Query 003230
Match_columns 837
No_of_seqs 446 out of 3406
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 19:32:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 5E-149 1E-153 1306.8 69.0 733 64-835 2-738 (758)
2 PLN03244 alpha-amylase; Provis 100.0 1E-121 2E-126 1051.9 56.3 624 158-830 85-869 (872)
3 KOG0470 1,4-alpha-glucan branc 100.0 2E-119 5E-124 1018.4 47.0 689 129-829 39-754 (757)
4 PLN02960 alpha-amylase 100.0 3E-117 7E-122 1035.1 60.5 655 158-830 82-894 (897)
5 PRK12568 glycogen branching en 100.0 2E-102 5E-107 911.6 54.3 582 185-828 116-729 (730)
6 PRK14706 glycogen branching en 100.0 3E-101 7E-106 905.4 56.4 576 188-829 19-623 (639)
7 PRK14705 glycogen branching en 100.0 7E-101 2E-105 937.0 54.5 582 182-828 609-1223(1224)
8 PRK05402 glycogen branching en 100.0 1.1E-93 2.3E-98 860.6 60.3 609 147-829 84-725 (726)
9 PRK12313 glycogen branching en 100.0 7.8E-94 1.7E-98 852.4 58.1 582 188-830 19-630 (633)
10 TIGR01515 branching_enzym alph 100.0 3.2E-93 6.9E-98 842.1 54.9 578 188-826 9-613 (613)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 4.6E-92 1E-96 807.5 42.6 580 187-826 17-627 (628)
12 TIGR02104 pulA_typeI pullulana 100.0 1.4E-74 3E-79 683.8 44.8 511 195-785 11-601 (605)
13 TIGR02402 trehalose_TreZ malto 100.0 2.8E-71 6.2E-76 645.5 43.9 479 205-759 1-536 (542)
14 TIGR02100 glgX_debranch glycog 100.0 3.6E-70 7.7E-75 648.2 52.2 554 194-826 5-687 (688)
15 TIGR02102 pullulan_Gpos pullul 100.0 1.7E-69 3.7E-74 658.3 52.9 584 174-828 307-1005(1111)
16 PRK03705 glycogen debranching 100.0 5.5E-69 1.2E-73 633.6 49.1 548 193-827 9-657 (658)
17 TIGR02103 pullul_strch alpha-1 100.0 9.1E-66 2E-70 615.4 45.8 554 174-827 113-896 (898)
18 PLN02877 alpha-amylase/limit d 100.0 1.2E-63 2.7E-68 594.8 47.6 486 195-759 214-915 (970)
19 PRK14510 putative bifunctional 100.0 1.5E-61 3.4E-66 602.7 43.7 478 193-731 13-576 (1221)
20 PRK10785 maltodextrin glucosid 100.0 4.9E-57 1.1E-61 532.7 42.3 462 201-758 17-559 (598)
21 TIGR02456 treS_nterm trehalose 100.0 1.1E-56 2.4E-61 525.4 36.9 450 314-827 3-538 (539)
22 PRK10933 trehalose-6-phosphate 100.0 3.6E-55 7.7E-60 511.4 39.1 452 312-827 6-550 (551)
23 COG1523 PulA Type II secretory 100.0 1.1E-54 2.5E-59 506.8 39.4 551 193-828 17-692 (697)
24 TIGR02403 trehalose_treC alpha 100.0 6.6E-55 1.4E-59 509.7 37.3 456 314-826 2-542 (543)
25 PRK09505 malS alpha-amylase; R 100.0 4.4E-51 9.5E-56 481.5 34.6 368 311-757 184-681 (683)
26 PRK09441 cytoplasmic alpha-amy 100.0 1E-49 2.2E-54 461.0 33.8 376 334-826 19-479 (479)
27 PF00128 Alpha-amylase: Alpha 100.0 5.9E-45 1.3E-49 395.9 17.0 277 334-667 1-313 (316)
28 PLN00196 alpha-amylase; Provis 100.0 1.5E-42 3.2E-47 391.9 30.2 316 333-758 40-402 (428)
29 PLN02361 alpha-amylase 100.0 3E-40 6.4E-45 369.1 33.1 315 335-756 27-376 (401)
30 PRK13840 sucrose phosphorylase 100.0 1.5E-38 3.3E-43 361.0 27.9 375 333-758 16-467 (495)
31 TIGR03852 sucrose_gtfA sucrose 100.0 4.1E-39 9E-44 363.5 23.0 373 331-759 14-462 (470)
32 TIGR02455 TreS_stutzeri trehal 100.0 9.3E-37 2E-41 346.7 35.5 463 316-830 51-684 (688)
33 COG0366 AmyA Glycosidases [Car 100.0 8.2E-38 1.8E-42 364.0 27.8 401 317-759 1-485 (505)
34 PLN02784 alpha-amylase 100.0 2.1E-36 4.5E-41 354.0 29.1 328 317-755 499-865 (894)
35 KOG0471 Alpha-amylase [Carbohy 100.0 9.8E-34 2.1E-38 329.9 28.3 167 314-483 15-219 (545)
36 TIGR02401 trehalose_TreY malto 100.0 7E-31 1.5E-35 311.0 31.3 174 334-535 13-286 (825)
37 PRK14511 maltooligosyl trehalo 99.9 2.5E-25 5.4E-30 265.0 29.1 82 334-416 17-98 (879)
38 KOG2212 Alpha-amylase [Carbohy 99.9 2.7E-22 5.8E-27 210.1 22.5 381 335-784 38-465 (504)
39 smart00642 Aamy Alpha-amylase 99.9 4.9E-22 1.1E-26 198.2 10.2 93 321-414 1-97 (166)
40 cd02854 Glycogen_branching_enz 99.8 3.1E-20 6.6E-25 169.0 10.3 96 201-296 3-99 (99)
41 PF14872 GHL5: Hypothetical gl 99.8 3.1E-17 6.8E-22 184.3 23.7 306 194-538 26-438 (811)
42 PRK14507 putative bifunctional 99.7 1.9E-16 4.1E-21 199.8 9.9 91 317-414 744-834 (1693)
43 TIGR01531 glyc_debranch glycog 99.6 6.7E-14 1.5E-18 171.9 29.4 82 333-416 128-214 (1464)
44 COG3280 TreY Maltooligosyl tre 99.5 5.4E-14 1.2E-18 161.1 13.7 80 335-415 17-96 (889)
45 PF02922 CBM_48: Carbohydrate- 99.5 2.1E-14 4.6E-19 127.1 6.5 79 195-279 1-85 (85)
46 cd02860 Pullulanase_N_term Pul 99.5 1.6E-13 3.5E-18 125.5 9.0 92 196-299 1-97 (100)
47 cd02855 Glycogen_branching_enz 99.4 9E-13 2E-17 121.5 10.3 92 189-287 3-100 (106)
48 cd02856 Glycogen_debranching_e 99.3 4.6E-12 1E-16 116.6 8.9 81 195-283 1-91 (103)
49 PF02806 Alpha-amylase_C: Alph 99.3 3.5E-12 7.7E-17 115.4 7.4 89 733-828 1-94 (95)
50 cd02853 MTHase_N_term Maltooli 99.2 4.2E-11 9.1E-16 106.3 10.2 84 197-298 1-85 (85)
51 cd02852 Isoamylase_N_term Isoa 99.1 4.3E-10 9.3E-15 106.3 9.4 79 197-283 1-95 (119)
52 PRK05402 glycogen branching en 99.0 3E-10 6.4E-15 138.3 7.0 82 188-280 13-96 (726)
53 cd02858 Esterase_N_term Estera 98.9 4.6E-09 1E-13 93.2 7.7 65 203-280 6-71 (85)
54 cd02861 E_set_proteins_like E 98.8 1.2E-08 2.7E-13 89.9 7.4 55 204-267 3-57 (82)
55 PF02638 DUF187: Glycosyl hydr 98.6 6.4E-07 1.4E-11 98.6 13.3 189 335-530 17-226 (311)
56 cd02688 E_set E or "early" set 98.5 4.8E-07 1E-11 78.8 8.6 61 203-270 4-64 (83)
57 PF14701 hDGE_amylase: glucano 98.5 2.9E-07 6.4E-12 103.3 7.9 83 333-417 18-107 (423)
58 PF11941 DUF3459: Domain of un 98.4 1.7E-06 3.7E-11 77.1 9.2 83 713-825 1-89 (89)
59 KOG3625 Alpha amylase [Carbohy 98.3 4.7E-05 1E-09 89.9 21.4 81 334-416 139-226 (1521)
60 PF14871 GHL6: Hypothetical gl 98.3 3.6E-06 7.8E-11 80.9 9.8 125 342-478 4-132 (132)
61 PRK14508 4-alpha-glucanotransf 98.3 4.3E-05 9.3E-10 89.1 19.5 238 387-666 198-456 (497)
62 PF02446 Glyco_hydro_77: 4-alp 98.0 2.1E-05 4.5E-10 92.2 9.9 193 332-538 13-339 (496)
63 COG1649 Uncharacterized protei 97.9 0.00011 2.3E-09 82.8 13.2 178 336-529 63-268 (418)
64 PLN02950 4-alpha-glucanotransf 97.9 0.00086 1.9E-08 83.4 22.3 192 149-363 102-308 (909)
65 cd02859 AMPKbeta_GBD_like AMP- 97.9 3.1E-05 6.6E-10 67.8 6.8 53 205-267 4-56 (79)
66 PF02324 Glyco_hydro_70: Glyco 97.9 2.6E-05 5.7E-10 90.3 7.7 98 315-414 563-674 (809)
67 PLN02635 disproportionating en 97.8 0.00019 4E-09 84.1 13.4 138 387-538 224-376 (538)
68 PRK14510 putative bifunctional 97.7 0.0025 5.4E-08 82.0 22.6 140 387-539 932-1082(1221)
69 PF02065 Melibiase: Melibiase; 97.5 0.0025 5.5E-08 72.3 16.0 134 337-482 58-195 (394)
70 cd06594 GH31_glucosidase_YihQ 97.3 0.00098 2.1E-08 73.8 9.9 136 335-479 21-165 (317)
71 cd06593 GH31_xylosidase_YicI Y 97.3 0.0036 7.8E-08 69.0 14.3 174 335-532 22-206 (308)
72 cd06597 GH31_transferase_CtsY 97.3 0.0017 3.7E-08 72.6 11.8 139 335-480 22-187 (340)
73 cd06592 GH31_glucosidase_KIAA1 97.2 0.0017 3.7E-08 71.5 10.8 128 335-480 28-165 (303)
74 PF02324 Glyco_hydro_70: Glyco 96.8 0.031 6.7E-07 65.7 15.8 128 445-602 144-298 (809)
75 TIGR00217 malQ 4-alpha-glucano 96.7 0.036 7.7E-07 65.3 16.3 139 387-538 212-365 (513)
76 cd06600 GH31_MGAM-like This fa 96.7 0.0056 1.2E-07 67.9 8.8 132 335-480 22-160 (317)
77 PRK11052 malQ 4-alpha-glucanot 96.7 0.035 7.5E-07 67.5 16.1 139 387-538 355-504 (695)
78 PF00150 Cellulase: Cellulase 96.6 0.041 8.9E-07 59.0 14.4 137 339-533 22-172 (281)
79 PF13200 DUF4015: Putative gly 96.5 0.029 6.2E-07 61.8 12.5 175 340-534 15-195 (316)
80 cd06591 GH31_xylosidase_XylS X 96.4 0.015 3.3E-07 64.5 10.2 130 335-480 22-159 (319)
81 cd06602 GH31_MGAM_SI_GAA This 96.4 0.019 4.1E-07 64.3 10.6 133 337-480 24-165 (339)
82 PRK14582 pgaB outer membrane N 96.2 0.046 1E-06 65.9 13.4 132 335-479 332-467 (671)
83 COG1640 MalQ 4-alpha-glucanotr 96.1 0.044 9.5E-07 63.8 11.9 87 387-482 210-308 (520)
84 PF13199 Glyco_hydro_66: Glyco 96.1 0.06 1.3E-06 63.6 13.1 126 342-481 122-269 (559)
85 cd06599 GH31_glycosidase_Aec37 95.9 0.012 2.7E-07 65.1 6.1 128 338-479 30-167 (317)
86 cd06604 GH31_glucosidase_II_Ma 95.8 0.033 7.2E-07 62.3 9.0 129 335-480 22-159 (339)
87 PRK10426 alpha-glucosidase; Pr 95.7 0.12 2.6E-06 62.6 13.8 135 337-482 221-365 (635)
88 PF01055 Glyco_hydro_31: Glyco 95.5 0.023 5E-07 65.8 6.8 131 336-480 42-180 (441)
89 smart00632 Aamy_C Aamy_C domai 95.4 0.077 1.7E-06 46.6 7.9 71 739-826 6-78 (81)
90 PRK14507 putative bifunctional 95.1 0.25 5.4E-06 65.1 14.3 139 387-538 386-535 (1693)
91 TIGR01370 cysRS possible cyste 94.9 0.11 2.4E-06 57.2 9.4 83 437-531 127-211 (315)
92 cd06595 GH31_xylosidase_XylS-l 94.5 0.16 3.5E-06 55.7 9.4 128 335-478 23-157 (292)
93 PRK10658 putative alpha-glucos 94.3 0.057 1.2E-06 65.6 5.7 126 338-480 284-418 (665)
94 PF11852 DUF3372: Domain of un 94.3 0.07 1.5E-06 53.2 5.3 52 708-759 41-115 (168)
95 cd06598 GH31_transferase_CtsZ 94.1 0.09 1.9E-06 58.3 6.2 129 336-479 23-163 (317)
96 cd06601 GH31_lyase_GLase GLase 93.4 0.5 1.1E-05 52.8 10.6 107 336-479 23-132 (332)
97 cd06542 GH18_EndoS-like Endo-b 92.7 0.42 9E-06 51.1 8.6 64 385-478 49-112 (255)
98 cd02875 GH18_chitobiase Chitob 92.7 0.58 1.3E-05 52.8 10.1 84 390-526 67-151 (358)
99 PF07745 Glyco_hydro_53: Glyco 92.4 0.96 2.1E-05 50.4 11.1 146 342-531 28-174 (332)
100 COG1501 Alpha-glucosidases, fa 92.4 0.19 4.1E-06 62.0 6.0 86 391-482 325-417 (772)
101 cd06562 GH20_HexA_HexB-like Be 92.2 3.7 8.1E-05 46.2 15.6 177 336-536 17-214 (348)
102 cd06603 GH31_GANC_GANAB_alpha 91.4 0.3 6.4E-06 54.7 5.7 129 335-479 22-161 (339)
103 cd06564 GH20_DspB_LnbB-like Gl 90.9 3.4 7.3E-05 46.1 13.5 164 336-534 16-203 (326)
104 cd06545 GH18_3CO4_chitinase Th 90.2 2.7 5.8E-05 45.0 11.5 87 386-523 45-131 (253)
105 cd02742 GH20_hexosaminidase Be 90.1 2.9 6.3E-05 46.1 11.9 167 335-534 14-194 (303)
106 KOG1065 Maltase glucoamylase a 90.0 1.6 3.4E-05 53.3 10.2 131 334-479 308-447 (805)
107 PF14488 DUF4434: Domain of un 89.8 0.87 1.9E-05 45.7 6.8 65 342-410 24-88 (166)
108 PLN02763 hydrolase, hydrolyzin 89.7 0.71 1.5E-05 58.0 7.4 128 336-480 200-336 (978)
109 cd06568 GH20_SpHex_like A subg 89.4 6 0.00013 44.2 13.8 167 335-533 16-197 (329)
110 PF01120 Alpha_L_fucos: Alpha- 88.5 2.4 5.2E-05 47.7 10.0 149 341-531 94-243 (346)
111 cd06589 GH31 The enzymes of gl 88.3 1.7 3.7E-05 46.9 8.3 93 334-480 21-116 (265)
112 PF14883 GHL13: Hypothetical g 88.0 12 0.00027 40.6 14.2 167 341-529 20-189 (294)
113 smart00812 Alpha_L_fucos Alpha 87.9 7.1 0.00015 44.6 13.3 115 342-479 85-202 (384)
114 cd05808 CBM20_alpha_amylase Al 87.8 1.4 3E-05 39.5 6.2 58 205-268 3-66 (95)
115 PF02449 Glyco_hydro_42: Beta- 87.3 1.7 3.8E-05 49.2 8.0 115 341-477 13-135 (374)
116 PRK12568 glycogen branching en 85.7 1.8 3.9E-05 53.1 7.3 78 189-279 23-102 (730)
117 COG3280 TreY Maltooligosyl tre 85.1 0.65 1.4E-05 55.6 3.1 45 713-758 775-827 (889)
118 cd06547 GH85_ENGase Endo-beta- 84.0 2.3 5E-05 47.6 6.7 95 391-530 50-145 (339)
119 cd06565 GH20_GcnA-like Glycosy 83.7 19 0.0004 39.8 13.6 167 335-534 15-188 (301)
120 cd06563 GH20_chitobiase-like T 82.3 26 0.00057 39.5 14.5 131 385-534 84-228 (357)
121 PF10438 Cyc-maltodext_C: Cycl 81.6 2.9 6.4E-05 36.5 5.0 21 739-759 7-31 (78)
122 PF00686 CBM_20: Starch bindin 81.2 2.3 5E-05 38.3 4.5 60 205-270 4-73 (96)
123 cd05816 CBM20_DPE2_repeat2 Dis 81.0 6.2 0.00013 35.9 7.3 60 205-269 2-68 (99)
124 cd02871 GH18_chitinase_D-like 80.8 6.2 0.00013 43.7 8.6 61 385-478 58-118 (312)
125 PF08533 Glyco_hydro_42C: Beta 80.1 5 0.00011 32.7 5.7 46 749-826 12-57 (58)
126 cd06569 GH20_Sm-chitobiase-lik 79.9 9.5 0.00021 44.5 10.0 83 385-468 95-192 (445)
127 PLN03236 4-alpha-glucanotransf 79.8 2.4 5.1E-05 52.0 5.2 90 387-482 274-372 (745)
128 COG3867 Arabinogalactan endo-1 79.7 7.2 0.00016 42.3 8.0 152 338-530 63-219 (403)
129 cd05814 CBM20_Prei4 Prei4, N-t 79.4 3.7 8E-05 38.8 5.4 56 205-266 3-67 (120)
130 COG3589 Uncharacterized conser 78.8 2.4 5.1E-05 46.7 4.3 53 342-410 20-72 (360)
131 cd02874 GH18_CFLE_spore_hydrol 78.7 14 0.00031 40.7 10.6 89 389-523 47-136 (313)
132 PF13204 DUF4038: Protein of u 78.2 4.3 9.3E-05 44.5 6.2 66 342-411 34-110 (289)
133 cd06570 GH20_chitobiase-like_1 77.1 16 0.00035 40.5 10.4 120 337-469 18-146 (311)
134 PLN02316 synthase/transferase 76.6 25 0.00054 45.1 12.9 47 315-363 586-633 (1036)
135 PRK14705 glycogen branching en 76.5 5.6 0.00012 51.6 7.3 81 189-279 516-598 (1224)
136 TIGR03849 arch_ComA phosphosul 73.5 7.1 0.00015 41.4 6.0 47 341-407 74-120 (237)
137 COG1523 PulA Type II secretory 73.4 7 0.00015 47.8 6.8 83 204-286 68-155 (697)
138 cd06543 GH18_PF-ChiA-like PF-C 72.4 72 0.0016 35.1 13.8 93 345-478 19-112 (294)
139 PF01301 Glyco_hydro_35: Glyco 71.2 4.3 9.2E-05 45.2 4.0 56 342-409 28-85 (319)
140 cd05809 CBM20_beta_amylase Bet 70.9 13 0.00028 33.8 6.4 61 204-270 4-73 (99)
141 COG2342 Predicted extracellula 70.0 79 0.0017 34.3 12.7 157 341-531 33-191 (300)
142 cd02857 CD_pullulan_degrading_ 69.9 12 0.00027 34.4 6.3 65 193-268 10-82 (116)
143 cd05817 CBM20_DSP Dual-specifi 69.4 15 0.00032 33.5 6.5 57 205-267 2-64 (100)
144 PF10566 Glyco_hydro_97: Glyco 69.1 47 0.001 36.2 11.2 65 334-408 29-94 (273)
145 PLN03236 4-alpha-glucanotransf 67.5 10 0.00022 46.7 6.4 59 331-390 77-139 (745)
146 PF14701 hDGE_amylase: glucano 65.2 12 0.00026 43.1 6.0 40 441-482 359-404 (423)
147 PF03198 Glyco_hydro_72: Gluca 64.8 10 0.00022 41.8 5.1 48 342-412 57-104 (314)
148 cd05467 CBM20 The family 20 ca 64.2 22 0.00047 31.7 6.5 60 205-269 2-69 (96)
149 PLN03059 beta-galactosidase; P 63.7 9.4 0.0002 47.4 5.1 56 342-407 63-118 (840)
150 PF00728 Glyco_hydro_20: Glyco 63.5 8.3 0.00018 43.0 4.4 125 335-470 16-156 (351)
151 cd00598 GH18_chitinase-like Th 63.3 91 0.002 31.7 11.8 64 385-478 47-112 (210)
152 COG2730 BglC Endoglucanase [Ca 63.1 12 0.00026 43.1 5.7 59 340-408 75-137 (407)
153 PF05913 DUF871: Bacterial pro 60.3 14 0.00031 41.7 5.5 58 335-410 12-70 (357)
154 PRK11052 malQ 4-alpha-glucanot 60.1 17 0.00036 44.8 6.4 64 330-394 158-224 (695)
155 PF03644 Glyco_hydro_85: Glyco 57.7 19 0.00041 40.0 5.8 94 391-530 46-140 (311)
156 TIGR03356 BGL beta-galactosida 55.1 31 0.00067 40.1 7.2 102 332-470 49-150 (427)
157 PF09260 DUF1966: Domain of un 54.1 30 0.00064 31.2 5.4 69 740-828 5-82 (91)
158 PTZ00445 p36-lilke protein; Pr 53.3 29 0.00063 36.3 5.9 65 335-405 26-96 (219)
159 PF13380 CoA_binding_2: CoA bi 52.5 18 0.00039 33.9 4.0 39 341-405 69-107 (116)
160 cd05813 CBM20_genethonin_1 Gen 52.1 53 0.0011 29.4 6.8 56 205-267 3-64 (95)
161 PF00724 Oxidored_FMN: NADH:fl 51.5 63 0.0014 36.3 8.8 24 386-409 79-102 (341)
162 PF02679 ComA: (2R)-phospho-3- 50.8 28 0.00062 37.1 5.5 48 341-408 87-134 (244)
163 cd02931 ER_like_FMN Enoate red 50.7 2.6E+02 0.0057 31.9 13.8 25 386-412 82-106 (382)
164 smart00636 Glyco_18 Glycosyl h 49.1 46 0.001 36.8 7.3 56 450-523 87-142 (334)
165 cd06546 GH18_CTS3_chitinase GH 49.0 78 0.0017 34.0 8.7 65 384-478 56-120 (256)
166 cd02872 GH18_chitolectin_chito 48.8 42 0.0009 37.8 6.9 63 450-528 92-155 (362)
167 COG1306 Uncharacterized conser 47.4 1.3E+02 0.0028 33.0 9.7 132 337-481 76-220 (400)
168 PRK10605 N-ethylmaleimide redu 47.4 2.3E+02 0.005 32.2 12.5 28 386-415 78-105 (362)
169 cd06548 GH18_chitinase The GH1 47.2 48 0.001 36.8 7.0 29 450-478 105-133 (322)
170 PF03423 CBM_25: Carbohydrate 45.2 46 0.00099 29.6 5.2 34 213-246 17-55 (87)
171 PF00704 Glyco_hydro_18: Glyco 44.9 57 0.0012 35.9 7.2 64 451-531 96-164 (343)
172 cd04733 OYE_like_2_FMN Old yel 44.6 2.4E+02 0.0053 31.5 12.1 28 386-415 81-108 (338)
173 KOG0496 Beta-galactosidase [Ca 44.5 33 0.00072 41.2 5.3 60 341-410 52-111 (649)
174 cd02932 OYE_YqiM_FMN Old yello 43.0 3.8E+02 0.0081 29.9 13.3 68 341-415 33-103 (336)
175 cd05811 CBM20_glucoamylase Glu 43.0 73 0.0016 29.0 6.4 60 205-270 9-78 (106)
176 cd02929 TMADH_HD_FMN Trimethyl 42.7 3.9E+02 0.0084 30.4 13.5 28 386-415 82-109 (370)
177 PRK13210 putative L-xylulose 5 42.1 42 0.00092 36.0 5.5 51 342-405 20-70 (284)
178 cd04735 OYE_like_4_FMN Old yel 42.0 3.2E+02 0.0069 30.8 12.6 129 386-524 77-208 (353)
179 cd06549 GH18_trifunctional GH1 41.6 60 0.0013 35.6 6.6 54 449-523 83-137 (298)
180 cd02876 GH18_SI-CLP Stabilin-1 41.1 50 0.0011 36.5 5.9 59 450-524 88-147 (318)
181 PRK10076 pyruvate formate lyas 40.7 71 0.0015 33.4 6.6 62 338-405 146-211 (213)
182 PRK09852 cryptic 6-phospho-bet 40.4 1.8E+02 0.004 34.3 10.6 104 332-470 66-169 (474)
183 cd02879 GH18_plant_chitinase_c 40.3 84 0.0018 34.5 7.5 53 450-522 88-141 (299)
184 cd04734 OYE_like_3_FMN Old yel 40.1 3.3E+02 0.0071 30.6 12.3 28 386-415 76-103 (343)
185 TIGR01210 conserved hypothetic 38.9 44 0.00096 37.0 5.0 60 341-410 117-178 (313)
186 cd02803 OYE_like_FMN_family Ol 38.6 1.5E+02 0.0033 32.6 9.4 86 386-480 76-164 (327)
187 cd04747 OYE_like_5_FMN Old yel 38.2 3.4E+02 0.0074 30.8 12.0 132 386-527 77-212 (361)
188 PF01212 Beta_elim_lyase: Beta 36.9 31 0.00066 37.9 3.3 23 385-407 143-165 (290)
189 PRK13523 NADPH dehydrogenase N 36.4 3.9E+02 0.0085 30.0 12.1 158 347-524 46-206 (337)
190 PRK01060 endonuclease IV; Prov 35.9 76 0.0016 34.1 6.2 50 339-403 14-63 (281)
191 PRK05628 coproporphyrinogen II 35.6 45 0.00098 37.8 4.6 65 340-414 107-172 (375)
192 KOG0256 1-aminocyclopropane-1- 35.5 44 0.00095 38.1 4.2 54 342-412 215-271 (471)
193 PRK08207 coproporphyrinogen II 35.3 65 0.0014 38.1 5.9 62 340-411 268-330 (488)
194 TIGR00539 hemN_rel putative ox 34.8 65 0.0014 36.3 5.7 64 341-414 100-164 (360)
195 TIGR00433 bioB biotin syntheta 33.9 81 0.0018 34.2 6.1 60 341-411 123-182 (296)
196 COG1902 NemA NADH:flavin oxido 33.6 4E+02 0.0087 30.3 11.6 26 386-413 82-107 (363)
197 PRK08208 coproporphyrinogen II 33.3 50 0.0011 38.3 4.5 66 340-415 140-206 (430)
198 cd05815 CBM20_DPE2_repeat1 Dis 33.0 1.3E+02 0.0029 27.1 6.4 58 205-268 2-68 (101)
199 cd02930 DCR_FMN 2,4-dienoyl-Co 33.0 4.2E+02 0.009 29.8 11.7 29 385-415 75-103 (353)
200 cd05820 CBM20_novamyl Novamyl 32.9 1.8E+02 0.0038 26.6 7.2 61 204-270 4-75 (103)
201 cd02877 GH18_hevamine_XipI_cla 32.8 6.8E+02 0.015 27.3 13.4 59 345-406 18-78 (280)
202 PRK15447 putative protease; Pr 32.8 88 0.0019 34.5 6.1 52 334-405 15-66 (301)
203 PRK05904 coproporphyrinogen II 32.2 54 0.0012 37.0 4.4 62 341-412 103-165 (353)
204 PRK09856 fructoselysine 3-epim 31.7 90 0.002 33.3 5.9 48 342-404 17-64 (275)
205 PRK07094 biotin synthase; Prov 31.4 64 0.0014 35.7 4.8 61 341-411 129-189 (323)
206 KOG0259 Tyrosine aminotransfer 30.7 55 0.0012 37.0 4.0 31 385-415 217-247 (447)
207 PRK05692 hydroxymethylglutaryl 30.6 4.3E+02 0.0094 28.9 11.0 58 387-479 120-178 (287)
208 PF09154 DUF1939: Domain of un 30.3 1.9E+02 0.0041 23.8 6.1 56 751-826 1-57 (57)
209 PF07071 DUF1341: Protein of u 29.7 1.1E+02 0.0023 31.8 5.5 43 341-403 138-180 (218)
210 PF02903 Alpha-amylase_N: Alph 28.8 92 0.002 29.1 4.7 61 200-267 18-89 (120)
211 PRK09249 coproporphyrinogen II 28.3 84 0.0018 36.7 5.3 65 340-414 150-215 (453)
212 PRK06256 biotin synthase; Vali 28.3 70 0.0015 35.6 4.5 61 340-411 151-211 (336)
213 PRK08446 coproporphyrinogen II 27.9 95 0.0021 34.9 5.5 63 341-413 98-161 (350)
214 COG0520 csdA Selenocysteine ly 27.6 53 0.0011 37.9 3.4 37 373-409 165-201 (405)
215 PLN02808 alpha-galactosidase 27.6 57 0.0012 37.3 3.6 94 347-480 63-156 (386)
216 PRK15452 putative protease; Pr 27.6 1.2E+02 0.0026 35.4 6.3 50 343-405 15-64 (443)
217 PRK08599 coproporphyrinogen II 27.3 83 0.0018 35.7 4.9 64 341-414 100-164 (377)
218 PLN02692 alpha-galactosidase 27.2 58 0.0013 37.5 3.6 94 346-479 86-179 (412)
219 TIGR00542 hxl6Piso_put hexulos 27.2 1E+02 0.0022 33.2 5.4 50 342-404 20-69 (279)
220 cd02933 OYE_like_FMN Old yello 27.2 9.2E+02 0.02 27.0 13.6 28 386-415 76-103 (338)
221 PLN03231 putative alpha-galact 26.9 9.8E+02 0.021 27.2 14.6 141 337-479 21-185 (357)
222 PRK13347 coproporphyrinogen II 26.8 85 0.0018 36.7 5.0 63 341-413 152-215 (453)
223 PRK12928 lipoyl synthase; Prov 26.8 1.6E+02 0.0034 32.4 6.7 61 335-406 217-277 (290)
224 PRK05799 coproporphyrinogen II 26.7 91 0.002 35.3 5.1 65 340-414 98-163 (374)
225 PRK05660 HemN family oxidoredu 26.2 98 0.0021 35.2 5.2 65 341-415 107-172 (378)
226 PRK14581 hmsF outer membrane N 26.0 6.2E+02 0.013 31.3 12.1 126 342-478 338-466 (672)
227 PF01261 AP_endonuc_2: Xylose 26.0 45 0.00098 33.5 2.3 45 344-405 1-45 (213)
228 PRK08255 salicylyl-CoA 5-hydro 25.2 7.3E+02 0.016 31.1 13.1 29 386-416 474-503 (765)
229 COG0041 PurE Phosphoribosylcar 25.2 75 0.0016 31.4 3.4 52 335-408 14-65 (162)
230 PRK05967 cystathionine beta-ly 25.0 85 0.0018 36.1 4.4 32 379-410 158-189 (395)
231 PRK05939 hypothetical protein; 24.9 84 0.0018 36.0 4.4 30 380-409 141-170 (397)
232 TIGR00538 hemN oxygen-independ 24.7 96 0.0021 36.2 4.9 64 341-414 151-215 (455)
233 PLN02411 12-oxophytodienoate r 24.6 1.1E+03 0.024 27.0 13.8 28 386-415 86-113 (391)
234 PRK15014 6-phospho-beta-glucos 24.4 4.2E+02 0.009 31.3 10.1 104 332-470 64-167 (477)
235 PRK07379 coproporphyrinogen II 24.3 75 0.0016 36.5 3.8 65 341-415 115-180 (400)
236 PF15640 Tox-MPTase4: Metallop 24.3 69 0.0015 30.5 2.8 26 381-406 16-41 (132)
237 PRK09997 hydroxypyruvate isome 24.2 2E+02 0.0044 30.4 7.0 29 383-411 155-183 (258)
238 PRK09331 Sep-tRNA:Cys-tRNA syn 23.7 71 0.0015 36.2 3.5 30 381-410 169-198 (387)
239 PRK09028 cystathionine beta-ly 23.7 92 0.002 35.7 4.4 28 383-410 159-186 (394)
240 cd00609 AAT_like Aspartate ami 23.5 89 0.0019 33.9 4.1 54 343-412 124-177 (350)
241 cd00287 ribokinase_pfkB_like r 23.2 1.4E+02 0.0029 29.7 5.1 52 343-409 42-93 (196)
242 cd05818 CBM20_water_dikinase P 23.2 3.1E+02 0.0068 24.4 6.9 58 205-270 4-66 (92)
243 PLN02229 alpha-galactosidase 22.6 85 0.0018 36.4 3.7 54 345-405 92-146 (427)
244 TIGR01211 ELP3 histone acetylt 22.4 96 0.0021 37.0 4.3 61 340-410 205-265 (522)
245 PRK09058 coproporphyrinogen II 22.3 96 0.0021 36.2 4.2 64 341-414 163-227 (449)
246 TIGR01324 cysta_beta_ly_B cyst 21.9 1.1E+02 0.0023 35.0 4.4 30 381-410 146-175 (377)
247 cd06452 SepCysS Sep-tRNA:Cys-t 21.7 69 0.0015 35.8 2.9 30 381-410 150-179 (361)
248 cd00615 Orn_deC_like Ornithine 21.5 62 0.0013 35.2 2.3 27 383-409 166-192 (294)
