Query 003228
Match_columns 837
No_of_seqs 152 out of 228
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 17:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pyw_A S-layer protein SAP; SL 100.0 9.4E-29 3.2E-33 240.0 15.7 169 308-520 3-174 (203)
2 4aq1_A SBSB protein; structura 99.9 5.1E-24 1.8E-28 243.2 0.0 165 308-520 2-167 (892)
3 3pyw_A S-layer protein SAP; SL 99.7 6.6E-18 2.3E-22 164.0 12.3 109 386-520 3-112 (203)
4 4aq1_A SBSB protein; structura 99.4 3.5E-14 1.2E-18 163.1 0.0 115 299-447 52-167 (892)
5 3oja_B Anopheles plasmodium-re 90.8 1.3 4.5E-05 48.3 11.4 55 599-660 524-578 (597)
6 2dfs_A Myosin-5A; myosin-V, in 90.4 4.9 0.00017 48.9 16.7 11 526-536 902-912 (1080)
7 3oja_B Anopheles plasmodium-re 87.9 7.1 0.00024 42.7 14.4 56 634-693 524-579 (597)
8 1i84_S Smooth muscle myosin he 87.6 1.2 4E-05 54.1 8.8 17 563-579 899-915 (1184)
9 2no2_A HIP-I, huntingtin-inter 87.0 18 0.00062 33.1 15.8 100 546-671 3-102 (107)
10 2dfs_A Myosin-5A; myosin-V, in 86.7 13 0.00045 45.2 17.1 28 641-668 1013-1040(1080)
11 3na7_A HP0958; flagellar bioge 86.5 30 0.001 35.0 25.2 57 562-618 45-106 (256)
12 3vkg_A Dynein heavy chain, cyt 84.8 21 0.00072 48.3 18.7 25 388-412 1710-1735(3245)
13 3vkg_A Dynein heavy chain, cyt 84.4 61 0.0021 44.1 22.6 55 614-668 1929-1983(3245)
14 2fxo_A Myosin heavy chain, car 80.5 36 0.0012 31.5 15.8 72 590-668 36-107 (129)
15 3ghg_A Fibrinogen alpha chain; 79.6 13 0.00046 42.4 12.2 15 551-565 77-91 (562)
16 2i1j_A Moesin; FERM, coiled-co 78.2 2.8 9.5E-05 47.5 6.4 96 563-658 321-426 (575)
17 3k29_A Putative uncharacterize 72.8 79 0.0027 31.5 17.2 66 565-636 11-76 (169)
18 3g9g_A Suppressor of yeast pro 69.8 1.1E+02 0.0039 32.0 16.7 47 735-781 202-248 (287)
19 1f5n_A Interferon-induced guan 68.4 75 0.0026 36.4 14.9 18 347-364 285-302 (592)
20 3tnu_A Keratin, type I cytoske 67.3 58 0.002 30.1 11.5 114 551-671 5-125 (131)
21 2b5u_A Colicin E3; high resolu 65.2 2E+02 0.0067 33.1 18.4 38 646-683 401-441 (551)
22 3na7_A HP0958; flagellar bioge 60.1 1.5E+02 0.0051 29.9 19.7 74 595-671 90-163 (256)
23 1fio_A SSO1 protein; four heli 58.6 73 0.0025 30.2 10.8 96 729-829 13-116 (196)
24 1u5p_A Spectrin alpha chain, b 56.6 1.3E+02 0.0045 28.2 19.4 57 733-790 140-203 (216)
25 1eq1_A Apolp-III, apolipophori 55.0 34 0.0012 33.3 7.7 91 742-832 59-149 (166)
26 1f5n_A Interferon-induced guan 54.3 75 0.0026 36.4 11.7 7 568-574 492-498 (592)
27 2b5u_A Colicin E3; high resolu 54.1 3E+02 0.01 31.6 16.6 75 528-608 301-376 (551)
28 2p22_A Suppressor protein STP2 53.9 92 0.0031 30.9 10.8 121 543-664 7-135 (174)
29 1jcd_A Major outer membrane li 49.1 64 0.0022 26.5 7.3 44 641-688 5-48 (52)
30 1x79_B RAB GTPase binding effe 48.2 1.3E+02 0.0043 28.2 10.1 34 611-644 65-98 (112)
31 3hnw_A Uncharacterized protein 48.1 74 0.0025 30.2 8.8 26 565-590 70-95 (138)
32 3iox_A AGI/II, PA; alpha helix 44.5 3E+02 0.01 31.4 14.2 15 525-539 13-27 (497)
33 3oja_A Leucine-rich immune mol 44.0 2.7E+02 0.0094 29.7 13.5 14 614-627 412-425 (487)
34 3c98_B Syntaxin-1A; protein co 42.7 2.4E+02 0.0081 27.1 12.0 106 731-836 53-169 (279)
35 1fxk_C Protein (prefoldin); ar 40.9 2.1E+02 0.007 25.9 11.3 26 720-745 72-97 (133)
36 3mq9_A Bone marrow stromal ant 40.2 3.7E+02 0.013 28.6 16.1 71 569-663 396-466 (471)
37 1sjj_A Actinin; 3-helix bundle 39.9 4.8E+02 0.017 29.9 19.8 16 737-752 520-535 (863)
38 2inr_A DNA topoisomerase 4 sub 38.8 3.1E+02 0.011 31.3 13.3 57 622-679 437-493 (514)
39 3q8t_A Beclin-1; autophagy, AT 37.5 2.2E+02 0.0077 25.4 11.3 19 629-647 77-95 (96)
40 2ocy_A RAB guanine nucleotide 37.2 3.1E+02 0.01 26.8 14.8 23 567-589 69-91 (154)
41 1u4q_A Spectrin alpha chain, b 37.1 3.2E+02 0.011 27.0 15.9 161 595-794 36-207 (322)
42 1s35_A Beta-I spectrin, spectr 36.8 2.7E+02 0.0091 26.0 14.2 57 733-790 138-201 (214)
43 2xhe_B Syntaxin1; exocytosis, 35.8 2.7E+02 0.0093 28.2 11.3 96 727-826 50-167 (279)
44 1t6f_A Geminin; coiled-coil, c 34.6 33 0.0011 26.6 3.3 22 643-664 10-31 (37)
45 3tnu_B Keratin, type II cytosk 33.7 2.8E+02 0.0097 25.4 12.4 122 549-673 1-125 (129)
46 2zuo_A MVP, major vault protei 33.4 6.4E+02 0.022 30.6 15.2 101 511-612 682-784 (861)
47 3r2p_A Apolipoprotein A-I; amp 32.3 2.7E+02 0.0091 26.8 10.2 68 758-825 72-139 (185)
48 1wt6_A Myotonin-protein kinase 32.1 2.4E+02 0.0081 25.2 8.7 56 528-594 14-69 (81)
49 3ol1_A Vimentin; structural ge 31.4 3.1E+02 0.011 25.1 14.9 19 603-624 63-81 (119)
50 2i1j_A Moesin; FERM, coiled-co 30.8 89 0.0031 35.5 7.5 15 738-752 514-528 (575)
51 2no2_A HIP-I, huntingtin-inter 29.5 2.6E+02 0.0089 25.5 8.9 27 638-664 52-78 (107)
52 2eqb_B RAB guanine nucleotide 29.2 3.4E+02 0.011 24.9 13.7 57 521-591 5-61 (97)
53 3d2f_A Heat shock protein homo 28.7 3.7E+02 0.013 30.9 12.1 14 348-361 299-312 (675)
54 3vem_A Helicase protein MOM1; 28.6 1.7E+02 0.006 27.5 7.7 47 583-630 38-86 (115)
55 3opc_A Uncharacterized protein 28.2 3.6E+02 0.012 24.8 12.7 120 642-775 6-131 (154)
56 1yvi_A Histidine-containing ph 27.7 3.1E+02 0.01 25.4 9.3 59 741-799 27-94 (149)
57 3zrx_A AF1503 protein, osmolar 27.2 2.3E+02 0.0078 22.6 7.5 25 755-779 35-59 (115)
58 3i00_A HIP-I, huntingtin-inter 26.0 2.4E+02 0.0081 26.4 8.2 87 576-669 14-101 (120)
59 2spc_A Spectrin; cytoskeleton; 25.8 95 0.0033 26.4 5.2 58 733-791 34-98 (107)
60 3lay_A Zinc resistance-associa 25.4 2.7E+02 0.0092 27.4 8.9 20 637-656 110-129 (175)
61 3swk_A Vimentin; cytoskeleton, 25.3 1.8E+02 0.0061 25.5 6.9 48 623-670 7-54 (86)
62 3qh9_A Liprin-beta-2; coiled-c 24.9 1.9E+02 0.0064 25.9 6.8 51 612-663 26-77 (81)
63 3mov_A Lamin-B1; LMNB1, B-type 24.8 3.8E+02 0.013 24.0 9.5 74 592-671 9-85 (95)
64 3bas_A Myosin heavy chain, str 24.0 3.6E+02 0.012 23.5 9.4 17 594-610 41-57 (89)
65 2p22_A Suppressor protein STP2 24.0 2.8E+02 0.0096 27.5 8.7 64 609-672 9-77 (174)
66 1x79_B RAB GTPase binding effe 24.0 4.5E+02 0.015 24.6 11.1 68 554-628 29-96 (112)
67 1cun_A Protein (alpha spectrin 23.7 4.4E+02 0.015 24.4 16.5 58 733-791 137-201 (213)
68 2p2u_A HOST-nuclease inhibitor 23.3 3.2E+02 0.011 26.5 8.9 102 641-747 17-119 (171)
69 3q8t_A Beclin-1; autophagy, AT 23.2 4E+02 0.014 23.7 10.7 70 580-656 10-79 (96)
