Query 003229
Match_columns 837
No_of_seqs 152 out of 228
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 17:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 55.1 7.9 0.00058 33.7 5.6 24 729-752 4-27 (144)
2 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 35.8 1.2E+02 0.0087 25.5 10.6 94 730-828 14-115 (196)
3 d1gs9a_ a.24.1.1 (A:) Apolipop 34.4 21 0.0015 30.9 4.8 75 737-811 43-121 (144)
4 d1y74a1 a.194.1.1 (A:17-73) Li 30.6 35 0.0025 26.7 5.0 44 729-775 2-45 (57)
5 d2fupa1 a.47.5.1 (A:1-130) Hyp 24.0 1.6E+02 0.011 24.2 8.7 53 688-747 54-107 (130)
6 d1eq1a_ a.63.1.1 (A:) Apolipop 19.8 1.3E+02 0.0098 27.1 7.7 92 736-827 53-144 (166)
7 d1gqea_ e.38.1.1 (A:) Polypept 19.2 3.9E+02 0.028 26.3 11.9 30 597-626 50-79 (362)
8 d1i5na_ a.24.10.3 (A:) Chemota 16.6 81 0.0059 26.0 5.0 89 684-774 13-103 (128)
9 d1gesa1 c.3.1.5 (A:3-146,A:263 15.5 1.3E+02 0.0093 25.7 6.3 54 693-752 16-69 (217)
10 d2efla1 a.238.1.4 (A:1-288) Fo 13.8 3.8E+02 0.028 23.3 21.3 55 639-693 166-221 (288)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=55.08 E-value=7.9 Score=33.73 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=15.6
Q ss_pred chHHHHHhHHHHHHHHHHhhhhcc
Q 003229 729 SVDQTVSRAQSLVDKLKAMANDVS 752 (837)
Q Consensus 729 ~~~~~~~ra~~l~~k~~~m~~~~~ 752 (837)
.+++++++.-+-+++++.++.++-
T Consensus 4 ~~e~~~d~f~~y~~~l~~~a~~~~ 27 (144)
T d1gs9a_ 4 RWELALGRFWDYLRWVQTLSEQVQ 27 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356677777777777776666543
No 2
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.81 E-value=1.2e+02 Score=25.52 Aligned_cols=94 Identities=9% Similarity=0.141 Sum_probs=45.9
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHH
Q 003229 730 VDQTVSRAQSLVDKLKAMANDVS--------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQE 801 (837)
Q Consensus 730 ~~~~~~ra~~l~~k~~~m~~~~~--------~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (837)
+...|.+-...+++|..+..... .+.++-|+.+...|..++..++..+..+......-+.. ..-.......
T Consensus 14 I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~-~~~~~~l~~~ 92 (196)
T d1fioa_ 14 INRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNK-QAQAENSRQR 92 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHH-HHHHHHHHHH
Confidence 34445555666666766655432 23444556666666666666666555443332211111 1122333445
Q ss_pred HHHhHHHHhhhhcccchhhhhhhhhhH
Q 003229 802 LQQSTAEFRSNLTEGAKRVAGDCREGV 828 (837)
Q Consensus 802 ~~~~~~~~~~~~~~~~kr~~~~c~~gv 828 (837)
++..+..|...- ......||..+
T Consensus 93 l~~~~~~f~~~q----~~~~~~~k~~~ 115 (196)
T d1fioa_ 93 FLKLIQDYRIVD----SNYKEENKEQA 115 (196)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 555555555444 44445555543
No 3
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=34.37 E-value=21 Score=30.93 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhh
Q 003229 737 AQSLVDKLKAMANDVSG----KSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRS 811 (837)
Q Consensus 737 a~~l~~k~~~m~~~~~~----~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (837)
...+++.+......+++ -+.++-.++.+.+..|=..|...+.+++.+....-+-...++...+.+++..+.....