249 cd05014 SIS_Kpsf KpsF-like pro 21.4 2.1E+02 0.0045 26.5 5.7 63 342-405 17-79 (128)
250 KOG2499 Beta-N-acetylhexosamin 21.4 4E+02 0.0086 31.4 8.6 30 385-414 248-278 (542)
251 PRK07324 transaminase; Validat 21.4 1.4E+02 0.003 33.7 5.2 28 385-412 171-198 (373)
252 PRK09593 arb 6-phospho-beta-gl 21.3 6.7E+02 0.015 29.6 11.0 104 332-470 68-171 (478)
253 PRK14457 ribosomal RNA large s 21.1 2.5E+02 0.0055 31.6 7.1 50 342-405 275-324 (345)
254 PLN02389 biotin synthase 20.7 2.1E+02 0.0045 32.8 6.4 60 341-411 178-237 (379)
255 PRK07050 cystathionine beta-ly 20.7 1.1E+02 0.0025 34.9 4.4 29 383-411 163-191 (394)
256 cd05810 CBM20_alpha_MTH Glucan 20.3 2.1E+02 0.0046 25.8 5.2 48 215-268 16-67 (97)
257 cd06454 KBL_like KBL_like; thi 20.2 83 0.0018 34.6 3.1 26 384-409 146-171 (349)
258 TIGR02539 SepCysS Sep-tRNA:Cys 20.1 88 0.0019 35.2 3.3 31 381-411 157-187 (370)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=5.3e-149 Score=1306.81 Aligned_cols=733 Identities=74% Similarity=1.278 Sum_probs=678.5
Q ss_pred cCccEeeCCCCCCCCCCccccccCCCccccccccccccchhhcccccccccccCCcccccCcccccchhhhhccCCCCCC
Q 003230 64 ASEKVLVPGSQSDDPSAVTDQLETPETVSEDIEVRNGIESLQMEDNENVEIEDHGPVTLQGKVSSEKSEVKREVGPRSIP 143 (837)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (837)
.+..++.|++++++.++++.+...+.......+..+.....+.+ .......++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 54 (758)
T PLN02447 2 LSEHVLSPDGLPDSAPSPSPAVDEPRPEDPGSPATEAPYPAKTE---------------------------DNSAAASPP 54 (758)
T ss_pred CccccccCCCcCCCCCCCCCCCCcCCCCCcccccccCCcccccc---------------------------cccccccCC
Confidence 46778999999999988877777766333333333222222221 011222688
Q ss_pred CCCCCCcceecCCCCcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEeCCcEEEEEeCCCcCeEEEEeec
Q 003230 144 PPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDF 223 (837)
Q Consensus 144 ~~~~~~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~gv~FrvWAP~A~~V~LvgDF 223 (837)
+|.++.+|+++||||+||+++|++|+.+|.+++++|.+.+|||++|+++|++||+|+.++||+||||||+|++|+|+|||
T Consensus 55 ~~~~~~~~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdF 134 (758)
T PLN02447 55 PPGDGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAALIGDF 134 (758)
T ss_pred CCCCcceeeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC-ccccCCccceecccCCCCC--CCCcEEeCCCc
Q 003230 224 NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQAPGEI--PYNGIYYDPPE 300 (837)
Q Consensus 224 N~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~ 300 (837)
|+|++..++|++.++|+|+++||+ .+|.++++||++|||+|.+.+| ..+++|||++++++.|++. .+++++|||++
T Consensus 135 N~W~~~~~~M~~~~~GvWe~~ip~-~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~ 213 (758)
T PLN02447 135 NNWNPNAHWMTKNEFGVWEIFLPD-ADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPE 213 (758)
T ss_pred CCCCCCccCceeCCCCEEEEEECC-ccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCC
Confidence 999998999999999999999999 8899999999999999998866 4689999999999988753 68999999976
Q ss_pred cccccccCCCCCCCCCceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC
Q 003230 301 EEKYVFQHPQPKKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS 380 (837)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~IYE~hv~~f~~~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~ 380 (837)
.++|.|+++++..+.+++|||+|||+|+.++++|||+++++++|||||+|||||||||||++++++++|||++++||+|+
T Consensus 214 ~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~ 293 (758)
T PLN02447 214 EEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS 293 (758)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc
Confidence 66799998887778899999999999998888999999998899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 003230 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLS 460 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~ 460 (837)
++|||++|||+||++||++||+||||+|+||++.++..+++.|+|+.+.||+.+..++++.|++.+|||++++||+||++
T Consensus 294 ~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~ 373 (758)
T PLN02447 294 SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLS 373 (758)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998877889999988889998888888999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcc
Q 003230 461 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF 540 (837)
Q Consensus 461 ~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~ 540 (837)
+++||++||||||||||+|++|+|.|||+..+|+++|+++||+++|.+++.||+++|+.|++.+|++++|||+++++|.+
T Consensus 374 ~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l 453 (758)
T PLN02447 374 NLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTL 453 (758)
T ss_pred HHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCcccchhhhhhHHHHHHHHHhh-cchhhhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHH
Q 003230 541 CIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 619 (837)
Q Consensus 541 ~~~~~~gglgfD~~~~~~~~d~~~~~lk~-~~~~~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~ 619 (837)
|+|+..||+||||+|+|+|+++|+++|+. .++.|.++.+.++++++++.+++|.|++||||+++|++++++|+|+++||
T Consensus 454 ~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my 533 (758)
T PLN02447 454 CRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMY 533 (758)
T ss_pred cccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhh
Confidence 99999999999999999999999999996 68899999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCccccC
Q 003230 620 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 699 (837)
Q Consensus 620 ~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w 699 (837)
+.|+++.+.++.++|+++++||+++++|++||.++|||||+|||+++|+|||++ +|++++.++|++|++
T Consensus 534 ~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~-----------~n~ws~~~~~~~W~L 602 (758)
T PLN02447 534 DGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPRE-----------GNGWSYDKCRRRWDL 602 (758)
T ss_pred hcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCccc-----------ccccCcccccCCccc
Confidence 999999999999999999999999999999999899999999999999999994 999999999988888
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEEECCCCCcccceEEcccCCccEEEE
Q 003230 700 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIV 779 (837)
Q Consensus 700 ~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~v 779 (837)
.+.+.++++.|++|+|+|++|++++++|..+++|+.+.+++++||||+|..+||||||+|++++.+|+|++|.+|+|+++
T Consensus 603 ~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~ll~V~NF~p~~s~~~Y~igvp~~G~y~~i 682 (758)
T PLN02447 603 ADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYRVGCDKPGKYKIV 682 (758)
T ss_pred cCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCCeEEEEeCCCCCCCCCcEECCCCCCeEEEE
Confidence 76666689999999999999999999999999999999999999999999999999999878899999999999999999
Q ss_pred EeCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEcCCccCCC
Q 003230 780 LDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALADEEEQPL 835 (837)
Q Consensus 780 lnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~~~~~~~~ 835 (837)
||||+..|||+++++....+.+.+.+|+++++++.|+|||++++||+++++.+++.
T Consensus 683 lnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~~~~~~ 738 (758)
T PLN02447 683 LDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDEDDEPA 738 (758)
T ss_pred ECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEECCcccccc
Confidence 99999999999998866678888888999999999999999999999987655543
No 2
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.1e-121 Score=1051.93 Aligned_cols=624 Identities=40% Similarity=0.797 Sum_probs=580.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEeCC-cEEEEEeCCCcCeEEEEeecCCCCCCccc----
Q 003230 158 LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGDFNNWNPNADI---- 232 (837)
Q Consensus 158 l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~-gv~FrvWAP~A~~V~LvgDFN~w~~~~~~---- 232 (837)
-+.|++.|+.|++..++++.+|.+.+++|+.|++||+.||+|++++ +++|++|||+|...+|+||||+|+++++.
T Consensus 85 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~ 164 (872)
T PLN03244 85 DKIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREG 164 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccc
Confidence 5789999999999999999999999999999999999999999986 79999999999999999999999998775
Q ss_pred -cccCCCceEEEEeCCCC--------------------------------------------------------------
Q 003230 233 -MTQNEFGVWEIFLPNNA-------------------------------------------------------------- 249 (837)
Q Consensus 233 -m~~~~~GvW~~~ip~~~-------------------------------------------------------------- 249 (837)
|.+++.|+|+|.|+..+
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (872)
T PLN03244 165 HFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRFIKNRFEVAAKLYEQ 244 (872)
T ss_pred cccccccceEEEEechhhhcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhHHHhHHHHHHHHHHH
Confidence 66999999999995431
Q ss_pred ---------------------------------------------C--C-------------------------------
Q 003230 250 ---------------------------------------------D--G------------------------------- 251 (837)
Q Consensus 250 ---------------------------------------------~--g------------------------------- 251 (837)
+ |
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (872)
T PLN03244 245 IFGPNGPETEEELEDIPDAETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREKFRAKEPPIAYWLES 324 (872)
T ss_pred hhCCCCccchhhhccCcchHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHHhhccCCChhhHHHh
Confidence 0 1
Q ss_pred -----------CCCCCCCCEEEEEEeCCCCccccCCccceecccCCCCCCCCcEEeCCCccccccccCCCCCCCCCceEE
Q 003230 252 -----------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIY 320 (837)
Q Consensus 252 -----------~~~~~~g~~yk~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~IY 320 (837)
.++|+||++||+.+.+++|..+|+|+|+++++|++....|++++|+|+..++|.|++++|++|..++||
T Consensus 325 ~~~~~~w~~~~~~~i~H~s~~k~~~~~~~g~~~RiPaw~~~~~~~~~~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIY 404 (872)
T PLN03244 325 RKGRKAWLKKYIPAIPHGSKYRLYFNTPDGPLERIPAWATYVLPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIY 404 (872)
T ss_pred hcccCceeecccCCCCCCCeEEEEEEcCCCCcccCCCCeeeEEecCCCCceeeeEeCCCcccCCccCCCCCCCCCCceEE
Confidence 225899999999999988878999999999999988888999999999878899999999999999999
Q ss_pred EeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcC
Q 003230 321 EAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 400 (837)
Q Consensus 321 E~hv~~f~~~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~G 400 (837)
|+|||++++++++|||++|+++ +++||+|+++|||++|||+||++||++|
T Consensus 405 E~HvGms~~e~kv~ty~eF~~~------------------------------vt~fFApssRYGTPeDLK~LVD~aH~~G 454 (872)
T PLN03244 405 ECHVGISGSEPKISSFEEFTEK------------------------------VTNFFAASSRYGTPDDFKRLVDEAHGLG 454 (872)
T ss_pred EEEeeecCCCCCcccHHHHhhc------------------------------cCcccccCcccCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999962 7899999999999999999999999999
Q ss_pred CEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 401 LLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 401 I~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
|+||||||+||++.+...+++.|+|+...||+.+.++.+..||+..||+++++|++||+++++||++||||||||||+|+
T Consensus 455 I~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVt 534 (872)
T PLN03244 455 LLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLA 534 (872)
T ss_pred CEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecch
Confidence 99999999999999887889999998878999888888999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceeccccCCcccchhhhhhHH
Q 003230 481 SMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIA 560 (837)
Q Consensus 481 ~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~ 560 (837)
+|+|.|||+ ..|+++|..+++...|.+++.||+++|+.+++.+|++++|||+++++|.+|+|...||+||||+|+|+|+
T Consensus 535 SMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwm 613 (872)
T PLN03244 535 SMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAP 613 (872)
T ss_pred hheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcch
Confidence 999999999 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-cchhhhhhhhHHhh-ccCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHH
Q 003230 561 DKWIELLKK-RDEDWKMGAIVHTM-TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIAL 638 (837)
Q Consensus 561 d~~~~~lk~-~~~~~~~~~l~~~l-~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al 638 (837)
++|+++|+. .+..|.++.+.+++ +++++.+++++|.||||++.+|++++++|+++++||..|. .++.+++++++
T Consensus 614 dd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~----~~~vv~Rg~aL 689 (872)
T PLN03244 614 DMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLG----GKELLDRGCSL 689 (872)
T ss_pred HHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhcccccccccc----cchhhhhhhHH
Confidence 999999995 46669999999988 7788888999999999999999999999999999998873 46678899999
Q ss_pred HHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHH
Q 003230 639 HKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQ 718 (837)
Q Consensus 639 ~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li 718 (837)
+||++++++++||.|+|||||+|||+++|.++|+ .||++++..||++|++.+. ..++.|++|+|+|+
T Consensus 690 hKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr-----------~gN~~s~~~arrdW~Lld~--~~hk~L~~FdrdLn 756 (872)
T PLN03244 690 HKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPM-----------PSNNFSFSLANRCWDLLEN--EVHHHLFSFDKDLM 756 (872)
T ss_pred HHHHHHHHHHccCccceeecccccCCchheeccc-----------cCCCccccccccCccccCC--hhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 4999999999888777654 35899999999999
Q ss_pred HHHHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcc
Q 003230 719 HLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAE 798 (837)
Q Consensus 719 ~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~ 798 (837)
+|++++++|..+++|+.+.+++++||||+|..+||||||+|++++.+|+|++|.+|+|+++||||+..|||+++++...
T Consensus 757 ~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~~~FGG~g~~~~~~- 835 (872)
T PLN03244 757 DLDENEGILSRGLPNIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDETKYGGQGIIEEDH- 835 (872)
T ss_pred HHHhcCcccccCCcEEeeecCCCCEEEEEecCEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCChhhhCCCCccCCCc-
Confidence 9999999999999999999999999999999999999999977899999999999999999999999999999987654
Q ss_pred eec--cccccCCCCeEEEEEEcCceEEEEEEcCC
Q 003230 799 YFS--LEGWYDDQPHSFLVYAPSRTAVVYALADE 830 (837)
Q Consensus 799 ~~~--~~~~~~~~~~~l~l~Lp~~s~~Vl~~~~~ 830 (837)
+.+ .+.+++++++++.|+|||+|++||++.++
T Consensus 836 ~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~~ 869 (872)
T PLN03244 836 YLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSRI 869 (872)
T ss_pred eeecccccccCCCCceEEEEeCCCEEEEEEEeeE
Confidence 554 45578999999999999999999998764
No 3
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-119 Score=1018.37 Aligned_cols=689 Identities=57% Similarity=0.975 Sum_probs=651.0
Q ss_pred cchhhhhccCCCCCCCCCCCCcceecCCCCcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEeCCc-EEE
Q 003230 129 EKSEVKREVGPRSIPPPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITY 207 (837)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~g-v~F 207 (837)
.+...+.+.+.+.+| +....+++++||||.+|..++++|+.++.+.++.|.+.+++|..|+++|+.||+|.++++ +.|
T Consensus 39 ~~~~~~~e~~~~~~p-~~~ve~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~ 117 (757)
T KOG0470|consen 39 YDLRSALEAKSGDLP-ADVVEKFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDF 117 (757)
T ss_pred hhhHHHhhhhcCCCC-hHHhhcccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceee
Confidence 334455667777777 899999999999999999999999999999999999999999999999999999999988 999
Q ss_pred EEeCCCcCeEEEEeecCCCCCCccccc-cCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC-ccccCCccceecccC
Q 003230 208 REWAPGAKSASLIGDFNNWNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQA 285 (837)
Q Consensus 208 rvWAP~A~~V~LvgDFN~w~~~~~~m~-~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~-~~~~~~~~~~~~~~~ 285 (837)
++|||.|++|+++||||+|+.....+. +++.|+|++.+|...+|...++|++.+++.+.+++| .+.++|||++++.+.
T Consensus 118 ~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~ 197 (757)
T KOG0470|consen 118 TEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQE 197 (757)
T ss_pred eeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCC
Confidence 999999999999999999999888877 889999999999998999999999999999999998 579999999999998
Q ss_pred CCCCCCCcEEeCCCccccccccCCCCCCCC-CceEEEeecCCCCC-CCCCCC---HHhhHhhhhhHHHHcCCCEEEEcCc
Q 003230 286 PGEIPYNGIYYDPPEEEKYVFQHPQPKKPK-SLRIYEAHVGMSST-EPIINT---YANFRDDVLPRIKRLGYNAVQIMAV 360 (837)
Q Consensus 286 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~IYE~hv~~f~~-~~~~Gt---~~~~~~~~LdyLk~LGvt~I~LmPi 360 (837)
+...+|.+++|+|++...|.|++++|+.|+ +++|||+|||.||. ++++-+ |++|+++.||+||+||+||||||||
T Consensus 198 ~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi 277 (757)
T KOG0470|consen 198 GEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPI 277 (757)
T ss_pred CcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeeh
Confidence 888889999999987788888888888887 99999999977654 445444 9999975599999999999999999
Q ss_pred ccC-CCCCCCCCccccccCCCCCCCCHH------HHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCC-CCccc
Q 003230 361 QEH-SYYASFGYHVTNFFAPSSRCGTPD------DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTD-GHYFH 432 (837)
Q Consensus 361 ~e~-~~~~s~GY~v~~y~a~~~~~Gt~e------dfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~-~~yf~ 432 (837)
+|| .++.+|||+|++||+|.+||||++ |||.||++||.+||-||||||+||++++..++++.|||++ .+||+
T Consensus 278 ~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~ 357 (757)
T KOG0470|consen 278 FEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFH 357 (757)
T ss_pred hhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCcCCceEEE
Confidence 999 688999999999999999999999 9999999999999999999999999998889999999999 77999
Q ss_pred cCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcc---cChhH
Q 003230 433 SGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA---TDVDA 509 (837)
Q Consensus 433 ~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~---~d~~~ 509 (837)
.+++++|+.|+++.|||++|+|+++|+++++||++||+|||||||.+++|+|.|||...+|+++|.+|+|.. .+.++
T Consensus 358 ~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~ 437 (757)
T KOG0470|consen 358 SGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDA 437 (757)
T ss_pred eCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887 88999
Q ss_pred HHHHHHHHHHhhccCCCeEEEEecCCCCCcc-eeccccCCcccc--hhhhhhHHHHHHHHHhh-cchhhhhhhhHHhhcc
Q 003230 510 VVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF-CIPVQDGGVGFD--YRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTN 585 (837)
Q Consensus 510 ~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~-~~~~~~gglgfD--~~~~~~~~d~~~~~lk~-~~~~~~~~~l~~~l~~ 585 (837)
+.+++.+++.++...|+.|.+||+.+++|.+ |.|..+|+.||| |+.+|...++|++.|+. .+++|.++.+...+++
T Consensus 438 l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN 517 (757)
T KOG0470|consen 438 LVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTN 517 (757)
T ss_pred HHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeec
Confidence 9999999999999999999999999999999 999999999999 99999999999999998 8999999999999999
Q ss_pred CcccccceecccCcccccccc-cchhh-hccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccC
Q 003230 586 RRWLEKCVAYAESHDQALVGD-KTIAF-WLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 663 (837)
Q Consensus 586 ~~~~~~~v~ylenHD~~r~g~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G 663 (837)
+++++++++|+++||++.+|+ +|+++ |+|++.||..|+..++.++.++|++++|||++++++++.|..+|+|||+|||
T Consensus 518 ~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfG 597 (757)
T KOG0470|consen 518 RRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFG 597 (757)
T ss_pred cccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccC
Confidence 999999999999999999999 99999 9999999999999999999999999999999999999887778999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCcccCc-cccCCccccccc-hHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCC
Q 003230 664 HPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRR-RFDLGDADYLRY-RGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGD 741 (837)
Q Consensus 664 ~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~-~~~w~~~~~~~~-~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~ 741 (837)
|++|.|+|+ .+|++++.++|+ +++..+.+..++ +.+.+|.+.|+.|.+.+.+++.+.+++...++.+
T Consensus 598 h~e~~d~~~-----------~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~ 666 (757)
T KOG0470|consen 598 HPEWLDFPR-----------YGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEAD 666 (757)
T ss_pred CccccCCCc-----------ccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhh
Confidence 999999998 599999999999 999999888888 8899999999999999999999999999999999
Q ss_pred cEEEEEcCcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCce
Q 003230 742 RVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRT 821 (837)
Q Consensus 742 ~Vlaf~R~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s 821 (837)
.+++|+|+.+++||||+++.++.+|.|++..+|.|+.||++|...+||+.++......++....+++++.++.||+|+++
T Consensus 667 ~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~~l~VY~~~~~ 746 (757)
T KOG0470|consen 667 EVIVFERGPLLFVFNFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPVSLQVYIPSRT 746 (757)
T ss_pred heeeeccCCeEEEEEecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccCCeeeeEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999888888888889999999999999999
Q ss_pred EEEEEEcC
Q 003230 822 AVVYALAD 829 (837)
Q Consensus 822 ~~Vl~~~~ 829 (837)
++|+....