70 1ud0_A HSC70, 70 kDa heat-shoc 23.1 2.6E+02 0.0087 24.4 7.5 44 732-778 4-49 (113)
71 2a01_A Apolipoprotein A-I; fou 22.9 5.9E+02 0.02 25.6 11.1 42 794-835 195-236 (243)
72 1ik9_A DNA repair protein XRCC 22.7 4.5E+02 0.015 26.5 10.1 65 518-584 129-204 (213)
73 2xcs_B DNA gyrase subunit B, D 22.4 1E+03 0.035 28.2 14.7 58 622-680 620-677 (692)
74 2a01_A Apolipoprotein A-I; fou 21.9 2.5E+02 0.0084 28.3 8.1 42 795-836 174-215 (243)
75 4egx_A Kinesin-like protein KI 21.2 1.7E+02 0.0057 28.7 6.5 13 555-567 22-34 (184)
76 4aj5_K Spindle and kinetochore 21.0 5.5E+02 0.019 24.5 9.5 105 572-677 7-120 (123)
77 1nfn_A Apolipoprotein E3; lipi 20.5 4E+02 0.014 26.1 9.0 35 801-835 132-166 (191)
78 1gmj_A ATPase inhibitor; coile 20.1 3.9E+02 0.013 24.0 7.9 48 652-699 24-71 (84)
No 1
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.96 E-value=9.4e-29 Score=240.01 Aligned_cols=169 Identities=20% Similarity=0.181 Sum_probs=132.3
Q ss_pred cccccC-CCceeeccccchhhHHHHHhcccccccC-CccCCCCCccHHHHHHHHHHhcccccccccccccccccccCCCC
Q 003228 308 AALQVL-PGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTD 385 (837)
Q Consensus 308 aaf~v~-p~rv~VPvavD~~qIeALAaLGILkgiE-gtF~Pn~pITRAEFArwLVRAls~L~R~p~~kI~Pam~is~st~ 385 (837)
.+|.+. .++ -+. .+|+.|..+|+++|++ ++|+|+++|||+|||.||+++++. + ......
T Consensus 3 ~~F~Dv~~~~----wa~--~~I~~l~~~gii~G~~dg~F~P~~~iTR~e~a~~l~r~~~~----------~---~~~~~~ 63 (203)
T 3pyw_A 3 KTFPDVPADH----WGI--DSINYLVEKGAVKGNDKGMFEPGKELTRAEAATMMAQILNL----------P---IDKDAK 63 (203)
T ss_dssp CCBTTBCTTS----TTH--HHHHHHHHTTSCCCCTTSCCCTTCBCBHHHHHHHHHHHTTC----------C---CCTTCC
T ss_pred CCCcCCCCCc----HHH--HHHHHHHHCcCEecCCCCeECCCCCchHHHHHHHHHHHhCC----------C---CCcCCC
Confidence 357444 555 233 4899999999999997 699999999999999999999871 1 112345
Q ss_pred CCccCCCCCCCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHHHHH-HhhcCCchhhhhhhhccC
Q 003228 386 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMA-LEKRQLPEANKKILYQLS 464 (837)
Q Consensus 386 ~AF~DV~~ddPyf~yIQAAAEAGIIsGkLSG~~~~s~dDG~~tFrPDsPITRQELAvwkVA-Le~~~LP~ad~k~L~~~s 464 (837)
..|+||+ +||++.+|+.|+++|||.|+ +++ |+|+++|||+||+.|+++ +++.. .. ......
T Consensus 64 ~~F~Dv~-~~w~~~~i~~a~~~Gii~g~-----------~~~-F~P~~~iTR~e~a~~l~r~~~~~~---~~--~~~~~~ 125 (203)
T 3pyw_A 64 PSFADSQ-GQWYTPFIAAVEKAGVIKGT-----------GNG-FEPNGKIDRVSMASLLVEAYKLDT---KV--NGTPAT 125 (203)
T ss_dssp CSCGGGC-SSTTHHHHHHHHHTTSSCCC-----------SSC-CCTTSBCBHHHHHHHHHHHHTGGG---GS--SSCCCC
T ss_pred CCCCCCC-cHHHHHHHHHHHHCcCeecC-----------CCC-CCCCCcccHHHHHHHHHHHhcccc---cc--ccccCC
Confidence 6899995 99999999999999999997 234 999999999999999875 43321 10 011245
Q ss_pred CcccccCcCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHhc
Q 003228 465 GFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG 520 (837)
Q Consensus 465 gF~DadkIspwA~~AVaadL~aGd~GII~~vfG~tg~FqPnkPVTRAEAAAaL~sG 520 (837)
.|.|...| +|+.++|...... ||+. |..+.|+|++++||+|||++|++-
T Consensus 126 ~f~D~~~i-~wa~~~v~~~~~~---Gi~~---g~~~~f~P~~~iTRaE~A~~l~r~ 174 (203)
T 3pyw_A 126 KFKDLETL-NWGKEKANILVEL---GISV---GTGDQWEPKKTVTKAEAAQFIAKT 174 (203)
T ss_dssp CCHHHHTC-SSSHHHHHHHHHT---TCSC---CCSSCCCTTSBCBHHHHHHHHHHH
T ss_pred CCCCCCcc-HHHHHHHHHHHHC---cCEe---CCCCCcCCCCCCcHHHHHHHHHHH
Confidence 79999999 8999999877755 4653 444589999999999999999964
No 2
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.87 E-value=5.1e-24 Score=243.17 Aligned_cols=165 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred cccccCCCceeeccccchhhHHHHHhcccccccC-CccCCCCCccHHHHHHHHHHhcccccccccccccccccccCCCCC
Q 003228 308 AALQVLPGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDL 386 (837)
Q Consensus 308 aaf~v~p~rv~VPvavD~~qIeALAaLGILkgiE-gtF~Pn~pITRAEFArwLVRAls~L~R~p~~kI~Pam~is~st~~ 386 (837)
++|.++++++ . .+|+.|+.+|+++|++ +.|+|+++|||+|||.||+|+++. +. .....+
T Consensus 2 ASFsDV~gHW-----k--eaIe~LaekGIIkGY~DGTFrPdkpITRAEFAaMLvRALGL----------e~---~saas~ 61 (892)
T 4aq1_A 2 ASFTDVAPQY-----K--DAIDFLVSTGATKGKTETKFGVYDEITRLDAAVILARVLKL----------DV---GNAKDA 61 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCCHHH-----H--HHHHHHHHCCCEeeCCCCcCCCCcchhHHHHHHHHHHHhCC----------Cc---ccccCC
Confidence 3687777652 3 4899999999999997 789999999999999999999861 11 112357
Q ss_pred CccCCCCCCCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHHHHHHhhcCCchhhhhhhhccCCc
Q 003228 387 AFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGF 466 (837)
Q Consensus 387 AF~DV~~ddPyf~yIQAAAEAGIIsGkLSG~~~~s~dDG~~tFrPDsPITRQELAvwkVALe~~~LP~ad~k~L~~~sgF 466 (837)
.|.||++ ||+.||+.|+++|||.|+. +++|+|+++|||+|||.|++++- +++... ....|
T Consensus 62 sFSDVp~--Wya~yIaaAveaGIIsGy~-----------DGTFrPnqpITRAEaAvMLvRAL--gL~~~~-----~~ssF 121 (892)
T 4aq1_A 62 GFTDVPK--DRAKYVNALVEAGVLNGKA-----------PGKFGAYDPLTRVEMAKIIANAH--KLKADD-----VKLPF 121 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcCCH--HHHHHHHHHHHCCCEecCC-----------CCcCCCCCCccHHHHHHHHHHHh--CCCCcc-----ccCCc
Confidence 8999964 7789999999999999983 23899999999999999987432 222211 23569
Q ss_pred ccccCcCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHhc
Q 003228 467 IDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG 520 (837)
Q Consensus 467 ~DadkIspwA~~AVaadL~aGd~GII~~vfG~tg~FqPnkPVTRAEAAAaL~sG 520 (837)
.|...+ |+ ++|...... |||.+. ..+.|+|++++||+|||+||++-
T Consensus 122 kDV~s~--WA-eaIaaAve~---GIIsGy--~DGtFrPn~~ITRAEAAvmL~RA 167 (892)
T 4aq1_A 122 TDVNDT--WA-PYVKALYKY---EVTKGK--TPTSFGAYQNITRGDFAQFVYRA 167 (892)
T ss_dssp ------------------------------------------------------
T ss_pred cCCcHH--HH-HHHHHHHHc---CCeecC--CCCcCCCCCcccHHHHHHHHHHH
Confidence 999864 88 888665543 565432 24689999999999999999965
No 3
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.74 E-value=6.6e-18 Score=164.04 Aligned_cols=109 Identities=23% Similarity=0.300 Sum_probs=87.2
Q ss_pred CCccCCCCCCCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHHHHHHhhcCCchhhhhhhhccCC
Q 003228 386 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSG 465 (837)
Q Consensus 386 ~AF~DV~~ddPyf~yIQAAAEAGIIsGkLSG~~~~s~dDG~~tFrPDsPITRQELAvwkVALe~~~LP~ad~k~L~~~sg 465 (837)
..|+||+.+||++.+|+.+++.|||.|+. +++|+|+++|||+|++.|++++- +++... .....
