Query 003228
Match_columns 837
No_of_seqs 152 out of 228
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 19:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00395 SLH: S-layer homology 98.9 7.2E-10 1.6E-14 86.3 4.3 44 387-441 1-45 (45)
2 PF00395 SLH: S-layer homology 97.7 3.2E-05 6.9E-10 60.4 3.7 44 465-514 1-45 (45)
3 PF08317 Spc7: Spc7 kinetochor 96.3 0.46 1E-05 51.5 19.7 85 609-693 206-290 (325)
4 KOG0018 Structural maintenance 95.8 3.2 6.9E-05 52.0 25.7 246 560-827 231-515 (1141)
5 KOG1029 Endocytic adaptor prot 95.7 2 4.3E-05 52.3 23.0 86 580-667 399-499 (1118)
6 smart00787 Spc7 Spc7 kinetocho 94.9 1.1 2.3E-05 49.2 16.5 122 572-693 163-285 (312)
7 KOG1029 Endocytic adaptor prot 94.7 9.5 0.00021 46.9 24.2 85 565-671 363-450 (1118)
8 PRK00106 hypothetical protein; 94.2 9.2 0.0002 45.1 22.7 11 701-711 255-265 (535)
9 PF12128 DUF3584: Protein of u 94.2 22 0.00049 45.2 33.2 190 554-752 716-919 (1201)
10 TIGR03185 DNA_S_dndD DNA sulfu 94.1 16 0.00035 43.2 32.5 88 569-656 229-316 (650)
11 PF09726 Macoilin: Transmembra 94.0 12 0.00026 45.5 23.5 136 525-663 422-575 (697)
12 COG4942 Membrane-bound metallo 93.8 16 0.00034 42.2 23.0 110 573-689 146-255 (420)
13 PF09726 Macoilin: Transmembra 93.4 15 0.00032 44.7 22.9 89 614-702 462-575 (697)
14 PF12072 DUF3552: Domain of un 93.3 7 0.00015 40.0 17.6 88 532-623 44-131 (201)
15 PRK00106 hypothetical protein; 92.8 15 0.00032 43.4 21.4 37 662-699 179-217 (535)
16 PRK12704 phosphodiesterase; Pr 92.7 17 0.00038 42.5 21.7 39 660-699 162-202 (520)
17 KOG0994 Extracellular matrix g 92.4 43 0.00093 43.2 25.8 94 604-697 1463-1578(1758)
18 KOG0161 Myosin class II heavy 92.0 60 0.0013 43.9 33.2 96 607-707 976-1085(1930)
19 COG1196 Smc Chromosome segrega 91.0 55 0.0012 41.7 25.1 21 342-362 111-131 (1163)
20 TIGR03319 YmdA_YtgF conserved 90.8 35 0.00076 40.0 21.4 96 600-699 99-196 (514)
21 PRK12704 phosphodiesterase; Pr 89.3 45 0.00098 39.2 20.7 56 569-624 81-136 (520)
22 TIGR03319 YmdA_YtgF conserved 88.9 52 0.0011 38.7 20.8 84 569-656 75-168 (514)
23 KOG0161 Myosin class II heavy 88.8 1.1E+02 0.0023 41.7 31.4 88 607-697 1243-1330(1930)
24 PF10186 Atg14: UV radiation r 88.5 33 0.00072 35.5 18.2 32 716-747 178-210 (302)
25 KOG4302 Microtubule-associated 88.4 70 0.0015 39.1 22.4 259 546-832 37-325 (660)
26 PTZ00121 MAEBL; Provisional 87.6 70 0.0015 42.3 21.7 12 535-546 1138-1149(2084)
27 PTZ00121 MAEBL; Provisional 87.6 1.1E+02 0.0024 40.7 23.4 32 510-541 1088-1119(2084)
28 TIGR02169 SMC_prok_A chromosom 87.1 85 0.0018 38.6 35.1 19 343-361 110-128 (1164)
29 TIGR01069 mutS2 MutS2 family p 86.8 6.5 0.00014 47.9 12.5 63 577-639 497-559 (771)
30 PRK11637 AmiB activator; Provi 85.8 67 0.0015 36.2 24.2 43 599-641 174-216 (428)
31 PLN03188 kinesin-12 family pro 85.6 66 0.0014 41.8 20.2 121 540-663 1103-1252(1320)
32 PF05667 DUF812: Protein of un 85.4 93 0.002 37.5 28.4 35 327-361 71-107 (594)
33 KOG0579 Ste20-like serine/thre 85.4 40 0.00086 41.6 17.3 75 558-632 836-947 (1187)
34 PF00769 ERM: Ezrin/radixin/mo 85.2 50 0.0011 35.2 16.7 73 595-667 32-105 (246)
35 TIGR02168 SMC_prok_B chromosom 85.0 1E+02 0.0022 37.6 33.0 13 799-811 967-979 (1179)
36 KOG0995 Centromere-associated 84.5 1E+02 0.0022 37.2 30.6 65 558-622 289-370 (581)
37 KOG3850 Predicted membrane pro 83.6 64 0.0014 37.4 17.2 57 520-579 259-315 (455)
38 KOG0977 Nuclear envelope prote 83.6 1.1E+02 0.0024 36.8 19.9 28 639-666 203-234 (546)
39 TIGR00606 rad50 rad50. This fa 83.2 1.6E+02 0.0034 38.3 30.2 40 659-698 827-866 (1311)
40 PF05701 WEMBL: Weak chloropla 82.3 1.1E+02 0.0024 35.9 22.6 114 547-660 248-364 (522)
41 KOG2685 Cystoskeletal protein 82.3 65 0.0014 37.4 16.8 126 519-656 42-194 (421)
42 PF00038 Filament: Intermediat 82.3 74 0.0016 33.9 19.2 119 549-673 181-305 (312)
43 PF10186 Atg14: UV radiation r 81.7 69 0.0015 33.2 17.4 9 686-694 145-153 (302)
44 KOG0933 Structural maintenance 80.1 1.9E+02 0.0041 37.3 31.1 71 730-800 960-1036(1174)
45 COG1579 Zn-ribbon protein, pos 80.1 94 0.002 33.7 17.9 60 614-673 91-150 (239)
46 TIGR00634 recN DNA repair prot 79.7 92 0.002 36.6 17.5 148 523-674 211-373 (563)
47 KOG0612 Rho-associated, coiled 79.5 2.1E+02 0.0046 37.5 22.2 105 560-667 498-615 (1317)
48 PF04156 IncA: IncA protein; 78.3 75 0.0016 31.6 14.9 29 562-590 94-122 (191)
49 PF09738 DUF2051: Double stran 78.2 46 0.00099 36.9 13.7 80 643-730 122-201 (302)
50 PTZ00266 NIMA-related protein 77.9 30 0.00066 43.9 13.7 38 501-539 409-446 (1021)
51 PRK04863 mukB cell division pr 77.9 2.2E+02 0.0049 37.9 21.6 15 348-362 146-160 (1486)
52 TIGR02168 SMC_prok_B chromosom 77.9 1.8E+02 0.0039 35.7 35.3 6 435-440 119-124 (1179)
53 PRK02224 chromosome segregatio 77.5 1.8E+02 0.0039 35.5 31.3 12 819-830 468-479 (880)
54 KOG4673 Transcription factor T 76.6 2.1E+02 0.0045 35.7 28.7 71 565-639 390-469 (961)
55 PF08317 Spc7: Spc7 kinetochor 76.1 1.3E+02 0.0028 33.1 16.9 106 546-656 130-246 (325)
56 PRK00409 recombination and DNA 75.8 21 0.00047 43.7 11.5 59 577-635 502-560 (782)
57 TIGR01069 mutS2 MutS2 family p 74.1 66 0.0014 39.6 14.9 47 582-628 530-577 (771)
58 PRK11637 AmiB activator; Provi 73.8 1.6E+02 0.0036 33.2 26.2 11 526-536 45-55 (428)
59 PF10473 CENP-F_leu_zip: Leuci 73.7 1E+02 0.0022 30.9 14.8 14 637-650 80-93 (140)
60 PRK09039 hypothetical protein; 73.6 1.6E+02 0.0034 33.0 20.9 50 625-674 122-171 (343)
61 PF09730 BicD: Microtubule-ass 72.9 1.9E+02 0.0041 35.9 18.0 113 570-682 34-149 (717)
62 PRK12705 hypothetical protein; 71.7 2.2E+02 0.0048 33.9 20.1 14 700-713 227-240 (508)
63 PF10168 Nup88: Nuclear pore c 71.6 1.1E+02 0.0023 37.7 15.8 32 510-546 534-566 (717)
64 PF05565 Sipho_Gp157: Siphovir 71.3 54 0.0012 32.8 11.2 79 614-699 3-81 (162)
65 KOG0996 Structural maintenance 71.0 3.4E+02 0.0073 35.7 28.5 59 643-701 436-494 (1293)
66 COG1196 Smc Chromosome segrega 70.1 3.3E+02 0.007 35.1 34.2 17 428-444 112-128 (1163)
67 KOG0018 Structural maintenance 69.9 1.7E+02 0.0036 37.9 16.8 84 614-699 418-501 (1141)
68 KOG0976 Rho/Rac1-interacting s 69.1 3.3E+02 0.0071 34.7 26.7 232 571-808 352-632 (1265)
69 PF10146 zf-C4H2: Zinc finger- 68.3 1.2E+02 0.0026 32.6 13.5 47 565-612 3-49 (230)
70 PF09731 Mitofilin: Mitochondr 68.3 2.4E+02 0.0053 33.0 19.4 81 578-659 342-424 (582)
71 PRK10361 DNA recombination pro 67.4 2.7E+02 0.0058 33.1 20.0 50 766-816 170-222 (475)
72 PF05957 DUF883: Bacterial pro 66.8 30 0.00066 31.3 7.7 46 738-783 8-53 (94)
73 PRK12705 hypothetical protein; 66.6 1.9E+02 0.0041 34.5 15.8 61 621-686 100-160 (508)
74 PTZ00266 NIMA-related protein 66.0 83 0.0018 40.2 13.6 16 733-748 663-678 (1021)
75 PF03962 Mnd1: Mnd1 family; I 65.2 77 0.0017 32.7 11.1 81 581-679 87-167 (188)
76 PRK03918 chromosome segregatio 64.9 3.3E+02 0.0071 33.2 31.1 36 622-657 306-341 (880)
77 COG4372 Uncharacterized protei 64.8 2.9E+02 0.0062 32.5 20.3 82 554-640 80-161 (499)
78 PRK10884 SH3 domain-containing 64.6 70 0.0015 33.6 10.8 24 569-592 92-115 (206)
79 PF10267 Tmemb_cc2: Predicted 64.5 2.8E+02 0.006 32.2 16.3 55 523-580 214-268 (395)
80 KOG0977 Nuclear envelope prote 64.3 1.7E+02 0.0037 35.2 15.0 93 555-654 84-176 (546)
81 PF14643 DUF4455: Domain of un 64.2 2.8E+02 0.0061 32.2 23.3 272 560-835 11-321 (473)
82 PF14362 DUF4407: Domain of un 63.5 2.2E+02 0.0047 30.7 16.9 32 560-591 132-163 (301)
83 PRK09039 hypothetical protein; 63.4 2.5E+02 0.0055 31.4 19.0 19 522-541 47-65 (343)
84 TIGR00634 recN DNA repair prot 62.4 3.2E+02 0.0069 32.2 17.6 28 562-589 211-238 (563)
85 PF04111 APG6: Autophagy prote 61.5 66 0.0014 35.5 10.5 30 584-613 53-82 (314)
86 PF12072 DUF3552: Domain of un 61.4 2E+02 0.0044 29.6 20.8 57 602-658 89-145 (201)
87 PF10211 Ax_dynein_light: Axon 61.0 2.1E+02 0.0045 29.6 14.9 18 545-562 81-98 (189)
88 PF10498 IFT57: Intra-flagella 60.6 2.2E+02 0.0049 32.3 14.6 63 531-601 196-258 (359)
89 KOG1899 LAR transmembrane tyro 60.2 2.7E+02 0.0059 34.4 15.6 12 524-535 107-118 (861)
90 KOG4661 Hsp27-ERE-TATA-binding 59.6 40 0.00086 40.7 8.8 35 603-641 654-688 (940)
91 PRK11281 hypothetical protein; 57.5 5.6E+02 0.012 33.5 23.3 27 674-700 229-255 (1113)
92 KOG4286 Dystrophin-like protei 57.2 5.1E+02 0.011 32.9 20.1 188 569-792 91-293 (966)
93 KOG2391 Vacuolar sorting prote 57.1 38 0.00083 38.4 7.8 42 587-628 217-258 (365)
94 PF05262 Borrelia_P83: Borreli 55.7 4.3E+02 0.0093 31.6 17.6 37 395-442 75-111 (489)
95 KOG0976 Rho/Rac1-interacting s 55.0 5.7E+02 0.012 32.8 26.1 110 555-668 273-396 (1265)
96 PHA02562 46 endonuclease subun 54.9 3.8E+02 0.0083 30.8 26.4 11 689-699 272-282 (562)
97 smart00502 BBC B-Box C-termina 54.7 1.6E+02 0.0035 26.3 10.8 80 731-810 13-92 (127)
98 PF02601 Exonuc_VII_L: Exonucl 54.7 3.1E+02 0.0067 29.6 17.2 32 554-585 156-187 (319)
99 TIGR02680 conserved hypothetic 54.3 6.5E+02 0.014 33.3 29.7 14 346-359 139-152 (1353)
100 PF07464 ApoLp-III: Apolipopho 53.9 81 0.0018 32.0 8.8 102 731-832 37-145 (155)
101 PRK03918 chromosome segregatio 53.8 4.9E+02 0.011 31.7 35.7 18 572-589 202-219 (880)
102 TIGR02169 SMC_prok_A chromosom 53.1 5.4E+02 0.012 32.0 36.7 16 428-443 110-125 (1164)
103 KOG4809 Rab6 GTPase-interactin 52.5 4.9E+02 0.011 31.9 15.8 142 547-696 420-567 (654)
104 PRK02292 V-type ATP synthase s 52.5 2.6E+02 0.0056 28.1 15.4 52 593-649 61-112 (188)
105 KOG1103 Predicted coiled-coil 52.2 4.4E+02 0.0096 30.7 16.8 84 513-602 105-192 (561)
106 PF10168 Nup88: Nuclear pore c 52.1 5.6E+02 0.012 31.9 17.9 36 616-652 611-647 (717)
107 PHA02562 46 endonuclease subun 51.9 4.2E+02 0.0092 30.4 24.8 48 616-663 306-353 (562)
108 COG1579 Zn-ribbon protein, pos 51.2 3.6E+02 0.0078 29.4 22.1 66 600-672 87-156 (239)
109 KOG4691 Uncharacterized conser 50.6 1.6E+02 0.0035 31.5 10.6 44 525-573 81-131 (227)
110 KOG0995 Centromere-associated 50.3 5.6E+02 0.012 31.4 32.0 127 575-708 274-400 (581)
111 TIGR03185 DNA_S_dndD DNA sulfu 50.1 5.3E+02 0.011 31.0 27.3 16 549-564 183-198 (650)
112 PF15642 Tox-ODYAM1: Toxin in 49.7 1E+02 0.0023 34.4 9.5 84 541-630 81-166 (385)
113 PRK06569 F0F1 ATP synthase sub 49.7 1.4E+02 0.003 30.5 9.8 50 574-625 66-116 (155)
114 KOG2129 Uncharacterized conser 49.6 52 0.0011 38.4 7.5 64 651-733 183-246 (552)
115 PF07246 Phlebovirus_NSM: Phle 49.5 1.8E+02 0.0038 32.2 11.1 39 654-692 198-236 (264)
116 KOG0996 Structural maintenance 49.4 7.7E+02 0.017 32.7 30.2 80 611-693 453-532 (1293)
117 TIGR01843 type_I_hlyD type I s 49.1 3.9E+02 0.0084 29.1 20.7 26 639-664 202-227 (423)
118 TIGR03545 conserved hypothetic 48.7 1E+02 0.0022 36.8 10.0 52 601-652 208-259 (555)
119 PRK00247 putative inner membra 48.0 1.6E+02 0.0035 34.4 11.1 59 641-699 321-381 (429)
120 KOG0979 Structural maintenance 47.7 7.7E+02 0.017 32.2 19.1 143 524-669 177-333 (1072)
121 cd07671 F-BAR_PSTPIP1 The F-BA 47.6 3.2E+02 0.0068 29.3 12.5 96 595-701 22-118 (242)
122 PF00521 DNA_topoisoIV: DNA gy 47.2 4.9E+02 0.011 29.9 14.7 50 623-679 375-424 (426)
123 COG2433 Uncharacterized conser 47.0 2.1E+02 0.0046 35.0 12.0 33 635-667 476-508 (652)
124 TIGR03545 conserved hypothetic 47.0 2.2E+02 0.0047 34.2 12.2 61 611-671 190-250 (555)
125 KOG0241 Kinesin-like protein [ 46.6 1.5E+02 0.0033 38.2 11.0 77 613-709 365-445 (1714)
126 cd07672 F-BAR_PSTPIP2 The F-BA 45.6 4.1E+02 0.0089 28.4 13.0 94 595-701 22-119 (240)
127 KOG0982 Centrosomal protein Nu 45.5 6E+02 0.013 30.3 18.7 19 506-524 245-263 (502)
128 PRK04863 mukB cell division pr 45.1 9.5E+02 0.021 32.5 27.4 55 637-695 373-427 (1486)
129 PF10174 Cast: RIM-binding pro 45.0 7.5E+02 0.016 31.3 23.6 245 534-786 11-298 (775)
130 PRK10361 DNA recombination pro 44.6 6.2E+02 0.013 30.2 23.8 10 689-698 121-130 (475)
131 KOG2129 Uncharacterized conser 44.4 6.2E+02 0.013 30.2 15.3 61 604-664 259-319 (552)
132 PF01442 Apolipoprotein: Apoli 44.0 2.9E+02 0.0063 26.2 20.3 8 818-825 187-194 (202)
133 PF02841 GBP_C: Guanylate-bind 43.7 3.4E+02 0.0074 29.4 12.2 10 353-362 39-48 (297)
134 PF14992 TMCO5: TMCO5 family 42.4 4.3E+02 0.0093 29.6 12.7 92 586-677 54-153 (280)
135 PF01991 vATP-synt_E: ATP synt 40.9 3.7E+02 0.0079 26.5 14.9 80 549-632 13-92 (198)
136 KOG0979 Structural maintenance 40.9 9.6E+02 0.021 31.4 24.1 49 583-631 673-721 (1072)
137 PF12128 DUF3584: Protein of u 40.7 9.6E+02 0.021 31.3 35.7 17 430-446 218-234 (1201)
138 PF03962 Mnd1: Mnd1 family; I 40.6 4.2E+02 0.0092 27.4 11.8 48 645-699 108-155 (188)
139 PF05911 DUF869: Plant protein 40.4 8.6E+02 0.019 30.7 18.1 22 731-752 254-275 (769)
140 PF05262 Borrelia_P83: Borreli 40.3 7.2E+02 0.016 29.8 17.3 25 467-491 119-143 (489)
141 PF07352 Phage_Mu_Gam: Bacteri 40.1 1.6E+02 0.0034 29.0 8.3 98 643-747 6-103 (149)
142 PRK04778 septation ring format 39.6 7.3E+02 0.016 29.6 32.0 109 548-657 282-400 (569)
143 KOG2010 Double stranded RNA bi 39.5 3E+02 0.0065 31.7 11.1 77 629-712 139-219 (405)
144 KOG4403 Cell surface glycoprot 39.3 7.5E+02 0.016 29.7 15.4 35 659-693 341-375 (575)
145 PF15290 Syntaphilin: Golgi-lo 39.2 1.1E+02 0.0024 34.2 7.7 62 628-696 63-124 (305)
146 TIGR02231 conserved hypothetic 39.1 1.9E+02 0.0042 33.5 10.1 39 642-680 129-167 (525)
147 KOG2751 Beclin-like protein [S 38.1 6.5E+02 0.014 29.9 13.7 24 504-527 104-127 (447)
148 PF07926 TPR_MLP1_2: TPR/MLP1/ 38.0 3.8E+02 0.0083 25.9 17.4 80 579-658 40-119 (132)
149 KOG0249 LAR-interacting protei 37.2 9.8E+02 0.021 30.4 15.6 56 616-671 195-250 (916)
150 TIGR00606 rad50 rad50. This fa 37.2 1.1E+03 0.024 31.0 34.8 24 607-630 794-817 (1311)
151 KOG0243 Kinesin-like protein [ 37.1 1.1E+03 0.024 30.9 26.1 23 754-776 625-647 (1041)
152 PF10473 CENP-F_leu_zip: Leuci 35.8 4.8E+02 0.01 26.4 16.8 95 573-667 20-117 (140)
153 KOG0288 WD40 repeat protein Ti 35.6 8.3E+02 0.018 29.1 14.4 89 522-615 28-117 (459)
154 KOG1854 Mitochondrial inner me 35.0 9.2E+02 0.02 30.0 14.8 29 506-534 309-338 (657)
155 COG2825 HlpA Outer membrane pr 34.8 4E+02 0.0088 27.3 10.5 28 684-711 118-149 (170)
156 PF02841 GBP_C: Guanylate-bind 34.6 5.5E+02 0.012 27.9 12.1 14 349-362 4-17 (297)
157 PRK10404 hypothetical protein; 34.5 1.9E+02 0.0042 27.4 7.6 58 726-783 3-60 (101)
158 PF10481 CENP-F_N: Cenp-F N-te 34.4 4.8E+02 0.01 29.5 11.5 65 605-669 63-131 (307)
159 PF09537 DUF2383: Domain of un 34.4 1.6E+02 0.0034 26.9 6.9 98 731-836 7-106 (111)
160 KOG1772 Vacuolar H+-ATPase V1 34.3 3.9E+02 0.0085 26.3 9.6 51 579-631 37-87 (108)
161 KOG0239 Kinesin (KAR3 subfamil 34.0 1E+03 0.022 29.6 18.2 69 622-693 244-312 (670)
162 KOG4429 Uncharacterized conser 33.9 6.1E+02 0.013 29.1 12.3 26 559-584 50-81 (421)
163 PF05701 WEMBL: Weak chloropla 33.8 8.7E+02 0.019 28.8 32.5 157 508-675 157-330 (522)
164 PF10146 zf-C4H2: Zinc finger- 33.8 6.4E+02 0.014 27.2 14.9 89 592-698 12-100 (230)
165 PF08647 BRE1: BRE1 E3 ubiquit 33.7 3.9E+02 0.0085 24.8 12.7 45 559-603 34-80 (96)
166 PRK02224 chromosome segregatio 33.7 9.9E+02 0.021 29.4 35.5 6 529-534 385-390 (880)
167 PLN03229 acetyl-coenzyme A car 33.7 8E+02 0.017 31.0 14.3 20 639-658 648-667 (762)
168 PF13870 DUF4201: Domain of un 33.6 5E+02 0.011 26.0 11.5 48 579-626 44-91 (177)
169 PF08826 DMPK_coil: DMPK coile 33.5 3.4E+02 0.0074 24.0 8.8 55 533-591 6-60 (61)
170 PLN03188 kinesin-12 family pro 33.2 1.4E+03 0.029 30.9 28.7 99 644-775 1069-1169(1320)
171 PF09731 Mitofilin: Mitochondr 33.2 8.7E+02 0.019 28.6 23.4 34 738-771 469-508 (582)
172 COG4575 ElaB Uncharacterized c 32.9 1.8E+02 0.004 28.3 7.2 63 760-822 11-73 (104)
173 PRK10884 SH3 domain-containing 32.7 2.5E+02 0.0053 29.7 8.8 13 580-592 96-108 (206)
174 COG2433 Uncharacterized conser 32.6 6.5E+02 0.014 31.2 13.0 19 343-361 268-286 (652)
175 PF08614 ATG16: Autophagy prot 32.5 3.1E+02 0.0068 28.0 9.3 18 669-686 155-172 (194)
176 cd00179 SynN Syntaxin N-termin 31.8 4.5E+02 0.0099 24.9 12.1 97 729-829 10-120 (151)
177 KOG2264 Exostosin EXT1L [Signa 31.6 2.3E+02 0.0049 34.8 9.1 27 640-666 114-140 (907)
178 PF00015 MCPsignal: Methyl-acc 31.6 5E+02 0.011 25.4 10.4 101 729-836 111-211 (213)
179 TIGR03007 pepcterm_ChnLen poly 31.5 8.4E+02 0.018 27.9 22.0 38 614-651 256-293 (498)
180 PF06428 Sec2p: GDP/GTP exchan 31.4 1.2E+02 0.0026 28.9 5.7 60 564-623 2-65 (100)
181 PF14362 DUF4407: Domain of un 31.4 6.9E+02 0.015 26.9 14.5 18 654-671 196-213 (301)
182 KOG2391 Vacuolar sorting prote 31.0 1.6E+02 0.0036 33.7 7.6 11 669-679 268-278 (365)
183 PF00816 Histone_HNS: H-NS his 30.7 49 0.0011 29.9 3.0 53 677-729 12-81 (93)
184 KOG2412 Nuclear-export-signal 30.6 1.1E+03 0.024 29.0 15.8 70 606-676 184-256 (591)
185 PF04576 Zein-binding: Zein-bi 30.5 1.9E+02 0.0041 27.7 6.8 82 570-664 6-94 (94)
186 PF04094 DUF390: Protein of un 30.4 4.4E+02 0.0095 33.2 11.3 78 599-686 393-485 (828)
187 PF12777 MT: Microtubule-bindi 30.4 3.6E+02 0.0078 29.9 10.1 55 608-662 25-79 (344)
188 PF10191 COG7: Golgi complex c 30.4 3.4E+02 0.0074 33.6 10.8 114 710-829 4-125 (766)
189 KOG1103 Predicted coiled-coil 30.1 2.8E+02 0.006 32.3 9.1 50 547-596 209-264 (561)
190 PF06637 PV-1: PV-1 protein (P 30.0 7.4E+02 0.016 29.2 12.4 67 601-671 321-387 (442)
191 PF00038 Filament: Intermediat 29.8 7.2E+02 0.016 26.6 24.8 51 558-612 27-78 (312)
192 COG4942 Membrane-bound metallo 29.6 1E+03 0.022 28.2 24.1 61 625-685 170-244 (420)
193 PRK15396 murein lipoprotein; P 29.1 2.1E+02 0.0045 26.4 6.6 44 641-688 26-69 (78)
194 PF05335 DUF745: Protein of un 29.0 7E+02 0.015 26.3 12.9 93 605-697 60-152 (188)
195 KOG1265 Phospholipase C [Lipid 28.9 5.9E+02 0.013 33.0 12.1 42 563-604 1114-1155(1189)
196 PF00210 Ferritin: Ferritin-li 28.8 4.4E+02 0.0095 23.8 10.4 130 642-781 1-140 (142)
197 smart00787 Spc7 Spc7 kinetocho 28.7 8.7E+02 0.019 27.2 16.8 121 546-671 125-249 (312)
198 KOG4661 Hsp27-ERE-TATA-binding 28.5 9E+02 0.019 30.0 13.1 28 509-536 597-624 (940)
199 PF04728 LPP: Lipoprotein leuc 28.0 2.8E+02 0.006 24.4 6.8 44 641-688 4-47 (56)
200 KOG0163 Myosin class VI heavy 27.8 1.3E+03 0.029 29.7 14.6 60 574-638 900-959 (1259)
201 cd00187 TOP4c DNA Topoisomeras 27.8 9.3E+02 0.02 28.3 13.1 49 624-673 390-438 (445)
202 COG4768 Uncharacterized protei 27.5 5.1E+02 0.011 26.5 9.5 43 726-769 43-85 (139)
203 PF06637 PV-1: PV-1 protein (P 27.5 7.5E+02 0.016 29.2 11.9 44 574-617 321-364 (442)
204 KOG0999 Microtubule-associated 27.3 1.3E+03 0.028 28.7 22.5 78 570-650 107-190 (772)
205 KOG3540 Beta amyloid precursor 27.2 6.3E+02 0.014 30.7 11.5 112 534-676 275-410 (615)
206 PRK10404 hypothetical protein; 27.0 5.6E+02 0.012 24.4 10.5 49 738-786 8-56 (101)
207 cd07649 F-BAR_GAS7 The F-BAR ( 27.0 8E+02 0.017 26.2 19.9 41 531-572 65-105 (233)
208 KOG4010 Coiled-coil protein TP 26.6 2.1E+02 0.0045 30.6 6.9 59 504-562 26-98 (208)
209 TIGR00293 prefoldin, archaeal 26.3 5.5E+02 0.012 24.1 9.8 26 721-746 71-96 (126)
210 PF11932 DUF3450: Protein of u 26.1 8E+02 0.017 25.9 16.0 114 537-651 24-142 (251)
211 PRK03963 V-type ATP synthase s 25.9 6.9E+02 0.015 25.2 16.0 67 575-647 45-111 (198)
212 PF13945 NST1: Salt tolerance 25.9 2.4E+02 0.0052 29.8 7.3 69 555-628 105-175 (190)
213 KOG4403 Cell surface glycoprot 25.8 7.1E+02 0.015 29.9 11.5 62 725-789 354-422 (575)
214 PF03148 Tektin: Tektin family 25.8 1E+03 0.022 27.1 23.9 85 713-803 194-278 (384)
215 KOG3612 PHD Zn-finger protein 25.7 6.1E+02 0.013 31.0 11.1 60 554-629 439-499 (588)
216 PF09789 DUF2353: Uncharacteri 25.1 8.6E+02 0.019 27.7 11.7 114 550-664 95-227 (319)
217 KOG0964 Structural maintenance 25.1 1.7E+03 0.037 29.4 26.6 128 531-659 665-804 (1200)
218 PF08703 PLC-beta_C: PLC-beta 24.7 6.5E+02 0.014 26.6 10.1 45 563-607 91-135 (185)
219 KOG1854 Mitochondrial inner me 24.7 1.4E+03 0.031 28.4 14.8 21 726-746 586-606 (657)
220 PF04624 Dec-1: Dec-1 repeat; 24.6 79 0.0017 24.2 2.6 14 674-687 9-22 (27)
221 PRK10807 paraquat-inducible pr 24.3 5.3E+02 0.011 30.9 10.5 78 728-815 413-491 (547)
222 KOG0163 Myosin class VI heavy 24.0 8.2E+02 0.018 31.4 12.0 12 344-355 668-679 (1259)
223 COG4877 Uncharacterized protei 23.9 76 0.0016 28.2 2.8 33 664-696 12-45 (63)
224 PRK09841 cryptic autophosphory 23.8 1.1E+03 0.025 28.8 13.4 20 560-579 271-290 (726)
225 cd02684 MIT_2 MIT: domain cont 23.8 3.8E+02 0.0083 23.9 7.2 40 733-774 2-41 (75)
226 PRK06800 fliH flagellar assemb 23.7 6E+02 0.013 27.4 9.6 44 647-700 55-98 (228)
227 PF03961 DUF342: Protein of un 23.6 5.9E+02 0.013 29.3 10.5 37 592-628 372-408 (451)
228 PRK10132 hypothetical protein; 23.3 4.2E+02 0.009 25.6 7.8 45 738-782 22-66 (108)
229 PRK13182 racA polar chromosome 23.2 4.9E+02 0.011 26.9 8.8 86 554-642 40-148 (175)
230 cd08779 Death_PIDD Death Domai 23.2 96 0.0021 28.2 3.4 33 665-697 41-76 (86)
231 cd07651 F-BAR_PombeCdc15_like 23.1 8.7E+02 0.019 25.3 19.8 140 533-696 67-206 (236)
232 TIGR02680 conserved hypothetic 22.9 1.9E+03 0.042 29.2 33.0 13 431-443 139-151 (1353)
233 PF12126 DUF3583: Protein of u 22.7 1.2E+03 0.026 26.7 12.1 50 619-674 60-121 (324)
234 PRK14011 prefoldin subunit alp 22.7 8E+02 0.017 24.8 12.5 127 640-781 3-133 (144)
235 PF07780 Spb1_C: Spb1 C-termin 22.2 1.2E+02 0.0027 32.4 4.5 38 461-516 64-101 (215)
236 PTZ00491 major vault protein; 22.0 9E+02 0.019 31.0 12.1 28 581-609 749-776 (850)
237 TIGR00996 Mtu_fam_mce virulenc 21.9 6.3E+02 0.014 26.8 9.7 23 759-781 190-212 (291)
238 PF03999 MAP65_ASE1: Microtubu 21.8 1.3E+03 0.027 28.0 13.1 91 519-614 262-362 (619)
239 PF12325 TMF_TATA_bd: TATA ele 21.8 7.7E+02 0.017 24.2 12.0 35 594-628 50-84 (120)
240 cd07653 F-BAR_CIP4-like The F- 21.4 9.3E+02 0.02 25.0 17.0 27 555-581 22-48 (251)
241 PF03938 OmpH: Outer membrane 21.2 7.4E+02 0.016 23.8 13.4 50 614-665 52-101 (158)
242 smart00434 TOP4c DNA Topoisome 21.1 7E+02 0.015 29.2 10.5 45 622-667 398-442 (445)
243 PRK10930 FtsH protease regulat 21.0 7E+02 0.015 29.1 10.4 11 547-557 295-305 (419)
244 TIGR01843 type_I_hlyD type I s 20.9 1.1E+03 0.024 25.7 21.5 11 526-536 86-96 (423)
245 KOG0250 DNA repair protein RAD 20.7 2E+03 0.044 28.7 24.2 180 521-700 255-443 (1074)
246 PHA02940 hypothetical protein; 20.6 5E+02 0.011 29.1 8.6 88 614-704 9-96 (315)
247 PTZ00421 coronin; Provisional 20.4 1.6E+02 0.0034 34.5 5.2 33 639-672 452-484 (493)
248 TIGR01061 parC_Gpos DNA topois 20.4 1.5E+03 0.033 28.3 13.6 57 622-679 410-466 (738)
249 COG1340 Uncharacterized archae 20.3 1.3E+03 0.028 26.2 21.9 124 519-663 105-237 (294)
250 PF05917 DUF874: Helicobacter 20.2 6.1E+02 0.013 29.0 9.3 45 626-670 169-213 (398)
251 PRK00957 methionine synthase; 20.2 1.1E+02 0.0024 32.7 3.8 52 674-725 21-72 (305)
252 PF14523 Syntaxin_2: Syntaxin- 20.0 6.4E+02 0.014 22.6 10.9 77 737-813 8-91 (102)
No 1
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=98.95 E-value=7.2e-10 Score=86.33 Aligned_cols=44 Identities=27% Similarity=0.421 Sum_probs=31.5
Q ss_pred CccCCCCCCCCh-HHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHH
Q 003228 387 AFDDITPEDPDF-SSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLV 441 (837)
Q Consensus 387 AF~DV~~ddPyf-~yIQAAAEAGIIsGkLSG~~~~s~dDG~~tFrPDsPITRQELA 441 (837)
.|+||+..+|+| .+|+.+++.|||.|+. +++|+|+++|||+|||
T Consensus 1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~~-----------~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYAEAIQWLYQLGIISGYS-----------DGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTTHHHHHHHHTTSS---T-----------TS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHcCCcccCC-----------CCeECCCCCcCHHHhC
Confidence 599999999955 9999999999999973 3379999999999986
No 2
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=97.73 E-value=3.2e-05 Score=60.43 Aligned_cols=44 Identities=34% Similarity=0.392 Sum_probs=27.5
Q ss_pred CcccccCcCc-chHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHH
Q 003228 465 GFIDIDKINP-DAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAA 514 (837)
Q Consensus 465 gF~DadkIsp-wA~~AVaadL~aGd~GII~~vfG~tg~FqPnkPVTRAEAA 514 (837)
.|.|...+++ |+ .+|...+.. |||.+. ..+.|+|++++||+|+|
T Consensus 1 ~F~Dv~~~~~~~a-~~i~~~~~~---gi~~G~--~~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYA-EAIQWLYQL---GIISGY--SDGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTT-HHHHHHHHT---TSS-----TTS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHH-HHHHHHHHc---CCcccC--CCCeECCCCCcCHHHhC
Confidence 3899999988 77 888766654 465432 24579999999999997
No 3
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.26 E-value=0.46 Score=51.52 Aligned_cols=85 Identities=28% Similarity=0.404 Sum_probs=66.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003228 609 SEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 688 (837)
Q Consensus 609 ~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A 688 (837)
|-.+.|..||.|+.++-..|...|-++..=+..++.+..+++.-.+...+++.++..=.+-+.--|.|-..|..+-+++-
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKV 285 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 77788888888888888888877777777777777777777666666666666665545555567899999999999999
Q ss_pred HHHHH
Q 003228 689 KALEG 693 (837)
Q Consensus 689 ~vLEe 693 (837)
+.|+.