T Consensus 747 a~vl~~~~ 754 (757)
T KOG0470|consen 747 ATVLALLD 754 (757)
T ss_pred ceEeeecc
Confidence 99998754
No 4
>PLN02960 alpha-amylase
Probab=100.00 E-value=3.2e-117 Score=1035.10 Aligned_cols=655 Identities=43% Similarity=0.801 Sum_probs=578.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEeCC-cEEEEEeCCCcCeEEEEeecCCCCCCccccc--
Q 003230 158 LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGDFNNWNPNADIMT-- 234 (837)
Q Consensus 158 l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~-gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~-- 234 (837)
-+.|+++|++||+.+++++.+|++++++|..|+++|+.||+|++.+ |+.|+||||+|+.++|+||||+|+++++.|.
T Consensus 82 ~~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g 161 (897)
T PLN02960 82 DRAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAREG 161 (897)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhhcc
Confidence 5789999999999999999999999999999999999999999876 8999999999999999999999999998766
Q ss_pred ---cCCCceEEEEeCCCC--------------------------------------------------------------
Q 003230 235 ---QNEFGVWEIFLPNNA-------------------------------------------------------------- 249 (837)
Q Consensus 235 ---~~~~GvW~~~ip~~~-------------------------------------------------------------- 249 (837)
+++.|+|+|.||..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (897)
T PLN02960 162 YFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFIKNRLEVPAKLYEQ 241 (897)
T ss_pred cccccccceEEEEechhhhcCCCcchhhhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhhhccchhHHHHHHH
Confidence 889999999995431
Q ss_pred ---------------------------------------------CC---------------------------------
Q 003230 250 ---------------------------------------------DG--------------------------------- 251 (837)
Q Consensus 250 ---------------------------------------------~g--------------------------------- 251 (837)
+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 321 (897)
T PLN02960 242 MFGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLEKKPPLPYWEETRK 321 (897)
T ss_pred hhCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhccCCCCcceeeeee
Confidence 00
Q ss_pred ---------CCCCCCCCEEEEEEeCCCCccccCCccceecccCCCCCCCCcEEeCCCccccccccCCCCCCCCCceEEEe
Q 003230 252 ---------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEA 322 (837)
Q Consensus 252 ---------~~~~~~g~~yk~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~IYE~ 322 (837)
.+.+.||++|+|+|++.++..+++|||++++...+....+..++|+|+....|.|++.+|..+.+++|||+
T Consensus 322 ~~~gw~~~~ip~~~hG~~Yky~v~~~~g~~~~vdpyA~~~qp~~~~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYEl 401 (897)
T PLN02960 322 GRKAWLKKYIPAIPHGSKYRVYFNTPDGPLERVPAWATYVLPDPDGKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYEC 401 (897)
T ss_pred cCCcEEEEEccCCCCCCEEEEEEEeCCCceEECCCcceeEeecCCCccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEE
Confidence 11368999999999988777788999999876655444456788898644679998877767789999999
Q ss_pred ecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE
Q 003230 323 HVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL 402 (837)
Q Consensus 323 hv~~f~~~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~ 402 (837)
|||+|+.++++|||++++++.|||||+|||||||||||++++.+.+|||++++||+|+++|||++|||+||++||++||+
T Consensus 402 Hvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~ 481 (897)
T PLN02960 402 HVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLL 481 (897)
T ss_pred ecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 99999988889999999977799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccc
Q 003230 403 VLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 403 VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
||||+|+||++.++..++..|+|+...||+.+..+++..|+++.|||++++||+||+++++||++||||||||||+|++|
T Consensus 482 VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sM 561 (897)
T PLN02960 482 VFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSM 561 (897)
T ss_pred EEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeeccccee
Confidence 99999999999987678889999877788887778888999999999999999999999999999999999999999999
Q ss_pred cccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceeccccCCcccchhhhhhHHHH
Q 003230 483 MYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADK 562 (837)
Q Consensus 483 ~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~ 562 (837)
+|.|+|. ..|.|.|.++++...|.+++.||+++|+.+++..|++++|||+.+++|.+|+|...||+||||+++|+++++
T Consensus 562 lY~d~g~-~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d 640 (897)
T PLN02960 562 LYTHNGF-ASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEM 640 (897)
T ss_pred eeeccCc-cccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHH
Confidence 9999887 467777777777678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-cchhhhhhhhHHhhc-cCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHH
Q 003230 563 WIELLKK-RDEDWKMGAIVHTMT-NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHK 640 (837)
Q Consensus 563 ~~~~lk~-~~~~~~~~~l~~~l~-~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~k 640 (837)
++++|+. ..+.|.+..+...+. ++...+++|+|+|||||+.+|++++...+.+.+++.+++.. +.+.|++++++
T Consensus 641 ~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~----~~~lRa~al~~ 716 (897)
T PLN02960 641 WLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVK----ELLLRGVSLHK 716 (897)
T ss_pred HHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccC----hhhhhhhhHHH
Confidence 9999986 346677777777777 66677889999999999999999999888888777666542 34567888999
Q ss_pred HHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHH
Q 003230 641 MIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHL 720 (837)
Q Consensus 641 la~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~L 720 (837)
++++++++++|.++|+|||+|||+++|.++|+ ++++.++..++ ++|...+...++.|++|+|+|++|
T Consensus 717 ~~rllt~~~~Pg~pLlFMG~EFGh~e~~~~Pd-----------P~n~~tf~~s~--LdW~Ll~~~~h~~l~~f~rdL~~L 783 (897)
T PLN02960 717 MIRLITFTLGGSAYLNFMGNEFGHPERVEFPR-----------ASNNFSFSLAN--RRWDLLEDGVHAHLFSFDKALMAL 783 (897)
T ss_pred HHHHHHHHhCCCCCEeeCccccCChhhhhCcC-----------CCCcccccccc--CCcccccChhHHHHHHHHHHHHHH
Confidence 98877666554346889999999988778877 46767766655 666666666789999999999999
Q ss_pred HHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcce-
Q 003230 721 EEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEY- 799 (837)
Q Consensus 721 R~~~~~L~~g~~~i~~~~~~~~Vlaf~R~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~~- 799 (837)
|+++|+|..++.|+.+.+.+++||||.|+.++||+||+|..++.+|+|++|.+|.|+++||||+..|||.++++.....
T Consensus 784 r~~~paL~~g~~~i~~~d~~~~Viaf~R~~llvV~NFsp~~~~~~Y~vgvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~ 863 (897)
T PLN02960 784 DEKYLILSRGLPNIHHVNDTSMVISFTRGPLLFAFNFHPTNSYEEYEVGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQ 863 (897)
T ss_pred HhcChhhcCCcceeeeecCCCCEEEEEeCCeEEEEeCCCCCcCcCceECCCCCCcEEEEEeCchhhcCCCCccCCCccee
Confidence 9999999999999988888899999999999999999986678899999999999999999999999999988654333
Q ss_pred eccccccCCCCeEEEEEEcCceEEEEEEcCC
Q 003230 800 FSLEGWYDDQPHSFLVYAPSRTAVVYALADE 830 (837)
Q Consensus 800 ~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~~~ 830 (837)
.+...+++++++++.|+|||++++||++.++
T Consensus 864 ~t~~~~~~g~~~si~i~LPp~sa~v~k~~~~ 894 (897)
T PLN02960 864 RTKSKRIDGLRNCLELTLPSRSAQVYKLARI 894 (897)
T ss_pred eccccccCCCCceEEEEeCCCEEEEEEEeee
Confidence 3566789999999999999999999998654
No 5
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.5e-102 Score=911.59 Aligned_cols=582 Identities=25% Similarity=0.472 Sum_probs=495.0
Q ss_pred chhhhhcccccCCcEEe----CCcEEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCE
Q 003230 185 GLAAFSRGYEKFGFIRS----DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSR 260 (837)
Q Consensus 185 ~l~~f~~~y~~lG~~~~----~~gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~ 260 (837)
+.+.+.+.|+.||||.. .+||+|+||||+|++|+|+||||+|+...++|.+.++|+|+++||+.. +|..
T Consensus 116 ~~g~~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~-------~G~~ 188 (730)
T PRK12568 116 AAGDGQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVE-------AGAR 188 (730)
T ss_pred hCCchhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCC-------CCCE
Confidence 33477889999999974 568999999999999999999999999889999889999999999754 4679
Q ss_pred EEEEEeCCCCc-cccCCccceecccCCCCCCCCcEEeCCCccccccccCCC------C-CCCCCceEEEeecCCCCCC--
Q 003230 261 VKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ------P-KKPKSLRIYEAHVGMSSTE-- 330 (837)
Q Consensus 261 yk~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~-~~~~~~~IYE~hv~~f~~~-- 330 (837)
|||+|.+.+|. ....|||++.....+.+ .+++.++. .|.|++.. + ...++++|||+|||+|+..
T Consensus 189 YKYeI~~~~G~~~~k~DPYA~~~e~~p~~---asvV~~~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~ 262 (730)
T PRK12568 189 YKYAITAADGRVLLKADPVARQTELPPAT---ASVVPSAA---AFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGH 262 (730)
T ss_pred EEEEEEcCCCeEeecCCCcceEeecCCCC---CeEEcCCC---CCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCC
Confidence 99999987675 36789999998776654 57887653 46665431 1 2357899999999999864
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 331 ~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
...++|++++++.|||||+|||||||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+|
T Consensus 263 ~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 263 NQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 34679999997678999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCc
Q 003230 411 HASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGL 489 (837)
Q Consensus 411 H~s~~~~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~ 489 (837)
|++.+. .++..|+|+. .|.+.++ .+.+..|++..|||++|+||+||+++++||++||||||||+|++++|+|.+++.
T Consensus 343 H~~~d~-~~l~~fdg~~-~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r 420 (730)
T PRK12568 343 HFPDDA-HGLAQFDGAA-LYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGR 420 (730)
T ss_pred cCCccc-cccccCCCcc-ccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccc
Confidence 999875 5778899864 4555443 366788998889999999999999999999999999999999999999998877
Q ss_pred cccccCCc-ccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHh
Q 003230 490 QVAFTGNY-SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLK 568 (837)
Q Consensus 490 ~~~f~~~~-~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk 568 (837)
..+ .| .+.+|+.+|.++++||+++|+.+++.+|++++|||+++.+|.++.+...||+|||++|+|+||++++++++
T Consensus 421 ~~g---~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~ 497 (730)
T PRK12568 421 AEG---EWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQ 497 (730)
T ss_pred ccc---cccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHh
Confidence 542 23 23467888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc--chhhhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHH
Q 003230 569 KR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVT 646 (837)
Q Consensus 569 ~~--~~~~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ 646 (837)
.. .+.+....+...+.. .+.++.| +..|||++..|++++. + .|.++. .+..+.+|++.+++
T Consensus 498 ~dp~~r~~~h~~ltf~~~y-~~~e~fv-lp~SHDEvvhgk~sl~----~-----kmpGd~------~~k~a~lR~~~~~~ 560 (730)
T PRK12568 498 RDPAERAHHHSQLTFGLVY-AFSERFV-LPLSHDEVVHGTGGLL----G-----QMPGDD------WRRFANLRAYLALM 560 (730)
T ss_pred hCchhhhhhhhhhhhhhhh-hhhccEe-ccCCCcccccCchhhh----h-----cCCCCH------HHHHHHHHHHHHHH
Confidence 63 344555556555543 4555554 7899999999988764 1 133321 24466778888999
Q ss_pred HhCCCCceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhc
Q 003230 647 MGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYG 725 (837)
Q Consensus 647 ltlpG~p~L~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~ 725 (837)
||+||.| |+|||+|||+. +|.+ ..+++|...++..++.+.+|+|+|++||+++|
T Consensus 561 ~~~PGkk-LlFmG~Efgq~~ew~~------------------------~~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~p 615 (730)
T PRK12568 561 WAHPGDK-LLFMGAEFGQWADWNH------------------------DQSLDWHLLDGARHRGMQQLVGDLNAALRRTP 615 (730)
T ss_pred HhCCCcc-eeeCchhhCCcccccC------------------------CCCccccccCChhHHHHHHHHHHHHHHHHhCh
Confidence 9999995 66999999994 6743 24689998887788999999999999999999
Q ss_pred CC------CCCcEEEEeecCCCcEEEEEc--C-----cEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccc
Q 003230 726 FM------TSEHQYVSRKDEGDRVIVFER--G-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKR 792 (837)
Q Consensus 726 ~L------~~g~~~i~~~~~~~~Vlaf~R--~-----~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~ 792 (837)
+| ..|++|+.+.+.+++|+||.| + .+|||+||+| ..+.+|+|++|.+|.|+++||||+..|||++.
T Consensus 616 aL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~-~~~~~Y~ig~p~~G~~~eilNsd~~~ygG~~~ 694 (730)
T PRK12568 616 ALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTP-QPHHDYRVGVPRAGGWREILNTDSAHYGGSNL 694 (730)
T ss_pred hhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCC-CCccCeEECCCCCCeEEEEEcCchhhhCCCCc
Confidence 98 367999999998999999999 1 2999999997 67899999999999999999999999999987
Q ss_pred cCCCcceeccccccCCCCeEEEEEEcCceEEEEEEc
Q 003230 793 LDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~ 828 (837)
.+.+ .+.+.+.+++++++++.|+|||++++||+++
T Consensus 695 ~n~~-~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 695 GNSG-RLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred CCCC-ceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 6644 4566677899999999999999999999875
No 6
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.3e-101 Score=905.43 Aligned_cols=576 Identities=27% Similarity=0.514 Sum_probs=482.9
Q ss_pred hhhcccccCCcEEeCC----cEEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 003230 188 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 263 (837)
Q Consensus 188 ~f~~~y~~lG~~~~~~----gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~ 263 (837)
.+...|+.||||.... |++||||||+|++|+|+||||+|++..++|.+.+.|+|+++||+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~-------~g~~Yky 91 (639)
T PRK14706 19 DLVRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGAR-------PGQRYKF 91 (639)
T ss_pred cccchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCC-------CCCEEEE
Confidence 4467899999998653 7999999999999999999999998889999988999999999753 5779999
Q ss_pred EEeCCCCc-cccCCccceecccCCCCCCCCcEEeCCCccccccccCCCC------CCCCCceEEEeecCCCCCC--CCCC
Q 003230 264 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP------KKPKSLRIYEAHVGMSSTE--PIIN 334 (837)
Q Consensus 264 ~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~IYE~hv~~f~~~--~~~G 334 (837)
+|+++.|. ..+.|||++++...+.. .++++++ .|.|++..+ ...++++|||+|||+|+.. +..|
T Consensus 92 ~I~~~~g~~~~~~DPYa~~~~~~~~~---~svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ 164 (639)
T PRK14706 92 RVTGAAGQTVDKMDPYGSFFEVRPNT---ASIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFL 164 (639)
T ss_pred EEECCCCCEEeccCcceEEEecCCCC---ceEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCcc
Confidence 99987654 47899999998877654 6888875 388875532 2235799999999999754 3468
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
+|+++++..++|||+|||||||||||+|++..++|||++++||+|+++|||++|||+||++||++||+||||+|+||++.
T Consensus 165 ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~ 244 (639)
T PRK14706 165 NYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPT 244 (639)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCc
Confidence 99999964459999999999999999999998899999999999999999999999999999999999999999999998
Q ss_pred CCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCcccccc
Q 003230 415 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 494 (837)
Q Consensus 415 ~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 494 (837)
+. .++..|||+...+|.....+++..|++..||+++++||+||+++++||++||||||||||++++|+|.|++... |
T Consensus 245 ~~-~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~-~- 321 (639)
T PRK14706 245 DE-SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE-W- 321 (639)
T ss_pred ch-hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc-c-
Confidence 75 57788998754334444457788899999999999999999999999999999999999999999999877632 3
Q ss_pred CCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHhhcchhh
Q 003230 495 GNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW 574 (837)
Q Consensus 495 ~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~~~~~~ 574 (837)
..+++|++.+.+++.||+++|+.+++.+|++++|||+++++|.+++|+.. |+|||++|+|+|+++++++++.. ..|
T Consensus 322 --~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~-~~~ 397 (639)
T PRK14706 322 --VPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQD-PLW 397 (639)
T ss_pred --cccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccC-chh
Confidence 46678999999999999999999999999999999999999999999875 99999999999999999988743 223
Q ss_pred hhhhhHHhhc---cCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCC
Q 003230 575 KMGAIVHTMT---NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGG 651 (837)
Q Consensus 575 ~~~~l~~~l~---~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG 651 (837)
.... ...++ ...+.++.| |++|||+++++++++.. .|..+. ....+..|++.+++||+||
T Consensus 398 r~~~-~~~lt~~~~y~~~e~~i-l~~SHDev~~~k~sl~~-k~~g~~--------------~~~~a~~r~~~~~~~t~PG 460 (639)
T PRK14706 398 RKYH-HHKLTFFNVYRTSENYV-LAISHDEVVHLKKSMVM-KMPGDW--------------YTQRAQYRAFLAMMWTTPG 460 (639)
T ss_pred hhhc-hhccchhhhhhccccEe-cCCCCccccCCccchHh-HcCCCH--------------HHHHHHHHHHHHHHHhCCC
Confidence 2211 11111 123344444 88999999998877542 222211 1234677888899999999
Q ss_pred CceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCC--
Q 003230 652 EAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT-- 728 (837)
Q Consensus 652 ~p~L~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~-- 728 (837)
.|+| |||+|||+. +|. ++++++|...+...++.|++|+|+|++||+++|+|.
T Consensus 461 ~pLi-FmG~EfG~~~ew~------------------------~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~g 515 (639)
T PRK14706 461 KKLL-FMGQEFAQGTEWN------------------------HDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRG 515 (639)
T ss_pred CcEE-EeccccCCCCCCC------------------------cccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhC
Confidence 9766 999999983 432 456788987665566789999999999999999994
Q ss_pred ----CCcEEEEeecCCCcEEEEEcC------cEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcc
Q 003230 729 ----SEHQYVSRKDEGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAE 798 (837)
Q Consensus 729 ----~g~~~i~~~~~~~~Vlaf~R~------~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~ 798 (837)
.+++|+.+.+.+++|+||.|. .+|||+||+| ..+.+|+|++|.+|+|+++||||+..|||+++.+. .
T Consensus 516 d~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~-~~~~~y~ig~p~~g~~~~i~nsd~~~~gG~g~~n~--~ 592 (639)
T PRK14706 516 DKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP-VYREQYRIGVPQGGEYRVLLSTDDGEYGGFGTQQP--D 592 (639)
T ss_pred CCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC-CCcCCeEECCCCCCeEEEEEcCCccccCCCCCCCC--c
Confidence 568889888888899999992 2999999997 67899999999999999999999999999998764 3
Q ss_pred eeccccccCCCCeEEEEEEcCceEEEEEEcC
Q 003230 799 YFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 829 (837)
Q Consensus 799 ~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~~ 829 (837)
+.+...+|+++++++.|+|||++++||++++
T Consensus 593 ~~~~~~~~~g~~~si~i~lp~~~~~~~~~~~ 623 (639)
T PRK14706 593 LMASQEGWHGQPHSLSLNLPPSSVLILEFVG 623 (639)
T ss_pred eeccccccCCCccEEEEEeCCcEEEEEEECC
Confidence 5667778999999999999999999999863
No 7
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7.1e-101 Score=936.99 Aligned_cols=582 Identities=28% Similarity=0.492 Sum_probs=495.6
Q ss_pred hcCchhhhhcccccCCcEEe--------CCcEEEEEeCCCcCeEEEEeecCCCCCCcccccc-CCCceEEEEeCCCCCCC
Q 003230 182 YEGGLAAFSRGYEKFGFIRS--------DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLPNNADGS 252 (837)
Q Consensus 182 ~~g~l~~f~~~y~~lG~~~~--------~~gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~-~~~GvW~~~ip~~~~g~ 252 (837)
+..+.+.+.+.|+.||||.. .+||+|+||||+|++|+|+||||+|++..++|.+ .+.|+|+++||+...
T Consensus 609 ~lf~~g~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~-- 686 (1224)
T PRK14705 609 HLIGEGRHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVA-- 686 (1224)
T ss_pred HHHhCCchhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCC--
Confidence 33344478889999999973 3489999999999999999999999998899987 467999999998654
Q ss_pred CCCCCCCEEEEEEeCCCCc-cccCCccceecccCCCCCCCCcEEeCCCccccccccCCC-----C---CCCCCceEEEee
Q 003230 253 PPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ-----P---KKPKSLRIYEAH 323 (837)
Q Consensus 253 ~~~~~g~~yk~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~---~~~~~~~IYE~h 323 (837)
|..|||+|.+.+|. ..+.|||+++....+.+ .|+|+|+. |.|++.. . ...++++|||+|
T Consensus 687 -----G~~Yky~i~~~~g~~~~k~DPyA~~~e~~p~~---aS~V~d~~----~~w~d~~W~~~r~~~~~~~~p~~IYEvH 754 (1224)
T PRK14705 687 -----GACYKFEILTKAGQWVEKADPLAFGTEVPPLT---ASRVVEAS----YAFKDAEWMSARAERDPHNSPMSVYEVH 754 (1224)
T ss_pred -----CCEEEEEEEcCCCcEEecCCccccccccCCCC---CeEEeCCC----CCcCChhhhhccccCCCCcCCcEEEEEE
Confidence 66999999987665 46789999888776654 58999873 6665432 1 123689999999
Q ss_pred cCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 003230 324 VGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 403 (837)
Q Consensus 324 v~~f~~~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~V 403 (837)
||+|+.. ++|++++++.|||||+|||||||||||+|+|..+||||++++||+|+++|||++|||+||++||++||+|
T Consensus 755 vgsf~~~---~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~V 831 (1224)
T PRK14705 755 LGSWRLG---LGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGV 831 (1224)
T ss_pred ecccccC---CchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEE
Confidence 9999873 8999999766899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccCCCcccccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccc
Q 003230 404 LMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 404 IlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
|||+|+||++.+. +++..|+|+. .|++.++ .+.+..|++..|||++++||+||+++++||++||||||||||+|++|
T Consensus 832 ILD~V~nH~~~d~-~~l~~fdg~~-~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~m 909 (1224)
T PRK14705 832 LLDWVPAHFPKDS-WALAQFDGQP-LYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASM 909 (1224)
T ss_pred EEEeccccCCcch-hhhhhcCCCc-ccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhh
Confidence 9999999999875 6788899874 4555554 47788999999999999999999999999999999999999999999
Q ss_pred cccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceeccccCCcccchhhhhhHHHH
Q 003230 483 MYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADK 562 (837)
Q Consensus 483 ~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~ 562 (837)
+|.|++...+.+ ..+.+|+++|.++++||+++|+.+++.+|++++|||+++.+|.+++|...||+||||+|||+|+++
T Consensus 910 ly~Dysr~~g~w--~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd 987 (1224)
T PRK14705 910 LYLDYSREEGQW--RPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHD 987 (1224)
T ss_pred hhcccccccccc--cccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHH
Confidence 999887654322 246788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc--chhhhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHH
Q 003230 563 WIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHK 640 (837)
Q Consensus 563 ~~~~lk~~--~~~~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~k 640 (837)
++++++.. .+.|....+...+.. .+.++.+ +..|||++..|++++. ..|+.++++ ..+.+|
T Consensus 988 ~l~Y~~~dp~~r~~~~~~ltf~~~y-a~~e~fv-l~~SHDevvhgk~sl~-~km~Gd~~~--------------k~a~lR 1050 (1224)
T PRK14705 988 SLKYASEDPINRKWHHGTITFSLVY-AFTENFL-LPISHDEVVHGKGSML-RKMPGDRWQ--------------QLANLR 1050 (1224)
T ss_pred HHHHhhhCcchhhcccchHHHHHHH-HhhcCEe-cccccccccccchhHH-HhCCCcHHH--------------HHHHHH
Confidence 99998863 345666666666654 2445544 6789999988877653 344444443 345568
Q ss_pred HHHHHHHhCCCCceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHH
Q 003230 641 MIRLVTMGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQH 719 (837)
Q Consensus 641 la~~l~ltlpG~p~L~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~ 719 (837)
++.+++|++||+| |+|||+|||+. +|.+ ...++|...+...++.++.|+|+||+
T Consensus 1051 ~~~a~~~~~PGk~-LlFMG~Efgq~~ew~~------------------------~~~LdW~ll~~~~h~~~~~~~rdLn~ 1105 (1224)
T PRK14705 1051 AFLAYQWAHPGKQ-LIFMGTEFGQEAEWSE------------------------QHGLDWFLADIPAHRGIQLLTKDLNE 1105 (1224)
T ss_pred HHHHHHHhcCCcC-EEECccccCCCCCccc------------------------cccCCCcccCChhhHHHHHHHHHHHH
Confidence 8889999999996 66999999995 6631 24689998877788999999999999
Q ss_pred HHHHhcCCC------CCcEEEEeecCCCcEEEEEc-----CcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcC
Q 003230 720 LEEKYGFMT------SEHQYVSRKDEGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFG 788 (837)
Q Consensus 720 LR~~~~~L~------~g~~~i~~~~~~~~Vlaf~R-----~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~g 788 (837)
||+++|+|. .|++|+.+.+.+++|++|.| +.++||+||+| ..+.+|+|++|.+|.|+++||||+..||
T Consensus 1106 ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp-~~~~~y~igvp~~G~y~eilnsd~~~yg 1184 (1224)
T PRK14705 1106 LYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSG-GPHKGYTLGVPAAGAWTEVLNTDHETYG 1184 (1224)
T ss_pred HHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCC-CCccCceECCCCCCeEEEEEeCchhhcC
Confidence 999999984 56889988888899999999 24999999997 6888999999999999999999999999
Q ss_pred CccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEc
Q 003230 789 GYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 789 G~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~ 828 (837)
|++..+.+ .+.+.+.+|+++++++.|+|||++++||++.
