q ss_pred eCCCCCCCCCH-HHHHHHH-----hcCCCCCEEEecCCCCCCHHHHHH--HHhhCCCccEEEecCCCCCC-h-HHhhCCC
Q 003227 158 LGPDFCERITS-DAVKAIA-----LCCPKLKKLRLSGIRDICGDAINA--LAKLCPNLTDIGFLDCLNVD-E-VALGNVL 227 (837)
Q Consensus 158 l~~~~~~~~~~-~~l~~l~-----~~~~~L~~L~l~~~~~i~~~~~~~--l~~~~~~L~~L~l~~~~~~~-~-~~l~~l~ 227 (837)
++ ++..++. .-...+. ..+++|+.|+++++ .++ .+.. ....+++|++|++++|. ++ . ..+..++
T Consensus 280 Ls--~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~ 353 (636)
T 4eco_A 280 VA--CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEI 353 (636)
T ss_dssp CT--TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEE
T ss_pred Cc--CCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCC
Confidence 96 3533665 2222232 23589999999998 566 3332 33467999999999984 43 2 3567789
Q ss_pred CCCEeeccCCCCCCHHHHHHHHhcCCC-ccEEEeccCCCCHHHHHHHHhc--Ccccccccccccc
Q 003227 228 SVRFLSVAGTSNMKWGVVSQVWHKLPK-LVGLDVSRTDVGPITISRLLTS--SKSLKVLCALNCP 289 (837)
Q Consensus 228 ~L~~L~ls~~~~i~~~~l~~~~~~~~~-L~~L~l~~~~i~~~~l~~l~~~--~~~L~~l~l~~c~ 289 (837)
+|++|++++|. ++ .+......+++ |++|++++|.++ .+...... +++|+.|++++|.
T Consensus 354 ~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 354 KLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp EESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCc
Confidence 99999999873 32 11122345667 888888887665 11111111 2356666666665
No 179
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.26 E-value=1.9e-07 Score=87.66 Aligned_cols=39 Identities=18% Similarity=0.065 Sum_probs=17.6
Q ss_pred cCCCccEEEeccCCCCH--HHHHHHHhcCcccccccccccc
Q 003227 251 KLPKLVGLDVSRTDVGP--ITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 251 ~~~~L~~L~l~~~~i~~--~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
.+++|+.|++++|.++. .....+...+++|+.|+++++.
T Consensus 111 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 45555555555544321 1111123345566666665554
No 180
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.25 E-value=1.1e-07 Score=96.42 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=103.8
Q ss_pred hCCCcceeeecCcccchHHHH--HcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC
Q 003227 101 RCMNLQKLRFRGAESADSIIH--LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~ 178 (837)
.+++|++|+++++........ ..+++|++|+++++. ++... ......+++|++|++++ + .++..... ....+
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~~~-~~~~l 132 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALP-IGVFDQLVNLAELRLDR--N-QLKSLPPR-VFDSL 132 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCEEECCS--S-CCCCCCTT-TTTTC
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCC-HhHcccccCCCEEECCC--C-ccCeeCHH-HhCcC
Confidence 468899999999866532111 257899999999976 43211 12235689999999963 3 34322111 12468
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCc
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L 255 (837)
++|++|+++++ .++..... ....+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++|
T Consensus 133 ~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 207 (270)
T 2o6q_A 133 TKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVP-EGAFDSLEKL 207 (270)
T ss_dssp TTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTC
T ss_pred cCCCEEECCCC-cCCccCHh-HccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCC-HHHhccccCC
Confidence 99999999998 45432111 22457999999999984 433 45788999999999998 343221 1223568999
Q ss_pred cEEEeccCCC
Q 003227 256 VGLDVSRTDV 265 (837)
Q Consensus 256 ~~L~l~~~~i 265 (837)
+.|++++|.+
T Consensus 208 ~~L~l~~N~~ 217 (270)
T 2o6q_A 208 KMLQLQENPW 217 (270)
T ss_dssp CEEECCSSCB
T ss_pred CEEEecCCCe
Confidence 9999999754
No 181
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.25 E-value=4.2e-08 Score=94.26 Aligned_cols=103 Identities=16% Similarity=0.060 Sum_probs=55.3
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccE
Q 003227 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~ 257 (837)
+++|++|+++++ .++. +......+|+|++|++++|...+-..+..+++|++|++++|. +++.........+++|++
T Consensus 69 l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 69 MENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSE
T ss_pred CCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCE
Confidence 556666666655 3331 122223346677777776633333455666677777776653 333221123345677777
Q ss_pred EEeccCCCCHH---------HHHHHHhcCccccccc
Q 003227 258 LDVSRTDVGPI---------TISRLLTSSKSLKVLC 284 (837)
Q Consensus 258 L~l~~~~i~~~---------~l~~l~~~~~~L~~l~ 284 (837)
|++++|.++.. ....+...+++|+.|+
T Consensus 145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 77777655322 1223344577888776
No 182
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.22 E-value=1.9e-08 Score=105.76 Aligned_cols=102 Identities=12% Similarity=0.017 Sum_probs=55.2
Q ss_pred CCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
++|+.|+++++....... -..+++|++|++++|. ++... ......+++|++|++++ + .++... ....++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~l~----~~~~~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIH-EKAFSPLRKLQKLYISK--N-HLVEIP----PNLPSS 124 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-GGGSTTCTTCCEEECCS--S-CCCSCC----SSCCTT
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccC-HhHhhCcCCCCEEECCC--C-cCCccC----cccccc
Confidence 567788887775543211 1256778888887765 43211 11234567788888752 2 333100 011267
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCC
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC 215 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 215 (837)
|++|+++++ .++.... .....+++|++|++++|
T Consensus 125 L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 125 LVELRIHDN-RIRKVPK-GVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CCEEECCSS-CCCCCCS-GGGSSCSSCCEEECCSC
T ss_pred CCEEECCCC-ccCccCH-hHhCCCccCCEEECCCC
Confidence 777777776 3432111 11234677777777776
No 183
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.21 E-value=2.9e-08 Score=98.79 Aligned_cols=175 Identities=12% Similarity=0.015 Sum_probs=113.4
Q ss_pred hCCCcceeeecCcc-cchHH--HHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhc
Q 003227 101 RCMNLQKLRFRGAE-SADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (837)
Q Consensus 101 ~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~ 177 (837)
.+++|+.|+++++. ...-. .-..+++|++|++++|..++.-. ......+++|++|++++ + .++. +.. ...
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~--n-~l~~--lp~-~~~ 125 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFN--T-GLKM--FPD-LTK 125 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEE--E-CCCS--CCC-CTT
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCC--C-CCcc--ccc-ccc
Confidence 46899999999996 43211 11368999999999855455311 11234689999999963 3 3332 112 345
Q ss_pred CCCCC---EEEecCCCCCCHHHHHHHHhhCCCcc-EEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHh
Q 003227 178 CPKLK---KLRLSGIRDICGDAINALAKLCPNLT-DIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWH 250 (837)
Q Consensus 178 ~~~L~---~L~l~~~~~i~~~~~~~l~~~~~~L~-~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~ 250 (837)
+++|+ +|++++++.++.-.-. ....+++|+ +|++++| .++. ..+.. ++|++|++++|..++... .....
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~-~~~~~ 201 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYLNKNKYLTVID-KDAFG 201 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEECTTCTTCCEEC-TTTTT
T ss_pred ccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEcCCCCCcccCC-HHHhh
Confidence 77787 9999988444331111 123579999 9999998 4443 23344 799999999985454322 12235
Q ss_pred cC-CCccEEEeccCCCCHHHHHHHHhcCccccccccccccc
Q 003227 251 KL-PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (837)
Q Consensus 251 ~~-~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~ 290 (837)
.+ ++|+.|++++|.++.-... .+++|+.|.+.++..
T Consensus 202 ~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp TCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC--
T ss_pred ccccCCcEEECCCCccccCChh----HhccCceeeccCccC
Confidence 57 8999999999876521111 478899999988753
No 184
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.21 E-value=1.7e-07 Score=109.07 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=21.1
Q ss_pred cCCCccEEEeccCCCCHHHHHHHHh--cCcccccccccccc
Q 003227 251 KLPKLVGLDVSRTDVGPITISRLLT--SSKSLKVLCALNCP 289 (837)
Q Consensus 251 ~~~~L~~L~l~~~~i~~~~l~~l~~--~~~~L~~l~l~~c~ 289 (837)
.+++|+.|++.++.+++.....+.. ..++|+.|++++|.
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 3455555555555554444443332 23667777777765
No 185
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.20 E-value=5.2e-05 Score=78.04 Aligned_cols=278 Identities=15% Similarity=0.078 Sum_probs=157.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (837)
+.+++++.+.|.+.+.-.-.++..++...++- + =++..+.+=++++|+-++-.|+++|.++...+=.
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~----------i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~ 137 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV----------I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML 137 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG----------G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH----------H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH
Confidence 56788999999999999988888877653322 1 2355778888899999999999999999875411
Q ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 003227 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (837)
Q Consensus 462 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~ 541 (837)
. . ..+.+.+.+.+.++.|+..|+.+..++.... .+ +++ +.++.+-+++ .+.++.++.+|+.+|..+.
T Consensus 138 ~-~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe-~v~-~~~~~l~~ll---~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 138 Q-A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FD-VVK-RWVNEAQEAA---SSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp H-H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HH-HHH-TTHHHHHHHT---TCSSHHHHHHHHHHHHHHH
T ss_pred H-H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HH-HHH-HHHHHHHHHh---cCCCccHHHHHHHHHHHHH
Confidence 1 1 2455667788899999999999999988532 22 222 5788888888 4588999999999999998
Q ss_pred cCCCchHHHHhcCcHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHH
Q 003227 542 ADDKCSMEVALAGGVHALVMLARSCK--FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQE 619 (837)
Q Consensus 542 ~~~~~~~~l~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~ 619 (837)
..+.. .+..++..+..+. ++-.+...++.+..+...++ ++ .....++.+...|++.++.|...
T Consensus 205 ~~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~--~~-----~~~~~~~~l~~~L~~~~~aVvyE 269 (355)
T 3tjz_B 205 KNDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED--GS-----RDSPLFDFIESCLRNKHEMVVYE 269 (355)
T ss_dssp TTCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------CCCCCSSHHHHHH
T ss_pred hhchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--hh-----hHHHHHHHHHHHHcCCChHHHHH
Confidence 65411 4555666665532 24444444444333332210 11 12456778888899999999999
Q ss_pred HHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCH
Q 003227 620 AAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAE 699 (837)
Q Consensus 620 a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~ 699 (837)
|+.++..+...+.. +. ..++..|..++.+ .++.+|..|+..|..+....+. ++. ..-..+.+++.+++-
T Consensus 270 a~k~I~~l~~~~~~---~~-~~a~~~L~~fLss---~d~niryvaLr~L~~l~~~~P~---~v~-~~n~~ie~li~d~n~ 338 (355)
T 3tjz_B 270 AASAIVNLPGCSAK---EL-APAVSVLQLFCSS---PKAALRYAAVRTLNKVAMKHPS---AVT-ACNLDLENLVTDANR 338 (355)
T ss_dssp HHHHHTC---------------CCCTHHHHHHS---SSSSSHHHHHHCC-------------------------------
T ss_pred HHHHHHhccCCCHH---HH-HHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHCcH---HHH-HHHHHHHHHccCCcH
Confidence 99999998663221 11 2356777778876 8889999999988888754221 111 133456678888887
Q ss_pred HHHHHHHHHHHH
Q 003227 700 DVHETAAGALWN 711 (837)
Q Consensus 700 ~v~~~a~~~L~~ 711 (837)
.+...|...|..
T Consensus 339 sI~t~Aittllk 350 (355)
T 3tjz_B 339 SIATLAITTLLK 350 (355)
T ss_dssp ------------
T ss_pred hHHHHHHHHhhh
Confidence 777777666643
No 186
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.18 E-value=2.3e-07 Score=82.14 Aligned_cols=119 Identities=19% Similarity=0.081 Sum_probs=91.6
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 458 (837)
..++.++.+|+++++.++..|+.+|+.+.. ..++.|+.+|+++++.+|..|+++|+++...
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-------------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD-------------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS-------------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-------------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH
Confidence 346889999999999999999999986431 1257899999999999999999999998742
Q ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003227 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (837)
Q Consensus 459 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (837)
. .++.|+.+++++++.++..|+++|.++.. ..+++.|..+++ +.++.++..|+.+|.
T Consensus 73 ~----------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~---d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 R----------AVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAE---TGTGFARKVAVNYLE 129 (131)
T ss_dssp H----------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTT---SCCTHHHHHHHHHGG
T ss_pred H----------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 2 48899999999999999999999999873 236788888884 478889999988876
Q ss_pred H
Q 003227 539 N 539 (837)
Q Consensus 539 ~ 539 (837)
.
T Consensus 130 ~ 130 (131)
T 1te4_A 130 T 130 (131)
T ss_dssp G
T ss_pred h
Confidence 4
No 187
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.17 E-value=3.8e-07 Score=85.64 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=83.8
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh
Q 003227 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 202 (837)
.+++|++|++++|. ++. +..+...+++|+.|++++ + .++.. . ....+++|++|+++++ .++.-. ..+..
T Consensus 17 ~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~--N-~l~~~--~-~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSD--N-EIRKL--D-GFPLLRRLKTLLVNNN-RICRIG-EGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCS--S-CCCEE--C-CCCCCSSCCEEECCSS-CCCEEC-SCHHH
T ss_pred CcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCC--C-CCCcc--c-ccccCCCCCEEECCCC-cccccC-cchhh
Confidence 45677777777765 432 223344455888888852 3 44431 1 2235788888888887 554311 11234
Q ss_pred hCCCccEEEecCCCCCCh-H---HhhCCCCCCEeeccCCCCCCHHH-HHHHHhcCCCccEEEeccCCCCHH
Q 003227 203 LCPNLTDIGFLDCLNVDE-V---ALGNVLSVRFLSVAGTSNMKWGV-VSQVWHKLPKLVGLDVSRTDVGPI 268 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~-~---~l~~l~~L~~L~ls~~~~i~~~~-l~~~~~~~~~L~~L~l~~~~i~~~ 268 (837)
.+|+|++|++++|. +++ . .+..+++|++|++++|....... -..+...+++|+.||++++...+.
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 57899999999884 443 2 46788999999999874321111 122456789999999998866543
No 188
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.17 E-value=5.5e-07 Score=100.50 Aligned_cols=162 Identities=13% Similarity=0.065 Sum_probs=73.9
Q ss_pred CCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCC
Q 003227 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~ 182 (837)
++|+.|++++|.+.. +. ..+++|++|++++|. ++. +.. ...+|++|++++ + .++. +. ..+++|+
T Consensus 80 ~~L~~L~Ls~N~l~~-ip-~~l~~L~~L~Ls~N~-l~~--ip~---l~~~L~~L~Ls~--N-~l~~--lp---~~l~~L~ 143 (571)
T 3cvr_A 80 PQITVLEITQNALIS-LP-ELPASLEYLDACDNR-LST--LPE---LPASLKHLDVDN--N-QLTM--LP---ELPALLE 143 (571)
T ss_dssp TTCSEEECCSSCCSC-CC-CCCTTCCEEECCSSC-CSC--CCC---CCTTCCEEECCS--S-CCSC--CC---CCCTTCC
T ss_pred CCCCEEECcCCCCcc-cc-cccCCCCEEEccCCC-CCC--cch---hhcCCCEEECCC--C-cCCC--CC---CcCcccc
Confidence 456666666554431 11 334566666666653 322 111 112666666641 2 2322 11 1456666
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh-HHhhCCCCCCEeeccCCCCCCHHH-H-HHHHhcCCCccEEE
Q 003227 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGV-V-SQVWHKLPKLVGLD 259 (837)
Q Consensus 183 ~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~L~~L~ls~~~~i~~~~-l-~~~~~~~~~L~~L~ 259 (837)
.|+++++ .++. +. ..+++|++|++++|. ++. ..+. ++|++|++++| .++.-. + ..+....+.|+.|+
T Consensus 144 ~L~Ls~N-~l~~--lp---~~l~~L~~L~Ls~N~-L~~lp~l~--~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 144 YINADNN-QLTM--LP---ELPTSLEVLSVRNNQ-LTFLPELP--ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFR 213 (571)
T ss_dssp EEECCSS-CCSC--CC---CCCTTCCEEECCSSC-CSCCCCCC--TTCCEEECCSS-CCSSCCCCC--------CCEEEE
T ss_pred EEeCCCC-ccCc--CC---CcCCCcCEEECCCCC-CCCcchhh--CCCCEEECcCC-CCCchhhHHHhhhcccccceEEe
Confidence 6666665 3432 11 134566666666663 322 1122 56677777665 232100 0 01111122236777
Q ss_pred eccCCCCHHHHHHHHhcCcccccccccccccccc
Q 003227 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (837)
Q Consensus 260 l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~ 293 (837)
+++|.++. +..-+..+++|+.|++++|+ ++.
T Consensus 214 Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~-l~~ 244 (571)
T 3cvr_A 214 CRENRITH--IPENILSLDPTCTIILEDNP-LSS 244 (571)
T ss_dssp CCSSCCCC--CCGGGGGSCTTEEEECCSSS-CCH
T ss_pred cCCCccee--cCHHHhcCCCCCEEEeeCCc-CCC
Confidence 77765541 11111136667777777666 444
No 189
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.13 E-value=6.5e-08 Score=115.21 Aligned_cols=178 Identities=11% Similarity=-0.034 Sum_probs=105.7
Q ss_pred CCcceeeecCcccchHHHH--HcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSIIH--LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
++++.|+|+++........ ..+++|++|++++|.....-. .....++++|+.|+|+ ++ .+...... ...++++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls--~N-~l~~~~p~-~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLG--SS-KIYFLHPD-AFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECT--TC-CCCEECTT-SSCSCSS
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECC--CC-cCcccCHh-HccCCcc
Confidence 6788999988865432211 267889999998884322100 1123568889999995 23 44322111 2245788
Q ss_pred CCEEEecCCCCCCHHHHHH-HHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCC--CCHHHHHHHHhcCCC
Q 003227 181 LKKLRLSGIRDICGDAINA-LAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSN--MKWGVVSQVWHKLPK 254 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~-l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~--i~~~~l~~~~~~~~~ 254 (837)
|++|+|+++ .+++..... ....+++|++|++++|...+. ..+..+++|++|++++|.. +....+..+.. ++
T Consensus 99 L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~ 175 (844)
T 3j0a_A 99 LFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KT 175 (844)
T ss_dssp CCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CS
T ss_pred cCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--Cc
Confidence 999999888 555422221 123578899999998843322 4578889999999988732 12233333221 67
Q ss_pred ccEEEeccCCCCHHHHHHHHhcCc------ccccccccccc
Q 003227 255 LVGLDVSRTDVGPITISRLLTSSK------SLKVLCALNCP 289 (837)
Q Consensus 255 L~~L~l~~~~i~~~~l~~l~~~~~------~L~~l~l~~c~ 289 (837)
|+.|++++|.+.......+ ..|+ .|+.|++++|.
T Consensus 176 L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp SCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCC
T ss_pred cceEECCCCccccccccch-hhcCCccccCceeEEecCCCc
Confidence 8888888875543111100 1122 37888888774
No 190
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.12 E-value=5.7e-07 Score=101.96 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=107.5
Q ss_pred hCCCcceeeecCcccchHHHHH--cCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhc
Q 003227 101 RCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITD-ATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~ 177 (837)
.+++|+.|+++++...+..... .+++|++|++++|. ++. ..+......+++|+.|+++ ++ .++...-......
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~--~N-~l~~~~~~~~~~~ 426 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVS--LN-SLNSHAYDRTCAW 426 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECT--TS-CCBSCCSSCCCCC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECC--CC-cCCCccChhhhcC
Confidence 5688999999999777643332 68899999999986 543 2334445678999999996 23 3332111112345
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhC-CCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCC
Q 003227 178 CPKLKKLRLSGIRDICGDAINALAKLC-PNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~ 254 (837)
+++|++|+++++ .+++... ... ++|++|++++| .++. ..+..+++|++|++++|. ++.-. ......+++
T Consensus 427 l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~-~~~~~~l~~ 498 (562)
T 3a79_B 427 AESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVP-DGVFDRLTS 498 (562)
T ss_dssp CTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCC-TTSTTTCTT
T ss_pred cccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCC-HHHHhcCCC
Confidence 799999999999 6765322 233 69999999999 5553 344588999999999984 43211 112467899
Q ss_pred ccEEEeccCCCC
Q 003227 255 LVGLDVSRTDVG 266 (837)
Q Consensus 255 L~~L~l~~~~i~ 266 (837)
|+.|++++|.+.
T Consensus 499 L~~L~l~~N~~~ 510 (562)
T 3a79_B 499 LQYIWLHDNPWD 510 (562)
T ss_dssp CCCEECCSCCBC
T ss_pred CCEEEecCCCcC
Confidence 999999998654
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=6.3e-08 Score=108.69 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=47.1
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccE
Q 003227 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~ 257 (837)
.|+.|+|+++ .++. +.. ...+++|++|++++| .++. ..+..+++|++|+|++|. ++. +. -...+++|+.
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~--lp-~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LEN--VD-GVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCC--CG-GGTTCSSCCE
T ss_pred CceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCC--Cc-ccCCCCCCcE
Confidence 4555666555 3332 222 223455666666655 2322 245555666666665552 221 11 2234555666
Q ss_pred EEeccCCCCHHHHHHHHhcCcccccccccccc
Q 003227 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 258 L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
|+|++|.++.......+..+++|+.|++++|+
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 66666554322100111235566666666554
No 192
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.10 E-value=1.9e-07 Score=111.18 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=5.9
Q ss_pred Ccccccccccccc
Q 003227 277 SKSLKVLCALNCP 289 (837)
Q Consensus 277 ~~~L~~l~l~~c~ 289 (837)
+++|+.|++++|.
T Consensus 361 l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 361 LEKLQTLDLRDNA 373 (844)
T ss_dssp CCCCCEEEEETCC
T ss_pred CCCCCEEECCCCC
Confidence 4444444444443
No 193
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.10 E-value=2.4e-05 Score=77.49 Aligned_cols=183 Identities=13% Similarity=0.035 Sum_probs=133.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcC-CCCHHHHHHHHHHHHhhcCChh--h
Q 003227 557 HALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR-SPHEGVRQEAAGALWNLSFDDR--N 633 (837)
Q Consensus 557 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~--~ 633 (837)
+.+.+.+.+.+ ...+..|+..|..+........ ... -..+++.|...+. +.+..++..|+.++..|+..-. .
T Consensus 18 ~~l~~~l~s~~-w~~R~~a~~~L~~l~~~~~~~~--~~~--~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 18 KDFYDKLEEKK-WTLRKESLEVLEKLLTDHPKLE--NGE--YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp TTHHHHHTCSS-HHHHHHHHHHHHHHHHHCSSBC--CCC--CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHhhhccCC-HHHHHHHHHHHHHHHccCCCCC--CCC--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 34667777664 8899999999999987521111 011 1366788888894 8999999999999999986421 1
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 634 REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 634 ~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
...+ ...++.++..+.+ .+..+|..|..+|..+...... ...++.+...+++.++.++..++..|..+.
T Consensus 93 ~~~~--~~ilp~ll~~l~d---~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 93 SNYA--SACVPSLLEKFKE---KKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARAL 161 (242)
T ss_dssp HHHH--HHHHHHHHHGGGC---CCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 1211 1257788888876 8899999999999998765321 125677888888899999999999999965
Q ss_pred C-C-cc-cHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 714 F-N-PG-NALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 714 ~-~-~~-~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
. . +. .-...+ ...+|.|+.++.+++ +.+|..|..+++.+...
T Consensus 162 ~~~~~~~~~~~~l-~~l~p~l~~~l~D~~-~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 162 TRTQPTALNKKLL-KLLTTSLVKTLNEPD-PTVRDSSAEALGTLIKL 206 (242)
T ss_dssp TTCCGGGCCHHHH-HHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccHHHH-HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHH
Confidence 4 3 22 111222 256889999998775 88999999999998754
No 194
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.09 E-value=4.2e-07 Score=88.01 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=27.1
Q ss_pred CCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCC
Q 003227 204 CPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDV 265 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i 265 (837)
+++|++|++++|. ++. ..+..+++|++|++++|. ++... ......+++|+.|++++|.+
T Consensus 99 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 99 LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSCCB
T ss_pred ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeC-HHHhccCCCccEEEecCCCe
Confidence 4555566555552 222 224455556666665542 22110 11123455566666655543
No 195
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.07 E-value=4.3e-05 Score=78.65 Aligned_cols=273 Identities=14% Similarity=-0.004 Sum_probs=155.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhC
Q 003227 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAG 510 (837)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g 510 (837)
..+++++.++|...++..--.+..++..++- .+ =++..+.+=++++++.++..|+++|+++...+-. +.
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~-~~----- 139 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML-QA----- 139 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH-HH-----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH-HH-----
Confidence 4678889999999999888888888775211 11 1477788888899999999999999999875411 11
Q ss_pred CHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCC
Q 003227 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590 (837)
Q Consensus 511 ~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (837)
..+.+.+.+ .+.++-+++.|+-+..+|.... ..+++ +.+..+-+++.+.+ +.++.+|+.+|..+...+
T Consensus 140 l~~~lk~~L---~d~~pyVRk~A~l~~~kL~~~~---pe~v~-~~~~~l~~ll~d~n-~~V~~~Al~lL~ei~~~d---- 207 (355)
T 3tjz_B 140 IERYMKQAI---VDKVPSVSSSALVSSLHLLKCS---FDVVK-RWVNEAQEAASSDN-IMVQYHALGLLYHVRKND---- 207 (355)
T ss_dssp HHHHHHHHH---TCSSHHHHHHHHHHHHHHTTTC---HHHHH-TTHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHc---CCCCHHHHHHHHHHHHHHhccC---HHHHH-HHHHHHHHHhcCCC-ccHHHHHHHHHHHHHhhc----
Confidence 233455555 5689999999999999887542 22333 68888888888775 899999999999998631
Q ss_pred cccchhhccchHHHHHHHcCCC---CHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q 003227 591 NNSAVGQEAGALEALVQLTRSP---HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGA 667 (837)
Q Consensus 591 ~~~~~~~~~~~i~~L~~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~ 667 (837)
...+..++..+... ++-.+-.-+..+..+...++.. .....++.+...|++ .++.|..+|+.+
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~---~~~aVvyEa~k~ 273 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRN---KHEMVVYEAASA 273 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCC---SSHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcC---CChHHHHHHHHH
Confidence 12455566555432 4544444444444444433111 112345666666766 899999999999
Q ss_pred HHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHH
Q 003227 668 LWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (837)
Q Consensus 668 L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~ 746 (837)
+..+...+.. +. ..++..|..++.++++.+|..|+..|..+.. +|..-. ..-..+.+++.+++ ..+...
T Consensus 274 I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d~n-~sI~t~ 343 (355)
T 3tjz_B 274 IVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTDAN-RSIATL 343 (355)
T ss_dssp HTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred HHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccCCc-HhHHHH
Confidence 9998653211 11 2356677788889999999999999998876 332221 12335667777765 444444
Q ss_pred HHHH
Q 003227 747 AALA 750 (837)
Q Consensus 747 a~~a 750 (837)
|..+
T Consensus 344 Aitt 347 (355)
T 3tjz_B 344 AITT 347 (355)
T ss_dssp ----
T ss_pred HHHH
Confidence 4433
No 196
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.04 E-value=0.0016 Score=57.77 Aligned_cols=214 Identities=14% Similarity=0.100 Sum_probs=150.2
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (837)
+...+..++..| .++-..++++|+.++.+++.. ++..+.+ +..|+.+++.+.....-...+++++.++..
T Consensus 30 d~~~l~~lI~~L---DDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i- 100 (253)
T 2db0_A 30 DESVLKKLIELL---DDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE- 100 (253)
T ss_dssp CHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHh---ccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh-
Confidence 344577778888 446678999999999999984 5555544 566777777665566666777888888864
Q ss_pred CCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
++ +.+ .+.+|.+..-.+-.++.++.+...+|..++.. +..-.. .+.-+..++.+ ++..=+..|+
T Consensus 101 --~P---e~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smlts---kd~~Dkl~aL 165 (253)
T 2db0_A 101 --KP---ELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSS---KNREDKLTAL 165 (253)
T ss_dssp --CH---HHH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSC---SSHHHHHHHH
T ss_pred --CH---HHH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcC---CChHHHHHHH
Confidence 22 121 35677777777888999999999999988764 333322 45667778876 7777777777
Q ss_pred HHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHH
Q 003227 666 GALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMAR 744 (837)
Q Consensus 666 ~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~ 744 (837)
..+.-+..+. ..-+ ...+|.|..+|++.+.-|+..|..+|.+++. +|.-|..+ ...++-+.+. ++.++
T Consensus 166 nFi~alGen~---~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~-S~lv~ 234 (253)
T 2db0_A 166 NFIEAMGENS---FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDT-SSLVN 234 (253)
T ss_dssp HHHHTCCTTT---HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCS-CHHHH
T ss_pred HHHHHHhccC---cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCc-HHHHH
Confidence 7776665431 1111 2368999999999999999999999999997 45444222 2344455544 68888
Q ss_pred HHHHHHHHHhhC
Q 003227 745 FMAALALAYMFD 756 (837)
Q Consensus 745 ~~a~~aL~~l~~ 756 (837)
.....+|..+.-
T Consensus 235 ~~V~egL~rl~l 246 (253)
T 2db0_A 235 KTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887643
No 197
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.04 E-value=1.9e-06 Score=97.43 Aligned_cols=34 Identities=26% Similarity=0.151 Sum_probs=17.7
Q ss_pred CCccEEEeccCCCCHHHHHHHHhcCccccccccccccccc
Q 003227 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (837)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~ 292 (837)
++|+.|++++|.++. +...+++|+.|++++|. ++
T Consensus 221 ~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~-L~ 254 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-----LPVLPSELKELMVSGNR-LT 254 (622)
T ss_dssp TTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CS
T ss_pred CCCCEEEccCCccCc-----CCCCCCcCcEEECCCCC-CC
Confidence 556666666655432 11235566666666654 44
No 198
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.01 E-value=2.9e-07 Score=89.17 Aligned_cols=146 Identities=11% Similarity=0.058 Sum_probs=99.1
Q ss_pred CCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
++|+.|+++++....... -..+++|++|+++++. ++.. .......+++|++|++++ + .++... ......+++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~--n-~l~~~~-~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSL-PNGVFNKLTSLTYLNLST--N-QLQSLP-NGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS--S-CCCCCC-TTTTTTCTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCcc-ChhhcCCCCCcCEEECCC--C-cCCccC-HhHhcCccC
Confidence 679999999987653222 1267999999999975 4421 112235689999999963 3 444211 112346899
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccE
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~ 257 (837)
|++|+++++ .++... ......+++|++|++++|. ++. ..+..+++|++|++++|... ..+++|+.