T Consensus 286 ~~Le~ 290 (325)
T PF08317_consen 286 DALEK 290 (325)
T ss_pred HHHHH
Confidence 99997
No 4
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=3.2 Score=51.96 Aligned_cols=246 Identities=20% Similarity=0.243 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHH
Q 003228 560 SFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK 639 (837)
Q Consensus 560 ~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek 639 (837)
-..++++....-+-.++.-....-.+++..+ ++....+++-+.++.. +......|-+ ..+|..=++.+...+
T Consensus 231 k~~~els~~~~ei~~~~~~~d~~e~ei~~~k----~e~~ki~re~~~~Dk~---i~~ke~~l~e-rp~li~~ke~~~~~k 302 (1141)
T KOG0018|consen 231 KANDELSRLNAEIPKLKERMDKKEREIRVRK----KERGKIRRELQKVDKK---ISEKEEKLAE-RPELIKVKENASHLK 302 (1141)
T ss_pred hhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHhh-hhHHhhcchhhccch
Confidence 3444555544444444444333333333333 4445556666666543 2333333444 456778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCC------
Q 003228 640 ERINMLRKEAENENQEIARLQYELEVER---KALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKD------ 710 (837)
Q Consensus 640 ~~l~kL~~~~e~~~q~i~~~k~~LE~Ek---kAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~------ 710 (837)
.+|.+..++++.........+.+++..+ +|+.-++.-.|+|-++.+. .| |-++...++
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q----------~r---g~~lnl~d~~~~ey~ 369 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ----------ER---GSELNLKDDQVEEYE 369 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hc---cccCCcchHHHHHHH
Confidence 9999999999999999999998877654 4555555555555433221 11 111111111
Q ss_pred -ccccccc-------cchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003228 711 -LREESDA-------AVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASM 782 (837)
Q Consensus 711 -~~~~~~~-------~~~w~~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~ 782 (837)
|.+++.. ..-----+++-.++.+.+|-..|-.+++.+...| .++..-+..+..+|-++...+.+.......
T Consensus 370 rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sv-er~~~~~~~L~~~i~s~~~~~~e~~~d~~~ 448 (1141)
T KOG0018|consen 370 RLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESV-ERLDKRRNKLAAKITSLSRSYEELKHDLDS 448 (1141)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 2222221 1111123445566666777777777877777766 344444444555554444443333322221
Q ss_pred H---------------------HHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccch-hhhhhhhhh
Q 003228 783 R---------------------AAELKDATILKAKGSVQELQQSTAEFRSNLTEGAK-RVAGDCREG 827 (837)
Q Consensus 783 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-r~~~~c~~g 827 (837)
- .+.+.|+++-...++-+...+.+.+.=-...-|.+ ||.+.|+--
T Consensus 449 l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt 515 (1141)
T KOG0018|consen 449 LESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPT 515 (1141)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCCccchhhhccccc
Confidence 1 14445555555555555555555555556667777 999999753
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=2 Score=52.32 Aligned_cols=86 Identities=27% Similarity=0.344 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHH
Q 003228 580 EEARQELERLRA---------------EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 644 (837)
Q Consensus 580 eea~~eLe~~r~---------------ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~k 644 (837)
|.|+.|||+.|. .||++-+.++|+|- -.=.+.|.-|...+....++|.--|+.|-.-|..|+.
T Consensus 399 Eaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~--~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~ 476 (1118)
T KOG1029|consen 399 EAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKK--KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEE 476 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHH
Confidence 456667766553 23444444444442 2333456666666777777777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003228 645 LRKEAENENQEIARLQYELEVER 667 (837)
Q Consensus 645 L~~~~e~~~q~i~~~k~~LE~Ek 667 (837)
+.+.++...-+|.+||..|.-=-
T Consensus 477 ~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 477 VTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777777665433
No 6
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.93 E-value=1.1 Score=49.17 Aligned_cols=122 Identities=16% Similarity=0.233 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHH
Q 003228 572 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAI-ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAE 650 (837)
Q Consensus 572 ~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~-e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e 650 (837)
....+.++..++.+|.+....=..+...|.+....| .|--..|..||.++.++.+.+...+-++..=++.++++...++
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444 4667788888888888888887777776666666777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003228 651 NENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 693 (837)
Q Consensus 651 ~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEe 693 (837)
...+...+++.++-.-.+=+-.-|.|-..|+.+=+++-+.|+.
T Consensus 243 ~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 243 DLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 6666666655555444444445689999999999999999987
No 7
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=9.5 Score=46.89 Aligned_cols=85 Identities=29% Similarity=0.350 Sum_probs=53.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHH
Q 003228 565 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 644 (837)
Q Consensus 565 l~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~k 644 (837)
...||++..++||.++. ..|||+.|.|.++ |++-++|+-++.|-+-|. +--|+-|++.
T Consensus 363 qEqErk~qlElekqLer-QReiE~qrEEerk------keie~rEaar~ElEkqRq---------------lewErar~qe 420 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLER-QREIERQREEERK------KEIERREAAREELEKQRQ---------------LEWERARRQE 420 (1118)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 34577777788887755 4467777664333 334444554554444432 2357888888
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 003228 645 LRKEAENENQEIARLQY---ELEVERKALS 671 (837)
Q Consensus 645 L~~~~e~~~q~i~~~k~---~LE~EkkAL~ 671 (837)
|+.+.+.+++.|..++. .|+.|-++|.
T Consensus 421 m~~Qk~reqe~iv~~nak~~ql~~eletLn 450 (1118)
T KOG1029|consen 421 MLNQKNREQEWIVYLNAKKKQLQQELETLN 450 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877543 4566666653
No 8
>PRK00106 hypothetical protein; Provisional
Probab=94.24 E-value=9.2 Score=45.10 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=8.0
Q ss_pred cCcEEEEcCCc
Q 003228 701 QGIKVVVDKDL 711 (837)
Q Consensus 701 ~gikv~vd~~~ 711 (837)
-|+.++||+.-
T Consensus 255 tGvdliiddtp 265 (535)
T PRK00106 255 TGIDVIIDDTP 265 (535)
T ss_pred hCceEEEcCCC
Confidence 38888888654
No 9
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.20 E-value=22 Score=45.23 Aligned_cols=190 Identities=20% Similarity=0.238 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcce
Q 003228 554 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV 633 (837)
Q Consensus 554 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ 633 (837)
+.+.++.|......=..++..+.+..+.+..+.+..+.+-+++...=|+++-.=...-+-|..=-..++..++.....+-
T Consensus 716 ~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 716 RNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45677777777666677777787777777777777777666666666665532221111111111222223333333332
Q ss_pred ehh-HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHh
Q 003228 634 EIS-YEK-------------ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 699 (837)
Q Consensus 634 ei~-~Ek-------------~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~ 699 (837)
.|. |++ .+..+|..++..-.+++.+++..|..-++.+.-.|.=.+.+.+...++..-|++-.++=+
T Consensus 796 ~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~ 875 (1201)
T PF12128_consen 796 EVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLR 875 (1201)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 111 122334444444455555555666666666666666666666666666666666555433
Q ss_pred hcCcEEEEcCCccccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcc
Q 003228 700 RQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS 752 (837)
Q Consensus 700 ~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~ 752 (837)
....++ .++ ...|....-...+.+.+...++++..++.+..+++
T Consensus 876 ~~~~~l---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 919 (1201)
T PF12128_consen 876 DLLEKL---AEL------SEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELK 919 (1201)
T ss_pred HHHhhh---hhc------CCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 111 12233333337788888888888888887777776
No 10
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.08 E-value=16 Score=43.21 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=72.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHH
Q 003228 569 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 648 (837)
Q Consensus 569 r~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~ 648 (837)
..+...++..++++...+++++......-..++.+|..++.++..|..-+.+....+-.++++..=...=..-|+.++..
T Consensus 229 ~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q 308 (650)
T TIGR03185 229 AQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQ 308 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHH
Confidence 34456677777777888888888777788889999999999999999999999999999999988777777888888888
Q ss_pred HHHHHHHH
Q 003228 649 AENENQEI 656 (837)
Q Consensus 649 ~e~~~q~i 656 (837)
++.+++..
T Consensus 309 ~~~e~~~~ 316 (650)
T TIGR03185 309 LQKEEQSQ 316 (650)
T ss_pred HHHHHHHH
Confidence 88776433
No 11
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.97 E-value=12 Score=45.46 Aligned_cols=136 Identities=21% Similarity=0.300 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHH-hHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 003228 525 AVNEELQRIEAESA-AENAVSE-HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLR---AEREVDKIA 599 (837)
Q Consensus 525 ~v~eEL~RlEAE~~-a~~av~~-~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r---~ere~e~~~ 599 (837)
-+..||.||.+|-. +|+.+.+ ++.|-- +. --.+....+|..=|..-+.++.-+..+..-....| ..=|+-+.+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~-l~-~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISS-LT-NNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhh-cc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888843 3443322 111100 00 00123333444444444444444444433333333 233445556
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHHHHHHh----hhcceehhHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 003228 600 LMKERAAIESEMEILSKLRREVEEQLESL----MSNKVEISYEKER---------INMLRKEAENENQEIARLQYEL 663 (837)
Q Consensus 600 llKerAa~e~e~q~L~~Lr~EVde~~q~L----~s~~~ei~~Ek~~---------l~kL~~~~e~~~q~i~~~k~~L 663 (837)
..+-|+.+|.|-....+=|.+-++...+= .+.|. -..|..| +.+|+.|+..+.+.+..+..++
T Consensus 500 E~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~-e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 500 ERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ-ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555544433321 11111 2222222 5566666666666665555544
No 12
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.82 E-value=16 Score=42.18 Aligned_cols=110 Identities=22% Similarity=0.161 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHH
Q 003228 573 DVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENE 652 (837)
Q Consensus 573 ~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~ 652 (837)
...-.+|.+...++.+.-..-.+....|-..|+.|+.|++.|..+..|..++.++|.....| =+..+.+|.++++.+
T Consensus 146 ~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E---~kk~~~~l~~~l~~~ 222 (420)
T COG4942 146 VRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEE---RKKTLAQLNSELSAD 222 (420)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33455677777777777777788888888999999999999999999999999988765432 244556666677666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003228 653 NQEIARLQYELEVERKALSMARAWAEDEAKRAREQAK 689 (837)
Q Consensus 653 ~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~ 689 (837)
++.+..|+ +...+|.-.=+=+|.+|.++||.+.
T Consensus 223 q~~l~eL~----~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 223 QKKLEELR----ANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655444 3334444333334444444444433
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.40 E-value=15 Score=44.70 Aligned_cols=89 Identities=29% Similarity=0.296 Sum_probs=50.2
Q ss_pred HHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q 003228 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA------------------------ 669 (837)
Q Consensus 614 L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkA------------------------ 669 (837)
|..||.|.|++--+|..-.-.--.||+.|+-|.+.+..++..-..+...|..||+|
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e 541 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAE 541 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHH
Confidence 44444444444334443333334455555555555555555555555555555544
Q ss_pred -HHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 003228 670 -LSMARAWAEDEAKRAREQAKALEGARDRWERQG 702 (837)
Q Consensus 670 -L~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~g 702 (837)
+..-|.=.|.|.++-|..-+..||.-+.|+..+
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777777777778888888887765
No 14
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.33 E-value=7 Score=40.02 Aligned_cols=88 Identities=25% Similarity=0.334 Sum_probs=40.7
Q ss_pred HHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 003228 532 RIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEM 611 (837)
Q Consensus 532 RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~ 611 (837)
+.||++.-..+...--+-. ..+++-++.++...|......|+-+..--.-|++....=++....|-+.+..+..++
T Consensus 44 ~~eAe~~~ke~~~eakee~----~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~ 119 (201)
T PF12072_consen 44 EREAEAIKKEAELEAKEEA----QKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555544321111 234445556655555555555555544444444444333333334444444444444
Q ss_pred HHHHHhHHHHHH
Q 003228 612 EILSKLRREVEE 623 (837)
Q Consensus 612 q~L~~Lr~EVde 623 (837)
+.|-.++.+++.
T Consensus 120 ~~l~~~~~e~~~ 131 (201)
T PF12072_consen 120 EELEEREEELEE 131 (201)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 15
>PRK00106 hypothetical protein; Provisional
Probab=92.82 E-value=15 Score=43.45 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHH-HHHHHHHhHHHh
Q 003228 662 ELEVERKALSMARAWAEDEAKR-AREQ-AKALEGARDRWE 699 (837)
Q Consensus 662 ~LE~EkkAL~m~R~W~EdEA~r-~~e~-A~vLEea~~rW~ 699 (837)
+-++..++-.++|.. |+||+. +... -++|-.|-+|..
T Consensus 179 ~~~~~~~~~~~i~~~-e~~a~~~a~~~a~~ii~~aiqr~a 217 (535)
T PRK00106 179 ENKLTHEIATRIREA-EREVKDRSDKMAKDLLAQAMQRLA 217 (535)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666654 334433 2222 356788888865
No 16
>PRK12704 phosphodiesterase; Provisional
Probab=92.72 E-value=17 Score=42.53 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HHHH-HHHHHHHhHHHh
Q 003228 660 QYELEVERKALSMARAWAEDEAKR-AREQ-AKALEGARDRWE 699 (837)
Q Consensus 660 k~~LE~EkkAL~m~R~W~EdEA~r-~~e~-A~vLEea~~rW~ 699 (837)
+-+-++.+++-.|.|.. |+||+. +... -++|-.|-+|..
T Consensus 162 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~a~~i~~~a~qr~a 202 (520)
T PRK12704 162 KVEEEARHEAAVLIKEI-EEEAKEEADKKAKEILAQAIQRCA 202 (520)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445566677777763 444443 2222 346777877743
No 17
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.42 E-value=43 Score=43.23 Aligned_cols=94 Identities=24% Similarity=0.316 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHH----------HHhhhc--ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 604 RAAIESEMEILSKLRREVEEQL----------ESLMSN--KVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (837)
Q Consensus 604 rAa~e~e~q~L~~Lr~EVde~~----------q~L~s~--~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 671 (837)
|-.|+.-+++|.+|-.+|-+.| +.||.+ .+++..+-+.|+.|-.+|...-..|.++-.+|-.=|--+.
T Consensus 1463 ~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1463 RSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHH
Confidence 3457788888999888887654 445443 5677888899999999999888887777666644333222
Q ss_pred ----------HHHHhHHHHHHHHHHHHHHHHHHhHH
Q 003228 672 ----------MARAWAEDEAKRAREQAKALEGARDR 697 (837)
Q Consensus 672 ----------m~R~W~EdEA~r~~e~A~vLEea~~r 697 (837)
-+|+||||.-..+..--.+||+|-+-
T Consensus 1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~A 1578 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEEADVA 1578 (1758)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 24677777777776666777776543
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.97 E-value=60 Score=43.91 Aligned_cols=96 Identities=23% Similarity=0.338 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Q 003228 607 IESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA--------------LSM 672 (837)
Q Consensus 607 ~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkA--------------L~m 672 (837)
++....-|.+.|.+++++++.|.+. +..|++.+..|.+....--+.+.++...||-|++. |..
T Consensus 976 ~~e~~~kL~kekk~lEe~~~~l~~~---l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~ 1052 (1930)
T KOG0161|consen 976 LDENISKLSKEKKELEERIRELQDD---LQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKD 1052 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666665555543 44455555555444444444455555555555443 344
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEE
Q 003228 673 ARAWAEDEAKRAREQAKALEGARDRWERQGIKVVV 707 (837)
Q Consensus 673 ~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~v 707 (837)
++.|+++.-...++-..-|.. ..|+.+.+..-+
T Consensus 1053 ~~e~~~~~~~~~~el~~~l~k--ke~El~~l~~k~ 1085 (1930)
T KOG0161|consen 1053 LQESIEELKKQKEELDNQLKK--KESELSQLQSKL 1085 (1930)
T ss_pred hhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 455655544444444443333 445555444433
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.00 E-value=55 Score=41.66 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=17.2
Q ss_pred CccCCCCCccHHHHHHHHHHh
Q 003228 342 ADVKPGDLCIRREYARWLVSA 362 (837)
Q Consensus 342 gtF~Pn~pITRAEFArwLVRA 362 (837)
.+|-=+..|+..++..+|..+
T Consensus 111 ~Y~INg~~~~~~dI~~l~~~~ 131 (1163)
T COG1196 111 EYYINGEKVRLKDIQDLLADS 131 (1163)
T ss_pred EEEECCcEeeHHHHHHHHHhc
Confidence 467788999999998888665
No 20
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.82 E-value=35 Score=40.03 Aligned_cols=96 Identities=28% Similarity=0.315 Sum_probs=42.5
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003228 600 LMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 679 (837)
Q Consensus 600 llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~Ed 679 (837)
|-+.+..++.+.+.|.....+++++.+.+....-+...+-+++..|. ..+-...+--+-+-++..++-.|.|-.- +
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt---~~eak~~l~~~~~~~~~~~~~~~~~~~~-~ 174 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLT---QEEAKEILLEEVEEEARHEAAKLIKEIE-E 174 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 33344445555555555555555554444332222222222222222 1222222233344455666667776543 3
Q ss_pred HHHH-HHHH-HHHHHHHhHHHh
Q 003228 680 EAKR-AREQ-AKALEGARDRWE 699 (837)
Q Consensus 680 EA~r-~~e~-A~vLEea~~rW~ 699 (837)
||+. +... -++|-.|-+|..
T Consensus 175 ~~~~~a~~~a~~i~~~aiqr~a 196 (514)
T TIGR03319 175 EAKEEADKKAKEILATAIQRYA 196 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3332 2222 356777888743
No 21
>PRK12704 phosphodiesterase; Provisional
Probab=89.26 E-value=45 Score=39.23 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHH
Q 003228 569 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 624 (837)
Q Consensus 569 r~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~ 624 (837)
|.+...-|+.+..-...|++....=++....|-+.+..++.+.+.|..++.+++++
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~ 136 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333333344444444444444444444444433
No 22
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.90 E-value=52 Score=38.70 Aligned_cols=84 Identities=19% Similarity=0.339 Sum_probs=39.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHH-------HHHHhhhcceehhHHHHH
Q 003228 569 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEE-------QLESLMSNKVEISYEKER 641 (837)
Q Consensus 569 r~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde-------~~q~L~s~~~ei~~Ek~~ 641 (837)
+.+...-|+.+..-...|++-...=++....|-+.+..++...+.|-.+..|.++ .|++++. ++.|+-+
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~----lt~~eak 150 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISG----LTQEEAK 150 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHH
Confidence 4444444555544444454444443334444445555555555555555555444 5555543 3344333
Q ss_pred ---HHHHHHHHHHHHHHH
Q 003228 642 ---INMLRKEAENENQEI 656 (837)
Q Consensus 642 ---l~kL~~~~e~~~q~i 656 (837)
|+++..++..+--.+
T Consensus 151 ~~l~~~~~~~~~~~~~~~ 168 (514)
T TIGR03319 151 EILLEEVEEEARHEAAKL 168 (514)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555554443333
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.76 E-value=1.1e+02 Score=41.70 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003228 607 IESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRARE 686 (837)
Q Consensus 607 ~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e 686 (837)
+|.+...|..-=.+++.+...|+..+...+.|-..+.+.+.+.+.+...+++.++.++.+.+=| +.=.++|.|+...