T Consensus 3 ~~F~Dv~~~~wa~~~I~~l~~~gii~G~~-----------dg~F~P~~~iTR~e~a~~l~r~~--~~~~~~----~~~~~ 65 (203)
T 3pyw_A 3 KTFPDVPADHWGIDSINYLVEKGAVKGND-----------KGMFEPGKELTRAEAATMMAQIL--NLPIDK----DAKPS 65 (203)
T ss_dssp CCBTTBCTTSTTHHHHHHHHHTTSCCCCT-----------TSCCCTTCBCBHHHHHHHHHHHT--TCCCCT----TCCCS
T ss_pred CCCcCCCCCcHHHHHHHHHHHCcCEecCC-----------CCeECCCCCchHHHHHHHHHHHh--CCCCCc----CCCCC
Confidence 47999999999999999999999999983 23899999999999999987543 233211 12356
Q ss_pred cccccCcCcchHHHHHHHHhcCcccceecccCC-CccccCCCCCcHHHHHHHHHhc
Q 003228 466 FIDIDKINPDAWPALLADLTAGEQGIIALAFGC-TRLFQPDKPVTNAQAAVALAIG 520 (837)
Q Consensus 466 F~DadkIspwA~~AVaadL~aGd~GII~~vfG~-tg~FqPnkPVTRAEAAAaL~sG 520 (837)
|.|.. +.|+.++|...... |||. |. .+ |+|++++||+|+|++|++.
T Consensus 66 F~Dv~--~~w~~~~i~~a~~~---Gii~---g~~~~-F~P~~~iTR~e~a~~l~r~ 112 (203)
T 3pyw_A 66 FADSQ--GQWYTPFIAAVEKA---GVIK---GTGNG-FEPNGKIDRVSMASLLVEA 112 (203)
T ss_dssp CGGGC--SSTTHHHHHHHHHT---TSSC---CCSSC-CCTTSBCBHHHHHHHHHHH
T ss_pred CCCCC--cHHHHHHHHHHHHC---cCee---cCCCC-CCCCCcccHHHHHHHHHHH
Confidence 99985 78999999877755 4653 43 35 9999999999999999853
No 4
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.38 E-value=3.5e-14 Score=163.11 Aligned_cols=115 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred CcCCCCccccccccCCCceeeccccchhhHHHHHhcccccccC-CccCCCCCccHHHHHHHHHHhccccccccccccccc
Q 003228 299 GIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPA 377 (837)
Q Consensus 299 gipAPSa~Saaf~v~p~rv~VPvavD~~qIeALAaLGILkgiE-gtF~Pn~pITRAEFArwLVRAls~L~R~p~~kI~Pa 377 (837)
|++........|.+.+... ..+|.++..+|++.+++ +.|+|+++|||+|||.||+|+++. +.
T Consensus 52 GLe~~saas~sFSDVp~Wy-------a~yIaaAveaGIIsGy~DGTFrPnqpITRAEaAvMLvRALgL----------~~ 114 (892)
T 4aq1_A 52 KLDVGNAKDAGFTDVPKDR-------AKYVNALVEAGVLNGKAPGKFGAYDPLTRVEMAKIIANAHKL----------KA 114 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccCCCCCcCCHHH-------HHHHHHHHHCCCEecCCCCcCCCCCCccHHHHHHHHHHHhCC----------CC
Confidence 3443333345785555431 25899999999999996 789999999999999999999871 11
Q ss_pred ccccCCCCCCccCCCCCCCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHHHHHH
Q 003228 378 MYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMAL 447 (837)
Q Consensus 378 m~is~st~~AF~DV~~ddPyf~yIQAAAEAGIIsGkLSG~~~~s~dDG~~tFrPDsPITRQELAvwkVAL 447 (837)
. .....|.|++ ++|+ .||+.|+++|||.|+. + ++|+|+++|||+|||.|+.++
T Consensus 115 ---~-~~~ssFkDV~-s~WA-eaIaaAve~GIIsGy~---------D--GtFrPn~~ITRAEAAvmL~RA 167 (892)
T 4aq1_A 115 ---D-DVKLPFTDVN-DTWA-PYVKALYKYEVTKGKT---------P--TSFGAYQNITRGDFAQFVYRA 167 (892)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ---c-cccCCccCCc-HHHH-HHHHHHHHcCCeecCC---------C--CcCCCCCcccHHHHHHHHHHH
Confidence 1 1357899996 5788 9999999999999983 2 379999999999999988754
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.75 E-value=1.3 Score=48.33 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 599 ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 660 (837)
Q Consensus 599 ~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k 660 (837)
.+.+.+.+++.+++.+-.|+.|++++-.++- ..+++++.|..+++...+++.++.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~-------~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLD-------NKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666666666654433 234444555555444444444443
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.37 E-value=4.9 Score=48.86 Aligned_cols=11 Identities=27% Similarity=0.604 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 003228 526 VNEELQRIEAE 536 (837)
Q Consensus 526 v~eEL~RlEAE 536 (837)
.+.++.+|.+|
T Consensus 902 aRr~~~~Lk~e 912 (1080)
T 2dfs_A 902 AKRELKKLKIE 912 (1080)
T ss_dssp HHHHTTTC---
T ss_pred HHHHHHHHHHH
Confidence 34455555433
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.89 E-value=7.1 Score=42.65 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=28.4
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003228 634 EISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 693 (837)
Q Consensus 634 ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEe 693 (837)
+.-..++.++++..+++.-.+++.+++-.++..|+.+.-++ +|..+.++.=+-|++
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~----~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR----QETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHH
Confidence 33444555555555555555555666666666666554443 333333333344443
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.61 E-value=1.2 Score=54.10 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=7.3
Q ss_pred HHHHHHHhhHHHHHHHH
Q 003228 563 KELSMEREKIDVVEKMA 579 (837)
Q Consensus 563 ~el~~Er~~~~~vek~~ 579 (837)
.++..++.....++..+
T Consensus 899 ~~L~~e~~~l~~~e~~l 915 (1184)
T 1i84_S 899 EKLQAETELYAEAEEMR 915 (1184)
T ss_dssp HHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444443333333
No 9
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=87.03 E-value=18 Score=33.13 Aligned_cols=100 Identities=24% Similarity=0.334 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH
Q 003228 546 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL 625 (837)
Q Consensus 546 ~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 625 (837)
|..|+-+. .|+. +.|...|.--.++++.-.+.-.++++++ ...-.-++.|+..|-.|+.|+..-.
T Consensus 3 Hi~LLRK~-aE~~----KqL~~~~q~~~e~e~~k~eL~~~~~~~~----------~~~~~k~~eq~~~le~lk~eL~~~~ 67 (107)
T 2no2_A 3 HADLLRKN-AEVT----KQVSMARQAQVDLEREKKELEDSLERIS----------DQGQRKTQEQLEVLESLKQELATSQ 67 (107)
T ss_dssp HHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454442 4443 5566677777777777777777777766 2223345667788888888888776
Q ss_pred HHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 626 ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (837)
Q Consensus 626 q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 671 (837)
+-|-. |+.-+...+.....++.....|+.||.+|.
T Consensus 68 ~el~~-----------lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 68 RELQV-----------LQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544 555555555666667767788888888875
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.75 E-value=13 Score=45.18 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 641 RINMLRKEAENENQEIARLQYELEVERK 668 (837)
Q Consensus 641 ~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 668 (837)
++++++.+++.+...+...+..|+....
T Consensus 1013 ~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 1013 WADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333333433333
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.45 E-value=30 Score=35.01 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=26.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHhH
Q 003228 562 EKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIAL-----MKERAAIESEMEILSKLR 618 (837)
Q Consensus 562 ~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~l-----lKerAa~e~e~q~L~~Lr 618 (837)
...+..-+..+..+++.......+++..+....+....+ -||-.++..|.+.+..-.