T Consensus 1185 Gsg~~n~~-~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1185 GSGVLNPG-SLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred CCCcCCCC-ceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 99987644 3556677899999999999999999999875
No 8
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-93 Score=860.65 Aligned_cols=609 Identities=28% Similarity=0.495 Sum_probs=491.9
Q ss_pred CCCcceecCCCCcchHHHHHHHHHHHHHHHHHHH-hhcCchhhhhcccccCCcEEeC----CcEEEEEeCCCcCeEEEEe
Q 003230 147 AGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDID-KYEGGLAAFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIG 221 (837)
Q Consensus 147 ~~~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~-~~~g~l~~f~~~y~~lG~~~~~----~gv~FrvWAP~A~~V~Lvg 221 (837)
+|..+.+.|||-.+. .+.. .++. ..+| ++...|+.||+|... +|++||||||+|++|+|+|
T Consensus 84 ~g~~~~k~DPyaf~~--~~~~---------~~~~~~~~g---~~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~g 149 (726)
T PRK05402 84 GGGEQLIDDPYRFGP--LLGE---------LDLYLFGEG---THLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVG 149 (726)
T ss_pred CCceeEeccccccCC--CCCH---------HHHHHHhCC---ccchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEE
Confidence 566688999998754 1110 1111 1234 678889999999875 7899999999999999999
Q ss_pred ecCCCCCCccccccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc-cccCCccceecccCCCCCCCCcEEeCCC
Q 003230 222 DFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPP 299 (837)
Q Consensus 222 DFN~w~~~~~~m~~~-~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 299 (837)
|||+|++..++|.+. +.|+|+++||+. ++|..|+|++...+|. .+..|||++.+...+.. .++++|++
T Consensus 150 dfn~w~~~~~~m~~~~~~Gvw~~~i~~~-------~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~---~s~v~d~~ 219 (726)
T PRK05402 150 DFNGWDGRRHPMRLRGESGVWELFIPGL-------GEGELYKFEILTADGELLLKADPYAFAAEVRPAT---ASIVADLS 219 (726)
T ss_pred EcCCCCCccccceEcCCCCEEEEEeCCC-------CCCCEEEEEEeCCCCcEeecCCCceEEEecCCCC---cEEEeCCc
Confidence 999999888899988 889999999974 3577999999877654 47899999988876654 58999974
Q ss_pred ccccccccCCCC--------CCCCCceEEEeecCCCCCC---CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCC
Q 003230 300 EEEKYVFQHPQP--------KKPKSLRIYEAHVGMSSTE---PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYAS 368 (837)
Q Consensus 300 ~~~~~~~~~~~~--------~~~~~~~IYE~hv~~f~~~---~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s 368 (837)
.|.|++..+ ...++++|||+|||+|+.+ ++.|||++++++.|||||+||||+||||||++++...+
T Consensus 220 ---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~ 296 (726)
T PRK05402 220 ---QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGS 296 (726)
T ss_pred ---cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCC
Confidence 577875532 2346799999999999853 56799999995335999999999999999999998889
Q ss_pred CCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCC-CCCcccCCCCCC
Q 003230 369 FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLF 447 (837)
Q Consensus 369 ~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~l 447 (837)
|||++++||+|+++|||++|||+||++||++||+||||+|+||++.++ .++..|+|+. .|++.+. .+.+..|++..|
T Consensus 297 ~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~ 374 (726)
T PRK05402 297 WGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDA-HGLARFDGTA-LYEHADPREGEHPDWGTLIF 374 (726)
T ss_pred CCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-cchhccCCCc-ceeccCCcCCccCCCCCccc
Confidence 999999999999999999999999999999999999999999998875 5677788863 4544333 356778999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCe
Q 003230 448 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEA 527 (837)
Q Consensus 448 n~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~ 527 (837)
|+++|+||++|+++++||++||||||||||++.+|++.+++...+.+ ..+.+++..+.++++||+++++.+++.+|++
T Consensus 375 n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~ 452 (726)
T PRK05402 375 NYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGRENLEAIDFLRELNAVVHEEFPGA 452 (726)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCcCCHHHHHHHHHHHHHHHHHCCCe
Confidence 99999999999999999999999999999999999988877654322 2345566778889999999999999999999
Q ss_pred EEEEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHhhc--chhhhhhhhHHhhccCcccccceecccCccccccc
Q 003230 528 VSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVG 605 (837)
Q Consensus 528 ~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~~--~~~~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g 605 (837)
++|||+++.++.++.+...+|+|||+.|+++++++++++++.. ...+....+...+.. .+.++. ++++|||+++.+
T Consensus 453 ~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~-~l~~sHD~~~~g 530 (726)
T PRK05402 453 LTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLY-AYSENF-VLPLSHDEVVHG 530 (726)
T ss_pred EEEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhH-hhhccc-cCCCCCceeeeC
Confidence 9999999999999999999999999999999999888887642 112222222211111 122333 478899999988
Q ss_pred ccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCC
Q 003230 606 DKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPG 685 (837)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~g 685 (837)
++++... +..++ ....+.+|++.+++||+||+|.| |||||+|+.+..+
T Consensus 531 ~~~l~~~-~~g~~--------------~~~~~~lrl~~~~~~t~pG~Pli-f~G~E~g~~~~~~---------------- 578 (726)
T PRK05402 531 KGSLLGK-MPGDD--------------WQKFANLRAYYGYMWAHPGKKLL-FMGGEFGQGREWN---------------- 578 (726)
T ss_pred cccHHhh-CCCCH--------------HHHHHHHHHHHHHHHHCCCcCEe-eCchhcCCCCCCC----------------
Confidence 7765422 22111 12356778899999999999766 9999999974211
Q ss_pred CCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCC------CcEEEEeecCCCcEEEEEcC------cEEE
Q 003230 686 NNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS------EHQYVSRKDEGDRVIVFERG------NLVF 753 (837)
Q Consensus 686 n~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~------g~~~i~~~~~~~~Vlaf~R~------~llv 753 (837)
.+++++|...+...++.+++|+|+|++||+++|+|+. ++.|+...+.+++|+||.|. .++|
T Consensus 579 -------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlv 651 (726)
T PRK05402 579 -------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLV 651 (726)
T ss_pred -------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEE
Confidence 2367899876555678999999999999999999963 46677666667789999992 4999
Q ss_pred EEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEcC
Q 003230 754 VFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 829 (837)
Q Consensus 754 v~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~~ 829 (837)
|+||++ ....+|+|++|.+|+|+++||||+..|||.+.++.. .+.+++.+|+++++++.|+|||++++||++..
T Consensus 652 v~N~~~-~~~~~y~i~~p~~g~~~~ilnsd~~~~gg~~~~~~~-~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 652 VCNFTP-VPRHDYRLGVPQAGRWREVLNTDAEHYGGSNVGNGG-GVHAEEVPWHGRPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred EEeCCC-CcccceEECCCCCCeEEEEEcCcchhhCCCCCCCCC-ceeccccccCCCCCEEEEEeCCCEEEEEEEcC
Confidence 999995 566789999998999999999999999999977644 56677778999999999999999999999853
No 9
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7.8e-94 Score=852.43 Aligned_cols=582 Identities=29% Similarity=0.533 Sum_probs=474.2
Q ss_pred hhhcccccCCcEEeCC----cEEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 003230 188 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 263 (837)
Q Consensus 188 ~f~~~y~~lG~~~~~~----gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~ 263 (837)
++.+.|+.||+|.... |++||+|||+|++|+|+||||+|++..++|.+.+.|+|+++||+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~-------~g~~Y~y 91 (633)
T PRK12313 19 EHFRLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAK-------EGQLYKY 91 (633)
T ss_pred CcccchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCC-------CCCEEEE
Confidence 4567799999999877 8999999999999999999999998889999988999999999643 4679999
Q ss_pred EEeCCCCc-cccCCccceecccCCCCCCCCcEEeCCCccccccccCCCC--------CCCCCceEEEeecCCCCCC--CC
Q 003230 264 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP--------KKPKSLRIYEAHVGMSSTE--PI 332 (837)
Q Consensus 264 ~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~~IYE~hv~~f~~~--~~ 332 (837)
++...+|. .++.|||++...+.+.. .++++|++ .|.|++..+ ...++++|||+|||+|+.+ ++
T Consensus 92 ~v~~~~g~~~~~~DPya~~~~~~~~~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~ 165 (633)
T PRK12313 92 HISRQDGYQVEKIDPFAFYFEARPGT---ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGR 165 (633)
T ss_pred EEECCCCeEEecCCCceEEEecCCCC---ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCC
Confidence 99766554 47899999988766544 68999984 577876431 1226799999999999864 56
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 333 ~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
.|||++++++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||+
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~ 245 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHF 245 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 79999999644699999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCcccc
Q 003230 413 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVA 492 (837)
Q Consensus 413 s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~ 492 (837)
+.++ .++..|+|+...++.....+++..|+..+||++||+||++|+++++||++||||||||||++.+|++.|++....
T Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~ 324 (633)
T PRK12313 246 PKDD-DGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGE 324 (633)
T ss_pred CCCc-ccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccC
Confidence 9875 456677776432233333456668999999999999999999999999999999999999999999877762222
Q ss_pred ccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHhhcc-
Q 003230 493 FTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD- 571 (837)
Q Consensus 493 f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~~~- 571 (837)
|.+ +.+++..+.++++||+++++.+++.+|++++|||+++.+|.++.+...+|+|||+++++.+++.++.+++...
T Consensus 325 ~~~---~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~ 401 (633)
T PRK12313 325 WTP---NKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPI 401 (633)
T ss_pred cCC---cccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCcc
Confidence 332 2345556778899999999999999999999999999999999999999999999999999999998886431
Q ss_pred -hhhhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCC
Q 003230 572 -EDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG 650 (837)
Q Consensus 572 -~~~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlp 650 (837)
..+....+...+.. .+.++. ++++|||+++.|+.++...+ ..+++ ...+++|++.+++||+|
T Consensus 402 ~~~~~~~~~~~~~~~-~~~e~~-~l~~sHD~~~~g~~~~~~~~-~g~~~--------------~~~~~~r~~~~~~~t~p 464 (633)
T PRK12313 402 YRKYHHNLLTFSFMY-AFSENF-VLPFSHDEVVHGKKSLMHKM-PGDRW--------------QQFANLRLLYTYMITHP 464 (633)
T ss_pred ccccccccchHHHhh-hhhccc-ccCCCCcccccCCccHHHhc-CCCHH--------------HHHHHHHHHHHHHHhCC
Confidence 22322222222221 222332 47789999988877765322 22211 23467788999999999
Q ss_pred CCceEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCC-
Q 003230 651 GEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT- 728 (837)
Q Consensus 651 G~p~L~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~- 728 (837)
|+|+| |||+|+|+. +|. .+++++|...+...++.|++|+|+||+||+++|+|+
T Consensus 465 G~Pli-f~G~E~g~~~~~~------------------------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~ 519 (633)
T PRK12313 465 GKKLL-FMGSEFGQFLEWK------------------------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWE 519 (633)
T ss_pred CCcEe-ecccccccCccCC------------------------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhc
Confidence 99766 999999995 432 125788987665668899999999999999999996
Q ss_pred -----CCcEEEEeecCCCcEEEEEcCc------EEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCc
Q 003230 729 -----SEHQYVSRKDEGDRVIVFERGN------LVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNA 797 (837)
Q Consensus 729 -----~g~~~i~~~~~~~~Vlaf~R~~------llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~ 797 (837)
.++.++...+.+++|+||.|.. ++||+||++ ....+|+|++|.+|+|+++||||+..|||.++.+. .
T Consensus 520 ~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~-~~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~~~~-~ 597 (633)
T PRK12313 520 LDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTP-VEREDYRIGVPVAGIYEEILNTDSEEFGGSGKGNN-G 597 (633)
T ss_pred ccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCC-CcccceeECCCCCCeEEEEEcCCchhcCCCCcCCC-C
Confidence 3467776655567899999943 999999996 56778999999899999999999999999998643 3
Q ss_pred ceeccccccCCCCeEEEEEEcCceEEEEEEcCC
Q 003230 798 EYFSLEGWYDDQPHSFLVYAPSRTAVVYALADE 830 (837)
Q Consensus 798 ~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~~~ 830 (837)
.+.+....++++++++.|+|||++++||++..+
T Consensus 598 ~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 598 TVKAQEGPWHGRPQSLTLTLPPLGALVLKPKRR 630 (633)
T ss_pred ceeecccccCCCCCEEEEEeCCCEEEEEEEccc
Confidence 456666678999999999999999999998654
No 10
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=3.2e-93 Score=842.11 Aligned_cols=578 Identities=29% Similarity=0.522 Sum_probs=466.1
Q ss_pred hhhcccccCCcEEeC----CcEEEEEeCCCcCeEEEEeecCCCCCCccccccC-CCceEEEEeCCCCCCCCCCCCCCEEE
Q 003230 188 AFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVK 262 (837)
Q Consensus 188 ~f~~~y~~lG~~~~~----~gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~-~~GvW~~~ip~~~~g~~~~~~g~~yk 262 (837)
++...|+.||+|... +|++||||||+|++|+|++|||+|+...++|.+. +.|+|+++||+.. +|..|+
T Consensus 9 ~~~~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~-------~g~~Y~ 81 (613)
T TIGR01515 9 SHFRSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIG-------EGELYK 81 (613)
T ss_pred ccCChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCC-------CCCEEE
Confidence 556779999999986 6899999999999999999999998888899887 4899999999753 577999
Q ss_pred EEEeCCCCc-cccCCccceecccCCCCCCCCcEEeCCCc--cccccccCCCC-C--CCCCceEEEeecCCCCCCCCCCCH
Q 003230 263 IHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHPQP-K--KPKSLRIYEAHVGMSSTEPIINTY 336 (837)
Q Consensus 263 ~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~-~--~~~~~~IYE~hv~~f~~~~~~Gt~ 336 (837)
|+|....|. ....|||++.+...+.. .++++|++. +.+..|...++ . ..++++|||+|||+|+.. |||
T Consensus 82 y~v~~~~g~~~~~~DPYA~~~~~~~~~---~s~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~ 155 (613)
T TIGR01515 82 YEIVTNNGEIRLKADPYAFYAEVRPNT---ASLVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSY 155 (613)
T ss_pred EEEECCCCcEEEeCCCCEeeeccCCCC---cEEEECCccCccCchhhhhcccccCcccCCceEEEEehhhccCC---CCH
Confidence 999876554 47899999987765543 588998752 12223443322 1 234789999999999865 999
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCC
Q 003230 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 416 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~ 416 (837)
++|+++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+.
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 99995335999999999999999999998889999999999999999999999999999999999999999999999875
Q ss_pred cccccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccC
Q 003230 417 LDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG 495 (837)
Q Consensus 417 ~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~ 495 (837)
..+..|++.. .|++.+. .+.++.|++++||+++|+||++|+++++||++||||||||||++++|++.++|...+.+.
T Consensus 236 -~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~ 313 (613)
T TIGR01515 236 -HGLAEFDGTP-LYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS 313 (613)
T ss_pred -chhhccCCCc-ceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc
Confidence 4566777753 4544433 355678999999999999999999999999999999999999999999888776543211
Q ss_pred CcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHhhcc--hh
Q 003230 496 NYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD--ED 573 (837)
Q Consensus 496 ~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~~~--~~ 573 (837)
.+.+++..+.++++||+++++.|++.+|++++|||+++.++.++.+...+|+|||++|++.+++.++.+++... ..
T Consensus 314 --~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~ 391 (613)
T TIGR01515 314 --PNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQ 391 (613)
T ss_pred --ccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHh
Confidence 12345566788999999999999999999999999999999999999999999999999999998888875321 11
Q ss_pred hhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCc
Q 003230 574 WKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEA 653 (837)
Q Consensus 574 ~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p 653 (837)
+....+...+. ..+.++.+ +++|||+++.|++++... |.+++ ....++.|++.+++||+||+|
T Consensus 392 ~~~~~~~~~~~-~~~~e~~~-~~~sHD~~~~g~~~i~~~---------~~g~~------~~~~~~~r~~~~~~~t~pG~p 454 (613)
T TIGR01515 392 YHHQLITFSML-YAFSENFV-LPLSHDEVVHGKKSLLNK---------MPGDY------WQKFANYRALLGYMWAHPGKK 454 (613)
T ss_pred hccccccHHHH-HHhhhccc-cCCCCCCcccCcccHHHh---------CCCch------HHHHHHHHHHHHHHHhCCCCC
Confidence 11111111111 12233333 789999998888776532 22211 122467788999999999997
Q ss_pred eEeecccccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCC----
Q 003230 654 YLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT---- 728 (837)
Q Consensus 654 ~L~y~G~E~G~~-e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~---- 728 (837)
.| |||+|+|+. +|.+ +++++|...+...++.+++|+|+|++||+++|+|.
T Consensus 455 li-f~G~E~g~~~~~~~------------------------~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~ 509 (613)
T TIGR01515 455 LL-FMGSEFAQGSEWND------------------------TEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDF 509 (613)
T ss_pred EE-EcchhcCcCCCCCC------------------------CccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCC
Confidence 66 999999994 5521 25788986666678899999999999999999984
Q ss_pred --CCcEEEEeecCCCcEEEEEcC------cEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCccee
Q 003230 729 --SEHQYVSRKDEGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYF 800 (837)
Q Consensus 729 --~g~~~i~~~~~~~~Vlaf~R~------~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~~~ 800 (837)
.+++|+...+.+++|+||.|. .++||+||++ .+..+|+|++|.+|+|+++|||++..|||.++++... ..
T Consensus 510 ~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~-~~~~~Y~i~~p~~g~~~~il~Sd~~~~gG~g~~~~~~-~~ 587 (613)
T TIGR01515 510 DPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTP-VVRHQYRVGVPQPGQYREVLNSDSETYGGSGQGNKGP-LS 587 (613)
T ss_pred CCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCC-CCccceEeCCCCCCeEEEEEeCChhhcCCCCcCCCCc-ee
Confidence 457778776667789999992 5999999996 6778999999888999999999999999999887553 45
Q ss_pred ccccccCCCCeEEEEEEcCceEEEEE
Q 003230 801 SLEGWYDDQPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 801 ~~~~~~~~~~~~l~l~Lp~~s~~Vl~ 826 (837)
+....++++++++.|+|||++++||+
T Consensus 588 ~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 588 AEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred ccccccCCCCCEEEEEeCCcEEEEeC
Confidence 56667899999999999999999985
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-92 Score=807.47 Aligned_cols=580 Identities=30% Similarity=0.489 Sum_probs=480.9
Q ss_pred hhhhcccccCCcEEeCC---cEEEEEeCCCcCeEEEEeecCCCCCCccccccC-CCceEEEEeCCCCCCCCCCCCCCEEE
Q 003230 187 AAFSRGYEKFGFIRSDT---GITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVK 262 (837)
Q Consensus 187 ~~f~~~y~~lG~~~~~~---gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~-~~GvW~~~ip~~~~g~~~~~~g~~yk 262 (837)
....+.|+.||||..+. |++|+||||+|++|+|+||||+|+...++|... ++|+|++|||+... |.+||
T Consensus 17 ~~~~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~-------G~~Yk 89 (628)
T COG0296 17 GTHLRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPP-------GTRYK 89 (628)
T ss_pred ccchhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCC-------CCeEE
Confidence 34566789999998643 599999999999999999999999988888744 78999999997544 67999
Q ss_pred EEEeCCCCcc-ccCCccceecccCCCCCCCCcEEeCCCccccccccC----CCC--CCCCCceEEEeecCCCCCCCCCCC
Q 003230 263 IHMDTPSGIK-DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQH----PQP--KKPKSLRIYEAHVGMSSTEPIINT 335 (837)
Q Consensus 263 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~--~~~~~~~IYE~hv~~f~~~~~~Gt 335 (837)
|++.++.|.. ...|||+++....+.+ .|+|++++ .|.|++ ... ...++++|||+|||+|+.+ ..-+
T Consensus 90 y~l~~~~g~~~~~~DP~a~~~~~~p~~---aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~ 162 (628)
T COG0296 90 YELIDPSGQLRLKADPYARRQEVGPHT---ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLG 162 (628)
T ss_pred EEEeCCCCceeeccCchhhccCCCCCC---cceecCCC---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcC
Confidence 9999998853 5678999988777766 68999975 377763 222 2347899999999999986 5555
Q ss_pred HHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 336 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
+.++++++|||||+||||||+||||.|||++.|||||++.||||++|||||+|||+|||+||++||.||||+|+||++.+
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d 242 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD 242 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC
Confidence 66666689999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccC
Q 003230 416 VLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG 495 (837)
Q Consensus 416 ~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~ 495 (837)
. .++..|+|+....+....++.++.|++..+|++++|||+||++|++||+++|||||||+|||.+|+|.|+.+... ..
T Consensus 243 ~-~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~-~~ 320 (628)
T COG0296 243 G-NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEG-EW 320 (628)
T ss_pred c-chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhh-cc
Confidence 5 789999998654444445688999999999999999999999999999999999999999999999998555321 11
Q ss_pred CcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHhhcc--hh
Q 003230 496 NYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD--ED 573 (837)
Q Consensus 496 ~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~~~--~~ 573 (837)
-.+.+|+.++..+++|++.+|+.|+...|++++|+|+|+++|..+.+...+|+||+|+++|+++++.+.++.+.. +.
T Consensus 321 -~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~ 399 (628)
T COG0296 321 -VPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRK 399 (628)
T ss_pred -cccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccc
Confidence 123456778999999999999999999999999999999999999999999999999999999999988887542 34
Q ss_pred hhhhhhHHhhccCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCc
Q 003230 574 WKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEA 653 (837)
Q Consensus 574 ~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p 653 (837)
+..+.+...+. ......+.|+.||||+..|++++...+ .++.. ...+..|.+.++++++||+|
T Consensus 400 ~~h~~~tf~~~--y~~se~~~l~~sHDevvhGk~sl~~rm---------~g~~~------~~~a~lr~~~a~~~~~Pgk~ 462 (628)
T COG0296 400 YHHGELTFGLL--YAFSENVVLPLSHDEVVHGKRSLGERM---------PGDAW------QKFANLRALAAYMWLHPGKP 462 (628)
T ss_pred cccCCCccccc--cccceeEeccccccceeecccchhccC---------Ccchh------hhHHHHHHHHHHHHhCCCce
Confidence 55554444332 112345779999999999998875332 22221 33567788899999999996
Q ss_pred eEeecccccCC-CCCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccc----cccchHHHHHHHHHHHHHHHhcCC-
Q 003230 654 YLNFMGNEFGH-PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD----YLRYRGMQEFDRAMQHLEEKYGFM- 727 (837)
Q Consensus 654 ~L~y~G~E~G~-~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~----~~~~~~l~~f~r~Li~LR~~~~~L- 727 (837)
|+|||+|||+ .+|..+- .++|...+ ..+++.+.+|.+.|+++.+..+.+
T Consensus 463 -LLFMG~Efgq~~e~~~~~------------------------~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~ 517 (628)
T COG0296 463 -LLFMGEEFGQGREWNFFS------------------------SLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLH 517 (628)
T ss_pred -eeecchhhccCCCCcccC------------------------CCChhhhhhccccchHHHHHHHHHhhHHhhccCCccc
Confidence 5599999999 4776442 35553332 234789999999999888776554
Q ss_pred -----CCCcEEEEeecCCCcEEEEEc------C-cEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCC
Q 003230 728 -----TSEHQYVSRKDEGDRVIVFER------G-NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDH 795 (837)
Q Consensus 728 -----~~g~~~i~~~~~~~~Vlaf~R------~-~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~ 795 (837)
.+++.|+..++.+.+|++|.| + .+++|+||++ ..+.+|+++++.+|.|++++|||...+||++..+.
T Consensus 518 ~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~-~~~~~y~~~~~~~g~~~~~lntd~~~~ggs~~~~~ 596 (628)
T COG0296 518 EQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTP-VPRVDYRVGVPVAGRWREVLNTDLAEYGGSGAGNL 596 (628)
T ss_pred hhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCC-CcccccccCCcccccEEEeccchHHHhcCCccccc
Confidence 578889988887778999999 2 4788888885 68899999999899999999999999999998776
Q ss_pred CcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003230 796 NAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 796 ~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~ 826 (837)
...+.++...++++..++.++|||.+++||+
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 597 GLPVSGEDILWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred cceecceeeeccCcceeeEEecCCceeeEee
Confidence 5546666677788999999999999999986
No 12
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.4e-74 Score=683.77 Aligned_cols=511 Identities=18% Similarity=0.258 Sum_probs=371.5
Q ss_pred cCCcEEeCCcEEEEEeCCCcCeEEEEeecCCCCCC----ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003230 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN----ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 195 ~lG~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~~~----~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~ 270 (837)
+||+|+..+|++|+||||+|++|+|++ |++|+.. .++|.+.++|+|+++||+.. +|..|+|+++..+.
T Consensus 11 ~lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~-------~g~~Y~y~v~~~~~ 82 (605)
T TIGR02104 11 ELGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDL-------HGYFYTYQVCINGK 82 (605)
T ss_pred CCccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCC-------CCCEEEEEEEcCCC
Confidence 899999999999999999999999998 8888543 56899988999999999754 57799999988655
Q ss_pred ccccCCccceecccCCCCCCCCcEEeCCCccccccccCCC---CCCCCCceEEEeecCCCCCCCC-----CCCHHhhHhh
Q 003230 271 IKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ---PKKPKSLRIYEAHVGMSSTEPI-----INTYANFRDD 342 (837)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~IYE~hv~~f~~~~~-----~Gt~~~~~~~ 342 (837)
.....|||++....... .++++|+...+.+.|.... ...+++++|||+|||+|+.++. .|||+++++.
T Consensus 83 ~~~~~DPya~~~~~~~~----~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~ 158 (605)
T TIGR02104 83 WRETVDPYAKAVTVNGK----RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTET 158 (605)
T ss_pred eEEEcCCCcceeccCCC----cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeecc
Confidence 55789999987654322 5889998655567786543 3345789999999999986542 5899999852
Q ss_pred ----------hhhHHHHcCCCEEEEcCcccCCCC--------CCCCCccccccCCCCCCCC--------HHHHHHHHHHH
Q 003230 343 ----------VLPRIKRLGYNAVQIMAVQEHSYY--------ASFGYHVTNFFAPSSRCGT--------PDDLKSLIDKA 396 (837)
Q Consensus 343 ----------~LdyLk~LGvt~I~LmPi~e~~~~--------~s~GY~v~~y~a~~~~~Gt--------~edfk~LV~~a 396 (837)
+|||||+||||+||||||++++.. .+|||++++||+|+++||+ ++|||+||++|
T Consensus 159 ~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~ 238 (605)
T TIGR02104 159 GTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQAL 238 (605)
T ss_pred CccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHH
Confidence 499999999999999999998642 3699999999999999997 59999999999
Q ss_pred HHcCCEEEEeeccccccCCCcccccCCCCCCCCcccc-CCCCCcc-cC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCe
Q 003230 397 HELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHS-GSRGYHW-MW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDG 473 (837)
Q Consensus 397 H~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~-~~~g~~~-~w-~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDG 473 (837)
|++||+||||+|+||++... ...|++..+.||+. +..+... .+ ...++|+.+|+||++|+++++||++||||||
T Consensus 239 H~~Gi~VilDvV~NH~~~~~---~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDG 315 (605)
T TIGR02104 239 HENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDG 315 (605)
T ss_pred HHCCCEEEEEEEcCCccCCC---CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999998542 23577766665543 3332211 11 1257999999999999999999999999999
Q ss_pred EEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceecccc-----CC
Q 003230 474 FRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQD-----GG 548 (837)
Q Consensus 474 fR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~-----gg 548 (837)
||||++.++ ..+||+++++.+++..|++++|||.|...+.+...... .+
T Consensus 316 fR~D~~~~~--------------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~ 369 (605)
T TIGR02104 316 FRFDLMGIH--------------------------DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQ 369 (605)
T ss_pred EEEechhcC--------------------------CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCC
Confidence 999999665 13589999999999999999999999765443221100 11
Q ss_pred cccchhhhhhHHHHHHHHH-hhcchhh------hhhhhHHhhcc----------CcccccceecccCcccccccccchhh
Q 003230 549 VGFDYRLQMAIADKWIELL-KKRDEDW------KMGAIVHTMTN----------RRWLEKCVAYAESHDQALVGDKTIAF 611 (837)
Q Consensus 549 lgfD~~~~~~~~d~~~~~l-k~~~~~~------~~~~l~~~l~~----------~~~~~~~v~ylenHD~~r~g~~~~~~ 611 (837)
++....|+..+.+.++... ......+ ....+...+.. ...+.++|||++|||+.|+.++...