T Consensus 1243 ~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle~e~r~k~~ 1319 (1930)
T KOG0161|consen 1243 LEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLEEETREKSA 1319 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3333333333334455555667888999999999999999999999999999999999886654 8889999999999
Q ss_pred HHHHHHHHhHH
Q 003228 687 QAKALEGARDR 697 (837)
Q Consensus 687 ~A~vLEea~~r 697 (837)
.+..|-.+.+-
T Consensus 1320 l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1320 LENALRQLEHE 1330 (1930)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 24
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.46 E-value=33 Score=35.48 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=15.4
Q ss_pred cccchhhhcccccch-HHHHHhHHHHHHHHHHh
Q 003228 716 DAAVMWVNAGKQFSV-DQTVSRAQSLVDKLKAM 747 (837)
Q Consensus 716 ~~~~~w~~~~~~~~~-~~~~~ra~~l~~k~~~m 747 (837)
..|+.+.|...-... ...|.-|=..+-.|=.|
T Consensus 178 I~~~~lp~~~~~~~~~~~~isaALgyvahlv~l 210 (302)
T PF10186_consen 178 ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSL 210 (302)
T ss_pred ecCcccCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 356666665433332 34555564444444333
No 25
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.39 E-value=70 Score=39.09 Aligned_cols=259 Identities=16% Similarity=0.158 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhHHHHH
Q 003228 546 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALM---KERAAIESEMEILSKLRREVE 622 (837)
Q Consensus 546 ~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~ll---KerAa~e~e~q~L~~Lr~EVd 622 (837)
+..+++++++.+..++..++.........+.+-...+..||..+-...-....-.- |.=- .=++.|.+|+-.++
T Consensus 37 ~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~---tLke~l~~l~~~le 113 (660)
T KOG4302|consen 37 RDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEG---TLKEQLESLKPYLE 113 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCc---cHHHHHHHHHHHHH
Confidence 44567777777777777666666666666666666666666655443211111000 0000 11333444444444
Q ss_pred HHHHHhhhcceehhHHHHHHHHHHHHHHHH---------------HHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHH
Q 003228 623 EQLESLMSNKVEISYEKERINMLRKEAENE---------------NQEIARLQ---YELEVERKALSMARAWAEDEAKRA 684 (837)
Q Consensus 623 e~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~---------------~q~i~~~k---~~LE~EkkAL~m~R~W~EdEA~r~ 684 (837)
+|-......+.++..=...+++|..++-.. .+.+.+++ .+|+-|| +.|-
T Consensus 114 ~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek-------------~~Rl 180 (660)
T KOG4302|consen 114 GLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEK-------------SDRL 180 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHH-------------HHHH
Confidence 444444444433333333333333333322 01111111 1222222 2333
Q ss_pred HHHHHHHHHHhHHHhhcCcEEE-----EcCCccccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHH
Q 003228 685 REQAKALEGARDRWERQGIKVV-----VDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEII 759 (837)
Q Consensus 685 ~e~A~vLEea~~rW~~~gikv~-----vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~ 759 (837)
+.--...++...-|.--|++.- |..+|.+..... ...-.++|+.|-+.++.+|+.+..+- .+.|
T Consensus 181 ekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~-------~~~is~etl~~L~~~v~~l~~~k~qr----~~kl 249 (660)
T KOG4302|consen 181 EKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQ-------SRSISDETLDRLDKMVKKLKEEKKQR----LQKL 249 (660)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcc-------cccCCHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 4444455666777888888654 333333322111 15566889999998888888876543 3346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhh
Q 003228 760 NTIIHKILLFISNLKKWASKASMRA----AELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLT 832 (837)
Q Consensus 760 ~~~~~~i~~~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~ 832 (837)
..+..+|+.|-..|.-=.-+..... .++-.. .+-....|..++.-|.-...-=...-|.|+..||..++-|-
T Consensus 250 ~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~-~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~ 325 (660)
T KOG4302|consen 250 QDLRTKLLELWNLLDTSDEERQRFVHVTESEATEP-NSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEELW 325 (660)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHccccHHHhhcc-ccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6666666666666543222222111 122222 22223344444443333333333445888888888777654
No 26
>PTZ00121 MAEBL; Provisional
Probab=87.65 E-value=70 Score=42.34 Aligned_cols=12 Identities=25% Similarity=0.194 Sum_probs=5.1
Q ss_pred HHHHhHHHHhhh
Q 003228 535 AESAAENAVSEH 546 (837)
Q Consensus 535 AE~~a~~av~~~ 546 (837)
+.+.+++|--++
T Consensus 1138 ~~Rr~EeaRKrE 1149 (2084)
T PTZ00121 1138 DARKAEEARKAE 1149 (2084)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 27
>PTZ00121 MAEBL; Provisional
Probab=87.64 E-value=1.1e+02 Score=40.66 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhHH
Q 003228 510 NAQAAVALAIGEASDAVNEELQRIEAESAAEN 541 (837)
Q Consensus 510 RAEAAAaL~sG~~~e~v~eEL~RlEAE~~a~~ 541 (837)
|+.-|.--..|...++=.+|--|.|+++.+..
T Consensus 1088 ~~~~~~~~~~~~~e~~r~~et~r~ee~r~~ee 1119 (2084)
T PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEE 1119 (2084)
T ss_pred cchhhhHHHhhhHHHhhhhhhhhhHHHHHHHH
Confidence 44444444556666666555555555444433
No 28
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.09 E-value=85 Score=38.59 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=12.1
Q ss_pred ccCCCCCccHHHHHHHHHH
Q 003228 343 DVKPGDLCIRREYARWLVS 361 (837)
Q Consensus 343 tF~Pn~pITRAEFArwLVR 361 (837)
+|--+.+||+.++...|-.
T Consensus 110 ~~~n~~~~~~~~~~~~l~~ 128 (1164)
T TIGR02169 110 YYLNGQRVRLSEIHDFLAA 128 (1164)
T ss_pred EEECCccccHHHHHHHHHH
Confidence 3445667888887666544
No 29
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.75 E-value=6.5 Score=47.86 Aligned_cols=63 Identities=22% Similarity=0.180 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHH
Q 003228 577 KMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK 639 (837)
Q Consensus 577 k~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek 639 (837)
...+.|+.-+...+.+-++-+..|-.+|..++.+++.+.+++.|++++.++|-.+.-++-.++
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~ 559 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666666666777777777777777777776666655554444433
No 30
>PRK11637 AmiB activator; Provisional
Probab=85.82 E-value=67 Score=36.23 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHH
Q 003228 599 ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKER 641 (837)
Q Consensus 599 ~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~ 641 (837)
.|-+.|..++.+++.|..-+.++..++..+...+.++..++..
T Consensus 174 ~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 174 ELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444
No 31
>PLN03188 kinesin-12 family protein; Provisional
Probab=85.63 E-value=66 Score=41.84 Aligned_cols=121 Identities=22% Similarity=0.306 Sum_probs=81.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhh
Q 003228 540 ENAVSEHSALVAEVEKEINESFEKELSMER---EKIDVVEKMAE-------------EARQELERLRAEREVDKIALMKE 603 (837)
Q Consensus 540 ~~av~~~~~l~~~~~~di~~~f~~el~~Er---~~~~~vek~~e-------------ea~~eLe~~r~ere~e~~~llKe 603 (837)
+-|+-+|..|+++- -|++.-+-+=|.+=| +=|.+|-|-+. ..-.||--||.+||||..-|.+|
T Consensus 1103 q~am~ghar~~e~y-a~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~e 1181 (1320)
T PLN03188 1103 QMAMEGHARMLEQY-ADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDE 1181 (1320)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666788888875 566655555444444 34455555443 33479999999999999888777
Q ss_pred hh-----------HHHHHHHHHHHhHHHHHHHHHHhhhcceeh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 003228 604 RA-----------AIESEMEILSKLRREVEEQLESLMSNKVEI-SYEKERINMLRKEAENEN-QEIARLQYEL 663 (837)
Q Consensus 604 rA-----------a~e~e~q~L~~Lr~EVde~~q~L~s~~~ei-~~Ek~~l~kL~~~~e~~~-q~i~~~k~~L 663 (837)
-- ||.+-=+||.+||+= |.--.++-+|... -+|-+++-|...++..|| .+|+-++-.|
T Consensus 1182 nk~l~~qlrdtaeav~aagellvrl~ea--eea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1182 NKSLQAQLRDTAEAVQAAGELLVRLKEA--EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 455566899999863 3344566666543 355666777667777788 7888888777
No 32
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.41 E-value=93 Score=37.49 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=24.6
Q ss_pred hHHHHHhcccccccC--CccCCCCCccHHHHHHHHHH
Q 003228 327 QGQALSALQVLKVIE--ADVKPGDLCIRREYARWLVS 361 (837)
Q Consensus 327 qIeALAaLGILkgiE--gtF~Pn~pITRAEFArwLVR 361 (837)
..+++..+|+-..++ ....|+..=+|.=|.-++=+
T Consensus 71 lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLiek 107 (594)
T PF05667_consen 71 LAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIEK 107 (594)
T ss_pred HHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHHH
Confidence 566777788766444 56789998888877654433
No 33
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.38 E-value=40 Score=41.57 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=49.7
Q ss_pred HHHHHHHHH-HHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HhhhhhHHH---------------------
Q 003228 558 NESFEKELS-MEREKIDVVEKMAE----EARQELERLRAEREVDKIA---LMKERAAIE--------------------- 608 (837)
Q Consensus 558 ~~~f~~el~-~Er~~~~~vek~~e----ea~~eLe~~r~ere~e~~~---llKerAa~e--------------------- 608 (837)
+++|+-||. .||....++|++-+ +.|.|-.|+|.++|++... .||.+--..
T Consensus 836 kr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~e 915 (1187)
T KOG0579|consen 836 KRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKE 915 (1187)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455565553 57888888887654 4566777889999988753 344332222
Q ss_pred -----H---HHHHHHHhHHHHHHHHHHhhhcc
Q 003228 609 -----S---EMEILSKLRREVEEQLESLMSNK 632 (837)
Q Consensus 609 -----~---e~q~L~~Lr~EVde~~q~L~s~~ 632 (837)
+ +++.+.+++.++|.||++++...
T Consensus 916 q~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~ 947 (1187)
T KOG0579|consen 916 QIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKH 947 (1187)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23567788888888888887654
No 34
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.22 E-value=50 Score=35.21 Aligned_cols=73 Identities=26% Similarity=0.224 Sum_probs=41.6
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 595 VDKIALMKE-RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 667 (837)
Q Consensus 595 ~e~~~llKe-rAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 667 (837)
.+.+.+|-+ +--.+.+.+.|-.-+.+.+++.++|......-..|+..|..-..+++.+-..+.......+.|.
T Consensus 32 e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea 105 (246)
T PF00769_consen 32 EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEA 105 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344545533 4455778889999999999999999999998888888877766666666655555444444443
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=84.97 E-value=1e+02 Score=37.63 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=6.5
Q ss_pred HHHHHHhHHHHhh
Q 003228 799 VQELQQSTAEFRS 811 (837)
Q Consensus 799 ~~~~~~~~~~~~~ 811 (837)
+..++.....+|.
T Consensus 967 ~~~l~~~i~~lg~ 979 (1179)
T TIGR02168 967 EEEARRRLKRLEN 979 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555555
No 36
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.48 E-value=1e+02 Score=37.18 Aligned_cols=65 Identities=26% Similarity=0.369 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH
Q 003228 558 NESFEKELSMEREKIDVVEKMAEEAR-----------------QELERLRAEREVDKIALMKERAAIESEMEILSKLRRE 620 (837)
Q Consensus 558 ~~~f~~el~~Er~~~~~vek~~eea~-----------------~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~E 620 (837)
++.|+++|.+=.+-++++|--.+..+ .+++++..||++-.-++.|=.-+++..++.+-.++.|
T Consensus 289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35577766654444444443333333 2455566666666666666666666666665555554
Q ss_pred HH
Q 003228 621 VE 622 (837)
Q Consensus 621 Vd 622 (837)
+.
T Consensus 369 ~~ 370 (581)
T KOG0995|consen 369 IE 370 (581)
T ss_pred HH
Confidence 43
No 37
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=83.65 E-value=64 Score=37.37 Aligned_cols=57 Identities=28% Similarity=0.348 Sum_probs=40.7
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003228 520 GEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA 579 (837)
Q Consensus 520 G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~ 579 (837)
|-..++|.+||..|- |-+++....-| .|.++.++|++ |.-+-|.+||=|-.-+|..+
T Consensus 259 ~~~l~aileeL~eIk-~~q~~Leesye-~Lke~~krdy~-fi~etLQEERyR~erLEEqL 315 (455)
T KOG3850|consen 259 GAALDAILEELREIK-ETQALLEESYE-RLKEQIKRDYK-FIAETLQEERYRYERLEEQL 315 (455)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344789999998875 34444444333 58888889995 88888899988877766555
No 38
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.57 E-value=1.1e+02 Score=36.78 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 003228 639 KERINMLRKEAENEN----QEIARLQYELEVE 666 (837)
Q Consensus 639 k~~l~kL~~~~e~~~----q~i~~~k~~LE~E 666 (837)
+.++|.|+.+|++.. ++|.+++.....+
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd 234 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRD 234 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 345555555555554 5555555544443
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.15 E-value=1.6e+02 Score=38.28 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 003228 659 LQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRW 698 (837)
Q Consensus 659 ~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW 698 (837)
++.+++.-.+-|..++.=.++--.....+.+-|.+...+|
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki 866 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455554444443333333333344443343
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.34 E-value=1.1e+02 Score=35.94 Aligned_cols=114 Identities=26% Similarity=0.266 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHH
Q 003228 547 SALVAEVEKEINESFEKELSM---EREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEE 623 (837)
Q Consensus 547 ~~l~~~~~~di~~~f~~el~~---Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde 623 (837)
+..+..+++++..+=..++.. ++.....+...+..+..||+..+..-++-+.+...=|..+++=+-.|-+.|.++..
T Consensus 248 ~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~ 327 (522)
T PF05701_consen 248 SAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER 327 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667776666656665 35566667777888899999999888888888888888888888888888888888
Q ss_pred HHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 624 QLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 660 (837)
Q Consensus 624 ~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k 660 (837)
+-+++..-.+.|..=+..|.+++.+++.-+..-.+.+
T Consensus 328 lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k 364 (522)
T PF05701_consen 328 LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAK 364 (522)
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh
Confidence 8888888888777777777777777765444444433
No 41
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=82.34 E-value=65 Score=37.44 Aligned_cols=126 Identities=22% Similarity=0.245 Sum_probs=73.3
Q ss_pred hcchhhhHHHH--HHHHHHHHHhHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHH-
Q 003228 519 IGEASDAVNEE--LQRIEAESAAENAVSE-HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEE----ARQELERLR- 590 (837)
Q Consensus 519 sG~~~e~v~eE--L~RlEAE~~a~~av~~-~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~ee----a~~eLe~~r- 590 (837)
+-..++.+..| +.+.|....++..-.. --.|..++ .||+ ||.++|..|=+...+.=-+++. ...+|+-+.
T Consensus 42 ~r~~s~~ir~~sr~l~~e~~~~t~~~q~dtt~~L~~R~-~di~-~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~ 119 (421)
T KOG2685|consen 42 SRDQSERIRRESRLLVNETNALTDKMQRDTTEKLGQRL-DDVN-FWKGELDRELEDLAAEIDDLLHEKRRLERALNALAL 119 (421)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344445555 4555566666655444 34677777 7896 9999999886554442222222 222222111
Q ss_pred --HH-------HHHH----------HHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH
Q 003228 591 --AE-------REVD----------KIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 651 (837)
Q Consensus 591 --~e-------re~e----------~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~ 651 (837)
.. |++- -.+|+||-+.|++=+.+|.+.=..+.+|+..+- +-=++|..|++.
T Consensus 120 P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr----------~ar~~Le~Dl~d 189 (421)
T KOG2685|consen 120 PLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTLERAEEQLRLNR----------EARQNLERDLSD 189 (421)
T ss_pred cHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHhhhhhh
Confidence 01 2211 136788888888888888888888888776543 233566667766
Q ss_pred HHHHH
Q 003228 652 ENQEI 656 (837)
Q Consensus 652 ~~q~i 656 (837)
|.+++
T Consensus 190 K~eA~ 194 (421)
T KOG2685|consen 190 KQEAY 194 (421)
T ss_pred hhhhh
Confidence 66654
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.26 E-value=74 Score=33.88 Aligned_cols=119 Identities=23% Similarity=0.349 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH
Q 003228 549 LVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAER---EVDKIALMKERAAIESEMEILSKLRREVEEQL 625 (837)
Q Consensus 549 l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~er---e~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 625 (837)
++.+-+.|+...|..++..=+........-+..++.|+.++|..- ..++..|-...++++.+...|- .+.+...
T Consensus 181 ~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le---~~~~~~~ 257 (312)
T PF00038_consen 181 IAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE---QRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH---HHHHHHH
Confidence 344445666667776665555555555555666666666666532 2333344444444444443332 1222221
Q ss_pred HHhhhcceehhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 003228 626 ESLMSNKVEISYEKERINMLRKEAE---NENQEIARLQYELEVERKALSMA 673 (837)
Q Consensus 626 q~L~s~~~ei~~Ek~~l~kL~~~~e---~~~q~i~~~k~~LE~EkkAL~m~ 673 (837)
+.+-. .|..=...|.+|+.+++ .+.+.+.++|--|+.|..+.+-|
T Consensus 258 ~~~~~---~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 258 EEYQA---EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11111 11111233455555554 34588999999999998876543
No 43
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.69 E-value=69 Score=33.19 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 003228 686 EQAKALEGA 694 (837)
Q Consensus 686 e~A~vLEea 694 (837)
.|...+.++
T Consensus 145 ~r~~l~~~l 153 (302)
T PF10186_consen 145 RRRQLIQEL 153 (302)
T ss_pred HHHHHHHHH
Confidence 344444443
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.14 E-value=1.9e+02 Score=37.28 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=53.1
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhhhhHH
Q 003228 730 VDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNL------KKWASKASMRAAELKDATILKAKGSVQ 800 (837)
Q Consensus 730 ~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (837)
+-++=+|-+.|-+|...|-..|+-+.-.+|++.=.++..+.+.+ |..+.+.....++.+-.+..|||..+.
T Consensus 960 p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN 1036 (1174)
T KOG0933|consen 960 PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVN 1036 (1174)
T ss_pred HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666778888888888889999999998887777665544 456666777778888888888877654
No 45
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.11 E-value=94 Score=33.70 Aligned_cols=60 Identities=27% Similarity=0.281 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 673 (837)
Q Consensus 614 L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~ 673 (837)
+..|..|++-.=+++.+-.-++..=.+++++|..+++..+..+.+++-.+...++++.-.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e 150 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEE 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333333333334555555555555666666666665555555443
No 46
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.71 E-value=92 Score=36.56 Aligned_cols=148 Identities=24% Similarity=0.303 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHH-HHHHhHHHHhhhHHHH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003228 523 SDAVNEELQRIE-AESAAENAVSEHSALV--------------AEVEKEINESFEKELSMEREKIDVVEKMAEEARQELE 587 (837)
Q Consensus 523 ~e~v~eEL~RlE-AE~~a~~av~~~~~l~--------------~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe 587 (837)
.+-+.+|+.||. +|+..+..-.+...|- .++.+.+...++.++..=.++...+.-.++++..+|.
T Consensus 211 ~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~ 290 (563)
T TIGR00634 211 DEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQ 290 (563)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777776 6666555444433221 1112222222343333323333444444444444444
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 588 RLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 667 (837)
Q Consensus 588 ~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 667 (837)
+....-+-+-. +-..++.....+.+|++.--..++.|...+-++..|-+.++....+++.-.+++..++..++.=-
T Consensus 291 ~~~~~l~~dp~----~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a 366 (563)
T TIGR00634 291 NYLDELEFDPE----RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAA 366 (563)
T ss_pred HHHHhCCCCHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332111111 11335555556666665555555555555555555555555555556655556665555555444
Q ss_pred HHHHHHH
Q 003228 668 KALSMAR 674 (837)
Q Consensus 668 kAL~m~R 674 (837)
+.|+..|
T Consensus 367 ~~Ls~~R 373 (563)
T TIGR00634 367 VALSLIR 373 (563)
T ss_pred HHHHHHH
Confidence 4555443
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=79.49 E-value=2.1e+02 Score=37.46 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHH-------HHhHH---HHHHHHH
Q 003228 560 SFEKELSMEREKIDVVEKMAEEARQELERLRAEREVD---KIALMKERAAIESEMEIL-------SKLRR---EVEEQLE 626 (837)
Q Consensus 560 ~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e---~~~llKerAa~e~e~q~L-------~~Lr~---EVde~~q 626 (837)
.-.+++..|+++...++.+...-..||+.++.....- +..+.+.|+.++.+...+ .+||. +...|+|
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq 577 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQ 577 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHH
Confidence 4455667777777777777777777777764433332 223344444444322221 12222 2233333
Q ss_pred HhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 627 SLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 667 (837)
Q Consensus 627 ~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 667 (837)
.+.. +.....++++-|+......-++--.+++++|+++
T Consensus 578 ~~~e---~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~ 615 (1317)
T KOG0612|consen 578 QELE---ENRDLEDKLSLLEESKSKLSKENKKLRSELEKER 615 (1317)
T ss_pred HHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 4444445555444444444444444444444444
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.33 E-value=75 Score=31.60 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=13.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003228 562 EKELSMEREKIDVVEKMAEEARQELERLR 590 (837)
Q Consensus 562 ~~el~~Er~~~~~vek~~eea~~eLe~~r 590 (837)
.+|+..++++..+.+..+......+...+
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455555555554444444333333
No 49
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.18 E-value=46 Score=36.94 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhh
Q 003228 643 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWV 722 (837)
Q Consensus 643 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~ 722 (837)
+.|...+-..+.++.+...+||..|.++..++.=..+=-...++|-..| ++|||-++=| .-..+.+.++.|.
T Consensus 122 ee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli-------~khGlVlv~~-~~ngd~~~~~~~~ 193 (302)
T PF09738_consen 122 EELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI-------EKHGLVLVPD-ATNGDTSDEPNNV 193 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCeeeCCC-CCCCccccCcccc
Confidence 3333333334444455566778888887777654433222233444444 5799988766 5556666666666
Q ss_pred hcccccch
Q 003228 723 NAGKQFSV 730 (837)
Q Consensus 723 ~~~~~~~~ 730 (837)
-.++..-|
T Consensus 194 ~~~~~~~v 201 (302)
T PF09738_consen 194 GHPKRALV 201 (302)
T ss_pred CCCccccc
Confidence 65555544
No 50
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=77.94 E-value=30 Score=43.87 Aligned_cols=38 Identities=26% Similarity=0.231 Sum_probs=22.2
Q ss_pred cccCCCCCcHHHHHHHHHhcchhhhHHHHHHHHHHHHHh
Q 003228 501 LFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAA 539 (837)
Q Consensus 501 ~FqPnkPVTRAEAAAaL~sG~~~e~v~eEL~RlEAE~~a 539 (837)
...|..-.|+-.|.+-.+.|+.... ..|-.|+|.|+.-
T Consensus 409 ~~~~s~~~~~~~~~~g~~g~r~eke-~~ER~r~e~e~~e 446 (1021)
T PTZ00266 409 RKYPQDGATHCHAVNGHYGGRVDKD-HAERARIEKENAH 446 (1021)
T ss_pred cccccccccccccccCccccccchh-HHHHHHHHHHHHH
Confidence 3456666666666666666665332 2566666666553
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.90 E-value=2.2e+02 Score=37.94 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=10.5
Q ss_pred CCccHHHHHHHHHHh
Q 003228 348 DLCIRREYARWLVSA 362 (837)
Q Consensus 348 ~pITRAEFArwLVRA 362 (837)
.++|..|+-..+-..
T Consensus 146 ~~~ti~Elk~~i~e~ 160 (1486)
T PRK04863 146 RVLTLNELKDKAAAL 160 (1486)
T ss_pred ccCCHHHHHHHHHHh
Confidence 467888888776553
No 52
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.86 E-value=1.8e+02 Score=35.67 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.5
Q ss_pred CcHHHH
Q 003228 435 LSRQDL 440 (837)
Q Consensus 435 ITRQEL 440 (837)
+++.++
T Consensus 119 ~~~~~~ 124 (1179)
T TIGR02168 119 CRLKDI 124 (1179)
T ss_pred ccHHHH
Confidence 344443
No 53
>PRK02224 chromosome segregation protein; Provisional
Probab=77.54 E-value=1.8e+02 Score=35.51 Aligned_cols=12 Identities=33% Similarity=0.385 Sum_probs=5.0
Q ss_pred hhhhhhhhhHHh
Q 003228 819 RVAGDCREGVEK 830 (837)
Q Consensus 819 r~~~~c~~gv~k 830 (837)
.+.+.|+..+.+
T Consensus 468 ~~~~~~~~~~~~ 479 (880)
T PRK02224 468 ETIEEDRERVEE 479 (880)
T ss_pred hhHHHHHHHHHH
Confidence 344444444443
No 54
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=76.63 E-value=2.1e+02 Score=35.74 Aligned_cols=71 Identities=27% Similarity=0.301 Sum_probs=45.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------HHHHhHHHHHHHHHHhhhcceeh
Q 003228 565 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME---------ILSKLRREVEEQLESLMSNKVEI 635 (837)
Q Consensus 565 l~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q---------~L~~Lr~EVde~~q~L~s~~~ei 635 (837)
+..++.--.+|.-+.+++.+-+..+ |+....+.|||-|+..|+. ++..+-.|-|||.-.|+.+--+.
T Consensus 390 ~~~~k~~~s~~ssl~~e~~QRva~l----EkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkL 465 (961)
T KOG4673|consen 390 DLKRKSNESEVSSLREEYHQRVATL----EKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKL 465 (961)
T ss_pred HHHHHhhcccccchHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445666666666555443 4556678888888887766 34445566899999998876666
Q ss_pred hHHH
Q 003228 636 SYEK 639 (837)
Q Consensus 636 ~~Ek 639 (837)
+-++
T Consensus 466 SK~q 469 (961)
T KOG4673|consen 466 SKKQ 469 (961)
T ss_pred HHHH
Confidence 5543
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.05 E-value=1.3e+02 Score=33.12 Aligned_cols=106 Identities=25% Similarity=0.269 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHhHHHH-
Q 003228 546 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVD---KIALMKERAAIESEMEILSKLRREV- 621 (837)
Q Consensus 546 ~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e---~~~llKerAa~e~e~q~L~~Lr~EV- 621 (837)
+..|.++ ++|- -|+-++ .......++..++....+.+.+....+.- +..+...+++++.+...|..+..|+
T Consensus 130 ~aRl~aK--~~WY-eWR~~l--l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~ 204 (325)
T PF08317_consen 130 YARLEAK--KMWY-EWRMQL--LEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE 204 (325)
T ss_pred HHHHHHH--HHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444 4553 555443 34555556666666666666665533322 2244445555666555555554433
Q ss_pred -------HHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHH
Q 003228 622 -------EEQLESLMSNKVEISYEKERINMLRKEAENENQEI 656 (837)
Q Consensus 622 -------de~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i 656 (837)
...-+.|+..+.+|..-+..|..|+.+++...+.+
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443333
No 56
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.83 E-value=21 Score=43.66 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceeh
Q 003228 577 KMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 635 (837)
Q Consensus 577 k~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei 635 (837)
.+.+.|+.-+.....+-++-...|-++|..++.+++.+..++.|++++.+.|-.++-++
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444555555666666666666666666666666666655544444
No 57
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=74.08 E-value=66 Score=39.59 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHhHHHHHHHHHHh
Q 003228 582 ARQELERLRAEREVDKIALMKERAAIESE-MEILSKLRREVEEQLESL 628 (837)
Q Consensus 582 a~~eLe~~r~ere~e~~~llKerAa~e~e-~q~L~~Lr~EVde~~q~L 628 (837)
.+.++++++.+.++.+..|-+++..++.+ .+++..+++|..++++..
T Consensus 530 ~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a 577 (771)
T TIGR01069 530 KNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL 577 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344443333334343333333332 234445555555555443
No 58
>PRK11637 AmiB activator; Provisional
Probab=73.76 E-value=1.6e+02 Score=33.24 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 003228 526 VNEELQRIEAE 536 (837)
Q Consensus 526 v~eEL~RlEAE 536 (837)
+.++|..++.+
T Consensus 45 ~~~~l~~l~~q 55 (428)
T PRK11637 45 NRDQLKSIQQD 55 (428)
T ss_pred hHHHHHHHHHH
Confidence 44445444443
No 59
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.73 E-value=1e+02 Score=30.92 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 003228 637 YEKERINMLRKEAE 650 (837)
Q Consensus 637 ~Ek~~l~kL~~~~e 650 (837)
-|++.|.+.+.+.+
T Consensus 80 sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 80 SEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444333333
No 60
>PRK09039 hypothetical protein; Validated
Probab=73.57 E-value=1.6e+02 Score=32.98 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=36.7
Q ss_pred HHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 625 LESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR 674 (837)
Q Consensus 625 ~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R 674 (837)
-+.|...+.+|...+-.++.|+.+++.=...+..++..|.+=++-..-++
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~ 171 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQ 171 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888888888888877778887777766555444443
No 61
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.92 E-value=1.9e+02 Score=35.93 Aligned_cols=113 Identities=20% Similarity=0.204 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH---HHhhhcceehhHHHHHHHHHH
Q 003228 570 EKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL---ESLMSNKVEISYEKERINMLR 646 (837)
Q Consensus 570 ~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~---q~L~s~~~ei~~Ek~~l~kL~ 646 (837)
.++.++|.-+-.++++|.+.++|.+.=....-.-+.+.++--..-.+||.|+.|.= +||+.+-.++-.|--.|||.-
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34555555555667777777766654443333333333333333456677776654 456777666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003228 647 KEAENENQEIARLQYELEVERKALSMARAWAEDEAK 682 (837)
Q Consensus 647 ~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~ 682 (837)
+-+-.-+=+..-+|-++..=.+=..++++=+||-++
T Consensus 114 s~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 114 SVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444444444444433444455555554433
No 62
>PRK12705 hypothetical protein; Provisional
Probab=71.68 E-value=2.2e+02 Score=33.89 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=9.6
Q ss_pred hcCcEEEEcCCccc
Q 003228 700 RQGIKVVVDKDLRE 713 (837)
Q Consensus 700 ~~gikv~vd~~~~~ 713 (837)
..|+.|+||+.-..