T Consensus 45 ~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555554433333322 244445555554444333
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.83 E-value=21 Score=48.27 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=12.2
Q ss_pred ccCCCCCCCCh-HHHHHHHHcCCccc
Q 003228 388 FDDITPEDPDF-SSIQGLAEAGLISS 412 (837)
Q Consensus 388 F~DV~~ddPyf-~yIQAAAEAGIIsG 412 (837)
|+|-.--++.| .+|..+...|=|++
T Consensus 1710 ~tD~qi~~e~FLE~IN~lL~sGEVP~ 1735 (3245)
T 3vkg_A 1710 FDESNVLESSFLERMNTLLAGGEVPG 1735 (3245)
T ss_dssp EEGGGCSSTHHHHHHHHHHHHSCCTT
T ss_pred EeccccccHHHHHHHHHHhccCCccc
Confidence 44433333333 35566666666654
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.43 E-value=61 Score=44.09 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=26.6
Q ss_pred HHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 668 (837)
Q Consensus 614 L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 668 (837)
|..-...|++|-+.|+..+.++..=+...+++..+++.+.+++.+.|...+.+++
T Consensus 1929 L~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~ 1983 (3245)
T 3vkg_A 1929 LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQV 1983 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555444444444455555555555555444444443333
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.52 E-value=36 Score=31.49 Aligned_cols=72 Identities=19% Similarity=0.352 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 590 RAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 668 (837)
Q Consensus 590 r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 668 (837)
|.+-+..+..++.++..+--+.+.=..+-.+.++++.+|...+.+.- .-..+++.+.+...+.-..|.++|+
T Consensus 36 r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe-------~~l~el~~rleeeee~~~~L~~~kk 107 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLE-------AKVKEMNKRLEDEEEMNAELTAKKR 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677777777776666666777788899988877766544 3333334444444444444444443
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.57 E-value=13 Score=42.36 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003228 551 AEVEKEINESFEKEL 565 (837)
Q Consensus 551 ~~~~~di~~~f~~el 565 (837)
.+.++|+.+++...+
T Consensus 77 sKnsKdseqy~k~~~ 91 (562)
T 3ghg_A 77 QKNNKDSHSLTTNIM 91 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhchhHHHHHHHHH
Confidence 333667766665443
No 16
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.20 E-value=2.8 Score=47.53 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=15.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhh-hhhHHHHHHHHHHHhHHHHHHHHHHhhhcc
Q 003228 563 KELSMEREKIDVVEKMAEEARQELERLRAEREV---------DKIALMK-ERAAIESEMEILSKLRREVEEQLESLMSNK 632 (837)
Q Consensus 563 ~el~~Er~~~~~vek~~eea~~eLe~~r~ere~---------e~~~llK-erAa~e~e~q~L~~Lr~EVde~~q~L~s~~ 632 (837)
.+|..||.....+|+--.+...-|..+..+-.. +.+.+|- ++.-.+.|.++|.+-+.|.+++.++|....
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~ 400 (575)
T 2i1j_A 321 EKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETK 400 (575)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444444444333332 3333333 344567788999999999999999999998
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Q 003228 633 VEISYEKERINMLRKEAENENQEIAR 658 (837)
Q Consensus 633 ~ei~~Ek~~l~kL~~~~e~~~q~i~~ 658 (837)
..-..|+++|+.-..+.+.+-..+.+
T Consensus 401 ~~~~~e~~~l~~~~~~~~~~~~~~~~ 426 (575)
T 2i1j_A 401 NMEAAERQKLEDEIRAKQEEVSRIQQ 426 (575)
T ss_dssp --------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888876555555544444433
No 17
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=72.83 E-value=79 Score=31.47 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=40.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehh
Q 003228 565 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS 636 (837)
Q Consensus 565 l~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~ 636 (837)
|.+-+.+.++.||.+-..+-.||.++..-.+..+++=|- ..+-++-+.-||+++|. .-.|+++-.|
T Consensus 11 ~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~---~~h~~~k~~qlre~~d~---gtt~~~i~~m 76 (169)
T 3k29_A 11 LSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKV---KNHYMQKIRQLREQLDD---GTTSDAILKM 76 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc---CCCcHHHHHH
Confidence 344567788899999999988888887554444433332 23344557778877663 3444444444
No 18
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=69.77 E-value=1.1e+02 Score=32.04 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003228 735 SRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKAS 781 (837)
Q Consensus 735 ~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~ 781 (837)
.+|-.+.++++.+-..=---.+++|.++-.++...+....+-..+..
T Consensus 202 s~aP~~fe~fQ~lEEeRL~~Lkd~L~~y~~~~sd~~~~~~~~~E~~~ 248 (287)
T 3g9g_A 202 QQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVM 248 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888776554445566666666666665555444444443
No 19
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.40 E-value=75 Score=36.35 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=12.7
Q ss_pred CCCccHHHHHHHHHHhcc
Q 003228 347 GDLCIRREYARWLVSASS 364 (837)
Q Consensus 347 n~pITRAEFArwLVRAls 364 (837)
+.++|=..|+.++-...+
T Consensus 285 g~~vtG~~L~~l~~~yv~ 302 (592)
T 1f5n_A 285 GIQVNGPRLESLVLTYVN 302 (592)
T ss_dssp TEECBHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHH
Confidence 468898888888654444
No 20
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.27 E-value=58 Score=30.14 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHhH-HHHHHHHH
Q 003228 551 AEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEILSKLR-REVEEQLE 626 (837)
Q Consensus 551 ~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~L~~Lr-~EVde~~q 626 (837)
.+-+.|+...|..|+..=+.....--..+..++.|+-++|. .-+-++..+.+.++++|+....+-.-. .++. .++
T Consensus 5 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~-~~q 83 (131)
T 3tnu_A 5 EKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA-QIQ 83 (131)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 33455665555554322111111111122334444444443 223344555566666666544332211 1111 122
Q ss_pred HhhhcceehhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 003228 627 SLMSNKVEISYEKERINMLRKEAEN---ENQEIARLQYELEVERKALS 671 (837)
Q Consensus 627 ~L~s~~~ei~~Ek~~l~kL~~~~e~---~~q~i~~~k~~LE~EkkAL~ 671 (837)
.. |..=...|++++.+++. +.|.+.++|--|+.|..+-+
T Consensus 84 ~~------i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 84 EM------IGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11113446666666665 46789999999999987764
No 21
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=65.21 E-value=2e+02 Score=33.07 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHH
Q 003228 646 RKEAENENQEIARLQYELEVERKALSMA---RAWAEDEAKR 683 (837)
Q Consensus 646 ~~~~e~~~q~i~~~k~~LE~EkkAL~m~---R~W~EdEA~r 683 (837)
+.++.+++-....++-++---+-||+.+ |-=.|++.|-
T Consensus 401 ~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ 441 (551)
T 2b5u_A 401 QTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRS 441 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhhhhhhcccchhhhhhh
Confidence 3344444444444444444455566665 5555555554
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=60.08 E-value=1.5e+02 Score=29.93 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=34.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 595 VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (837)
Q Consensus 595 ~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 671 (837)
+++..|.||-..++.+.+.| ..++-+..+++-..+..+..-+..+..+..++.....++...-.+++.|.++|.
T Consensus 90 kE~~aL~kEie~~~~~i~~l---E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQA---NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655444444333 334444433333333334444444555555555555555544455554444443
No 23
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=58.57 E-value=73 Score=30.22 Aligned_cols=96 Identities=8% Similarity=0.140 Sum_probs=61.0
Q ss_pred chHHHHHhHHHHHHHHHHhhhhccc--------chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHH
Q 003228 729 SVDQTVSRAQSLVDKLKAMANDVSG--------KSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQ 800 (837)
Q Consensus 729 ~~~~~~~ra~~l~~k~~~m~~~~~~--------~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (837)
.+..-|.+....+.+|+.+-..+.+ ..++-|+.+++.|..++..++..+..+...+.+... .........+
T Consensus 13 ~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~-~k~~~~~L~~ 91 (196)
T 1fio_A 13 QINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTN-KQAQAENSRQ 91 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH-HHHHHHHHHH
Confidence 4556677888888888888776432 355667777888888887777777776654422111 1223444556
Q ss_pred HHHHhHHHHhhhhcccchhhhhhhhhhHH
Q 003228 801 ELQQSTAEFRSNLTEGAKRVAGDCREGVE 829 (837)
Q Consensus 801 ~~~~~~~~~~~~~~~~~kr~~~~c~~gv~ 829 (837)
.++....+|...- .+..+.||.-+.
T Consensus 92 ~f~~~~~~fq~~Q----~~~~~~~k~~~~ 116 (196)
T 1fio_A 92 RFLKLIQDYRIVD----SNYKEENKEQAK 116 (196)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 6666666776655 566667776554
No 24
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=56.61 E-value=1.3e+02 Score=28.19 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=38.3
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHH
Q 003228 733 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFIS-------NLKKWASKASMRAAELKDA 790 (837)
Q Consensus 733 ~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~-------~l~~~~~~~~~~~~~~~~~ 790 (837)
.+.-++.|+.|.+.+..++...- ..|..|+..-..||. .|++++..+..+...|...