T Consensus 102 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~ 169 (208)
T 2o6s_A 102 LKELALNTN-QLQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRY 169 (208)
T ss_dssp CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC---------CCTTTTHH
T ss_pred CCEEEcCCC-cCcccC-HhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee---------cCCCCHHH
Confidence 999999988 554311 1123457999999999984 443 34678999999999998433 35778888
Q ss_pred EEeccCCCC
Q 003227 258 LDVSRTDVG 266 (837)
Q Consensus 258 L~l~~~~i~ 266 (837)
|+++++.++
T Consensus 170 L~~~~n~~~ 178 (208)
T 2o6s_A 170 LSEWINKHS 178 (208)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 888776443
No 199
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.01 E-value=4.2e-05 Score=75.79 Aligned_cols=180 Identities=15% Similarity=0.063 Sum_probs=131.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCCCcc
Q 003227 515 LVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLAR-SCKFEGVQEQAARALANLAAHGDSNSNN 592 (837)
Q Consensus 515 L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (837)
+.+.+ .+.+...+..|+..|..+... +.....-. ...++.|...+. +. +..++..|+.++..++..- ...
T Consensus 20 l~~~l---~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l---~~~ 91 (242)
T 2qk2_A 20 FYDKL---EEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDS-NVVLVAMAGKCLALLAKGL---AKR 91 (242)
T ss_dssp HHHHH---TCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHH---GGG
T ss_pred HHhhh---ccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHH---hhh
Confidence 56666 468899999999999998864 33210000 134677788885 65 4899999999999999631 110
Q ss_pred cchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q 003227 593 SAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (837)
Q Consensus 593 ~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~ 672 (837)
..-.-..+++.++..+.++++.+|..|..+|..+....... ..++.+...+.+ .++.+|..++..|..+.
T Consensus 92 -~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~---~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 92 -FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE------AQQESIVESLSN---KNPSVKSETALFIARAL 161 (242)
T ss_dssp -GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTC---SCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcC---CChHHHHHHHHHHHHHH
Confidence 11122467899999999999999999999999988764321 136677777776 79999999999999965
Q ss_pred cC--cc--chhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 673 VS--EA--NCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 673 ~~--~~--~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
.. ++ ....+ ...++.|+.++.+.++++|..|..++..++.
T Consensus 162 ~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 162 TRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 43 22 11222 2468889999999999999999999999884
No 200
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.99 E-value=4.4e-07 Score=96.32 Aligned_cols=162 Identities=17% Similarity=0.109 Sum_probs=84.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhC
Q 003227 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (837)
Q Consensus 125 ~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 204 (837)
+.++.|+|+++. ++.-....+...+++|+.|+|++ +.++..... ....+++|++|+|+++ .++.-. ......+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~---N~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSH---NHLNFISSE-AFVPVPNLRYLDLSSN-HLHTLD-EFLFSDL 111 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCS---SCCCEECTT-TTTTCTTCCEEECCSS-CCCEEC-TTTTTTC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCC---CcCCccChh-hccCCCCCCEEECCCC-cCCcCC-HHHhCCC
Confidence 346666666653 33211111111466777777742 233321111 1234677777777776 343211 1112346
Q ss_pred CCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHH--HhcCCCccEEEeccCCCCHHHHHHHHhcCcc
Q 003227 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQV--WHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~--~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~ 279 (837)
++|++|+|++|. ++. ..+..+++|++|+|++|. ++.-....+ ...+++|+.|+|++|.++.-....+. .++.
T Consensus 112 ~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~ 188 (361)
T 2xot_A 112 QALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ-KLPA 188 (361)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH-HSCH
T ss_pred cCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh-hccH
Confidence 788888888873 433 456778888888888763 322111111 13578888888888766432222221 2444
Q ss_pred --cccccccccccccchhH
Q 003227 280 --LKVLCALNCPVLEEENN 296 (837)
Q Consensus 280 --L~~l~l~~c~~i~~~~~ 296 (837)
++.|++.+++-.-|..+
T Consensus 189 ~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 189 WVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HHHTTEECCSSCEECCHHH
T ss_pred hhcceEEecCCCccCCcCc
Confidence 47788888774444443
No 201
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.99 E-value=1.1e-06 Score=98.10 Aligned_cols=165 Identities=15% Similarity=0.118 Sum_probs=107.4
Q ss_pred hCCCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 101 RCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
.+.+|+.|+++++.... +....+++|++|++++|. ++. +. ..+++|++|++++ + .++. +.. ...+
T Consensus 57 ~~~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~--N-~l~~--ip~---l~~~ 121 (571)
T 3cvr_A 57 LINQFSELQLNRLNLSS-LPDNLPPQITVLEITQNA-LIS--LP---ELPASLEYLDACD--N-RLST--LPE---LPAS 121 (571)
T ss_dssp HHTTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSC-CSC--CC---CCCTTCCEEECCS--S-CCSC--CCC---CCTT
T ss_pred ccCCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCC-Ccc--cc---cccCCCCEEEccC--C-CCCC--cch---hhcC
Confidence 34689999999986654 222235899999999986 552 22 4579999999963 3 4443 211 2239
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEe
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l 260 (837)
|++|+++++ .++. +.. .+++|++|++++|. ++.-.- .+++|++|++++|. ++. +..+ .++|+.|+|
T Consensus 122 L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~-L~~--lp~l---~~~L~~L~L 187 (571)
T 3cvr_A 122 LKHLDVDNN-QLTM--LPE---LPALLEYINADNNQ-LTMLPE-LPTSLEVLSVRNNQ-LTF--LPEL---PESLEALDV 187 (571)
T ss_dssp CCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSC-CSC--CCCC---CTTCCEEEC
T ss_pred CCEEECCCC-cCCC--CCC---cCccccEEeCCCCc-cCcCCC-cCCCcCEEECCCCC-CCC--cchh---hCCCCEEEC
Confidence 999999998 5554 222 57999999999984 443111 57899999999984 332 1112 288999999
Q ss_pred ccCCCCHHH-HH-HHHhcCcccccccccccccccchh
Q 003227 261 SRTDVGPIT-IS-RLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 261 ~~~~i~~~~-l~-~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
++|.++.-. +. .+....+.|+.|++++|. |+...
T Consensus 188 s~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~lp 223 (571)
T 3cvr_A 188 STNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIP 223 (571)
T ss_dssp CSSCCSSCCCCC--------CCEEEECCSSC-CCCCC
T ss_pred cCCCCCchhhHHHhhhcccccceEEecCCCc-ceecC
Confidence 998775210 10 111122334999999986 66433
No 202
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.97 E-value=4.6e-06 Score=91.18 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=46.2
Q ss_pred CCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCC
Q 003227 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~ 182 (837)
++|+.|+++++..... ....++|++|++++|. ++. +.. ...+++|++|++++ + .++. +....++|+
T Consensus 111 ~~L~~L~l~~n~l~~l--~~~~~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~--N-~l~~-----lp~~~~~L~ 176 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKAL--SDLPPLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDN--N-SLKK-----LPDLPPSLE 176 (454)
T ss_dssp TTCCEEECCSSCCSCC--CSCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCS--S-CCSC-----CCCCCTTCC
T ss_pred CCCcEEECCCCccCcc--cCCCCCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCC--C-cCcc-----cCCCccccc
Confidence 4566666666543320 0012577777777765 332 222 34566777777742 2 3321 112234666
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCCccEEEecCC
Q 003227 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDC 215 (837)
Q Consensus 183 ~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 215 (837)
+|+++++ .++. +..+ ..+++|++|++++|
T Consensus 177 ~L~L~~n-~l~~--l~~~-~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 177 FIAAGNN-QLEE--LPEL-QNLPFLTAIYADNN 205 (454)
T ss_dssp EEECCSS-CCSS--CCCC-TTCTTCCEEECCSS
T ss_pred EEECcCC-cCCc--Cccc-cCCCCCCEEECCCC
Confidence 6666665 3332 1111 23455555555555
No 203
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.95 E-value=1.5e-06 Score=84.82 Aligned_cols=48 Identities=33% Similarity=0.495 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccccCCCC
Q 003227 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRA 87 (837)
Q Consensus 40 ~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~l~~ 87 (837)
|++||+|++.+||+||+.+|+++++.|||+|+.++.++.+|+++-++.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 688999999999999999999999999999999999999998765554
No 204
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.95 E-value=4.8e-06 Score=91.01 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=97.3
Q ss_pred CCcceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCC
Q 003227 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~ 182 (837)
++|+.|+++++.... +....++|++|++++|. ++. +....++|++|++++ + .++. +.. ...+++|+
T Consensus 91 ~~L~~L~l~~n~l~~--lp~~~~~L~~L~l~~n~-l~~-----l~~~~~~L~~L~L~~--n-~l~~--lp~-~~~l~~L~ 156 (454)
T 1jl5_A 91 PHLESLVASCNSLTE--LPELPQSLKSLLVDNNN-LKA-----LSDLPPLLEYLGVSN--N-QLEK--LPE-LQNSSFLK 156 (454)
T ss_dssp TTCSEEECCSSCCSS--CCCCCTTCCEEECCSSC-CSC-----CCSCCTTCCEEECCS--S-CCSS--CCC-CTTCTTCC
T ss_pred CCCCEEEccCCcCCc--cccccCCCcEEECCCCc-cCc-----ccCCCCCCCEEECcC--C-CCCC--Ccc-cCCCCCCC
Confidence 578888888876554 11235789999998875 332 111226899999962 3 4432 222 34578999
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEecc
Q 003227 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (837)
Q Consensus 183 ~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~ 262 (837)
+|+++++ .++. +....++|++|++++|....-..+..+++|++|++++|. ++. +....++|+.|++++
T Consensus 157 ~L~l~~N-~l~~-----lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 157 IIDVDNN-SLKK-----LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGN 224 (454)
T ss_dssp EEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCS
T ss_pred EEECCCC-cCcc-----cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcC
Confidence 9999988 4543 122346899999999843332356778888888888873 221 112234677777777
Q ss_pred CCCCHHHHHHHHhcCcccccccccccc
Q 003227 263 TDVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 263 ~~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
|.++ .+.. ...+++|+.|++++|.
T Consensus 225 n~l~--~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 225 NILE--ELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp SCCS--SCCC-CTTCTTCCEEECCSSC
T ss_pred CcCC--cccc-cCCCCCCCEEECCCCc
Confidence 6554 1111 2246667777776664
No 205
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.91 E-value=3.7e-07 Score=87.63 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=82.0
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh
Q 003227 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 202 (837)
.+++|++|++++|. ++. +. ....+++|+.|++++ + .++. +......+++|++|+++++ .+++ +..+.
T Consensus 46 ~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l~~--n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~~~- 112 (198)
T 1ds9_A 46 TLKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGR--N-LIKK--IENLDAVADTLEELWISYN-QIAS--LSGIE- 112 (198)
T ss_dssp HTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEEEE--E-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHHHH-
T ss_pred cCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEECCC--C-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCccc-
Confidence 57888889888875 333 22 234578899999962 3 4432 2223344678999999988 5554 33444
Q ss_pred hCCCccEEEecCCCCCCh----HHhhCCCCCCEeeccCCCCCCH--------HHHHHHHhcCCCccEEE
Q 003227 203 LCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKW--------GVVSQVWHKLPKLVGLD 259 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~----~~l~~l~~L~~L~ls~~~~i~~--------~~l~~~~~~~~~L~~L~ 259 (837)
.+++|++|++++| .+++ ..+..+++|++|++++|..... .....+...+++|+.||
T Consensus 113 ~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 4589999999998 4443 2478899999999998732111 11233457799999998
No 206
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.91 E-value=4.7e-07 Score=88.40 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=33.2
Q ss_pred CCCccEEEecCCCCCC--hHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccc
Q 003227 204 CPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~--~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 281 (837)
+++|++|++++|...+ ...+..+++|++|++++|. ++... ......+++|+.|+|++|.++.-.- .....+++|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~ 156 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVG-NDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLS 156 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBC-TTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCC
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeEC-HhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCC
Confidence 3455555555442111 1224445555555555442 21110 0111234555555555544331100 0111345555
Q ss_pred cccccccc
Q 003227 282 VLCALNCP 289 (837)
Q Consensus 282 ~l~l~~c~ 289 (837)
.|++++++
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 55555555
No 207
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.91 E-value=0.0012 Score=58.52 Aligned_cols=211 Identities=15% Similarity=0.085 Sum_probs=155.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc-CCCch
Q 003227 470 GINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCS 547 (837)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~-~~~~~ 547 (837)
.+..++.+|.+.-=.++..|...+..++.. ++..+.+ +..|+-+++ .++.-.+-...+.+++.++. .|+..
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~--ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLK--KSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHH--HCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHh--hcccCchHHHHHHHHhHHHHhCHHHH
Confidence 477788888777778999999999999964 4544443 345677776 46777776777888888875 34332
Q ss_pred HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhh
Q 003227 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (837)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 627 (837)
. +.+|.+..-+.-+ ++.++.....+|..++.. ++. . -.+++..+..++.+++..=+..|+..+..+
T Consensus 106 ~-----~vVp~lfanyrig-d~kikIn~~yaLeeIara---nP~---l--~~~v~rdi~smltskd~~Dkl~aLnFi~al 171 (253)
T 2db0_A 106 K-----SMIPVLFANYRIG-DEKTKINVSYALEEIAKA---NPM---L--MASIVRDFMSMLSSKNREDKLTALNFIEAM 171 (253)
T ss_dssp H-----HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHH---CHH---H--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred H-----hhHHHHHHHHhcC-CccceecHHHHHHHHHHh---ChH---H--HHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 2 2466666666667 499999999999999885 341 1 246788899999999987788888888777
Q ss_pred cCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-CccchhhhhccCChHHHHHHhccCCHHHHHHHH
Q 003227 628 SFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSEAEDVHETAA 706 (837)
Q Consensus 628 s~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~-~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~ 706 (837)
..+.. .++ .-.++.|..+|.+ .+.-+|..|+.+|.+++. ++..|+. +..-++-+.+.++.++..+.
T Consensus 172 Gen~~--~yv--~PfLprL~aLL~D---~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~ 238 (253)
T 2db0_A 172 GENSF--KYV--NPFLPRIINLLHD---GDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVK 238 (253)
T ss_dssp CTTTH--HHH--GGGHHHHHGGGGC---SSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHH
T ss_pred hccCc--ccc--CcchHHHHHHHcC---cchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHH
Confidence 76521 222 2358889999987 999999999999999996 4666554 33345667788899999999
Q ss_pred HHHHHHcC
Q 003227 707 GALWNLAF 714 (837)
Q Consensus 707 ~~L~~l~~ 714 (837)
.+|..+..
T Consensus 239 egL~rl~l 246 (253)
T 2db0_A 239 EGISRLLL 246 (253)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 208
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.86 E-value=8.4e-07 Score=86.61 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=96.5
Q ss_pred ceeeecCcccchHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEE
Q 003227 106 QKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLR 185 (837)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~ 185 (837)
+.++++++.... +.....+.+++|+++++. ++..........+++|++|+++ .+.++...-. ....+++|++|+
T Consensus 14 ~~l~~s~n~l~~-iP~~~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~---~N~i~~i~~~-~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFS---NNKITDIEEG-AFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCSS-CCSCCCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECC---SSCCCEECTT-TTTTCTTCCEEE
T ss_pred CEeEeCCCCccc-CccCCCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECC---CCcCCEECHH-HhCCCCCCCEEE
Confidence 466666654432 111234578999999976 4432111224578999999996 2344432111 224589999999
Q ss_pred ecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCC--hHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccC
Q 003227 186 LSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT 263 (837)
Q Consensus 186 l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~ 263 (837)
|+++ .++...-. ....+++|++|++++|...+ ...+..+++|++|++++|. ++... ......+++|+.|++++|
T Consensus 88 Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 88 LTSN-RLENVQHK-MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVA-PGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCSS-CCCCCCGG-GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBC-TTTTTTCTTCCEEECCSC
T ss_pred CCCC-ccCccCHh-HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEEC-HHHhcCCCCCCEEEecCc
Confidence 9998 45432111 23457999999999984322 2557889999999999973 33221 122356899999999997
Q ss_pred CC
Q 003227 264 DV 265 (837)
Q Consensus 264 ~i 265 (837)
.+
T Consensus 164 ~l 165 (220)
T 2v70_A 164 PF 165 (220)
T ss_dssp CE
T ss_pred CC
Confidence 65
No 209
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.86 E-value=2.4e-06 Score=83.91 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=13.6
Q ss_pred CCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCC
Q 003227 204 CPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGT 237 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~ 237 (837)
+++|++|++++|. ++. ..+..+++|++|++++|
T Consensus 111 l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 111 LVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS
T ss_pred chhhCeEeccCCc-ccccCcccccCCCCCEEECCCC
Confidence 3444444444442 221 22334444444444443
No 210
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.84 E-value=2.9e-06 Score=83.40 Aligned_cols=149 Identities=17% Similarity=0.100 Sum_probs=95.8
Q ss_pred CcccccCCCCCcCCHHHHHHHHHhCCCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCe
Q 003227 78 CLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALES 155 (837)
Q Consensus 78 ~~~~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~ 155 (837)
|.|..++.+...++.-- ....++|+.|+|+++....... -..+++|++|+++++. ++.-. ......+++|+.
T Consensus 19 Cs~~~v~c~~~~l~~ip----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~ 92 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVP----AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALP-VGVFDSLTQLTV 92 (229)
T ss_dssp EETTEEECTTSCCSSCC----SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCE
T ss_pred EeCCEeEccCCCcCccC----CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcC-hhhcccCCCcCE
Confidence 45677776653321100 0112789999999997654322 1267899999999986 43211 122356899999
Q ss_pred EEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEe
Q 003227 156 LQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFL 232 (837)
Q Consensus 156 L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L 232 (837)
|++++ + .++... ......+++|+.|+|+++ .++. +..-...+++|++|++++| .++. ..+..+++|++|
T Consensus 93 L~Ls~--N-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 93 LDLGT--N-QLTVLP-SAVFDRLVHLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp EECCS--S-CCCCCC-TTTTTTCTTCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred EECCC--C-cCCccC-hhHhCcchhhCeEeccCC-cccc--cCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 99963 3 444211 112346899999999998 5552 2222356799999999998 4443 346778888888
Q ss_pred eccCCCCC
Q 003227 233 SVAGTSNM 240 (837)
Q Consensus 233 ~ls~~~~i 240 (837)
++++|...
T Consensus 165 ~l~~N~~~ 172 (229)
T 3e6j_A 165 YLFGNPWD 172 (229)
T ss_dssp ECTTSCBC
T ss_pred EeeCCCcc
Confidence 88887543
No 211
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.84 E-value=9.4e-07 Score=86.25 Aligned_cols=83 Identities=11% Similarity=0.191 Sum_probs=35.0
Q ss_pred CCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccc
Q 003227 204 CPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L 280 (837)
+++|++|+|++|. ++. ..+..+++|++|++++|. ++... ......+++|+.|+|++|.++.-.- .....+++|
T Consensus 79 l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L 154 (220)
T 2v9t_B 79 LRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANK-INCLR-VDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAI 154 (220)
T ss_dssp CSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTC
T ss_pred CcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCC-CCEeC-HHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCC
Confidence 3555555555542 221 223445555555555542 21110 0112334555555555554321110 011134556
Q ss_pred cccccccccc
Q 003227 281 KVLCALNCPV 290 (837)
Q Consensus 281 ~~l~l~~c~~ 290 (837)
+.|++++++-
T Consensus 155 ~~L~L~~N~~ 164 (220)
T 2v9t_B 155 QTMHLAQNPF 164 (220)
T ss_dssp CEEECCSSCE
T ss_pred CEEEeCCCCc
Confidence 6666665553
No 212
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.80 E-value=3.7e-07 Score=105.43 Aligned_cols=120 Identities=17% Similarity=0.118 Sum_probs=77.6
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcC
Q 003227 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252 (837)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~ 252 (837)
..+++|+.|+++++... ..........+++|++|++++| .++. ..+.++++|++|+|++|. ++.-. ......+
T Consensus 466 ~~~~~L~~L~Ls~N~~~-~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~-~~~~~~l 541 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLD-TFPYKCL 541 (635)
T ss_dssp TTCTTCCEEECTTCEEG-GGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCBCC-CGGGTTC
T ss_pred ccchhhhhhhhhhcccc-cccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCc-CCCCC-hhHHhCC
Confidence 45678888888877322 1111122345789999999998 4443 457889999999999873 33211 1124568
Q ss_pred CCccEEEeccCCCCHHHHHHHHhcC-cccccccccccccccchhHHHHH
Q 003227 253 PKLVGLDVSRTDVGPITISRLLTSS-KSLKVLCALNCPVLEEENNISAV 300 (837)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~l~l~~c~~i~~~~~~~~~ 300 (837)
++|+.|+|++|.++.-.-..+ ..+ ++|+.|++++++-.-|..+..|.
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~l-~~l~~~L~~L~L~~Np~~C~C~~~~~~ 589 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDFACTCEHQSFL 589 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSCT-TCCCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred CCCCEEECCCCcCCCCCHHHH-HhhhCcCCEEEeeCCCCcccCCcHHHH
Confidence 899999999987643211111 123 67999999988855555555554
No 213
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.78 E-value=0.00073 Score=78.67 Aligned_cols=297 Identities=11% Similarity=0.001 Sum_probs=190.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc----cchHHHH
Q 003227 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE----EHKGAIA 507 (837)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~----~~~~~l~ 507 (837)
.+++.+...+..-+..++..+.++...+..- .....+.+..+.+.+.+.... +.|+.++..|+... ..-..++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 3555555544555667777777765422000 011113466666666554333 89999999998543 2212222
Q ss_pred hhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
+.++.++... .+....++..|-.++..+.. +++.. ...+|.|+..+.+...-..+..|+.++..++..
T Consensus 95 --~~~~~~~~~~---~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 95 --QLVPAICTNA---GNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp --TTHHHHHHHT---TCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 3566666666 56778899888877777765 33322 235888999888765577888999999999863
Q ss_pred CCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
.+ .+....=.+++|.+-..+.+..+++..+|..++..++.--.|+.. ...++.|+..+.. ++ + ...+.
T Consensus 165 ---~~-~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~---p~-~-~~~~~ 232 (986)
T 2iw3_A 165 ---AK-DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIAD---PT-E-VPETV 232 (986)
T ss_dssp ---SH-HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHC---TT-H-HHHHH
T ss_pred ---hH-HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcC---hh-h-hHHHH
Confidence 22 222223357888888899999999999999998887764222211 1358888888875 42 2 44455
Q ss_pred HHHHhcccCcc-chhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHH--HHHcCCHHHHHHHHhcCCcHH
Q 003227 666 GALWGLSVSEA-NCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALR--IVEEGGVPALVHLCSSSGSKM 742 (837)
Q Consensus 666 ~~L~~l~~~~~-~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~--i~~~~~i~~L~~ll~~~~~~~ 742 (837)
..|..-+.-.+ ....+.- .+|-|.+-|...+..+++.++.++-|||.-.++... -.-...+|.+.........|+
T Consensus 233 ~~l~~~tfv~~v~~~~l~~--~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 233 HLLGATTFVAEVTPATLSI--MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHTTCCCCSCCCHHHHHH--HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHhhcCeeEeeecchhHHH--HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 55655443211 1111111 245566667778899999999999999983333322 233567888888887766799
Q ss_pred HHHHHHHHHHHhh
Q 003227 743 ARFMAALALAYMF 755 (837)
Q Consensus 743 ~~~~a~~aL~~l~ 755 (837)
+|+.|..|+..|.
T Consensus 311 ~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 311 AREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999884
No 214
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00026 Score=69.92 Aligned_cols=186 Identities=9% Similarity=-0.011 Sum_probs=126.3
Q ss_pred CCCCHHHHHHHHHHHHH-hhc-CCCchHHHHh-cCcHHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhc
Q 003227 523 SSGGDGVLERAAGALAN-LAA-DDKCSMEVAL-AGGVHALVMLA-RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~-l~~-~~~~~~~l~~-~g~i~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 598 (837)
.+.+..-+..|+..|.. +.. .++....-.+ ...+..|.+.+ .+. +..++..|+.+|..++..-. .+.... -..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~-~~~f~~-~y~ 102 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICDKLK-TPGFSK-DYV 102 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHC-TTTSCH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhcc-cccccH-HHH
Confidence 46888899999999999 864 3332200001 13467778888 455 48899999999999986421 011110 112
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh-hhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccc
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDD-RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN 677 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~ 677 (837)
..+++.++..+++..+.+++.+..++..++.+. +....-.-...++.|+..+.+ .++.+|+.++.+|..+......
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~---k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH---KTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999888888776532 100000000136677777776 7899999999999998854221
Q ss_pred h-hhh---hccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 678 C-IAI---GREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 678 ~-~~l---~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
. ..+ .....++.|.+++.+.+++||..|..++..++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 111 114578899999999999999999999999874
No 215
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.71 E-value=2.5e-06 Score=90.37 Aligned_cols=152 Identities=14% Similarity=0.079 Sum_probs=98.1
Q ss_pred CCcceeeecCcccchHHHH---HcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCC
Q 003227 103 MNLQKLRFRGAESADSIIH---LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~ 179 (837)
+.++.|+|+++.+...... ..+++|++|+|+++. ++.-. ......+++|++|+|++ +.++...- .....++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~---N~l~~~~~-~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFIS-SEAFVPVPNLRYLDLSS---NHLHTLDE-FLFSDLQ 112 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCS---SCCCEECT-TTTTTCT
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccC-hhhccCCCCCCEEECCC---CcCCcCCH-HHhCCCc
Confidence 4689999999866542221 167899999999976 44211 11234689999999962 34443111 1234689
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHh---hCCCCCCEeeccCCCCCCHHHHHHHHhcCC
Q 003227 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VAL---GNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l---~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~ 253 (837)
+|+.|+|+++ .++...-.. ...+++|++|+|++|. ++. ..+ ..+++|++|+|++| .++......+ ..++
T Consensus 113 ~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~ 187 (361)
T 2xot_A 113 ALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDL-QKLP 187 (361)
T ss_dssp TCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHH-HHSC
T ss_pred CCCEEECCCC-cccEECHHH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHh-hhcc
Confidence 9999999998 554321112 2357999999999984 443 333 56899999999997 3443222222 3355
Q ss_pred C--ccEEEeccCCC
Q 003227 254 K--LVGLDVSRTDV 265 (837)
Q Consensus 254 ~--L~~L~l~~~~i 265 (837)
. |+.|++++|.+
T Consensus 188 ~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 188 AWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHHTTEECCSSCE
T ss_pred HhhcceEEecCCCc
Confidence 4 48899999865
No 216
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.71 E-value=0.00074 Score=67.33 Aligned_cols=151 Identities=11% Similarity=0.007 Sum_probs=117.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH-hccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHH-hh
Q 003227 432 LLLDLAKSWREGLQSEAAKAIAN-LSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA-DA 509 (837)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~-~~ 509 (837)
.+++-|.+++...++.++.-|.. +..|.+....|+..+|+..|+++....+.+.+..++.+|.++......-..++ ..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 45566777888889999999998 66789999999999999999999999999999999999999998866665555 44
Q ss_pred CCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-chHHHHhc--------C--cHHHHHHHHh--cCCCHHHHHHHH
Q 003227 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALA--------G--GVHALVMLAR--SCKFEGVQEQAA 576 (837)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~--------g--~i~~L~~ll~--~~~~~~~~~~a~ 576 (837)
..+..+..++. +.+..+.+.|+.+|..++...+ +...+.++ | -++.++.+|. +..+.+++..|.
T Consensus 202 ~fI~~lyslv~---s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 202 DTIQWLYTLCA---SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHc---CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 46777777774 5788999999999999987543 33322221 1 3778999997 233589998888
Q ss_pred HHHHHHhcC
Q 003227 577 RALANLAAH 585 (837)
Q Consensus 577 ~~L~~l~~~ 585 (837)
..+..+-..
T Consensus 279 tLIN~lL~~ 287 (339)
T 3dad_A 279 TLINKTLAA 287 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777666554
No 217
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00021 Score=70.64 Aligned_cols=188 Identities=9% Similarity=0.072 Sum_probs=129.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HhcCCCCCCcccchhhc-cchHHHHHHHc-CCCCHHHHHHHHHHHHhhcCChh--h
Q 003227 559 LVMLARSCKFEGVQEQAARALAN-LAAHGDSNSNNSAVGQE-AGALEALVQLT-RSPHEGVRQEAAGALWNLSFDDR--N 633 (837)
Q Consensus 559 L~~ll~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~-~~~i~~L~~lL-~~~~~~~~~~a~~~L~~Ls~~~~--~ 633 (837)
+...+.+.+ ..-+..|+..|.. +... .+.......+ ...+..|...+ ++.+..++..|+.+|..++..-. .