T Consensus 227 ~tGvdliiddtp~~ 240 (508)
T PRK12705 227 LTGVDLIIDDTPEA 240 (508)
T ss_pred hhCCceEecCCccc
Confidence 45888888875443
No 63
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.63 E-value=1.1e+02 Score=37.70 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcchhhhHHHH-HHHHHHHHHhHHHHhhh
Q 003228 510 NAQAAVALAIGEASDAVNEE-LQRIEAESAAENAVSEH 546 (837)
Q Consensus 510 RAEAAAaL~sG~~~e~v~eE-L~RlEAE~~a~~av~~~ 546 (837)
-.|.-.+|. ++.+++++| |.|.+ .|+.+...|
T Consensus 534 ~~E~l~lL~--~a~~vlreeYi~~~~---~ar~ei~~r 566 (717)
T PF10168_consen 534 PQECLELLS--QATKVLREEYIEKQD---LAREEIQRR 566 (717)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344555554 788888888 66664 244444444
No 64
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=71.26 E-value=54 Score=32.81 Aligned_cols=79 Identities=28% Similarity=0.377 Sum_probs=57.5
Q ss_pred HHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003228 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 693 (837)
Q Consensus 614 L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEe 693 (837)
|..|..+..+.++.+-.+-..--.=.+.|+-+..+++.|-+.+..+--.++++.+|+ ..|++|-++|++.++.
T Consensus 3 LYel~~~~~~l~~~~e~~~~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~-------k~E~krL~~rkk~~e~ 75 (162)
T PF05565_consen 3 LYELTDEYLELLELLEEGDLDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAI-------KAEIKRLQERKKSIEN 75 (162)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344555555555444343222112246788889999999999999999999888764 6899999999999999
Q ss_pred HhHHHh
Q 003228 694 ARDRWE 699 (837)
Q Consensus 694 a~~rW~ 699 (837)
-..|++
T Consensus 76 ~~~~Lk 81 (162)
T PF05565_consen 76 RIDRLK 81 (162)
T ss_pred HHHHHH
Confidence 888877
No 65
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.03 E-value=3.4e+02 Score=35.70 Aligned_cols=59 Identities=25% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhc
Q 003228 643 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQ 701 (837)
Q Consensus 643 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~ 701 (837)
++.+.+++.-+.++.+|+-.++.|.+-|.=-+.=+..+...-++--.-+|+.--.|..+
T Consensus 436 e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~ 494 (1293)
T KOG0996|consen 436 EKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ 494 (1293)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666666666666666666666666666655555543
No 66
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=70.10 E-value=3.3e+02 Score=35.12 Aligned_cols=17 Identities=6% Similarity=0.305 Sum_probs=9.5
Q ss_pred ccCCCCcCcHHHHHHHH
Q 003228 428 FFLPESPLSRQDLVSWK 444 (837)
Q Consensus 428 tFrPDsPITRQELAvwk 444 (837)
||==+...+..|...+.
T Consensus 112 Y~INg~~~~~~dI~~l~ 128 (1163)
T COG1196 112 YYINGEKVRLKDIQDLL 128 (1163)
T ss_pred EEECCcEeeHHHHHHHH
Confidence 45455566666665543
No 67
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.90 E-value=1.7e+02 Score=37.89 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=53.8
Q ss_pred HHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003228 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 693 (837)
Q Consensus 614 L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEe 693 (837)
+.+++.....+...+.+-.-.+.-.+..+.+|+.+.....++.-++.-+|...+.-|..+.+=--.=.|+.+-++ ++ +
T Consensus 418 ver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~e-av-e 495 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQE-AV-E 495 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHH-HH-H
Confidence 345555556666666666666777777788888888888888888888888887777777443322233333333 22 3
Q ss_pred HhHHHh
Q 003228 694 ARDRWE 699 (837)
Q Consensus 694 a~~rW~ 699 (837)
+-.||-
T Consensus 496 ~lKr~f 501 (1141)
T KOG0018|consen 496 ALKRLF 501 (1141)
T ss_pred HHHHhC
Confidence 456664
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=69.12 E-value=3.3e+02 Score=34.75 Aligned_cols=232 Identities=19% Similarity=0.233 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHH--------------hHHHHHHHHHHh---hh
Q 003228 571 KIDVVEKMAEEARQELERL---RAEREVDKIALMKERAAIESEMEILSK--------------LRREVEEQLESL---MS 630 (837)
Q Consensus 571 ~~~~vek~~eea~~eLe~~---r~ere~e~~~llKerAa~e~e~q~L~~--------------Lr~EVde~~q~L---~s 630 (837)
+.+++||--..|..+.-.+ +..-+.++..|+-+.|..+.|+.+|.+ .+.|+.+-+++| -+
T Consensus 352 k~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgt 431 (1265)
T KOG0976|consen 352 KLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGT 431 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhH
Confidence 3444444433333333322 233345666777788888888777653 233444444443 33
Q ss_pred cceehhHHHHHHHHHHHHHH--------HHHHHHHHHH---HHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 003228 631 NKVEISYEKERINMLRKEAE--------NENQEIARLQ---YELEVERK---ALSMARAWAEDEAKRAREQAKALEGARD 696 (837)
Q Consensus 631 ~~~ei~~Ek~~l~kL~~~~e--------~~~q~i~~~k---~~LE~Ekk---AL~m~R~W~EdEA~r~~e~A~vLEea~~ 696 (837)
.++..-|--.+++-|-+-.+ ..++-|.+++ .-||.-|| -+-|+.+--+.+|+|-.+--+.|.+.+=
T Consensus 432 hl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethl 511 (1265)
T KOG0976|consen 432 HLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHL 511 (1265)
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332233334444443333 3333333322 22222222 1346666667777776655555444332
Q ss_pred HHhhcCcEEEEc--CCccccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcc----------cchHHHHHHHHH
Q 003228 697 RWERQGIKVVVD--KDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS----------GKSKEIINTIIH 764 (837)
Q Consensus 697 rW~~~gikv~vd--~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~----------~~~~~~~~~~~~ 764 (837)
-++..--+..-- +|-.-+.+ -....+-+--+||.|...=--|+..|-..++ +++|.-..+.++
T Consensus 512 dyR~els~lA~r~ag~h~adss-----qrdselrsAkktIqevkadn~k~q~lL~evrq~q~k~leenv~lRkgma~a~~ 586 (1265)
T KOG0976|consen 512 DYRSELSELAHRKAGDHPADSS-----QRDSELRSAKKTIQEVKADNPKAQSLLAEVRQRQKKSLEENVFLRKGMARAHH 586 (1265)
T ss_pred HHHHHHHHHhhccCCCCCCCCC-----cccHHHHHHHHHHHhccccCHHHHHHhhchhhhhhhccChHHHHHHHHHHHHh
Confidence 222100000000 01111111 1223344555677765333334445555444 566666777777
Q ss_pred HHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHH
Q 003228 765 KILLFIS---NLKKWASKASMRAAELKDATILKAKGSVQELQQSTAE 808 (837)
Q Consensus 765 ~i~~~i~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (837)
+|-++-. .+|+--+.++..+..|+|. ..|..+.+++..+-|.+
T Consensus 587 kIee~kr~w~nsret~erl~let~~~e~k-~~k~eeelqek~~qVme 632 (1265)
T KOG0976|consen 587 KIEERKRVWLNSRETKERLCLETVHFEDK-LDKLEEELQEKECQVME 632 (1265)
T ss_pred hhHHHHhhhhhhHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHhc
Confidence 7766543 3566666777778888888 77888888887776654
No 69
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.32 E-value=1.2e+02 Score=32.58 Aligned_cols=47 Identities=28% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 003228 565 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME 612 (837)
Q Consensus 565 l~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q 612 (837)
|..=|.|..+++|+..+.+.|++.++.+. +-+.+|-||+..+..|+-
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33447888889999888888888777655 555555555555554443
No 70
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=68.27 E-value=2.4e+02 Score=32.99 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHH
Q 003228 578 MAEEARQELERLRAEREVDKIALMKERAAIESEM--EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQE 655 (837)
Q Consensus 578 ~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~--q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~ 655 (837)
+.++..++|...+.+.+++....++++-.-|... .-|..|+..|.++- ..+..+.++..+..+++.|..-+..=...
T Consensus 342 ~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le-~~~~~~~~~~~~~~~~~~l~~a~~~l~~~ 420 (582)
T PF09731_consen 342 HEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALE-EALDARSEAEDENRRAQQLWLAVDALKSA 420 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666665554444332 23555566665543 34455666667777777776666555444
Q ss_pred HHHH
Q 003228 656 IARL 659 (837)
Q Consensus 656 i~~~ 659 (837)
+..-
T Consensus 421 l~~~ 424 (582)
T PF09731_consen 421 LDSG 424 (582)
T ss_pred HHcC
Confidence 4443
No 71
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.39 E-value=2.7e+02 Score=33.11 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH--HHhhhhHHHHHHh-HHHHhhhhccc
Q 003228 766 ILLFISNLKKWASKASMRAAELKDATI--LKAKGSVQELQQS-TAEFRSNLTEG 816 (837)
Q Consensus 766 i~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 816 (837)
+..-|..|.+.-.++.+.|..|-.|-. +|+.|.|-|++.. +.+. +++.+|
T Consensus 170 L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~-sGL~~~ 222 (475)
T PRK10361 170 LAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEA-SGLREG 222 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHH-hCCCcC
Confidence 334455555666666777777766653 4788999888754 4443 355444
No 72
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=66.76 E-value=30 Score=31.25 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003228 738 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMR 783 (837)
Q Consensus 738 ~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~ 783 (837)
+.|++.+..+...+...+.+.++.+-+++...+..+|+.+.++...
T Consensus 8 ~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~ 53 (94)
T PF05957_consen 8 EQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQ 53 (94)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555444444433
No 73
>PRK12705 hypothetical protein; Provisional
Probab=66.59 E-value=1.9e+02 Score=34.49 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=29.7
Q ss_pred HHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003228 621 VEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRARE 686 (837)
Q Consensus 621 Vde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e 686 (837)
++..-+.|...+-.+...++.++++..+...+.+.+..+.. -+|-.++-.=+++|+++.-+
T Consensus 100 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~-----~eak~~l~~~~~~~~~~e~~ 160 (508)
T PRK12705 100 LDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTP-----EQARKLLLKLLDAELEEEKA 160 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444454443333333333333322 24666777777877775433
No 74
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=66.02 E-value=83 Score=40.23 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=6.7
Q ss_pred HHHhHHHHHHHHHHhh
Q 003228 733 TVSRAQSLVDKLKAMA 748 (837)
Q Consensus 733 ~~~ra~~l~~k~~~m~ 748 (837)
...|-..--|-+..|+
T Consensus 663 ~~~~~~~~~~~~~~~~ 678 (1021)
T PTZ00266 663 NFSRGKDSSDHVSSYK 678 (1021)
T ss_pred cccccccccchhhccc
Confidence 3444444444444443
No 75
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=65.23 E-value=77 Score=32.67 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 581 EARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 660 (837)
Q Consensus 581 ea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k 660 (837)
+...+|+.++..|+.. .+|+.+-.+.+.|..-..++...|+.+. ....++|++|..++..-++++.+-.
T Consensus 87 ~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~------~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 87 ELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYS------ENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445444443 4444444443333333333333333222 1356788888888887777776655
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 003228 661 YELEVERKALSMARAWAED 679 (837)
Q Consensus 661 ~~LE~EkkAL~m~R~W~Ed 679 (837)
-- +-++++|+..
T Consensus 156 DN-------I~~l~~~~~~ 167 (188)
T PF03962_consen 156 DN-------IFSLKSYLKK 167 (188)
T ss_pred hh-------HHHHHHHHHH
Confidence 33 4567777754
No 76
>PRK03918 chromosome segregation protein; Provisional
Probab=64.90 E-value=3.3e+02 Score=33.20 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=14.8
Q ss_pred HHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHH
Q 003228 622 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIA 657 (837)
Q Consensus 622 de~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~ 657 (837)
...++.|-.....+-.+.+.+++-..+++.+.+.+.
T Consensus 306 ~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~ 341 (880)
T PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLE 341 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443344444444444444433333
No 77
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=64.85 E-value=2.9e+02 Score=32.53 Aligned_cols=82 Identities=22% Similarity=0.343 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcce
Q 003228 554 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV 633 (837)
Q Consensus 554 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ 633 (837)
+.+|. .-..||..=.....++|---+.|++||+.-|+||+.-...+-.-|--+-.-.|+|.+| -+|+|+|-++=-
T Consensus 80 ~~qlr-~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~----t~Q~q~lqtrl~ 154 (499)
T COG4372 80 RPQLR-ALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARL----TKQAQDLQTRLK 154 (499)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44453 3344454444445555555566777777777776643332222222222233444443 445555554433
Q ss_pred ehhHHHH
Q 003228 634 EISYEKE 640 (837)
Q Consensus 634 ei~~Ek~ 640 (837)
.++.+..
T Consensus 155 ~l~~qr~ 161 (499)
T COG4372 155 TLAEQRR 161 (499)
T ss_pred HHHHHHH
Confidence 3444333
No 78
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.56 E-value=70 Score=33.65 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=14.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 003228 569 REKIDVVEKMAEEARQELERLRAE 592 (837)
Q Consensus 569 r~~~~~vek~~eea~~eLe~~r~e 592 (837)
|.+..++|+-+.+++.+|.+.+.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666666777666544
No 79
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.51 E-value=2.8e+02 Score=32.24 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003228 523 SDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAE 580 (837)
Q Consensus 523 ~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~e 580 (837)
-..+.+||.-+......-.--. ..|..+.+.|+ .++-..|.+||-|..-+|..+.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~--e~Lk~~~~~e~-~~~~~~LqEEr~R~erLEeqlN 268 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESI--EKLKEQYQREY-QFILEALQEERYRYERLEEQLN 268 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHH
Confidence 3456677766655443222222 34777788898 4999999999999888776663
No 80
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.32 E-value=1.7e+02 Score=35.21 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhccee
Q 003228 555 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVE 634 (837)
Q Consensus 555 ~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~e 634 (837)
+-|+.+|+.|+..=|.-+.+..+--..+..|+.+++.+-.+-+.-+.| .-+.+.--|.++++.+-+|..-..+
T Consensus 84 s~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~-------~~k~~~~~re~~~~~~~~l~~leAe 156 (546)
T KOG0977|consen 84 SGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEK-------AEKERRGAREKLDDYLSRLSELEAE 156 (546)
T ss_pred cchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHhhhhhhhhhH
Confidence 347777777777766666666555555555555555544333222221 2222233344455555555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 003228 635 ISYEKERINMLRKEAENENQ 654 (837)
Q Consensus 635 i~~Ek~~l~kL~~~~e~~~q 654 (837)
+.+=+.++.+|..++..=..
T Consensus 157 ~~~~krr~~~le~e~~~Lk~ 176 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKRLKA 176 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444433333
No 81
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=64.23 E-value=2.8e+02 Score=32.21 Aligned_cols=272 Identities=16% Similarity=0.186 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhHHHHHHHHHHhhh----
Q 003228 560 SFEKELSMEREKI-DVVEKMAEEARQELERLRAEREVDKIALMK----ERAAIESEMEILSKLRREVEEQLESLMS---- 630 (837)
Q Consensus 560 ~f~~el~~Er~~~-~~vek~~eea~~eLe~~r~ere~e~~~llK----erAa~e~e~q~L~~Lr~EVde~~q~L~s---- 630 (837)
.+-+.+..|..++ .+||..+.++...|-.--.+-+++...++. ..+-++..++-|..|..+|.+.++.=..
T Consensus 11 ~~~~~~~~e~~~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~ 90 (473)
T PF14643_consen 11 KALESFHEELASISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKE 90 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665544 458888888887777666666655555443 3456677788888888877774433211
Q ss_pred -cceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH--------------HhHHHHHHHHHHHHH
Q 003228 631 -NKVEISYEKERINMLRKEAENENQEIARLQYELEVERK------ALSMAR--------------AWAEDEAKRAREQAK 689 (837)
Q Consensus 631 -~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk------AL~m~R--------------~W~EdEA~r~~e~A~ 689 (837)
..-=-..|++|..+|.+-+..-...+.+.=+.+..+.+ |..|=. .-.+.+-++-+....
T Consensus 91 l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~rli~~ea~~iN~~ll~Nrra~a~L~~~L~~~~~~~e~~~~~ 170 (473)
T PF14643_consen 91 LDEDLEELEKERADKLKKVLRKYVEILEKIAHLLPPDVERLIEKEAMEINQALLGNRRAYADLFANLMEAELQRELSYRR 170 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11113578889999988888887777777666554433 332211 112222233333344
Q ss_pred HHHHHhHHHhhcCcEEEEcC---CccccccccchhhhcccccchHHHHHhHHHHHH----HHHHhhhhc-ccchHHHHHH
Q 003228 690 ALEGARDRWERQGIKVVVDK---DLREESDAAVMWVNAGKQFSVDQTVSRAQSLVD----KLKAMANDV-SGKSKEIINT 761 (837)
Q Consensus 690 vLEea~~rW~~~gikv~vd~---~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~----k~~~m~~~~-~~~~~~~~~~ 761 (837)
-.+...++|+..--...|.. .+.-+..-.|.++ ..-++.-...-..|.. -|..+..-. ...++.-+.+
T Consensus 171 ~w~~~~~~Wr~l~~~~~i~~f~~~~~s~~~~~P~~~----~~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~e 246 (473)
T PF14643_consen 171 RWQDRVDDWRALRHERAIQEFREFMASEEFQNPPER----KQLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVEE 246 (473)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCccccCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Confidence 45666677775433333321 1111111111111 1111111111122222 222222111 2455555777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhh-hhhhhhhHHhhhhhc
Q 003228 762 IIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRV-AGDCREGVEKLTQRF 835 (837)
Q Consensus 762 ~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~-~~~c~~gv~k~~~rf 835 (837)
....+..+-..+-.+......+.....+.....+...++.+++...+++..-.+.+-.+ ...|-.-|+++-++|
T Consensus 247 W~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~ 321 (473)
T PF14643_consen 247 WYASLNALNEQIDEYHQQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEF 321 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666666666677788888888888888888888888887665655443 456766666665554
No 82
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=63.50 E-value=2.2e+02 Score=30.65 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003228 560 SFEKELSMEREKIDVVEKMAEEARQELERLRA 591 (837)
Q Consensus 560 ~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ 591 (837)
.+..++...+..+...++-+..+..++.+.+.
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433333
No 83
>PRK09039 hypothetical protein; Validated
Probab=63.37 E-value=2.5e+02 Score=31.43 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHHHHHhHH
Q 003228 522 ASDAVNEELQRIEAESAAEN 541 (837)
Q Consensus 522 ~~e~v~eEL~RlEAE~~a~~ 541 (837)
.-....+||++|+++ +++.
T Consensus 47 ~i~~~~~eL~~L~~q-Ia~L 65 (343)
T PRK09039 47 EISGKDSALDRLNSQ-IAEL 65 (343)
T ss_pred HHhhHHHHHHHHHHH-HHHH
Confidence 334556777777766 3443
No 84
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.38 E-value=3.2e+02 Score=32.24 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=19.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003228 562 EKELSMEREKIDVVEKMAEEARQELERL 589 (837)
Q Consensus 562 ~~el~~Er~~~~~vek~~eea~~eLe~~ 589 (837)
+++|..|+.+..-.||+.+.+..=+.-+
T Consensus 211 ~e~L~~e~~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 211 DEALEAEQQRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4567788888888888777666555555
No 85
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.55 E-value=66 Score=35.51 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 003228 584 QELERLRAEREVDKIALMKERAAIESEMEI 613 (837)
Q Consensus 584 ~eLe~~r~ere~e~~~llKerAa~e~e~q~ 613 (837)
..|++++.+-.+++..|-++++.++.|...
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555443
No 86
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=61.38 E-value=2e+02 Score=29.64 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHH
Q 003228 602 KERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 658 (837)
Q Consensus 602 KerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~ 658 (837)
+.-..++.+.+.|.+...+++..-+.|...+-.+-.-+..++.+..+...+.+.|+.
T Consensus 89 ~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAg 145 (201)
T PF12072_consen 89 QREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333445555555555555555555555555444444455555555555555555443
No 87
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.04 E-value=2.1e+02 Score=29.62 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 003228 545 EHSALVAEVEKEINESFE 562 (837)
Q Consensus 545 ~~~~l~~~~~~di~~~f~ 562 (837)
+++.|+.+++..+...+.
T Consensus 81 ERGlLL~rvrde~~~~l~ 98 (189)
T PF10211_consen 81 ERGLLLLRVRDEYRMTLD 98 (189)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 368888888777766655
No 88
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.63 E-value=2.2e+02 Score=32.34 Aligned_cols=63 Identities=13% Similarity=0.258 Sum_probs=42.0
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003228 531 QRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALM 601 (837)
Q Consensus 531 ~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~ll 601 (837)
=++|-|+++-+ |.-.++-|- +-|+--+..=+.....++..+.+++..|+++..+..+.+..+-
T Consensus 196 WklEvERV~Pq-------LKv~~~~d~-kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 196 WKLEVERVLPQ-------LKVTIRADA-KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred HHHHHHHHhhh-------heeeccCCc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666544 222223343 4566665566788888999999999999999888777665443
No 89
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=60.24 E-value=2.7e+02 Score=34.42 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHH
Q 003228 524 DAVNEELQRIEA 535 (837)
Q Consensus 524 e~v~eEL~RlEA 535 (837)
+...|-|+|||-
T Consensus 107 ~~yQerLaRLe~ 118 (861)
T KOG1899|consen 107 PEYQERLARLEM 118 (861)
T ss_pred hHHHHHHHHHhc
Confidence 557788999983
No 90
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=59.60 E-value=40 Score=40.66 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHH
Q 003228 603 ERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKER 641 (837)
Q Consensus 603 erAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~ 641 (837)
||-.|+||+|-|-+-|-| +++|--+|+.|+.|+.+
T Consensus 654 erlrle~qRQrLERErmE----rERLEreRM~ve~eRr~ 688 (940)
T KOG4661|consen 654 ERLRLERQRQRLERERME----RERLERERMKVEEERRD 688 (940)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Confidence 445688888888776655 45777778888776543
No 91
>PRK11281 hypothetical protein; Provisional
Probab=57.47 E-value=5.6e+02 Score=33.51 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHhh
Q 003228 674 RAWAEDEAKRAREQAKALEGARDRWER 700 (837)
Q Consensus 674 R~W~EdEA~r~~e~A~vLEea~~rW~~ 700 (837)
|.|+..+-.+-+++-+.|.++-..++.
T Consensus 229 ~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 229 RDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555556666666666666553
No 92
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=57.16 E-value=5.1e+02 Score=32.90 Aligned_cols=188 Identities=19% Similarity=0.291 Sum_probs=104.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHH
Q 003228 569 REKIDVVEKMAEEARQELERLRAEREVDKIALMKER------AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 642 (837)
Q Consensus 569 r~~~~~vek~~eea~~eLe~~r~ere~e~~~llKer------Aa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l 642 (837)
|.+.++.+........-|+.+-.=-+....+|+++. +|+.-|+..-.-|++||..---...| .-|.-++
T Consensus 91 r~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s-----~~e~a~~ 165 (966)
T KOG4286|consen 91 RSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMS-----TLETARI 165 (966)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHHH-----HHHHHHH
Confidence 344444443333334444443332223334555543 68888888888899988753222211 2244444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhh
Q 003228 643 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWV 722 (837)
Q Consensus 643 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~ 722 (837)
-=.+-.++...+ .+-.++++-|-.|-.+.| -.+-+| +++..-|++-||.++ .|
T Consensus 166 fl~~~p~e~~e~--~~~~~e~~p~~r~q~~~r--------~~~kqa---~~~~~~we~l~~~~~-------------~w- 218 (966)
T KOG4286|consen 166 FLTEQPLEGLEK--YQEPRELPPEERAQNVTR--------LLRKQA---EEVNTEWEKLNLHSA-------------DW- 218 (966)
T ss_pred HHhcCCCcchhh--cCCcccCCHHHHHHHHHH--------HHHHHH---HHHHHHHHHhCcchh-------------hH-
Confidence 444444444433 445566665554444433 233334 677788999998763 45
Q ss_pred hcccccchHHHHHhHHHHHHHHHHhhhhcc------cchHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003228 723 NAGKQFSVDQTVSRAQSLVDKLKAMANDVS------GKSKEIINTII---HKILLFISNLKKWASKASMRAAELKDATI 792 (837)
Q Consensus 723 ~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~------~~~~~~~~~~~---~~i~~~i~~l~~~~~~~~~~~~~~~~~~~ 792 (837)
+-.|+.|+.|-+.|-..+..+..+++ +--+-|=+-+| +--++-|..+|+.++.+...++.+.|.|.
T Consensus 219 ----~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ 293 (966)
T KOG4286|consen 219 ----QRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLAR 293 (966)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHH
Confidence 35688898888887777776666655 11111111222 22234456677788888777777777654
No 93
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.14 E-value=38 Score=38.45 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 003228 587 ERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 628 (837)
Q Consensus 587 e~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 628 (837)
+++|..++++...+.++++++..-.|.|..-..|++.|.++|
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etL 258 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETL 258 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 345555666667777777777777777777777776666655
No 94
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=55.69 E-value=4.3e+02 Score=31.59 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHH
Q 003228 395 DPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVS 442 (837)
Q Consensus 395 dPyf~yIQAAAEAGIIsGkLSG~~~~s~dDG~~tFrPDsPITRQELAv 442 (837)
+-.+++|..+. -||.||+.+ .+-|.+.+.-|=..++.
T Consensus 75 ~a~vdhI~nlr--rIiagyl~~---------aygY~~~~a~~lA~fit 111 (489)
T PF05262_consen 75 NARVDHINNLR--RIIAGYLEA---------AYGYSDEDAETLATFIT 111 (489)
T ss_pred CCCccHHHHHH--HHHHHHHHH---------hcCCChhhHHHHHHHHH
Confidence 45677787764 588888842 22376766555444443
No 95
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=55.03 E-value=5.7e+02 Score=32.81 Aligned_cols=110 Identities=18% Similarity=0.262 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhhHHHHHHHHHHHhHHH---
Q 003228 555 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRA-----------EREVDKIALMKERAAIESEMEILSKLRRE--- 620 (837)
Q Consensus 555 ~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~-----------ere~e~~~llKerAa~e~e~q~L~~Lr~E--- 620 (837)
.+++ .|..-|-.|....++.=|+.++-+.+|.+-++ --+.++-.+-.++|+|.|.. ..-|..
T Consensus 273 ~qlk-~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~L---lEarrk~eg 348 (1265)
T KOG0976|consen 273 RQLK-AKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCAL---LEARRKAEG 348 (1265)
T ss_pred HHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcc
Confidence 4553 55555555555555555555444444443333 22344556667777777653 333333
Q ss_pred HHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 621 VEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 668 (837)
Q Consensus 621 Vde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 668 (837)
.|+.++.|--.+.+....-.+|+.+....+.+.|.+..++.+++--..
T Consensus 349 fddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 349 FDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555556666666666666666666666654443
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.94 E-value=3.8e+02 Score=30.78 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=4.6
Q ss_pred HHHHHHhHHHh
Q 003228 689 KALEGARDRWE 699 (837)
Q Consensus 689 ~vLEea~~rW~ 699 (837)
.-++....-|+
T Consensus 272 ~~~~~~~~~~~ 282 (562)
T PHA02562 272 EQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHhc
Confidence 33444444444
No 97
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=54.70 E-value=1.6e+02 Score=26.35 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=57.3
Q ss_pred HHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHh
Q 003228 731 DQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFR 810 (837)
Q Consensus 731 ~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (837)
...+...++.+..|..+...+......+-..|-..+..|+..|.++-..+..+..................++.......
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 13 RKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLS 92 (127)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888888888888888888888888888888888888888877776666655555555555554444443
No 98
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=54.69 E-value=3.1e+02 Score=29.64 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003228 554 EKEINESFEKELSMEREKIDVVEKMAEEARQE 585 (837)
Q Consensus 554 ~~di~~~f~~el~~Er~~~~~vek~~eea~~e 585 (837)
+..+.+.|...+...+.+...+.+.+......
T Consensus 156 ~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~ 187 (319)
T PF02601_consen 156 RQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRR 187 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 34566677777777777666666655544433
No 99
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=54.35 E-value=6.5e+02 Score=33.31 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=11.7
Q ss_pred CCCCccHHHHHHHH
Q 003228 346 PGDLCIRREYARWL 359 (837)
Q Consensus 346 Pn~pITRAEFArwL 359 (837)
.+.|+||.+|..+|
T Consensus 139 ~~~plt~~~l~~~l 152 (1353)
T TIGR02680 139 AGIPLTRDRLKEAL 152 (1353)
T ss_pred CCccCCHHHHHHHh
Confidence 48899999998765
No 100
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=53.94 E-value=81 Score=32.04 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=70.9
Q ss_pred HHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHh
Q 003228 731 DQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFR 810 (837)
Q Consensus 731 ~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (837)
+..++..+++.++|+.=..+-++...+++..+..+|.+--..||..--++-+++.++++.--+-+-..++++|-.+.+++
T Consensus 37 d~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~ 116 (155)
T PF07464_consen 37 DSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVS 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666666679999999999999999999999988899999999988877777788888888888877
Q ss_pred hhhcc-------cchhhhhhhhhhHHhhh
Q 003228 811 SNLTE-------GAKRVAGDCREGVEKLT 832 (837)
Q Consensus 811 ~~~~~-------~~kr~~~~c~~gv~k~~ 832 (837)
..+.. ..|.+.|+.-..+.++.