T Consensus 140 dl~~v~~ll~kh~~~~~el~~~~-~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~ 203 (216)
T 1u5p_A 140 DLTGVQNLRKKHKRLEAELAAHE-PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQL 203 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46667889999999988887543 356667777666664 4556666655555555554
No 25
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=54.96 E-value=34 Score=33.31 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=76.4
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhh
Q 003228 742 DKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVA 821 (837)
Q Consensus 742 ~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~ 821 (837)
.-|+.--.|.+||.++.|..--+.|..--..||.---.+.+++..|+|.-..-+..-+++.|.-+-++++.+-+--++++
T Consensus 59 ~slq~al~dangkakeALEq~R~nlektAeeLRkaHPdVE~qA~~lrdkLqaAVQ~t~qesqkLaKeVasn~eetN~KLa 138 (166)
T 1eq1_A 59 SSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLA 138 (166)
T ss_dssp HHHHHHHTTCSSTHHHHHHHHHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhh
Confidence 34444556788999999999999998888888888888889999999987778888899999999999999999989888
Q ss_pred hhhhhhHHhhh
Q 003228 822 GDCREGVEKLT 832 (837)
Q Consensus 822 ~~c~~gv~k~~ 832 (837)
--.+...+.|.
T Consensus 139 PkiK~Ay~dF~ 149 (166)
T 1eq1_A 139 PKIKQAYDDFV 149 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 87777665543
No 26
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=54.32 E-value=75 Score=36.35 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=2.5
Q ss_pred HHhhHHH
Q 003228 568 EREKIDV 574 (837)
Q Consensus 568 Er~~~~~ 574 (837)
||.|.++
T Consensus 492 ~~~~~e~ 498 (592)
T 1f5n_A 492 ERVKAES 498 (592)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 27
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=54.14 E-value=3e+02 Score=31.64 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 003228 528 EELQRIEAESAAENAVS-EHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAA 606 (837)
Q Consensus 528 eEL~RlEAE~~a~~av~-~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa 606 (837)
||=+|.++|+....-+. |+.+ .++.+.++++- ++-..+-++|..-.+++|.+++.+|.. -.+-++..++++-.
T Consensus 301 eee~r~~qew~~~hp~~~Aer~-~e~a~ael~~a-~k~~a~~~er~~~t~~~~~~~~~~~~~----~n~~~~~~~~~~~~ 374 (551)
T 2b5u_A 301 DEENRRQQEWDATHPVEAAERN-YERARAELNQA-NEDVARNQERQAKAVQVYNSRKSELDA----ANKTLADAIAEIKQ 374 (551)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCcHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHh----hhhHHHHHHHhhhh
Confidence 34455555554332222 2222 45556677522 333333466667788899999988843 44555566666655
Q ss_pred HH
Q 003228 607 IE 608 (837)
Q Consensus 607 ~e 608 (837)
..
T Consensus 375 f~ 376 (551)
T 2b5u_A 375 FN 376 (551)
T ss_dssp HG
T ss_pred hh
Confidence 54
No 28
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=53.91 E-value=92 Score=30.92 Aligned_cols=121 Identities=11% Similarity=0.151 Sum_probs=77.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhH
Q 003228 543 VSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA----RQELERLRAEREVDKIALMKERAAIESEMEILSKLR 618 (837)
Q Consensus 543 v~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea----~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr 618 (837)
-..|.+|++.++--|+++.+.-.....+.++..+..++.+ ..+|..-...-+.....|-+++..++.+.+.|..=.
T Consensus 7 ~~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~ 86 (174)
T 2p22_A 7 PTNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR 86 (174)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999988888888888876666433 445555554455555555566666666655555422
Q ss_pred HHHHHHHHHhh-hcc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 619 REVEEQLESLM-SNK---VEISYEKERINMLRKEAENENQEIARLQYELE 664 (837)
Q Consensus 619 ~EVde~~q~L~-s~~---~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE 664 (837)
.++++.... . ++. =+++.+..-+.+..=++-.+..+|.++=|.|.
T Consensus 87 ~k~~e~~~~-~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~ 135 (174)
T 2p22_A 87 AKVQQFSST-SHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLS 135 (174)
T ss_dssp HHHHHHTTS-SCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233332211 1 011 12344555666777788888888888888886
No 29
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=49.11 E-value=64 Score=26.50 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003228 641 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 688 (837)
Q Consensus 641 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A 688 (837)
.+++|..+++.=...|..|++ +..+|+-.-.=+.+||.|+.+|-
T Consensus 5 ki~~Lss~V~~L~~kVdqLss----dV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASN----DANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777666666666666 33444444446889999998874
No 30
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=48.20 E-value=1.3e+02 Score=28.21 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=22.5
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHH
Q 003228 611 MEILSKLRREVEEQLESLMSNKVEISYEKERINM 644 (837)
Q Consensus 611 ~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~k 644 (837)
.+.++.++.+|-+++..|+-.|-.|.+|=.+|++
T Consensus 65 qq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 65 QQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788889999999888877777776555543
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.09 E-value=74 Score=30.20 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=11.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003228 565 LSMEREKIDVVEKMAEEARQELERLR 590 (837)
Q Consensus 565 l~~Er~~~~~vek~~eea~~eLe~~r 590 (837)
+...++....++..+++...|+..++
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK 95 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLK 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333333
No 32
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=44.48 E-value=3e+02 Score=31.37 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHh
Q 003228 525 AVNEELQRIEAESAA 539 (837)
Q Consensus 525 ~v~eEL~RlEAE~~a 539 (837)
....||+|+++.|..
T Consensus 13 ~yq~elarvqkana~ 27 (497)
T 3iox_A 13 AYQTELARVQKANAD 27 (497)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346678888877764
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.02 E-value=2.7e+02 Score=29.75 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=5.8
Q ss_pred HHHhHHHHHHHHHH
Q 003228 614 LSKLRREVEEQLES 627 (837)
Q Consensus 614 L~~Lr~EVde~~q~ 627 (837)
+.......++|.+.
T Consensus 412 ~~~~~~~~~~~~~~ 425 (487)
T 3oja_A 412 LRAIVKRYEEMYVE 425 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 34
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=42.67 E-value=2.4e+02 Score=27.13 Aligned_cols=106 Identities=10% Similarity=0.125 Sum_probs=51.8
Q ss_pred HHHHHhHHHHHHHHHHhhhhcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHhhhhH
Q 003228 731 DQTVSRAQSLVDKLKAMANDVS------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDAT-----ILKAKGSV 799 (837)
Q Consensus 731 ~~~~~ra~~l~~k~~~m~~~~~------~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 799 (837)
...|..-...++.|..++..+. ....+-+..+++.|..++..++..+..+........... +.-.....
T Consensus 53 ~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~i~~~~~qt 132 (279)
T 3c98_B 53 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH 132 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Confidence 3344444555555555544432 234455667777777777666666555544333222110 00001111
Q ss_pred HHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhcc
Q 003228 800 QELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFK 836 (837)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~~rfk 836 (837)
.-+........+...+--++++.-|++-|.+++++..
T Consensus 133 n~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~ 169 (279)
T 3c98_B 133 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG 169 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1222222333333334446677788888888887653
No 35
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=40.93 E-value=2.1e+02 Score=25.93 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=20.1
Q ss_pred hhhhcccccchHHHHHhHHHHHHHHH
Q 003228 720 MWVNAGKQFSVDQTVSRAQSLVDKLK 745 (837)
Q Consensus 720 ~w~~~~~~~~~~~~~~ra~~l~~k~~ 745 (837)
-.++-|..+-|+.++.-|..++++=.
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~ 97 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQK 97 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHH
Confidence 45667888999999999977776533
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.25 E-value=3.7e+02 Score=28.64 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=42.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHH
Q 003228 569 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 648 (837)
Q Consensus 569 r~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~ 648 (837)
|.....++|-+.+++..|-++|+.---++...+-=++.+|.+ |-.++ .||++|..+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--------------~~~~~~~~~ 451 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAE----------KAQGQ--------------KKVEELEGE 451 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH--------------HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHH----------HHHHH--------------HHHHHHHHH
Confidence 444555777788888888888777777776665555544433 22211 266666666
Q ss_pred HHHHHHHHHHHHHHH
Q 003228 649 AENENQEIARLQYEL 663 (837)
Q Consensus 649 ~e~~~q~i~~~k~~L 663 (837)
+...++.+.++..++
T Consensus 452 ~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 452 ITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665544433
No 37
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=39.89 E-value=4.8e+02 Score=29.92 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhhcc
Q 003228 737 AQSLVDKLKAMANDVS 752 (837)
Q Consensus 737 a~~l~~k~~~m~~~~~ 752 (837)
++.|+.|.+.+..++.