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~---~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQ---TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGG---CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhc---CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 445566654 8888999999999 8743 1111100011 35678888888 78899999999999999885321 1
Q ss_pred -H-HHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHH
Q 003227 634 -R-EAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALW 710 (837)
Q Consensus 634 -~-~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~ 710 (837)
. .+.. -.++.++..+.+ ....++.+|..+|..++.. +.....-.-...++.|...+++.++.+++.++.+|.
T Consensus 97 f~~~y~~--~llp~ll~~l~d---kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 97 FSKDYVS--LVFTPLLDRTKE---KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFN 171 (249)
T ss_dssp SCHHHHH--HHHHHHHHGGGC---CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ccHHHHH--HHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 1 2221 147777777776 7789999999999888753 111110001125677888888899999999999999
Q ss_pred HHcCCcccH-HHH---HHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhC
Q 003227 711 NLAFNPGNA-LRI---VEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (837)
Q Consensus 711 ~l~~~~~~~-~~i---~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~ 756 (837)
.+....... ..+ +....+|.|.+++.+++ +.+|..|..+++.+..
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~-~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ-PAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 998633321 222 22467899999998775 8899999999999864
No 218
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.71 E-value=2.6e-06 Score=83.03 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=45.0
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~ 253 (837)
++++|++|+|+++ .++.-. ..+...+++|++|++++|. ++. ..+..+++|++|++++|. ++... ......++
T Consensus 78 ~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~ 152 (220)
T 2v9t_B 78 GLRSLNSLVLYGN-KITELP-KSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIA-KGTFSPLR 152 (220)
T ss_dssp TCSSCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCT
T ss_pred CCcCCCEEECCCC-cCCccC-HhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEEC-HHHHhCCC
Confidence 4566666666665 333110 1112345677777777763 332 345667777777777763 22111 11224467
Q ss_pred CccEEEeccCCC
Q 003227 254 KLVGLDVSRTDV 265 (837)
Q Consensus 254 ~L~~L~l~~~~i 265 (837)
+|+.|++++|.+
T Consensus 153 ~L~~L~L~~N~~ 164 (220)
T 2v9t_B 153 AIQTMHLAQNPF 164 (220)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEeCCCCc
Confidence 777777777543
No 219
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.71 E-value=3.2e-06 Score=97.55 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=90.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhC
Q 003227 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (837)
Q Consensus 125 ~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 204 (837)
+++++|+|+++. ++.-. ......+++|++|+|+ +| .++...- ....++++|++|+|+++ .++.-.. .....+
T Consensus 52 ~~~~~LdLs~N~-i~~l~-~~~f~~l~~L~~L~Ls--~N-~i~~i~~-~~f~~L~~L~~L~Ls~N-~l~~l~~-~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLG-SYSFFSFPELQVLDLS--RC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLAL-GAFSGL 123 (635)
T ss_dssp TTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECT--TC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECG-GGGTTC
T ss_pred cCCCEEEeeCCC-CCCCC-HHHHhCCCCCCEEECC--CC-cCCCcCh-hHhcCCCCCCEEEccCC-cCCCCCH-HHhcCC
Confidence 478899998865 43211 1113467889999985 34 3432111 11245788888888887 4443111 122457
Q ss_pred CCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCC---HHHHHHHHhcCc
Q 003227 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG---PITISRLLTSSK 278 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~---~~~l~~l~~~~~ 278 (837)
++|++|++++|. ++. ..+..+++|++|++++|. ++..........+++|++|++++|.++ ...+..+.....
T Consensus 124 ~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 124 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 888888888873 333 346788888888888873 322222233456788888888887653 334444333222
Q ss_pred ccccccccccc
Q 003227 279 SLKVLCALNCP 289 (837)
Q Consensus 279 ~L~~l~l~~c~ 289 (837)
....++++.+.
T Consensus 202 ~~~~~~ls~n~ 212 (635)
T 4g8a_A 202 LNLSLDLSLNP 212 (635)
T ss_dssp CCCEEECTTCC
T ss_pred hhhhhhcccCc
Confidence 33345555443
No 220
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.70 E-value=7e-06 Score=95.23 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=54.8
Q ss_pred HhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh--HHhh
Q 003227 147 VARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALG 224 (837)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~l~ 224 (837)
...+++|+.|+|++ + .+.. +..-...+++|++|+|+++ .++ .+..-...+++|++|+|++|. ++. ..+.
T Consensus 220 ~~~l~~L~~L~Ls~--n-~l~~--l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSN--L-QIFN--ISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELG 290 (727)
T ss_dssp --CCCCCCEEECTT--S-CCSC--CCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGG
T ss_pred hccCCCCcEEECCC--C-CCCC--CChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhc
Confidence 34456677777742 2 2221 1111114667777777766 444 122112345677777777763 332 2355
Q ss_pred CCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCC
Q 003227 225 NVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG 266 (837)
Q Consensus 225 ~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~ 266 (837)
.+++|++|+|++| .++. +..-...+++|+.|+|++|.++
T Consensus 291 ~l~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGTTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCCccC
Confidence 6667777777665 2321 1111345666777777776655
No 221
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.65 E-value=7.8e-06 Score=91.71 Aligned_cols=103 Identities=16% Similarity=0.076 Sum_probs=44.7
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccE
Q 003227 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (837)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~ 257 (837)
+++|+.|+|+++ .++ .+..-...+++|++|+|++|...+-..+..+++|++|+|++|. ++..........+++|+.
T Consensus 462 l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 462 LLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCE
T ss_pred cccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCE
Confidence 455555555554 333 1111122345555555555532222344555556666665542 221110111234555666
Q ss_pred EEeccCCCCHH--HHHHHHhcCccccccc
Q 003227 258 LDVSRTDVGPI--TISRLLTSSKSLKVLC 284 (837)
Q Consensus 258 L~l~~~~i~~~--~l~~l~~~~~~L~~l~ 284 (837)
|++++|.++.. .+..+...+++|+.|+
T Consensus 538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 538 LNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 66666544211 1222333355555554
No 222
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=1.5e-05 Score=83.32 Aligned_cols=96 Identities=9% Similarity=0.135 Sum_probs=67.3
Q ss_pred CCHHHHHHHHhhCCCccEEEecCC--CCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCcc-EEEeccC--CCC
Q 003227 192 ICGDAINALAKLCPNLTDIGFLDC--LNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV-GLDVSRT--DVG 266 (837)
Q Consensus 192 i~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~-~L~l~~~--~i~ 266 (837)
+....+..+...|++|++|++++| ..+.+.+|.+|++|++|++..+ ++.-+ ...+.+|++|+ .|++... .+.
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~-~~aF~~~~~L~~~l~l~~~l~~I~ 289 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIG-QRVFSNCGRLAGTLELPASVTAIE 289 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEEEECTTCCEEC
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceeh-HHHhhCChhccEEEEEcccceEEc
Confidence 445556666677999999999985 3345567899999999999875 33222 12246799999 9999873 455
Q ss_pred HHHHHHHHhcCcccccccccccccccchh
Q 003227 267 PITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 267 ~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
+..+. +|++|+.+++.+.. ++..+
T Consensus 290 ~~aF~----~c~~L~~l~l~~n~-i~~I~ 313 (329)
T 3sb4_A 290 FGAFM----GCDNLRYVLATGDK-ITTLG 313 (329)
T ss_dssp TTTTT----TCTTEEEEEECSSC-CCEEC
T ss_pred hhhhh----CCccCCEEEeCCCc-cCccc
Confidence 55544 59999999986554 44443
No 223
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.61 E-value=0.0028 Score=73.83 Aligned_cols=294 Identities=14% Similarity=0.101 Sum_probs=184.0
Q ss_pred HHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC----h
Q 003227 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN----A 459 (837)
Q Consensus 384 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~----~ 459 (837)
+++-+...+.+-+..|+..+..+..++..... ...+.++.|.+.+.+.... +.|+.++..++.. +
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHD---------VPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS---------CCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccc---------cchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC
Confidence 44444443334445666666665544322211 1124566777777664333 8889999888852 2
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc--CccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV--GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 460 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
..-..++ +-++.++....+....++.+|-.+...+.. ++... ...+|.|+..+.. +.....+..|+.++
T Consensus 88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~--~~kw~~k~~~l~~~ 158 (986)
T 2iw3_A 88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVE--TNKWQEKIAILAAF 158 (986)
T ss_dssp TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcc--ccchHHHHHHHHHH
Confidence 2323333 468888888888889999988888877764 22222 2357888888863 45688999999999
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
..|+.....+-...-...||.+...+-+.. ++|...|..++..+|. .-.|..+ ...+|.|+..+.+++. +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~----~~~n~d~---~~~~~~~~~~~~~p~~-~- 228 (986)
T 2iw3_A 159 SAMVDAAKDQVALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATE----TVDNKDI---ERFIPSLIQCIADPTE-V- 228 (986)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGG----GCCCTTT---GGGHHHHHHHHHCTTH-H-
T ss_pred HHHHHHhHHHHHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHh----cCCCcch---hhhHHHHHHHhcChhh-h-
Confidence 999975422222222357888888888776 8999999999999987 3444444 5789999999988743 3
Q ss_pred HHHHHHHHhhcCChhh-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC---ccchhhhhccCChHHHHHH
Q 003227 618 QEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS---EANCIAIGREGGVAPLIAL 693 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~---~~~~~~l~~~~~i~~L~~l 693 (837)
..++..|..-+.-.+. ...+.= .+|.|.+-|.. .+..++..++.++.|+|.- |.....+. ...+|.+-+.
T Consensus 229 ~~~~~~l~~~tfv~~v~~~~l~~--~~p~l~r~l~~---~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~ 302 (986)
T 2iw3_A 229 PETVHLLGATTFVAEVTPATLSI--MVPLLSRGLNE---RETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSN 302 (986)
T ss_dssp HHHHHHHTTCCCCSCCCHHHHHH--HHHHHHHHHTS---SSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHH
T ss_pred HHHHHHhhcCeeEeeecchhHHH--HHHHHHhhhcc---CcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHH
Confidence 3333334332222111 111100 24555555654 7888999999999999953 32221111 2244445444
Q ss_pred hc-cCCHHHHHHHHHHHHHHc
Q 003227 694 AR-SEAEDVHETAAGALWNLA 713 (837)
Q Consensus 694 L~-s~~~~v~~~a~~~L~~l~ 713 (837)
.. -.+|++|+.|..++..|-
T Consensus 303 ~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 303 FATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp TTTCCSHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHH
Confidence 43 367999999988888874
No 224
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.57 E-value=2.3e-05 Score=77.79 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHccCChHhHH-HHHhhcHHHHHHhcCCCccccc
Q 003227 38 VDWTSLPDDTVIQLMSCLNYRDRA-SLSSTCRTWRALGASPCLWSSL 83 (837)
Q Consensus 38 ~~~~~LP~eil~~I~~~l~~~d~~-~~~~v~~~w~~~~~~~~~~~~l 83 (837)
..+..||+|++..||++|+.++++ +++.|||+|+.+..++.+|+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 468899999999999999999999 9999999999999999988654
No 225
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.52 E-value=1.9e-05 Score=91.51 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=78.5
Q ss_pred HhcCCCCCEEEecCCCCCCHHHHH-HHHhhCCCccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhc
Q 003227 175 ALCCPKLKKLRLSGIRDICGDAIN-ALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHK 251 (837)
Q Consensus 175 ~~~~~~L~~L~l~~~~~i~~~~~~-~l~~~~~~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~ 251 (837)
...+++|+.|+|+++ .++. +. .+. .+++|++|+|++| .++. ..+..+++|++|+|++|. ++ .+..-...
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~--l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~ 291 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFN--ISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGS 291 (727)
T ss_dssp --CCCCCCEEECTTS-CCSC--CCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGG
T ss_pred hccCCCCcEEECCCC-CCCC--CChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CC--ccChhhcC
Confidence 346899999999998 4441 11 122 5799999999999 4443 457899999999999984 44 22222467
Q ss_pred CCCccEEEeccCCCCHHHHHHHHhcCcccccccccccccccchh
Q 003227 252 LPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (837)
Q Consensus 252 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~i~~~~ 295 (837)
+++|++|+|++|.++. +-.-+..+++|+.|+|++|. ++...
T Consensus 292 l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~ 332 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNP-LEKQF 332 (727)
T ss_dssp GTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSC-CCSHH
T ss_pred CCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCc-cCCCC
Confidence 8999999999997751 21113468999999999998 65433
No 226
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.51 E-value=1.8e-05 Score=75.11 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=40.9
Q ss_pred hCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcc
Q 003227 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (837)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~ 279 (837)
.+++|++|++++|. ++. ..+..+++|++|++++|. ++... ......+++|+.|+|++|.++.-.- .....+++
T Consensus 52 ~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~-~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 127 (193)
T 2wfh_A 52 NYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIP-PRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSA 127 (193)
T ss_dssp GCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCC-TTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTT
T ss_pred cccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeC-HHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCcc
Confidence 34556666665552 222 235555666666665552 22111 0112345566666666654431100 11123566
Q ss_pred cccccccccccccchh
Q 003227 280 LKVLCALNCPVLEEEN 295 (837)
Q Consensus 280 L~~l~l~~c~~i~~~~ 295 (837)
|+.|++++++-.-|..
T Consensus 128 L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 128 LSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCEEECCSSCEECSGG
T ss_pred ccEEEeCCCCeecCCc
Confidence 6666666665333333
No 227
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.40 E-value=1.4e-05 Score=76.05 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=37.2
Q ss_pred CCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccc
Q 003227 204 CPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L 280 (837)
+++|++|++++|. ++. ..+..+++|++|++++|. ++.... .....+++|++|++++|.++...- .....+++|
T Consensus 53 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L 128 (192)
T 1w8a_A 53 LPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISN-KMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSL 128 (192)
T ss_dssp CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECS-SSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTC
T ss_pred CCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCH-HHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCC
Confidence 4555555555552 222 234555555555555542 221110 112335556666666655432100 011135566
Q ss_pred ccccccccc
Q 003227 281 KVLCALNCP 289 (837)
Q Consensus 281 ~~l~l~~c~ 289 (837)
+.|++++++
T Consensus 129 ~~L~L~~N~ 137 (192)
T 1w8a_A 129 TSLNLASNP 137 (192)
T ss_dssp CEEECTTCC
T ss_pred CEEEeCCCC
Confidence 666666665
No 228
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.34 E-value=0.0093 Score=59.51 Aligned_cols=154 Identities=17% Similarity=0.141 Sum_probs=118.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHH
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (837)
..+++-|.+++.+.+..+..-|..+...+ ......++..+|+..|+......+.+.+..++.+|.++-...+.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D-------~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G 193 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQED-------KDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG 193 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTC-------TTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcc-------hHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc
Confidence 56667777777777888888888744332 34477899999999999999999999999999999999988777
Q ss_pred HHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-cchHHHHhh-------CC---HHHHHHHHHhhCCCCHHH
Q 003227 462 AKAVAEE-GGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADA-------GG---VKALVDLIFKWSSGGDGV 529 (837)
Q Consensus 462 ~~~i~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~-------g~---i~~L~~lL~~~~~~~~~~ 529 (837)
-..++.. ..|..+..++.+.+..+...|+.+|..+...+ .+...+.+. .+ .+.|+.+|....+.+.++
T Consensus 194 m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 194 MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 7666643 34888888888889999999999999998654 344333322 12 678899996444688999
Q ss_pred HHHHHHHHHHhhc
Q 003227 530 LERAAGALANLAA 542 (837)
Q Consensus 530 ~~~a~~~L~~l~~ 542 (837)
+.+|+..+-.+..
T Consensus 274 q~~amtLIN~lL~ 286 (339)
T 3dad_A 274 LVYTVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999877766655
No 229
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.28 E-value=0.031 Score=67.33 Aligned_cols=351 Identities=8% Similarity=-0.025 Sum_probs=191.6
Q ss_pred HHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC---
Q 003227 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--- 458 (837)
Q Consensus 382 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--- 458 (837)
..+++.+.+.+..++..++.++..++..+... .+ .+.++.|++.+.++++..+..++.+|..+...
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~------~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPD------RW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT------TC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc------ch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46677775666889999999999877543221 11 34578899999888888999999999998762
Q ss_pred ----hHHHHHHHH--cCCHHHHHHH-------HhcCCH---------HHHHHHHHHHHhhccCccchHHHHh--hCCHHH
Q 003227 459 ----AKVAKAVAE--EGGINILAVL-------ARSMNR---------LVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKA 514 (837)
Q Consensus 459 ----~~~~~~i~~--~g~i~~L~~l-------L~~~~~---------~~~~~a~~~L~~l~~~~~~~~~l~~--~g~i~~ 514 (837)
++.+..+.. ....+.++++ ++.... .+...++.+++.+...+- ...+.+ ...++.
T Consensus 157 ~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~-~~~~~~~~~~~~~~ 235 (960)
T 1wa5_C 157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDI-PEFFEDNIQVGMGI 235 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCC-CHHHHHTHHHHHHH
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHH
Confidence 122322211 1113434443 333211 233446677777654321 111111 112344
Q ss_pred HHHHHHhhC---CCC---------HHHHHHHHHHHHHhhcCC-C-chHHHHhcCcHHHHHHHHhc----CCCHHHHHHHH
Q 003227 515 LVDLIFKWS---SGG---------DGVLERAAGALANLAADD-K-CSMEVALAGGVHALVMLARS----CKFEGVQEQAA 576 (837)
Q Consensus 515 L~~lL~~~~---~~~---------~~~~~~a~~~L~~l~~~~-~-~~~~l~~~g~i~~L~~ll~~----~~~~~~~~~a~ 576 (837)
+..++.... ..+ ..++..++.+|..+.... + ....+ ...++.....+.. ..++.+...++
T Consensus 236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al 313 (960)
T 1wa5_C 236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSL 313 (960)
T ss_dssp HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHH
T ss_pred HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHH
Confidence 455553200 011 246778888888777522 1 11111 1334555555542 33477888899
Q ss_pred HHHHHHhcCCCCCCcccchhhccchHHHHH-----HHcCC---------CC--------------HHHHHHHHHHHHhhc
Q 003227 577 RALANLAAHGDSNSNNSAVGQEAGALEALV-----QLTRS---------PH--------------EGVRQEAAGALWNLS 628 (837)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~-----~lL~~---------~~--------------~~~~~~a~~~L~~Ls 628 (837)
..+..++.. +..+..+.....++.++ ..+.- .+ ...|..|...|..++
T Consensus 314 ~fl~~~~~~----~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~ 389 (960)
T 1wa5_C 314 SFLTAVTRI----PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELK 389 (960)
T ss_dssp HHHHHHHTS----HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred HHHHHHhCc----HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHH
Confidence 988888753 22222222223444444 22211 11 135666777777776
Q ss_pred CChhhHHHHHHcCCHHHHHHHHhh---cCCCCHHHHHHHHHHHHhcccCccchh-hhh---cc-CChH----HHHHHhcc
Q 003227 629 FDDRNREAIAAAGGVEALVVLAQS---CSNASPGLQERAAGALWGLSVSEANCI-AIG---RE-GGVA----PLIALARS 696 (837)
Q Consensus 629 ~~~~~~~~l~~~g~i~~L~~ll~~---~~~~~~~v~~~A~~~L~~l~~~~~~~~-~l~---~~-~~i~----~L~~lL~s 696 (837)
..-+ ..+... .++.+.+.+.. ..+.++..++.|+.+++.++....... ... .. ...+ .++..+.+
T Consensus 390 ~~~~--~~v~~~-~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~ 466 (960)
T 1wa5_C 390 EKNE--VLVTNI-FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466 (960)
T ss_dssp HHCH--HHHHHH-HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC
T ss_pred HHcc--hhHHHH-HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC
Confidence 5422 111111 22333333431 013678899999999999875311111 000 00 1112 23344566
Q ss_pred C---CHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 697 E---AEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 697 ~---~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
+ ++.+|..|++++..++..-. .... ...++.++..+.++ ++.|+..|+.||.++...
T Consensus 467 ~~~~~p~vr~~a~~~lg~~~~~~~--~~~l-~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 467 NNIPHIILRVDAIKYIYTFRNQLT--KAQL-IELMPILATFLQTD-EYVVYTYAAITIEKILTI 526 (960)
T ss_dssp SSCSCHHHHHHHHHHHHHTGGGSC--HHHH-HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTC
T ss_pred CCCCCceehHHHHHHHHHHHhhCC--HHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhc
Confidence 6 89999999999999987421 1222 23567888888765 488999999999998763
No 230
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.26 E-value=1.4e-05 Score=75.93 Aligned_cols=59 Identities=8% Similarity=0.219 Sum_probs=28.6
Q ss_pred CCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCC
Q 003227 204 CPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDV 265 (837)
Q Consensus 204 ~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i 265 (837)
+++|++|++++| .++. ..+..+++|++|++++|. ++... ......+++|++|++++|.+
T Consensus 77 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 77 ASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVM-PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSC-CCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CCeeC-HHHhhcCCCCCEEEeCCCCc
Confidence 455666666655 2332 224555666666666552 22110 01123455666666666543
No 231
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.24 E-value=5.4e-05 Score=70.78 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=6.6
Q ss_pred Ccccccccccccc
Q 003227 277 SKSLKVLCALNCP 289 (837)
Q Consensus 277 ~~~L~~l~l~~c~ 289 (837)
+++|+.|++++++
T Consensus 123 l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 123 LTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSC
T ss_pred CcccCEEEecCCC
Confidence 4455555555544
No 232
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.11 E-value=7.7e-05 Score=70.77 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=44.8
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~ 253 (837)
.+++|+.|+|+++ .++...-.. ...+++|++|++++|. ++. ..+..+++|++|++++|. ++... ......++
T Consensus 52 ~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~ 126 (193)
T 2wfh_A 52 NYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVP-EGAFNDLS 126 (193)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCC-TTTTTTCT
T ss_pred cccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeC-hhhhhcCc
Confidence 4566666666655 333211111 1235677777777763 332 346667777777777763 32111 11234567
Q ss_pred CccEEEeccCCC
Q 003227 254 KLVGLDVSRTDV 265 (837)
Q Consensus 254 ~L~~L~l~~~~i 265 (837)
+|+.|++++|.+
T Consensus 127 ~L~~L~L~~N~~ 138 (193)
T 2wfh_A 127 ALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSCE
T ss_pred cccEEEeCCCCe
Confidence 777777777543
No 233
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.08 E-value=0.00014 Score=67.85 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=49.2
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~ 253 (837)
.+++|++|+++++ .++... ......+++|++|++++|. ++. ..+..+++|++|++++| .++... ..+...++
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~ 124 (177)
T 2o6r_A 50 KLTQLTKLSLSQN-QIQSLP-DGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVP-DGIFDRLT 124 (177)
T ss_dssp TCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCT
T ss_pred CcccccEEECCCC-cceEeC-hhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeC-HHHhcCCc
Confidence 4566777776665 333211 1112345778888887773 332 23567788888888776 333111 12235577
Q ss_pred CccEEEeccCCCC
Q 003227 254 KLVGLDVSRTDVG 266 (837)
Q Consensus 254 ~L~~L~l~~~~i~ 266 (837)
+|++|++++|.+.
T Consensus 125 ~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 125 SLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSSCBC
T ss_pred ccCEEEecCCCee
Confidence 8888888887653
No 234
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.07 E-value=0.00011 Score=80.92 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=46.0
Q ss_pred CCCCCCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcC-CCcccccCCCC
Q 003227 36 EVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGAS-PCLWSSLDLRA 87 (837)
Q Consensus 36 ~~~~~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~-~~~~~~l~l~~ 87 (837)
..+.+..||+|++.+||+||+.++++++++|||+|+.+..+ +.+|+.+.++.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 34567899999999999999999999999999999999887 78998776544
No 235
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.02 E-value=0.00031 Score=76.71 Aligned_cols=49 Identities=27% Similarity=0.457 Sum_probs=44.4
Q ss_pred CCCCCCCCCHHHHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccccC
Q 003227 36 EVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84 (837)
Q Consensus 36 ~~~~~~~LP~eil~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~ 84 (837)
..+.+..||+|++.+||+||+.+|++++++|||+|+.+..++.+|+.+.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 3567899999999999999999999999999999999998888887654
No 236
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.92 E-value=0.0011 Score=65.53 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=41.5
Q ss_pred HhhCCCccEEEecCCCCCCh-H----HhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCH------HH
Q 003227 201 AKLCPNLTDIGFLDCLNVDE-V----ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGP------IT 269 (837)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~-~----~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~------~~ 269 (837)
...+|+|++|+|++|. ++. . .+..+++|+.|+|++|.--+...+..+ ..+ +|++|+|++|.++. .-
T Consensus 166 ~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 166 EENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred HhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhH
Confidence 3455666666666663 332 2 234566666666666532222222221 122 66777777666542 22
Q ss_pred HHHHHhcCcccccccc
Q 003227 270 ISRLLTSSKSLKVLCA 285 (837)
Q Consensus 270 l~~l~~~~~~L~~l~l 285 (837)
...+...+|+|+.||-
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 2334445667766653
No 237
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.90 E-value=0.00016 Score=78.77 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=44.2
Q ss_pred CCCCCCCCCHH----HHHHHHccCChHhHHHHHhhcHHHHHHhcCCCcccccC
Q 003227 36 EVVDWTSLPDD----TVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84 (837)
Q Consensus 36 ~~~~~~~LP~e----il~~I~~~l~~~d~~~~~~v~~~w~~~~~~~~~~~~l~ 84 (837)
..|.+..||+| ++.+||+||+.++++++++|||+|+.+..++.+|+.+.
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~ 59 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI 59 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 34667889999 99999999999999999999999999998999998653
No 238
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.83 E-value=0.00031 Score=73.15 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=82.5
Q ss_pred CCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCC--CCCHHHHHHHHhhCCCccEEEecCC-CCCChHHhhCC
Q 003227 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIR--DICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGNV 226 (837)
Q Consensus 150 ~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~l~~l 226 (837)
..++..+.+.+ .+.......+...|++|++|+|+++. .|.+.+ ...|++|++|++.++ ..+.+.+|.+|
T Consensus 201 ~~~~~~l~~~~----~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~ni~~I~~~aF~~~ 272 (329)
T 3sb4_A 201 PRDINFLTIEG----KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHNLKTIGQRVFSNC 272 (329)
T ss_dssp GGGCSEEEEEE----CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT----TTTCTTCCEEECCTTCCEECTTTTTTC
T ss_pred ccccceEEEee----eecHHHHHHHHHhcCCCeEEECCCCCcceecHhh----hhCCCCCCEEECCcccceehHHHhhCC
Confidence 34566677742 46666777777779999999999852 233332 346899999999875 23456788999
Q ss_pred CCCC-EeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCC---CHHHHHHHHhcCccccccc
Q 003227 227 LSVR-FLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDV---GPITISRLLTSSKSLKVLC 284 (837)
Q Consensus 227 ~~L~-~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i---~~~~l~~l~~~~~~L~~l~ 284 (837)
++|+ .|++.. .++.-+ ...+.+|++|+.|+++++.+ .+..+. +|++|+.+.
T Consensus 273 ~~L~~~l~l~~--~l~~I~-~~aF~~c~~L~~l~l~~n~i~~I~~~aF~----~~~~L~~ly 327 (329)
T 3sb4_A 273 GRLAGTLELPA--SVTAIE-FGAFMGCDNLRYVLATGDKITTLGDELFG----NGVPSKLIY 327 (329)
T ss_dssp TTCCEEEEECT--TCCEEC-TTTTTTCTTEEEEEECSSCCCEECTTTTC----TTCCCCEEE
T ss_pred hhccEEEEEcc--cceEEc-hhhhhCCccCCEEEeCCCccCccchhhhc----CCcchhhhc
Confidence 9999 999976 333222 12346799999999987644 444333 578888764
No 239
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.79 E-value=0.0019 Score=63.75 Aligned_cols=87 Identities=24% Similarity=0.297 Sum_probs=56.2
Q ss_pred HHHhcCCCCCEEEecCCCCCCH-HHHHHHHhhCCCccEEEecCCCCCChHHhhCCC--CCCEeeccCCCCCC----H-HH
Q 003227 173 AIALCCPKLKKLRLSGIRDICG-DAINALAKLCPNLTDIGFLDCLNVDEVALGNVL--SVRFLSVAGTSNMK----W-GV 244 (837)
Q Consensus 173 ~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~--~L~~L~ls~~~~i~----~-~~ 244 (837)
.+...+|+|++|+|+++ .+++ .++..+...+|+|+.|+|++|..-+...+..+. +|++|+|++|+--. . ..
T Consensus 164 i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 164 IIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred HHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 34456888888888887 4543 223344456789999999888433334454444 89999998875321 1 22
Q ss_pred HHHHHhcCCCccEEEe
Q 003227 245 VSQVWHKLPKLVGLDV 260 (837)
Q Consensus 245 l~~~~~~~~~L~~L~l 260 (837)
...+...+|+|+.||=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 2355677899998873
No 240
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.78 E-value=8.6e-06 Score=85.89 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=27.3
Q ss_pred CccEEEecCCCCCCh--HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCC
Q 003227 206 NLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG 266 (837)
Q Consensus 206 ~L~~L~l~~~~~~~~--~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~ 266 (837)
.++.|++++| .++. .......+|++|+++++..++.-. ...+..+++|+.||+++|.++
T Consensus 155 ~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 155 ESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSCCC
T ss_pred hhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCCcC
Confidence 4555555555 2332 111233456666665543332211 112244566666666666543
No 241
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.70 E-value=0.00021 Score=76.21 Aligned_cols=165 Identities=13% Similarity=0.183 Sum_probs=92.2
Q ss_pred hCCCcceeeecCcccc---hHHHHHcCCCccEEecCCCCC-CCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHh
Q 003227 101 RCMNLQKLRFRGAESA---DSIIHLQARNLRELSGDYCRK-ITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~~---~~~~~~~~~~L~~L~l~~c~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 176 (837)
.|++|+.+++.++... ...+ .+.+|+++.+..... +.+.. ..+|++|+.+++.. ....+....+ .