T Consensus 117 ~~~~~~~e~l~~~~K~~~D~~~k~~~~~~ 145 (155)
T PF07464_consen 117 ENSEGANEKLQPAIKQAYDDAVKAAQKVQ 145 (155)
T ss_dssp S---SS-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66433 33444455444444443
No 101
>PRK03918 chromosome segregation protein; Provisional
Probab=53.81 E-value=4.9e+02 Score=31.73 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003228 572 IDVVEKMAEEARQELERL 589 (837)
Q Consensus 572 ~~~vek~~eea~~eLe~~ 589 (837)
...+++-+.....+++++
T Consensus 202 ~~~l~~ei~~l~~e~~~l 219 (880)
T PRK03918 202 LEEVLREINEISSELPEL 219 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444433333333
No 102
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=53.12 E-value=5.4e+02 Score=31.96 Aligned_cols=16 Identities=6% Similarity=0.397 Sum_probs=10.4
Q ss_pred ccCCCCcCcHHHHHHH
Q 003228 428 FFLPESPLSRQDLVSW 443 (837)
Q Consensus 428 tFrPDsPITRQELAvw 443 (837)
+|--+.++|+.++..+
T Consensus 110 ~~~n~~~~~~~~~~~~ 125 (1164)
T TIGR02169 110 YYLNGQRVRLSEIHDF 125 (1164)
T ss_pred EEECCccccHHHHHHH
Confidence 4555667887776654
No 103
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.52 E-value=4.9e+02 Score=31.88 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 003228 547 SALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE 626 (837)
Q Consensus 547 ~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q 626 (837)
+.+.-+++|+++. ++++ =.+.-+.++-+.+...|.+++|-+..+..+++- |- |-.|+.-..+|++.--+-+.
T Consensus 420 ~d~i~~le~e~~~-y~de----~~kaqaevdrlLeilkeveneKnDkdkkiaele--r~-~kdqnkkvaNlkHk~q~Ekk 491 (654)
T KOG4809|consen 420 ADQIKQLEKEASY-YRDE----CGKAQAEVDRLLEILKEVENEKNDKDKKIAELE--RH-MKDQNKKVANLKHKQQLEKK 491 (654)
T ss_pred HHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHhhhccccchhhhcC--ch-hhhhhhHHhhHHHHHHHHHH
Confidence 4455566777763 3433 345556667777888999999988777766654 22 22233333344433323333
Q ss_pred HhhhcceehhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH---HHHHHHHHHHhH
Q 003228 627 SLMSNKVEISYEKERINMLRKE--AENENQEIARLQYELEVERKALSMAR-AWAEDEAKRA---REQAKALEGARD 696 (837)
Q Consensus 627 ~L~s~~~ei~~Ek~~l~kL~~~--~e~~~q~i~~~k~~LE~EkkAL~m~R-~W~EdEA~r~---~e~A~vLEea~~ 696 (837)
.-+-.-++|-.+.+.+-.-+.. ++...-++.++|.+|++=+--|++.| +-+|.|+--+ ++|-+.||++-.
T Consensus 492 k~aq~lee~rrred~~~d~sqhlq~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Lee~le 567 (654)
T KOG4809|consen 492 KNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILE 567 (654)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555544222221 44555566677777777776676664 5666666443 356667777643
No 104
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=52.51 E-value=2.6e+02 Score=28.09 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHH
Q 003228 593 REVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 649 (837)
Q Consensus 593 re~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~ 649 (837)
|..-.+.+...|..+..+.++|..+..++-+.|..+..+ .| +.-|.+|..+.
T Consensus 61 r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~--~y---~~~l~~li~~~ 112 (188)
T PRK02292 61 QELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD--KR---EELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hH---HHHHHHHHHhc
Confidence 444445667777899999999999999999999998875 22 56777777765
No 105
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=52.19 E-value=4.4e+02 Score=30.71 Aligned_cols=84 Identities=25% Similarity=0.275 Sum_probs=40.9
Q ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhHHHHhhh-HHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003228 513 AAVALAIGEASDAVNEELQRIEAESAAENAVSEH-SALVAEVEKEIN---ESFEKELSMEREKIDVVEKMAEEARQELER 588 (837)
Q Consensus 513 AAAaL~sG~~~e~v~eEL~RlEAE~~a~~av~~~-~~l~~~~~~di~---~~f~~el~~Er~~~~~vek~~eea~~eLe~ 588 (837)
||.+|..-+.+ -+.=+..|||++.+..--+++ ..+++-++++-+ +..+= ..|..|..+.+|-- .-.-|++
T Consensus 105 ~~s~LaAaE~k--hrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEF--e~~e~kK~E~~k~K--l~~qLee 178 (561)
T KOG1103|consen 105 AASLLAAAEKK--HRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEF--EIEEKKKAEIAKDK--LEMQLEE 178 (561)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHH
Confidence 45555532221 223356788888776655553 335554544433 33222 23334444444433 2355666
Q ss_pred HHHHHHHHHHHHhh
Q 003228 589 LRAEREVDKIALMK 602 (837)
Q Consensus 589 ~r~ere~e~~~llK 602 (837)
+|...+.-..-|+-
T Consensus 179 Ek~RHeqis~mLil 192 (561)
T KOG1103|consen 179 EKKRHEQISLMLIL 192 (561)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666554444443
No 106
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.12 E-value=5.6e+02 Score=31.86 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=19.7
Q ss_pred HhHHHHHHHHHHhhhcce-ehhHHHHHHHHHHHHHHHH
Q 003228 616 KLRREVEEQLESLMSNKV-EISYEKERINMLRKEAENE 652 (837)
Q Consensus 616 ~Lr~EVde~~q~L~s~~~-ei~~Ek~~l~kL~~~~e~~ 652 (837)
.|..-++.+++.+....= --.+|++..++|. .++.+
T Consensus 611 ~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~-~~~~~ 647 (717)
T PF10168_consen 611 KLMKRVDRVLQLLNSQLPVLSEAEREFKKELE-RMKDQ 647 (717)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-HHHHH
Confidence 455567888888865433 3334655544443 34333
No 107
>PHA02562 46 endonuclease subunit; Provisional
Probab=51.92 E-value=4.2e+02 Score=30.42 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 616 KLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 663 (837)
Q Consensus 616 ~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~L 663 (837)
..+.+++.++..|.....++...++++.+++..++.-.+.+...+..|
T Consensus 306 d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i 353 (562)
T PHA02562 306 DKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333333444444444444444444433333
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=51.18 E-value=3.6e+02 Score=29.41 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=30.8
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 600 LMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRK----EAENENQEIARLQYELEVERKALSM 672 (837)
Q Consensus 600 llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~----~~e~~~q~i~~~k~~LE~EkkAL~m 672 (837)
-.++..|+..+++.+-.=.......+..| +.+.+.|++... .+......+...+..++.|.+.+.-
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l-------~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAEL-------MEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777666544333333333333 223333333333 3333334445555556665555543
No 109
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.56 E-value=1.6e+02 Score=31.53 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=29.6
Q ss_pred hHHHHHHHHH-------HHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003228 525 AVNEELQRIE-------AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKID 573 (837)
Q Consensus 525 ~v~eEL~RlE-------AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~ 573 (837)
.+.+|+.|.+ .|.++++-.++|.+|++ +|+-|-..+-.+|....
T Consensus 81 ~fr~Ev~r~~e~~~g~~ie~~~e~eaaE~~el~a-----~N~a~N~~~~~~R~~Rl 131 (227)
T KOG4691|consen 81 EFRSEVQRVHEARAGVLIERKAEKEAAEHRELMA-----WNQAENRRLHELRIARL 131 (227)
T ss_pred HHHHHHHHHHhhcchhHHHhhhhhHHHHHHHHHH-----HhHHHHHHHHHHHHHHH
Confidence 4667777754 46666666667777775 57888877777765443
No 110
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.31 E-value=5.6e+02 Score=31.35 Aligned_cols=127 Identities=20% Similarity=0.128 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHH
Q 003228 575 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQ 654 (837)
Q Consensus 575 vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q 654 (837)
=...|+.....++--+...++.+..+=+|-...|.|.+.|..-..++--+++. . .|+.+ -++++..+.+.-.+
T Consensus 274 D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~---Q--~iS~~--dve~mn~Er~~l~r 346 (581)
T KOG0995|consen 274 DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL---Q--GISGE--DVERMNLERNKLKR 346 (581)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--CCCHH--HHHHHHHHHHHHHH
Confidence 34556777777777777888888888888888888888765433333333221 1 33332 24445555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEc
Q 003228 655 EIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVD 708 (837)
Q Consensus 655 ~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd 708 (837)
.+.+.+++++...+-+-=+-.-+++=++-..-...-+-...+|-...++..-++
T Consensus 347 ~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 347 ELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN 400 (581)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666655554433333333434444445555666677766665555555
No 111
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.08 E-value=5.3e+02 Score=31.01 Aligned_cols=16 Identities=6% Similarity=0.403 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 003228 549 LVAEVEKEINESFEKE 564 (837)
Q Consensus 549 l~~~~~~di~~~f~~e 564 (837)
+++++++|++.+|...
T Consensus 183 ~~~~L~~dl~~~~~~~ 198 (650)
T TIGR03185 183 LIDRLAGDLTNVLRRR 198 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4777788888877643
No 112
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=49.68 E-value=1e+02 Score=34.43 Aligned_cols=84 Identities=23% Similarity=0.444 Sum_probs=60.0
Q ss_pred HHHhh-hHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhH
Q 003228 541 NAVSE-HSALVAEVEKEINESFEKE-LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLR 618 (837)
Q Consensus 541 ~av~~-~~~l~~~~~~di~~~f~~e-l~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr 618 (837)
.||.+ +.--+-.++.+||+-+-.| |+--|-| +|++++|.+.++--.-..+++ .|-++|-.|-+|.++..++|
T Consensus 81 dav~GP~INSL~~lQq~vn~aY~sEv~kL~~~~---~ERn~~Er~~~iTt~~qq~ee---~Le~k~~~is~qL~~~~~~r 154 (385)
T PF15642_consen 81 DAVLGPKINSLTELQQKVNGAYGSEVIKLDRGR---SERNHEERRKKITTSHQQHEE---ALEKKKEDISRQLQVIPKHR 154 (385)
T ss_pred hhhcCcccchHHHHHHHHHhhhhHHHHHHHHhH---HHhhHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHhcchhhh
Confidence 34444 3344556788999999877 5554443 688888888877666655554 45678888889999888888
Q ss_pred HHHHHHHHHhhh
Q 003228 619 REVEEQLESLMS 630 (837)
Q Consensus 619 ~EVde~~q~L~s 630 (837)
-|+-.+++-|+.
T Consensus 155 ~EL~~~~~~l~~ 166 (385)
T PF15642_consen 155 VELKQKQDDLTK 166 (385)
T ss_pred HHHHHHHHHHHH
Confidence 888777776654
No 113
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=49.68 E-value=1.4e+02 Score=30.49 Aligned_cols=50 Identities=12% Similarity=0.338 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH
Q 003228 574 VVEKMAEEARQELERLRAE-REVDKIALMKERAAIESEMEILSKLRREVEEQL 625 (837)
Q Consensus 574 ~vek~~eea~~eLe~~r~e-re~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 625 (837)
+.|+.+.+|+.|..+++.+ |++-.++...+|+++|.+-- .-|.+|+.+|.
T Consensus 66 ~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~--~~~~~~~~~~~ 116 (155)
T PRK06569 66 YYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK--NSINQNIEDIN 116 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3556667777788888877 77777888888888876543 33556666664
No 114
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=49.60 E-value=52 Score=38.43 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhhhcccccch
Q 003228 651 NENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSV 730 (837)
Q Consensus 651 ~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~ 730 (837)
.-.-+..++-..||-|.|||+- +-|-. .+ -||.- .|+- -+-|++..++-++-++..+.+.|
T Consensus 183 QLRre~V~lentlEQEqEalvN-~LwKr-----md----kLe~e-kr~L--------q~KlDqpvs~p~~prdia~~~~~ 243 (552)
T KOG2129|consen 183 QLRREAVQLENTLEQEQEALVN-SLWKR-----MD----KLEQE-KRYL--------QKKLDQPVSTPSLPRDIAKIPDV 243 (552)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH-HHHHH-----HH----HHHHH-HHHH--------HHHhcCcccCCCchhhhhcCccc
Confidence 3334566677778888888753 45531 11 12111 1111 11245666777777887777776
Q ss_pred HHH
Q 003228 731 DQT 733 (837)
Q Consensus 731 ~~~ 733 (837)
.+-
T Consensus 244 ~gD 246 (552)
T KOG2129|consen 244 HGD 246 (552)
T ss_pred cCc
Confidence 653
No 115
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=49.55 E-value=1.8e+02 Score=32.24 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003228 654 QEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALE 692 (837)
Q Consensus 654 q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLE 692 (837)
.....+-.++++..+-|+.-.-|.++|.+++.+....|-
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~ 236 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLR 236 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556777777788887899999999888776653
No 116
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.39 E-value=7.7e+02 Score=32.72 Aligned_cols=80 Identities=28% Similarity=0.310 Sum_probs=40.7
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 003228 611 MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKA 690 (837)
Q Consensus 611 ~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~v 690 (837)
.+++..++++.|+++..|--+-.-|..|+..+ ++++.-....+.++++++.+=..=|.|+-.-.++.-++.-+--.-
T Consensus 453 ~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~---ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~ 529 (1293)
T KOG0996|consen 453 EELLEKEERELDEILDSLKQETEGIREEIEKL---EKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGK 529 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666655555555544433 334444444455555555554444555555555555554444444
Q ss_pred HHH
Q 003228 691 LEG 693 (837)
Q Consensus 691 LEe 693 (837)
|+.
T Consensus 530 L~~ 532 (1293)
T KOG0996|consen 530 LLA 532 (1293)
T ss_pred HHH
Confidence 444
No 117
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=49.10 E-value=3.9e+02 Score=29.13 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 639 KERINMLRKEAENENQEIARLQYELE 664 (837)
Q Consensus 639 k~~l~kL~~~~e~~~q~i~~~k~~LE 664 (837)
+..+..++.++..-..++.+++..++
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 118
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.66 E-value=1e+02 Score=36.80 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=37.3
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHH
Q 003228 601 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENE 652 (837)
Q Consensus 601 lKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~ 652 (837)
+|-=+++..-++.|-.|+.|...+.+.+.+-+-++..+++.++....+++.-
T Consensus 208 ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 208 IKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3433455566667778888888888888888777888887777777777653
No 119
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=48.05 E-value=1.6e+02 Score=34.40 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhHHHh
Q 003228 641 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKR--AREQAKALEGARDRWE 699 (837)
Q Consensus 641 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r--~~e~A~vLEea~~rW~ 699 (837)
++-.|+.+.-..+++-..-+-+-.++||++.-.|.=++.|+++ .+||++..+++++|-+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
T PRK00247 321 RAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRA 381 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5666666666667777777777789999999999999999988 7778888888777653
No 120
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.71 E-value=7.7e+02 Score=32.20 Aligned_cols=143 Identities=16% Similarity=0.225 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHH-HHhHHHHhhh----HHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHH
Q 003228 524 DAVNEELQRIEAE-SAAENAVSEH----SAL---VAEVEKEINESFEKELSMEREKIDVVEK---MAEEARQELERLRAE 592 (837)
Q Consensus 524 e~v~eEL~RlEAE-~~a~~av~~~----~~l---~~~~~~di~~~f~~el~~Er~~~~~vek---~~eea~~eLe~~r~e 592 (837)
.....||--|+++ ..-+.....- .-| ...+++|+.++-+.+....+.+-.+.-+ .|++...|+..++.+
T Consensus 177 l~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~ 256 (1072)
T KOG0979|consen 177 LQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQA 256 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHH
Confidence 3455666666633 3333333321 122 3344889988887766555443332212 155566677766665
Q ss_pred HH---HHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 593 RE---VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA 669 (837)
Q Consensus 593 re---~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkA 669 (837)
+. ++.-.+.|+..-++|-++.|-+.++|.+..+..+.++ +-.=..++++....+...++.+.+++..||.=|++
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~---~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~ 333 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE---LNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKA 333 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 3445789999999999999999888888877666543 22234567777777777888888888888765544
No 121
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=47.58 E-value=3.2e+02 Score=29.31 Aligned_cols=96 Identities=23% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHH-HHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 595 VDKIALMKERAAIESE-MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 673 (837)
Q Consensus 595 ~e~~~llKerAa~e~e-~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~ 673 (837)
+++..++||||.||.+ -.-|.+|-....+ ..++-.=+.-++.++.+++..-..=..+...|..+-+-|.-.
T Consensus 22 ~el~~f~keRa~iE~~Yak~L~kl~kk~~~--------~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~l~~f 93 (242)
T cd07671 22 KDVEELLKQRAQAEERYGKELVQIARKAGG--------QTEINTLKASFDQLKQQIENIGNSHIQLAGMLREELKSLEEF 93 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHhhc
Q 003228 674 RAWAEDEAKRAREQAKALEGARDRWERQ 701 (837)
Q Consensus 674 R~W~EdEA~r~~e~A~vLEea~~rW~~~ 701 (837)
+.|-.++-|+.. -..+.+...|..+
T Consensus 94 ~~~qke~rK~~e---~~~eK~qk~~~~~ 118 (242)
T cd07671 94 RERQKEQRKKYE---AVMERVQKSKVSL 118 (242)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHH
No 122
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=47.23 E-value=4.9e+02 Score=29.87 Aligned_cols=50 Identities=32% Similarity=0.442 Sum_probs=40.6
Q ss_pred HHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003228 623 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 679 (837)
Q Consensus 623 e~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~Ed 679 (837)
+|++.|++-++ +.-=++.++||+++++..++++..++..+.. |.--|.+|
T Consensus 375 ~q~~yLL~m~L-~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~------~~~l~~~d 424 (426)
T PF00521_consen 375 EQADYLLSMPL-RRLTKEEIEKLQKEIKELEKEIEELEKILPK------IKDLWKKD 424 (426)
T ss_dssp HHHHHHHTSBG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHHHH
T ss_pred HHHHHHHhchH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 88999998888 4444688899999999999999999998877 55566654
No 123
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.00 E-value=2.1e+02 Score=35.05 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 635 ISYEKERINMLRKEAENENQEIARLQYELEVER 667 (837)
Q Consensus 635 i~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 667 (837)
|-.=..++.+|..+++++...+.+|+-.|+-=+
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333356788888888888888888888776544
No 124
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=47.00 E-value=2.2e+02 Score=34.22 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=33.2
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 611 MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (837)
Q Consensus 611 ~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 671 (837)
++-+..++.-|++.-+.=...=..+..=++.+++|.++++.+.+.+..++.+|+.+++.+.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444455555554444211111223344556677777777777777777777776666543
No 125
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.62 E-value=1.5e+02 Score=38.17 Aligned_cols=77 Identities=29% Similarity=0.384 Sum_probs=51.0
Q ss_pred HHHHhHHHHHHHHHHhhh-cceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHH
Q 003228 613 ILSKLRREVEEQLESLMS-NKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE---AKRAREQA 688 (837)
Q Consensus 613 ~L~~Lr~EVde~~q~L~s-~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdE---A~r~~e~A 688 (837)
+...||+|||.....|.+ ++.+.-.=+++++++.+-++. |--+|-|.= -.-.+||.
T Consensus 365 virElReEve~lr~qL~~ae~~~~~el~e~l~esekli~e--------------------i~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 365 VIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKE--------------------ITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH--------------------HHhHHHHHHHHHHHHHHHHH
Confidence 456689999999988887 555555555555555444332 222332211 12357888
Q ss_pred HHHHHHhHHHhhcCcEEEEcC
Q 003228 689 KALEGARDRWERQGIKVVVDK 709 (837)
Q Consensus 689 ~vLEea~~rW~~~gikv~vd~ 709 (837)
+-||.++....--||||-=|+
T Consensus 425 ~~L~~~gis~~~sgikv~dDK 445 (1714)
T KOG0241|consen 425 AQLESMGISLENSGIKVGDDK 445 (1714)
T ss_pred HHHHHHHHHHhcccccccccc
Confidence 999999999999999986655
No 126
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=45.57 E-value=4.1e+02 Score=28.44 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhh----cceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 595 VDKIALMKERAAIESEMEILSKLRREVEEQLESLMS----NKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 670 (837)
Q Consensus 595 ~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s----~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL 670 (837)
+++..++||||+|| .+---+|..|+. ...++-.=+.-++.++.+++.--..=..+...|.-|-+.|
T Consensus 22 ~el~~f~kERA~IE----------~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~ 91 (240)
T cd07672 22 KEFEDFLKERASIE----------EKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKM 91 (240)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHHHhhc
Q 003228 671 SMARAWAEDEAKRAREQAKALEGARDRWERQ 701 (837)
Q Consensus 671 ~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~ 701 (837)
.-.+.|-.++-++... ..+.+...|..+
T Consensus 92 ~~f~~~qk~~rKk~e~---~~ek~~K~~~~~ 119 (240)
T cd07672 92 EDFRERQKLARKKIEL---IMDAIHKQRAMQ 119 (240)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
No 127
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.54 E-value=6e+02 Score=30.34 Aligned_cols=19 Identities=0% Similarity=-0.169 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHhcchhh
Q 003228 506 KPVTNAQAAVALAIGEASD 524 (837)
Q Consensus 506 kPVTRAEAAAaL~sG~~~e 524 (837)
..-+|.|-+++..+..|=|
T Consensus 245 ~SrlkqEnlqLvhR~h~LE 263 (502)
T KOG0982|consen 245 SSRLKQENLQLVHRYHMLE 263 (502)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3457888888888877644
No 128
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.06 E-value=9.5e+02 Score=32.51 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 003228 637 YEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGAR 695 (837)
Q Consensus 637 ~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~ 695 (837)
.-++.+.++..+++.-.+++..++..+..-..++..+ +.++..-+.....|+.|.
T Consensus 373 eleeeleeleeEleelEeeLeeLqeqLaelqqel~el----Q~el~q~qq~i~~Le~~~ 427 (1486)
T PRK04863 373 EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQ----QTRAIQYQQAVQALERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3344444455555544555555544444333333333 334444444555555553
No 129
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=44.96 E-value=7.5e+02 Score=31.26 Aligned_cols=245 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 003228 534 EAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDV-------VEKMAEEARQELERLRAEREVDKIALMKERAA 606 (837)
Q Consensus 534 EAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~-------vek~~eea~~eLe~~r~ere~e~~~llKerAa 606 (837)
|.|++-+......+.|-.-. .+|+.||..+++.||....+ ....|.....|+++...+.+.--..| |-+.-
T Consensus 11 E~e~L~~ele~~~~~l~~~~-~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e 88 (775)
T PF10174_consen 11 ENERLRRELERKQSKLGSSM-NSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRE 88 (775)
T ss_pred HHHHHHHHHHHHHhHHHHHH-HhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhH
Q ss_pred HHHHHHHHHHhHHHHH---------HHHHHhhhcceehhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 003228 607 IESEMEILSKLRREVE---------EQLESLMSNKVEISYE----KERINMLRKEAENENQEIARLQYELEVERKAL--- 670 (837)
Q Consensus 607 ~e~e~q~L~~Lr~EVd---------e~~q~L~s~~~ei~~E----k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL--- 670 (837)
+..=.+-|.+-..+.+ +++.+|-.++=....| +..+++++..++.-++.+.....+++-=.++|
T Consensus 89 ~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~ 168 (775)
T PF10174_consen 89 LNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSK 168 (775)
T ss_pred HHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred -----------HHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEE---------EEcCCccccccccchhhhcccccch
Q 003228 671 -----------SMARAWAEDEAKRAREQAKALEGARDRWERQGIKV---------VVDKDLREESDAAVMWVNAGKQFSV 730 (837)
Q Consensus 671 -----------~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv---------~vd~~~~~~~~~~~~w~~~~~~~~~ 730 (837)
.|.+.-++.|+...+ |+....+|++..-.+ ...++-.-.+.--+.=.-..+..++
T Consensus 169 g~~~~~~~~~~~~~~~~~~~e~~~~~-----le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~l 243 (775)
T PF10174_consen 169 GLSAEAEEEDNEALRRIREAEARIMR-----LESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASL 243 (775)
T ss_pred CCcccchhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003228 731 DQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAE 786 (837)
Q Consensus 731 ~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~ 786 (837)
+..+..+++=|..|+.=...... -|+-+..=+.--..-.-.+|.++-.+.....+
T Consensus 244 Er~l~~le~Ei~~L~~~~~~~~~-~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~r 298 (775)
T PF10174_consen 244 ERMLRDLEDEIYRLRSRGELSEA-DRDRLDKQLEVYKSHSLAMKSKMDRLKLELSR 298 (775)
T ss_pred HHHHHHHHHHHHHHHhccccccc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 130
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.59 E-value=6.2e+02 Score=30.23 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=4.3
Q ss_pred HHHHHHhHHH
Q 003228 689 KALEGARDRW 698 (837)
Q Consensus 689 ~vLEea~~rW 698 (837)
++||+-.++.
T Consensus 121 ~ile~k~~~f 130 (475)
T PRK10361 121 RIFEHSNRRV 130 (475)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 131
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.39 E-value=6.2e+02 Score=30.19 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 604 RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 664 (837)
Q Consensus 604 rAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE 664 (837)
|+.|+.=+--|.+-..+--+-+++++-+++-+--|-.|+|.++..-=.+.+++++.-++-|
T Consensus 259 ~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESE 319 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5566666666666666667777777777777777777777655544445566666554433
No 132
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=44.01 E-value=2.9e+02 Score=26.23 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=3.1
Q ss_pred hhhhhhhh
Q 003228 818 KRVAGDCR 825 (837)
Q Consensus 818 kr~~~~c~ 825 (837)
.+++++..
T Consensus 187 ~~~~~~~~ 194 (202)
T PF01442_consen 187 DRISEDIE 194 (202)
T ss_dssp CCHHHHHH
T ss_pred HHHHHHHH
Confidence 33443333
No 133
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=43.68 E-value=3.4e+02 Score=29.39 Aligned_cols=10 Identities=20% Similarity=-0.024 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q 003228 353 REYARWLVSA 362 (837)
Q Consensus 353 AEFArwLVRA 362 (837)
.|-.+++-+|
T Consensus 39 ~e~~~A~~~A 48 (297)
T PF02841_consen 39 AENRAAVEKA 48 (297)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 134
>PF14992 TMCO5: TMCO5 family
Probab=42.37 E-value=4.3e+02 Score=29.60 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHhHHHHHHHHHHhhhcce----ehhHHHHHHHHHHHHHHHHHHHHH
Q 003228 586 LERLRAEREVDKIALMKERAAIESEMEIL----SKLRREVEEQLESLMSNKV----EISYEKERINMLRKEAENENQEIA 657 (837)
Q Consensus 586 Le~~r~ere~e~~~llKerAa~e~e~q~L----~~Lr~EVde~~q~L~s~~~----ei~~Ek~~l~kL~~~~e~~~q~i~ 657 (837)
+...-.+++.++-.|-.+.|-+|.+++.| ..|.++++++...+-.++- ..-.=+.++|+++..+......+.
T Consensus 54 e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~ 133 (280)
T PF14992_consen 54 EDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIA 133 (280)
T ss_pred HhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHH
Confidence 33334467777777778889999999999 8999999999888644432 122224788899988888888887
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 003228 658 RLQYELEVERKALSMARAWA 677 (837)
Q Consensus 658 ~~k~~LE~EkkAL~m~R~W~ 677 (837)
.+.+...--.....=+..|+
T Consensus 134 kve~d~~~v~~l~eDq~~~i 153 (280)
T PF14992_consen 134 KVEDDYQQVHQLCEDQANEI 153 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77654433333333333343
No 135
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=40.93 E-value=3.7e+02 Score=26.52 Aligned_cols=80 Identities=30% Similarity=0.483 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 003228 549 LVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 628 (837)
Q Consensus 549 l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 628 (837)
+.++.+.+.++...+- +++....++..++.+..+++..+. |..-.+.+-..+.-+....+++..+..+|-+.|..+
T Consensus 13 I~~eA~~e~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L~~~ 88 (198)
T PF01991_consen 13 IIAEAQEEAEKILEEA---EEEAEKEIEEIIEKAEKEAEQEKE-REISKAELEARRELLEAKQEIIDEVFEEVKEKLKSF 88 (198)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554445554444432 223333345555555666555544 233334444555677777788888888887777777
Q ss_pred hhcc
Q 003228 629 MSNK 632 (837)
Q Consensus 629 ~s~~ 632 (837)
....