T Consensus 520 ve~ll~kh~~~~~~l~ 535 (863)
T 1sjj_A 520 IQGLTTAHEQFKATLP 535 (863)
T ss_dssp GHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 4555555555555553
No 38
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=38.79 E-value=3.1e+02 Score=31.27 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=42.8
Q ss_pred HHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003228 622 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 679 (837)
Q Consensus 622 de~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~Ed 679 (837)
+.|.+.|..-++-=.. +...+||..++....+++.+++..|..+.+-..+.+.+.++
T Consensus 437 e~qa~~IL~m~L~rLT-~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~ 493 (514)
T 2inr_A 437 EEQAEAIVMLQLYRLT-NTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNE 493 (514)
T ss_dssp HHHHHHHHTCCGGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566666665553322 34578899999999999999999999998888887777654
No 39
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.46 E-value=2.2e+02 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=9.4
Q ss_pred hhcceehhHHHHHHHHHHH
Q 003228 629 MSNKVEISYEKERINMLRK 647 (837)
Q Consensus 629 ~s~~~ei~~Ek~~l~kL~~ 647 (837)
-|-...|.|-+..|+||++
T Consensus 77 ~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 77 KSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3334445555555555543
No 40
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.16 E-value=3.1e+02 Score=26.84 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=8.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 003228 567 MEREKIDVVEKMAEEARQELERL 589 (837)
Q Consensus 567 ~Er~~~~~vek~~eea~~eLe~~ 589 (837)
.||.+...+|+-....-+|||.|
T Consensus 69 ~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 69 KENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 41
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=37.12 E-value=3.2e+02 Score=26.99 Aligned_cols=161 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 595 VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR 674 (837)
Q Consensus 595 ~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R 674 (837)
.....+|+.--.++.+......--..|..+-+.|.... -++...|......+...-+.+..+
T Consensus 36 ~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~---~~~~~~i~~~~~~l~~~w~~L~~~--------------- 97 (322)
T 1u4q_A 36 ASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSS---AFDTSQVKDKRETINGRFQRIKSM--------------- 97 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCC---SSCTHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhhhc----ccccchHHHHHhHHHHHHHHHHhhhh
Q 003228 675 AWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNA----GKQFSVDQTVSRAQSLVDKLKAMAND 750 (837)
Q Consensus 675 ~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~----~~~~~~~~~~~ra~~l~~k~~~m~~~ 750 (837)
+.+|-..|+++..-|. |..+...-..|... -...++-..+..++.++.|.+.+..+
T Consensus 98 ---------~~~R~~~Le~~~~l~~-----------f~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~~h~~l~~e 157 (322)
T 1u4q_A 98 ---------AAARRAKLNESHRLHQ-----------FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAE 157 (322)
T ss_dssp ---------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHH
Q ss_pred cccchHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHH
Q 003228 751 VSGKSKEIINTIIHKILLFI-------SNLKKWASKASMRAAELKDATILK 794 (837)
Q Consensus 751 ~~~~~~~~~~~~~~~i~~~i-------~~l~~~~~~~~~~~~~~~~~~~~~ 794 (837)
|..... .|..+...-..|+ ..|+.+...+..+...|.+.+..+
T Consensus 158 l~~~~~-~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~R 207 (322)
T 1u4q_A 158 LAAHEP-AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAAR 207 (322)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 42
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=36.84 E-value=2.7e+02 Score=26.02 Aligned_cols=57 Identities=7% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHH
Q 003228 733 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFIS-------NLKKWASKASMRAAELKDA 790 (837)
Q Consensus 733 ~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~-------~l~~~~~~~~~~~~~~~~~ 790 (837)
.+.-++.|+.|.+.+..++.. ..+-|..+.+.-..||. .|+.+...+..+...|+..
T Consensus 138 ~~~~v~~llkkh~~f~~~l~~-~~~~i~~l~~~a~~L~~~~h~~~~~I~~~~~~l~~rw~~l~~~ 201 (214)
T 1s35_A 138 SLEAAEAGIRKFEDFLGSMEN-NRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEK 201 (214)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888887777663 23445555665555553 3555555555555555554
No 43
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=35.76 E-value=2.7e+02 Score=28.19 Aligned_cols=96 Identities=3% Similarity=0.063 Sum_probs=62.7
Q ss_pred ccchHHHHHhHHHHHHHHHHhhhhccc--------chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------
Q 003228 727 QFSVDQTVSRAQSLVDKLKAMANDVSG--------KSKEIINTIIHKILLFISNLKKWASKASMRAAELKDA-------- 790 (837)
Q Consensus 727 ~~~~~~~~~ra~~l~~k~~~m~~~~~~--------~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~-------- 790 (837)
-..+..-|.+-...|.+|+.+....-+ ..+.-|+.+++.|..++..++..+..+...+..+...
T Consensus 50 ~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~ 129 (279)
T 2xhe_B 50 VKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTV 129 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Confidence 345667778888889999998776543 3466788888888888888888888887766443221
Q ss_pred ------HHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhh
Q 003228 791 ------TILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCRE 826 (837)
Q Consensus 791 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~ 826 (837)
...........++....+|...- +...+.||.
T Consensus 130 ~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q----~~y~e~~k~ 167 (279)
T 2xhe_B 130 STDLRIRQSQHSSLSRKFVKVMTRYNDVQ----AENKRRYGE 167 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 12233344556666666666554 444555554
No 44
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=34.57 E-value=33 Score=26.62 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003228 643 NMLRKEAENENQEIARLQYELE 664 (837)
Q Consensus 643 ~kL~~~~e~~~q~i~~~k~~LE 664 (837)
+||.++++.|.++|.+||.+-+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 6899999999999999998643
No 45
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.66 E-value=2.8e+02 Score=25.40 Aligned_cols=122 Identities=8% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH
Q 003228 549 LVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEILSKLRREVEEQL 625 (837)
Q Consensus 549 l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 625 (837)
|..+-+.|+...|..|+..=+.....--.-+..++.|+-++|. .-+-++..+.+-++++|+....+-.-...--..+
T Consensus 1 ia~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~ 80 (129)
T 3tnu_B 1 MANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA 80 (129)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 626 ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 673 (837)
Q Consensus 626 q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~ 673 (837)
+..... +-.|-.++..=....-.+.|.+.++|--|+.|..+-+-|
T Consensus 81 q~~i~~---lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 81 RNKLAE---LEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 46
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=33.41 E-value=6.4e+02 Score=30.63 Aligned_cols=101 Identities=21% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHhcchhhhHHHHHHHHH-HHHHhHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003228 511 AQAAVALAIGEASDAVNEELQRIE-AESAAENAVSE-HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELER 588 (837)
Q Consensus 511 AEAAAaL~sG~~~e~v~eEL~RlE-AE~~a~~av~~-~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~ 588 (837)
+||=--|-+-.|.+.+..|.+|.+ -|-.|+.+... -++-.|+.+.-..+.==+-=..=..-....+.+-.++-.||++
T Consensus 682 Qea~g~Lerqki~d~a~aE~~r~~Llel~a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~~~ael~~ 761 (861)
T 2zuo_A 682 QEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER 761 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Q 003228 589 LRAEREVDKIALMKERAAIESEME 612 (837)
Q Consensus 589 ~r~ere~e~~~llKerAa~e~e~q 612 (837)
++..|+.| ..+.|+++.+|-++.
T Consensus 762 ~~~~~~~e-l~~~~~~~ele~~k~ 784 (861)
T 2zuo_A 762 VKKVREME-LIYARAQLELEVSKA 784 (861)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHhhHHHH
No 47
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=32.35 E-value=2.7e+02 Score=26.81 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhh
Q 003228 758 IINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCR 825 (837)
Q Consensus 758 ~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~ 825 (837)
+..++-+....|=..|..-+..++.+..-+.+--..+....+.+++....-+...+.++...=++.-|
T Consensus 72 ~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr 139 (185)
T 3r2p_A 72 FWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQ 139 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333333333333333334444444433333333334444444444444444444444333333333
No 48
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.12 E-value=2.4e+02 Score=25.24 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 528 EELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAERE 594 (837)
Q Consensus 528 eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere 594 (837)
+=...|++|=.|.+++..+ | .+++.+. ..|..+|. +.|+..++..+|+++++.+-+
T Consensus 14 eLQSALeaEIqAKQ~i~EE--L-s~vr~~n-i~~eskL~-------eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSRE--M-EAIRTDN-QNFASQLR-------EAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH--H-HHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--H-HHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777777665 3 5554443 46666554 455555666666666665443
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=31.38 E-value=3.1e+02 Score=25.13 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHH
Q 003228 603 ERAAIESEMEILSKLRREVEEQ 624 (837)
Q Consensus 603 erAa~e~e~q~L~~Lr~EVde~ 624 (837)
.|+.+|.+ |..||..||+.
T Consensus 63 ~r~~~E~d---i~~lrK~lD~~ 81 (119)
T 3ol1_A 63 QREEAENT---LQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhhhcccHH
Confidence 35555544 45567777654
No 50
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.84 E-value=89 Score=35.45 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhhcc
Q 003228 738 QSLVDKLKAMANDVS 752 (837)
Q Consensus 738 ~~l~~k~~~m~~~~~ 752 (837)
+.|-++|+.|..++.