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF--~~~~L~~l~lp~~l~~I~~~a----F~~~~~L~~l~l~~-~l~~I~~~aF----~ 246 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTF--VYAGIEEVLLPVTLKEIGSQA----FLKTSQLKTIEIPE-NVSTIGQEAF----R 246 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTT--TTCCCSEEECCTTCCEECTTT----TTTCTTCCCEECCT-TCCEECTTTT----T
T ss_pred CcccCCeeecCCCcceEechhhE--eecccCEEEeCCchheehhhH----hhCCCCCCEEecCC-CccCcccccc----c
Confidence 4666777777654221 1112 256777777764321 22222 24577788877752 2222332222 1
Q ss_pred cCCCCCEEEecCC-CCCCHHHHHHHHhhCCCccEEEecCCCC-------CChHHhhCCCCCCEeeccCCCCCCHHHHHHH
Q 003227 177 CCPKLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLDCLN-------VDEVALGNVLSVRFLSVAGTSNMKWGVVSQV 248 (837)
Q Consensus 177 ~~~~L~~L~l~~~-~~i~~~~~~~l~~~~~~L~~L~l~~~~~-------~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~ 248 (837)
+ .+|+++.+... ..+.+.++ ..|++|+++.+.++.. +.+.++.+|++|+.+++... ++.-+ ...
T Consensus 247 ~-~~L~~i~lp~~i~~I~~~aF----~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~-~~a 318 (401)
T 4fdw_A 247 E-SGITTVKLPNGVTNIASRAF----YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILG-QGL 318 (401)
T ss_dssp T-CCCSEEEEETTCCEECTTTT----TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEEC-TTT
T ss_pred c-CCccEEEeCCCccEEChhHh----hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEh-hhh
Confidence 1 46777777542 12333222 3678888888876532 44567788888888888642 32221 122
Q ss_pred HhcCCCccEEEeccC--CCCHHHHHHHHhcCcccccccccccc
Q 003227 249 WHKLPKLVGLDVSRT--DVGPITISRLLTSSKSLKVLCALNCP 289 (837)
Q Consensus 249 ~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~l~l~~c~ 289 (837)
+.+|++|+.+++..+ .++...+. +| +|+.+.+.++.
T Consensus 319 F~~c~~L~~l~lp~~l~~I~~~aF~----~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 319 LGGNRKVTQLTIPANVTQINFSAFN----NT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCCSCCEEEECTTCCEECTTSSS----SS-CCCEEEECCSS
T ss_pred hcCCCCccEEEECccccEEcHHhCC----CC-CCCEEEEcCCC
Confidence 356888888888653 34444333 47 78888887664
No 242
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.41 E-value=0.00073 Score=65.74 Aligned_cols=67 Identities=24% Similarity=0.232 Sum_probs=42.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhcc
Q 003227 605 LVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGRE 684 (837)
Q Consensus 605 L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~ 684 (837)
+..+++++++.|+..++..+ ..+.|..++.+ +++.||..++..+.
T Consensus 175 l~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D---~d~~VR~~aa~~l~--------------- 219 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHD---PDWTVRLAAVEHAS--------------- 219 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGC---SSHHHHHHHHHHSC---------------
T ss_pred HHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcC---CCHHHHHHHHHcCC---------------
Confidence 33455666677776666542 23456666665 77788877777642
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHH
Q 003227 685 GGVAPLIALARSEAEDVHETAAGAL 709 (837)
Q Consensus 685 ~~i~~L~~lL~s~~~~v~~~a~~~L 709 (837)
.+.|..+ ++++..|+..+...|
T Consensus 220 --~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 --LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --HHHHHHc-cCCCHHHHHHHHHHh
Confidence 3445555 888888888887654
No 243
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.19 E-value=0.0013 Score=60.92 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCcccc
Q 003227 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (837)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 281 (837)
++|++|++++|. ++. ..+..+++|++|+|++| .++... ...+..+++|+.|+|++|.++.-. ......+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCCccceeC-HHHhccccCCC
Confidence 445555555552 221 23445555555555554 222110 011234555566666555443100 01112355566
Q ss_pred cccccccc
Q 003227 282 VLCALNCP 289 (837)
Q Consensus 282 ~l~l~~c~ 289 (837)
.|++++++
T Consensus 109 ~L~L~~N~ 116 (174)
T 2r9u_A 109 HIYLYNNP 116 (174)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 66666555
No 244
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.13 E-value=0.0016 Score=63.42 Aligned_cols=180 Identities=20% Similarity=0.154 Sum_probs=105.9
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003227 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (837)
Q Consensus 458 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (837)
++..|......-....+..+++++++.|+..++..| . .+.|..++ .+.+..++..++..+
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll---~D~d~~VR~~aA~~l 122 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALM---FDEDREVRITVADRL 122 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTT---TCSCHHHHHHHHHHS
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHH---cCCCHHHHHHHHHhC
Confidence 345565555544455566666777777777776532 1 12344455 456777777776632
Q ss_pred HHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 538 ~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
. .+.+..++.++ +..|+..++.. +. .+.+..+++++++.|+
T Consensus 123 ---~--------------~~~L~~L~~D~-d~~VR~~aA~~---l~------------------~~~l~~l~~D~d~~VR 163 (244)
T 1lrv_A 123 ---P--------------LEQLEQMAADR-DYLVRAYVVQR---IP------------------PGRLFRFMRDEDRQVR 163 (244)
T ss_dssp ---C--------------TGGGGGGTTCS-SHHHHHHHHHH---SC------------------GGGGGGTTTCSCHHHH
T ss_pred ---C--------------HHHHHHHHcCC-CHHHHHHHHHh---cC------------------HHHHHHHHcCCCHHHH
Confidence 1 11233444544 37777777652 11 0234456677788888
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccC
Q 003227 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSE 697 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~ 697 (837)
..++.. +. .+.+..++.+ +++.||..++..+ ..+.|..++.++
T Consensus 164 ~~aa~~---l~--------------~~ll~~ll~D---~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~ 206 (244)
T 1lrv_A 164 KLVAKR---LP--------------EESLGLMTQD---PEPEVRRIVASRL-----------------RGDDLLELLHDP 206 (244)
T ss_dssp HHHHHH---SC--------------GGGGGGSTTC---SSHHHHHHHHHHC-----------------CGGGGGGGGGCS
T ss_pred HHHHHc---CC--------------HHHHHHHHcC---CCHHHHHHHHHhC-----------------CHHHHHHHHcCC
Confidence 877764 11 1334445555 8888888887653 234566778888
Q ss_pred CHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHH
Q 003227 698 AEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 752 (837)
Q Consensus 698 ~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~ 752 (837)
+..|+..++..+. .+.|..+ .++ ...|+..|+..|+
T Consensus 207 d~~VR~~aa~~l~-----------------~~~L~~L-~D~-~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 207 DWTVRLAAVEHAS-----------------LEALREL-DEP-DPEVRLAIAGRLG 242 (244)
T ss_dssp SHHHHHHHHHHSC-----------------HHHHHHC-CCC-CHHHHHHHHCCC-
T ss_pred CHHHHHHHHHcCC-----------------HHHHHHc-cCC-CHHHHHHHHHHhC
Confidence 8888888887742 2344444 544 4788888876654
No 245
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.12 E-value=0.0018 Score=59.72 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=6.2
Q ss_pred hCCCCCCEeeccCC
Q 003227 224 GNVLSVRFLSVAGT 237 (837)
Q Consensus 224 ~~l~~L~~L~ls~~ 237 (837)
..+++|++|+|++|
T Consensus 75 ~~l~~L~~L~L~~N 88 (170)
T 3g39_A 75 DKLTQLTQLSLNDN 88 (170)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC
Confidence 34444444444443
No 246
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.06 E-value=0.002 Score=59.66 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=47.8
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCc
Q 003227 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (837)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L 255 (837)
++|+.|+|+++ .++... ......+++|++|+|++| .++. ..+..+++|++|+|++|. ++... ......+++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~-~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIP-RGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeC-HHHhccccCC
Confidence 56777777766 333211 111234577778887777 3333 235677888888887763 32111 1223457788
Q ss_pred cEEEeccCCCC
Q 003227 256 VGLDVSRTDVG 266 (837)
Q Consensus 256 ~~L~l~~~~i~ 266 (837)
+.|++++|.+.
T Consensus 108 ~~L~L~~N~~~ 118 (174)
T 2r9u_A 108 THIYLYNNPWD 118 (174)
T ss_dssp SEEECCSSCBC
T ss_pred CEEEeCCCCcc
Confidence 88888887553
No 247
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.04 E-value=0.0015 Score=60.27 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=67.2
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCcc
Q 003227 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (837)
Q Consensus 180 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~ 256 (837)
..+.|++++. .++. +. ....++|++|++++|. ++. ..+..+++|++|++++|. ++... ...+..+++|+
T Consensus 10 ~~~~l~~s~n-~l~~--ip--~~~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGK-SLAS--VP--TGIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLP-AGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTS-CCSS--CC--SCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred CCCEEEeCCC-CcCc--cC--ccCCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccC-hhhccCCCCCC
Confidence 3567777765 3322 11 0123689999999884 433 457889999999999873 43211 12346789999
Q ss_pred EEEeccCCCCHHHHHHHHhcCccccccccccccc
Q 003227 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (837)
Q Consensus 257 ~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~~c~~ 290 (837)
+|+|++|.++.-.- .....+++|+.|++++++-
T Consensus 82 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 82 QLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCC
Confidence 99999987652111 1233589999999999883
No 248
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.01 E-value=0.6 Score=55.99 Aligned_cols=302 Identities=10% Similarity=0.039 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHhcc-ChH-HHHHHHHcCCHHHHHHHHh-----cCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHH
Q 003227 443 GLQSEAAKAIANLSV-NAK-VAKAVAEEGGINILAVLAR-----SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKAL 515 (837)
Q Consensus 443 ~~~~~a~~~L~~l~~-~~~-~~~~i~~~g~i~~L~~lL~-----~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L 515 (837)
.++..++.+|..+.. .++ ....+. ..++..++.+. ..++.+...++..+..++..+..+..+.....++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMIN--EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHH
Confidence 356777888877765 332 222111 12455556664 346778888888888877654322222111223333
Q ss_pred H-----HHHHh-------h-------------CCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhc-----
Q 003227 516 V-----DLIFK-------W-------------SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS----- 565 (837)
Q Consensus 516 ~-----~lL~~-------~-------------~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~----- 565 (837)
+ ..+.- + .+.....+..|..+|..++..-. ..+.. ..++.+...+..
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~~~~~ 415 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQYMSDP 415 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHHHC--
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHhccCc
Confidence 3 22210 0 01112356667777777765322 11111 122333333431
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCC-cccchhhccchHHH----HHHHcCCC---CHHHHHHHHHHHHhhcCChhhHHHH
Q 003227 566 CKFEGVQEQAARALANLAAHGDSNS-NNSAVGQEAGALEA----LVQLTRSP---HEGVRQEAAGALWNLSFDDRNREAI 637 (837)
Q Consensus 566 ~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~i~~----L~~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~l 637 (837)
..+...++.|+.++..++....... .....-......+. ++..+.++ ++-+|..|++++..++..- ..+.+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l 494 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL 494 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH
Confidence 2335678899999999986421111 00000000123333 34445666 8899999999999988752 11221
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCc--------c-chhhhhc--cCChHHHHHHhccCC---HH--H
Q 003227 638 AAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE--------A-NCIAIGR--EGGVAPLIALARSEA---ED--V 701 (837)
Q Consensus 638 ~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~--------~-~~~~l~~--~~~i~~L~~lL~s~~---~~--v 701 (837)
...++.++..+.+ .+..|+..|+.+|.+++... + .+..+.. ...++.|+.++.... +. .
T Consensus 495 --~~~l~~l~~~L~d---~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 495 --IELMPILATFLQT---DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp --HHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred --HHHHHHHHHHhCC---CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 1246677777765 78999999999999988631 1 1222322 234455556665531 11 2
Q ss_pred HHHHHHHHHHHcC--CcccHHHHHHcCCHHHHHHHH----hcCCcHHHHHHHHHHHHHhhCC
Q 003227 702 HETAAGALWNLAF--NPGNALRIVEEGGVPALVHLC----SSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 702 ~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~~ll----~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
.+.+..+|..++. ...... ... ..++.|+..+ .+++++..+..+..+++.+...
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 3455555555432 111111 011 1233444433 3344566777788888887765
No 249
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.97 E-value=1.1 Score=42.63 Aligned_cols=218 Identities=15% Similarity=0.060 Sum_probs=143.0
Q ss_pred ChhHHHHHHHHHHHhcc-ChHHHHHHHHcCC-HHHHHHHHhc-------C-----CHHHHHHHHHHHHhhccCccchHHH
Q 003227 441 REGLQSEAAKAIANLSV-NAKVAKAVAEEGG-INILAVLARS-------M-----NRLVAEEAAGGLWNLSVGEEHKGAI 506 (837)
Q Consensus 441 ~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~-i~~L~~lL~~-------~-----~~~~~~~a~~~L~~l~~~~~~~~~l 506 (837)
+++.|+.|+.-|..=-. .++....+=..-| +..|++=+-+ + ...-...|...|.-++.+++.|..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 55668877777766444 3455555555544 5555543211 1 1223356666777788999999999
Q ss_pred HhhCCHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003227 507 ADAGGVKALVDLIFKWSSGG---DGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (837)
Q Consensus 507 ~~~g~i~~L~~lL~~~~~~~---~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (837)
.++...-.|..+|.. .+.+ +-++-..+++++.+.. +++....+.+.+.+|..++.++.++ +-.+..|.-++..
T Consensus 94 l~a~iplyLyPfL~t-~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gs-elSKtvAtfIlqK 171 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHT-VSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGS-ELSKTVATFILQK 171 (268)
T ss_dssp HHTTGGGGTHHHHHC-CCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhcc-ccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhcc-HHHHHHHHHHHHH
Confidence 999877777788865 3333 4678899999999997 3455677788899999999999997 7777888888877
Q ss_pred HhcCCCCCCcccchhhc--------cchHHHHH-HHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHc-------CCHHH
Q 003227 582 LAAHGDSNSNNSAVGQE--------AGALEALV-QLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA-------GGVEA 645 (837)
Q Consensus 582 l~~~~~~~~~~~~~~~~--------~~~i~~L~-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~-------g~i~~ 645 (837)
+-.+ +.....+.. ..++..++ .+.+.+++.+.++.+.+-..|+.++..++.+... |.+.
T Consensus 172 IL~d----d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~- 246 (268)
T 2fv2_A 172 ILLD----DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFA- 246 (268)
T ss_dssp HHHS----HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTH-
T ss_pred Hhcc----chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHH-
Confidence 7653 111111110 11222233 3345678889999999999999998888777542 2222
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhc
Q 003227 646 LVVLAQSCSNASPGLQERAAGALWGL 671 (837)
Q Consensus 646 L~~ll~~~~~~~~~v~~~A~~~L~~l 671 (837)
.+++ +|+.++.+-...+.|+
T Consensus 247 --~~l~----~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 247 --QVLK----DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp --HHHT----SCHHHHHHHHHHHHHS
T ss_pred --HHHh----cCHHHHHHHHHHHHhc
Confidence 2222 6677777776666665
No 250
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.68 E-value=0.14 Score=48.59 Aligned_cols=176 Identities=14% Similarity=0.053 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 003227 530 LERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK----FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (837)
Q Consensus 530 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L 605 (837)
..+|+..|..++.+++.+..+.++...--|..++...+ .+-++..+.++++.+...+ .++.-..+.+.+++|.+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~d--d~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTD--EQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGC--CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccC--cHHHHHHHHhhhHHHHH
Confidence 45778888899999999999999999888888887543 2567778999999998754 34555666788999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHc--------CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccc
Q 003227 606 VQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA--------GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN 677 (837)
Q Consensus 606 ~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~--------g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~ 677 (837)
++.+..+++-.+.-|..++..+-.++.+-.++... ..+..++.-+.. .+++.+-....++-..++.++..
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~--~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSK--EPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999998888876666554444321 123334443332 48889999999999999999888
Q ss_pred hhhhhcc-------CChHHHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 678 CIAIGRE-------GGVAPLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 678 ~~~l~~~-------~~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
+.++... |.+. ..+ .+|+.++..-...+.|+.
T Consensus 229 r~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~~ 267 (268)
T 2fv2_A 229 REALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNLQ 267 (268)
T ss_dssp HHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhcC
Confidence 8776652 2222 233 357888888777777763
No 251
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.45 E-value=0.00012 Score=77.08 Aligned_cols=178 Identities=10% Similarity=-0.007 Sum_probs=104.8
Q ss_pred CCcceeeecCcccchHHH--HHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCC
Q 003227 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (837)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~ 180 (837)
+++++|+|+++....-.. -..+++|++|+|++|...+.-. .....++++|.++.+. .++++....- .....+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~--~~N~l~~l~~-~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIE--KANNLLYINP-EAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEE--EETTCCEECT-TSBCCCTT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcc--cCCcccccCc-hhhhhccc
Confidence 579999999986653211 1257899999999986322100 0112456777765442 2445543111 12346899
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCC-CCCCEeeccCCCCCCHHHHHHHHhcCCCcc
Q 003227 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (837)
Q Consensus 181 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l-~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~ 256 (837)
|++|+++++ .++...-... ....++..|++.++..++. ..+..+ ..++.|++++| .++.-. .-.....+|+
T Consensus 106 L~~L~l~~n-~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~--~~~f~~~~L~ 180 (350)
T 4ay9_X 106 LQYLLISNT-GIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH--NSAFNGTQLD 180 (350)
T ss_dssp CCEEEEEEE-CCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEEC--TTSSTTEEEE
T ss_pred ccccccccc-ccccCCchhh-cccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCC--hhhccccchh
Confidence 999999987 3432100001 1235678888877655544 344555 46899999987 343211 1112346799
Q ss_pred EEEecc-CCC---CHHHHHHHHhcCcccccccccccccccch
Q 003227 257 GLDVSR-TDV---GPITISRLLTSSKSLKVLCALNCPVLEEE 294 (837)
Q Consensus 257 ~L~l~~-~~i---~~~~l~~l~~~~~~L~~l~l~~c~~i~~~ 294 (837)
.|++++ +.+ ....+ ..+++|+.|+++++. ++..
T Consensus 181 ~l~l~~~n~l~~i~~~~f----~~l~~L~~LdLs~N~-l~~l 217 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVF----HGASGPVILDISRTR-IHSL 217 (350)
T ss_dssp EEECTTCTTCCCCCTTTT----TTEECCSEEECTTSC-CCCC
T ss_pred HHhhccCCcccCCCHHHh----ccCcccchhhcCCCC-cCcc
Confidence 999986 333 22222 358999999999986 6654
No 252
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.11 E-value=2.1 Score=51.32 Aligned_cols=295 Identities=9% Similarity=-0.038 Sum_probs=151.0
Q ss_pred CChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHH---h--cCCHHHHHHHHHHHHhhccC-ccchHHHHhhCCHH
Q 003227 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA---R--SMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVK 513 (837)
Q Consensus 440 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~ 513 (837)
.+-..++.|+.+++.++....... ...++.++.++ . +.++.++..++++++.++.. ......+ . ..++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~-~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-P-PAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-H-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-H-HHHH
Confidence 455678899999999987322111 12345555544 2 34899999999999998852 1111111 1 1244
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHh--cCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCC
Q 003227 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCK-FEGVQEQAARALANLAAHGDSNS 590 (837)
Q Consensus 514 ~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~ 590 (837)
.++..+ . +.++..|+.++.+++.+ .+..+.. ...+..+..++..++ +...+..+..++..++..-. +
T Consensus 550 ~l~~~l---~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~--~ 619 (971)
T 2x1g_F 550 LLVRGL---N---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR--P 619 (971)
T ss_dssp HHHHHH---H---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC--T
T ss_pred HHHHHh---C---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC--H
Confidence 444444 1 56899999999999953 2333322 234566666777632 36788888999998876411 1
Q ss_pred cccchhhccchHHHHHHH----cCCC--CHHHHHHHHHHHHhhcCC-----h---hhH------H--HHHHcCCHHHHHH
Q 003227 591 NNSAVGQEAGALEALVQL----TRSP--HEGVRQEAAGALWNLSFD-----D---RNR------E--AIAAAGGVEALVV 648 (837)
Q Consensus 591 ~~~~~~~~~~~i~~L~~l----L~~~--~~~~~~~a~~~L~~Ls~~-----~---~~~------~--~l~~~g~i~~L~~ 648 (837)
+..... -...+++++.. +... +++.+.....++..|+.- + +.. . .-.....++.+..
T Consensus 620 ~~~~~~-~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 698 (971)
T 2x1g_F 620 EEIPKY-LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKR 698 (971)
T ss_dssp THHHHH-HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHH
Confidence 111111 12333444433 3332 333334333343333211 0 000 0 0112346777777
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcccC--ccchhhhhccCChHHHHHHh----ccCCHHHHHHHHHHHHHHcC----Cccc
Q 003227 649 LAQSCSNASPGLQERAAGALWGLSVS--EANCIAIGREGGVAPLIALA----RSEAEDVHETAAGALWNLAF----NPGN 718 (837)
Q Consensus 649 ll~~~~~~~~~v~~~A~~~L~~l~~~--~~~~~~l~~~~~i~~L~~lL----~s~~~~v~~~a~~~L~~l~~----~~~~ 718 (837)
++.. ...+..+.+.+++++..++.. ++.. ..++.++..+ ..... ..+++.+..+.. ++..
T Consensus 699 ~l~~-~~~~~~v~e~~~~~~~~~~~~~~~~~~------p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~ 768 (971)
T 2x1g_F 699 IAEM-WVEEIDVLEAACSAMKHAITNLRSSFQ------PMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGC 768 (971)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHHHHHHHC--C------THHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC----
T ss_pred HHHh-ccccHHHHHHHHHHHHHHHHhhhhhcc------ccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcch
Confidence 7765 335789999999999997642 2111 1255555554 22111 124444444443 2222
Q ss_pred HHHHHHc--CCHHHHHHHHhcC------CcHHHHHHHHHHHHHhhCCCCcc
Q 003227 719 ALRIVEE--GGVPALVHLCSSS------GSKMARFMAALALAYMFDGRMDE 761 (837)
Q Consensus 719 ~~~i~~~--~~i~~L~~ll~~~------~~~~~~~~a~~aL~~l~~~~~~~ 761 (837)
...+.+. ..+.....++... +.++++.....-+..+....+..
T Consensus 769 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~ 819 (971)
T 2x1g_F 769 KPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV 819 (971)
T ss_dssp -HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence 2222211 1122333444332 24678788877778777766653
No 253
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.88 E-value=3.5 Score=41.14 Aligned_cols=215 Identities=10% Similarity=0.010 Sum_probs=154.9
Q ss_pred hHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHH
Q 003227 374 DFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAI 452 (837)
Q Consensus 374 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L 452 (837)
.+++.+.+..|+..|..-+-+.+..++.+..++........ ....+.+.. -.+.+..+++. +++++-..+-..|
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~---~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mL 147 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTR---TPTVEYICT--QQNILFMLLKGYESPEIALNCGIML 147 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB---CHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCC---CchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHH
Confidence 34555667888888888888888888888887776544321 112223332 22333333333 5788888999999
Q ss_pred HHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CccchHHHHhhCC---HHHHHHHHHhhCCCCHH
Q 003227 453 ANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGG---VKALVDLIFKWSSGGDG 528 (837)
Q Consensus 453 ~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~---i~~L~~lL~~~~~~~~~ 528 (837)
+.+...+.....+...+.+..+.+.+..++-++...|..++..+-. +......+...+. ....-.+| .+++--
T Consensus 148 Recir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll---~S~NYV 224 (341)
T 1upk_A 148 RECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL---HSENYV 224 (341)
T ss_dssp HHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT---TCSSHH
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh---cCCcch
Confidence 9999999999999998888899999999999999999999988764 4433334443322 44455666 568999
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHh----cCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 003227 529 VLERAAGALANLAADDKCSMEVAL----AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (837)
Q Consensus 529 ~~~~a~~~L~~l~~~~~~~~~l~~----~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 597 (837)
+++.++..|+.+-.+..+...+.. ..-+..++.+|++.+ ..+|..|-.+..-....+...+....++.
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~K~~~I~~IL~ 296 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNKTQPILDILL 296 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCCCChHHHHHHH
Confidence 999999999999998877655443 245788899999886 89999999999988886555554444443
No 254
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.88 E-value=4.1 Score=48.73 Aligned_cols=337 Identities=10% Similarity=-0.022 Sum_probs=172.1
Q ss_pred hcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHH---hcCChhHHHHHHHHHHHhccC-hHHHHH
Q 003227 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA---KSWREGLQSEAAKAIANLSVN-AKVAKA 464 (837)
Q Consensus 389 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 464 (837)
.+.+...+..|..+++.++....+.. ...++.++..+ .++++.++..++++++.++.. .+.. .
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~------------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~ 525 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY------------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-V 525 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC------------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-H
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh------------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-H
Confidence 34566778888889988876543321 11233444443 335788999999999998862 1111 2
Q ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHH----HHHHHhhCCCCHHHHHHHHHHHHHh
Q 003227 465 VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKAL----VDLIFKWSSGGDGVLERAAGALANL 540 (837)
Q Consensus 465 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L----~~lL~~~~~~~~~~~~~a~~~L~~l 540 (837)
.. ...++.++..+.+ +.++..|+.++.+++.. .+..+. ..++.+ ..++.. ...+...+..+..+++.+
T Consensus 526 ~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~--p~~~~il~~l~~~l~~-~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 526 MI-NSVLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLP--PYAANIVAVSQDVLMK-QIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp HH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCT--TTHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHH--hhHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHH
Confidence 22 2468888887754 78999999999999852 222221 223444 444442 223567888888999998
Q ss_pred hcCCC--chHHHHhcCcHHHHHHHHh----cCCCHHHHH---HHHHHHHHHhcCCCC-CC-c--------------ccc-
Q 003227 541 AADDK--CSMEVALAGGVHALVMLAR----SCKFEGVQE---QAARALANLAAHGDS-NS-N--------------NSA- 594 (837)
Q Consensus 541 ~~~~~--~~~~l~~~g~i~~L~~ll~----~~~~~~~~~---~a~~~L~~l~~~~~~-~~-~--------------~~~- 594 (837)
+.... ...... ...++.+...+. ...+++.+. ....+|..+...-.. .+ . ...
T Consensus 598 ~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (963)
T 2x19_B 598 LSALQVEEILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNP 676 (963)
T ss_dssp HTTSCHHHHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCH
T ss_pred HhcCCHHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCc
Confidence 86432 222221 123444444433 222344443 334444444332100 00 0 001
Q ss_pred -hhhccchHHHHHHHcC--CCCHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHH
Q 003227 595 -VGQEAGALEALVQLTR--SPHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSCS--NASPGLQERAAGA 667 (837)
Q Consensus 595 -~~~~~~~i~~L~~lL~--~~~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~L~~ll~~~~--~~~~~v~~~A~~~ 667 (837)
.-......+.+..++. ..+..+.+.++.++..+... .... ..++.++..+.... .+.+.+-..+..+
T Consensus 677 ~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~------~~l~~~~~~l~~~~~~~~~~~~l~l~~~l 750 (963)
T 2x19_B 677 VVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA------PMVPQLCEMLGRMYSTIPQASALDLTRQL 750 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG------GGHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc------ccHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 1122344455555553 24678888888888876431 1100 12344433321100 1223222222222
Q ss_pred HHhcccCccchhhhhc--cCChHHHHHHhc---cCCHHHHHHHHHHHHHHcC-CcccHHHHHHcC-----CHHHHHHHHh
Q 003227 668 LWGLSVSEANCIAIGR--EGGVAPLIALAR---SEAEDVHETAAGALWNLAF-NPGNALRIVEEG-----GVPALVHLCS 736 (837)
Q Consensus 668 L~~l~~~~~~~~~l~~--~~~i~~L~~lL~---s~~~~v~~~a~~~L~~l~~-~~~~~~~i~~~~-----~i~~L~~ll~ 736 (837)
+..+...+.....+.. ...+...+.++. ...++++......+..+.. .+.. +.... .++.++..+.
T Consensus 751 i~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~---~~~~~~~~~~i~~~~~~~l~ 827 (963)
T 2x19_B 751 VHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL---FLCERLDVKAVFQCAVLALK 827 (963)
T ss_dssp HHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG---GGCTTSCHHHHHHHHHHHTT
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH---HcCCcccHHHHHHHHHHHcC
Confidence 2222222212222221 112333344443 2468999999988888875 2211 11111 2334555566
Q ss_pred cCCcHHHHHHHHHHHHHhhCC
Q 003227 737 SSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 737 ~~~~~~~~~~a~~aL~~l~~~ 757 (837)
.. +..+...++..+..+...