T Consensus 89 ~~~~ 92 (198)
T PF01991_consen 89 SKDP 92 (198)
T ss_dssp TCCC
T ss_pred hcCH
Confidence 6665
No 136
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=40.90 E-value=9.6e+02 Score=31.39 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 003228 583 RQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 631 (837)
Q Consensus 583 ~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~ 631 (837)
...+-++|.+-+.+...+...++.+|.+...|...+.|++.....+.-.
T Consensus 673 ~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~~I~~ 721 (1072)
T KOG0979|consen 673 LKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAASEAKKILD 721 (1072)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666888899999999999999999999887766543
No 137
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=40.67 E-value=9.6e+02 Score=31.30 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=11.7
Q ss_pred CCCCcCcHHHHHHHHHH
Q 003228 430 LPESPLSRQDLVSWKMA 446 (837)
Q Consensus 430 rPDsPITRQELAvwkVA 446 (837)
.|...+-+.++..|+..
T Consensus 218 ~~~~~~~~~~i~~W~~~ 234 (1201)
T PF12128_consen 218 PPKSRLKKNDIDDWLRD 234 (1201)
T ss_pred chhhhcchhhHHHHHHH
Confidence 35555777888888753
No 138
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.58 E-value=4.2e+02 Score=27.42 Aligned_cols=48 Identities=27% Similarity=0.415 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHh
Q 003228 645 LRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 699 (837)
Q Consensus 645 L~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~ 699 (837)
|+.+++.-.+++.+++.+|+ -.+.|=-+.-.+.++....+-+|-.||.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~-------~~~~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE-------KYSENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555544 3344555555666667777778888886
No 139
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=40.43 E-value=8.6e+02 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=13.0
Q ss_pred HHHHHhHHHHHHHHHHhhhhcc
Q 003228 731 DQTVSRAQSLVDKLKAMANDVS 752 (837)
Q Consensus 731 ~~~~~ra~~l~~k~~~m~~~~~ 752 (837)
.......+-|+.+|..|-...+
T Consensus 254 ~~~~~~~~~l~~~l~~~eeEnk 275 (769)
T PF05911_consen 254 QKRSKESEFLTERLQAMEEENK 275 (769)
T ss_pred ccchhhhHHHHHHHHHHHHHHH
Confidence 4445555677777776655443
No 140
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=40.33 E-value=7.2e+02 Score=29.79 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=13.5
Q ss_pred ccccCcCcchHHHHHHHHhcCcccc
Q 003228 467 IDIDKINPDAWPALLADLTAGEQGI 491 (837)
Q Consensus 467 ~DadkIspwA~~AVaadL~aGd~GI 491 (837)
.|.+-+...+.+.|...|.....||
T Consensus 119 ~~~~~~~~~Y~~~v~~~l~~~k~Gl 143 (489)
T PF05262_consen 119 GDLDYFKKKYKNVVIKNLTPEKAGL 143 (489)
T ss_pred CCHHHHHHHhhHHHHhhcChhhccc
Confidence 3555555555666655555544444
No 141
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=40.12 E-value=1.6e+02 Score=29.02 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhh
Q 003228 643 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWV 722 (837)
Q Consensus 643 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~ 722 (837)
..-..++-.-+.++.++...+..+..+ ++.|.+.+++.-+.+-+.|+..-..|-.....--..+-.-+-...-+.|+
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~---i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~~k~Ks~~l~~G~v~~R 82 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIAR---IKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDELTKKKSLKLPFGTVGFR 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-----EE-SS-EE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhcccceEEEcCCeeEEEE
Confidence 334445555556666666666666554 47899999999999999999999999865542222333344556778888
Q ss_pred hcccccchHHHHHhHHHHHHHHHHh
Q 003228 723 NAGKQFSVDQTVSRAQSLVDKLKAM 747 (837)
Q Consensus 723 ~~~~~~~~~~~~~ra~~l~~k~~~m 747 (837)
.......+. --+.|++.||.+
T Consensus 83 ~~~~~~~~~----~~~~vl~~Lk~~ 103 (149)
T PF07352_consen 83 KSTPKVKVR----DEEKVLEWLKEN 103 (149)
T ss_dssp --------T-----HHHHHHHHHHC
T ss_pred ecCCcccCC----CHHHHHHHHHHc
Confidence 777666541 456788888776
No 142
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=39.55 E-value=7.3e+02 Score=29.58 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhh--------hHHHHHHHHHHHh
Q 003228 548 ALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDK--IALMKER--------AAIESEMEILSKL 617 (837)
Q Consensus 548 ~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~--~~llKer--------Aa~e~e~q~L~~L 617 (837)
+-+..+...|...++ -|..|..-...|++........|...+..-..-. ...|+++ ..+..=.+-|..|
T Consensus 282 ~~~~~i~~~Id~Lyd-~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~L 360 (569)
T PRK04778 282 EKNEEIQERIDQLYD-ILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESL 360 (569)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHH
Confidence 344455667765554 4555655555566655555555544444222222 2223332 1122333447778
Q ss_pred HHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHH
Q 003228 618 RREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIA 657 (837)
Q Consensus 618 r~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~ 657 (837)
...+++..+.+....+.|+.=++++++|.++++.=.....
T Consensus 361 e~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ 400 (569)
T PRK04778 361 EKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQE 400 (569)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888777777777666544333333
No 143
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=39.54 E-value=3e+02 Score=31.69 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=47.6
Q ss_pred hhcceehhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcE
Q 003228 629 MSNKVEISYEKERINMLRKEAENEN----QEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIK 704 (837)
Q Consensus 629 ~s~~~ei~~Ek~~l~kL~~~~e~~~----q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gik 704 (837)
-.+|...+|+-+.|...+.+.+... -+-.++-+++|++|-+.++|..-.+.=-.--+.|-..||+ +|..
T Consensus 139 DNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee-------~Gl~ 211 (405)
T KOG2010|consen 139 DNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE-------HGLV 211 (405)
T ss_pred cccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCeE
Confidence 3567777777666655555544433 3345677899999999999975444322223334455655 8887
Q ss_pred EEEcCCcc
Q 003228 705 VVVDKDLR 712 (837)
Q Consensus 705 v~vd~~~~ 712 (837)
++-++--.
T Consensus 212 ~I~~~t~~ 219 (405)
T KOG2010|consen 212 IIPDGTPN 219 (405)
T ss_pred eccCCCCC
Confidence 77665433
No 144
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.26 E-value=7.5e+02 Score=29.68 Aligned_cols=35 Identities=37% Similarity=0.365 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003228 659 LQYELEVERKALSMARAWAEDEAKRAREQAKALEG 693 (837)
Q Consensus 659 ~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEe 693 (837)
||+.-|+|.+=+.+-|.=+|.+-+-++|-|.-|..
T Consensus 341 Lq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 341 LQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45666778888888899898888888777765544
No 145
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.24 E-value=1.1e+02 Score=34.19 Aligned_cols=62 Identities=29% Similarity=0.432 Sum_probs=0.0
Q ss_pred hhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 003228 628 LMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARD 696 (837)
Q Consensus 628 L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~ 696 (837)
|--..|-|-.=|-+|-.-...++..--+|.+||+.|- +|=-.|+|+|.-|+.++- +|.|||.
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~------RMrEDWIEEECHRVEAQL-ALKEARk 124 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLA------RMREDWIEEECHRVEAQL-ALKEARK 124 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHH
No 146
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.11 E-value=1.9e+02 Score=33.52 Aligned_cols=39 Identities=13% Similarity=-0.041 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003228 642 INMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE 680 (837)
Q Consensus 642 l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdE 680 (837)
+.++..-+..+..++......|+.+.+.|.--...++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555444444433
No 147
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=38.12 E-value=6.5e+02 Score=29.94 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=18.8
Q ss_pred CCCCCcHHHHHHHHHhcchhhhHH
Q 003228 504 PDKPVTNAQAAVALAIGEASDAVN 527 (837)
Q Consensus 504 PnkPVTRAEAAAaL~sG~~~e~v~ 527 (837)
+....+..++|.....++++++.+
T Consensus 104 ~~~~~~~~~s~~~~~~~~~f~i~~ 127 (447)
T KOG2751|consen 104 SDGSNTKTLSATINVLTRLFDILS 127 (447)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhh
Confidence 556677888888888888888764
No 148
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=37.95 E-value=3.8e+02 Score=25.90 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHH
Q 003228 579 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 658 (837)
Q Consensus 579 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~ 658 (837)
+.+|....+++=.-+-.....|-+=|+.+..-...+..|+.+++..-..|...+.....++..|++=..+++.+.+.+..
T Consensus 40 a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 40 AQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444555555566666677777777777777777777777777777777777777777666654
No 149
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.22 E-value=9.8e+02 Score=30.43 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 616 KLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (837)
Q Consensus 616 ~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 671 (837)
+|-.-|||+||--.-++..-..++++|..-...+.....++..-|--|--.++.|+
T Consensus 195 rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr 250 (916)
T KOG0249|consen 195 RLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLR 250 (916)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45566677766555555555555555544444444444444444444444444443
No 150
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.21 E-value=1.1e+03 Score=30.99 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhh
Q 003228 607 IESEMEILSKLRREVEEQLESLMS 630 (837)
Q Consensus 607 ~e~e~q~L~~Lr~EVde~~q~L~s 630 (837)
|..-.+-+..|+..|++....+..
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~~ 817 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQG 817 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455566667777766665553
No 151
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.09 E-value=1.1e+03 Score=30.94 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 003228 754 KSKEIINTIIHKILLFISNLKKW 776 (837)
Q Consensus 754 ~~~~~~~~~~~~i~~~i~~l~~~ 776 (837)
+.+++++.+|+-.+.++..|+.-
T Consensus 625 ~~r~~~~~~~e~~q~~~~~~k~~ 647 (1041)
T KOG0243|consen 625 KDRDILSEVLESLQQLQEVLKKD 647 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 56777888888777777777654
No 152
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.77 E-value=4.8e+02 Score=26.38 Aligned_cols=95 Identities=26% Similarity=0.305 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHH
Q 003228 573 DVVEKMAEEARQELERLRAEREVDKIALMKERAA---IESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 649 (837)
Q Consensus 573 ~~vek~~eea~~eLe~~r~ere~e~~~llKerAa---~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~ 649 (837)
.-++..++.+..||+...+.++.-....-.-|+. ++.|.+.+..=+..+..-|..|.++|-.+.-+=+..+.--+++
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333222223333 3344444444444455556666666666666655555556666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003228 650 ENENQEIARLQYELEVER 667 (837)
Q Consensus 650 e~~~q~i~~~k~~LE~Ek 667 (837)
+..+....++=.++|.|+
T Consensus 100 E~~~~~~~~~l~~~E~ek 117 (140)
T PF10473_consen 100 ESLNSSLENLLQEKEQEK 117 (140)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 666666666666666663
No 153
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=35.57 E-value=8.3e+02 Score=29.09 Aligned_cols=89 Identities=22% Similarity=0.194 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 522 ASDAVNEELQRIEAESAAENAVSEH-SALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIAL 600 (837)
Q Consensus 522 ~~e~v~eEL~RlEAE~~a~~av~~~-~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~l 600 (837)
....+++++.-++||.-|-.|-.+. -..+.+++.|.. .+..||-+.++-+++.-.=..-++++|..-..+.-++
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~-----~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENT-----QLNEERVREEATEKTLTVDVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665555544442 222333444432 2334555555555555444444555554444444444
Q ss_pred hhhhhHHHHHHHHHH
Q 003228 601 MKERAAIESEMEILS 615 (837)
Q Consensus 601 lKerAa~e~e~q~L~ 615 (837)
-+.+|..+.-+-.|.
T Consensus 103 ~~q~~e~~n~~~~l~ 117 (459)
T KOG0288|consen 103 REQKAEFENAELALR 117 (459)
T ss_pred HHhhhhhccchhhHH
Confidence 444444444333333
No 154
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=35.04 E-value=9.2e+02 Score=30.04 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=14.3
Q ss_pred CCCcHHHH-HHHHHhcchhhhHHHHHHHHH
Q 003228 506 KPVTNAQA-AVALAIGEASDAVNEELQRIE 534 (837)
Q Consensus 506 kPVTRAEA-AAaL~sG~~~e~v~eEL~RlE 534 (837)
..+...+. ..++..-.--+.++-||.+..
T Consensus 309 ~~L~~~dln~liahah~rvdql~~~l~d~k 338 (657)
T KOG1854|consen 309 ENLSEDDLNKLIAHAHTRVDQLQKELEDQK 338 (657)
T ss_pred hhccHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555 333334444555666665544
No 155
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=34.77 E-value=4e+02 Score=27.29 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhH----HHhhcCcEEEEcCCc
Q 003228 684 AREQAKALEGARD----RWERQGIKVVVDKDL 711 (837)
Q Consensus 684 ~~e~A~vLEea~~----rW~~~gikv~vd~~~ 711 (837)
..+..+++++.-+ .-+.+|+.+|+|...
T Consensus 118 ~e~~~~~~~~i~~ai~~~a~~~gy~~vl~~~~ 149 (170)
T COG2825 118 AEEEQKLLEKIQRAIESVAEKGGYSLVLDSNA 149 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcceEecCCc
Confidence 3344444444322 566899999998753
No 156
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=34.64 E-value=5.5e+02 Score=27.86 Aligned_cols=14 Identities=14% Similarity=-0.083 Sum_probs=6.1
Q ss_pred CccHHHHHHHHHHh
Q 003228 349 LCIRREYARWLVSA 362 (837)
Q Consensus 349 pITRAEFArwLVRA 362 (837)
+||=..|+.++-..
T Consensus 4 ~vtG~~L~~L~~~Y 17 (297)
T PF02841_consen 4 TVTGPMLAELVKSY 17 (297)
T ss_dssp B-BHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH
Confidence 44445555444433
No 157
>PRK10404 hypothetical protein; Provisional
Probab=34.54 E-value=1.9e+02 Score=27.42 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=37.1
Q ss_pred cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003228 726 KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMR 783 (837)
Q Consensus 726 ~~~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~ 783 (837)
+++.-+....--+.|++-++.|.......+.+-+..+-.++...+...|.+.+++...
T Consensus 3 ~~~~~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 3 NQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455555555556777777777666666666666666666666666666666555443
No 158
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=34.43 E-value=4.8e+02 Score=29.47 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHh----hhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 605 AAIESEMEILSKLRREVEEQLESL----MSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA 669 (837)
Q Consensus 605 Aa~e~e~q~L~~Lr~EVde~~q~L----~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkA 669 (837)
++|..|++-|+.....++-.-|+| ...-..|.+=...|....+.++.-.+++.++|++||-=..+
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666655555554444433 33445555556666777777777777777777777744333
No 159
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=34.38 E-value=1.6e+02 Score=26.92 Aligned_cols=98 Identities=9% Similarity=0.157 Sum_probs=40.0
Q ss_pred HHHHHhHHHHHHHHHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 003228 731 DQTVSRAQSLVDKLKAMANDVS-GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEF 809 (837)
Q Consensus 731 ~~~~~ra~~l~~k~~~m~~~~~-~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (837)
+..+..-.+-++-.+.++.++. ...+.++.++++.=..++..|...+.+.+-...+-+.. ...+......+
T Consensus 7 n~Ll~~~~d~~~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~--------~g~~~r~~~~i 78 (111)
T PF09537_consen 7 NDLLKGLHDGIEGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSF--------KGALHRAWMDI 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HH--------CHHHH-TTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCH--------HHHHHHHHHHH
Confidence 3444444455555666666666 66777777777777777888887777777555433222 12233333455
Q ss_pred hhhhcccchh-hhhhhhhhHHhhhhhcc
Q 003228 810 RSNLTEGAKR-VAGDCREGVEKLTQRFK 836 (837)
Q Consensus 810 ~~~~~~~~kr-~~~~c~~gv~k~~~rfk 836 (837)
.+.+..+... +.+.|..|=.++-+.|+
T Consensus 79 k~~~~~~d~~aiL~~~~~gE~~~~~~y~ 106 (111)
T PF09537_consen 79 KSALGGDDDEAILEECERGEDMALEAYE 106 (111)
T ss_dssp HHS-----H-------------------
T ss_pred HHHhcCCCccchhhhhhhhhhhhhhhcc
Confidence 5555555554 88899888888777775
No 160
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=34.35 E-value=3.9e+02 Score=26.26 Aligned_cols=51 Identities=31% Similarity=0.442 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 003228 579 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 631 (837)
Q Consensus 579 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~ 631 (837)
=+||..|.+.-|..||++.- .|+.+++=++-.+-.++..+++..++.|-+.
T Consensus 37 KeEA~~Eie~yr~qrE~efk--~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~ 87 (108)
T KOG1772|consen 37 KEEAEKEIEEYRSQREKEFK--EKESAASGSQGALEKRLEQETDDKIAGLKTS 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 36778889999999988875 4678888888899999999999988877554
No 161
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=34.03 E-value=1e+03 Score=29.59 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=44.5
Q ss_pred HHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003228 622 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 693 (837)
Q Consensus 622 de~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEe 693 (837)
+..-+.|...+-+...-++.+.++..+++...+.+-.++..|+...+-|.--. +.+..|.+-|.+++|-
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~---~e~~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK---KEKEERRKLHNEILEL 312 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 33333444444444555666777777777777777777888877777665444 4445566778888886
No 162
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=33.94 E-value=6.1e+02 Score=29.08 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHh------hHHHHHHHHHHHHH
Q 003228 559 ESFEKELSMERE------KIDVVEKMAEEARQ 584 (837)
Q Consensus 559 ~~f~~el~~Er~------~~~~vek~~eea~~ 584 (837)
--|++.+++-|. +-+++||+-+.+.+
T Consensus 50 dk~deqiKaKkkLmV~aKkheaL~kl~eSaeq 81 (421)
T KOG4429|consen 50 DKKDEQIKAKKKLMVLAKKHEALEKLEESAEQ 81 (421)
T ss_pred hhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 368888888774 44566666655543
No 163
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=33.83 E-value=8.7e+02 Score=28.80 Aligned_cols=157 Identities=28% Similarity=0.360 Sum_probs=78.1
Q ss_pred CcHHHHHHHHH--hcchhhhHHHHHHHHHHHHHhH-H----HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-
Q 003228 508 VTNAQAAVALA--IGEASDAVNEELQRIEAESAAE-N----AVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA- 579 (837)
Q Consensus 508 VTRAEAAAaL~--sG~~~e~v~eEL~RlEAE~~a~-~----av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~- 579 (837)
+++++-|+... .+..-+.+..||.++-..-..- . |.-....++.+...|+ ..|..+|..=+++...+.+.+
T Consensus 157 ~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~-~~~~~~leeae~~l~~L~~e~~ 235 (522)
T PF05701_consen 157 LKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDA-EEWEKELEEAEEELEELKEELE 235 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444 6666677777877776443321 1 1111233333334444 367666544444444443333
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHH
Q 003228 580 ---------EEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAE 650 (837)
Q Consensus 580 ---------eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e 650 (837)
..+..++..|+.+-..-...-+.+ .. ..+.....+...|.+-+.+.-.=+.+|++...++.
T Consensus 236 ~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~--------~~--~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~ 305 (522)
T PF05701_consen 236 AAKDLESKLAEASAELESLQAELEAAKESKLEE--------EA--EAKEKSSELQSSLASAKKELEEAKKELEKAKEEAS 305 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hH--HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222211111111111 00 23333334444455555555556667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 651 NENQEIARLQYELEVERKALSMARA 675 (837)
Q Consensus 651 ~~~q~i~~~k~~LE~EkkAL~m~R~ 675 (837)
.=+..+.-|+.+|+-+|..|.-+|-
T Consensus 306 ~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 306 SLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777664
No 164
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.76 E-value=6.4e+02 Score=27.23 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 592 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (837)
Q Consensus 592 ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 671 (837)
+=++-+..++++=..++.+-..|..++.|.+..++ |+.+..+-+.++..+...|..+-..++.|+..
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~-----------Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~-- 78 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQ-----------ERMAHVEELRQINQDINTLENIIKQAESERNK-- 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44566678888888899999999888888877654 44444444445555544444444444444433
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 003228 672 MARAWAEDEAKRAREQAKALEGARDRW 698 (837)
Q Consensus 672 m~R~W~EdEA~r~~e~A~vLEea~~rW 698 (837)
..+.+.+.++.-.-|..-.++=
T Consensus 79 -----~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 79 -----RQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444433333
No 165
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=33.74 E-value=3.9e+02 Score=24.78 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhh
Q 003228 559 ESFEKELSMEREKIDVVEKMAEEARQELERLRA--EREVDKIALMKE 603 (837)
Q Consensus 559 ~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~--ere~e~~~llKe 603 (837)
....-|+..+..+.++++|.......|+.+++. .+..+...-|++
T Consensus 34 ~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 34 LRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555666667777777777777777777766 344444455554
No 166
>PRK02224 chromosome segregation protein; Provisional
Probab=33.69 E-value=9.9e+02 Score=29.41 Aligned_cols=6 Identities=33% Similarity=0.828 Sum_probs=2.2
Q ss_pred HHHHHH
Q 003228 529 ELQRIE 534 (837)
Q Consensus 529 EL~RlE 534 (837)
+|..++
T Consensus 385 ~l~~l~ 390 (880)
T PRK02224 385 EIEELE 390 (880)
T ss_pred HHHHHH
Confidence 333333
No 167
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=33.67 E-value=8e+02 Score=31.04 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003228 639 KERINMLRKEAENENQEIAR 658 (837)
Q Consensus 639 k~~l~kL~~~~e~~~q~i~~ 658 (837)
+++|++|..++..+.+.+.+
T Consensus 648 k~KIe~L~~eIkkkIe~av~ 667 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIR 667 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55666666666655555543
No 168
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=33.62 E-value=5e+02 Score=25.98 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 003228 579 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE 626 (837)
Q Consensus 579 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q 626 (837)
|+....|-..+...-++-+.+|++=|...-.-.++|.++|+.......
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~ 91 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSE 91 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555566666666666666667777777666554433
No 169
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.52 E-value=3.4e+02 Score=24.01 Aligned_cols=55 Identities=35% Similarity=0.498 Sum_probs=34.8
Q ss_pred HHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003228 533 IEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA 591 (837)
Q Consensus 533 lEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ 591 (837)
|+||--|.+++..+ |- ++ +.-+..|+.+|..-..+..+++.-....+.+++++|.
T Consensus 6 L~~EirakQ~~~eE--L~-kv-k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 6 LEAEIRAKQAIQEE--LT-KV-KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHH--HH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHH--HH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666666666554 32 23 3444577878777777777777766666777766664
No 170
>PLN03188 kinesin-12 family protein; Provisional
Probab=33.17 E-value=1.4e+03 Score=30.87 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchh
Q 003228 644 MLRKEAENENQEIARLQYELEVERKALSMARAWAEDEA--KRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMW 721 (837)
Q Consensus 644 kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA--~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w 721 (837)
.|+-|+|.-..-..+++.||+.||+.---| +|| +.++=|||.||.--+==++|
T Consensus 1069 elr~eles~r~l~Ekl~~EL~~eK~c~eel-----~~a~q~am~ghar~~e~ya~l~ek~-------------------- 1123 (1320)
T PLN03188 1069 ELRTELDASRALAEKQKHELDTEKRCAEEL-----KEAMQMAMEGHARMLEQYADLEEKH-------------------- 1123 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 567778886677778999999998642222 111 12455777777633222221
Q ss_pred hhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 003228 722 VNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 775 (837)
Q Consensus 722 ~~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~ 775 (837)
..+-.--+|-+.=|+-.|.-|++...|-++ .+||.-+--=||.||-
T Consensus 1124 ------~~ll~~hr~i~egi~dvkkaaakag~kg~~--~~f~~alaae~s~l~~ 1169 (1320)
T PLN03188 1124 ------IQLLARHRRIQEGIDDVKKAAARAGVRGAE--SKFINALAAEISALKV 1169 (1320)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHHH
Confidence 122222233366677777777777776666 6777777777777763
No 171
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=33.16 E-value=8.7e+02 Score=28.60 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhhcccchHH------HHHHHHHHHHHHHH
Q 003228 738 QSLVDKLKAMANDVSGKSKE------IINTIIHKILLFIS 771 (837)
Q Consensus 738 ~~l~~k~~~m~~~~~~~~~~------~~~~~~~~i~~~i~ 771 (837)
..|.++...++..++..++- ++..++.++.+++-
T Consensus 469 ~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l~ 508 (582)
T PF09731_consen 469 AQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLLL 508 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHheee
Confidence 34666666666666543332 45555555544443
No 172
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=32.92 E-value=1.8e+02 Score=28.25 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhh
Q 003228 760 NTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAG 822 (837)
Q Consensus 760 ~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~ 822 (837)
+.++.-+..|++.+-+-....+.-+++=-+...+++...+.+++.+..+-+..+..++|-.++
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~ 73 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAAD 73 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 444444455554443333333333333333445666677777777777777777777766554
No 173
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.70 E-value=2.5e+02 Score=29.72 Aligned_cols=13 Identities=8% Similarity=0.291 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 003228 580 EEARQELERLRAE 592 (837)
Q Consensus 580 eea~~eLe~~r~e 592 (837)
.++..||++++.+
T Consensus 96 p~le~el~~l~~~ 108 (206)
T PRK10884 96 PDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3445666666543
No 174
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.63 E-value=6.5e+02 Score=31.17 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=12.9
Q ss_pred ccCCCCCccHHHHHHHHHH
Q 003228 343 DVKPGDLCIRREYARWLVS 361 (837)
Q Consensus 343 tF~Pn~pITRAEFArwLVR 361 (837)
+....+-+.|+|.++|+..
T Consensus 268 ~~~S~r~~~~~eVve~I~~ 286 (652)
T COG2433 268 DLESRRGIDRSEVVEFISE 286 (652)
T ss_pred eeeccccCCHHHHHHHHHH
Confidence 3555667777777777755
No 175
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.47 E-value=3.1e+02 Score=28.00 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=8.0
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 003228 669 ALSMARAWAEDEAKRARE 686 (837)
Q Consensus 669 AL~m~R~W~EdEA~r~~e 686 (837)
||.|--.=+|+..++.++
T Consensus 155 ~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 155 ALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 176
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=31.77 E-value=4.5e+02 Score=24.92 Aligned_cols=97 Identities=10% Similarity=0.218 Sum_probs=54.8
Q ss_pred chHHHHHhHHHHHHHHHHhhhhcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHH-HHH
Q 003228 729 SVDQTVSRAQSLVDKLKAMANDVS------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELK-------DAT-ILK 794 (837)
Q Consensus 729 ~~~~~~~ra~~l~~k~~~m~~~~~------~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~-------~~~-~~~ 794 (837)
.+...|.+-...++.|..+-..+. ...+.-|+.++..|..++..++..+..+........ +.+ ..-
T Consensus 10 ~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q 89 (151)
T cd00179 10 EIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQ 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 345556666666666666655544 234666677777777777777777766665543321 000 122
Q ss_pred hhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHH
Q 003228 795 AKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVE 829 (837)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~ 829 (837)
.....+.++....+|...= .++.+.||.-+.
T Consensus 90 ~~~L~~~f~~~m~~fq~~Q----~~~~~~~k~~i~ 120 (151)
T cd00179 90 HSGLSKKFVEVMTEFNKAQ----RKYRERYKERIQ 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 2334455556666666555 566777777443
No 177
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.58 E-value=2.3e+02 Score=34.77 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 640 ERINMLRKEAENENQEIARLQYELEVE 666 (837)
Q Consensus 640 ~~l~kL~~~~e~~~q~i~~~k~~LE~E 666 (837)
.+++.|++.+.++++++++||-++|.-
T Consensus 114 ~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 114 TKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 456777788888888888887776643
No 178
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=31.58 E-value=5e+02 Score=25.37 Aligned_cols=101 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred chHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHH
Q 003228 729 SVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAE 808 (837)
Q Consensus 729 ~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (837)
.+-..++.....++........+.....++...+ +.|...+..+..-+.+....+.++..+ +.........+...+.+
T Consensus 111 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~-~~i~~~i~~i~~~~~~~~~~~~~i~~~-i~~i~~~~~~~~~~~~~ 188 (213)
T PF00015_consen 111 QVVESMEESREQIEEGSESVEETSESLEEIAESV-EEISDSIEEISESAEEQSESIEQINES-IEEISEISEQISASSEE 188 (213)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhhhhhcccchhcchhhhhhhhhh-hHHhhhhHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred HhhhhcccchhhhhhhhhhHHhhhhhcc
Q 003228 809 FRSNLTEGAKRVAGDCREGVEKLTQRFK 836 (837)
Q Consensus 809 ~~~~~~~~~kr~~~~c~~gv~k~~~rfk 836 (837)
+...+ .-...+-+.+..+.+|||
T Consensus 189 ~~~~~-----~~l~~~a~~L~~~v~~Fk 211 (213)
T PF00015_consen 189 IAEAA-----EELSESAEELQELVDRFK 211 (213)
T ss_dssp HHHHH-----HHHHHHHCCCCHHCHHHC
T ss_pred HHHHH-----HHHHHHHHHHHHHHHhcc
No 179
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.53 E-value=8.4e+02 Score=27.91 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH
Q 003228 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 651 (837)
Q Consensus 614 L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~ 651 (837)
|..|+.++.++..+...+--.|..=+..|+.|+..+..