T Consensus 514 ~~lq~qL~~L~~el~ 528 (575)
T 2i1j_A 514 ERLHNQLKALKQDLA 528 (575)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 577777777776654
No 51
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.53 E-value=2.6e+02 Score=25.55 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 638 EKERINMLRKEAENENQEIARLQYELE 664 (837)
Q Consensus 638 Ek~~l~kL~~~~e~~~q~i~~~k~~LE 664 (837)
..+.|+.|+.+++.+..+|..+|..|+
T Consensus 52 q~~~le~lk~eL~~~~~el~~lq~~l~ 78 (107)
T 2no2_A 52 QLEVLESLKQELATSQRELQVLQGSLE 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888887777776554
No 52
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.21 E-value=3.4e+02 Score=24.89 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=40.3
Q ss_pred chhhhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003228 521 EASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA 591 (837)
Q Consensus 521 ~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ 591 (837)
..-+...++|.+|+.+..- +..+++ -.-.++..||.+...+|+-....-+|||.|-+
T Consensus 5 ~~~e~lre~l~~le~~~~~-------------~~~e~~-~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSD-------------RDDEVK-RLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHH-------------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-------------hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888866553 223343 24566777888888888888888888888876
No 53
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=28.71 E-value=3.7e+02 Score=30.90 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=10.3
Q ss_pred CCccHHHHHHHHHH
Q 003228 348 DLCIRREYARWLVS 361 (837)
Q Consensus 348 ~pITRAEFArwLVR 361 (837)
-.|||.+|..++--
T Consensus 299 ~~itr~~fe~l~~~ 312 (675)
T 3d2f_A 299 SQLSREELEELVKP 312 (675)
T ss_dssp EEEEHHHHHHHTHH
T ss_pred EEEeHHHHHHHHHH
Confidence 46899999876543
No 54
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=28.58 E-value=1.7e+02 Score=27.53 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhh
Q 003228 583 RQELERLRAEREVDKI--ALMKERAAIESEMEILSKLRREVEEQLESLMS 630 (837)
Q Consensus 583 ~~eLe~~r~ere~e~~--~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s 630 (837)
.+||+|+|-+.+.-.- +-.|-+--.||+++ +-.+|.+-|.++|.+-+
T Consensus 38 ~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E-~ae~k~KYD~~lqe~es 86 (115)
T 3vem_A 38 LHELEKLRRESENSKKTFEEKKSILKAELERK-MAEVQAEFRRKFHEVEA 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4566666665554332 33344445566665 66777777777776543
No 55
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=28.19 E-value=3.6e+02 Score=24.84 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HhHHHHHHHHHH---HHHHHHHHhHHHhh-cCcEEEEcCCccccc
Q 003228 642 INMLRKEAENENQEIARLQYELEVERKALSM-AR-AWAEDEAKRARE---QAKALEGARDRWER-QGIKVVVDKDLREES 715 (837)
Q Consensus 642 l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m-~R-~W~EdEA~r~~e---~A~vLEea~~rW~~-~gikv~vd~~~~~~~ 715 (837)
++.|..-++.+.+.+..+..-|+.|+.||.- -. .+.+.=+.+.++ +-.-++..|++|-. .|+. .+.
T Consensus 6 ~~~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~--------~~~ 77 (154)
T 3opc_A 6 SAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLA--------SGP 77 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------CCh
Confidence 3667788888888888899999999999877 32 233333333333 23345566666753 3432 221
Q ss_pred cccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 003228 716 DAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 775 (837)
Q Consensus 716 ~~~~~w~~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~ 775 (837)
..-..|... ...+.....+...++.+++.+- +.|| .+|..-+.++..+|..|+.
T Consensus 78 ~g~~~~~~~--~~~l~~~w~~l~~l~~~c~~~N-~~Ng---~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 78 AGTDAAAAA--HPELGPLWQALQANAAQAREHN-QRNG---TLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp HHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHh
Confidence 111234432 1234555555566666665542 3334 4566677777777777764
No 56
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=27.66 E-value=3.1e+02 Score=25.39 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=40.1
Q ss_pred HHHHHHhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHhhhhH
Q 003228 741 VDKLKAMANDVS--GKSKEIINTIIHKILLFISNLKKWA-------SKASMRAAELKDATILKAKGSV 799 (837)
Q Consensus 741 ~~k~~~m~~~~~--~~~~~~~~~~~~~i~~~i~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 799 (837)
++.|..|.++-+ ....++|..|++-...+|..|++-+ ..+..-+|.||-++.+.-...+
T Consensus 27 ~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGssa~lGa~~l 94 (149)
T 1yvi_A 27 FQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKV 94 (149)
T ss_dssp HHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhHHHHHhHHHH
Confidence 678888865554 6778999999999999999888765 3455566777766555433333
No 57
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=27.21 E-value=2.3e+02 Score=22.60 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 755 SKEIINTIIHKILLFISNLKKWASK 779 (837)
Q Consensus 755 ~~~~~~~~~~~i~~~i~~l~~~~~~ 779 (837)
..+=|..+...+..++..|++...+
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~~~~ 59 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQLADD 59 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444
No 58
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.95 E-value=2.4e+02 Score=26.39 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHH
Q 003228 576 EKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQE 655 (837)
Q Consensus 576 ek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~ 655 (837)
+.+.+....|++.+|.+-+.- .+--+..|..=+.=+..|..|++++-.- +-+...|-++|......++...+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~----~q~a~~e~e~Lr~e~~~l~~~~~~ 86 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHL----RQQAADDCEFLRAELDELRRQRED 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHH-HHHHHHHHH
Q 003228 656 IARLQ-YELEVERKA 669 (837)
Q Consensus 656 i~~~k-~~LE~EkkA 669 (837)
-..++ ...|+|++|
T Consensus 87 ~~~~q~~~~e~E~kA 101 (120)
T 3i00_A 87 TEKAQRSLSEIERKA 101 (120)
T ss_dssp ---------------
T ss_pred hHHHHHHHHHHHHHH
No 59
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=25.82 E-value=95 Score=26.41 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=38.7
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHH
Q 003228 733 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISN-------LKKWASKASMRAAELKDAT 791 (837)
Q Consensus 733 ~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~-------l~~~~~~~~~~~~~~~~~~ 791 (837)
.+..++.|+.|.+.+-.++... .+-|..|++.-..||.. |+.+..++..+...|++.+
T Consensus 34 ~l~~v~~Llkkh~~fe~~~~~~-~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~~~w~~L~~~~ 98 (107)
T 2spc_A 34 AGGNVEALIKKHEDFDKAINGH-EQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGL 98 (107)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888877643 45666667666677654 6666666666666666554
No 60
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.35 E-value=2.7e+02 Score=27.42 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003228 637 YEKERINMLRKEAENENQEI 656 (837)
Q Consensus 637 ~Ek~~l~kL~~~~e~~~q~i 656 (837)
++...|.+|.+++...++.+
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 45667777766665555443
No 61
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.29 E-value=1.8e+02 Score=25.51 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 623 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 670 (837)
Q Consensus 623 e~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL 670 (837)
.|++.+..++..+.-|.++++....+...|.+.=...+..+|.+.-+|
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L 54 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777666777777665544
No 62
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.85 E-value=1.9e+02 Score=25.90 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=31.3
Q ss_pred HHHHHhHHHHHHHH-HHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 612 EILSKLRREVEEQL-ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 663 (837)
Q Consensus 612 q~L~~Lr~EVde~~-q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~L 663 (837)
|.+..||.-|.||= ++|-.++ ..-.=|+-|.-|+..++.+..+|.+++.+|
T Consensus 26 qEi~~Lr~kv~elEnErlQyEk-KLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEW-KLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44556666665541 2222222 111223678888888999999999998876
No 63
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.79 E-value=3.8e+02 Score=23.99 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 003228 592 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN---ENQEIARLQYELEVERK 668 (837)
Q Consensus 592 ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~---~~q~i~~~k~~LE~Ekk 668 (837)
-|+.....|-+.++++|++...+-.-...--+++|...+. =...|..++.+++. +.|.+.+.|--|+.|..