T Consensus 370 ~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~- 448 (605)
T TIGR02104 370 MPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLSL- 448 (605)
T ss_pred CCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHHh-
Confidence 1101112333333222110 0000011 11122222211 1234578999999999988764211
Q ss_pred hccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCC-
Q 003230 612 WLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSY- 690 (837)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~- 690 (837)
..+ ....+...++.|++.+++|++||+|+| |||||+|+... +++++|
T Consensus 449 --~~~------------~~~~~~~~~r~rla~alllts~GiP~i-y~GdE~g~s~~-----------------g~~n~y~ 496 (605)
T TIGR02104 449 --ANP------------DETEEQLKKRQKLATAILLLSQGIPFL-HAGQEFMRTKQ-----------------GDENSYN 496 (605)
T ss_pred --hCC------------CCCHHHHHHHHHHHHHHHHHcCCCcee-ecchhhhccCC-----------------CCCCCcc
Confidence 000 011223466789999999999999877 99999999642 233333
Q ss_pred -cccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEE-----EE-eecCCCcEEEEEcC---------cEEEE
Q 003230 691 -DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQY-----VS-RKDEGDRVIVFERG---------NLVFV 754 (837)
Q Consensus 691 -~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~-----i~-~~~~~~~Vlaf~R~---------~llvv 754 (837)
..++++++|...+ .++.+++|+|+||+||+++|+|+.+... +. ....+++|++|.|. .++||
T Consensus 497 ~~d~~~~ldW~~~~--~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv 574 (605)
T TIGR02104 497 SPDSINQLDWDRKA--TFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVI 574 (605)
T ss_pred CCCcccccCccccc--cchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEE
Confidence 3457799998643 4678999999999999999999876321 11 12235679999992 48999
Q ss_pred EECCCCCcccceEEcccCCccEEEEEeCCCC
Q 003230 755 FNFHWNSSYSDYRVGCLKPGKYKIVLDSDDP 785 (837)
Q Consensus 755 ~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~ 785 (837)
+|++. . .+.+.+|..|.|+.+++++..
T Consensus 575 ~N~s~-~---~~~v~lp~~~~w~~~~~~~~~ 601 (605)
T TIGR02104 575 HNANP-E---PVDIQLPSDGTWNVVVDNKNA 601 (605)
T ss_pred EeCCC-C---CeEEECCCCCCEEEEECCCcC
Confidence 99984 2 356666667899999998643
No 13
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=2.8e-71 Score=645.45 Aligned_cols=479 Identities=26% Similarity=0.374 Sum_probs=356.2
Q ss_pred EEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCccceeccc
Q 003230 205 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQ 284 (837)
Q Consensus 205 v~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~~~~~~~~~~~~~~~ 284 (837)
|+||||||+|++|.|+++ ...++|.+.++|+|+++||+.. +|..|+|+|++ .....|||++....
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~k~~~GvW~~~v~~~~-------~G~~Y~y~v~g---~~~v~DPya~~~~~ 65 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQRLGDGWFEITVPPVG-------PGDRYGYVLDD---GTPVPDPASRRQPD 65 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCeECCCCEEEEEECCCC-------CCCEEEEEEee---eEEecCcccccccc
Confidence 589999999999999973 2367999999999999999754 46799999975 34678899987533
Q ss_pred CCCCCCCCcEEeCCCccccccccCCCCC--CCCCceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCccc
Q 003230 285 APGEIPYNGIYYDPPEEEKYVFQHPQPK--KPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQE 362 (837)
Q Consensus 285 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~IYE~hv~~f~~~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e 362 (837)
... ..++|+||. .|.|+++.+. ..++++|||+|||+|+. .|||++++ ++|||||+||||+||||||++
T Consensus 66 ~~~---~~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~-~~l~yl~~LGv~~i~L~Pi~~ 135 (542)
T TIGR02402 66 GVH---GPSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAI-EKLPYLADLGITAIELMPVAQ 135 (542)
T ss_pred CCC---CCeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHH-HhhHHHHHcCCCEEEeCcccc
Confidence 222 258999984 5888876542 34789999999999987 49999999 699999999999999999999
Q ss_pred CCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccC
Q 003230 363 HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 442 (837)
Q Consensus 363 ~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w 442 (837)
++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.++ ..+..| .+ ||... ....|
T Consensus 136 ~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~-~~~~~~---~~-y~~~~---~~~~w 207 (542)
T TIGR02402 136 FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG-NYLPRY---AP-YFTDR---YSTPW 207 (542)
T ss_pred CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc-cccccc---Cc-cccCC---CCCCC
Confidence 997778999999999999999999999999999999999999999999998764 222233 22 66432 33456
Q ss_pred CCCCCCCCCH---HHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHH
Q 003230 443 DSRLFNYGSW---EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 519 (837)
Q Consensus 443 ~~~~ln~~~~---eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~ 519 (837)
+ ..+|+.++ +||++|+++++||++||||||||||++.+|.. .+++.||+++++.
T Consensus 208 g-~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~----------------------~~~~~~l~~~~~~ 264 (542)
T TIGR02402 208 G-AAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIAD----------------------TSAKHILEELARE 264 (542)
T ss_pred C-CccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcc----------------------ccHHHHHHHHHHH
Confidence 5 57999999 99999999999999999999999999987731 2356799999999
Q ss_pred hhccCCC---eEEEEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHhhcchhh------hhhhhHHhhcc-----
Q 003230 520 IHGLYPE---AVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW------KMGAIVHTMTN----- 585 (837)
Q Consensus 520 v~~~~P~---~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~~~~~~------~~~~l~~~l~~----- 585 (837)
++++.|+ +++|||.+...+..+.+...++++||..|+..+.+.+...+.+....+ ....+...+..
T Consensus 265 ~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~ 344 (542)
T TIGR02402 265 VHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYD 344 (542)
T ss_pred HHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccC
Confidence 9999999 999999998778777777778899999888887777766665322111 11122222110
Q ss_pred --------C----c----ccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhC
Q 003230 586 --------R----R----WLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGL 649 (837)
Q Consensus 586 --------~----~----~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltl 649 (837)
+ . -+.++|+|++|||+. |+.++.. .+... .+.+++|++.+++||+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~--gn~~~~~---------Rl~~~--------~~~~~~~la~alllt~ 405 (542)
T TIGR02402 345 GEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQI--GNRALGE---------RLSQL--------LSPGSLKLAAALLLLS 405 (542)
T ss_pred ccccccccccCCCCCCCCCHHHEEEEccCcccc--cccchhh---------hhhhc--------CCHHHHHHHHHHHHHc
Confidence 0 0 123679999999973 2222110 00000 0125789999999999
Q ss_pred CCCceEeecccccCCCCC----CCCCCCCC--CCCCC------------CcCCCCCCCCcccCccccCCccccccchHHH
Q 003230 650 GGEAYLNFMGNEFGHPEW----IDFPRGDQ--RLPNG------------QFVPGNNFSYDKCRRRFDLGDADYLRYRGMQ 711 (837)
Q Consensus 650 pG~p~L~y~G~E~G~~e~----~d~p~~~~--~~~~~------------~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~ 711 (837)
||+|+| |||||+|+..- .|++..+. ...+| ...+........++++++|...+...+.+++
T Consensus 406 pGiP~I-y~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~ 484 (542)
T TIGR02402 406 PYTPLL-FMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWL 484 (542)
T ss_pred CCCcee-eccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHH
Confidence 999987 99999999642 12211000 00000 0112222223346788999877655678999
Q ss_pred HHHHHHHHHHHHhcCCCCCc-EEEEe-ecCCCcEEEEEc--CcEEEEEECCC
Q 003230 712 EFDRAMQHLEEKYGFMTSEH-QYVSR-KDEGDRVIVFER--GNLVFVFNFHW 759 (837)
Q Consensus 712 ~f~r~Li~LR~~~~~L~~g~-~~i~~-~~~~~~Vlaf~R--~~llvv~Nf~~ 759 (837)
+|+|+||+|||++++|+.+. ..+.. ...++.|+++.. +.++|++|+++
T Consensus 485 ~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~ 536 (542)
T TIGR02402 485 AFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLST 536 (542)
T ss_pred HHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCC
Confidence 99999999999999986542 22222 134577888876 57999999994
No 14
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=3.6e-70 Score=648.25 Aligned_cols=554 Identities=19% Similarity=0.282 Sum_probs=383.2
Q ss_pred ccCCcEEeCCcEEEEEeCCCcCeEEEEeecCCCCCC---ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC--
Q 003230 194 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-- 268 (837)
Q Consensus 194 ~~lG~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~~~---~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~-- 268 (837)
.+||+++.++|++|+||||+|++|+|+. |+++... .++|.+.++|||+++||+.. +|..|+|+++++
T Consensus 5 ~~LGa~~~~~g~~F~vwap~A~~V~L~l-~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~-------~g~~Y~yrv~g~~~ 76 (688)
T TIGR02100 5 FPLGATWDGQGVNFALFSANAEKVELCL-FDAQGEKEEARLPLPERTDDIWHGYLPGAQ-------PGQLYGYRVHGPYD 76 (688)
T ss_pred cCCCeEEeCCcEEEEEECCCCCEEEEEE-EcCCCCceeeEEecccCCCCEEEEEECCCC-------CCCEEEEEEeeeeC
Confidence 4799999999999999999999999986 6655432 46899888999999999754 467999999874
Q ss_pred --CC-----ccccCCccceecccCCC-------------------------CCCCCcEEeCCCccccccccCC--CCC-C
Q 003230 269 --SG-----IKDSIPAWIKFSVQAPG-------------------------EIPYNGIYYDPPEEEKYVFQHP--QPK-K 313 (837)
Q Consensus 269 --~~-----~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~d~~~~~~~~~~~~--~~~-~ 313 (837)
.| ....+|||++.+..... .....++|+|+ .|.|++. .|. .
T Consensus 77 ~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~ 152 (688)
T TIGR02100 77 PENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTP 152 (688)
T ss_pred CCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCC
Confidence 12 13568999987754321 00125778876 3888754 333 3
Q ss_pred CCCceEEEeecCCCCCC------CCCCCHHhhHhh-hhhHHHHcCCCEEEEcCcccCCCC---------CCCCCcccccc
Q 003230 314 PKSLRIYEAHVGMSSTE------PIINTYANFRDD-VLPRIKRLGYNAVQIMAVQEHSYY---------ASFGYHVTNFF 377 (837)
Q Consensus 314 ~~~~~IYE~hv~~f~~~------~~~Gt~~~~~~~-~LdyLk~LGvt~I~LmPi~e~~~~---------~s~GY~v~~y~ 377 (837)
+++++|||+||++|+.. ...|||+||++. +|||||+||||+||||||++++.. .+|||++.|||
T Consensus 153 ~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~ 232 (688)
T TIGR02100 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFF 232 (688)
T ss_pred ccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccc
Confidence 47899999999999863 235999999952 599999999999999999998642 36999999999
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccc-cCCCCCCC-CccccCCC--CCcccC--CCCCCC
Q 003230 378 APSSRC---GTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSR--GYHWMW--DSRLFN 448 (837)
Q Consensus 378 a~~~~~---Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~-~~fdg~~~-~yf~~~~~--g~~~~w--~~~~ln 448 (837)
+|+++| |+++|||+||++||++||+||||+|+||++..+..+. ..|.+.++ .||+.... +....| ..++||
T Consensus 233 a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln 312 (688)
T TIGR02100 233 APEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLN 312 (688)
T ss_pred ccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCcccccc
Confidence 999999 6799999999999999999999999999998753322 23444433 34443322 211111 236899
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeE
Q 003230 449 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 528 (837)
Q Consensus 449 ~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~ 528 (837)
+++|+||++|+++++||++||||||||||++..|.....+. + ....+++.++.. ...|+++
T Consensus 313 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~----------------~-~~~~~~~~i~~d--~~~~~~~ 373 (688)
T TIGR02100 313 LSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGF----------------D-MLSGFFTAIRQD--PVLAQVK 373 (688)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCC----------------c-ccHHHHHHHHhC--cccCCeE
Confidence 99999999999999999999999999999999875421111 0 123467777652 4678999
Q ss_pred EEEecCCCCCcceeccccCCcccc---hhhhhhHHHHHHHHHhhcchhhhhhhhHHhhcc--------Ccccccceeccc
Q 003230 529 SIGEDVSGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWLEKCVAYAE 597 (837)
Q Consensus 529 ~iaE~~~~~p~~~~~~~~gglgfD---~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~~--------~~~~~~~v~yle 597 (837)
+|||.|...+. .+..+ .|+ ..||..+.+.++.++++... ....+...+.. .+.+.++|||++
T Consensus 374 ligE~W~~~~~---~~~~~--~~~~~~~~~Nd~frd~ir~f~~g~~~--~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~ 446 (688)
T TIGR02100 374 LIAEPWDIGPG---GYQVG--NFPPGWAEWNDRYRDDMRRFWRGDAG--MIGELANRLTGSSDLFEHNGRRPWASINFVT 446 (688)
T ss_pred EEEeeecCCCC---ccccc--CCCCceEEecHHHHHHHHHHHcCCCC--cHHHHHHHHhCCHhhccccCCCcCEEEEEEe
Confidence 99999964322 11112 233 34677777777778775321 12233333322 123567899999
Q ss_pred Ccccccccccchhhh---ccChh---------HHHhhhcCCCCC--cchhhHHHHHHHHHHHHHhCCCCceEeecccccC
Q 003230 598 SHDQALVGDKTIAFW---LMDKD---------MYDFMALDRPST--PRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 663 (837)
Q Consensus 598 nHD~~r~g~~~~~~~---~~~~~---------~~~~~~~~~~~~--~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G 663 (837)
|||+.++.++..... ..+.+ .-+......+.. .+.+...+++|++.+++|++||+|+| |||||||
T Consensus 447 ~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i-~~GdE~g 525 (688)
T TIGR02100 447 AHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPML-LAGDEFG 525 (688)
T ss_pred CCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcee-eecHhhc
Confidence 999998766422100 00000 000000000111 11223457788899999999999877 9999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCcc--cCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCc----------
Q 003230 664 HPEWIDFPRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH---------- 731 (837)
Q Consensus 664 ~~e~~d~p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~---------- 731 (837)
++. .|++++|.. ..+.++|...+ .++.|++|+|+||+|||++|+|+.+.
T Consensus 526 ~t~-----------------~G~~n~y~~~~~~~~~dW~~~~--~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~ 586 (688)
T TIGR02100 526 RTQ-----------------QGNNNAYCQDNEIGWVDWSLDE--GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADG 586 (688)
T ss_pred cCC-----------------CCCCCCccCCCcccccCccccc--ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCC
Confidence 976 266777753 35689998654 67899999999999999999887541
Q ss_pred -EEEEee-------------cCCCcEEEEEc------------CcEEEEEECCCCCcccceEEcccCC-ccEEEEEeCCC
Q 003230 732 -QYVSRK-------------DEGDRVIVFER------------GNLVFVFNFHWNSSYSDYRVGCLKP-GKYKIVLDSDD 784 (837)
Q Consensus 732 -~~i~~~-------------~~~~~Vlaf~R------------~~llvv~Nf~~~~~~~~~~l~~~~~-g~~~~vlnsd~ 784 (837)
..+.+. +....+|+|.. +.++|++|.+. ....+.| |.. ..|+.+++|..
T Consensus 587 ~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~--~~~~~~l--P~~~~~w~~~~dt~~ 662 (688)
T TIGR02100 587 LKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGP--EPVPFKL--PGGGGRWELVLDTAD 662 (688)
T ss_pred CCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCC--CCeEEEC--CCCCCcEEEEecCCC
Confidence 112221 12347888876 14899999984 2333444 432 58999999854
Q ss_pred CCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003230 785 PLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 785 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~ 826 (837)
.. ... . . . ...-.+.+|++|++||.
T Consensus 663 ~~--~~~-~----~--~--------~~~~~~~v~~~s~~vl~ 687 (688)
T TIGR02100 663 EE--APG-I----H--L--------DAGQEAELPARSVLLLR 687 (688)
T ss_pred CC--Ccc-c----c--c--------cCCCEEEEcCCEEEEEe
Confidence 21 110 0 0 0 00135889999999986
No 15
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.7e-69 Score=658.34 Aligned_cols=584 Identities=19% Similarity=0.276 Sum_probs=390.9
Q ss_pred HHHHHHHhhcCchhhhhcccccCCcEEeCCc-EEEEEeCCCcCeEEEEe-ecCCCCC--CccccccCCCceEEEEeCCCC
Q 003230 174 QMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIG-DFNNWNP--NADIMTQNEFGVWEIFLPNNA 249 (837)
Q Consensus 174 ~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~g-v~FrvWAP~A~~V~Lvg-DFN~w~~--~~~~m~~~~~GvW~~~ip~~~ 249 (837)
+.+++.+.|+| +||+++.++| ++|+||||+|++|+|++ |+++|+. ..++|.+.+.|||+++||+..
T Consensus 307 ~~~d~~y~y~g----------~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~ 376 (1111)
T TIGR02102 307 RLKDEMYAYDG----------KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKEN 376 (1111)
T ss_pred hhhhhhhccCC----------CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcc
Confidence 46666666665 7999998777 79999999999999997 5555654 357999999999999999644
Q ss_pred CCCCCCCCCCEEEEEEeCCCCccccCCccceecccCCC------CCCCCcEEeCCCcc--ccccccCCC-CCCCCCceEE
Q 003230 250 DGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPG------EIPYNGIYYDPPEE--EKYVFQHPQ-PKKPKSLRIY 320 (837)
Q Consensus 250 ~g~~~~~~g~~yk~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~--~~~~~~~~~-~~~~~~~~IY 320 (837)
.|.. ..+|..|+|+|...+.....+|||++.+...++ ....+++++|++.. +.|.|.+.. ...+++++||
T Consensus 377 ~G~~-d~~G~~Y~Y~V~~~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIY 455 (1111)
T TIGR02102 377 TGID-SLTGYYYHYEITRGGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIY 455 (1111)
T ss_pred cCcc-cCCCceEEEEEECCCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEE
Confidence 3331 236889999998766566788999987653221 01236788888543 247776533 3356899999
Q ss_pred EeecCCCCCCC--------CCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCC------------------CCCCCCccc
Q 003230 321 EAHVGMSSTEP--------IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY------------------YASFGYHVT 374 (837)
Q Consensus 321 E~hv~~f~~~~--------~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~------------------~~s~GY~v~ 374 (837)
|+|||+|+.++ ..|+|++|+ ++|||||+|||||||||||++++. ..+|||+|.
T Consensus 456 ElHVrdFt~d~~~~~~~~~~~Gtf~gl~-ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~ 534 (1111)
T TIGR02102 456 EAHVRDFTSDPAIAGDLTAQFGTFAAFV-EKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQ 534 (1111)
T ss_pred EEechhhCcCCCCCcccccCCcCHHHHH-HhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcC
Confidence 99999998542 369999999 699999999999999999997421 125999999
Q ss_pred cccCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccC-CCCC-cccCCC
Q 003230 375 NFFAPSSRCGT--------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSG-SRGY-HWMWDS 444 (837)
Q Consensus 375 ~y~a~~~~~Gt--------~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~-~~g~-~~~w~~ 444 (837)
+||+|+++||+ ++|||+||++||++||+||||||+||++..+ .|++..+.||+.. ..+. ...|+.
T Consensus 535 ~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~g 609 (1111)
T TIGR02102 535 NYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFGG 609 (1111)
T ss_pred cCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccc-----cccccCCCceEeeCCCCCcccccCC
Confidence 99999999998 5899999999999999999999999998764 4777767776532 2232 234566
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccC
Q 003230 445 RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 524 (837)
Q Consensus 445 ~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~ 524 (837)
..+|.++++||++|+++++||++||||||||||+|.++ ..++++.++..++++.
T Consensus 610 ~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~--------------------------d~~~~~~~~~~l~~~d 663 (1111)
T TIGR02102 610 GRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDH--------------------------DAASIEIAYKEAKAIN 663 (1111)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccC--------------------------CHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999998643 1247788888899999
Q ss_pred CCeEEEEecCCCCCcc----eeccccCCcccchhhhhhHHHHHHHHHhhcch-----h------hhhhhhHHhhccC---
Q 003230 525 PEAVSIGEDVSGMPTF----CIPVQDGGVGFDYRLQMAIADKWIELLKKRDE-----D------WKMGAIVHTMTNR--- 586 (837)
Q Consensus 525 P~~~~iaE~~~~~p~~----~~~~~~gglgfD~~~~~~~~d~~~~~lk~~~~-----~------~~~~~l~~~l~~~--- 586 (837)
|++++|||.|...... +.+.....+.++.. ...+.+.+++.+++... . ..+..+...+...
T Consensus 664 P~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~-ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~ 742 (1111)
T TIGR02102 664 PNIIMIGEGWRTYAGDEGDPVQAADQDWMKYTET-VGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHN 742 (1111)
T ss_pred cCEEEEEecccccCCCCcccccccchhhHhcCCc-ccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccc
Confidence 9999999999742111 11111111111100 01122333444442100 1 1122233333221
Q ss_pred ---cccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccC
Q 003230 587 ---RWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 663 (837)
Q Consensus 587 ---~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G 663 (837)
..+.++|+|++|||+.++.|+.......+. ..........++.|++.+++|+.+|+|+| ++||||+
T Consensus 743 ~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~----------~~~e~~~~~~~r~rla~~llllSQGiPfi-~aGqEf~ 811 (1111)
T TIGR02102 743 FEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDP----------KVAENQEEIHRRIRLGNLMVLTSQGTAFI-HSGQEYG 811 (1111)
T ss_pred cccCCcccEEEEEecCCCCchHhhhhhccccCc----------ccccchHHHHHHHHHHHHHHHHhCcHhhh-hcchhhh
Confidence 245678999999999998775321000000 00000012346778888999999999877 9999999
Q ss_pred CCCCCCCCC-----CCCCCC---------CCCcC---CCCCCCCcc--cCccccCCcccc----ccchHHHHHHHHHHHH
Q 003230 664 HPEWIDFPR-----GDQRLP---------NGQFV---PGNNFSYDK--CRRRFDLGDADY----LRYRGMQEFDRAMQHL 720 (837)
Q Consensus 664 ~~e~~d~p~-----~~~~~~---------~~~~~---~gn~~s~~~--~r~~~~w~~~~~----~~~~~l~~f~r~Li~L 720 (837)
+.+..+-+. .+...| .|..+ ....+||+. .-+.++|..... +-+..+.+|+|.||+|
T Consensus 812 RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~l 891 (1111)
T TIGR02102 812 RTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIEL 891 (1111)
T ss_pred cccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHH
Confidence 975332110 000011 11110 122566643 466899987532 1236899999999999
Q ss_pred HHHhcCCCCCcE-----EEEeec--------CCCcEEEEEc-----CcEEEEEECCCCCcccceEEcccCC----ccEEE
Q 003230 721 EEKYGFMTSEHQ-----YVSRKD--------EGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKP----GKYKI 778 (837)
Q Consensus 721 R~~~~~L~~g~~-----~i~~~~--------~~~~Vlaf~R-----~~llvv~Nf~~~~~~~~~~l~~~~~----g~~~~ 778 (837)
|+++|+++-+.. .+.+.. ..+.|++|.- +.++|++|.++ .. ..+.+|.. ..|+.
T Consensus 892 Rk~~~~fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~--~~--~~~~lp~~~~~~~~~~v 967 (1111)
T TIGR02102 892 RRSTDAFRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD--KA--RTLTLGEDYAHLTVGEV 967 (1111)
T ss_pred HhcCccccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC--CC--EEEECCCCcccccceEE
Confidence 999998854321 122211 1357899986 36899999884 22 34444432 37888
Q ss_pred EEeCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEc
Q 003230 779 VLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 779 vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~ 828 (837)
+++.+.. |...+..... +... .-.|+|||+|++||...
T Consensus 968 ~~~~~~~---g~~~~~~~~~-------~~~~--~~~~~v~~~s~~V~~~~ 1005 (1111)
T TIGR02102 968 VVDAEQA---GVTGIAEPKG-------VELT--AEGLKLDPLTAAVVRVG 1005 (1111)
T ss_pred EEccccc---Cccccccccc-------cccc--CCeEEEcCcEEEEEEec
Confidence 8875432 2111110000 0000 12589999999999876
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5.5e-69 Score=633.59 Aligned_cols=548 Identities=20% Similarity=0.296 Sum_probs=371.7
Q ss_pred cccCCcEEeCCcEEEEEeCCCcCeEEEEeecCCCC-CCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC--
Q 003230 193 YEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS-- 269 (837)
Q Consensus 193 y~~lG~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~-~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~-- 269 (837)
..+||++++++|++|+||||+|++|+|++ |+++. ....+|.+.++|+|+++||+.. +|..|+|+|+++.
T Consensus 9 ~~pLGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~-------~G~~Y~yrv~g~~~p 80 (658)
T PRK03705 9 PTPLGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGAR-------PGLRYGYRVHGPWQP 80 (658)
T ss_pred CCCcceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCC-------CCCEEEEEEccccCc
Confidence 45899999999999999999999999998 77653 3457898888999999999754 4779999998752
Q ss_pred --C-----ccccCCccceecccCCCC------------------CCCCcEEeCCCccccccccCCCC-C-CCCCceEEEe
Q 003230 270 --G-----IKDSIPAWIKFSVQAPGE------------------IPYNGIYYDPPEEEKYVFQHPQP-K-KPKSLRIYEA 322 (837)
Q Consensus 270 --~-----~~~~~~~~~~~~~~~~~~------------------~~~~~~~~d~~~~~~~~~~~~~~-~-~~~~~~IYE~ 322 (837)
| ....+|||++.+...... ...++++.++ +|.|++..+ . .+++++|||+
T Consensus 81 ~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~ 156 (658)
T PRK03705 81 AQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEA 156 (658)
T ss_pred ccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEE
Confidence 2 134689999987643110 0124556653 588986543 2 3478999999
Q ss_pred ecCCCCC-CC-----CCCCHHhhHh-hhhhHHHHcCCCEEEEcCcccCCC---------CCCCCCccccccCCCCCCCCH
Q 003230 323 HVGMSST-EP-----IINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSY---------YASFGYHVTNFFAPSSRCGTP 386 (837)
Q Consensus 323 hv~~f~~-~~-----~~Gt~~~~~~-~~LdyLk~LGvt~I~LmPi~e~~~---------~~s~GY~v~~y~a~~~~~Gt~ 386 (837)
|||+|+. ++ ..|||+++++ .+|||||+||||+||||||++++. .++|||+++|||+|+++|||.