T Consensus 43 l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~e 121 (144)
T d1gs9a_ 43 MDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLR 121 (144)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555553333333 3333333333333333333333344444433333333233333344444444444333
No 4
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.63 E-value=35 Score=26.75 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=30.4
Q ss_pred chHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 003229 729 SVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 775 (837)
Q Consensus 729 ~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~ 775 (837)
.++.-|+||-.|++||+. .+.+..--...|.+|.| ..|...+|+
T Consensus 2 ~L~rDv~RaieLle~LQ~-~gevp~~KL~aLqkVLq--SdF~~avRE 45 (57)
T d1y74a1 2 GLERDVSRAVELLERLQR-SGELPPQKLQALQRVLQ--SRFCSAIRE 45 (57)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHH--SHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHH--HHHHHHHHH
Confidence 467789999999999987 56666555666666655 345555554
No 5
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.03 E-value=1.6e+02 Score=24.25 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=24.5
Q ss_pred HHHHHHHhHHHhhcCcEEEEcCCccccccccchhhhccc-ccchHHHHHhHHHHHHHHHHh
Q 003229 688 AKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGK-QFSVDQTVSRAQSLVDKLKAM 747 (837)
Q Consensus 688 A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~-~~~~~~~~~ra~~l~~k~~~m 747 (837)
...++.+|++|-+. -++..+...-..|..... ...+....++-..++.++|.+
T Consensus 54 l~~~~~~R~~~l~~-------~g~~~~~~~~~~l~~~~~~~~~l~~~~~~L~~l~~~~k~~ 107 (130)
T d2fupa1 54 LERNGRARAEILRE-------AGVSLDREGLARYARERADGAELLARGDELGELLERCQQA 107 (130)
T ss_dssp HHHHHHHHHHHHHH-------TTCCSSHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------cCCCCCcchHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777644 233333333333443322 122444444455555555543
No 6
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
Probab=19.83 E-value=1.3e+02 Score=27.14 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcc
Q 003229 736 RAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTE 815 (837)
Q Consensus 736 ra~~l~~k~~~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (837)
....++.-|..-..+-.+++.+.+...=+.|-.+-.-||+..-.+.+.+.++...+-..+...+++++....+.+..+.+
T Consensus 53 ~~~~~~~~l~~~~~Ea~~~a~dav~qa~~nle~~Aeelrk~~e~ikq~a~d~~~~~~~~~~~~vqe~~~~ake~~~~l~E 132 (166)
T d1eq1a_ 53 QLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEE 132 (166)
T ss_dssp HHHHHHHHHHHHHTTCSSTHHHHHHHHHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555677888999988888888888888888888888877777777777777788888888899999988
Q ss_pred cchhhhhhhhhh
Q 003229 816 GAKRVAGDCREG 827 (837)
Q Consensus 816 ~~kr~~~~c~~g 827 (837)
.-++++..-|+-
T Consensus 133 ~n~kl~~~~K~~ 144 (166)
T d1eq1a_ 133 TNKKLAPKIKQA 144 (166)
T ss_dssp SCGGGHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777655543
No 7
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=19.17 E-value=3.9e+02 Score=26.29 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 003229 597 KIALMKERAAIESEMEILSKLRREVEEQLE 626 (837)
Q Consensus 597 ~~~llKerAa~e~e~q~L~~Lr~EVde~~q 626 (837)
...++||++.++...+.+..|+..+++.-+
T Consensus 50 Aqkl~KE~s~L~~iVe~~~~l~~~leDl~e 79 (362)
T d1gqea_ 50 AQALGKERSSLEAVVDTLDQMKQGLEDVSG 79 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999988877644
No 8
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=16.64 E-value=81 Score=25.96 Aligned_cols=89 Identities=9% Similarity=-0.003 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhHHHhhcCcEE-EEcCCcccccc-ccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHH
Q 003229 684 AREQAKALEGARDRWERQGIKV-VVDKDLREESD-AAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINT 761 (837)
Q Consensus 684 ~~e~A~vLEea~~rW~~~gikv-~vd~~~~~~~~-~~~~w~~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~~~~~~~~~~ 761 (837)
+.++-..|+..-.+|++.+-.. .++.=+|.=-+ -|. ...-+-..+....++.++++++++.-...+.....+++.+
T Consensus 13 a~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~--a~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~~~~~~l~~ 90 (128)
T d1i5na_ 13 ADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGG--AGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLE 90 (128)
T ss_dssp HHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhH--HhhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 4577788888888898764210 00000000000 111 1112345667777888999999887666666666777777
Q ss_pred HHHHHHHHHHHHH
Q 003229 762 IIHKILLFISNLK 774 (837)
Q Consensus 762 ~~~~i~~~i~~l~ 774 (837)
.+..|+.++..++
T Consensus 91 ~~d~l~~~l~~~~ 103 (128)
T d1i5na_ 91 TKDIMQEQLDAYK 103 (128)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666554
No 9
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}
Probab=15.47 E-value=1.3e+02 Score=25.70 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=37.8
Q ss_pred HHhHHHhhcCcEEEEcCCccccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcc
Q 003229 693 GARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS 752 (837)
Q Consensus 693 ea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~k~~~m~~~~~ 752 (837)
.|..++.+.|.||+|=. ....|.||.|.|- -..+++..+-.+.+.++..+.+..
T Consensus 16 ~aA~~a~~~G~kV~iiE----~~~~GGtc~~~gc--~p~k~l~~~a~~~~~~~~~~~~~g 69 (217)
T d1gesa1 16 ASINRAAMYGQKCALIE----AKELGGTCVNVGC--VPKKVMWHAAQIREAIHMYGPDYG 69 (217)
T ss_dssp HHHHHHHTTTCCEEEEE----SSCTTHHHHHHSH--HHHHHHHHHHHHHHHHHTTGGGGT
T ss_pred HHHHHHHHCCCEEEEEe----ccCcCCeEecccc--cccccchhhHHHHHHHHhhhhhcC
Confidence 35567889999988632 2347889998874 455677777778888877665543
No 10
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.78 E-value=3.8e+02 Score=23.30 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 003229 639 KERINMLRKEAENENQEIARLQYELEVERKALSMAR-AWAEDEAKRAREQAKALEG 693 (837)
Q Consensus 639 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R-~W~EdEA~r~~e~A~vLEe 693 (837)
+..++|+....+...+.+.+++.++..-..++..+| .|-+.+....-..-.-||+
T Consensus 166 ~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~ 221 (288)
T d2efla1 166 KADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEE 221 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888777777777777766666665553 4544444444444444444
Done!