T Consensus 828 ~~-~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 828 FP-EAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CS-CHHHHHHHHHHHHHHGGG
T ss_pred CC-CHHHHHHHHHHHHHHHhc
Confidence 44 477888999999888754
No 255
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.76 E-value=7.1 Score=47.14 Aligned_cols=363 Identities=10% Similarity=-0.024 Sum_probs=175.6
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcc----ccc--chhhHHHHHHh--CcHHHHHHHHhc-CChhHHHHHHHH
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDEN----ASI--DCGRAEAVMKD--GGIRLLLDLAKS-WREGLQSEAAKA 451 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~----~~~--~~~~~~~i~~~--g~i~~Lv~lL~~-~~~~~~~~a~~~ 451 (837)
++.+++.++ .++..+..+..+|..++..-.+. ... ....+..+... ..++.+...+.+ +++.++..++.+
T Consensus 140 l~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~ 218 (1049)
T 3m1i_C 140 IPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES 218 (1049)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 477888776 45556666677777666322110 000 00011222221 122333444544 467889999999
Q ss_pred HHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--cc----hHHHHh--hCCHHHHHH-----
Q 003227 452 IANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EH----KGAIAD--AGGVKALVD----- 517 (837)
Q Consensus 452 L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~----~~~l~~--~g~i~~L~~----- 517 (837)
+.+... -+- ..+.+...++.+.+.+- .++.++..|+.+|..+.... .. ...+.. .+.+..+..
T Consensus 219 l~~~l~wi~~--~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~ 295 (1049)
T 3m1i_C 219 LLRYLHWIPY--RYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295 (1049)
T ss_dssp HHHHTTTSCT--HHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHhhCCH--HHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCC
Confidence 988655 221 22344444565553222 37889999999999888541 21 111111 111221111
Q ss_pred ------HHHhhCCCCHHHHHHHHHHHHHhhc-------CC-CchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 003227 518 ------LIFKWSSGGDGVLERAAGALANLAA-------DD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (837)
Q Consensus 518 ------lL~~~~~~~~~~~~~a~~~L~~l~~-------~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (837)
........+.+.....+..+..+.. .+ +.+..+ ...++.++...... +.++...++..+..++
T Consensus 296 ~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~-d~~v~~~~lefw~~l~ 372 (1049)
T 3m1i_C 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIE-ERELFKTTLDYWHNLV 372 (1049)
T ss_dssp TSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHH
T ss_pred cccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCC-cHHHHHHHHHHHHHHH
Confidence 1111122334444455554443332 11 122211 13455555555554 4778888888877776
Q ss_pred c----CCCCCCcccchhhccchHHHHHHHcCCC-------------------CH---HHHHHHHHHHHhhcCChhhHHHH
Q 003227 584 A----HGDSNSNNSAVGQEAGALEALVQLTRSP-------------------HE---GVRQEAAGALWNLSFDDRNREAI 637 (837)
Q Consensus 584 ~----~~~~~~~~~~~~~~~~~i~~L~~lL~~~-------------------~~---~~~~~a~~~L~~Ls~~~~~~~~l 637 (837)
. ........+.. =...++.++..+..+ +. ..+..+..+|..++.... ..+
T Consensus 373 ~~l~~~~~~~~~~~~~--l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~--~~~ 448 (1049)
T 3m1i_C 373 ADLFYEPLKKHIYEEI--CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV--IDT 448 (1049)
T ss_dssp HHHHHSTTCGGGGHHH--HHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH--HHH
T ss_pred HHHHhchhHHHHHHHH--HHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH--HHH
Confidence 5 21101101111 112334444444221 11 223345556666652211 111
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCc-cc-hhhhhccCChHHHHHHhc-----cCCHHHHHHHHHHHH
Q 003227 638 AAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE-AN-CIAIGREGGVAPLIALAR-----SEAEDVHETAAGALW 710 (837)
Q Consensus 638 ~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~-~~-~~~l~~~~~i~~L~~lL~-----s~~~~v~~~a~~~L~ 710 (837)
... ..+.+-..+.. ...++..++.|+++++.++..- .. ...+ -...++.+..+.. ++.+.++..+++++.
T Consensus 449 l~~-v~~~l~~~l~~-~~~~W~~~eaal~algsia~~~~~~~e~~~-l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg 525 (1049)
T 3m1i_C 449 EEI-MISKLARQIDG-SEWSWHNINTLSWAIGSISGTMSEDTEKRF-VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG 525 (1049)
T ss_dssp HHH-HHHHHHHHHTS-SSCCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHhCC-CCCCHHHHHHHHHHHHHHhcccCchhhHHH-HHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 110 12223333332 2367899999999999987531 11 0110 0112233333322 123445556888888
Q ss_pred HHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 711 NLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 711 ~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.++..-......+. ..++.|+..+.++ ++.++..|+.++..++....
T Consensus 526 ry~~~~~~~~~~l~-~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 526 QYPRFLKAHWNFLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HCHHHHHHCHHHHH-HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 87652111122222 3466777777765 48899999999999987543
No 256
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.43 E-value=8.5 Score=45.94 Aligned_cols=300 Identities=10% Similarity=-0.003 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHc--
Q 003227 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEE-- 468 (837)
Q Consensus 391 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-- 468 (837)
+++.++..++.+++.++..-..+ + . .-...++.|+..|.+ +.++..|+.++.+++.+ .+..+...
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~----~----~-~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~ 567 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADH----P----V-MINSVLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAA 567 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHC----H----H-HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhC----H----H-HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHH
Confidence 56789999999999876421111 1 1 224667888888854 89999999999999852 11212100
Q ss_pred CCHHHHHHHHhc--CCHHHHHHHHHHHHhhccCc--cchHHHHhhCCHHHHHHHHHhh--CCCCHHHHH---HHHHHHHH
Q 003227 469 GGINILAVLARS--MNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKW--SSGGDGVLE---RAAGALAN 539 (837)
Q Consensus 469 g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~L~~lL~~~--~~~~~~~~~---~a~~~L~~ 539 (837)
..++.+..++.. -+...+..+..+++.++..- +......+. .++++...+... ...+++.+. ....+|..
T Consensus 568 ~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 568 NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 113344455554 35788888888988887532 222222222 455555544321 112444444 33444444
Q ss_pred hhc--CC--C----------------chH--HHHhcCcHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCCcccchh
Q 003227 540 LAA--DD--K----------------CSM--EVALAGGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (837)
Q Consensus 540 l~~--~~--~----------------~~~--~l~~~g~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (837)
+.. .. . .+. .-.....++.+..++.. ..+..+.+.++.++..+.... .+..
T Consensus 647 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~---~~~~--- 720 (963)
T 2x19_B 647 LFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTL---LDDF--- 720 (963)
T ss_dssp HHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---SSTT---
T ss_pred HHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhh---cccc---
Confidence 432 10 0 111 11122345555555543 234788899999999886531 1111
Q ss_pred hccchHHHHHHHc----CC-CCHHHHHHHHHHHHhhcCChhhHHHHHH--cCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 003227 597 QEAGALEALVQLT----RS-PHEGVRQEAAGALWNLSFDDRNREAIAA--AGGVEALVVLAQSCSNASPGLQERAAGALW 669 (837)
Q Consensus 597 ~~~~~i~~L~~lL----~~-~~~~~~~~a~~~L~~Ls~~~~~~~~l~~--~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~ 669 (837)
...++.++..+ .. +.+.+.......+.....++.....+.+ ...+..++.++.......++++......+.
T Consensus 721 --~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~ 798 (963)
T 2x19_B 721 --APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLA 798 (963)
T ss_dssp --GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHH
Confidence 12344444332 22 2333333333333323333222222211 112444445554312356899999988888
Q ss_pred hcccC-ccchhhhhccCC-hH----HHHHHhccCCHHHHHHHHHHHHHHcCC
Q 003227 670 GLSVS-EANCIAIGREGG-VA----PLIALARSEAEDVHETAAGALWNLAFN 715 (837)
Q Consensus 670 ~l~~~-~~~~~~l~~~~~-i~----~L~~lL~s~~~~v~~~a~~~L~~l~~~ 715 (837)
.+... +.. +..... ++ .++..++..+..+...++..+..+...
T Consensus 799 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 799 QALKRKPDL---FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HHHHHCGGG---GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHhCcHH---HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 87743 221 222222 44 445566778899999999999998763
No 257
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.32 E-value=0.018 Score=61.29 Aligned_cols=146 Identities=15% Similarity=0.179 Sum_probs=94.1
Q ss_pred CCCcceeeecCccc-chHHHHHcCCCccEEecCCCC-CCCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCC
Q 003227 102 CMNLQKLRFRGAES-ADSIIHLQARNLRELSGDYCR-KITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (837)
Q Consensus 102 ~~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~c~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~ 179 (837)
|.+|+.+.|...-. .....-..|++|+++++.... .+....+ .+ .+|+.+.+. .....+.... ..+|+
T Consensus 202 ~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF----~~-~~L~~i~lp-~~i~~I~~~a----F~~c~ 271 (401)
T 4fdw_A 202 YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAF----RE-SGITTVKLP-NGVTNIASRA----FYYCP 271 (401)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTT----TT-CCCSEEEEE-TTCCEECTTT----TTTCT
T ss_pred ecccCEEEeCCchheehhhHhhCCCCCCEEecCCCccCcccccc----cc-CCccEEEeC-CCccEEChhH----hhCCC
Confidence 57899999975421 122222268899999997632 2333333 22 589999996 2333333322 35699
Q ss_pred CCCEEEecCCCC-------CCHHHHHHHHhhCCCccEEEecCC-CCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhc
Q 003227 180 KLKKLRLSGIRD-------ICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHK 251 (837)
Q Consensus 180 ~L~~L~l~~~~~-------i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~ 251 (837)
+|+++.+.+... +.+.+ ...|++|+.+++.+. ..+.+.++.+|++|+.+.+..+ ++.-+ ...+.+
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~a----F~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~-~~aF~~ 344 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYC----LEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN--VTQIN-FSAFNN 344 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTT----TTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT--CCEEC-TTSSSS
T ss_pred CCCEEEeCCccccCCcccEECHHH----hhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc--ccEEc-HHhCCC
Confidence 999999977521 33332 347899999999863 3355678899999999999654 32221 122456
Q ss_pred CCCccEEEeccCCC
Q 003227 252 LPKLVGLDVSRTDV 265 (837)
Q Consensus 252 ~~~L~~L~l~~~~i 265 (837)
| +|+.|++.++.+
T Consensus 345 ~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 345 T-GIKEVKVEGTTP 357 (401)
T ss_dssp S-CCCEEEECCSSC
T ss_pred C-CCCEEEEcCCCC
Confidence 8 899999999743
No 258
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.12 E-value=0.018 Score=60.18 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=44.4
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCC
Q 003227 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (837)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~ 253 (837)
.+++|+.|+|+++..++.-.-. ....+++|++|+|++| .++. ..|..+++|++|+|++|. ++... ..+...++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~~~ 104 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA-LESLS-WKTVQGLS 104 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC-CSCCC-STTTCSCC
T ss_pred CCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc-cceeC-HHHcccCC
Confidence 4566777777752244321111 1224577777777777 3433 346677777777777763 22110 11122233
Q ss_pred CccEEEeccCCC
Q 003227 254 KLVGLDVSRTDV 265 (837)
Q Consensus 254 ~L~~L~l~~~~i 265 (837)
|+.|+|.+|.+
T Consensus 105 -L~~l~l~~N~~ 115 (347)
T 2ifg_A 105 -LQELVLSGNPL 115 (347)
T ss_dssp -CCEEECCSSCC
T ss_pred -ceEEEeeCCCc
Confidence 77777777654
No 259
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.08 E-value=3.8 Score=40.94 Aligned_cols=151 Identities=13% Similarity=0.032 Sum_probs=102.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHH-HHh----cCCHHHHHHHHHHHHhhccCccchH
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LAR----SMNRLVAEEAAGGLWNLSVGEEHKG 504 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~-lL~----~~~~~~~~~a~~~L~~l~~~~~~~~ 504 (837)
+..+.+++ +-..+.+.-++..++-+..++.....+.+.+.-..++. ++. ...+..+-.++++++|+..++..+.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 34555555 55567777888888888888887777766555444442 222 2356678899999999999988887
Q ss_pred HHHhhCCHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhcC---CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003227 505 AIADAGGVKALVDLIFKW-SSGGDGVLERAAGALANLAAD---DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (837)
Q Consensus 505 ~l~~~g~i~~L~~lL~~~-~~~~~~~~~~a~~~L~~l~~~---~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 580 (837)
.+... .+.+++.+... .+.+..++..++.++.|++.- ....+. ...++..+..+++...+.+....++.+|.
T Consensus 184 ~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 184 LMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 77753 35555555432 346888999999999999861 111111 11245556666766667899999999999
Q ss_pred HHhcC
Q 003227 581 NLAAH 585 (837)
Q Consensus 581 ~l~~~ 585 (837)
++...
T Consensus 260 tL~~~ 264 (304)
T 3ebb_A 260 TLISD 264 (304)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 99974
No 260
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.03 E-value=5 Score=48.47 Aligned_cols=347 Identities=8% Similarity=-0.013 Sum_probs=168.6
Q ss_pred HHHHHhhh-cCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhccC--
Q 003227 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-- 458 (837)
Q Consensus 382 ~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-- 458 (837)
+.+...+. ..+++++..+..++..+..--+. ..+.+...++.+.+.+- .++.++..|+.+|..+...
T Consensus 197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~---------~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~ 266 (1049)
T 3m1i_C 197 KLCFQVLEQGSSSSLIVATLESLLRYLHWIPY---------RYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKI 266 (1049)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT---------HHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH---------HHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCC
Confidence 44455553 34577888888888765432221 12445556666663322 3789999999999988753
Q ss_pred -hH---HHHHHHHc--CCHHHHHH-----------HHh---cCCHHHHHHHHHHHHhhcc--------CccchHHHHhhC
Q 003227 459 -AK---VAKAVAEE--GGINILAV-----------LAR---SMNRLVAEEAAGGLWNLSV--------GEEHKGAIADAG 510 (837)
Q Consensus 459 -~~---~~~~i~~~--g~i~~L~~-----------lL~---~~~~~~~~~a~~~L~~l~~--------~~~~~~~l~~~g 510 (837)
+. ....+... +.+..+.. ... +.+.+.....+..+..+.. .+.....+ ..
T Consensus 267 ~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~ 344 (1049)
T 3m1i_C 267 PQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LN 344 (1049)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HH
Confidence 21 11111110 11111111 111 1233333344444433321 11112211 12
Q ss_pred CHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhc----CCCchHHHHh--cCcHHHHHHHHhcCC-----------------
Q 003227 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAA----DDKCSMEVAL--AGGVHALVMLARSCK----------------- 567 (837)
Q Consensus 511 ~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~l~~--~g~i~~L~~ll~~~~----------------- 567 (837)
.++.++.+.. ..+.++...++.....++. .+..+..... ...++.++..+..++
T Consensus 345 ~l~~ll~~~~---~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~ 421 (1049)
T 3m1i_C 345 AHQYLIQLSK---IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1049)
T ss_dssp HHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHc---CCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhh
Confidence 3445555443 3577788888777766665 2222211110 112333333332110
Q ss_pred -CH---HHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH----HHHcC--CCCHHHHHHHHHHHHhhcCChh-h-HH
Q 003227 568 -FE---GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL----VQLTR--SPHEGVRQEAAGALWNLSFDDR-N-RE 635 (837)
Q Consensus 568 -~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L----~~lL~--~~~~~~~~~a~~~L~~Ls~~~~-~-~~ 635 (837)
+. ..+..+..+|..++... ...+++.+ -..+. ..+...++.++.+++.++..-. . ..
T Consensus 422 ~d~d~~~~~~~~~~~L~~l~~~~-----------~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~ 490 (1049)
T 3m1i_C 422 KESDTIQLYKSEREVLVYLTHLN-----------VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK 490 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhH
Confidence 11 22334556666666421 11233333 33343 3467889999999999986521 1 11
Q ss_pred HHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHc
Q 003227 636 AIAAAGGVEALVVLAQSCS--NASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLA 713 (837)
Q Consensus 636 ~l~~~g~i~~L~~ll~~~~--~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 713 (837)
.+. ...++.+..+..... .+.+.++..++++++.++.--........ ..++.++..++++++.|+..|+.++.+++
T Consensus 491 ~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~ 568 (1049)
T 3m1i_C 491 RFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVILKLFEFMHETHEGVQDMACDTFIKIV 568 (1049)
T ss_dssp HHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111 112333333322100 12344555688888887742111111111 24666777788888999999999999999
Q ss_pred CCcccHHHHH--Hc----CCHHHHH----HHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 714 FNPGNALRIV--EE----GGVPALV----HLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 714 ~~~~~~~~i~--~~----~~i~~L~----~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
... +..+. +. .-++.++ .++..-+ ........++++.+....+
T Consensus 569 ~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~-~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 569 QKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQ-PQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSC-HHHHHHHHHHHHHHHHTCC
T ss_pred HHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHcCC
Confidence 732 22222 01 1133333 3444322 3345566677777754433
No 261
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.90 E-value=5.3 Score=47.99 Aligned_cols=171 Identities=15% Similarity=0.065 Sum_probs=107.7
Q ss_pred HHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhc----CCCc-hHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 003227 512 VKALVDLIFKW-SSGGDGVLERAAGALANLAA----DDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (837)
Q Consensus 512 i~~L~~lL~~~-~~~~~~~~~~a~~~L~~l~~----~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (837)
+..+..++... ...++.++..++-+++.|.. +... ...++ ......+.+.+...+ .+-...++.+|+|+..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~-~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAK-EEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCC-hHHHHHHHHHhhccCC-
Confidence 44455566421 12456677777777766653 2211 11111 012333444455554 6777899999999986
Q ss_pred CCCCCcccchhhccchHHHHHHHcCC-------CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCH
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRS-------PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASP 658 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~ 658 (837)
...++.|..++.. ....++..|+.+|..++...+.. +-+.++++..+ ...++
T Consensus 470 -------------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n-~~e~~ 528 (1056)
T 1lsh_A 470 -------------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLN-VAIKS 528 (1056)
T ss_dssp -------------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHC-TTSCH
T ss_pred -------------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcC-CCCCh
Confidence 2467778887742 24578889999999998653211 23456677754 45899
Q ss_pred HHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhc-cCCHHHHHHHHHHHHHHcCC
Q 003227 659 GLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-SEAEDVHETAAGALWNLAFN 715 (837)
Q Consensus 659 ~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~ 715 (837)
++|..|..+|....-+. ..+..+...+. +.+..|..+....|.+++..
T Consensus 529 EvRiaA~~~Lm~t~P~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 529 ELRIRSCIVFFESKPSV---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHHHTCCCH---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCcCH---------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 99999999986532221 13556666664 47889999999999999873
No 262
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.75 E-value=3.8 Score=49.07 Aligned_cols=216 Identities=12% Similarity=-0.030 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHH---hc-CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccc
Q 003227 525 GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA---RS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll---~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 600 (837)
.+...++.++.+++.++....... ...++.++.++ .. ..++.++..+++++..++..-..++ .. -..
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~---~~--l~~ 546 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP---AY--IPP 546 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------C--HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH---HH--HHH
Confidence 456688899999999987422111 13344444433 21 1258899999999999886311111 11 135
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHc--CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-c-c
Q 003227 601 ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA--GGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-E-A 676 (837)
Q Consensus 601 ~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~-~ 676 (837)
+++.++..+ + +.++..|+.++.+++.. .+..+..+ ..+..+..++.. ...+...+..+..++..++.. + +
T Consensus 547 vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~-~~~~~~~~~~~~~ai~~i~~~~~~~ 620 (971)
T 2x1g_F 547 AINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNT-GRMKNSDSVRLMFSIGKLMSLLRPE 620 (971)
T ss_dssp HHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHHHHhCCHH
Confidence 667777777 2 67999999999999853 33333322 345555666654 224578888888888888653 2 2
Q ss_pred chhhhhccCChHHHHHHh----ccC--CHHHHHHHHHHHHHHcC-----Ccc-----------cHHHHHHcCCHHHHHHH
Q 003227 677 NCIAIGREGGVAPLIALA----RSE--AEDVHETAAGALWNLAF-----NPG-----------NALRIVEEGGVPALVHL 734 (837)
Q Consensus 677 ~~~~l~~~~~i~~L~~lL----~s~--~~~v~~~a~~~L~~l~~-----~~~-----------~~~~i~~~~~i~~L~~l 734 (837)
...... ...+++++..+ ... +++.+.....++..++. .+. ..-.-.....++.+..+
T Consensus 621 ~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 699 (971)
T 2x1g_F 621 EIPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRI 699 (971)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHH
Confidence 221111 12334444433 222 34344444444444432 110 01112234677888887
Q ss_pred HhcC-CcHHHHHHHHHHHHHhhC
Q 003227 735 CSSS-GSKMARFMAALALAYMFD 756 (837)
Q Consensus 735 l~~~-~~~~~~~~a~~aL~~l~~ 756 (837)
+... +++.+.+.++.+++.+..
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHH
Confidence 7653 357788888888887544
No 263
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.72 E-value=0.86 Score=44.40 Aligned_cols=134 Identities=7% Similarity=-0.070 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHH
Q 003227 568 FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALV 647 (837)
Q Consensus 568 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~ 647 (837)
+..+...++.+|..+...-....+.-......-++|.|+.-+.+..+.+|+.+-.++..+..-.+ - ...++.++
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-~-----~~v~~~l~ 173 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-P-----LKMTPMLL 173 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-H-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-H-----HHHHHHHH
Confidence 47888888888777643100011111111124578999999999999999998888877653211 1 11355666
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCCh---HHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 648 VLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGV---APLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 648 ~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i---~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
.-+.+ .+..+|..++..+..+-...... ...++ +.+..++.+.+..||.+|..++..+-.
T Consensus 174 ~g~ks---KN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 174 DALKS---KNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HGGGC---SCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHcc---CCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 66666 88999999999998876421111 23468 999999999999999999999987664
No 264
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.58 E-value=1.6 Score=43.29 Aligned_cols=188 Identities=12% Similarity=0.015 Sum_probs=113.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhh-ccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChh----h
Q 003227 559 LVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ-EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR----N 633 (837)
Q Consensus 559 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~----~ 633 (837)
+-.-+.+.+ -..|..|...|..+..........-..+. -....+.+-..+.+.+..++..++.++..++..-. .
T Consensus 14 l~e~l~sk~-WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKL-WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSS-HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCc-HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 445666664 88888888888877653211000000000 01334566678889999999999999988765311 1
Q ss_pred HHH--HHHcCCHHHHHHH-HhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHH
Q 003227 634 REA--IAAAGGVEALVVL-AQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALW 710 (837)
Q Consensus 634 ~~~--l~~~g~i~~L~~l-l~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~ 710 (837)
+.. ..-...++.|+.= +.+ ....++..|..++..++....... ..++.++..+.+.++.++..++..|.
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~---~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTS---SRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 111 1112234555542 443 778899999888877653221111 12455667778899999999999998
Q ss_pred HHcCC--cc--cHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 711 NLAFN--PG--NALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 711 ~l~~~--~~--~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
.+... .. +....++ ..++.+..++.+.+ +.||..|..++..+-..
T Consensus 165 ~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~-~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGD-RNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSS-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHH
Confidence 87541 11 1111111 23445667777765 99999999999888654
No 265
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.55 E-value=16 Score=43.58 Aligned_cols=145 Identities=8% Similarity=-0.080 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHhhcCChh-hHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHhcccCccchhhhhccCChH
Q 003227 612 PHEGVRQEAAGALWNLSFDDR-NREAIAAAGGVEALVVLAQSCSN--ASPGLQERAAGALWGLSVSEANCIAIGREGGVA 688 (837)
Q Consensus 612 ~~~~~~~~a~~~L~~Ls~~~~-~~~~l~~~g~i~~L~~ll~~~~~--~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~ 688 (837)
.+...+++++.+++.++.... ....-.-..+++.|+.++..... ....++..++++++.++.--....... ...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 578899999999999998732 21211112357778887753111 234455677799988774211111111 11344
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHH--c----CCHHHHHHHHhc---CCcHHHHHHHHHHHHHhhCCCC
Q 003227 689 PLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE--E----GGVPALVHLCSS---SGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 689 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~--~----~~i~~L~~ll~~---~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.|+..+.++++.++.+|++++.+++.. ++..+.. . .-++.+++.+.. ...+..+..+..|++.+...-+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 455556667899999999999999962 2333321 1 124444443322 2346677888999999988766
No 266
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.52 E-value=2.5 Score=42.15 Aligned_cols=205 Identities=11% Similarity=0.000 Sum_probs=147.9
Q ss_pred HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCccc-chhh-ccchHHHHHHHcCCCCHHHHHHHHHHHH
Q 003227 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNS-AVGQ-EAGALEALVQLTRSPHEGVRQEAAGALW 625 (837)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~-~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 625 (837)
.++...+.+..|+..+..-+ -+.+..++.+..++.........-. ..+. ...++..|+..- +++++-..+-..|+
T Consensus 72 ~ei~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHH
Confidence 45666788888888888775 7888999999999887532111000 0111 222333333322 35667777888899
Q ss_pred hhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC-ccchhhhhcc---CChHHHHHHhccCCHHH
Q 003227 626 NLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGRE---GGVAPLIALARSEAEDV 701 (837)
Q Consensus 626 ~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~---~~i~~L~~lL~s~~~~v 701 (837)
....++.....+...+.+..+...++. ++-++..-|..++..+-.. ......+... ..+..+-.+|.+++--+
T Consensus 149 ecir~e~la~~iL~~~~f~~fF~yv~~---~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT 225 (341)
T 1upk_A 149 ECIRHEPLAKIILWSEQFYDFFRYVEM---STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT 225 (341)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTC---SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcC---CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence 999998888889999899999999887 8999999898888776542 2222222222 24566778899999999
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHc----CCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 702 HETAAGALWNLAFNPGNALRIVEE----GGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 702 ~~~a~~~L~~l~~~~~~~~~i~~~----~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
++.++..|..+-.++.+...|.+. .-+..++.+|++. ++.+|..|.....-+..+..
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCC
Confidence 999999999999999888877653 3477788888876 59999999999888776543
No 267
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.45 E-value=1 Score=44.54 Aligned_cols=135 Identities=12% Similarity=0.092 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCC
Q 003227 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS 524 (837)
Q Consensus 445 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~ 524 (837)
...+...|.-+-.+++.-.-+++.+|+..+...++.++.++.+..+..|...+.....+..-. ...+|-++..++. .
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~--h 336 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEI--H 336 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhcc--C
Confidence 345666676677788899999999999999999999999999999999999887543322111 1257888888873 5
Q ss_pred CCHHHHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHHhcC------CCHHHHHHHHHHHHHH
Q 003227 525 GGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSC------KFEGVQEQAARALANL 582 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~------~~~~~~~~a~~~L~~l 582 (837)
+++++.....+.|.|...+. ..++.-+..|+|+.|-..+... .+..-+..||+.++|.
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 77889999999999998865 4556666779999888866532 2234445566655553
No 268
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.34 E-value=0.027 Score=58.68 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=46.3
Q ss_pred HhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCccEEEecCCCCCCh---HHh
Q 003227 147 VARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VAL 223 (837)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l 223 (837)
...+.+|+.|+|+ +++.++...-. ...++++|+.|+|+++ .++... ......+++|++|+|++|. ++. ..+
T Consensus 27 l~~~~~L~~L~l~--~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 100 (347)
T 2ifg_A 27 LPGAENLTELYIE--NQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNA-LESLSWKTV 100 (347)
T ss_dssp SCSCSCCSEEECC--SCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSC-CSCCCSTTT
T ss_pred CCCCCCeeEEEcc--CCCCCCCcChh-HhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCCc-cceeCHHHc
Confidence 3445667777774 22344321111 1234677777777776 444311 1122346777777777773 332 223
Q ss_pred hCCCCCCEeeccCCCCCCH
Q 003227 224 GNVLSVRFLSVAGTSNMKW 242 (837)
Q Consensus 224 ~~l~~L~~L~ls~~~~i~~ 242 (837)
..++ |+.|+|.+|....+
T Consensus 101 ~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 101 QGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSCC-CCEEECCSSCCCCC
T ss_pred ccCC-ceEEEeeCCCccCC
Confidence 3333 77777777654433
No 269
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.31 E-value=1.1 Score=44.44 Aligned_cols=188 Identities=15% Similarity=0.029 Sum_probs=114.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhccCh-H--HHHH-HHHcCC-HHHHHHHHhcCCHHHHHHHHHHHHhhccCc---cc-h
Q 003227 433 LLDLAKSWREGLQSEAAKAIANLSVNA-K--VAKA-VAEEGG-INILAVLARSMNRLVAEEAAGGLWNLSVGE---EH-K 503 (837)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~--~~~~-i~~~g~-i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~---~~-~ 503 (837)
+-+-|.|.+=..|..|+..|..+.... . .... +...+. .+.+-..+.+.+..++..++.++..++..- .. +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 456677888888999999888765421 1 1111 111222 455567778999999999999998887521 11 1
Q ss_pred HHH--HhhCCHHHHHHH-HHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003227 504 GAI--ADAGGVKALVDL-IFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (837)
Q Consensus 504 ~~l--~~~g~i~~L~~l-L~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 580 (837)
... .-...++.|++- + .+....++..+..++..+......... +++.++..+.+.+ +.++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l---~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Kn-pkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGL---TSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKL-PKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSC-HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccC-HHHHHHHHHHHH
Confidence 111 112235555543 3 457788888888888777653322222 2345556666665 899999998888
Q ss_pred HHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Q 003227 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (837)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (837)
.+............. .-..+++.+..++.+.++.||..|..++..+-..