T Consensus 157 hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~ 236 (658)
T PRK03705 157 HVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASG 236 (658)
T ss_pred ehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCC
Confidence 9999985 22 3599999995 369999999999999999999854 257999999999999999994
Q ss_pred -----HHHHHHHHHHHHcCCEEEEeeccccccCCCcccc-cCCCCCCC-CccccCCCCCcccC--CCCCCCCCCHHHHHH
Q 003230 387 -----DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSRGYHWMW--DSRLFNYGSWEVLRF 457 (837)
Q Consensus 387 -----edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~-~~fdg~~~-~yf~~~~~g~~~~w--~~~~ln~~~~eV~~~ 457 (837)
+|||+||++||++||+||||+|+||++.....+. ..+.+.++ .||.....+....| ..++||+++|+|+++
T Consensus 237 ~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~ 316 (658)
T PRK03705 237 PETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDW 316 (658)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHH
Confidence 7999999999999999999999999987432221 23444433 34444433332233 337899999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCC
Q 003230 458 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGM 537 (837)
Q Consensus 458 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~ 537 (837)
|+++++||++||||||||||+|.+|... ..|. . ...+++.++. ..+.|++++|||.|...
T Consensus 317 iid~l~~W~~e~gVDGFRfD~a~~l~~~-----~~~~------------~-~~~~~~ai~~--d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 317 AIDCLRYWVETCHVDGFRFDLATVLGRT-----PEFR------------Q-DAPLFTAIQN--DPVLSQVKLIAEPWDIG 376 (658)
T ss_pred HHHHHHHHHHHhCCCEEEEEcHhhhCcC-----cccc------------h-hhHHHHHHhh--CccccceEEEEecccCC
Confidence 9999999999999999999999988421 1111 0 1123444432 24668999999999654
Q ss_pred CcceeccccCCcccc---hhhhhhHHHHHHHHHhhcchhhhhhhhHHhhc--------cCcccccceecccCcccccccc
Q 003230 538 PTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--------NRRWLEKCVAYAESHDQALVGD 606 (837)
Q Consensus 538 p~~~~~~~~gglgfD---~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~--------~~~~~~~~v~ylenHD~~r~g~ 606 (837)
+.. +..+. |+ ..||..+.+.++.++..... ...++...+. ..+.+.++|||+++||+.++.|
T Consensus 377 ~~~---~~~g~--~~~~~~~~Nd~fRd~ir~f~~~~~~--~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D 449 (658)
T PRK03705 377 PGG---YQVGN--FPPPFAEWNDHFRDAARRFWLHGDL--PLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRD 449 (658)
T ss_pred CCh---hhhcC--CCcceEEEchHHHHHHHHHHccCCC--cHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHH
Confidence 321 11121 22 13455555666666543211 1122222221 1234678999999999988876
Q ss_pred cchhhhc---cChh---------HHHhhhcCCC--CCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCC
Q 003230 607 KTIAFWL---MDKD---------MYDFMALDRP--STPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPR 672 (837)
Q Consensus 607 ~~~~~~~---~~~~---------~~~~~~~~~~--~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~ 672 (837)
+...... .+.+ .-+......+ ...+.....++.|++.+++|+++|+|+| |||+|||++.
T Consensus 450 ~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i-~~GdE~grtq------ 522 (658)
T PRK03705 450 CVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPML-LAGDEHGHSQ------ 522 (658)
T ss_pred HHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHH-HhhHHhccCC------
Confidence 4321000 0000 0000000000 0112233456778899999999999988 9999999976
Q ss_pred CCCCCCCCCcCCCCCCCCcc--cCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCc---------EEEEeec---
Q 003230 673 GDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH---------QYVSRKD--- 738 (837)
Q Consensus 673 ~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~---------~~i~~~~--- 738 (837)
.|++++|+. ..+.++|... .+.+.+|+|+||+|||++|+|+... .|+....
T Consensus 523 -----------~G~nN~y~~~~~i~~~dW~~~----~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~ 587 (658)
T PRK03705 523 -----------HGNNNAYCQDNALTWLDWSQA----DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPL 587 (658)
T ss_pred -----------CCCCCCccCCCCccccccchh----hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcC
Confidence 267777754 3467999753 3699999999999999999886422 2321111
Q ss_pred ------CCCcEEEEEc-CcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcceeccccccCCCCe
Q 003230 739 ------EGDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPH 811 (837)
Q Consensus 739 ------~~~~Vlaf~R-~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~ 811 (837)
.....++|.- +.++|++|.+. .. ..+.+|. +.|+.+++.+.. +.. +.
T Consensus 588 ~~~~w~~~~~~~~~~~~~~~~v~~N~~~--~~--~~~~lp~-~~w~~~~~~~~~---~~~--------------~~---- 641 (658)
T PRK03705 588 SADEWQQGPKQLQILLSDRWLIAINATL--EV--TEIVLPE-GEWHAIPPFAGE---DNP--------------VI---- 641 (658)
T ss_pred ChhHhCCcceEEEEEECCCEEEEECCCC--CC--eEEECCC-cceEEEEccCCC---ccc--------------cc----
Confidence 1134566655 67999999884 22 3445454 789999654331 000 00
Q ss_pred EEEEEEcCceEEEEEE
Q 003230 812 SFLVYAPSRTAVVYAL 827 (837)
Q Consensus 812 ~l~l~Lp~~s~~Vl~~ 827 (837)
...+.+|++|.+|+..
T Consensus 642 ~~~~~~~~~~~~~~~~ 657 (658)
T PRK03705 642 TAVWHGPAHGVCVFQR 657 (658)
T ss_pred CceeeecCcEEEEEec
Confidence 1346799999999863
No 17
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=9.1e-66 Score=615.42 Aligned_cols=554 Identities=17% Similarity=0.243 Sum_probs=370.9
Q ss_pred HHHHHHHhhcCchhhhhcccccCCcEEeCCcEEEEEeCCCcCeEEEEeecCCCC-CCccccccC-CCceEEEEeCCCCCC
Q 003230 174 QMCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQN-EFGVWEIFLPNNADG 251 (837)
Q Consensus 174 ~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~-~~~~~m~~~-~~GvW~~~ip~~~~g 251 (837)
..+++++.|+|.- ..||++++++|++|+||||+|++|.|++..++++ ...++|.+. +.|+|++++|+.+.
T Consensus 113 ~~lD~~y~y~~~~-------~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~- 184 (898)
T TIGR02103 113 GVLDALYAYAGPA-------LSLGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWK- 184 (898)
T ss_pred hhhhHHhhcCCCC-------CCCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCC-
Confidence 3455566666510 2499999999999999999999999998666663 445799887 78999999997654
Q ss_pred CCCCCCCCEEEEEEeC--C-CCc---cccCCccceecccCCCCCCCCcEEeCCCc--cccccccCC---CCC--CCCCce
Q 003230 252 SPPIPHGSRVKIHMDT--P-SGI---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHP---QPK--KPKSLR 318 (837)
Q Consensus 252 ~~~~~~g~~yk~~v~~--~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~---~~~--~~~~~~ 318 (837)
|..|+|+|+. | .|. ....|||++.... ++. .++++|+.. ..+..|... +|. .+++++
T Consensus 185 ------G~~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als~-n~~---~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~i 254 (898)
T TIGR02103 185 ------GAYYRYEVTVYHPSTGKVETYLVTDPYSVSLSA-NSE---YSQVVDLNDPALKPEGWDALAMPKPQLASFADMV 254 (898)
T ss_pred ------CCEeEEEEEEecCCCCeECCeEEeCcCcceEcC-CCC---CeEEeCCccccCCCcchhhcccccCCcCCCcccE
Confidence 5688888873 2 232 3578999987653 343 588998753 256678643 232 468999
Q ss_pred EEEeecCCCCCC------CCCCCHHhhHhh------hhhHHHHcCCCEEEEcCcccCCC---------------------
Q 003230 319 IYEAHVGMSSTE------PIINTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY--------------------- 365 (837)
Q Consensus 319 IYE~hv~~f~~~------~~~Gt~~~~~~~------~LdyLk~LGvt~I~LmPi~e~~~--------------------- 365 (837)
|||+|||+||.. ...|+|.+|++. .|.||++||||||+||||+++..
T Consensus 255 IYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~ 334 (898)
T TIGR02103 255 LYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCEL 334 (898)
T ss_pred EEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhcc
Confidence 999999999853 246999999952 36666678999999999998731
Q ss_pred -----------------------------------------CCCCCCccccccCCCCCCCC-------HHHHHHHHHHHH
Q 003230 366 -----------------------------------------YASFGYHVTNFFAPSSRCGT-------PDDLKSLIDKAH 397 (837)
Q Consensus 366 -----------------------------------------~~s~GY~v~~y~a~~~~~Gt-------~edfk~LV~~aH 397 (837)
..+|||+|.+||+|+++|++ ..|||+||++||
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH 414 (898)
T TIGR02103 335 NPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALN 414 (898)
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHH
Confidence 12799999999999999998 379999999999
Q ss_pred HcCCEEEEeeccccccCCCcccccCCCCCCCCccccCC-CCCc-ccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEE
Q 003230 398 ELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYH-WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFR 475 (837)
Q Consensus 398 ~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~-~g~~-~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR 475 (837)
++||+||||||+||++..++.....++...+.||+... .|.. ...+..+++.++++||++|+++++||++||||||||
T Consensus 415 ~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFR 494 (898)
T TIGR02103 415 KTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFR 494 (898)
T ss_pred HCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999998765444456776676776432 2321 112235678999999999999999999999999999
Q ss_pred EcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcce-ecccc--------
Q 003230 476 FDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFC-IPVQD-------- 546 (837)
Q Consensus 476 ~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~-~~~~~-------- 546 (837)
||+|.++ ..+||+++++.+++++|+++++||.|....... .....
T Consensus 495 fDlm~~~--------------------------~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~ 548 (898)
T TIGR02103 495 FDLMGHH--------------------------PKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAG 548 (898)
T ss_pred EechhhC--------------------------CHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCC
Confidence 9999877 245899999999999999999999996321111 01111
Q ss_pred CCcc-cchhhhhhHHHHHHHHHhhcc-----------hhhhhh----------------------------hhHHhh---
Q 003230 547 GGVG-FDYRLQMAIADKWIELLKKRD-----------EDWKMG----------------------------AIVHTM--- 583 (837)
Q Consensus 547 gglg-fD~~~~~~~~d~~~~~lk~~~-----------~~~~~~----------------------------~l~~~l--- 583 (837)
.++| |+-++ ++.+++.. .++..+ .+...+
T Consensus 549 ~~ig~FnD~~--------RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~ 620 (898)
T TIGR02103 549 TGIGTFSDRL--------RDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDF 620 (898)
T ss_pred CCeEEeccch--------hhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccc
Confidence 1122 22222 22222100 000000 000000
Q ss_pred ---------------c-------cCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHH
Q 003230 584 ---------------T-------NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKM 641 (837)
Q Consensus 584 ---------------~-------~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kl 641 (837)
. ....+.++|||+++||+.++.|+... ..+.....+...+.+++
T Consensus 621 ~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~--------------~~~~~~~~~~r~r~~~l 686 (898)
T TIGR02103 621 VLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISY--------------KAAAETPSAERVRMQAV 686 (898)
T ss_pred cccccccccccccccccCcCccccccCHHHheeeeeccCCccHHHHHHh--------------hCCCCCCHHHHHHHHHH
Confidence 0 00234578999999999999876321 00111122345677889
Q ss_pred HHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcc--cCccccCCcccc---------------
Q 003230 642 IRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADY--------------- 704 (837)
Q Consensus 642 a~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~--------------- 704 (837)
+.++.|+.+|+|+| .+|+||...+-.+ .+||+. .-++++|.....
T Consensus 687 a~a~~~lsQGipF~-haG~E~lRSK~~~-----------------~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~ 748 (898)
T TIGR02103 687 SLSTVMLGQGIPFF-HAGSELLRSKSFD-----------------RDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSN 748 (898)
T ss_pred HHHHHHHhChhhHH-hcchHhhcCCCCC-----------------CCCCcCchhhheecccccccccccCCCcccccccc
Confidence 99999999999988 9999999976432 222221 122344433211
Q ss_pred -----------------ccchHHHHHHHHHHHHHHHhcCCCCCc-----EEEEeecC----CCcEEEEEc----------
Q 003230 705 -----------------LRYRGMQEFDRAMQHLEEKYGFMTSEH-----QYVSRKDE----GDRVIVFER---------- 748 (837)
Q Consensus 705 -----------------~~~~~l~~f~r~Li~LR~~~~~L~~g~-----~~i~~~~~----~~~Vlaf~R---------- 748 (837)
.....+.+|++.||+||+++|+++-+. ..+.+... .++||+|.-
T Consensus 749 w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~ 828 (898)
T TIGR02103 749 WPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRNTGPDQIPGLIVMSIDDGGIQAGAS 828 (898)
T ss_pred hhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEeccCCcCCCCEEEEEEcCCccccccc
Confidence 124688999999999999999986331 12333332 267999864
Q ss_pred -----CcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEE
Q 003230 749 -----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAV 823 (837)
Q Consensus 749 -----~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~ 823 (837)
+.++||+|-+++ ..++ +.......|+..-.... ++...+... .+... .-++++||+|++
T Consensus 829 ~d~~~~~ivVv~Na~~~--~~~~-~~~~~~~~~~l~~~~~~---~~d~~v~~~--------~~~~~--~~~~~vp~~s~~ 892 (898)
T TIGR02103 829 LDPRYDGIVVIFNARPE--EVTL-SPDFAGTGLELHAVQQA---SGDESVAKS--------VYSAA--NGTFTVPAWTTA 892 (898)
T ss_pred cccccCeEEEEEcCCCc--cEEE-ecccCCCcEEEEecccc---cCccccccc--------eeecc--CCEEEEcCcEEE
Confidence 248999999853 2223 33222335766422110 111111100 00000 136899999999
Q ss_pred EEEE
Q 003230 824 VYAL 827 (837)
Q Consensus 824 Vl~~ 827 (837)
||..
T Consensus 893 V~~~ 896 (898)
T TIGR02103 893 VFVL 896 (898)
T ss_pred EEEe
Confidence 9975
No 18
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.2e-63 Score=594.81 Aligned_cols=486 Identities=17% Similarity=0.237 Sum_probs=328.9
Q ss_pred cCCcEEeCCcEEEEEeCCCcCeEEEEeecCCCCC----CccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC--C
Q 003230 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT--P 268 (837)
Q Consensus 195 ~lG~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~~----~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~--~ 268 (837)
+||+++++++++|+||||+|++|.|+. |++++. ..++|. .++|||++++++.++ |..|+|+|+. +
T Consensus 214 ~LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~-------G~~Y~Y~V~v~~p 284 (970)
T PLN02877 214 PLGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWE-------GCYYVYEVSVYHP 284 (970)
T ss_pred CCcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCCC-------CCeeEEEEeeccc
Confidence 799999999999999999999999998 666532 135786 678999999998665 5578888863 2
Q ss_pred C-Cc---cccCCccceecccCCCCCCCCcEEeCCCc--cccccccC---CCC--CCCCCceEEEeecCCCCCCC------
Q 003230 269 S-GI---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQH---PQP--KKPKSLRIYEAHVGMSSTEP------ 331 (837)
Q Consensus 269 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~---~~~--~~~~~~~IYE~hv~~f~~~~------ 331 (837)
. |. ....|||++....+ +. .+++.|+.. ..+..|.. +.| ..+++++|||+|||+||..+
T Consensus 285 ~~g~~~~~~v~DPYA~als~n-g~---~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~ 360 (970)
T PLN02877 285 STGKVETCYANDPYARGLSAD-GR---RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPD 360 (970)
T ss_pred CCCcccccccCCccceEEecC-CC---ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcC
Confidence 1 22 35689999876543 32 477777653 24567864 233 24689999999999998642
Q ss_pred CCCCHHhhHhh------hhhHHHHcCCCEEEEcCcccCCC-------------------------------------CCC
Q 003230 332 IINTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY-------------------------------------YAS 368 (837)
Q Consensus 332 ~~Gt~~~~~~~------~LdyLk~LGvt~I~LmPi~e~~~-------------------------------------~~s 368 (837)
..|+|.+|++. .|+||++||||||||||+++++. ..+
T Consensus 361 ~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yN 440 (970)
T PLN02877 361 FRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYN 440 (970)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCC
Confidence 35999999952 36666666999999999998742 257
Q ss_pred CCCccccccCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeccccccCCCccc-ccCCCCCCCCcccc-CCCCCc
Q 003230 369 FGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-LNMFDGTDGHYFHS-GSRGYH 439 (837)
Q Consensus 369 ~GY~v~~y~a~~~~~Gt-------~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~-~~~fdg~~~~yf~~-~~~g~~ 439 (837)
|||+|.+||+|+++|+| +.|||+||++||++||+||||||+||++..++++ ...++...+.||+. +..|..
T Consensus 441 WGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~ 520 (970)
T PLN02877 441 WGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFI 520 (970)
T ss_pred CCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCc
Confidence 99999999999999998 4689999999999999999999999998765543 34577777766654 333321
Q ss_pred ccC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHH
Q 003230 440 WMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVND 518 (837)
Q Consensus 440 ~~w-~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~ 518 (837)
..+ +....+.++++||++|+++++||++||||||||||+|.++... .|..+++
T Consensus 521 ~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~--------------------------tm~~~~~ 574 (970)
T PLN02877 521 ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKR--------------------------TMVRAKD 574 (970)
T ss_pred ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHH--------------------------HHHHHHH
Confidence 111 1234577899999999999999999999999999999887321 3344444
Q ss_pred Hhhcc-------C-CCeEEEEecCCCCCc--cee---cccc----CCcc-cchhhhhhHHHHHHHHHhhcc-------hh
Q 003230 519 MIHGL-------Y-PEAVSIGEDVSGMPT--FCI---PVQD----GGVG-FDYRLQMAIADKWIELLKKRD-------ED 573 (837)
Q Consensus 519 ~v~~~-------~-P~~~~iaE~~~~~p~--~~~---~~~~----gglg-fD~~~~~~~~d~~~~~lk~~~-------~~ 573 (837)
.++++ . |+++++||.|..... ..+ ..+. .++| |+-++ ++.+++.. .+
T Consensus 575 ~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~--------RDavkGg~~F~~~~~qG 646 (970)
T PLN02877 575 ALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRI--------RDAMLGGSPFGHPLQQG 646 (970)
T ss_pred HHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchh--------HHHHcCCCCCCCcCCCc
Confidence 44444 3 889999999953210 000 0000 1222 22222 22222100 00
Q ss_pred hhh-----------------------------hhhHHhhc--------------------c------CcccccceecccC
Q 003230 574 WKM-----------------------------GAIVHTMT--------------------N------RRWLEKCVAYAES 598 (837)
Q Consensus 574 ~~~-----------------------------~~l~~~l~--------------------~------~~~~~~~v~ylen 598 (837)
+.. ..+...+. + ...+.++|||+++
T Consensus 647 f~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~ 726 (970)
T PLN02877 647 FVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSA 726 (970)
T ss_pred eecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeec
Confidence 000 00000110 0 1135678999999
Q ss_pred cccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCC
Q 003230 599 HDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLP 678 (837)
Q Consensus 599 HD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~ 678 (837)
||+.++.|+... ..+.....+...+.++++.++.++.+|+|+| .+|+||...+-.
T Consensus 727 HDN~TL~D~l~~--------------~~~~~~s~~~r~r~~~la~aiv~lsQGipF~-haG~E~lRSK~~---------- 781 (970)
T PLN02877 727 HDNETLFDIISL--------------KTPMEISVDERCRINHLATSIIALSQGIPFF-HAGDEILRSKSL---------- 781 (970)
T ss_pred cCCchHHHHHHh--------------hcCCCCCHHHHHHHHHHHHHHHHHhChhhHH-hcchhhhcCCCC----------
Confidence 999999886321 0111112334567889999999999999988 999999997643
Q ss_pred CCCcCCCCCCCCcc--cCccccCCccc---------cccc-----------------------hHHHHHHHHHHHHHHHh
Q 003230 679 NGQFVPGNNFSYDK--CRRRFDLGDAD---------YLRY-----------------------RGMQEFDRAMQHLEEKY 724 (837)
Q Consensus 679 ~~~~~~gn~~s~~~--~r~~~~w~~~~---------~~~~-----------------------~~l~~f~r~Li~LR~~~ 724 (837)
..+||+. .-++++|.... ..++ ..+.+++|.||+||+++
T Consensus 782 -------d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~ 854 (970)
T PLN02877 782 -------DRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSS 854 (970)
T ss_pred -------CCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 2334432 12355565411 0111 46688999999999999
Q ss_pred cCCCCCc-----EEEEeecC----CCcEEEEEc-----------------CcEEEEEECCC
Q 003230 725 GFMTSEH-----QYVSRKDE----GDRVIVFER-----------------GNLVFVFNFHW 759 (837)
Q Consensus 725 ~~L~~g~-----~~i~~~~~----~~~Vlaf~R-----------------~~llvv~Nf~~ 759 (837)
|+++-+. ..+.+.+. .++||+|.- +.++||+|-++
T Consensus 855 plFrl~t~~~I~~~v~F~~~g~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~ 915 (970)
T PLN02877 855 PLFRLRTANAIQERVRFHNTGPSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARP 915 (970)
T ss_pred cccCCCCHHHHHhhcEEeccCCCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCC
Confidence 9986331 12222222 347999864 23899999885
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.5e-61 Score=602.67 Aligned_cols=478 Identities=18% Similarity=0.269 Sum_probs=333.7
Q ss_pred cccCCcEEeCCcEEEEEeCCCcCeEEEEeecCCCCCC---ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC
Q 003230 193 YEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 269 (837)
Q Consensus 193 y~~lG~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~~~---~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~ 269 (837)
..+|||++.++||+|+||||+|++|.|+. |+.|... ..+|.+..+|||+++|++... |..|+|+++++.
T Consensus 13 ~~plGA~~~~~gv~F~v~ap~A~~V~L~l-f~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~-------g~~Ygyrv~g~~ 84 (1221)
T PRK14510 13 REPLGAVPDGGGVNLALFSGAAERVEFCL-FDLWGVREEARIKLPGRTGDVWHGFIVGVGP-------GARYGNRQEGPG 84 (1221)
T ss_pred CCCCceEEECCeEEEEEECCCCCEEEEEE-EECCCCCeeEEEECCCCcCCEEEEEEccCCC-------CcEEEEEeccCC
Confidence 35899999999999999999999999986 8888543 357777788999999997544 568999998765
Q ss_pred Cc---------cccCCccceecccCCCC--CCC------------CcEEeCCCc--cccccccCCCC-CC-CCCceEEEe
Q 003230 270 GI---------KDSIPAWIKFSVQAPGE--IPY------------NGIYYDPPE--EEKYVFQHPQP-KK-PKSLRIYEA 322 (837)
Q Consensus 270 ~~---------~~~~~~~~~~~~~~~~~--~~~------------~~~~~d~~~--~~~~~~~~~~~-~~-~~~~~IYE~ 322 (837)
+. ...++||++.......- ..| .+.+.+|.. ..+|.|....+ .. ..+.+|||+
T Consensus 85 ~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~ 164 (1221)
T PRK14510 85 GPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEM 164 (1221)
T ss_pred CcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEE
Confidence 32 24678998776542110 000 112222210 12578875543 33 367999999
Q ss_pred ecCCCCCC------CCCCCHHhhHh-hhhhHHHHcCCCEEEEcCcccCCC---------CCCCCCccccccCCCCCCC--
Q 003230 323 HVGMSSTE------PIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSY---------YASFGYHVTNFFAPSSRCG-- 384 (837)
Q Consensus 323 hv~~f~~~------~~~Gt~~~~~~-~~LdyLk~LGvt~I~LmPi~e~~~---------~~s~GY~v~~y~a~~~~~G-- 384 (837)
||+.|+.. +..|+|.++.+ ++|+|||+||||+||||||++++. .++|||++.|||+|+++||
T Consensus 165 hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~ 244 (1221)
T PRK14510 165 NVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPG 244 (1221)
T ss_pred ccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccC
Confidence 99999852 23488888872 478999999999999999998754 2469999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccc-cCCCCC-CCCccccCC---CCCcccCCC-CCCCCCCHHHHHHH
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGT-DGHYFHSGS---RGYHWMWDS-RLFNYGSWEVLRFL 458 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~-~~fdg~-~~~yf~~~~---~g~~~~w~~-~~ln~~~~eV~~~l 458 (837)
+.+|||+||++||++||+||||+|+||++.++..+. ..+.+. ...||+... ..+...|+. ..+|+++|+|+++|
T Consensus 245 ~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i 324 (1221)
T PRK14510 245 GEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLP 324 (1221)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHH
Confidence 999999999999999999999999999998754331 123332 234555331 223344554 46899999999999
Q ss_pred HHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEE-----EEec
Q 003230 459 LSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS-----IGED 533 (837)
Q Consensus 459 ~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~-----iaE~ 533 (837)
+++++||++ |||||||||++.+|... ...||+.++..++++.|+.++ |||.
T Consensus 325 ~d~lr~Wv~-~gVDGfRfDla~~l~r~-----------------------~~~f~~~~~~~l~ai~~d~~l~~~~ligE~ 380 (1221)
T PRK14510 325 MDVLRSWAK-RGVDGFRLDLADELARE-----------------------PDGFIDEFRQFLKAMDQDPVLRRLKMIAEV 380 (1221)
T ss_pred HHHHHHHHH-hCCCEEEEechhhhccC-----------------------ccchHHHHHHHHHHhCCCcCcccCcEEEec
Confidence 999999999 99999999999887321 234889999999999999887 9999
Q ss_pred CCCCCcceeccccCCcccc---hhhhhhHHHHHHHHHhhcchhhhhhhhHHhhcc--------CcccccceecccCcccc
Q 003230 534 VSGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWLEKCVAYAESHDQA 602 (837)
Q Consensus 534 ~~~~p~~~~~~~~gglgfD---~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~~--------~~~~~~~v~ylenHD~~ 602 (837)
|...+.. +..+. |+ ..+|..+.+.++.++++... ....+...+.. .+.+..+|||++|||+.