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 55566666666665555555555555555555555433
No 180
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=31.36 E-value=1.2e+02 Score=28.93 Aligned_cols=60 Identities=37% Similarity=0.382 Sum_probs=35.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHhHHHHHH
Q 003228 564 ELSMEREKIDVVEKMAEEARQELERLRAEREVD----KIALMKERAAIESEMEILSKLRREVEE 623 (837)
Q Consensus 564 el~~Er~~~~~vek~~eea~~eLe~~r~ere~e----~~~llKerAa~e~e~q~L~~Lr~EVde 623 (837)
+|..|+.+...+|+-...+-.||+.|-+.==.+ -+.--++|++++.....|-.--.|.+.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~ 65 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA 65 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777778888888888888777643222 223335666666665544443344443
No 181
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.36 E-value=6.9e+02 Score=26.91 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003228 654 QEIARLQYELEVERKALS 671 (837)
Q Consensus 654 q~i~~~k~~LE~EkkAL~ 671 (837)
.++..++..+.....+|.
T Consensus 196 ~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 196 AELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 444444444444444443
No 182
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.03 E-value=1.6e+02 Score=33.70 Aligned_cols=11 Identities=0% Similarity=0.238 Sum_probs=6.8
Q ss_pred HHHHHHHhHHH
Q 003228 669 ALSMARAWAED 679 (837)
Q Consensus 669 AL~m~R~W~Ed 679 (837)
...+|-+|+++
T Consensus 268 niDIL~~k~~e 278 (365)
T KOG2391|consen 268 NIDILKSKVRE 278 (365)
T ss_pred hhHHHHHHHHH
Confidence 34566777765
No 183
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=30.71 E-value=49 Score=29.85 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCcEE-----------------EEcCCccccccccchhhhcccccc
Q 003228 677 AEDEAKRAREQAKALEGARDRWERQGIKV-----------------VVDKDLREESDAAVMWVNAGKQFS 729 (837)
Q Consensus 677 ~EdEA~r~~e~A~vLEea~~rW~~~gikv-----------------~vd~~~~~~~~~~~~w~~~~~~~~ 729 (837)
.+-+.++.+++..+|.+++..=..+||.+ .|---++...++|-||.--|+.-.
T Consensus 12 ~~~~~~~~~e~~~~~~~i~~~~~~~Gis~~el~~~~~~~~~~~~~~~~~~KYr~p~~~g~tWsGrGr~P~ 81 (93)
T PF00816_consen 12 KEIEERRKQEREEAIAEIRELMAEYGISPEELAFGSAKKKKKRKRAKVPPKYRNPENPGETWSGRGRRPK 81 (93)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHTT--HHHCHHCCS-----EEEECSSESEEECSSSSEEECSSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHhhhhhhccccccccCCCCCeEeecCCCCCEeeccCCCCH
Confidence 44566777788889999998888899764 122224444556789997776643
No 184
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=30.59 E-value=1.1e+03 Score=28.99 Aligned_cols=70 Identities=29% Similarity=0.280 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003228 606 AIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAE---NENQEIARLQYELEVERKALSMARAW 676 (837)
Q Consensus 606 a~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e---~~~q~i~~~k~~LE~EkkAL~m~R~W 676 (837)
-+|-|+++|-.|..|.+-+ ++..-.+-.|..=+.+.++-+.+.+ .++|+..|-|-.++.|++-.-.+|.-
T Consensus 184 ~~e~Q~qv~qsl~~el~~i-~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~ 256 (591)
T KOG2412|consen 184 LLEEQNQVLQSLDTELQAI-QREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAE 256 (591)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3666677777666544322 1111112222222222233333333 34667777777777777766667753
No 185
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=30.46 E-value=1.9e+02 Score=27.67 Aligned_cols=82 Identities=29% Similarity=0.389 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHH
Q 003228 570 EKIDVVEKMAEEARQELERLRAEREV-------DKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 642 (837)
Q Consensus 570 ~~~~~vek~~eea~~eLe~~r~ere~-------e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l 642 (837)
+....=.+.+..+..||+++|.--.- =..-|=+|||+++-|- -|++|++-+|.. |+.+-|
T Consensus 6 ~~v~~er~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~mEA-----------~Qy~Rm~EEk~~--yD~e~i 72 (94)
T PF04576_consen 6 RAVEAERKALAALYAELEEERSAAASAASEAMAMILRLQEEKAAVEMEA-----------RQYQRMAEEKAE--YDQEAI 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHh--hHHHHH
Confidence 33444455666666777776652211 1112334455443221 478888888765 566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003228 643 NMLRKEAENENQEIARLQYELE 664 (837)
Q Consensus 643 ~kL~~~~e~~~q~i~~~k~~LE 664 (837)
+.|..-+-.+..++..|..+|+
T Consensus 73 e~L~~~l~~rE~e~~~Le~ele 94 (94)
T PF04576_consen 73 ESLKDILYKREKEIQSLEAELE 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 8888777777777776666553
No 186
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=30.45 E-value=4.4e+02 Score=33.17 Aligned_cols=78 Identities=32% Similarity=0.374 Sum_probs=44.3
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 003228 599 ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR---- 674 (837)
Q Consensus 599 ~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R---- 674 (837)
.|--|||+++.+-.-+-.=|.-||.|.+- -+..-+.-..+|+...+.+-.+--+.|-||.|--|+-
T Consensus 393 al~~era~l~a~w~rv~egrr~v~~mv~~----------grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ 462 (828)
T PF04094_consen 393 ALAAERAALDAEWARVDEGRRAVDAMVEV----------GRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLD 462 (828)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777666555555566666432 2222233345555555555555555566655544432
Q ss_pred -----------HhHHHHHHHHHH
Q 003228 675 -----------AWAEDEAKRARE 686 (837)
Q Consensus 675 -----------~W~EdEA~r~~e 686 (837)
+|+||=+||...
T Consensus 463 ea~~~irlqy~~~~~~l~k~~~~ 485 (828)
T PF04094_consen 463 EALGDIRLQYEAHAEDLAKRVDD 485 (828)
T ss_pred hhccccccccchHHHHHHHHHHh
Confidence 788888887655
No 187
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=30.41 E-value=3.6e+02 Score=29.94 Aligned_cols=55 Identities=27% Similarity=0.347 Sum_probs=25.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 608 ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYE 662 (837)
Q Consensus 608 e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~ 662 (837)
..++..|..-+.|++++++.+..++-++..++...++....++.++.++...+-+
T Consensus 25 ~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~ 79 (344)
T PF12777_consen 25 EEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEE 79 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444444444444444444444444444444433
No 188
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=30.36 E-value=3.4e+02 Score=33.62 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=65.1
Q ss_pred Cccccccccchhhhcc-----cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 003228 710 DLREESDAAVMWVNAG-----KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIH---KILLFISNLKKWASKAS 781 (837)
Q Consensus 710 ~~~~~~~~~~~w~~~~-----~~~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~---~i~~~i~~l~~~~~~~~ 781 (837)
.|-+++-....|.|+. +.-+.+++=.++-+|+-||+....+++.-..+.+..+++ ++..=|..||.-+..+.
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3555555667788863 222334444578999999999999999776666666655 33334555666666666
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHH
Q 003228 782 MRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVE 829 (837)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~ 829 (837)
.+...++... .++..... .++.. -.-.+..|+=++.|++.+.
T Consensus 84 ~~~~~v~~~~-~~~e~~t~---~s~~~--L~~ld~vK~rm~~a~~~L~ 125 (766)
T PF10191_consen 84 EQMASVQEEI-KAVEQDTA---QSMAQ--LAELDSVKSRMEAARETLQ 125 (766)
T ss_pred HHHHHHHHHH-hhhhccHH---HHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 6665555542 22222111 11111 1124555666677776654
No 189
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=30.11 E-value=2.8e+02 Score=32.26 Aligned_cols=50 Identities=38% Similarity=0.378 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 003228 547 SALVAEVEKEIN--ESFEKELSMEREKIDV----VEKMAEEARQELERLRAEREVD 596 (837)
Q Consensus 547 ~~l~~~~~~di~--~~f~~el~~Er~~~~~----vek~~eea~~eLe~~r~ere~e 596 (837)
.+|+-++++|-- .--++++..||+|+.. |||++++..-|.+.||++++.+
T Consensus 209 ~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~re 264 (561)
T KOG1103|consen 209 EEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELERE 264 (561)
T ss_pred HHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777752 2457788899998764 8888888888888888865543
No 190
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.00 E-value=7.4e+02 Score=29.23 Aligned_cols=67 Identities=28% Similarity=0.432 Sum_probs=45.6
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 601 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (837)
Q Consensus 601 lKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 671 (837)
.|||+.-|.|-..- +|+-|-.-|-|...-+|+-.-.|++.|. +++|.+..++.+++-.+.+--.||.
T Consensus 321 akek~~KEAqarea-klqaec~rQ~qlaLEEKaaLrkerd~L~---keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 321 AKEKAGKEAQAREA-KLQAECARQTQLALEEKAALRKERDSLA---KELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 35555555544332 7778888888888888877777776654 4667777777777777777777764
No 191
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=29.77 E-value=7.2e+02 Score=26.58 Aligned_cols=51 Identities=35% Similarity=0.447 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 003228 558 NESFEKELSMEREK-IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME 612 (837)
Q Consensus 558 ~~~f~~el~~Er~~-~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q 612 (837)
|+-.+.+|..=+.+ ...+..+...-..||..+|. ....+.++++.++-+..
T Consensus 27 N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~----~id~~~~eka~l~~e~~ 78 (312)
T PF00038_consen 27 NKRLESEIEELREKKGEEVSRIKEMYEEELRELRR----QIDDLSKEKARLELEID 78 (312)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhcccccCcccccchhhHHHHhHH----hhhhHHHHhhHHhhhhh
Confidence 33444444433333 33333333333444444442 23344555555555443
No 192
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.62 E-value=1e+03 Score=28.24 Aligned_cols=61 Identities=26% Similarity=0.383 Sum_probs=35.0
Q ss_pred HHHhhhcceehhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHH
Q 003228 625 LESLMSNKVEISYEKERINML-----------RKEAENENQEIARLQYELEVERKALSMAR---AWAEDEAKRAR 685 (837)
Q Consensus 625 ~q~L~s~~~ei~~Ek~~l~kL-----------~~~~e~~~q~i~~~k~~LE~EkkAL~m~R---~W~EdEA~r~~ 685 (837)
+..|+-.+..|..|+..+..+ ...++.+.+-+.++...|+.+.+=|.-|+ +=++++-.+..
T Consensus 170 ~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 170 LKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444556666777777666644 33444555555666666777666666665 33444444444
No 193
>PRK15396 murein lipoprotein; Provisional
Probab=29.14 E-value=2.1e+02 Score=26.43 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003228 641 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 688 (837)
Q Consensus 641 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A 688 (837)
.+++|+++++.=+..+.+ |..+..+++..--=+.+||.|+.+|=
T Consensus 26 kvd~LssqV~~L~~kvdq----l~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQ----LSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665544444444 44445555555555889999998873
No 194
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=29.02 E-value=7e+02 Score=26.25 Aligned_cols=93 Identities=23% Similarity=0.343 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003228 605 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRA 684 (837)
Q Consensus 605 Aa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~ 684 (837)
|+|.-..++|..|..||-|-=.-+-.++..+..=+.+++--..-...-++.+..++.-|+.=+.-|..++.-++-=-...
T Consensus 60 AaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el 139 (188)
T PF05335_consen 60 AALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQEL 139 (188)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666665444444444444445555555555555555555555555555555555554444444444
Q ss_pred HHHHHHHHHHhHH
Q 003228 685 REQAKALEGARDR 697 (837)
Q Consensus 685 ~e~A~vLEea~~r 697 (837)
.|.-..|+.|++|
T Consensus 140 ~eK~qLLeaAk~R 152 (188)
T PF05335_consen 140 AEKTQLLEAAKRR 152 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555555
No 195
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.91 E-value=5.9e+02 Score=33.00 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003228 563 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKER 604 (837)
Q Consensus 563 ~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKer 604 (837)
++..+||.+.+--.+..++.++|..||...+.+.-..|.|..
T Consensus 1114 dK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~ 1155 (1189)
T KOG1265|consen 1114 DKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKH 1155 (1189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777778877777776666666655544
No 196
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=28.76 E-value=4.4e+02 Score=23.80 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcC-Cccccccccc
Q 003228 642 INMLRKEAENENQEIARLQYELE-VERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDK-DLREESDAAV 719 (837)
Q Consensus 642 l~kL~~~~e~~~q~i~~~k~~LE-~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd~-~~~~~~~~~~ 719 (837)
|+.|..-+..+++.....++.-- +....+.=+..+..+.|...++|+.-+.+ |=...|..+.... ++.+ .+.+
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e---~i~~lgg~p~~~~~~~~~--~~~~ 75 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAE---RILMLGGKPSGSPVEIPE--IPKP 75 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTS-SSTSHHHHHH--HHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHH---HHhcCCCCCCCcHHHhhh--hhcc
Confidence 35566666666666655544321 22334444567788888888888877765 3333443222211 1111 1111
Q ss_pred hhhhcccccchHHHHHhH----HHHHHHHHHhhhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003228 720 MWVNAGKQFSVDQTVSRA----QSLVDKLKAMANDVS----GKSKEIINTIIHKILLFISNLKKWASKAS 781 (837)
Q Consensus 720 ~w~~~~~~~~~~~~~~ra----~~l~~k~~~m~~~~~----~~~~~~~~~~~~~i~~~i~~l~~~~~~~~ 781 (837)
.+ -.++.+.+..+ +.+++.++.+..... -...+.+..++.....-+..|+.+..++.
T Consensus 76 ~~-----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l~ 140 (142)
T PF00210_consen 76 PE-----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNLK 140 (142)
T ss_dssp SS-----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 13555555544 555666665555543 35666777777777777777777766654
No 197
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.75 E-value=8.7e+02 Score=27.23 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhHHHHH
Q 003228 546 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREV---DKIALMKERAAIESEMEILSKLRREVE 622 (837)
Q Consensus 546 ~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~---e~~~llKerAa~e~e~q~L~~Lr~EVd 622 (837)
++.|.++ ++|= -|+-++. .--...+++.++....+.+.|...-+. -+..+.+..+.+..|...|..+..|++
T Consensus 125 ~aRl~ak--~~WY-eWR~kll--egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 125 FARLEAK--KMWY-EWRMKLL--EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHH--HHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4445554 5663 5665552 223344555555555555555432222 223556666777777777777766654
Q ss_pred HH-HHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 623 EQ-LESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (837)
Q Consensus 623 e~-~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 671 (837)
.- -.-|..-|-++......++..+.+++..++.+.++...++.-.+=..
T Consensus 200 ~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 200 DCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 01122223445555555555555555555555555555554433333
No 198
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=28.47 E-value=9e+02 Score=30.04 Aligned_cols=28 Identities=25% Similarity=0.156 Sum_probs=18.1
Q ss_pred cHHHHHHHHHhcchhhhHHHHHHHHHHH
Q 003228 509 TNAQAAVALAIGEASDAVNEELQRIEAE 536 (837)
Q Consensus 509 TRAEAAAaL~sG~~~e~v~eEL~RlEAE 536 (837)
-|..+..--.+-+..+.+.||-.|-|||
T Consensus 597 dRks~srekr~~~sfdk~kE~Rr~Re~e 624 (940)
T KOG4661|consen 597 DRKSRSREKRRERSFDKRKEERRRREAE 624 (940)
T ss_pred hhHHHHHHhhhhhhHHhhhhHHHhHHHH
Confidence 5555555555666677777777666666
No 199
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.05 E-value=2.8e+02 Score=24.42 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003228 641 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 688 (837)
Q Consensus 641 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A 688 (837)
+|.+|.++++.=+..|.+|..+. .+|+-.-.=+.+||.|+.+|-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv----~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDV----NALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 56677777666555555555444 444444445778999998874
No 200
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=27.78 E-value=1.3e+03 Score=29.69 Aligned_cols=60 Identities=25% Similarity=0.168 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHH
Q 003228 574 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYE 638 (837)
Q Consensus 574 ~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~E 638 (837)
.+.|-|++....|.--+..+.++..-+.|-+-.+|.|+ -|.|-||+-++=.-++-..-.|
T Consensus 900 ~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER-----~rrEaeek~rre~ee~k~~k~e 959 (1259)
T KOG0163|consen 900 VAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAER-----KRREAEEKRRREEEEKKRAKAE 959 (1259)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH
Confidence 34455555555444433334444444444444444443 3555555555444443333333
No 201
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=27.75 E-value=9.3e+02 Score=28.34 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 624 QLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 673 (837)
Q Consensus 624 ~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~ 673 (837)
|++.|..-++--.. +..++||++++....+++.+++..|..+.+...|.
T Consensus 390 qa~~IL~m~L~~LT-~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i 438 (445)
T cd00187 390 QADAILDMRLRRLT-KLEREKLLKELKELEAEIEDLEKILASEERPKDLW 438 (445)
T ss_pred HHHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 56666555554433 56678999999999999999999998888876664
No 202
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=27.55 E-value=5.1e+02 Score=26.47 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=33.2
Q ss_pred cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 003228 726 KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLF 769 (837)
Q Consensus 726 ~~~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~ 769 (837)
=+..|+++.+..+.|+.|-+.++.||+||.- -|+.+..-|..+
T Consensus 43 l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~-tld~vf~aV~dl 85 (139)
T COG4768 43 LTSQVDGITHETEELLHKTNTLAEDVQGKVA-TLDPVFDAVKDL 85 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHhHHHHHHHHH
Confidence 3567899999999999999999999999974 445555444443
No 203
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=27.47 E-value=7.5e+02 Score=29.17 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 003228 574 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKL 617 (837)
Q Consensus 574 ~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~L 617 (837)
+-||.-.||.....+++++....-.-.|-|+||+..|+..|.+-
T Consensus 321 akek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~ke 364 (442)
T PF06637_consen 321 AKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKE 364 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666888888777777888888888888877653
No 204
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.29 E-value=1.3e+03 Score=28.72 Aligned_cols=78 Identities=27% Similarity=0.307 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhHHHHHHH---HHHhhhcceehhHHHHHHH
Q 003228 570 EKIDVVEKMAEEARQELERLRAEREV---DKIALMKERAAIESEMEILSKLRREVEEQ---LESLMSNKVEISYEKERIN 643 (837)
Q Consensus 570 ~~~~~vek~~eea~~eLe~~r~ere~---e~~~llKerAa~e~e~q~L~~Lr~EVde~---~q~L~s~~~ei~~Ek~~l~ 643 (837)
.+|.++|.-+-..+++|.+.+.+++. ....+..-.+++|.|+- +||.|+.|- =+||.++-.+.--|-=-||
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~---rlr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR---RLRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 57888888888889999988887764 33456666788888874 566666553 4677777666655555566
Q ss_pred HHHHHHH
Q 003228 644 MLRKEAE 650 (837)
Q Consensus 644 kL~~~~e 650 (837)
|+-+-+-
T Consensus 184 KqVs~LR 190 (772)
T KOG0999|consen 184 KQVSNLR 190 (772)
T ss_pred HHHHHHh
Confidence 6655443
No 205
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=27.21 E-value=6.3e+02 Score=30.65 Aligned_cols=112 Identities=30% Similarity=0.402 Sum_probs=62.6
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHH
Q 003228 534 EAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALM--KERAAIESEM 611 (837)
Q Consensus 534 EAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~ll--KerAa~e~e~ 611 (837)
+||++|.+--+...+|.+..|+=+ .+.+++-+.||.++.++ .+....++| |.|+|++-=.
T Consensus 275 ~ae~qaKnPKAekqalnqhFQ~~v-~sLEee~a~erqqlvet-----------------H~~RV~AmlNdrrR~Ale~yl 336 (615)
T KOG3540|consen 275 EAETQAKNPKAEKQALNQHFQKTV-SSLEEEAARERQQLVET-----------------HEARVEAMLNDRRRDALENYL 336 (615)
T ss_pred HHHhcccCchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHhhHHHHHHHHHH
Confidence 466677664444566666655544 46666666666665542 111112222 2234444333
Q ss_pred H-----------HHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 003228 612 E-----------ILSKLRREVEEQLESLMSNKVEISYEKERINMLR-----------KEAENENQEIARLQYELEVERKA 669 (837)
Q Consensus 612 q-----------~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~-----------~~~e~~~q~i~~~k~~LE~EkkA 669 (837)
+ +|..||.=| -.-+|+|+.-|+ +-.+-+-|-+..|+++-|.=-..
T Consensus 337 aALqa~pprp~~Vl~aLkrYv-------------RAEqKdr~HTlrhyqHv~~vDpkkAaqmk~qV~thLrvIeeR~Nqs 403 (615)
T KOG3540|consen 337 AALQADPPRPHRVLQALKRYV-------------RAEQKDRMHTLRHYQHVLAVDPKKAAQMKSQVMTHLRVIEERINQS 403 (615)
T ss_pred HHHhcCCCChHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3 333443322 123455555443 44566778899999998888889
Q ss_pred HHHHHHh
Q 003228 670 LSMARAW 676 (837)
Q Consensus 670 L~m~R~W 676 (837)
|+||+.-
T Consensus 404 LslL~~~ 410 (615)
T KOG3540|consen 404 LSLLYDV 410 (615)
T ss_pred hHHHhcC
Confidence 9999843
No 206
>PRK10404 hypothetical protein; Provisional
Probab=27.03 E-value=5.6e+02 Score=24.43 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003228 738 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAE 786 (837)
Q Consensus 738 ~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~ 786 (837)
+.|.+-|+.|..++....+..=+.--.++..|-..+......++.+..+
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~ 56 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQ 56 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444433333333333333333333333333333333
No 207
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.95 E-value=8e+02 Score=26.24 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003228 531 QRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKI 572 (837)
Q Consensus 531 ~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~ 572 (837)
-+.|+|++|..=..--..|...+++.| +-|-++...++..+
T Consensus 65 ~~~e~E~~a~~H~~la~~L~~ev~~~l-~~f~~~~~k~~k~~ 105 (233)
T cd07649 65 VKKSLADEAEVHLKFSSKLQSEVEKPL-LNFRENFKKDMKKL 105 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345777776542222233444445555 46776655554443
No 208
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=26.62 E-value=2.1e+02 Score=30.63 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=37.4
Q ss_pred CCCCCcHHHHHHHHH-hcchhhhHHHHHHHHHHHHH-hHHHHhh---h-HHH--------HHHHHHHHHHHHH
Q 003228 504 PDKPVTNAQAAVALA-IGEASDAVNEELQRIEAESA-AENAVSE---H-SAL--------VAEVEKEINESFE 562 (837)
Q Consensus 504 PnkPVTRAEAAAaL~-sG~~~e~v~eEL~RlEAE~~-a~~av~~---~-~~l--------~~~~~~di~~~f~ 562 (837)
|+.+---+-++.... +...+|-++.||+++|.|-. -|+..++ | ++| +-++.+||+++|-
T Consensus 26 ~~~~~~a~s~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~ 98 (208)
T KOG4010|consen 26 PVGTDVAASASEFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWK 98 (208)
T ss_pred CCccchhhhhhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHh
Confidence 344333333333333 77888999999999998854 3444444 3 333 3345789999997
No 209
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.32 E-value=5.5e+02 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=19.2
Q ss_pred hhhcccccchHHHHHhHHHHHHHHHH
Q 003228 721 WVNAGKQFSVDQTVSRAQSLVDKLKA 746 (837)
Q Consensus 721 w~~~~~~~~~~~~~~ra~~l~~k~~~ 746 (837)
-..-|....||.++..|...+++-..
T Consensus 71 ~v~iG~g~~vE~~~~eA~~~l~~~~~ 96 (126)
T TIGR00293 71 LVSIGSGYYVEKDAEEAIEFLKKRIE 96 (126)
T ss_pred EEEcCCCEEEEecHHHHHHHHHHHHH
Confidence 44567888999999999777765433
No 210
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.08 E-value=8e+02 Score=25.94 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHH
Q 003228 537 SAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEI 613 (837)
Q Consensus 537 ~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~ 613 (837)
..+..........-.+.++.|+ -|.++...=..++..+++-.+......+++.. .++++++.|=+....++.-++.
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id-~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRID-QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHhhhcceehhHH--HHHHHHHHHHHHH
Q 003228 614 LSKLRREVEEQLESLMSNKVEISYE--KERINMLRKEAEN 651 (837)
Q Consensus 614 L~~Lr~EVde~~q~L~s~~~ei~~E--k~~l~kL~~~~e~ 651 (837)
|.-+=..+-+.|+.+...-+=+..+ ..||++|...+..
T Consensus 103 l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 103 LVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
No 211
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=25.92 E-value=6.9e+02 Score=25.16 Aligned_cols=67 Identities=24% Similarity=0.313 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHH
Q 003228 575 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRK 647 (837)
Q Consensus 575 vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~ 647 (837)
.+++.+.|..+.+..+. |..-.+.+-..+.-+..+.+++..+-.++-+.|..|..+ .| +.-|.+|..
T Consensus 45 ~~~i~~~a~~~ae~ek~-r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~l~~~~~~--~Y---~~~l~~li~ 111 (198)
T PRK03963 45 AEWILRKAKTQAELEKQ-RIIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPED--EY---FETLKALTK 111 (198)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hH---HHHHHHHHH
Confidence 44555555555554443 333333444455566677888888888998888887765 22 245555544
No 212
>PF13945 NST1: Salt tolerance down-regulator
Probab=25.89 E-value=2.4e+02 Score=29.80 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 003228 555 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAERE-VDK-IALMKERAAIESEMEILSKLRREVEEQLESL 628 (837)
Q Consensus 555 ~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere-~e~-~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 628 (837)
.-|+.||+.==..||..++-|||-.. |..+|..+. -+. .+-=+-|.|||.|++.|.....|--+++...
T Consensus 105 e~LkeFW~SL~eeERr~LVkIEKe~V-----LkkmKeqq~h~C~C~vCgr~~~~ie~ele~ly~~~y~~l~~~~~~ 175 (190)
T PF13945_consen 105 EKLKEFWESLSEEERRSLVKIEKEAV-----LKKMKEQQKHSCSCSVCGRKRTAIEEELERLYDAYYEELEQYANH 175 (190)
T ss_pred HHHHHHHHccCHHHHHHHHHhhHHHH-----HHHHHHHhccCcccHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777887666677999999998542 334443210 111 2444567899999999998887776666543
No 213
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.81 E-value=7.1e+02 Score=29.85 Aligned_cols=62 Identities=24% Similarity=0.310 Sum_probs=42.9
Q ss_pred ccccchHHHHHhHHHHHHHHHHhhhhcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003228 725 GKQFSVDQTVSRAQSLVDKLKAMANDVS-------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKD 789 (837)
Q Consensus 725 ~~~~~~~~~~~ra~~l~~k~~~m~~~~~-------~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~ 789 (837)
.|...-++-+.-|....+|||.--..+- |+| |+.|=+||.+.-+.|-+--..++.+.++.+.
T Consensus 354 kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss---lDdVD~kIleak~al~evtt~lrErl~RWqQ 422 (575)
T KOG4403|consen 354 KKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS---LDDVDHKILEAKSALSEVTTLLRERLHRWQQ 422 (575)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888887655554 444 7777788888877776666666666655443
No 214
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=25.77 E-value=1e+03 Score=27.08 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=50.4
Q ss_pred ccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003228 713 EESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATI 792 (837)
Q Consensus 713 ~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~ 792 (837)
+..+.-.+|... ....+.+|+..+.+-..|-..|.+-...+.+.+.......=..|++++.++..--.+|..- .