T Consensus 165 ~~l~~fg~~~~~~k~-~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQT-FLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHH-HHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchh-HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 876531000000000 0012445677788999999999999998877543
No 270
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.16 E-value=1.4 Score=46.88 Aligned_cols=234 Identities=14% Similarity=-0.036 Sum_probs=140.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCc---hHHHHhcCc-HHHHHHHHh--------cCCCHHHHHHHHHHHHHHhcCCCCCC
Q 003227 523 SSGGDGVLERAAGALANLAADDKC---SMEVALAGG-VHALVMLAR--------SCKFEGVQEQAARALANLAAHGDSNS 590 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~~~~---~~~l~~~g~-i~~L~~ll~--------~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (837)
-+...++|--|+.+|+.+...... +..-..... +..+.-+.- +.--..|++.|+.+|+.+ .+- +
T Consensus 184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hL---p 259 (800)
T 3oc3_A 184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPL---I 259 (800)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTT---S
T ss_pred cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhC---C
Confidence 457788999999999888753211 000000011 222222221 122367999999999999 542 2
Q ss_pred cccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 003227 591 NNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWG 670 (837)
Q Consensus 591 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~ 670 (837)
.. ..++..++..+..+..+++-.++-.|..+ . +.... =.+.++.++..|.+ .+.+|+..|+.+|..
T Consensus 260 ~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL--~-DLL~~--Ld~Vv~aVL~GL~D---~DDDVRAVAAetLiP 325 (800)
T 3oc3_A 260 GP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL--K-EFVED--KDGLCRKLVSLLSS---PDEDIKLLSAELLCH 325 (800)
T ss_dssp CS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT--G-GGCCC--HHHHHHHHHHHTTC---SSHHHHHHHHHHHTT
T ss_pred hh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH--H-HHHHH--HHHHHHHHHhhcCC---cccHHHHHHHHHhhh
Confidence 11 35566666666778889999999888888 1 11000 13356677777776 899999999999999
Q ss_pred cccCccchhhhhccCChHHHHHHhccCC--HHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHH
Q 003227 671 LSVSEANCIAIGREGGVAPLIALARSEA--EDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAA 748 (837)
Q Consensus 671 l~~~~~~~~~l~~~~~i~~L~~lL~s~~--~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~ 748 (837)
++ .++.- ...+..+.+.|.+.+ ..-.......|..|+..+... -.....+|.|...++.+ ...||..+.
T Consensus 326 IA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~PFLRHt-ITSVR~AVL 396 (800)
T 3oc3_A 326 FP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFPCFTSP-VPEVRTSIL 396 (800)
T ss_dssp SC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGGGGTCS-SHHHHHHHH
T ss_pred hc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHhhhcCC-cHHHHHHHH
Confidence 88 21110 112333444443322 112223344555555433211 01125688888888876 488999999
Q ss_pred HHHHHhhCCCCcchhhhccCccCcccccchhHHHHHHHHHHHHHHHhcCChhHHHHHHhcc
Q 003227 749 LALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASS 809 (837)
Q Consensus 749 ~aL~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 809 (837)
.+|..+.. + .+++.|...++...+++++..+...+
T Consensus 397 ~TL~tfL~-----------------------~---~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 397 NMVKNLSE-----------------------E---SIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHTTTCCC-----------------------H---HHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHh-----------------------h---hHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99877751 1 36777777788899999997766655
No 271
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.72 E-value=0.46 Score=46.34 Aligned_cols=145 Identities=15% Similarity=0.083 Sum_probs=95.3
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHHHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCc
Q 003227 333 FLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDE 412 (837)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~~l~~l~s~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 412 (837)
.+.|..+..++++..-....++.+... ...+.+..+ .....-....+|.|+.-+.+..+.++..+-.++..++.
T Consensus 88 l~kw~~lr~~d~N~~v~~~~L~~L~~l-~~~l~~~~y-~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~---- 161 (266)
T 2of3_A 88 LLKWCTLRFFETNPAALIKVLELCKVI-VELIRDTET-PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD---- 161 (266)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHH-HHHHHHTTC-CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHhccc-cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----
Confidence 355666555666655544544444332 222344333 22221112236999999988889999888888776542
Q ss_pred ccccchhhHHHHHH-hCcHHHHHHHHhcCChhHHHHHHHHHHHhccChHHHHHHHHcCCH---HHHHHHHhcCCHHHHHH
Q 003227 413 NASIDCGRAEAVMK-DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI---NILAVLARSMNRLVAEE 488 (837)
Q Consensus 413 ~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i---~~L~~lL~~~~~~~~~~ 488 (837)
+.. ....+.++.-+++.|...+..++..+..+....... ...++ +.+.+++.+.|..++..
T Consensus 162 -----------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~a 226 (266)
T 2of3_A 162 -----------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNA 226 (266)
T ss_dssp -----------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHH
T ss_pred -----------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHH
Confidence 111 224567888899999999999999998886522111 13368 99999999999999999
Q ss_pred HHHHHHhhcc
Q 003227 489 AAGGLWNLSV 498 (837)
Q Consensus 489 a~~~L~~l~~ 498 (837)
|..++..+-.
T Consensus 227 Al~~lve~y~ 236 (266)
T 2of3_A 227 AINVLVACFK 236 (266)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876543
No 272
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=92.64 E-value=21 Score=42.43 Aligned_cols=99 Identities=13% Similarity=-0.040 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHhcccC-ccchhhh-hccCChHH----HHHHhc-----cCCHHHHHHHHHHHHHHcCCcccHHHHHH
Q 003227 656 ASPGLQERAAGALWGLSVS-EANCIAI-GREGGVAP----LIALAR-----SEAEDVHETAAGALWNLAFNPGNALRIVE 724 (837)
Q Consensus 656 ~~~~v~~~A~~~L~~l~~~-~~~~~~l-~~~~~i~~----L~~lL~-----s~~~~v~~~a~~~L~~l~~~~~~~~~i~~ 724 (837)
.++...++|+.+|+.++.. ......+ .....+|. +..++. ..++.|+..+++++...+..-...
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~----- 529 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE----- 529 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-----
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----
Confidence 5688899999999999864 2211111 11123333 444444 567999999999999998732211
Q ss_pred cCCHHHHHHHHhc-----CCcHHHHHHHHHHHHHhhCCCC
Q 003227 725 EGGVPALVHLCSS-----SGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 725 ~~~i~~L~~ll~~-----~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
...++.++..+-+ +.++.++..|+.++..+++...
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 2446666665544 2346799999999999987655
No 273
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.64 E-value=0.82 Score=48.69 Aligned_cols=190 Identities=17% Similarity=0.042 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHH
Q 003227 527 DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV 606 (837)
Q Consensus 527 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~ 606 (837)
..|++.|+.+|+.+ ..-+.. ..++..|+..+... .-+++..+.-.|..+... - .. -.++++.++
T Consensus 242 APVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL~DL----L--~~---Ld~Vv~aVL 305 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSG-DWQVQFSGLIALGYLKEF----V--ED---KDGLCRKLV 305 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHTGGG----C--CC---HHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCC-CeeehhhhHHHHHHHHHH----H--HH---HHHHHHHHH
Confidence 36899999999988 531111 34455555544544 488998999999888221 1 01 257788889
Q ss_pred HHcCCCCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCC
Q 003227 607 QLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGG 686 (837)
Q Consensus 607 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~ 686 (837)
..|.+.+++|+..|+.+|.-++ .++....+ +..+-..|.+. ++-..-.......|+.++..+.. .-.....
T Consensus 306 ~GL~D~DDDVRAVAAetLiPIA-~p~~l~~L-----L~iLWd~L~~L-DDLSASTgSVMdLLAkL~s~p~~--a~~dp~L 376 (800)
T 3oc3_A 306 SLLSSPDEDIKLLSAELLCHFP-ITDSLDLV-----LEKCWKNIESE-ELISVSKTSNLSLLTKIYRENPE--LSIPPER 376 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHTTSC-CSSTHHHH-----HHHHHHHHHTC-CSCCTTHHHHHHHHHHHHHHCTT--CCCCSGG
T ss_pred hhcCCcccHHHHHHHHHhhhhc-chhhHHHH-----HHHHHHHhhhh-cccchhhHHHHHHHHHHHcCCcc--cccChHH
Confidence 9999999999999999999998 32222222 33444444431 11111222344455555543321 1122367
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHH-HHHhcCCcHHHHHHHHHHHH
Q 003227 687 VAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALV-HLCSSSGSKMARFMAALALA 752 (837)
Q Consensus 687 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~-~ll~~~~~~~~~~~a~~aL~ 752 (837)
+|.|..++++.-..||.+++.+|..+. +. ..+..+. .++-.. .+.++..+..+-.
T Consensus 377 VPRL~PFLRHtITSVR~AVL~TL~tfL----~~------~~LRLIFQNILLE~-neeIl~lS~~VWk 432 (800)
T 3oc3_A 377 LKDIFPCFTSPVPEVRTSILNMVKNLS----EE------SIDFLVAEVVLIEE-KDEIREMAIKLLK 432 (800)
T ss_dssp GGGTGGGGTCSSHHHHHHHHHHTTTCC----CH------HHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHH----hh------hHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence 888999999999999999999998887 11 1222333 344444 4778888887774
No 274
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.48 E-value=0.11 Score=55.07 Aligned_cols=122 Identities=13% Similarity=0.220 Sum_probs=74.0
Q ss_pred hcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHHhhCCCccEEEecCC-CCCChHHhhC
Q 003227 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGN 225 (837)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~l~~ 225 (837)
..|.+|+++.+.. ....+.... ..+|++|+.+.+... ..+.+.++ ..|++|+++.|.++ ..+.+.++.+
T Consensus 262 ~~c~~L~~i~lp~-~~~~I~~~a----F~~c~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~aF~~ 332 (394)
T 4gt6_A 262 DSCAYLASVKMPD-SVVSIGTGA----FMNCPALQDIEFSSRITELPESVF----AGCISLKSIDIPEGITQILDDAFAG 332 (394)
T ss_dssp TTCSSCCEEECCT-TCCEECTTT----TTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTTTTT
T ss_pred eecccccEEeccc-ccceecCcc----cccccccccccCCCcccccCceee----cCCCCcCEEEeCCcccEehHhHhhC
Confidence 5688899998852 233333322 246888999988642 22443332 46889999998653 3466778889
Q ss_pred CCCCCEeeccCC-CCCCHHHHHHHHhcCCCccEEEeccCCCCHHHHHHHHhcCccccccccc
Q 003227 226 VLSVRFLSVAGT-SNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCAL 286 (837)
Q Consensus 226 l~~L~~L~ls~~-~~i~~~~l~~~~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~l~l~ 286 (837)
|.+|+.+.+..+ ..+.+. .+.+|++|+.+++.++... .. -...|.+|+.+.+.
T Consensus 333 C~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i~~~~~~~~---~~-~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 333 CEQLERIAIPSSVTKIPES----AFSNCTALNNIEYSGSRSQ---WN-AISTDSGLQNLPVA 386 (394)
T ss_dssp CTTCCEEEECTTCCBCCGG----GGTTCTTCCEEEESSCHHH---HH-TCBCCCCC------
T ss_pred CCCCCEEEECcccCEEhHh----HhhCCCCCCEEEECCceee---hh-hhhccCCCCEEEeC
Confidence 999999999643 223332 2467999999999886321 11 12357778877764
No 275
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.30 E-value=2.6 Score=42.14 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchH
Q 003227 525 GGDGVLERAAGALANLAADDKCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGAL 602 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i 602 (837)
..+..+..+++++.|+-.++..+..+... .+++.+...+.+ .+..++..++..+.|++....... ..-.....+
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~~~---~~~~~~~ll 235 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHKDH---NIEGKAQCL 235 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHHSC---CHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhcC---CchHHHHHH
Confidence 45667888999999999988877776653 233444433333 358899999999999987421111 100111233
Q ss_pred HHHHHHcCC-CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 003227 603 EALVQLTRS-PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGAL 668 (837)
Q Consensus 603 ~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L 668 (837)
..+..++.. .+.+....++.+|++|...+.....+.+.=.+...+.-+.+ .+....+.+.|..++
T Consensus 236 ~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~-~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 236 SLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS-VSEPAKVSECCRFIL 301 (304)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG-CCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 444445543 58889999999999998765544444443333333333333 134555555544433
No 276
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.56 E-value=0.17 Score=53.73 Aligned_cols=101 Identities=15% Similarity=0.246 Sum_probs=71.1
Q ss_pred hcCCCCCEEEecCCC-CCCHHHHHHHHhhCCCccEEEecCC-CCCChHHhhCCCCCCEeeccCC-CCCCHHHHHHHHhcC
Q 003227 176 LCCPKLKKLRLSGIR-DICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGT-SNMKWGVVSQVWHKL 252 (837)
Q Consensus 176 ~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~ls~~-~~i~~~~l~~~~~~~ 252 (837)
.+|.+|+++.+.... .+.... ...|++|+++.+... ..+.+.++.+|.+|+.+++..+ ..+.+. .+.+|
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C 333 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDD----AFAGC 333 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTC
T ss_pred eecccccEEecccccceecCcc----cccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHh----HhhCC
Confidence 468999999986531 233222 236899999999653 3456678899999999999653 122222 24679
Q ss_pred CCccEEEeccC--CCCHHHHHHHHhcCccccccccccc
Q 003227 253 PKLVGLDVSRT--DVGPITISRLLTSSKSLKVLCALNC 288 (837)
Q Consensus 253 ~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~l~l~~c 288 (837)
.+|+.+.+..+ .+++..+. +|++|+.+++.+.
T Consensus 334 ~~L~~i~ip~sv~~I~~~aF~----~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 334 EQLERIAIPSSVTKIPESAFS----NCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEEEECTTCCBCCGGGGT----TCTTCCEEEESSC
T ss_pred CCCCEEEECcccCEEhHhHhh----CCCCCCEEEECCc
Confidence 99999999763 57776654 5999999998765
No 277
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.46 E-value=0.038 Score=58.75 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=40.7
Q ss_pred hCCCccEEEecCC-CCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccC--CCCHHHHHHHHhcCcc
Q 003227 203 LCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT--DVGPITISRLLTSSKS 279 (837)
Q Consensus 203 ~~~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~ 279 (837)
.|++|+++.+.++ ..+.+.++.+|.+|+.+++... ++.-+ ...+.+|.+|+.+++..+ .+++..+. +|++
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~-~~aF~~c~~L~~i~lp~~l~~I~~~aF~----~C~~ 367 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL--VEEIG-KRSFRGCTSLSNINFPLSLRKIGANAFQ----GCIN 367 (394)
T ss_dssp TCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT--CCEEC-TTTTTTCTTCCEECCCTTCCEECTTTBT----TCTT
T ss_pred ccccccccccccccceechhhhcCCCCCCEEEeCCc--ccEEh-HHhccCCCCCCEEEECccccEehHHHhh----CCCC
Confidence 4566676666543 2344556666777777766432 22111 111345667777766553 34443332 4666
Q ss_pred ccccccc
Q 003227 280 LKVLCAL 286 (837)
Q Consensus 280 L~~l~l~ 286 (837)
|+.+++.
T Consensus 368 L~~i~lp 374 (394)
T 4fs7_A 368 LKKVELP 374 (394)
T ss_dssp CCEEEEE
T ss_pred CCEEEEC
Confidence 6666664
No 278
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.65 E-value=2.7 Score=39.63 Aligned_cols=129 Identities=15% Similarity=0.039 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHH-HhccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHHHHH
Q 003227 656 ASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIA-LARSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALV 732 (837)
Q Consensus 656 ~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~-lL~s~~~~v~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~ 732 (837)
+..++|..|+.+|... . + . ...++.+.. +-.+++-.|++.++.++..++. +++ ..++.+.
T Consensus 83 ~~deVR~~Av~lLg~~-~-~-~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~ 145 (240)
T 3l9t_A 83 DVYQVRMYAVFLFGYL-S-K-D------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIID 145 (240)
T ss_dssp SSHHHHHHHHHHHHHT-T-T-S------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHH
T ss_pred cchHHHHHHHHHHHhc-c-C-c------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHH
Confidence 7789999999988876 2 1 0 113445554 4456889999999999999884 443 2567778
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhCC-----CC-cchhhhccCccCcccccchhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 003227 733 HLCSSSGSKMARFMAALALAYMFDG-----RM-DEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAA 806 (837)
Q Consensus 733 ~ll~~~~~~~~~~~a~~aL~~l~~~-----~~-~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~~~~~ 806 (837)
..+.+++ +.+|..|...+.-.+.- ++ ....++.++..+....|+..=+ .++.- +...||+....++
T Consensus 146 ~W~~d~n-~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVa--n~LrD-----~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 146 EWLKSSN-LHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVG--NALRD-----ISKKFPDLVKIEL 217 (240)
T ss_dssp HHHHCSS-HHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHH--HHHHH-----HHTTCHHHHHHHH
T ss_pred HHhcCCC-HHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHH--HHHHH-----HhhhCHHHHHHHH
Confidence 8888765 99999999987543321 11 1123666677777777765333 45555 6778999888887
Q ss_pred hcc
Q 003227 807 ASS 809 (837)
Q Consensus 807 ~~~ 809 (837)
...
T Consensus 218 ~~w 220 (240)
T 3l9t_A 218 KNW 220 (240)
T ss_dssp HTC
T ss_pred HHh
Confidence 765
No 279
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.43 E-value=7.6 Score=46.59 Aligned_cols=138 Identities=12% Similarity=0.015 Sum_probs=81.8
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCCCCCcccc-hhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh
Q 003227 556 VHALVMLARSC---KFEGVQEQAARALANLAAHGDSNSNNSA-VGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD 631 (837)
Q Consensus 556 i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~ 631 (837)
+..+..++.+. .++.++..+.-++..+....-.....+. ..+ ..+...+.+.+...+.+-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence 44555565532 2356666666666666542100111111 111 22334444555666777788899999998753
Q ss_pred hhHHHHHHcCCHHHHHHHHhhc----CCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHh--ccCCHHHHHHH
Q 003227 632 RNREAIAAAGGVEALVVLAQSC----SNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA--RSEAEDVHETA 705 (837)
Q Consensus 632 ~~~~~l~~~g~i~~L~~ll~~~----~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL--~s~~~~v~~~a 705 (837)
..++.|.+++... .+....++.+|+++|..++..... ..-+.++++. ...++++|.+|
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~i~~n~~e~~EvRiaA 534 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPIFLNVAIKSELRIRS 534 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHHHHCTTSCHHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHHHhcCCCCChHHHHHH
Confidence 2466777776421 123567889999999998753110 1234566777 45778999999
Q ss_pred HHHHHH
Q 003227 706 AGALWN 711 (837)
Q Consensus 706 ~~~L~~ 711 (837)
..+|..
T Consensus 535 ~~~Lm~ 540 (1056)
T 1lsh_A 535 CIVFFE 540 (1056)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888865
No 280
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.29 E-value=3.2 Score=39.17 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=88.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHH-HcCCCCHHHHHHHHHHHHhhcC--ChhhHHHH
Q 003227 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ-LTRSPHEGVRQEAAGALWNLSF--DDRNREAI 637 (837)
Q Consensus 561 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~~Ls~--~~~~~~~l 637 (837)
.+..+. ..+++..|+..|..+ .. ....++.+.. +-.+++-.|++.++.++..++. +++
T Consensus 78 ~L~~~~-~deVR~~Av~lLg~~-~~------------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 78 LAYQSD-VYQVRMYAVFLFGYL-SK------------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHTCS-SHHHHHHHHHHHHHT-TT------------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHhCc-chHHHHHHHHHHHhc-cC------------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 344444 478999999887776 21 2356677766 5556788999999999988764 222
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCC
Q 003227 638 AAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN 715 (837)
Q Consensus 638 ~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 715 (837)
..++.+.....+ +++.+|..|...+..++.-+..+ ....-.++.|-.+..+++..||....++|..++.+
T Consensus 139 ---~~l~~~~~W~~d---~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 ---KALPIIDEWLKS---SNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp ---TTHHHHHHHHHC---SSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHhcC---CCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 256778888887 99999999999887665432111 00011334444455678899999999999999973
No 281
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=89.55 E-value=7.5 Score=38.52 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=94.3
Q ss_pred HHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcC-
Q 003227 532 RAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR- 610 (837)
Q Consensus 532 ~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~- 610 (837)
.+...|.-|..+.+...-+++..++..+....+.++ .++.++.+..|..++.. ... ...--.+.+|.++..+.
T Consensus 262 R~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN-~~l~RaG~KLLLQVSDa----ksL-~~t~L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 262 RTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPN-NDLIRAGCKLLLQVSDA----KAL-AKTPLENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHTTC----GGG-GTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccceeecccceeEEEEeecCC-cHHHHhhhheeeeecch----HHH-hhccccccchHHHHHhcc
Confidence 344444444445566688999999999999999886 88889999999998763 111 11123467888888875
Q ss_pred CCCHHHHHHHHHHHHhhcCC-hhhHHHHHHcCCHHHHHHHHhhcCC----CCHHHHHHHHHHHHh
Q 003227 611 SPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSN----ASPGLQERAAGALWG 670 (837)
Q Consensus 611 ~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~L~~ll~~~~~----~~~~v~~~A~~~L~~ 670 (837)
+++.++.....+.|.|...+ .+.++.-+..|++..|......... .+..-+..|+++++|
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 46889999999999999888 4557777889999999887754111 234445556555554
No 282
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.71 E-value=0.094 Score=55.69 Aligned_cols=145 Identities=10% Similarity=0.163 Sum_probs=91.2
Q ss_pred hCCCcceeeecCccc-chHHHHHcCCCccEEecCCCCC-CCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcC
Q 003227 101 RCMNLQKLRFRGAES-ADSIIHLQARNLRELSGDYCRK-ITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (837)
Q Consensus 101 ~~~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~c~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~ 178 (837)
.+.+|+.+.+..... .....-..|.+|+.+.+..... +... ....|+.|+.+.+. ...+.+. ....|
T Consensus 228 ~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~---~~~i~~~----~F~~~ 296 (394)
T 4fs7_A 228 SKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYG---SVIVPEK----TFYGC 296 (394)
T ss_dssp TTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEEC---SSEECTT----TTTTC
T ss_pred ccCCCceEEECCCceecccccccccccceeEEcCCCcceeecc----ccccccccceeccC---ceeeccc----ccccc
Confidence 346788888865422 1222223678899998876431 2221 13467888888884 2233322 23468
Q ss_pred CCCCEEEecCC-CCCCHHHHHHHHhhCCCccEEEecCC-CCCChHHhhCCCCCCEeeccCCCCCCHHHHHHHHhcCCCcc
Q 003227 179 PKLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (837)
Q Consensus 179 ~~L~~L~l~~~-~~i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~ls~~~~i~~~~l~~~~~~~~~L~ 256 (837)
.+|+.+.+... ..|.+.++ ..|++|+++++.+. ..+.+.++.+|.+|+.+++..+ ++.-+ ...+.+|++|+
T Consensus 297 ~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~-~~aF~~C~~L~ 369 (394)
T 4fs7_A 297 SSLTEVKLLDSVKFIGEEAF----ESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS--LRKIG-ANAFQGCINLK 369 (394)
T ss_dssp TTCCEEEECTTCCEECTTTT----TTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT--CCEEC-TTTBTTCTTCC
T ss_pred ccccccccccccceechhhh----cCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc--ccEeh-HHHhhCCCCCC
Confidence 89999998653 22443332 36899999999653 3456678899999999999654 32211 12246799999
Q ss_pred EEEeccC
Q 003227 257 GLDVSRT 263 (837)
Q Consensus 257 ~L~l~~~ 263 (837)
.+++..+
T Consensus 370 ~i~lp~~ 376 (394)
T 4fs7_A 370 KVELPKR 376 (394)
T ss_dssp EEEEEGG
T ss_pred EEEECCC
Confidence 9999764
No 283
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.60 E-value=5.1 Score=42.07 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHhcccC-ccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHH
Q 003227 655 NASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVH 733 (837)
Q Consensus 655 ~~~~~v~~~A~~~L~~l~~~-~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ 733 (837)
.+++..+..|+..+...... |+.+. .++..+++++.+.+..||..|+..|-.+|.+ +...++.+ .|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kiaD-----vL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVAD-----ILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHHH-----HHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHHH-----HHHH
Confidence 47899999999999888765 54433 3788999999999999999999999999988 66555554 9999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 734 LCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 734 ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
+|+..+ +.-....-.+|..+..-++
T Consensus 108 lLqtdd-~~E~~~V~~sL~sllk~Dp 132 (507)
T 3u0r_A 108 LLQTDD-SAEFNLVNNALLSIFKMDA 132 (507)
T ss_dssp HTTCCC-HHHHHHHHHHHHHHHHHCH
T ss_pred HHhccc-hHHHHHHHHHHHHHHhcCh
Confidence 999765 6566777777777766554
No 284
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.03 E-value=9.8 Score=45.39 Aligned_cols=215 Identities=10% Similarity=-0.008 Sum_probs=129.8
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhcc--
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV-- 457 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-- 457 (837)
+..++..+-+++.+.+..|-..|..+-. ..++...+..+|.+ .++.+|..|+.+|.+...
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~-----------------sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~ 80 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQD-----------------NPDAWQKADQILQFSTNPQSKFIALSILDKLITRK 80 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHH-----------------CTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHc-----------------CccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 3455555655556677778777875332 23344445556644 588999999999988653
Q ss_pred ----ChHHHHHHHHcCCHHHHHHHHhcC-----CHHHHHHHHHHHHhhccCc--cchHHHHhhCCHHHHHHHHHhhCCCC
Q 003227 458 ----NAKVAKAVAEEGGINILAVLARSM-----NRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGG 526 (837)
Q Consensus 458 ----~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~L~~lL~~~~~~~ 526 (837)
.++.+..+.+. .+..+.+...++ .+.++...+.++..++..+ +.. .+.++.++..+. .+
T Consensus 81 W~~L~~e~~~~Ir~~-Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W-----p~~l~dL~~~l~----~~ 150 (1023)
T 4hat_C 81 WKLLPNDHRIGIRNF-VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS----SS 150 (1023)
T ss_dssp GGGSCHHHHHHHHHH-HHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHTT----TC
T ss_pred hhcCCHHHHHHHHHH-HHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc-----hHHHHHHHHHhc----CC
Confidence 34444444322 344444432221 3556677778888877532 211 234566666663 34
Q ss_pred HHHHHHHHHHHHHhhcC------CC--------chHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCC
Q 003227 527 DGVLERAAGALANLAAD------DK--------CSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590 (837)
Q Consensus 527 ~~~~~~a~~~L~~l~~~------~~--------~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (837)
+.....++.+|..+..+ .+ .+..+... .+++.+...+....++++...+..++..... +
T Consensus 151 ~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~-----W 225 (1023)
T 4hat_C 151 VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLH-----W 225 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-----T
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-----h
Confidence 55667777777776642 11 11222222 2344455556555557777888888888764 2
Q ss_pred cccchhhccchHHHHH-HHcCCCCHHHHHHHHHHHHhhcC
Q 003227 591 NNSAVGQEAGALEALV-QLTRSPHEGVRQEAAGALWNLSF 629 (837)
Q Consensus 591 ~~~~~~~~~~~i~~L~-~lL~~~~~~~~~~a~~~L~~Ls~ 629 (837)
-....+.+...++.+. .++. +++++..|+.+|..+..
T Consensus 226 I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 226 IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHc
Confidence 2234455678888888 8774 57899999999998765
No 285
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=86.36 E-value=12 Score=44.57 Aligned_cols=219 Identities=11% Similarity=0.041 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhhc--CCC----chHHHHhc
Q 003227 481 MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS-GGDGVLERAAGALANLAA--DDK----CSMEVALA 553 (837)
Q Consensus 481 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~-~~~~~~~~a~~~L~~l~~--~~~----~~~~l~~~ 553 (837)
.++..+..|-..|..+-.+++ +......++.. .. .++.++..|+.+|.+... .++ .+..+ +
T Consensus 20 sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~-~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r- 87 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSST---------GWKICHEIFSE-KTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-R- 87 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-H-
T ss_pred CCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-H-
Confidence 378888888888888876653 34455566643 22 278899999988887765 233 22222 2
Q ss_pred CcHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCH-HHHHHHHHHHHhhc
Q 003227 554 GGVHALVMLARS----CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE-GVRQEAAGALWNLS 628 (837)
Q Consensus 554 g~i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~~Ls 628 (837)
..++.++.. ..+..++...+.++..+.... .+... .+.++.++.++..++. ......+.+|..++
T Consensus 88 ---~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~--~p~~W-----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~ 157 (980)
T 3ibv_A 88 ---DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQL--YPSNW-----NDFFASLQGVIAASSQSEFSNFYLKVLLSIG 157 (980)
T ss_dssp ---HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHH--TTTTC-----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh--CcccC-----chHHHHHHHHhcCCChhHHHHHHHHHHHHhH
Confidence 233333332 234678888888888887642 11111 3577888888765443 34444555555332
Q ss_pred CC---------hh--h-----HHHHHHcC---CHHHHHHHHhhc-CCCCHHHHHHHHHHHHhcccCccchhhhhccCChH
Q 003227 629 FD---------DR--N-----REAIAAAG---GVEALVVLAQSC-SNASPGLQERAAGALWGLSVSEANCIAIGREGGVA 688 (837)
Q Consensus 629 ~~---------~~--~-----~~~l~~~g---~i~~L~~ll~~~-~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~ 688 (837)
.. .. . +..+.+.. .++....++... ...++.++..++.++..+..-.+ -..+.....++
T Consensus 158 EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~ 236 (980)
T 3ibv_A 158 DEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMN 236 (980)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHH
T ss_pred HHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHH
Confidence 21 10 1 22222210 133333344321 02677888999999988875321 12355566777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHcC---CcccHHHHHH
Q 003227 689 PLIALARSEAEDVHETAAGALWNLAF---NPGNALRIVE 724 (837)
Q Consensus 689 ~L~~lL~s~~~~v~~~a~~~L~~l~~---~~~~~~~i~~ 724 (837)
.+.+++.+ ++++..|+.+|..+.. +++.+..+++
T Consensus 237 ~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 237 LLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 77777754 8999999999999875 3444444444
No 286
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=86.07 E-value=14 Score=38.19 Aligned_cols=150 Identities=16% Similarity=0.111 Sum_probs=97.6
Q ss_pred hhHHHHHHhCcHHHHHHHHhc-----------CChhHHHHHHHHHHHhccChHHHHHHHHcCC-HHHHHHHHhcCCHHHH
Q 003227 419 GRAEAVMKDGGIRLLLDLAKS-----------WREGLQSEAAKAIANLSVNAKVAKAVAEEGG-INILAVLARSMNRLVA 486 (837)
Q Consensus 419 ~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~-i~~L~~lL~~~~~~~~ 486 (837)
...+.+. .+|+..|+..|.. .+...+..++.+|..+..+......+..... +..+...+.+..+.++
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 3445565 6788888888852 2457788899999999988877777776554 8888898889999999
Q ss_pred HHHHHHHHhhccCc--cc-hHHHHh----------hCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-------c
Q 003227 487 EEAAGGLWNLSVGE--EH-KGAIAD----------AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-------C 546 (837)
Q Consensus 487 ~~a~~~L~~l~~~~--~~-~~~l~~----------~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~-------~ 546 (837)
..|+.+|..++..+ ++ ...+.+ ..-...++..++. ..+.+.+..++..+-.+...++ .