T Consensus 381 Wd~~~~~---~~~g~--f~~~~~~~N~~frd~vr~f~~g~~~--~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~ 453 (1221)
T PRK14510 381 WDDGLGG---YQYGK--FPQYWGEWNDPLRDIMRRFWLGDIG--MAGELATRLAGSADIFPHRRRNFSRSINFITAHDGF 453 (1221)
T ss_pred ccCCCCc---cccCC--CCcceeeeccHHHHHHHHHhcCCCc--hHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCch
Confidence 9653221 12221 22 22455555666666654311 11222222211 22345689999999999
Q ss_pred cccccchhhhcc---Chh---------HHHhhh--cCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCC
Q 003230 603 LVGDKTIAFWLM---DKD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWI 668 (837)
Q Consensus 603 r~g~~~~~~~~~---~~~---------~~~~~~--~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~ 668 (837)
|+.+..-..... +.+ ..+... +.+....+.....+++|++.+++|+++|+|+| |||||+|++.
T Consensus 454 rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~I-y~GdE~g~tq-- 530 (1221)
T PRK14510 454 TLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPML-YYGDEAGRSQ-- 530 (1221)
T ss_pred HHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEE-ecchhccccc--
Confidence 986532100000 000 000000 00111111223456778899999999999877 9999999875
Q ss_pred CCCCCCCCCCCCCcCCCCCCCC--cccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCc
Q 003230 669 DFPRGDQRLPNGQFVPGNNFSY--DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH 731 (837)
Q Consensus 669 d~p~~~~~~~~~~~~~gn~~s~--~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~ 731 (837)
.||+++| +.+|+.++|... .+.|++|+|+||+|||++|+|+.+.
T Consensus 531 ---------------~Gn~n~y~~~~~r~~~~W~~~----~~~l~~f~k~Li~lRk~~~~L~~g~ 576 (1221)
T PRK14510 531 ---------------NGNNNGYAQDNNRGTYPWGNE----DEELLSFFRRLIKLRREYGVLRQGE 576 (1221)
T ss_pred ---------------CCCCCCCCCCCccccCCcccc----cHHHHHHHHHHHHHHHhChhhccCc
Confidence 2566665 567889999764 3589999999999999999997764
No 20
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=4.9e-57 Score=532.66 Aligned_cols=462 Identities=18% Similarity=0.223 Sum_probs=307.7
Q ss_pred eCCcEEEEEeCCC---cCeEEEEeecCCCCCCccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccc
Q 003230 201 SDTGITYREWAPG---AKSASLIGDFNNWNPNADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKD 273 (837)
Q Consensus 201 ~~~gv~FrvWAP~---A~~V~LvgDFN~w~~~~~~m~~~----~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~~~~ 273 (837)
..+.+++|+..+. .++|.|.....+. ....+|.+. ....|++.||.... ..-..|.|++...++..
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~-~~~~~m~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~F~l~~~~~~~- 89 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNE-EYLLPMEKQRSQPQVTAWRASLPLNSG-----QPRRRYSFKLLWHDRQR- 89 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCC-EEEEEeEEeecCCCceEEEEEEEcCCC-----CceEEEEEEEEeCCEEE-
Confidence 4556888888763 4688887643332 234578753 23579999974311 11247888886543221
Q ss_pred cCCccceecccCCCCCCCCcEEeCCCcccccccc--CCCCCCCCCceEEEeecCCCCCCCC-------------------
Q 003230 274 SIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQ--HPQPKKPKSLRIYEAHVGMSSTEPI------------------- 332 (837)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~IYE~hv~~f~~~~~------------------- 332 (837)
|. ...+.. . ..++....|.+. ...|.+-++.|||||++..|...+.
T Consensus 90 ----~~----~~~g~~----~-~~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~ 156 (598)
T PRK10785 90 ----WF----TPQGFS----R-RPPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEII 156 (598)
T ss_pred ----EE----cCCcee----e-ccCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCccc
Confidence 10 000100 0 001000112221 1234445899999999988742100
Q ss_pred ------------------CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHH
Q 003230 333 ------------------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLID 394 (837)
Q Consensus 333 ------------------~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~ 394 (837)
.|+|+||+ ++|||||+||||+|||+||++++. +|||+++||++|+|+|||.++|++||+
T Consensus 157 ~~~w~~~~~~~~~~~~f~GGDl~GI~-~kLdYL~~LGv~~I~L~Pif~s~s--~hgYd~~Dy~~iDp~~Gt~~df~~Lv~ 233 (598)
T PRK10785 157 LRDWDEPVTAQAGGSTFYGGDLDGIS-EKLPYLKKLGVTALYLNPIFTAPS--VHKYDTEDYRHVDPQLGGDAALLRLRH 233 (598)
T ss_pred ccCcCCCcccccccccccCcCHHHHH-HHHHHHHHcCCCEEEeCCcccCCC--CCCcCcccccccCcccCCHHHHHHHHH
Confidence 28999999 699999999999999999999875 799999999999999999999999999
Q ss_pred HHHHcCCEEEEeeccccccCCCcccccC-------CCCCC---CCccccCCCCCcccC----CCCCCCCCCHHHHHHHHH
Q 003230 395 KAHELGLLVLMDIVHSHASNNVLDGLNM-------FDGTD---GHYFHSGSRGYHWMW----DSRLFNYGSWEVLRFLLS 460 (837)
Q Consensus 395 ~aH~~GI~VIlDvV~NH~s~~~~~~~~~-------fdg~~---~~yf~~~~~g~~~~w----~~~~ln~~~~eV~~~l~~ 460 (837)
+||++||+||||+|+||++.+|++.... +.... ..||.....+....| +.++||++||+|+++|++
T Consensus 234 ~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~ 313 (598)
T PRK10785 234 ATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYR 313 (598)
T ss_pred HHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHh
Confidence 9999999999999999999988532211 11111 124443333322233 248999999999999995
Q ss_pred ----HHHHHHHH-cCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCC
Q 003230 461 ----NARWWLEE-YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (837)
Q Consensus 461 ----~l~~Wl~e-~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~ 535 (837)
+++||+++ |||||||+|+|..+... + .....++||+++++.+++.+|++++|||.|.
T Consensus 314 ~~~~v~~~Wl~~~~giDG~RlDva~~v~~~--~----------------~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~ 375 (598)
T PRK10785 314 GEDSIVRHWLKAPYNIDGWRLDVVHMLGEG--G----------------GARNNLQHVAGITQAAKEENPEAYVLGEHFG 375 (598)
T ss_pred hhhHHHHHhhcCCCCCcEEEEecHhHhccc--c----------------CccccHHHHHHHHHHHHhhCCCeEEEEeccC
Confidence 89999997 99999999999765311 0 0112457999999999999999999999986
Q ss_pred CCCcceeccccCCcccchhhhh-hHHHHHHHHHhhcchhh-----hhhhhHHhhc----cCccc--ccceecccCccccc
Q 003230 536 GMPTFCIPVQDGGVGFDYRLQM-AIADKWIELLKKRDEDW-----KMGAIVHTMT----NRRWL--EKCVAYAESHDQAL 603 (837)
Q Consensus 536 ~~p~~~~~~~~gglgfD~~~~~-~~~d~~~~~lk~~~~~~-----~~~~l~~~l~----~~~~~--~~~v~ylenHD~~r 603 (837)
... .+..+. ++|..+++ .+...+..++......+ ....+...+. ...+. ...+||++|||+.|
T Consensus 376 ~~~----~~l~~~-~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R 450 (598)
T PRK10785 376 DAR----QWLQAD-VEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTAR 450 (598)
T ss_pred Chh----hhccCc-cccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccch
Confidence 422 121111 12222221 22222333333211000 1111111111 11111 12468999999999
Q ss_pred ccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcC
Q 003230 604 VGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFV 683 (837)
Q Consensus 604 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~ 683 (837)
+... ++ ...+++|+|.+++||+||+|+| |||+|+|+.+..| |
T Consensus 451 ~~~~------~~------------------~~~~~~kla~~ll~t~pGiP~I-YYGdE~G~~g~~d-p------------ 492 (598)
T PRK10785 451 FKTL------LG------------------GDKARMPLALVWLFTWPGVPCI-YYGDEVGLDGGND-P------------ 492 (598)
T ss_pred hhhh------hC------------------CCHHHHHHHHHHHHhCCCCcEE-EeeeeccccCCCC-C------------
Confidence 7532 11 1135789999999999999988 9999999976322 2
Q ss_pred CCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc----CcEEEEEECC
Q 003230 684 PGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFH 758 (837)
Q Consensus 684 ~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R----~~llvv~Nf~ 758 (837)
.+|++|+|.... ..++|++|+|+|++||+++++|+.|....... +++|+||.| +.++||+|++
T Consensus 493 --------~~R~~m~W~~~~--~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~--~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 493 --------FCRKPFPWDEAK--QDGALLALYQRMIALRKKSQALRRGGCQVLYA--EGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred --------CccCCcCCCccc--CchHHHHHHHHHHHHHhhCcccccCcEEEEEe--CCCEEEEEEECCCCEEEEEEECC
Confidence 368999997653 45799999999999999999999886444332 356999999 5799999998
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1.1e-56 Score=525.40 Aligned_cols=450 Identities=19% Similarity=0.266 Sum_probs=287.1
Q ss_pred CCCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHH
Q 003230 314 PKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKS 391 (837)
Q Consensus 314 ~~~~~IYE~hv~~f~~~--~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~ 391 (837)
.++++|||++|++|.+. ++.|+|+|++ ++||||++||||+||||||++++. .+|||++.||++|+|+|||.+|||+
T Consensus 3 ~~~~viYqi~~~~f~d~~~~~~Gdl~gi~-~~Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~~Gt~~df~~ 80 (539)
T TIGR02456 3 YKDAVFYEVHVRSFFDSNGDGIGDFPGLT-SKLDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPEFGTIDDFKD 80 (539)
T ss_pred cccceEEEEehhHhhcCCCCCccCHHHHH-HhHHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChhhCCHHHHHH
Confidence 36899999999999754 4579999999 699999999999999999999875 3699999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeeccccccCCCcccccC---CCCCCCCccccCC---------------CCCcccC-----------
Q 003230 392 LIDKAHELGLLVLMDIVHSHASNNVLDGLNM---FDGTDGHYFHSGS---------------RGYHWMW----------- 442 (837)
Q Consensus 392 LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~---fdg~~~~yf~~~~---------------~g~~~~w----------- 442 (837)
||++||++||+||||+|+||++.++++.... .+.....||.... .+..|.|
T Consensus 81 Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 160 (539)
T TIGR02456 81 FVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHR 160 (539)
T ss_pred HHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEec
Confidence 9999999999999999999999987533211 1111122332100 0111211
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccCh-hHHHHHHHHHH
Q 003230 443 ---DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVND 518 (837)
Q Consensus 443 ---~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~~~~fl~~~~~ 518 (837)
+.++||+.||+||++|++++++|++ +||||||||++++|.... | +.+.+. +..+||+++++
T Consensus 161 f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~-~-------------~~~~~~p~~~~f~~~~~~ 225 (539)
T TIGR02456 161 FFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYERE-G-------------TSCENLPETHEFLKRLRK 225 (539)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccC-C-------------CccCCCchHHHHHHHHHH
Confidence 2479999999999999999999998 899999999999885321 1 112232 35789999999
Q ss_pred HhhccCCCeEEEEecCCCCCcceeccc-c-CCcccchhhhhhHHHHHHHHHhhcchhhhhhhhHHhhc---cCcccccce
Q 003230 519 MIHGLYPEAVSIGEDVSGMPTFCIPVQ-D-GGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT---NRRWLEKCV 593 (837)
Q Consensus 519 ~v~~~~P~~~~iaE~~~~~p~~~~~~~-~-gglgfD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~---~~~~~~~~v 593 (837)
.+++.+|++++|||.+. ++..+..+. . +..+++..++..+.......+... ....+...+. ...-....+
T Consensus 226 ~v~~~~p~~~~iaE~~~-~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~----~~~~l~~~l~~~~~~~~~~~~~ 300 (539)
T TIGR02456 226 MVDREYPGRMLLAEANQ-WPEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRRE----DRSPIIDILKETPDIPDSCQWC 300 (539)
T ss_pred HHHHhCCCeEEEEEeCC-CHHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccC----CHHHHHHHHHHhhhccCCCcee
Confidence 99999999999999853 222222221 1 111233333333221111111111 0111111111 001112235
Q ss_pred ecccCcccccccccch-------hhhccChhHHHhhhc-CCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCC
Q 003230 594 AYAESHDQALVGDKTI-------AFWLMDKDMYDFMAL-DRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHP 665 (837)
Q Consensus 594 ~ylenHD~~r~g~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~ 665 (837)
+|++|||+.++.--+- +.+..+......... .+..+ ......+++|++++++||+||+|+| |||+|+||.
T Consensus 301 ~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s-~~~~~~~~~kla~~~l~tlpG~P~I-YYG~EiGm~ 378 (539)
T TIGR02456 301 IFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAP-LLDNDRRRIELLTALLLSLPGSPIL-YYGDEIGMG 378 (539)
T ss_pred eecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhh-cccccHHHHHHHHHHHHhCCCceEE-EechhhcCc
Confidence 7999999976421000 000000000000000 00000 0111245789999999999999887 999999996
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccc--------------------------------cccchHHHHH
Q 003230 666 EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD--------------------------------YLRYRGMQEF 713 (837)
Q Consensus 666 e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~--------------------------------~~~~~~l~~f 713 (837)
+-.. ..+.+.+|.+|+|.... .....++++|
T Consensus 379 ~~~~-----------------~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~ 441 (539)
T TIGR02456 379 DNIW-----------------LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHW 441 (539)
T ss_pred CCCc-----------------cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHH
Confidence 4110 01123355566665321 1234689999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc----CcEEEEEECCCCCcccceEEcccC-Cc-cEEEEEeCCCCCc
Q 003230 714 DRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLK-PG-KYKIVLDSDDPLF 787 (837)
Q Consensus 714 ~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R----~~llvv~Nf~~~~~~~~~~l~~~~-~g-~~~~vlnsd~~~~ 787 (837)
||+||+||+++++|..|...... ..+++|++|.| +.++||+|++. + .....|.++. .| .+.++++++..
T Consensus 442 yr~Li~lRk~~~aL~~G~~~~l~-~~~~~v~~f~R~~~~~~vlVv~N~s~-~-~~~v~l~~~~~~~~~~~dl~~~~~~-- 516 (539)
T TIGR02456 442 TRRVLHVRKAHPAFGRGSLTFLP-TGNRRVLAFLREYEGERVLCVFNFSR-N-PQAVELDLSEFAGRVPVELIGGAPF-- 516 (539)
T ss_pred HHHHHHHHhcCcccccCceEEEe-cCCCCEEEEEEEcCCcEEEEEEeCCC-C-CEEeeccccccccCcceecccCCcc--
Confidence 99999999999999888644332 22456999999 57999999994 2 3345554332 12 34555432210
Q ss_pred CCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEE
Q 003230 788 GGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 827 (837)
Q Consensus 788 gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~ 827 (837)
.. ...+.+.|+|||++++||..
T Consensus 517 ------------~~------~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 517 ------------PP------VGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred ------------cc------ccCCcceEEECCceEEEEEe
Confidence 00 00112789999999999974
No 22
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=3.6e-55 Score=511.38 Aligned_cols=452 Identities=17% Similarity=0.241 Sum_probs=295.6
Q ss_pred CCCCCceEEEeecCCCCC--CCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHH
Q 003230 312 KKPKSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDL 389 (837)
Q Consensus 312 ~~~~~~~IYE~hv~~f~~--~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edf 389 (837)
.+.++.+|||+++++|.+ .++.|+|+|++ ++||||++||||+||||||++++. ..|||++.||++|+++|||.+||
T Consensus 6 ~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~-~~ldyl~~lGv~~i~l~P~~~~~~-~~~gY~~~d~~~id~~~Gt~~d~ 83 (551)
T PRK10933 6 HWWQNGVIYQIYPKSFQDTTGSGTGDLRGVT-QRLDYLQKLGVDAIWLTPFYVSPQ-VDNGYDVANYTAIDPTYGTLDDF 83 (551)
T ss_pred hhhhcCeEEEEEchHhhcCCCCCCcCHHHHH-HhhHHHHhCCCCEEEECCCCCCCC-CCCCCCcccCCCcCcccCCHHHH
Confidence 345789999999999965 35689999999 699999999999999999998875 35899999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCC--Cccc--c------------CCCCCcccCC----------
Q 003230 390 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG--HYFH--S------------GSRGYHWMWD---------- 443 (837)
Q Consensus 390 k~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~--~yf~--~------------~~~g~~~~w~---------- 443 (837)
++||++||++||+||||+|+||++.+|++.....+...+ .||. . ...+..|.|+
T Consensus 84 ~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 163 (551)
T PRK10933 84 DELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHL 163 (551)
T ss_pred HHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeec
Confidence 999999999999999999999999988543222111111 1221 0 0011222232
Q ss_pred ----CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHH
Q 003230 444 ----SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 519 (837)
Q Consensus 444 ----~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~ 519 (837)
.++||+.||+|+++|+++++||++ +||||||||+|++|... .+++.........++. ...+..+||+++++.
T Consensus 164 f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 239 (551)
T PRK10933 164 FAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKD-QDFPDDLDGDGRRFYT--DGPRAHEFLQEMNRD 239 (551)
T ss_pred ccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcC-CCCCCCcccccccccC--CChHHHHHHHHHHHH
Confidence 479999999999999999999996 99999999999998643 1221111011111111 124567899999876
Q ss_pred hhccCCCeEEEEecCCCCCcceeccc--cC---CcccchhhhhhHHHHHHHHHhhc---chhhhhhhhHH-------hhc
Q 003230 520 IHGLYPEAVSIGEDVSGMPTFCIPVQ--DG---GVGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVH-------TMT 584 (837)
Q Consensus 520 v~~~~P~~~~iaE~~~~~p~~~~~~~--~g---glgfD~~~~~~~~d~~~~~lk~~---~~~~~~~~l~~-------~l~ 584 (837)
+.. .+++++|||.|...+..+..+. .+ .+.|+|.. . ...++... ...|....+.. .+.
T Consensus 240 ~~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (551)
T PRK10933 240 VFT-PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHH--L----KVDYPNGEKWTLAKPDFVALKTLFRHWQQGMH 312 (551)
T ss_pred hhc-ccCcEEEEeecCCCHHHHHHhhcccCCeeeeEecHHH--h----hhhhccCCcccccccCHHHHHHHHHHHHHhhc
Confidence 643 3478999999865443333332 11 13344431 1 11111110 00111111111 111
Q ss_pred cCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCC
Q 003230 585 NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH 664 (837)
Q Consensus 585 ~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~ 664 (837)
...|. ..|++|||++|+..+. +.+. ....+.+|++.+++||+||+|+| |||+|+||
T Consensus 313 ~~~~~---~~fl~NHD~~R~~sr~----g~~~----------------~~~~~~aklla~ll~tlpG~P~I-YyGeEiGm 368 (551)
T PRK10933 313 NVAWN---ALFWCNHDQPRIVSRF----GDEG----------------EYRVPAAKMLAMVLHGMQGTPYI-YQGEEIGM 368 (551)
T ss_pred ccCee---ccccCCCCcccHHHHc----CCch----------------hHHHHHHHHHHHHHHhCCCceEE-EeecccCC
Confidence 22232 5789999999875331 1110 11234578888999999999988 99999999
Q ss_pred CCCCCCCCCCC-CCC-----------CCC-----cCCCCCCCCcccCccccCCcccc-----------------------
Q 003230 665 PEWIDFPRGDQ-RLP-----------NGQ-----FVPGNNFSYDKCRRRFDLGDADY----------------------- 704 (837)
Q Consensus 665 ~e~~d~p~~~~-~~~-----------~~~-----~~~gn~~s~~~~r~~~~w~~~~~----------------------- 704 (837)
.+. .+++.++ +.+ .+. ...-+..+++.||.+|+|.....
T Consensus 369 ~~~-~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~ 447 (551)
T PRK10933 369 TNP-HFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEA 447 (551)
T ss_pred CCC-CCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHH
Confidence 762 1111000 000 000 00123357888999999987542
Q ss_pred --ccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc----CcEEEEEECCCCCcccceEEcccCCccEEE
Q 003230 705 --LRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKI 778 (837)
Q Consensus 705 --~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R----~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~ 778 (837)
....++++|||+||+||+++|+|..|..... ...+++|++|.| +.++||+|++. ....+.++ ...+.|+.
T Consensus 448 Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~-~~~~~~v~af~R~~~~~~~lvv~N~s~--~~~~~~~~-~~~~~~~~ 523 (551)
T PRK10933 448 ALADEDSVFYTYQKLIALRKQEPVLTWGDYQDL-LPNHPSLWCYRREWQGQTLLVIANLSR--EPQPWQPG-QMRGNWQL 523 (551)
T ss_pred HhcCcccHHHHHHHHHHHhhcChhhccceeEEe-ccCCCcEEEEEEEcCCcEEEEEEECCC--CCeeeecC-cccCCceE
Confidence 1236899999999999999999988854332 223457999999 58999999993 22334443 22467888
Q ss_pred EEeCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEE
Q 003230 779 VLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 827 (837)
Q Consensus 779 vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~ 827 (837)
+|++..... .. ...++|||.++.|+..
T Consensus 524 ~l~~~~~~~--------------------~~--~~~~~L~p~~~~~~~~ 550 (551)
T PRK10933 524 LMHNYEEAS--------------------PQ--PCAMTLRPFEAVWWLQ 550 (551)
T ss_pred EeecCcccc--------------------CC--CCcEEECCCeEEEEEe
Confidence 876421100 00 0348899999999864
No 23
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-54 Score=506.80 Aligned_cols=551 Identities=21% Similarity=0.312 Sum_probs=354.8
Q ss_pred cccCCcEE---eCCcEEEEEeCCCcCeEEEEeecCCC--CCC--ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEE
Q 003230 193 YEKFGFIR---SDTGITYREWAPGAKSASLIGDFNNW--NPN--ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHM 265 (837)
Q Consensus 193 y~~lG~~~---~~~gv~FrvWAP~A~~V~LvgDFN~w--~~~--~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v 265 (837)
..++|+++ ...|+.|.+|+.+|++|.|+. |..- ... .+++....+.+|++.+|+... |..|.|++
T Consensus 17 ~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l-~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~-------g~~y~yr~ 88 (697)
T COG1523 17 PYPLGATVIDIDGDGVNFALFSSHAERVELCL-FDEAGNTEEGRLYPYDGELGAIWHLWLPGAKP-------GQVYGYRV 88 (697)
T ss_pred cccccceeeeccCcceEEeeeccccceEEEEe-cCcccccccccccccCCccccEEEEEcCCCce-------eeEEEEec
Confidence 45899997 458999999999999999995 3322 111 156766667799999998654 66899998
Q ss_pred eCCCCc---------cccCCccceecccCCCC------------------------C-CCCcEEeCCCccccccccCCC-
Q 003230 266 DTPSGI---------KDSIPAWIKFSVQAPGE------------------------I-PYNGIYYDPPEEEKYVFQHPQ- 310 (837)
Q Consensus 266 ~~~~~~---------~~~~~~~~~~~~~~~~~------------------------~-~~~~~~~d~~~~~~~~~~~~~- 310 (837)
.++... +.-++||++........ . ..++++.++. +.|+.++
T Consensus 89 ~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~----~~w~~~~~ 164 (697)
T COG1523 89 HGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPL----FDWENDKP 164 (697)
T ss_pred CCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccc----cccccCCC
Confidence 775321 23467887654422210 0 1245555542 7887654
Q ss_pred CCCC-CCceEEEeecCCCC-CCC-----CCCCHHhhHhhh--hhHHHHcCCCEEEEcCcccCC---------CCCCCCCc
Q 003230 311 PKKP-KSLRIYEAHVGMSS-TEP-----IINTYANFRDDV--LPRIKRLGYNAVQIMAVQEHS---------YYASFGYH 372 (837)
Q Consensus 311 ~~~~-~~~~IYE~hv~~f~-~~~-----~~Gt~~~~~~~~--LdyLk~LGvt~I~LmPi~e~~---------~~~s~GY~ 372 (837)
|..| ++++|||+|||+|| .++ ..|||.+++ +. |+|||+||||||+||||+++. ...+|||+
T Consensus 165 ~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~-~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYd 243 (697)
T COG1523 165 PRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLA-EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYD 243 (697)
T ss_pred CCCCccceEEEEeeecccccCCCCCchhhccceehhc-cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCC
Confidence 3334 78999999999998 443 459999999 46 999999999999999999863 23579999
Q ss_pred cccccCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeccccccCCC-cccccCCCCCCCCcc-ccCCCCCc--cc
Q 003230 373 VTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNV-LDGLNMFDGTDGHYF-HSGSRGYH--WM 441 (837)
Q Consensus 373 v~~y~a~~~~~Gt-------~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~-~~~~~~fdg~~~~yf-~~~~~g~~--~~ 441 (837)
|.+||+|+++|.+ ..|||.||+++|++||+||||||+|||+... ......|+|.++.|| ..++.|+. +.
T Consensus 244 P~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~T 323 (697)
T COG1523 244 PLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGT 323 (697)
T ss_pred cccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCC
Confidence 9999999999986 4599999999999999999999999998642 233457899888754 44444443 33
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhh
Q 003230 442 WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIH 521 (837)
Q Consensus 442 w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~ 521 (837)
-+...+|.++|+||++|+|+|+||++||||||||||.|+.+.....+ | +..+ .++..+. -.
T Consensus 324 GcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~----~------------~~~~-~l~~~~~--~~ 384 (697)
T COG1523 324 GCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETML----F------------DINA-NLFLAGE--GD 384 (697)
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccc----c------------ccCc-chhhhcc--CC
Confidence 35579999999999999999999999999999999999876433110 0 0000 0111110 01
Q ss_pred ccCCCeEEEEecCCCCCcceeccccCCcccc--hh---hhhhHHHHHHHHHhhcchhhhhhhhHHhhcc--------Ccc
Q 003230 522 GLYPEAVSIGEDVSGMPTFCIPVQDGGVGFD--YR---LQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRW 588 (837)
Q Consensus 522 ~~~P~~~~iaE~~~~~p~~~~~~~~gglgfD--~~---~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~~--------~~~ 588 (837)
...-...+|||.|.-.+. -++-|. |. ++ ++-.+.|..+.++.+... ..+.+...+.. .+-
T Consensus 385 p~l~~~kliAepwD~g~~---gyqvG~--Fpd~~~~aewng~~rD~vr~F~~G~~~--~~~~~a~rl~gS~d~~~~~~~~ 457 (697)
T COG1523 385 PVLSGVKLIAEPWDIGPG---GYQVGN--FPDSPRWAEWNGRFRDDVRRFWRGDAG--LVGEFAKRLAGSSDLYKRNGRR 457 (697)
T ss_pred ccccCceeeecchhhcCC---Cccccc--CCCccchhhhCCcccccccceeeCCCc--cHHHHHHHhhcCcchhhccCCC
Confidence 112234588888854331 122222 22 22 233333333444443211 11222222221 233
Q ss_pred cccceecccCcccccccccchhhhcc---ChhHH-----Hhhh-----cCCCCCcchhhHHHHHHH-HHHHHHhCCCCce
Q 003230 589 LEKCVAYAESHDQALVGDKTIAFWLM---DKDMY-----DFMA-----LDRPSTPRIDRGIALHKM-IRLVTMGLGGEAY 654 (837)
Q Consensus 589 ~~~~v~ylenHD~~r~g~~~~~~~~~---~~~~~-----~~~~-----~~~~~~~~~~~g~al~kl-a~~l~ltlpG~p~ 654 (837)
+.++|||+.+||.-++.|...-...- +.+.. ..++ ....+.|.+..+.++.+. ..+.++...|+|.