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~------lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTD------KEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777788888877665544322222233332221 13345566666654 45789999999999977
Q ss_pred HHH
Q 003228 669 ALS 671 (837)
Q Consensus 669 AL~ 671 (837)
+-+
T Consensus 83 tYr 85 (95)
T 3mov_A 83 AYR 85 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 64
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.05 E-value=3.6e+02 Score=23.52 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=7.9
Q ss_pred HHHHHHHhhhhhHHHHH
Q 003228 594 EVDKIALMKERAAIESE 610 (837)
Q Consensus 594 e~e~~~llKerAa~e~e 610 (837)
+.....|+.++..+.-|
T Consensus 41 e~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 41 EEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555544444
No 65
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.98 E-value=2.8e+02 Score=27.50 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhcceehhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 609 SEMEILSKLRREVEEQLESLMSNKVEISYEKER-----INMLRKEAENENQEIARLQYELEVERKALSM 672 (837)
Q Consensus 609 ~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~-----l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m 672 (837)
..+++|.+|++.+.++++.+.-.-.+..+..+- |.+-..++....+.+.+.+..||.++..|.+
T Consensus 9 ~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~ 77 (174)
T 2p22_A 9 NHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNA 77 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999998887555554444322 2233333444444444444444444444433
No 66
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.96 E-value=4.5e+02 Score=24.56 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 003228 554 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 628 (837)
Q Consensus 554 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 628 (837)
+.|+..+|.++-..=..++-++--.++.+-..|..++ -.+..-|.++.+++..|..=|+.|-+.|.+|
T Consensus 29 r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq-------q~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 29 KQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ-------QGLSQAKRDVQEQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666766533334444444444444444444443 2344445556666666666666665555554
No 67
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=23.72 E-value=4.4e+02 Score=24.36 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHH
Q 003228 733 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISN-------LKKWASKASMRAAELKDAT 791 (837)
Q Consensus 733 ~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~-------l~~~~~~~~~~~~~~~~~~ 791 (837)
.+..++.|+.+.+.+..++... ...|..+...-..||.. |+.+..++.++...|...+
T Consensus 137 ~~~~v~~ll~~h~~~~~el~~~-~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~l~~~~ 201 (213)
T 1cun_A 137 TLAAIQGLLKKHEAFETDFTVH-KDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAA 201 (213)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888887654 46677777777777763 6777777777766666653
No 68
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=23.28 E-value=3.2e+02 Score=26.48 Aligned_cols=102 Identities=9% Similarity=0.120 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEE-EcCCccccccccc
Q 003228 641 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVV-VDKDLREESDAAV 719 (837)
Q Consensus 641 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~~~gikv~-vd~~~~~~~~~~~ 719 (837)
-++--..++-.-+.++.++...+..|+.++ ..|...+++..+++.+.|+.+-..|-...-.-- -..-..+-....+
T Consensus 17 ~~~~alr~ia~l~r~~~~i~~~~n~eI~~i---k~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~elf~k~Kt~~l~~G~v 93 (171)
T 2p2u_A 17 QAEGALAEIATIDRKVGEIEAQMNEAIDAA---KARASQKSAPLLARRKELEDGVATFATLNKTEMFKDRKSLDLGFGTI 93 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC---CCBCSSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCCeEEEeCCEEE
Confidence 355555666666667777777777776664 689999999999999999999999986542100 1222344455778
Q ss_pred hhhhcccccchHHHHHhHHHHHHHHHHh
Q 003228 720 MWVNAGKQFSVDQTVSRAQSLVDKLKAM 747 (837)
Q Consensus 720 ~w~~~~~~~~~~~~~~ra~~l~~k~~~m 747 (837)
.|+.......+.+. -.+.|++.||.+
T Consensus 94 ~~R~~~~~v~~~~~--~~~~vle~Lk~~ 119 (171)
T 2p2u_A 94 GFRLSTQIVQMSKI--TKDMTLERLRQF 119 (171)
T ss_dssp CCCCCCCCCCCTTC--CHHHHHHHHHHT
T ss_pred EEEeCCCccccccC--CHHHHHHHHHHC
Confidence 89987765543111 236777777775
No 69
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.20 E-value=4e+02 Score=23.73 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHH
Q 003228 580 EEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEI 656 (837)
Q Consensus 580 eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i 656 (837)
+..+..|......-..++..+.|+|++++.+...|-. .+++|-.+--.|..|...+..-+-+.+.+.+++
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~-------E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQA-------EAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666677778888888888887765543 333444444445555555555555555555554
No 70
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=23.07 E-value=2.6e+02 Score=24.42 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHHHHHhhh--hcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 003228 732 QTVSRAQSLVDKLKAMAN--DVSGKSKEIINTIIHKILLFISNLKKWAS 778 (837)
Q Consensus 732 ~~~~ra~~l~~k~~~m~~--~~~~~~~~~~~~~~~~i~~~i~~l~~~~~ 778 (837)
++-|.|++++-.++..-. +...+. -..-..+|...|..|++|+.
T Consensus 4 EarN~aE~~iy~~e~~L~~~e~~~kl---~~~ek~~i~~~i~~l~~~L~ 49 (113)
T 1ud0_A 4 RGSHMLESYAFNMKATVEDEKLQGKI---NDEDKQKILDKCNEIISWLD 49 (113)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTS---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhccC---CHHHHHHHHHHHHHHHHHHH
Confidence 445677777776665443 333221 12223445555566666663
No 71
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=22.92 E-value=5.9e+02 Score=25.56 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=26.3
Q ss_pred HhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhc
Q 003228 794 KAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRF 835 (837)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~~rf 835 (837)
+....+.+++.....+...++.+---++++.+..+..+.+.|
T Consensus 195 kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~e~~ 236 (243)
T 2a01_A 195 KATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEY 236 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344446666666666666666666667777776666555544
No 72
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.72 E-value=4.5e+02 Score=26.46 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=38.1
Q ss_pred HhcchhhhHHHHHHHHHHHHHhHHHHhhhHHHHHHH----------HHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Q 003228 518 AIGEASDAVNEELQRIEAESAAENAVSEHSALVAEV----------EKEINESFEKELSMEREKIDVVE-KMAEEARQ 584 (837)
Q Consensus 518 ~sG~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~----------~~di~~~f~~el~~Er~~~~~ve-k~~eea~~ 584 (837)
|.++......+++.+|.+|+..-... ...|.+++ +.|+-+-|--=|+.-+.||.+.+ +++.+|..
T Consensus 129 ~~~~~~~~~~~~~~~L~~e~~~l~~~--~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~ 204 (213)
T 1ik9_A 129 YALDTIAENQAKNEHLQKENERLLRD--WNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQE 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 36666666677777777665432222 22233333 44555666666777777788777 66555544
No 73
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=22.37 E-value=1e+03 Score=28.16 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=43.5
Q ss_pred HHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003228 622 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE 680 (837)
Q Consensus 622 de~~q~L~s~~~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R~W~EdE 680 (837)
+.|.+.+..-++.=.. +...+||+.+.....+++.+++..|..+.+=..+.+.|..+=
T Consensus 620 e~Qa~aIL~m~L~rLt-~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i 677 (692)
T 2xcs_B 620 EKQAQAILDMRLRRLT-GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEI 677 (692)
T ss_dssp HHHHHHHHTCBGGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3566666666654333 344678889999999999999999999998888888776643
No 74
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=21.85 E-value=2.5e+02 Score=28.33 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=23.5
Q ss_pred hhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhcc
Q 003228 795 AKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFK 836 (837)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~~rfk 836 (837)
+.+.+.+++..+......+.+.....+++.|..+.-+++.+|
T Consensus 174 l~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk 215 (243)
T 2a01_A 174 LAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLR 215 (243)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344555555555555555555555566666666555555554
No 75
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=21.17 E-value=1.7e+02 Score=28.66 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 003228 555 KEINESFEKELSM 567 (837)
Q Consensus 555 ~di~~~f~~el~~ 567 (837)
+++++.|++||..
T Consensus 22 ~el~~tWeeKl~~ 34 (184)
T 4egx_A 22 AELNETWEEKLRR 34 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHH
Confidence 4788899988764
No 76
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.95 E-value=5.5e+02 Score=24.47 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhHHH-HHHHHHHHHHH
Q 003228 572 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK-ERINMLRKEAE 650 (837)
Q Consensus 572 ~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~~~ei~~Ek-~~l~kL~~~~e 650 (837)
.+.+|.||+.|-++|+=..-.=+.|...-.-+-|+-+.=..+|.+|+ -|.+-|+.|-..=-.|+.|| +-+.+.+.-+.
T Consensus 7 vdkLe~mFqKA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~Ls-aIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~ 85 (123)
T 4aj5_K 7 VDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELS-VIKSRYQTLYARFKPVAVEQKESKSRICATVK 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777765544444433322222222222223333332 23333444443333566666 56666666666
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHhH
Q 003228 651 NENQEIARLQYEL--------EVERKALSMARAWA 677 (837)
Q Consensus 651 ~~~q~i~~~k~~L--------E~EkkAL~m~R~W~ 677 (837)
.-..-|-++|... |.|+.|...|++..
T Consensus 86 ~tm~miQ~LQ~~td~el~plteeE~~a~~~l~~~~ 120 (123)
T 4aj5_K 86 KTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHM 120 (123)
T ss_dssp HHHHHHHHHHHHHCCCCCCCHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhhC
Confidence 5555555555443 56666666666544
No 77
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.50 E-value=4e+02 Score=26.12 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=12.0
Q ss_pred HHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhc
Q 003228 801 ELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRF 835 (837)
Q Consensus 801 ~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~~rf 835 (837)
+++....-+...+..+...=+++.|..+.-+++.|
T Consensus 132 elr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eel 166 (191)
T 1nfn_A 132 ELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGA 166 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333333333333333333344333333333
No 78
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.13 E-value=3.9e+02 Score=23.98 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHh
Q 003228 652 ENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 699 (837)
Q Consensus 652 ~~q~i~~~k~~LE~EkkAL~m~R~W~EdEA~r~~e~A~vLEea~~rW~ 699 (837)
+.++..+-.|.-.-|++.|.-||.=.++|-..-++.-+-||++-.|++
T Consensus 24 KrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 24 KREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555544
Done!