T Consensus 194 ~~~~tp~~W~~~-----s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~q-l 267 (384)
T PF03148_consen 194 KNSSTPESWEEF-----SNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQ-L 267 (384)
T ss_pred ccCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 444555677653 4778999998888877776666655555555554444444456666666666555555444 3
Q ss_pred HHhhhhHHHHH
Q 003228 793 LKAKGSVQELQ 803 (837)
Q Consensus 793 ~~~~~~~~~~~ 803 (837)
.++..-+..++
T Consensus 268 ~~~~~ei~~~e 278 (384)
T PF03148_consen 268 KKTLQEIAEME 278 (384)
T ss_pred HhHHHHHHHHH
Confidence 33333333333
No 215
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.67 E-value=6.1e+02 Score=31.01 Aligned_cols=60 Identities=25% Similarity=0.163 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHhHHHHHHHHHHhh
Q 003228 554 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESE-MEILSKLRREVEEQLESLM 629 (837)
Q Consensus 554 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e-~q~L~~Lr~EVde~~q~L~ 629 (837)
=.|+...|.-.++.+|++-. +..+++|+.|+++.+-- ...+ ..+|.++..||++|-+.|-
T Consensus 439 i~~~~~~~~sd~~~~rer~l---------~a~t~kL~~E~e~~q~~-------~~~~l~~~~~~~~~em~~~r~tlE 499 (588)
T KOG3612|consen 439 IIDLQESTLSDYSGSRERSL---------VAATEKLRQEFEELQQT-------SRRELPVPLRNFELEMAEMRKTLE 499 (588)
T ss_pred HHHHHHHHHHHhhcCCccch---------HHHHHHHHHHHHHHHHH-------HhhhhhhhhhcchHHHHHHHHHHH
Confidence 47889999999988887643 23344444444333221 1111 2337778888888776653
No 216
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=25.11 E-value=8.6e+02 Score=27.73 Aligned_cols=114 Identities=25% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHH----HHh
Q 003228 550 VAEVEKEINESFEKELSMEREKIDVVEKMA-----EEARQELERLRA---EREVDKIALMKERAAIESEMEIL----SKL 617 (837)
Q Consensus 550 ~~~~~~di~~~f~~el~~Er~~~~~vek~~-----eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~L----~~L 617 (837)
+.+++|||+ ...+++..-|-....+.--- +.....||+++. .=+.+.-.++-|+..+.+|+... .+|
T Consensus 95 l~E~qGD~K-lLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL 173 (319)
T PF09789_consen 95 LNEAQGDIK-LLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL 173 (319)
T ss_pred HHHHhchHH-HHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-------hhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 618 RREVEEQLES-------LMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 664 (837)
Q Consensus 618 r~EVde~~q~-------L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE 664 (837)
-+|+--+|-. +=.-=+|--|=++||..++.+.+--.+.|..-|+-||
T Consensus 174 N~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 174 NHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 217
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.10 E-value=1.7e+03 Score=29.44 Aligned_cols=128 Identities=19% Similarity=0.216 Sum_probs=57.6
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 003228 531 QRIEAESAAENAVSEHSALVAEV---EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI 607 (837)
Q Consensus 531 ~RlEAE~~a~~av~~~~~l~~~~---~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~ 607 (837)
.|||+-.--..+...+++|.+.+ |..|+ .++.++..=+....-+|........+.+.++.+-..-+.....=.-++
T Consensus 665 srLe~~k~~~~~~~~~~~l~~~L~~~r~~i~-~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~ 743 (1200)
T KOG0964|consen 665 SRLELLKNVNESRSELKELQESLDEVRNEIE-DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESL 743 (1200)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 45555555555555554444433 45553 344443333333333444444444444444444333333222222333
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhccee---hh------HHHHHHHHHHHHHHHHHHHHHHH
Q 003228 608 ESEMEILSKLRREVEEQLESLMSNKVE---IS------YEKERINMLRKEAENENQEIARL 659 (837)
Q Consensus 608 e~e~q~L~~Lr~EVde~~q~L~s~~~e---i~------~Ek~~l~kL~~~~e~~~q~i~~~ 659 (837)
+.-...|..++-..+.+.+..-+.+.+ .+ .|++++.+|..++..=++.+-.+
T Consensus 744 ~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~ 804 (1200)
T KOG0964|consen 744 EPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRAL 804 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333334444443333333333222222 22 46778888888777665554433
No 218
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=24.72 E-value=6.5e+02 Score=26.63 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=34.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 003228 563 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI 607 (837)
Q Consensus 563 ~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~ 607 (837)
++...||.+.+---++.++++++.-+|...+++.-..|++..+++
T Consensus 91 dK~e~er~KrEin~s~I~e~V~~ikrL~~~qekrqekL~~kh~e~ 135 (185)
T PF08703_consen 91 DKDEQERLKREINRSHIQEVVQEIKRLEEKQEKRQEKLEEKHEEV 135 (185)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888899999999999888888777777655543
No 219
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=24.69 E-value=1.4e+03 Score=28.45 Aligned_cols=21 Identities=19% Similarity=0.003 Sum_probs=15.9
Q ss_pred cccchHHHHHhHHHHHHHHHH
Q 003228 726 KQFSVDQTVSRAQSLVDKLKA 746 (837)
Q Consensus 726 ~~~~~~~~~~ra~~l~~k~~~ 746 (837)
..+++.++++||...+++.+.
T Consensus 586 ~~~d~~~iLsrA~~~~~~gdl 606 (657)
T KOG1854|consen 586 NITDTYKILSRARYHLLKGDL 606 (657)
T ss_pred ccccHHHHHHHHHHHHhcccH
Confidence 346778999999888877543
No 220
>PF04624 Dec-1: Dec-1 repeat; InterPro: IPR006718 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This repeat is usually found in 12 copies in the central region of the protein. Its function is unknown. Length polymorphisms of Dec-1 have been observed in wild-type strains, and are caused by changes in the numbers of the first five repeats [].; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=24.58 E-value=79 Score=24.19 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHHH
Q 003228 674 RAWAEDEAKRAREQ 687 (837)
Q Consensus 674 R~W~EdEA~r~~e~ 687 (837)
|-|.||.||--+++
T Consensus 9 RQwsEeqAk~qq~q 22 (27)
T PF04624_consen 9 RQWSEEQAKIQQAQ 22 (27)
T ss_pred HHhhHHHHHHHHHH
Confidence 99999999977664
No 221
>PRK10807 paraquat-inducible protein B; Provisional
Probab=24.30 E-value=5.3e+02 Score=30.90 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=42.4
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH-HHHHHhH
Q 003228 728 FSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSV-QELQQST 806 (837)
Q Consensus 728 ~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 806 (837)
..+++...++..+++|+..|. |+.++..+...+..+++-+.++.+.+.++...+.+.+...+ .++++..
T Consensus 413 s~l~~l~~~~~~il~kin~lp----------le~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL 482 (547)
T PRK10807 413 GGLAQIQQKLMEALDKINNLP----------LNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTL 482 (547)
T ss_pred CCHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Confidence 345677777788888877775 44444455555555555555555555554444333333222 4555555
Q ss_pred HHHhhhhcc
Q 003228 807 AEFRSNLTE 815 (837)
Q Consensus 807 ~~~~~~~~~ 815 (837)
.++...+..
T Consensus 483 ~~l~~~l~~ 491 (547)
T PRK10807 483 RELNRSMQG 491 (547)
T ss_pred HHHHHHHhh
Confidence 555444433
No 222
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=24.02 E-value=8.2e+02 Score=31.41 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=6.6
Q ss_pred cCCCCCccHHHH
Q 003228 344 VKPGDLCIRREY 355 (837)
Q Consensus 344 F~Pn~pITRAEF 355 (837)
..||..++-.+|
T Consensus 668 iKPN~kM~~~~F 679 (1259)
T KOG0163|consen 668 IKPNSKMIDRHF 679 (1259)
T ss_pred ecCccccccccc
Confidence 345555555555
No 223
>COG4877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.91 E-value=76 Score=28.19 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHhH
Q 003228 664 EVERKALSMARAWAEDEAKRAREQAKAL-EGARD 696 (837)
Q Consensus 664 E~EkkAL~m~R~W~EdEA~r~~e~A~vL-Eea~~ 696 (837)
--|-+-+--++.|++||+|-..+|-+.| -|+.|
T Consensus 12 Rl~paiy~Aia~wA~de~RSiNaQIE~lL~E~lr 45 (63)
T COG4877 12 RLEPAIYAAIAQWAEDEFRSINAQIEILLKEALR 45 (63)
T ss_pred ecCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344555667999999999999998865 44433
No 224
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.81 E-value=1.1e+03 Score=28.77 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 003228 560 SFEKELSMEREKIDVVEKMA 579 (837)
Q Consensus 560 ~f~~el~~Er~~~~~vek~~ 579 (837)
|.+++|..=+.+-..+|+.+
T Consensus 271 fL~~qL~~l~~~L~~aE~~l 290 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKL 290 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 225
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.81 E-value=3.8e+02 Score=23.88 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 003228 733 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLK 774 (837)
Q Consensus 733 ~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~ 774 (837)
++++|..|+.+. +..|-.|...+.+...++-|..|+-.+|
T Consensus 2 ~l~~Ai~lv~~A--v~~D~~g~y~eA~~lY~~ale~~~~~~k 41 (75)
T cd02684 2 SLEKAIALVVQA--VKKDQRGDAAAALSLYCSALQYFVPALH 41 (75)
T ss_pred cHHHHHHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 467788888766 7788889999999988888888876553
No 226
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=23.67 E-value=6e+02 Score=27.41 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhh
Q 003228 647 KEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWER 700 (837)
Q Consensus 647 ~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~ 700 (837)
+.++.++|.+.+-+..|-+||++..+ ..+++..-.|-+|..|++
T Consensus 55 ~~l~~eqQ~l~~er~~l~~er~~~~~----------~~~e~~~~~e~~r~~fek 98 (228)
T PRK06800 55 NQLRQEQQKLERERQQLLADREQFQE----------HVQQQMKEIEAARQQFQK 98 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443 345566667777777775
No 227
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.57 E-value=5.9e+02 Score=29.25 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 003228 592 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 628 (837)
Q Consensus 592 ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 628 (837)
++.+....+++.+..+..+.+.|.....++.++++++
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555555555666666665
No 228
>PRK10132 hypothetical protein; Provisional
Probab=23.34 E-value=4.2e+02 Score=25.61 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003228 738 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASM 782 (837)
Q Consensus 738 ~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~ 782 (837)
..|++-++.|.......+.+=+..+-.++...+...|...+.+..
T Consensus 22 ~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~ 66 (108)
T PRK10132 22 NQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTR 66 (108)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 455555555544444555555566666666666666666664443
No 229
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.23 E-value=4.9e+02 Score=26.94 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH--------------------HHHHHHHHHHH---HHHHHHHHHhhhhhHHHHH
Q 003228 554 EKEINESFEKELSMEREKIDVVEKMAE--------------------EARQELERLRA---EREVDKIALMKERAAIESE 610 (837)
Q Consensus 554 ~~di~~~f~~el~~Er~~~~~vek~~e--------------------ea~~eLe~~r~---ere~e~~~llKerAa~e~e 610 (837)
+.|| -|=+.+..-|.-|..++.+-+ +.+.-|+.-++ +|-+++...|.-+|.---=
T Consensus 40 ~~dl--~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs 117 (175)
T PRK13182 40 EEDL--QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVS 117 (175)
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhHHHHHH
Q 003228 611 MEILSKLRREVEEQLESLMSNKVEISYEKERI 642 (837)
Q Consensus 611 ~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l 642 (837)
-|||.| |.|+|||+++|-+--.-|..+.+..
T Consensus 118 Yqll~h-r~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 118 YQLLQH-RREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhc
No 230
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=23.16 E-value=96 Score=28.17 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHhHH
Q 003228 665 VERKALSMARAWAEDEA---KRAREQAKALEGARDR 697 (837)
Q Consensus 665 ~EkkAL~m~R~W~EdEA---~r~~e~A~vLEea~~r 697 (837)
....++.||+.|.+.+. ..+..-.++|..++++
T Consensus 41 l~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~ 76 (86)
T cd08779 41 LDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQ 76 (86)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHH
Confidence 45678999999999882 3355677777777664
No 231
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=23.12 E-value=8.7e+02 Score=25.32 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=70.9
Q ss_pred HHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 003228 533 IEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME 612 (837)
Q Consensus 533 lEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q 612 (837)
.|.|.+|..-..--..|..++...|. -|-.++..+|.... .+.+++...+..-...+.|-|..-+.--+
T Consensus 67 ~e~e~~a~~H~~~a~~L~~~v~~~l~-~~~~~~~~~rK~~~----------~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~ 135 (236)
T cd07651 67 LETESMAKSHLKFAKQIRQDLEEKLA-AFASSYTQKRKKIQ----------SHMEKLLKKKQDQEKYLEKAREKYEADCS 135 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544322222234444455664 46777776665542 23333333444444555555555554444
Q ss_pred HHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003228 613 ILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALE 692 (837)
Q Consensus 613 ~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLE 692 (837)
.+-.++.+. + .++.+ .++|+...++.-.+.+...+...+.=.++|.-.|.=-+.+-..+=.+-.-||
T Consensus 136 ~~e~~~~~~----~-~~~~k--------e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lE 202 (236)
T cd07651 136 KINSYTLQS----Q-LTWGK--------ELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLE 202 (236)
T ss_pred hHHHHHHHH----c-ccCcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444321 1 12222 3677777777777777777777766666666664322333344444444555
Q ss_pred HHhH
Q 003228 693 GARD 696 (837)
Q Consensus 693 ea~~ 696 (837)
+-|-
T Consensus 203 e~Ri 206 (236)
T cd07651 203 EERI 206 (236)
T ss_pred HHHH
Confidence 5443
No 232
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.86 E-value=1.9e+03 Score=29.24 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.7
Q ss_pred CCCcCcHHHHHHH
Q 003228 431 PESPLSRQDLVSW 443 (837)
Q Consensus 431 PDsPITRQELAvw 443 (837)
...|+||.++..+
T Consensus 139 ~~~plt~~~l~~~ 151 (1353)
T TIGR02680 139 AGIPLTRDRLKEA 151 (1353)
T ss_pred CCccCCHHHHHHH
Confidence 5789999998864
No 233
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=22.73 E-value=1.2e+03 Score=26.75 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 003228 619 REVEEQLESLMSNKVEISYEKERINMLRKEAEN------------ENQEIARLQYELEVERKALSMAR 674 (837)
Q Consensus 619 ~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~------------~~q~i~~~k~~LE~EkkAL~m~R 674 (837)
+.|+.+||+ +.-++..+..+|+..+.-|.. -.|++++.+..| |+||.-||
T Consensus 60 e~v~~rYqR---~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~Fl---reAL~rLr 121 (324)
T PF12126_consen 60 EAVEARYQR---DYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFL---REALERLR 121 (324)
T ss_pred HHHHHHHHH---HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHhh
Confidence 445555554 333444444454444443332 135556666555 56776665
No 234
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.71 E-value=8e+02 Score=24.76 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccc---c
Q 003228 640 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREES---D 716 (837)
Q Consensus 640 ~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~---~ 716 (837)
+.|+.+.-.++.=++.+..++..|.. |.++++=. +++. +.|+. -+...-|-|-+-.++-=.+ .
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~----L~~a~~e~-~~~i------e~L~~---l~~~~eiLVPLg~s~yV~g~i~d 68 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSS----IDMMKMEL-LKSI------ESMEG---LKTSEEILIPLGPGAFLKAKIVD 68 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHH------HHHHc---cCCCCeEEEEcCCCcEEeEEecC
Confidence 35667777777777777766665554 55555433 2222 34442 2333434444344433222 1
Q ss_pred ccchhhhcccccchHHHHHhHHHHHH-HHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003228 717 AAVMWVNAGKQFSVDQTVSRAQSLVD-KLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKAS 781 (837)
Q Consensus 717 ~~~~w~~~~~~~~~~~~~~ra~~l~~-k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~ 781 (837)
+.--...-|.-..|+.++..|...++ |.+.|-. -..+.-++|..+-+.+..+-..|..++.++-
T Consensus 69 ~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~-~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~ 133 (144)
T PRK14011 69 PDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDK-TKKEGNKKIEELNKEITKLRKELEKRAQAIE 133 (144)
T ss_pred CCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778889999999999966555 4444432 2223333333333344444444444444443
No 235
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=22.22 E-value=1.2e+02 Score=32.40 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=29.2
Q ss_pred hccCCcccccCcCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHH
Q 003228 461 YQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVA 516 (837)
Q Consensus 461 ~~~sgF~DadkIspwA~~AVaadL~aGd~GII~~vfG~tg~FqPnkPVTRAEAAAa 516 (837)
|.-..|.|.+.+|.|+...= ...++|+-|||+++++.+
T Consensus 64 yNRyaf~D~d~LP~WF~eDE------------------~kH~k~~~Pvtke~v~~~ 101 (215)
T PF07780_consen 64 YNRYAFNDDDGLPDWFVEDE------------------KKHNKPQLPVTKEEVAEY 101 (215)
T ss_pred ccccccCCCCCCchhHHHHH------------------HhhcCCCCCCCHHHHHHH
Confidence 44566999989999998642 124889999999988764
No 236
>PTZ00491 major vault protein; Provisional
Probab=21.99 E-value=9e+02 Score=31.00 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 003228 581 EARQELERLRAEREVDKIALMKERAAIES 609 (837)
Q Consensus 581 ea~~eLe~~r~ere~e~~~llKerAa~e~ 609 (837)
++-.||++++..|+.|+ .+.|+++.||-
T Consensus 749 ~~~ael~~~~~~~~~e~-~~~~~~~~le~ 776 (850)
T PTZ00491 749 EAEAELEKLRKRQELEL-EYEQAQNELEI 776 (850)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHhHHHH
Confidence 33444444444444442 33444444433
No 237
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=21.85 E-value=6.3e+02 Score=26.77 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003228 759 INTIIHKILLFISNLKKWASKAS 781 (837)
Q Consensus 759 ~~~~~~~i~~~i~~l~~~~~~~~ 781 (837)
|..++..+..+++.|.+...++.
T Consensus 190 i~~ll~~l~~l~~~l~~~~~~l~ 212 (291)
T TIGR00996 190 IGALIDNLNRVLDVLADRSDQLD 212 (291)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444444444444333333
No 238
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=21.82 E-value=1.3e+03 Score=27.97 Aligned_cols=91 Identities=26% Similarity=0.363 Sum_probs=15.1
Q ss_pred hcchhhhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH-H-------HHHHHHHHHHHHHHHH
Q 003228 519 IGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKID-V-------VEKMAEEARQELERLR 590 (837)
Q Consensus 519 sG~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~-~-------vek~~eea~~eLe~~r 590 (837)
+.+.-+.+.+||.||++-+.... ..++..+|.+|..+|+.=.-.+.++.. . -|.+++.--.|+++++
T Consensus 262 s~~~i~~l~~El~RL~~lK~~~l-----k~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 262 SLDTIEALEEELERLEELKKQNL-----KEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 45666789999999997776433 347788899999999876554444321 1 3556666667777777
Q ss_pred HH--HHHHHHHHhhhhhHHHHHHHHH
Q 003228 591 AE--REVDKIALMKERAAIESEMEIL 614 (837)
Q Consensus 591 ~e--re~e~~~llKerAa~e~e~q~L 614 (837)
.. .-+....++.++-.+-.++..|
T Consensus 337 ~~~~~~k~Il~~v~k~~~l~~~~~~L 362 (619)
T PF03999_consen 337 EEYESRKPILELVEKWESLWEEMEEL 362 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 3445556666666655555444
No 239
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.78 E-value=7.7e+02 Score=24.24 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 003228 594 EVDKIALMKERAAIESEMEILSKLRREVEEQLESL 628 (837)
Q Consensus 594 e~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 628 (837)
..|+..|+++-..+......+..|+.++.++-++.
T Consensus 50 ~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 50 REEIVKLMEENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666667777777777665443
No 240
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=21.40 E-value=9.3e+02 Score=25.02 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003228 555 KEINESFEKELSMEREKIDVVEKMAEE 581 (837)
Q Consensus 555 ~di~~~f~~el~~Er~~~~~vek~~ee 581 (837)
+||..||.+....|++-...+.|+...
T Consensus 22 ~~l~~f~keRa~iE~eYak~L~kLa~k 48 (251)
T cd07653 22 ERYGKFVKERAAIEQEYAKKLRKLVKK 48 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888777644
No 241
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=21.22 E-value=7.4e+02 Score=23.80 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEV 665 (837)
Q Consensus 614 L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~ 665 (837)
|..++.|+..+.+.|.+.+-..+.+ ..+++..+++.+.+++.+.+..+..
T Consensus 52 l~~~~~el~~~~~~l~~~~~~ls~~--~~~~~~~~l~~~~~~l~~~~~~~~~ 101 (158)
T PF03938_consen 52 LQAKQKELQKLQQKLQSQKATLSEE--ERQKRQQELQQKEQELQQFQQQAQQ 101 (158)
T ss_dssp HHHHHHHHHHHHHHHTTS----SSH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666665544433 2344455555555555555444443
No 242
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=21.08 E-value=7e+02 Score=29.17 Aligned_cols=45 Identities=27% Similarity=0.317 Sum_probs=33.3
Q ss_pred HHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 622 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 667 (837)
Q Consensus 622 de~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 667 (837)
++|++.|..-++-=.. +..++||++++....+++.+++..|..+.
T Consensus 398 ~~q~~~IL~m~L~~LT-~~e~~kL~~e~~~l~~ei~~l~~~l~~~~ 442 (445)
T smart00434 398 EEQADAILDMRLRRLT-KLEVEKLEKELKELEKEIEDLEKILASEL 442 (445)
T ss_pred HHHHHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4577777666654333 66778899999999999999988876654
No 243
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=20.99 E-value=7e+02 Score=29.11 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 003228 547 SALVAEVEKEI 557 (837)
Q Consensus 547 ~~l~~~~~~di 557 (837)
.+.+.+.+||.
T Consensus 295 ~~~i~~AeGda 305 (419)
T PRK10930 295 AQTILEAQGEV 305 (419)
T ss_pred HHHHHHhhhhH
Confidence 33344444444
No 244
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.93 E-value=1.1e+03 Score=25.69 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 003228 526 VNEELQRIEAE 536 (837)
Q Consensus 526 v~eEL~RlEAE 536 (837)
+..+++|++|+
T Consensus 86 l~~~~~~l~a~ 96 (423)
T TIGR01843 86 LESQVLRLEAE 96 (423)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 245
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.69 E-value=2e+03 Score=28.75 Aligned_cols=180 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHhHHHHhhhHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 521 EASDAVNEELQRIEAESAAENAVSEHSALVAEV-----EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREV 595 (837)
Q Consensus 521 ~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~-----~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~ 595 (837)
+..+.+.+=|..|.++-.=-....-..+|..+- -++-.....+++..+..++.++..-+-+....+.+++.+-+.
T Consensus 255 ~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~ 334 (1074)
T KOG0250|consen 255 EQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDA 334 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 003228 596 DKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA----ENENQEIARLQYELEVERKALS 671 (837)
Q Consensus 596 e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~----e~~~q~i~~~k~~LE~EkkAL~ 671 (837)
-..++.--|+.++.-+-....++.+.-+.....--.|..|.+=+..|.++.++. ..+..++.+.-..|+.|.+.|.
T Consensus 335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e 414 (1074)
T KOG0250|consen 335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE 414 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHhh
Q 003228 672 MARAWAEDEAKRAREQAKALEGARDRWER 700 (837)
Q Consensus 672 m~R~W~EdEA~r~~e~A~vLEea~~rW~~ 700 (837)
-...=+.+|-...++-++.-++....-++
T Consensus 415 ~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 415 EQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 246
>PHA02940 hypothetical protein; Provisional
Probab=20.57 E-value=5e+02 Score=29.12 Aligned_cols=88 Identities=23% Similarity=0.292 Sum_probs=70.0
Q ss_pred HHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003228 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 693 (837)
Q Consensus 614 L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEe 693 (837)
|..||+.+-|-...|---|.-|--=.=....|+++++-=+++|.+.-+.--.=|+|+.+.-+-.++---.+++++++|--
T Consensus 9 lieL~eKI~eyIkDLedlk~dyd~~dfdaddLraeLeyI~kEi~~~~~~~ksVkeaielt~siL~~yy~~a~e~~k~Ls~ 88 (315)
T PHA02940 9 LIELKEKIGEYIKDLEDLKLDYDINDFDADDLRAELEYIQKEIVESYSITKSVKEAIELTYSILTDYYNDAKEKSKLLSD 88 (315)
T ss_pred hHHHHHHHHHHHHhHHHhhccCCCCcCchhhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55688888888888877777776444456788999998888988887777777888888888888888899999999987
Q ss_pred HhHHHhhcCcE
Q 003228 694 ARDRWERQGIK 704 (837)
Q Consensus 694 a~~rW~~~gik 704 (837)
| +.++||+
T Consensus 89 A---y~kN~i~ 96 (315)
T PHA02940 89 A---YNKNAIK 96 (315)
T ss_pred H---HhhccHH
Confidence 6 4556665
No 247
>PTZ00421 coronin; Provisional
Probab=20.44 E-value=1.6e+02 Score=34.50 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 639 KERINMLRKEAENENQEIARLQYELEVERKALSM 672 (837)
Q Consensus 639 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m 672 (837)
+.||+.|..++...|++|.+++-.|+ ||+++.|
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 484 (493)
T PTZ00421 452 LGRLQALSEKLRTQHEEIKRCREALQ-KKESIVM 484 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35677888888888888888888876 5676665
No 248
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.38 E-value=1.5e+03 Score=28.33 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=43.6
Q ss_pred HHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003228 622 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 679 (837)
Q Consensus 622 de~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~Ed 679 (837)
++|.+.|..-++.-.. +..++||++++....+++.+++..|..+.+=+.+.+.+..+
T Consensus 410 ~~q~~~il~m~l~~lt-~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ 466 (738)
T TIGR01061 410 ENQAEAIVSLRLYRLT-NTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEE 466 (738)
T ss_pred HHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566666665554444 34477999999999999999999999999888887777654
No 249
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.32 E-value=1.3e+03 Score=26.21 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=59.4
Q ss_pred hcchhhhHHHHHHHHH-HHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 519 IGEASDAVNEELQRIE-AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDK 597 (837)
Q Consensus 519 sG~~~e~v~eEL~RlE-AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~ 597 (837)
.|+.-+.+..++.||| ......+.-..+.+++.+. .+| .++..-+.+....-.-+.+.+.+...++..+..-.
T Consensus 105 ~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I-~~L-----~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~ 178 (294)
T COG1340 105 GGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKI-KEL-----RKELEDAKKALEENEKLKELKAEIDELKKKAREIH 178 (294)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888888888 4444444444466666654 122 12222334444444444444455555544433211
Q ss_pred H--HHhhhhhHHHHHHH------HHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 598 I--ALMKERAAIESEME------ILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 663 (837)
Q Consensus 598 ~--~llKerAa~e~e~q------~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~L 663 (837)
. .-|-..| =+|-.+ -.-.+|.+.|+|-+ .+-+++..+...|+++-.++.+|
T Consensus 179 eki~~la~ea-qe~he~m~k~~~~~De~Rkeade~he--------------~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 179 EKIQELANEA-QEYHEEMIKLFEEADELRKEADELHE--------------EFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 1111221 111111 12234555555543 34555666666666666666654
No 250
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=20.18 E-value=6.1e+02 Score=28.98 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=25.8
Q ss_pred HHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 626 ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 670 (837)
Q Consensus 626 q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL 670 (837)
+.+--+|-....|+++..+-+-++|.++|.-.+.|-.|=-|-+-|
T Consensus 169 iK~EQEKQKTeqEkQk~~ksqIklEQEkQKT~qeqqkliKeQKDf 213 (398)
T PF05917_consen 169 IKVEQEKQKTEQEKQKENKSQIKLEQEKQKTEQEQQKLIKEQKDF 213 (398)
T ss_pred HHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455666666666666666666666666665555443
No 251
>PRK00957 methionine synthase; Provisional
Probab=20.16 E-value=1.1e+02 Score=32.75 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=37.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhhhcc
Q 003228 674 RAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAG 725 (837)
Q Consensus 674 R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~ 725 (837)
+.|+.++.....+..++..++.+.=+..||+|++|+.++.+-.....|.-.|
T Consensus 21 ~~~~~~~~~~~~~~~~ai~~~v~~q~~~Gld~vtdGe~r~~~~~~f~~~l~G 72 (305)
T PRK00957 21 KDKIKGFFGLYDPYKPAIEEAVADQVKAGIDIISDGQVRGDMVEIFASNMPG 72 (305)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCccCchHHHHHhcCCC
Confidence 3466666666677777788888888999999999999997654444444434
No 252
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=20.01 E-value=6.4e+02 Score=22.57 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhhcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhhhhHHHHHHhHHHH
Q 003228 737 AQSLVDKLKAMANDVS-----GKSKEIINTIIHKILLFISNLKKWASKASMRA--AELKDATILKAKGSVQELQQSTAEF 809 (837)
Q Consensus 737 a~~l~~k~~~m~~~~~-----~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (837)
-.+.+..|+.|...++ ...|+=|..+++++..++..+.+.+.++...+ ................+.+.+..+|
T Consensus 8 in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~f 87 (102)
T PF14523_consen 8 INQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEF 87 (102)
T ss_dssp HHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554 44556666777777777777777777766651 1111122233344445555555555
Q ss_pred hhhh
Q 003228 810 RSNL 813 (837)
Q Consensus 810 ~~~~ 813 (837)
....
T Consensus 88 q~~q 91 (102)
T PF14523_consen 88 QKAQ 91 (102)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
Done!