T Consensus 180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~--~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 257 (383)
T 3eg5_B 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHI 257 (383)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc--cCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999998888643 23 333332 1224555665542 2566676666666555555432 2
Q ss_pred hHHHHhcCcHHHHHHHHhcCCCHHHH
Q 003227 547 SMEVALAGGVHALVMLARSCKFEGVQ 572 (837)
Q Consensus 547 ~~~l~~~g~i~~L~~ll~~~~~~~~~ 572 (837)
+..+...|..+ ++.-++...++++.
T Consensus 258 R~ef~~~Gl~~-il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 258 RSELMRLGLHQ-VLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHTTHHH-HHHHHTTSCCHHHH
T ss_pred HHHHHHCChHH-HHHHHhcCCChhHH
Confidence 34455555555 44446655545544
No 287
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=85.96 E-value=9.2 Score=45.63 Aligned_cols=215 Identities=7% Similarity=-0.038 Sum_probs=130.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc-CChhHHHHHHHHHHHhcc--
Q 003227 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV-- 457 (837)
Q Consensus 381 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-- 457 (837)
+..++..+-+++++.+..|-..|..+-.. + ++...+..+|.+ .++.+|..|+.+|.+...
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~s--------p---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~ 92 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEH--------P---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTR 92 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCC--------S---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcC--------c---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 45566666566778888888888764321 1 223334445544 589999999999998654
Q ss_pred ----ChHHHHHHHHcCCHHHHHHHHhc-----CCHHHHHHHHHHHHhhccC--ccchHHHHhhCCHHHHHHHHHhhCCCC
Q 003227 458 ----NAKVAKAVAEEGGINILAVLARS-----MNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGG 526 (837)
Q Consensus 458 ----~~~~~~~i~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~ 526 (837)
.++.+..+.+. .+..+.+.... .++.++...+.++..++.. ++.. .+.++.++..+. .+
T Consensus 93 W~~L~~e~~~~LR~~-Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~----~~ 162 (1073)
T 3gjx_A 93 WKILPRNQCEGIKKY-VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASR----TS 162 (1073)
T ss_dssp GGGSCHHHHHHHHHH-HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHH----HC
T ss_pred hhhCCHHHHHHHHHH-HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhC----CC
Confidence 34444444322 34444443322 2467777888888888753 2221 234566676664 34
Q ss_pred HHHHHHHHHHHHHhhcC-CC-------------chHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCC
Q 003227 527 DGVLERAAGALANLAAD-DK-------------CSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590 (837)
Q Consensus 527 ~~~~~~a~~~L~~l~~~-~~-------------~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (837)
+......+.+|..+..+ .+ .+..+.+. ..++.+...+....++++...+..++..... +
T Consensus 163 ~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~s-----W 237 (1073)
T 3gjx_A 163 ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLN-----W 237 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----T
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH-----h
Confidence 55667777888877753 11 12233332 1234444455555567887888888888875 3
Q ss_pred cccchhhccchHHHHH-HHcCCCCHHHHHHHHHHHHhhcC
Q 003227 591 NNSAVGQEAGALEALV-QLTRSPHEGVRQEAAGALWNLSF 629 (837)
Q Consensus 591 ~~~~~~~~~~~i~~L~-~lL~~~~~~~~~~a~~~L~~Ls~ 629 (837)
-.-..+.+.+.++.++ .+| .+++++..|+.+|..+..
T Consensus 238 I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 238 IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 3345566778888774 666 467899999999988754
No 288
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.89 E-value=4.6 Score=42.35 Aligned_cols=98 Identities=19% Similarity=0.142 Sum_probs=74.0
Q ss_pred HhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhc
Q 003227 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (837)
Q Consensus 377 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (837)
.+.++..++.+..+.|..+|.+|+..|-.+|.+ +. ...+. ..|+++|.++++.-....-.+|..+.
T Consensus 63 ~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~-------i~kia-----DvL~QlLqtdd~~E~~~V~~sL~sll 128 (507)
T 3u0r_A 63 ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--EN-------LPRVA-----DILTQLLQTDDSAEFNLVNNALLSIF 128 (507)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TC-------HHHHH-----HHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hh-------hhhHH-----HHHHHHHhccchHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999976 33 23443 48899999988887777777777766
Q ss_pred c-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003227 457 V-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (837)
Q Consensus 457 ~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l 496 (837)
. ++. +.+..+...+..+++.+|+.++..|..=
T Consensus 129 k~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 129 KMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 5 542 2356666666667889999988887543
No 289
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=85.82 E-value=6.8 Score=37.45 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=87.7
Q ss_pred cCcHHHHHHHHhc----------CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHH
Q 003227 553 AGGVHALVMLARS----------CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAG 622 (837)
Q Consensus 553 ~g~i~~L~~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 622 (837)
.+|+..|+..+.. ..+...+..++.||..+... .......+...+++..+...|.++++.++..++.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~---~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~le 118 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN---KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAK 118 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS---HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC---hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHH
Confidence 4666666666542 11356677888999888763 2223334456778999999999999999999999
Q ss_pred HHHhhcCChh--h-HHHHHH----------cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCcc---c----hhhhh
Q 003227 623 ALWNLSFDDR--N-REAIAA----------AGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA---N----CIAIG 682 (837)
Q Consensus 623 ~L~~Ls~~~~--~-~~~l~~----------~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~---~----~~~l~ 682 (837)
.|..++..++ + ...+.+ ..-...++..+.. +.+.+.+.++...+..+..+++ . |..+.
T Consensus 119 LL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 196 (233)
T 2f31_A 119 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSELM 196 (233)
T ss_dssp HHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc--CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 8888777543 3 333322 2345566666653 3566666666655555554432 2 23333
Q ss_pred ccCChHHHHHHhc-cCCHHHHH
Q 003227 683 REGGVAPLIALAR-SEAEDVHE 703 (837)
Q Consensus 683 ~~~~i~~L~~lL~-s~~~~v~~ 703 (837)
.. |+..+++-++ .+++++..
T Consensus 197 ~~-Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 197 RL-GLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HT-THHHHHHHHHHCCCHHHHH
T ss_pred HC-ChHHHHHHHhccCCHHHHH
Confidence 34 5555555554 34555443
No 290
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=85.76 E-value=13 Score=35.54 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=94.8
Q ss_pred hhHHHHHHhCcHHHHHHHHhc----C-------ChhHHHHHHHHHHHhccChHHHHHHHHcC-CHHHHHHHHhcCCHHHH
Q 003227 419 GRAEAVMKDGGIRLLLDLAKS----W-------REGLQSEAAKAIANLSVNAKVAKAVAEEG-GINILAVLARSMNRLVA 486 (837)
Q Consensus 419 ~~~~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~~ 486 (837)
...+.+ ..+|+..|+..|.. . +...+..++.+|..+..+......+.... ++..+...+.++++.++
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r 113 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 113 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 344455 56777777777753 1 34668889999999998887777777654 48888888888999999
Q ss_pred HHHHHHHHhhccCcc--c-hHHHHhh----------CCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-------c
Q 003227 487 EEAAGGLWNLSVGEE--H-KGAIADA----------GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-------C 546 (837)
Q Consensus 487 ~~a~~~L~~l~~~~~--~-~~~l~~~----------g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~-------~ 546 (837)
..++..|..++..+. + ...+.++ .-...+++.++ ...+.+.+..++..+-.+...++ .
T Consensus 114 ~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~--~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 191 (233)
T 2f31_A 114 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK--SGTSIALKVGCLQLINALITPAEELDFRVHI 191 (233)
T ss_dssp HHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTS--TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHh--cCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 999999988886442 4 4444322 12344555553 23456666666655555555433 2
Q ss_pred hHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 003227 547 SMEVALAGGVHALVMLARSCKFEGVQE 573 (837)
Q Consensus 547 ~~~l~~~g~i~~L~~ll~~~~~~~~~~ 573 (837)
|.++...|..+ ++..++...++++..
T Consensus 192 R~ef~~~Gl~~-il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 192 RSELMRLGLHQ-VLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHTTHHH-HHHHHHHCCCHHHHH
T ss_pred HHHHHHCChHH-HHHHHhccCCHHHHH
Confidence 34454555444 445555544455543
No 291
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=85.43 E-value=16 Score=37.92 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=95.9
Q ss_pred HHHHhcCcHHHHHHHHhc----------CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 548 MEVALAGGVHALVMLARS----------CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
..++ .+|+..|+..|.. ..+...+..++.||..+... .......+.....+..|...+.++.+.++
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~---~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN---KFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS---HHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc---hhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 3444 5567777776642 12357778888999888753 22233445567889999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhcc-
Q 003227 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS- 696 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s- 696 (837)
..|+..|..++..++ ..||.+.+++.+.. .+. ..+..-+..++..+++
T Consensus 180 ~~aleLL~~lc~~~~------~~gG~~~VL~Al~~-------~~~------------------~~e~~RF~~lv~~L~~~ 228 (383)
T 3eg5_B 180 IDAAKLLSALCILPQ------PEDMNERVLEAMTE-------RAE------------------MDEVERFQPLLDGLKSG 228 (383)
T ss_dssp HHHHHHHHHHHTCCS------STTHHHHHHHHHHH-------HHH------------------HHTSCTTHHHHHTTSTT
T ss_pred HHHHHHHHHHHhCcC------cCCcHHHHHHHHHH-------HHH------------------hCCCCcHHHHHHHHHcc
Confidence 999999988877542 01234444554433 110 1123446677777765
Q ss_pred CCHHHHHHHHHHHHHHcCCccc---HHHHH---HcCCHHHHHHHHhcCCcHHH
Q 003227 697 EAEDVHETAAGALWNLAFNPGN---ALRIV---EEGGVPALVHLCSSSGSKMA 743 (837)
Q Consensus 697 ~~~~v~~~a~~~L~~l~~~~~~---~~~i~---~~~~i~~L~~ll~~~~~~~~ 743 (837)
.+.+.+.++...+-.+...+++ |..+. ..-|+..++.-++...++.+
T Consensus 229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence 4566666666666666554432 22222 23455555555665444443
No 292
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=85.05 E-value=37 Score=41.39 Aligned_cols=285 Identities=13% Similarity=0.004 Sum_probs=155.1
Q ss_pred CCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHH--hcCChhHHHHHHHHHHHhcc------ChHHH
Q 003227 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA--KSWREGLQSEAAKAIANLSV------NAKVA 462 (837)
Q Consensus 391 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~l~~------~~~~~ 462 (837)
.+.+.+.+|-..|..+-.. ..+...+...| .+.++.+|..|+..|.+... +++.+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~-----------------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k 87 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK-----------------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEK 87 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----------------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHH
T ss_pred CChHHHHHHHHHHHHHHhC-----------------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 3677888888888763211 12333444434 34588999999999998652 44555
Q ss_pred HHHHHcCCHHHHHHHHhc-------CCHHHHHHHHHHHHhhccCc--cchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHH
Q 003227 463 KAVAEEGGINILAVLARS-------MNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (837)
Q Consensus 463 ~~i~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a 533 (837)
..|.+ .+++.+.. ....++...+.++..++..+ +.. .+.++.++.++. .++...+.+
T Consensus 88 ~~Ir~-----~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~----~~~~~~e~~ 153 (1204)
T 3a6p_A 88 VYLKN-----SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSK----QGETQTELV 153 (1204)
T ss_dssp HHHHH-----HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHH----TCHHHHHHH
T ss_pred HHHHH-----HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhc----CCHHHHHHH
Confidence 55442 34444432 45788999999999888642 222 245677787775 255667888
Q ss_pred HHHHHHhhcC---CCc---------hHHHHhc--CcHHHHHHHHhcC------------------CCHHHHHHHHHHHHH
Q 003227 534 AGALANLAAD---DKC---------SMEVALA--GGVHALVMLARSC------------------KFEGVQEQAARALAN 581 (837)
Q Consensus 534 ~~~L~~l~~~---~~~---------~~~l~~~--g~i~~L~~ll~~~------------------~~~~~~~~a~~~L~~ 581 (837)
+.+|..++.+ .+. +..+.+. .+++.+...+... .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 8888888752 111 1122222 1223333334321 112344555555554
Q ss_pred HhcCCCCCCcccchhhcc--chHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh---hhHHHHHHc---CCHHHHHHHHhhc
Q 003227 582 LAAHGDSNSNNSAVGQEA--GALEALVQLTRSPHEGVRQEAAGALWNLSFDD---RNREAIAAA---GGVEALVVLAQSC 653 (837)
Q Consensus 582 l~~~~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~---~~~~~l~~~---g~i~~L~~ll~~~ 653 (837)
... +-....+.+. ..++.+..++. +++++..|+.+|..+.... +.+..++.. .++..++..+...
T Consensus 234 ~l~-----Wi~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~ 306 (1204)
T 3a6p_A 234 YID-----WVSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTA 306 (1204)
T ss_dssp TTT-----TSCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTC
T ss_pred HHh-----ccCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcC
Confidence 332 1111122222 36777776665 4678999999999887642 222222221 1133444443210
Q ss_pred -----CCCCHHHHHHHHHHHHhcccCccchhhhh------c----cCChHHHHHHhccCCHHHHHHHHHHHHHHcCC
Q 003227 654 -----SNASPGLQERAAGALWGLSVSEANCIAIG------R----EGGVAPLIALARSEAEDVHETAAGALWNLAFN 715 (837)
Q Consensus 654 -----~~~~~~v~~~A~~~L~~l~~~~~~~~~l~------~----~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 715 (837)
.+.+.++.+.-+.++..+... ....+. . .+.++.++.+..+++..+...+......+..+
T Consensus 307 ~~~~~~e~d~e~~k~l~~ll~~lg~~--l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 307 DGGGLVEKHYVFLKRLCQVLCALGNQ--LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHH--HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 012345555555566555421 111010 1 13456666677778888888888877766654
No 293
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.33 E-value=0.74 Score=48.28 Aligned_cols=131 Identities=12% Similarity=0.161 Sum_probs=79.5
Q ss_pred cCCCccEEecCCCCC-CCHHHHHHHHhcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCCHHHHHHH
Q 003227 123 QARNLRELSGDYCRK-ITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINAL 200 (837)
Q Consensus 123 ~~~~L~~L~l~~c~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~~~~l 200 (837)
.+.+|+.+.+..... +.+. ....|..|+.+.+.. ....+.+. ...+|.+|+.+.+... ..+....
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~-~v~~I~~~----aF~~~~~l~~i~l~~~i~~i~~~a---- 281 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPK-NVTSIGSF----LLQNCTALKTLNFYAKVKTVPYLL---- 281 (379)
T ss_dssp TCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECT-TCCEECTT----TTTTCTTCCEEEECCCCSEECTTT----
T ss_pred cccccceeeeccceeEEccc----cccCCccceEEEcCC-CccEeCcc----ccceeehhccccccccceeccccc----
Confidence 577888888765321 2221 124678899998852 22223322 2345888898888643 1222222
Q ss_pred HhhCCCccEEEecCC--CCCChHHhhCCCCCCEeeccCC-CCCCHHHHHHHHhcCCCccEEEeccC--CCCHHHH
Q 003227 201 AKLCPNLTDIGFLDC--LNVDEVALGNVLSVRFLSVAGT-SNMKWGVVSQVWHKLPKLVGLDVSRT--DVGPITI 270 (837)
Q Consensus 201 ~~~~~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~ls~~-~~i~~~~l~~~~~~~~~L~~L~l~~~--~i~~~~l 270 (837)
...|++|+++.+.++ ..+.+.++.+|.+|+.+.+... ..+.+. .+.+|.+|+.+.+..+ .+++..+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip~~v~~I~~~aF 352 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTISYPKSITLIESGAF 352 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEECCccCEEchhHh
Confidence 246889999998764 2456678889999999998643 222222 2467888999888653 3444444
No 294
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=78.33 E-value=43 Score=40.43 Aligned_cols=265 Identities=9% Similarity=-0.016 Sum_probs=134.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHH-
Q 003227 473 ILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA- 551 (837)
Q Consensus 473 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~- 551 (837)
.+++++.-....++......|=.+..+++... .+..|.+++. .++.+...++.+|.+|.-+++....+.
T Consensus 161 ki~~vl~vap~~lQ~diI~sLPeIl~ds~H~~------v~~~L~~lL~----~~~~L~~~iLdaLs~L~Ls~~~l~~vr~ 230 (1323)
T 3s4w_B 161 QMMQLISVAPVNLQHDFITSLPEILGDSQHAN------VGKELGELLV----QNTSLTVPILDVFSSLRLDPNFLSKIRQ 230 (1323)
T ss_dssp HHHHHHHHSCTTTHHHHHHTHHHHSCGGGHHH------HHHHHHHHHH----HCSTTHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHhcchhhHH------HHHHHHHHHh----cCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33444444444555555555555554432221 2344666664 244466666777777766654433332
Q ss_pred ---h------cCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-CC----cccchh----------hccc----hHH
Q 003227 552 ---L------AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS-NS----NNSAVG----------QEAG----ALE 603 (837)
Q Consensus 552 ---~------~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~----~~~~~~----------~~~~----~i~ 603 (837)
+ ...+|.+++++-...++.-...++..|+.--..... .+ .....+ .+++ ...
T Consensus 231 ~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~ 310 (1323)
T 3s4w_B 231 LVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIV 310 (1323)
T ss_dssp HHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHHHHH
T ss_pred HHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHH
Confidence 1 245888888665332232233444445442211000 00 000000 0011 111
Q ss_pred HHHHHcCCC---CHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhh
Q 003227 604 ALVQLTRSP---HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIA 680 (837)
Q Consensus 604 ~L~~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 680 (837)
.++..++.. ...+.++-+.++.++....+ +..+..++-++-. +.+...+..|-.++.+-.........
T Consensus 311 lild~lks~l~~~k~i~eAwlK~I~~~~~~~~-------hk~~Dl~vLlii~--s~n~~~rk~aE~ilrkkI~~G~it~~ 381 (1323)
T 3s4w_B 311 LVFDVIKSAIRYEKTISEAWFKAIERIESAAE-------HKSLDVVMLLIIY--STSTQTKKGVEKLLRNKIQSDCIQEQ 381 (1323)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT-------CCTHHHHHHHHHH--HHCHHHHHHHHHHHHHHHTTTCSCHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHhCCCcccc-------cchhHHHHHHHHH--cCCchhHHHHHHHHHHHHHcCCchHH
Confidence 233333332 45555555666666544322 2455555544322 14556778888888877654322222
Q ss_pred hhc----------cCChHHHHHH----hccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHH
Q 003227 681 IGR----------EGGVAPLIAL----ARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (837)
Q Consensus 681 l~~----------~~~i~~L~~l----L~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~ 746 (837)
+.. ...++.++.+ +++.++.++..+...-..+...-+ ...+...+..|+..+.++.+.++ ..
T Consensus 382 ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd---~~~qqeVl~~Lv~hi~sg~~~eV-d~ 457 (1323)
T 3s4w_B 382 LLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD---TYCQQEVVGALVTHVCSGTEAEV-DT 457 (1323)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHH-HH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHhhhcCCCcHHH-HH
Confidence 221 2355665544 478899999999888777765322 23334455688888777765554 44
Q ss_pred HHHHHHHhhCCCCc
Q 003227 747 AALALAYMFDGRMD 760 (837)
Q Consensus 747 a~~aL~~l~~~~~~ 760 (837)
|..+|..++...+.
T Consensus 458 ALdvL~~L~~~~~~ 471 (1323)
T 3s4w_B 458 ALDVLLELIVLNAS 471 (1323)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHhcCHH
Confidence 78888887765553
No 295
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=75.06 E-value=75 Score=38.74 Aligned_cols=207 Identities=13% Similarity=-0.021 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC------CCchHHHHhcCc
Q 003227 482 NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD------DKCSMEVALAGG 555 (837)
Q Consensus 482 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~------~~~~~~l~~~g~ 555 (837)
+...+..|-..|..+-.+++ +...+...|.. .+.+..++..|+.+|.+.... ++.+..+ +
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~-~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r--- 91 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAE-KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K--- 91 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTS-TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H---
T ss_pred ChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H---
Confidence 67778888888877754432 44445555532 456788999999999987642 1222222 2
Q ss_pred HHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcC
Q 003227 556 VHALVMLARSC------KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSF 629 (837)
Q Consensus 556 i~~L~~ll~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~ 629 (837)
..++..+... .+..++...+.++..++..+ .++.. .+.++.++.++.. ++..++.++.+|..++.
T Consensus 92 -~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d--~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 92 -NSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE--WPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp -HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH--STTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh--Ccccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 2334443321 34788888888998887752 12111 3678888888866 55667778888877754
Q ss_pred C-------hhhHH-----HHHHc--CCHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHhcccCccchh
Q 003227 630 D-------DRNRE-----AIAAA--GGVEALVVLAQSC----------------SNASPGLQERAAGALWGLSVSEANCI 679 (837)
Q Consensus 630 ~-------~~~~~-----~l~~~--g~i~~L~~ll~~~----------------~~~~~~v~~~A~~~L~~l~~~~~~~~ 679 (837)
. ...+. .+.+. ..++.+..++... ...+..+...++.++.++..-... .
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~ 241 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-S 241 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-H
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-H
Confidence 2 01111 12221 1222233333220 002345666777777766532111 1
Q ss_pred hhhccC--ChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 680 AIGREG--GVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 680 ~l~~~~--~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
.+.+.. .++.+..++. +++++..|+.+|..+..
T Consensus 242 ~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 242 HITAENCKLLEILCLLLN--EQELQLGAAECLLIAVS 276 (1204)
T ss_dssp HHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHT
T ss_pred HHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 122222 4555555554 57889999999999986
No 296
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=74.39 E-value=64 Score=31.66 Aligned_cols=145 Identities=10% Similarity=0.060 Sum_probs=92.0
Q ss_pred HHHHhhhcC------CHHHHHHHHHHhhccccccCcccccchhhHHHHHH--hCcHHHHHHHHhcCChhHHHHHHHHHHH
Q 003227 383 LLLSLMQST------QEDVQERAATGLATFVVINDENASIDCGRAEAVMK--DGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (837)
Q Consensus 383 ~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (837)
.+..+++++ +.+.-..|...|..++.+ .++=.+|++ -..+..|+ +..+..+.+++.|+++++.
T Consensus 26 ~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD--------i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~s 96 (315)
T 3qml_C 26 EMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD--------YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITS 96 (315)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS--------HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh--------HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHH
Confidence 444555554 333455666677765532 222223443 33334444 3344677899999999998
Q ss_pred hcc-ChHHHHHHHHcCC--HHHHHHHHhc-------CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCC
Q 003227 455 LSV-NAKVAKAVAEEGG--INILAVLARS-------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS 524 (837)
Q Consensus 455 l~~-~~~~~~~i~~~g~--i~~L~~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~ 524 (837)
... +|..-..|.+.-. +..++.-|.. ....++.+-+.+|-.|..++. .+ ...++..|.+++.. ..
T Consensus 97 sLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~-~~ 171 (315)
T 3qml_C 97 CLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYER-NN 171 (315)
T ss_dssp HHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHH-TT
T ss_pred HHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHcc-CC
Confidence 777 7887777766433 5555544433 355778888999999998752 11 24588999999975 24
Q ss_pred CCHHHHHHHHHHHHHhh
Q 003227 525 GGDGVLERAAGALANLA 541 (837)
Q Consensus 525 ~~~~~~~~a~~~L~~l~ 541 (837)
.++.++..++.++..+-
T Consensus 172 ~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 172 KDKQLQIKVLELISKIL 188 (315)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 48899999988877765
No 297
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=73.13 E-value=59 Score=33.57 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=94.8
Q ss_pred hHHHHHHhCcHHHHHHHHhc----C-------ChhHHHHHHHHHHHhccChHHHHHHHHcC-CHHHHHHHHhcCCHHHHH
Q 003227 420 RAEAVMKDGGIRLLLDLAKS----W-------REGLQSEAAKAIANLSVNAKVAKAVAEEG-GINILAVLARSMNRLVAE 487 (837)
Q Consensus 420 ~~~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~~~ 487 (837)
..+.+. .+|+..|+..|.. . +...+..++.+|..+..+......+.... ++..+...+.++++.++.
T Consensus 40 Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~ 118 (386)
T 2bnx_A 40 WVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 118 (386)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHH
T ss_pred HHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence 344453 5677777777753 1 34668889999999998877777666654 488888888888999999
Q ss_pred HHHHHHHhhccCcc--c-hHHHHh----------hCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-------ch
Q 003227 488 EAAGGLWNLSVGEE--H-KGAIAD----------AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-------CS 547 (837)
Q Consensus 488 ~a~~~L~~l~~~~~--~-~~~l~~----------~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~-------~~ 547 (837)
.++..|..++..+. + ...+.+ ..-...+++.+. ...+.+.+..++..+-.+...++ .|
T Consensus 119 ~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~--~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR 196 (386)
T 2bnx_A 119 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK--SGTSIALKVGCLQLINALITPAEELDFRVHIR 196 (386)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS--TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH--cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 99988888876442 3 333322 123445666554 24556666666655555555433 24
Q ss_pred HHHHhcCcHHHHHHHHhcCCCHHHHH
Q 003227 548 MEVALAGGVHALVMLARSCKFEGVQE 573 (837)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~ 573 (837)
..+...|..+ ++.-++...++++..
T Consensus 197 ~Ef~~~GL~~-il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 197 SELMRLGLHQ-VLQELREIENEDMKV 221 (386)
T ss_dssp HHHHHTTHHH-HHHHHTTCCCHHHHH
T ss_pred HHHHHCChHH-HHHHHhccCChhHHH
Confidence 4455555544 455666555565543
No 298
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=71.41 E-value=35 Score=35.34 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=88.9
Q ss_pred cCcHHHHHHHHhc----C------CCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHH
Q 003227 553 AGGVHALVMLARS----C------KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAG 622 (837)
Q Consensus 553 ~g~i~~L~~ll~~----~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 622 (837)
.+|+..|+..|.. + .+...+..++.||..+... .......+....++..+...+.++++.++..++.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~---~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vle 122 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN---KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS---HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC---HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHH
Confidence 4566666665542 1 1356678888999888763 2223334456678899999999999999999998
Q ss_pred HHHhhcCChh--h-HHHHH----------HcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCcc---c----hhhhh
Q 003227 623 ALWNLSFDDR--N-REAIA----------AAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA---N----CIAIG 682 (837)
Q Consensus 623 ~L~~Ls~~~~--~-~~~l~----------~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~---~----~~~l~ 682 (837)
.|..++..++ + ...+. +..-+..++..+.. ..+.+.+.+++..+..+..+++ . |..+.
T Consensus 123 LL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~ 200 (386)
T 2bnx_A 123 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSELM 200 (386)
T ss_dssp HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST--TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc--CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 8887777533 3 22222 22356667777764 3666777666666655554432 2 33444
Q ss_pred ccCChHHHHHHhcc-CCHHHHH
Q 003227 683 REGGVAPLIALARS-EAEDVHE 703 (837)
Q Consensus 683 ~~~~i~~L~~lL~s-~~~~v~~ 703 (837)
.. |+..++.-++. +++.+..
T Consensus 201 ~~-GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 201 RL-GLHQVLQELREIENEDMKV 221 (386)
T ss_dssp HT-THHHHHHHHTTCCCHHHHH
T ss_pred HC-ChHHHHHHHhccCChhHHH
Confidence 44 55555566643 4554443
No 299
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=70.17 E-value=43 Score=39.92 Aligned_cols=226 Identities=11% Similarity=0.022 Sum_probs=127.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-CCCC
Q 003227 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG-DSNS 590 (837)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 590 (837)
++.|-.++....+++.+.+..|-..|..+-.+++ +...+..++..+.++.++..|+..|.+..... ..-+
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 3344444443344567778888887777655543 34444555555567899999999999987641 0011
Q ss_pred cccchhhccchHHHHHHHcCC-----CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 003227 591 NNSAVGQEAGALEALVQLTRS-----PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (837)
Q Consensus 591 ~~~~~~~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~ 665 (837)
...........+..+...-.. .++.++...+.++..++...-.. .-.+.++.++..+.. ++......+
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~----~~~~~~~~L 170 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT----SESLCQNNM 170 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC----CHHHHHHHH
Confidence 111111223333444333222 24566666677777665431000 012456667776653 445666777
Q ss_pred HHHHhcccC-cc--------c-----hhhhhccCChHHHHHHh-----ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcC
Q 003227 666 GALWGLSVS-EA--------N-----CIAIGREGGVAPLIALA-----RSEAEDVHETAAGALWNLAFNPGNALRIVEEG 726 (837)
Q Consensus 666 ~~L~~l~~~-~~--------~-----~~~l~~~~~i~~L~~lL-----~s~~~~v~~~a~~~L~~l~~~~~~~~~i~~~~ 726 (837)
.+|..++.. .+ . +..+.+ .++.++.++ .+.++++...++.+|..+...-+. ..+++.+
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ 247 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETK 247 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSS
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccch
Confidence 777777642 11 1 122222 245555443 346788888899999999875432 3455666
Q ss_pred CHHHHH-HHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227 727 GVPALV-HLCSSSGSKMARFMAALALAYMFDGRM 759 (837)
Q Consensus 727 ~i~~L~-~ll~~~~~~~~~~~a~~aL~~l~~~~~ 759 (837)
.++.|+ .++. ++..+..|+.+|..+.....
T Consensus 248 ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~~ 278 (1073)
T 3gjx_A 248 LISTLIYKFLN---VPMFRNVSLKCLTEIAGVSV 278 (1073)
T ss_dssp HHHHHHHHTSS---SHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhcC---ChHHHHHHHHHHHHHHhccc
Confidence 666663 5543 47799999999999876433
No 300
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=69.63 E-value=2.3 Score=44.41 Aligned_cols=123 Identities=11% Similarity=0.132 Sum_probs=82.7
Q ss_pred hcCCCCCeEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHHhhCCCccEEEecCC-CCCChHHhhC
Q 003227 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGN 225 (837)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~l~~ 225 (837)
..+.+|+.+.+.. ....+.+.. ..+|.+|+.+.+... ..+.+.. ...|.+|+.+.+... ..+...++.+
T Consensus 214 ~~~~~l~~i~~~~-~~~~i~~~~----f~~~~~L~~i~lp~~v~~I~~~a----F~~~~~l~~i~l~~~i~~i~~~aF~~ 284 (379)
T 4h09_A 214 SYGKNLKKITITS-GVTTLGDGA----FYGMKALDEIAIPKNVTSIGSFL----LQNCTALKTLNFYAKVKTVPYLLCSG 284 (379)
T ss_dssp TTCSSCSEEECCT-TCCEECTTT----TTTCSSCCEEEECTTCCEECTTT----TTTCTTCCEEEECCCCSEECTTTTTT
T ss_pred ccccccceeeecc-ceeEEcccc----ccCCccceEEEcCCCccEeCccc----cceeehhccccccccceecccccccc
Confidence 3578899999852 222333222 246899999999753 1233322 346899999999754 2345567889
Q ss_pred CCCCCEeeccCC--CCCCHHHHHHHHhcCCCccEEEeccC--CCCHHHHHHHHhcCcccccccccc
Q 003227 226 VLSVRFLSVAGT--SNMKWGVVSQVWHKLPKLVGLDVSRT--DVGPITISRLLTSSKSLKVLCALN 287 (837)
Q Consensus 226 l~~L~~L~ls~~--~~i~~~~l~~~~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~l~l~~ 287 (837)
|++|+.+.+.++ ..+.+. .+.+|.+|+.+.|..+ .+++..+. +|++|+.+.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~aF~----~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTALKTIQVYAFK----NCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTT----TCTTCCCCCCCT
T ss_pred ccccccccccccccceehhh----hhcCCCCCCEEEcCccccEEHHHHhh----CCCCCCEEEECC
Confidence 999999999764 123322 3467999999999763 56666554 599999999854
No 301
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=69.54 E-value=1.7e+02 Score=35.43 Aligned_cols=180 Identities=14% Similarity=0.059 Sum_probs=100.9
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchHHH
Q 003227 474 LAVLARS---MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (837)
Q Consensus 474 L~~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l 550 (837)
+++.++. -...+.++-...+.++....+ ...++.++-++- .+.+...++.|-.++.+..........+
T Consensus 312 ild~lks~l~~~k~i~eAwlK~I~~~~~~~~-------hk~~Dl~vLlii--~s~n~~~rk~aE~ilrkkI~~G~it~~l 382 (1323)
T 3s4w_B 312 VFDVIKSAIRYEKTISEAWFKAIERIESAAE-------HKSLDVVMLLII--YSTSTQTKKGVEKLLRNKIQSDCIQEQL 382 (1323)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT-------CCTHHHHHHHHH--HHHCHHHHHHHHHHHHHHHTTTCSCHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHhCCCcccc-------cchhHHHHHHHH--HcCCchhHHHHHHHHHHHHHcCCchHHH
Confidence 4555554 266666666677777665332 234555554332 2345667888888888888766655444
Q ss_pred Hh----------cCcHHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHH
Q 003227 551 AL----------AGGVHALVMLAR---SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (837)
Q Consensus 551 ~~----------~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~ 617 (837)
+. ...++.++.+.+ .+.++.++..+......+-... .......++..|+....+++..-.
T Consensus 383 l~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-------d~~~qqeVl~~Lv~hi~sg~~~eV 455 (1323)
T 3s4w_B 383 LDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-------DTYCQQEVVGALVTHVCSGTEAEV 455 (1323)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-------CHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-------cchhHHHHHHHHHhhhcCCCcHHH
Confidence 32 234555554332 2344778777776655554431 123345677778777666655555
Q ss_pred HHHHHHHHhhcCChhhHHHHHHc-CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC
Q 003227 618 QEAAGALWNLSFDDRNREAIAAA-GGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~-g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~ 674 (837)
..|+.+|..|+.... ..+... -.+..++..+.. -+..--.....+|+.++.+
T Consensus 456 d~ALdvL~~L~~~~~--~~l~~~a~~l~giLD~l~~---l~~~QiRklf~iL~~laf~ 508 (1323)
T 3s4w_B 456 DTALDVLLELIVLNA--SAMRLNAAFVKGILDYLEN---MSPQQIRKIFCILSTLAFS 508 (1323)
T ss_dssp HHHHHHHHHHHHHCH--HHHHHTHHHHHGGGGGGGG---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH--HHHhHHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHHcC
Confidence 568888888875321 112111 113344444444 5544445567788887753
No 302
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=68.31 E-value=9.6 Score=32.91 Aligned_cols=69 Identities=7% Similarity=-0.019 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~ 498 (837)
+..|.+-|.+.++.++..|+..|..+.. .+.....+....-+..++.+++..++.|++.+...+..-+.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4466667888999999999999988877 35566666666667788888877889999998888876553
No 303
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.60 E-value=13 Score=33.04 Aligned_cols=68 Identities=7% Similarity=0.022 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhc
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLS 497 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~ 497 (837)
+..|.+-|++.++.++..|+..|-.+.. .+.....|....-+..|++++.. .++.|++.++..+..-+
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4466667788999999999999999887 35667777766678888888865 57889988888776554
No 304
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=63.00 E-value=1.1e+02 Score=29.90 Aligned_cols=148 Identities=9% Similarity=0.031 Sum_probs=95.2
Q ss_pred HHHHHHhcC------ChhHHHHHHHHHHHhccChHHHHHHHHcCCHHHHHHHH--hcCCHHHHHHHHHHHHhhccC-ccc
Q 003227 432 LLLDLAKSW------REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA--RSMNRLVAEEAAGGLWNLSVG-EEH 502 (837)
Q Consensus 432 ~Lv~lL~~~------~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~~l~~~-~~~ 502 (837)
.+..+++++ +.+.-..|+..|..++.+-+.=..|.+.. ...|-.++ ....+.+++.|+.+++....+ |..
T Consensus 26 ~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~A 104 (315)
T 3qml_C 26 EMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPV 104 (315)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHH
Confidence 455666665 44456789999999999887777777632 33443433 346778999999999988764 555
Q ss_pred hHHHHhh--CCHHHHHHHHHh----hCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcC-CCHHHHHHH
Q 003227 503 KGAIADA--GGVKALVDLIFK----WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC-KFEGVQEQA 575 (837)
Q Consensus 503 ~~~l~~~--g~i~~L~~lL~~----~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~a 575 (837)
...+.+. ..+..++.-|.. .......+++.-+++|-.|..++.. + ...++..|.+++... .++.++..+
T Consensus 105 l~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kv 180 (315)
T 3qml_C 105 VEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQIKV 180 (315)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHHHH
Confidence 5555443 234444443432 1123457788889999999987531 1 144667777777643 148888888
Q ss_pred HHHHHHHhc
Q 003227 576 ARALANLAA 584 (837)
Q Consensus 576 ~~~L~~l~~ 584 (837)
+..+..+-.
T Consensus 181 l~li~d~f~ 189 (315)
T 3qml_C 181 LELISKILK 189 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 888777653
No 305
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=60.42 E-value=18 Score=31.53 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=55.6
Q ss_pred cHHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHHhc------CCHHHHHHHHHHHHhhcc
Q 003227 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS------MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~a~~~L~~l~~ 498 (837)
++..|.+-+.+.++.++..|+..|-.+.. .+.....|.....+..|++++.. .++.|++.++..+..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34567777888999999999999999887 45667777777778889998853 578899998888876653
No 306
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=56.54 E-value=15 Score=32.03 Aligned_cols=69 Identities=19% Similarity=0.022 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHHhc------CCHHHHHHHHHHHHhhcc
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS------MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~a~~~L~~l~~ 498 (837)
+..|.+-|++.++.++..|+..|-.+.. .+.....+....-+..|++++.. .++.|++.++..+..-+.
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4456666788999999999999999887 45677778777778888888763 378899988887776653
No 307
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=55.93 E-value=8 Score=32.94 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=17.7
Q ss_pred CccEEEecCCCC--CChHHhhCCCCCCEeeccCCCCC
Q 003227 206 NLTDIGFLDCLN--VDEVALGNVLSVRFLSVAGTSNM 240 (837)
Q Consensus 206 ~L~~L~l~~~~~--~~~~~l~~l~~L~~L~ls~~~~i 240 (837)
+|++|+|++|.. +....+..+++|+.|+|++|+..
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 566666666521 11233455555666666555433
No 308
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=55.28 E-value=21 Score=33.77 Aligned_cols=73 Identities=10% Similarity=0.036 Sum_probs=57.6
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCCh--hhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
..++..|.+-|.+.++.++..|+..|-.+..+- .....+.....+..|..++.. ..++.|+..++..+..++.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR--QVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHH
Confidence 356778888889999999999999998888773 335556666677778888865 5778999999999988874
No 309
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=52.56 E-value=20 Score=32.07 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhccC--hHHHHHHHHcCCHHHHHHHHhc------CCHHHHHHHHHHHHhhcc
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS------MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~a~~~L~~l~~ 498 (837)
+..|.+-+++.++.++..|+..|-.+..+ +.....|....-+..|++++.. .+..|++.++..+..-+.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667778889999999999999999874 4567777777778889998862 368899998888776653
No 310
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.17 E-value=23 Score=33.47 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcc
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~ 498 (837)
+..|.+-|.+.++.++..|+..|..+.. .+.....|.....+..|.++++. .++.|++.++..+..-+.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4567777888999999999999999887 45567777776667778888765 578899988888776653
No 311
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=48.09 E-value=56 Score=28.00 Aligned_cols=72 Identities=8% Similarity=-0.042 Sum_probs=53.9
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHhc
Q 003227 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (837)
Q Consensus 379 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (837)
.++..+.+-|.+.++.++..|...|-.+..+.... ....+.....+..++.+++..++.++..++..+..-+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34678888899999999999998888776655432 2234445566777888887788899998888887655
No 312
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.05 E-value=37 Score=31.91 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=56.8
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
..++..|.+-|.++++.++..|+..|-.+..+ ......+.....+..|..++.. ..+..|+..++..+..++.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES--TPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHH
Confidence 35667777888899999999999999888877 3335566666678888888875 4678999999988888774
No 313
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=43.94 E-value=30 Score=30.66 Aligned_cols=72 Identities=7% Similarity=-0.082 Sum_probs=53.1
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHHcCC--cccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCC
Q 003227 686 GVAPLIALARSEAEDVHETAAGALWNLAFN--PGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (837)
Q Consensus 686 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~--~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~ 757 (837)
++..|.+-|.++++.++..|+..|-.+..+ +.-+..+.....+..|+.++.....+.|+..+...+..+...
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 455666777888999999999998888763 333444555556777888887545688999999988887653
No 314
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=42.14 E-value=93 Score=29.84 Aligned_cols=131 Identities=9% Similarity=-0.001 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCc-ccchhhccchHHHHHHHc
Q 003227 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN-NSAVGQEAGALEALVQLT 609 (837)
Q Consensus 531 ~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~i~~L~~lL 609 (837)
-.++.+++-+..++... +.+..++....+..++..+.-++++++|+-.+ +. .+..+.+......++..+
T Consensus 72 fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~----~~~g~~l~~~~~~~~~i~~~i 141 (253)
T 3gae_A 72 TPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNN----ENWGVKLLESNQVYKSIFETI 141 (253)
T ss_dssp HHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTC----TTTHHHHHTSHHHHTTHHHHS
T ss_pred chHHHHHHHHHcCCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccC----CchHHHHHhcchhHHHHHHHH
Confidence 34556666665555432 22222333222233578899999999999874 33 344444433445555544
Q ss_pred CC--------CCHHHHHHHHHHHHhhcCChhh-HHHHHHcCCHHHHHHHHhhc---C---CCCHHHHHHHHHHHHhcccC
Q 003227 610 RS--------PHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSC---S---NASPGLQERAAGALWGLSVS 674 (837)
Q Consensus 610 ~~--------~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~L~~ll~~~---~---~~~~~v~~~A~~~L~~l~~~ 674 (837)
.+ ++..++.+++..+.|++..-.. +. +......+++++... . ..+++....++.+|+++...
T Consensus 142 ~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 142 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 22 2556888889999998874111 10 112344555555420 0 14778889999999999854
No 315
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=40.95 E-value=2.1e+02 Score=26.03 Aligned_cols=112 Identities=12% Similarity=-0.043 Sum_probs=67.7
Q ss_pred HHHHHHHHhc------CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-
Q 003227 471 INILAVLARS------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD- 543 (837)
Q Consensus 471 i~~L~~lL~~------~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~- 543 (837)
+|-+++.+.+ .+.......+.+...|..++...-...-...+|.++.++-...-....+++.|+..|..++..
T Consensus 42 lPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~ 121 (196)
T 4atg_A 42 VPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTY 121 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHh
Confidence 5666655533 366677777788888887763322122222567777766532233337999999999999872
Q ss_pred -CCchHHHHhcCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 003227 544 -DKCSMEVALAGGVHALVMLARSC-KFEGVQEQAARALANLAA 584 (837)
Q Consensus 544 -~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~ 584 (837)
+... -.....+..+.+.+.++ .+......|+..|..+..
T Consensus 122 ~~~y~--~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 122 SRSYK--TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp TTTST--THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred CccCc--hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 2111 11223456677766543 346777788888887764
No 316
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.91 E-value=34 Score=32.13 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhccC--hHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhc
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLS 497 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~ 497 (837)
+..|.+-|.+.++.++..|+..|..+..+ +.....|++..-+..|+.++.. .+..|++.++..+..-+
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 44566677889999999999999998874 4466667666667778887764 56788888777766554
No 317
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=38.58 E-value=57 Score=28.32 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=57.4
Q ss_pred cchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHhccc
Q 003227 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSC---SNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 599 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~L~~ll~~~---~~~~~~v~~~A~~~L~~l~~ 673 (837)
..++..|.+-+.+.++.++..|+..|-.+..+ ......+.....+..|+.++... ...++.|+..++..+..++.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 35677787888889999999999988888776 33356666667788888888531 13678999999999998874
No 318
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=36.88 E-value=1.5e+02 Score=35.00 Aligned_cols=178 Identities=10% Similarity=0.007 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhc---CCCHHHHHHHHHHHH--HHhcCCCCCCcccchhh
Q 003227 523 SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS---CKFEGVQEQAARALA--NLAAHGDSNSNNSAVGQ 597 (837)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~---~~~~~~~~~a~~~L~--~l~~~~~~~~~~~~~~~ 597 (837)
.+.-.+++..|-.+|......-.....+ ++|.+++.|+. ..+.+-.+.|+.+|. .+... .. ..--.
T Consensus 143 ~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~---~~--~d~~~ 213 (997)
T 1vsy_5 143 TSLYPDIYKPAQGTLVHCMKQLVGSYGV----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK---LM--TDYKD 213 (997)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTBTTHHHH----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH---GG--GCHHH
T ss_pred cCchHHHHHHHHHHHHHHHHhcccHHHH----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH---Hh--cChHH
Confidence 4567889999998888877643222222 36777777765 334455555555544 11110 00 00011
Q ss_pred ccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCC---------------------h---------------hhHHHHHH--
Q 003227 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFD---------------------D---------------RNREAIAA-- 639 (837)
Q Consensus 598 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~---------------------~---------------~~~~~l~~-- 639 (837)
-...++.|++....+.++++..+-.+...+... + ..+....+
T Consensus 214 ~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~ 293 (997)
T 1vsy_5 214 IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLL 293 (997)
T ss_dssp HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124556666666666666666555443333220 0 00111111
Q ss_pred cCCHHHHHHHHhhcCCCC--HHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCHHHHHHHHHHHHHHcC
Q 003227 640 AGGVEALVVLAQSCSNAS--PGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 640 ~g~i~~L~~ll~~~~~~~--~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 714 (837)
.+....|+++..+ +.. ......++..|.++....+. ......+..+++.+.++++.++..|..++..+..
T Consensus 294 ~~L~~~l~~~~~~--~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~ 365 (997)
T 1vsy_5 294 VDLQDKLLDKLDN--EKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCN 365 (997)
T ss_dssp HHHHHHHHHHHHS--STTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 1223333455422 355 77888888886666533211 1223356677888889999999999988866653
No 319
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=35.57 E-value=3e+02 Score=26.28 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHH
Q 003227 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607 (837)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~ 607 (837)
+.+...+.-...+..+.+.. +. ...++.++.+..+ .+.++++..+..+...+... .-.....++.|..
T Consensus 30 ~~kl~~L~qa~el~~~~dp~--ll-~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~~k--------~~l~~~~l~~L~~ 97 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE--LA-EEFLESVLSLAHD-SNMEVRKQVVAFVEQVCKVK--------VELLPHVINVVSM 97 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG--GH-HHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHh--HH-HHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 45555555555554432211 11 1245666665544 45889999999998887531 1123467788888
Q ss_pred HcCCCCHHHHHHHHHHHHhh
Q 003227 608 LTRSPHEGVRQEAAGALWNL 627 (837)
Q Consensus 608 lL~~~~~~~~~~a~~~L~~L 627 (837)
+++++++.+.+.++.+..++
T Consensus 98 Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 98 LLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HTTCSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHH
Confidence 88888888888877766554
No 320
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=35.11 E-value=38 Score=29.40 Aligned_cols=70 Identities=14% Similarity=-0.036 Sum_probs=55.0
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--ccchhhhhccCChHHHHHHhcc------CCHHHHHHHHHHHHHHc
Q 003227 642 GVEALVVLAQSCSNASPGLQERAAGALWGLSVS--EANCIAIGREGGVAPLIALARS------EAEDVHETAAGALWNLA 713 (837)
Q Consensus 642 ~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~--~~~~~~l~~~~~i~~L~~lL~s------~~~~v~~~a~~~L~~l~ 713 (837)
++..|..-+.+ .++.++..|+..|-.+..+ +..+..+.....+..|+.++.. .++.|+..++..+..-+
T Consensus 39 a~rai~krl~~---~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQS---PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35556666665 8999999999999988865 5677788888888889988863 36899999988888765
Q ss_pred C
Q 003227 714 F 714 (837)
Q Consensus 714 ~ 714 (837)
.
T Consensus 116 ~ 116 (148)
T 1mhq_A 116 V 116 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 321
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=34.24 E-value=4e+02 Score=27.26 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=48.7
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003227 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (837)
Q Consensus 428 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l 496 (837)
..++.++.+-.+.+.++|+..+..+...+. +.+.... .++.|..+++++++.+...++.+..++
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK-----LIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 557788888778899999999999988776 4444322 367788888888888888888776654
No 322
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=34.01 E-value=46 Score=31.98 Aligned_cols=103 Identities=11% Similarity=-0.014 Sum_probs=66.9
Q ss_pred cCCCCHHHHHHHHHHHHhhcCChh-hHHHHHHcCCHHHHHHHHhhcC-----CCCHHHHHHHHHHHHhcccC-ccchhhh
Q 003227 609 TRSPHEGVRQEAAGALWNLSFDDR-NREAIAAAGGVEALVVLAQSCS-----NASPGLQERAAGALWGLSVS-EANCIAI 681 (837)
Q Consensus 609 L~~~~~~~~~~a~~~L~~Ls~~~~-~~~~l~~~g~i~~L~~ll~~~~-----~~~~~v~~~A~~~L~~l~~~-~~~~~~l 681 (837)
+.+.++..+.-++++++|+-.++. .++.+..+.....++..+.+.. ..+..++.+++..+.|++.. ...+.
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 445577889999999999999988 6766654433444444442200 13567888999999999852 11111
Q ss_pred hccCChHHHHHHhc---------cCCHHHHHHHHHHHHHHcC
Q 003227 682 GREGGVAPLIALAR---------SEAEDVHETAAGALWNLAF 714 (837)
Q Consensus 682 ~~~~~i~~L~~lL~---------s~~~~v~~~a~~~L~~l~~ 714 (837)
+......+++++. ..+++....++.+|+++..
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1223345555554 2377899999999999885
No 323
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=33.17 E-value=1.9e+02 Score=24.80 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=57.8
Q ss_pred cccchhhccchHHHHHHHcCC------CCHHHHHHHHHHHHhhcCChhhHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH
Q 003227 591 NNSAVGQEAGALEALVQLTRS------PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERA 664 (837)
Q Consensus 591 ~~~~~~~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A 664 (837)
+.+..+.+.|++..+-..|.. ++..+|+....+|.++-.+ ++.+.++|.-..++-+-.+ ..+.++.+..|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~---~e~Lk~SglGkvv~~l~k~-~~et~~nk~la 127 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH---KEHLVTSGVGKIVYFYSIN-PKESKEVRASA 127 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC---HHHHHHHCHHHHHHHHHHC-TTSCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC---HHHhhcCCCCcchhhhhcC-CccCHHHHHHH
Confidence 345566778888888888764 4678999999999998644 5667777555555544444 67889999999
Q ss_pred HHHHHhcc
Q 003227 665 AGALWGLS 672 (837)
Q Consensus 665 ~~~L~~l~ 672 (837)
-..+..++
T Consensus 128 ~~Li~~Ws 135 (145)
T 2xpp_A 128 KALVQKWT 135 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888876
No 324
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.24 E-value=78 Score=27.73 Aligned_cols=69 Identities=9% Similarity=-0.062 Sum_probs=50.8
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHhcc--ChHHHHHHHHcCCHHH-HHHHHhc---CCHHHHHHHHHHHHhhcc
Q 003227 430 IRLLLDLAKS-WREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINI-LAVLARS---MNRLVAEEAAGGLWNLSV 498 (837)
Q Consensus 430 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~-L~~lL~~---~~~~~~~~a~~~L~~l~~ 498 (837)
+..|.+-|++ .++.++..|+..|..+.. .+.....+++..-+.. |++++.. +...|++.++..+..-+.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4456666764 789999999999999887 3667777777767777 7888742 356788888877766553
No 325
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=32.18 E-value=51 Score=29.44 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=55.4
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccC--ccchhhhhccCChHHHHHHhcc------CCHHHHHHHHHHHHHHc
Q 003227 642 GVEALVVLAQSCSNASPGLQERAAGALWGLSVS--EANCIAIGREGGVAPLIALARS------EAEDVHETAAGALWNLA 713 (837)
Q Consensus 642 ~i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~--~~~~~~l~~~~~i~~L~~lL~s------~~~~v~~~a~~~L~~l~ 713 (837)
++..|..-+.+ .++.++..|+.+|-.+..+ ...+..+.....+..|+.++.. .+..|+..++..+..-+
T Consensus 51 A~ral~krl~~---~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQS---PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35566666766 8999999999999998875 5677778888888899998852 35889999998888766
Q ss_pred C
Q 003227 714 F 714 (837)
Q Consensus 714 ~ 714 (837)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 326
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=31.54 E-value=2.4e+02 Score=25.70 Aligned_cols=115 Identities=16% Similarity=0.039 Sum_probs=71.2
Q ss_pred CHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcC
Q 003227 511 GVKALVDLIFK---WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK--FEGVQEQAARALANLAAH 585 (837)
Q Consensus 511 ~i~~L~~lL~~---~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~ 585 (837)
.+|.++.++.. ..-.+.......+.....|..++...-...-...+|.++..+-... ...++..|+..|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 36666655532 1334667777788888888887765433322345777777664322 137999999999999885
Q ss_pred CCCCCcccchhhccchHHHHHHHcCCC--CHHHHHHHHHHHHhhcC
Q 003227 586 GDSNSNNSAVGQEAGALEALVQLTRSP--HEGVRQEAAGALWNLSF 629 (837)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~~Ls~ 629 (837)
..... ......+...+.+.+.++ +.....-|+..|..+..
T Consensus 121 ~~~~y----~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 121 YSRSY----KTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HTTTS----TTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred hCccC----chHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 32111 122356667777776654 55566667777776654
No 327
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=30.66 E-value=4.5e+02 Score=26.83 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=46.2
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhh
Q 003227 554 GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (837)
Q Consensus 554 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 627 (837)
+.++.++.+..+.+ .++++.++..|...+.. .. +. -..+++.|..+|.++++.+.+.++.+..++
T Consensus 63 ~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~---~~---el--~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKS-IEVRKFVIGFIEEACKR---DI---EL--LLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHH---CG---GG--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCc-HHHHHHHHHHHHHHHHH---HH---HH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46777777777664 88888888888888763 11 11 246677788888888888888877776654
No 328
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=26.06 E-value=69 Score=28.08 Aligned_cols=74 Identities=16% Similarity=0.025 Sum_probs=53.3
Q ss_pred chHHHHHHHcC-CCCHHHHHHHHHHHHhhcCC--hhhHHHHHHcCCHHH-HHHHHhhcCCCCHHHHHHHHHHHHhccc
Q 003227 600 GALEALVQLTR-SPHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEA-LVVLAQSCSNASPGLQERAAGALWGLSV 673 (837)
Q Consensus 600 ~~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~-L~~ll~~~~~~~~~v~~~A~~~L~~l~~ 673 (837)
.++..|.+-++ ++++.++..|+..|-.+..+ ..-...+.....+.. |+.++....+.+..|+..++..+..++.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 45667777776 47888999999888888776 333555666667776 7777743123457899999999988874
No 329
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=22.91 E-value=23 Score=29.99 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=21.3
Q ss_pred CCCEeeccCCCCCCHHHHHHHHhcCCCccEEEeccCCC
Q 003227 228 SVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDV 265 (837)
Q Consensus 228 ~L~~L~ls~~~~i~~~~l~~~~~~~~~L~~L~l~~~~i 265 (837)
+|++|+|++|. ++.-. ...+..+++|+.|+|++|..
T Consensus 32 ~l~~L~Ls~N~-l~~l~-~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALP-PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSC-CSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCc-CCccC-hhhhhhccccCEEEecCCCe
Confidence 68888888763 32111 12234567788888877543
No 330
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.62 E-value=51 Score=26.30 Aligned_cols=11 Identities=18% Similarity=0.054 Sum_probs=4.5
Q ss_pred CCCccEEEecc
Q 003227 252 LPKLVGLDVSR 262 (837)
Q Consensus 252 ~~~L~~L~l~~ 262 (837)
|.+|+.+.+.+
T Consensus 42 C~~L~~i~~~~ 52 (100)
T 2lz0_A 42 CTALEKLILTG 52 (100)
T ss_dssp CTTCCCEEECC
T ss_pred cCCccEEEEcC
Confidence 44444444433
No 331
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=20.61 E-value=8.5e+02 Score=28.61 Aligned_cols=183 Identities=11% Similarity=0.024 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHhhccCccchH
Q 003227 430 IRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS----MNRLVAEEAAGGLWNLSVGEEHKG 504 (837)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~ 504 (837)
+..|+++--|.-++++..|-.+|..... -+..+..+ ++.+++.|+. .+.+-.+.|+.+|. ...-.+.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~---~k~~~~~ 206 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLL---IKKIHRK 206 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTT---SHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHh---hhhhhhH
Confidence 4567777778899999999999998776 34444443 5677776644 34444445555444 1100000
Q ss_pred HHHhhCCHHHHHH-HHHhhCCCCHHHHHHHHHHHHHhhcC---C-------------------Cc---hHH---------
Q 003227 505 AIADAGGVKALVD-LIFKWSSGGDGVLERAAGALANLAAD---D-------------------KC---SME--------- 549 (837)
Q Consensus 505 ~l~~~g~i~~L~~-lL~~~~~~~~~~~~~a~~~L~~l~~~---~-------------------~~---~~~--------- 549 (837)
...+-..++.+.. +++..+.+.+.++..+-.+...+... + .. ...
T Consensus 207 ~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred HhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 0111112222222 22222445555555444443333320 0 00 000
Q ss_pred --HHh--cCcHHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHH
Q 003227 550 --VAL--AGGVHALVMLARSCKF--EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGA 623 (837)
Q Consensus 550 --l~~--~g~i~~L~~ll~~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~ 623 (837)
..+ .+....++..+.+... -.....++..|.++.... .......++..+++.+.++++.+|..|..+
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~-------d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~ 359 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNL-------ESKPDKRAVFSIISQISTKHPEIIHLVVKS 359 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCS-------SCCCCHHHHHHHHGGGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcC-------CCCCCHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 000 1223333444433333 345556666666666432 222356788889999999999999999987
Q ss_pred HHhh
Q 003227 624 LWNL 627 (837)
Q Consensus 624 L~~L 627 (837)
+..+
T Consensus 360 l~~i 363 (997)
T 1vsy_5 360 LLST 363 (997)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 7544
Done!