T Consensus 458 p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pm 537 (697)
T COG1523 458 PSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPM 537 (697)
T ss_pred ccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCcc
Confidence 56889999999999876532110000 11100 0011 112233444443333333 3344677789975
Q ss_pred EeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcc--cCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCC-c
Q 003230 655 LNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSE-H 731 (837)
Q Consensus 655 L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g-~ 731 (837)
+ -+|+|+|+..+ ||+++|+. ..+.++|.. ..++.+.+|.+.||+||+++++++.. +
T Consensus 538 l-~~gDe~~rtq~-----------------gnnNsYcqdn~inwlDW~~---~~~~~l~~f~~~lIaLRk~~~af~~~~f 596 (697)
T COG1523 538 L-LAGDEFGRTQY-----------------GNNNAYCQDNEINWLDWST---EANNDLVEFTKGLIALRKAHPAFRRRSF 596 (697)
T ss_pred c-ccccccccccc-----------------cccccccCCcccceeccCc---cccHHHHHHHHHHHHHhhhcchhcccch
Confidence 5 99999999764 88999865 466889982 46789999999999999999988652 1
Q ss_pred E----------EE----------EeecCCCcEEEEEc-C---cEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCc
Q 003230 732 Q----------YV----------SRKDEGDRVIVFER-G---NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLF 787 (837)
Q Consensus 732 ~----------~i----------~~~~~~~~Vlaf~R-~---~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~ 787 (837)
. |+ .+.......+++.. + .++|++|-.. ....++++... ++|..++++....
T Consensus 597 ~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~~~~~lv~~N~~~--~~~~~~lp~~~-~~~~~~~~~~~~~- 672 (697)
T COG1523 597 FEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGDKERLLVLINATA--EPVEFELPEDE-GKWAGLVDTSTPP- 672 (697)
T ss_pred hhccCCCcccceeccCCeeechhcccCCCCceEEEEecCCCccEEEEecCCc--cccceeccccc-CcceeeecccCCC-
Confidence 1 11 01112234555544 3 7999999663 33456665443 6677776643321
Q ss_pred CCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEc
Q 003230 788 GGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 788 gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~ 828 (837)
+. .. ..+.++++|+.||...
T Consensus 673 -~~----------------~~----~~~~~~~~s~~vl~~~ 692 (697)
T COG1523 673 -GF----------------DI----REVSLPGRSVLVLTRR 692 (697)
T ss_pred -Cc----------------cc----ceeecCCcEEEEEeec
Confidence 00 00 1588999999998743
No 24
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=6.6e-55 Score=509.72 Aligned_cols=456 Identities=16% Similarity=0.204 Sum_probs=292.6
Q ss_pred CCCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHH
Q 003230 314 PKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKS 391 (837)
Q Consensus 314 ~~~~~IYE~hv~~f~~~--~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~ 391 (837)
.++.+|||+++++|.+. ++.|+|+|++ ++||||++||||+|||+||++++. ..+||+++||++|+|+|||.++|++
T Consensus 2 ~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~-~~l~yl~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~ 79 (543)
T TIGR02403 2 WQKKVIYQIYPKSFYDSTGDGTGDLRGII-EKLDYLKKLGVDYIWLNPFYVSPQ-KDNGYDVSDYYAINPLFGTMADFEE 79 (543)
T ss_pred cccCEEEEEEhHHHhcCCCCCccCHHHHH-HhHHHHHHcCCCEEEECCcccCCC-CCCCCCccccCccCcccCCHHHHHH
Confidence 36789999999999753 4679999999 699999999999999999999876 3479999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeeccccccCCCcccccCC--CCCCCCccc-cCCC------------CCcccC--------------
Q 003230 392 LIDKAHELGLLVLMDIVHSHASNNVLDGLNMF--DGTDGHYFH-SGSR------------GYHWMW-------------- 442 (837)
Q Consensus 392 LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f--dg~~~~yf~-~~~~------------g~~~~w-------------- 442 (837)
||++||++||+||||+|+||++.+|.+..... ++....||. .+.. +..|.|
T Consensus 80 lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~ 159 (543)
T TIGR02403 80 LVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDK 159 (543)
T ss_pred HHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCC
Confidence 99999999999999999999999885432111 111112221 1000 111211
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhc
Q 003230 443 DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHG 522 (837)
Q Consensus 443 ~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~ 522 (837)
+.++||++||+|+++|+++++||++ +||||||||+|++|..... +...-... ...+ ........+||+++++.+++
T Consensus 160 ~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~-~~~~~~~~-~~~~-~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 160 TQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQF-FEDDEIGD-GRRF-YTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred cCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcc-cCCCCCCC-Cccc-cCCChHHHHHHHHHHHHhhc
Confidence 2479999999999999999999998 8999999999999853310 10000000 0000 01124567899999999988
Q ss_pred cCCCeEEEEecCCCCCcceecccc-CCcccchhhhhhHHHHHHHHHhhc---chhhhhhhhHHhhc----cCc-ccccce
Q 003230 523 LYPEAVSIGEDVSGMPTFCIPVQD-GGVGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVHTMT----NRR-WLEKCV 593 (837)
Q Consensus 523 ~~P~~~~iaE~~~~~p~~~~~~~~-gglgfD~~~~~~~~d~~~~~lk~~---~~~~~~~~l~~~l~----~~~-~~~~~v 593 (837)
.|++++|||.|...+..+..+.. .+-.+|..+++.. ....+.... ...+....+...+. ... .....+
T Consensus 236 -~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (543)
T TIGR02403 236 -DNDSVTVGEMSSTTIENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWNA 312 (543)
T ss_pred -cCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHHHHhccccCccee
Confidence 89999999999754443333322 1112333322211 111111110 00111111111110 000 111235
Q ss_pred ecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCC--CCC
Q 003230 594 AYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWI--DFP 671 (837)
Q Consensus 594 ~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~--d~p 671 (837)
+|++|||++|+..+. +. + . ....+.+|++.+++||+||+|+| |||+|+||.+.. ..+
T Consensus 313 ~fl~NHD~~R~~s~~------g~--------~-~-----~~~~~~~k~~a~ll~tlpG~P~I-YYGdEiGm~~~~~~~~~ 371 (543)
T TIGR02403 313 LFWNNHDQPRAVSRF------GD--------D-G-----EYRVESAKMLAAAIHLLRGTPYI-YQGEEIGMTNPKFTNIE 371 (543)
T ss_pred eecCCCChhhHHHhc------CC--------c-h-----hhHHHHHHHHHHHHHHCCCCeEE-EeccccCCCCCCCCCHH
Confidence 799999999875321 10 0 0 00123568888889999999988 999999997531 100
Q ss_pred CC-CC----C----CCCCCc-----CCCCCCCCcccCccccCCcccc-------------------------ccchHHHH
Q 003230 672 RG-DQ----R----LPNGQF-----VPGNNFSYDKCRRRFDLGDADY-------------------------LRYRGMQE 712 (837)
Q Consensus 672 ~~-~~----~----~~~~~~-----~~gn~~s~~~~r~~~~w~~~~~-------------------------~~~~~l~~ 712 (837)
.. |. . .+.+.. ..-+..+++.+|.+|+|..... ....++++
T Consensus 372 ~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~ 451 (543)
T TIGR02403 372 DYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFY 451 (543)
T ss_pred HhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHH
Confidence 00 00 0 000000 0113457788999999976421 12468999
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc----CcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcC
Q 003230 713 FDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFG 788 (837)
Q Consensus 713 f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R----~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~g 788 (837)
|||+||+||+++|+|..|...... ..+++|++|.| +.++||+|++. ....+.|+.. .+.++.++++.....
T Consensus 452 ~yr~Li~lRk~~~aL~~G~~~~~~-~~~~~v~a~~R~~~~~~~lVv~N~s~--~~~~~~l~~~-~~~~~~~~~~~~~~~- 526 (543)
T TIGR02403 452 FYQKLIALRKSEPVITDGDYQFLL-PDDPSVWAYTRTYKNQKLLVINNFYG--EEKTIELPLD-LLSGKILLSNYEEAE- 526 (543)
T ss_pred HHHHHHHHHhhcccccCccEEEee-cCCCcEEEEEEEcCCcEEEEEEECCC--CCeEeeCCcc-CcCceEEEecCCCcC-
Confidence 999999999999999888543322 23346999999 47999999994 2333444321 234566665422100
Q ss_pred CccccCCCcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003230 789 GYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 789 G~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~ 826 (837)
. ...++|||++++|+.
T Consensus 527 ------------------~----~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 527 ------------------K----DAKLELKPYEAIVLL 542 (543)
T ss_pred ------------------C----CCcEEECCceEEEEe
Confidence 0 044899999999985
No 25
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=4.4e-51 Score=481.49 Aligned_cols=368 Identities=18% Similarity=0.226 Sum_probs=248.5
Q ss_pred CCCCCCceEEEeecCCCCCCC------------C--------CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCC------
Q 003230 311 PKKPKSLRIYEAHVGMSSTEP------------I--------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHS------ 364 (837)
Q Consensus 311 ~~~~~~~~IYE~hv~~f~~~~------------~--------~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~------ 364 (837)
+...++.+||+|.+..|...+ + .|+|+||+ ++||||++||||+|||+||+++.
T Consensus 184 ~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~-~kLdyl~~LGv~aIwlsPi~~~~~~~~~~ 262 (683)
T PRK09505 184 PFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLT-EKLDYLQQLGVNALWISSPLEQIHGWVGG 262 (683)
T ss_pred ChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHH-HhhHHHHHcCCCEEEeCcccccccccccc
Confidence 444578999999998885221 1 28999999 69999999999999999999872
Q ss_pred -------CCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCccccc--CCC-----------
Q 003230 365 -------YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN--MFD----------- 424 (837)
Q Consensus 365 -------~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~--~fd----------- 424 (837)
.+++|||++.||+.|+++|||.+|||+||++||++||+||||+|+||++..+..... .|.
T Consensus 263 g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~ 342 (683)
T PRK09505 263 GTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKK 342 (683)
T ss_pred ccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcccccc
Confidence 357899999999999999999999999999999999999999999999953210000 000
Q ss_pred CC----------CCCccccC--------CCCCcccC-------------------------CCCCCCCC-----------
Q 003230 425 GT----------DGHYFHSG--------SRGYHWMW-------------------------DSRLFNYG----------- 450 (837)
Q Consensus 425 g~----------~~~yf~~~--------~~g~~~~w-------------------------~~~~ln~~----------- 450 (837)
+. .+.+|+.. ...+...| ..++||.+
T Consensus 343 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~ 422 (683)
T PRK09505 343 TLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFY 422 (683)
T ss_pred ccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhh
Confidence 00 00111110 00111111 12556664
Q ss_pred ------------CHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHH
Q 003230 451 ------------SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVND 518 (837)
Q Consensus 451 ------------~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~ 518 (837)
||+|+++|++++++|++++||||||+|+|++|. .+||++++.
T Consensus 423 ~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~--------------------------~~FW~~~~~ 476 (683)
T PRK09505 423 ANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVE--------------------------LPAWQQLKQ 476 (683)
T ss_pred hcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCC--------------------------HHHHHHHHH
Confidence 569999999999999999999999999999882 246666665
Q ss_pred Hh-------hccCC-------CeEEEEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHhhcchhhhhhhhHHhhc
Q 003230 519 MI-------HGLYP-------EAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT 584 (837)
Q Consensus 519 ~v-------~~~~P-------~~~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~ 584 (837)
.+ ++.+| ++++|||.|...+.. ..+... +||..+++.+.......+... ..+..++..+.
T Consensus 477 ~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~-~~y~~~--~fDsv~NF~~~~~~~~~~~~~---~~l~~~~~~~~ 550 (683)
T PRK09505 477 EASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMK-SDYYRH--GFDAMINFDYQEQAAKAVDCL---AQMDPTYQQMA 550 (683)
T ss_pred HHHHHHHHHHHhccccccccCCeEEEEEecCCchhh-HHHHhh--cCccccCchHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 55 33344 489999999654332 222222 244444333332222221100 01111221121
Q ss_pred cCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCC
Q 003230 585 NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH 664 (837)
Q Consensus 585 ~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~ 664 (837)
...-....++|++|||+.|+.+.. . ..+++|+|.+++|++||+|+| |||+|+||
T Consensus 551 ~~~~~~~~l~FLdNHDt~Rf~s~~------~-------------------~~~~~klAaall~tlpGiP~I-YYGdEiGm 604 (683)
T PRK09505 551 EKLQDFNVLSYLSSHDTRLFFEGG------Q-------------------SYAKQRRAAELLLLAPGAVQI-YYGDESAR 604 (683)
T ss_pred hhcCccceeecccCCChhhhhhhc------C-------------------chHHHHHHHHHHHhCCCCcEE-EechhhCc
Confidence 111112357899999999885321 0 014678899999999999988 99999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEE
Q 003230 665 PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVI 744 (837)
Q Consensus 665 ~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vl 744 (837)
..... + ......+|++|+|.+.. ....+|++|+|+|++||+++|+|+.|..... ..++++
T Consensus 605 ~gg~~---------------g-~DP~~~~R~~M~W~~~~-~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l---~~~~~~ 664 (683)
T PRK09505 605 PFGPT---------------G-SDPLQGTRSDMNWQEVS-GKSAALLAHWQKLGQFRARHPAIGAGKQTTL---SLKQYY 664 (683)
T ss_pred cCCCC---------------C-CCCcccccccCCccccc-cchHHHHHHHHHHHHHHhhCHHhhCCceEEe---ccCCEE
Confidence 64210 0 01112478999997532 2456899999999999999999998854432 235799
Q ss_pred EEEc----CcEEEEEEC
Q 003230 745 VFER----GNLVFVFNF 757 (837)
Q Consensus 745 af~R----~~llvv~Nf 757 (837)
+|.| +.++||+|=
T Consensus 665 aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 665 AFVREHGDDKVMVVWAG 681 (683)
T ss_pred EEEEEeCCCEEEEEEeC
Confidence 9999 578898884
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1e-49 Score=461.04 Aligned_cols=376 Identities=17% Similarity=0.195 Sum_probs=259.0
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCC-CCCCCCcccccc---------CCCCCCCCHHHHHHHHHHHHHcCCEE
Q 003230 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-YASFGYHVTNFF---------APSSRCGTPDDLKSLIDKAHELGLLV 403 (837)
Q Consensus 334 Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~-~~s~GY~v~~y~---------a~~~~~Gt~edfk~LV~~aH~~GI~V 403 (837)
.+|++|+ ++||||++||||+|||+||++++. ..+|||++.||| +|+|+|||.+|||+||++||++||+|
T Consensus 19 ~~~~~I~-~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLA-ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHH-HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 4678999 699999999999999999999874 356999999999 79999999999999999999999999
Q ss_pred EEeeccccccCCCc-cccc-----------------------CC--CCCCC-------CccccCCCC-------------
Q 003230 404 LMDIVHSHASNNVL-DGLN-----------------------MF--DGTDG-------HYFHSGSRG------------- 437 (837)
Q Consensus 404 IlDvV~NH~s~~~~-~~~~-----------------------~f--dg~~~-------~yf~~~~~g------------- 437 (837)
|||+|+||++.... .+.. .| .+... .|++..+..
T Consensus 98 i~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
T PRK09441 98 YADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKI 177 (479)
T ss_pred EEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEe
Confidence 99999999986432 1000 01 01000 122111100
Q ss_pred --CcccC--------------CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCccccc
Q 003230 438 --YHWMW--------------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 501 (837)
Q Consensus 438 --~~~~w--------------~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~ 501 (837)
....| ..++||++||+|+++|+++++||++++||||||+|+|++|.
T Consensus 178 ~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~------------------ 239 (479)
T PRK09441 178 VGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID------------------ 239 (479)
T ss_pred cCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC------------------
Confidence 00112 14799999999999999999999999999999999999882
Q ss_pred CcccChhHHHHHHHHHHHhhccC-CCeEEEEecCCCCCcceeccccC----CcccchhhhhhHHHHHHHHHhhcchhhhh
Q 003230 502 GFATDVDAVVYLMLVNDMIHGLY-PEAVSIGEDVSGMPTFCIPVQDG----GVGFDYRLQMAIADKWIELLKKRDEDWKM 576 (837)
Q Consensus 502 g~~~d~~~~~fl~~~~~~v~~~~-P~~~~iaE~~~~~p~~~~~~~~g----glgfD~~~~~~~~d~~~~~lk~~~~~~~~ 576 (837)
.+||+.+.+.+++.. |++++|||.|.+.+.....+..+ ...|||.++..+.+.+.. . ....+
T Consensus 240 --------~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~---~--~~~~l 306 (479)
T PRK09441 240 --------AWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQ---G--RDYDM 306 (479)
T ss_pred --------HHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHHHHHHHhc---C--Cccch
Confidence 348899999988765 68999999998766544444332 125898887766543321 1 11222
Q ss_pred hhhHHhhccCcccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCC-CCceE
Q 003230 577 GAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYL 655 (837)
Q Consensus 577 ~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlp-G~p~L 655 (837)
..+.........+.+.++|++|||+.|+.... +. ......++|.+++||+| |+|+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~FldNHD~~R~~~~~------~~-----------------~~~~~~~lA~a~llT~p~GiP~I 363 (479)
T PRK09441 307 RNIFDGTLVEADPFHAVTFVDNHDTQPGQALE------SP-----------------VEPWFKPLAYALILLREEGYPCV 363 (479)
T ss_pred HhhhCcchhhcCcccceeeeccccCCCccccc------cc-----------------ccccchHHHHHHHHhCCCCceee
Confidence 22221111123455678999999999985310 00 00112478899999999 99988
Q ss_pred eecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEE
Q 003230 656 NFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVS 735 (837)
Q Consensus 656 ~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~ 735 (837)
|||+|+|+.+..+ ...+++++++|++||++++ .|.....
T Consensus 364 -YYGdE~g~~g~~~-------------------------------------~~~l~~~i~~Li~lRk~~~---~G~~~~~ 402 (479)
T PRK09441 364 -FYGDYYGASGYYI-------------------------------------DMPFKEKLDKLLLARKNFA---YGEQTDY 402 (479)
T ss_pred -EeccccCCCCCcc-------------------------------------cchHHHHHHHHHHHHHHhC---CCCeeEe
Confidence 9999999854200 1358999999999999964 3433332
Q ss_pred eecCCCcEEEEEc------CcEEEEEECCCCCcccceEEccc-CCccEEEEEeCCCCCcCCccccCCCcceeccccccCC
Q 003230 736 RKDEGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCL-KPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDD 808 (837)
Q Consensus 736 ~~~~~~~Vlaf~R------~~llvv~Nf~~~~~~~~~~l~~~-~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~ 808 (837)
..+++++||.| +.+|||+|.+. .+...+.++.. ..+.|++++..... .+. ..
T Consensus 403 --~~~~~~~~~~R~~~~~~~~vvvvinn~~-~~~~~~~~~~~~~~~~~~d~~~~~~~------------~~~------~~ 461 (479)
T PRK09441 403 --FDHPNCIGWTRSGDEENPGLAVVISNGD-AGEKTMEVGENYAGKTWRDYTGNRQE------------TVT------ID 461 (479)
T ss_pred --ecCCCEEEEEEecCCCCccEEEEEECCC-CCcEEEEeCccCCCCEeEhhhCCCCC------------eEE------EC
Confidence 24467999999 25888998873 23233455432 24557776642110 011 11
Q ss_pred CCeEEEEEEcCceEEEEE
Q 003230 809 QPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 809 ~~~~l~l~Lp~~s~~Vl~ 826 (837)
..+.+.|+||++++.||.
T Consensus 462 ~~G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 462 EDGWGTFPVNGGSVSVWV 479 (479)
T ss_pred CCCeEEEEECCceEEEeC
Confidence 234689999999999973
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=5.9e-45 Score=395.86 Aligned_cols=277 Identities=23% Similarity=0.371 Sum_probs=193.9
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccccc
Q 003230 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 334 Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
|||+||+ ++|||||+||||+||||||++.+. .+|||+|+||++|+|+|||.+|||+||++||++||+||||+|+||++
T Consensus 1 Gd~~gi~-~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 1 GDFRGII-DKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SSHHHHH-HTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CCHHHHH-HhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 8999999 699999999999999999999876 68999999999999999999999999999999999999999999999
Q ss_pred CCCccc---ccCCCCCCCCcccc-------------CCCCCcc-----------cCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003230 414 NNVLDG---LNMFDGTDGHYFHS-------------GSRGYHW-----------MWDSRLFNYGSWEVLRFLLSNARWWL 466 (837)
Q Consensus 414 ~~~~~~---~~~fdg~~~~yf~~-------------~~~g~~~-----------~w~~~~ln~~~~eV~~~l~~~l~~Wl 466 (837)
.++.+. ...++.....||.. ...+..+ ..+.++||++||+||++|+++++||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~ 158 (316)
T PF00128_consen 79 DDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI 158 (316)
T ss_dssp TTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh
Confidence 998542 11122112222220 0011111 12347899999999999999999999
Q ss_pred HHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcceeccc-
Q 003230 467 EEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQ- 545 (837)
Q Consensus 467 ~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~- 545 (837)
+ ++|||||||++++|. .++|+.++..+++..|++++|||.+.+....+....
T Consensus 159 ~-~giDGfR~D~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~ 211 (316)
T PF00128_consen 159 E-EGIDGFRLDAAKHIP--------------------------KEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAY 211 (316)
T ss_dssp H-TTESEEEETTGGGSS--------------------------HHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHH
T ss_pred h-ceEeEEEEccccccc--------------------------hhhHHHHhhhhhhhccccceeeeeccCCccccchhhh
Confidence 9 679999999999873 258999999999988999999999976543222121
Q ss_pred cCCcc----cchhhhhhHHHHHHHHHhhcchhhhhhhhHHhh----ccCcccccceecccCcccccccccchhhhccChh
Q 003230 546 DGGVG----FDYRLQMAIADKWIELLKKRDEDWKMGAIVHTM----TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKD 617 (837)
Q Consensus 546 ~gglg----fD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l----~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~ 617 (837)
.+..+ +++... .+.......... .......+...+ .........++|++|||+.|+..+..
T Consensus 212 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~-------- 280 (316)
T PF00128_consen 212 DGYFDLDSVFDFPDY-GLRSSFFDFWRH--GDGDASDLANWLSSWQSSYPDPYRAVNFLENHDTPRFASRFG-------- 280 (316)
T ss_dssp HGTTSHSEEEHHHHH-HHHHHHHHHHTT--TSSHHHHHHHHHHHHHHHSTTGGGEEEESSHTTSSTHHHHTT--------
T ss_pred ccccccchhhccccc-ccccchhhhhcc--ccchhhhhhhhhhhhhhhhcccceeeecccccccccchhhhc--------
Confidence 11111 222211 111111111111 111111111111 11112456799999999998753211
Q ss_pred HHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCC
Q 003230 618 MYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEW 667 (837)
Q Consensus 618 ~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~ 667 (837)
....+++++.+++||+||+|+| |||+|+|+.+-
T Consensus 281 ----------------~~~~~~~~a~~~ll~~pG~P~i-y~G~E~g~~~~ 313 (316)
T PF00128_consen 281 ----------------NNRDRLKLALAFLLTSPGIPMI-YYGDEIGMTGS 313 (316)
T ss_dssp ----------------THHHHHHHHHHHHHHSSSEEEE-ETTGGGTBBTS
T ss_pred ----------------ccchHHHHHHHHHHcCCCccEE-EeChhccCCCC
Confidence 1112678899999999999877 99999999753
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=1.5e-42 Score=391.92 Aligned_cols=316 Identities=19% Similarity=0.267 Sum_probs=219.3
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 333 ~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.|.|++|+ ++||||++||||+|||+|++++. +++||++.|||.++ ++|||.+|||+||++||++||+||+|+|+||
T Consensus 40 gg~~~~i~-~kldyL~~LGvtaIWL~P~~~s~--s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 40 GGWYNFLM-GKVDDIAAAGITHVWLPPPSHSV--SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CcCHHHHH-HHHHHHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 46899999 69999999999999999999875 36999999999998 6999999999999999999999999999999
Q ss_pred ccCCCccccc---CCCCC----CCCcccc----C------CCCCcc----cCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003230 412 ASNNVLDGLN---MFDGT----DGHYFHS----G------SRGYHW----MWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~---~fdg~----~~~yf~~----~------~~g~~~----~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~g 470 (837)
++.++..... .|.+. ...|+.. + ..+... ..+.++||+.||+|+++|+++++||++++|
T Consensus 117 ~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~G 196 (428)
T PLN00196 117 RTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIG 196 (428)
T ss_pred cccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCC
Confidence 9976642211 12221 1112210 0 001101 113489999999999999999999988899
Q ss_pred CCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCc-----c-----
Q 003230 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPT-----F----- 540 (837)
Q Consensus 471 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~-----~----- 540 (837)
|||||||+|++|. ..|++++ +++.+| .++|||.|.+... .
T Consensus 197 iDG~RlD~ak~~~--------------------------~~f~~~~---v~~~~p-~f~VGE~W~~~~~~~~~~~~~~~~ 246 (428)
T PLN00196 197 FDAWRLDFAKGYS--------------------------AEVAKVY---IDGTEP-SFAVAEIWTSMAYGGDGKPEYDQN 246 (428)
T ss_pred CCEEEeehhhhCC--------------------------HHHHHHH---HHccCC-cEEEEEEeccccccccCCccccch
Confidence 9999999998873 1355543 555566 7899999975210 0
Q ss_pred -----eecccc--C-----CcccchhhhhhHHHHHHHHHhhcchhhhhhhhHHhhc--cCcccccceecccCcccccccc
Q 003230 541 -----CIPVQD--G-----GVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--NRRWLEKCVAYAESHDQALVGD 606 (837)
Q Consensus 541 -----~~~~~~--g-----glgfD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~--~~~~~~~~v~ylenHD~~r~g~ 606 (837)
+..+.+ + .+.|||.+..... ..+.+ +.|...+...... ...++.++|+|++|||+.|+..
T Consensus 247 ~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~----~~~~~--~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~ 320 (428)
T PLN00196 247 AHRQELVNWVDRVGGAASPATVFDFTTKGILN----VAVEG--ELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQH 320 (428)
T ss_pred hhHHHHHHHHHhcCCccCcceeecccchHHHH----HHhcC--CchhhhhhcccCcchhhcChhhceeeccCCCCccccc
Confidence 001111 1 1246666543211 11111 2233221110011 1346778999999999988632
Q ss_pred cchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCC
Q 003230 607 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 686 (837)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn 686 (837)
+ +..+ ..+.++|.+++||+||+||| |||+=
T Consensus 321 --~--~~~~--------------------~~~~~lAyA~iLT~pG~P~I-yYg~~------------------------- 350 (428)
T PLN00196 321 --M--WPFP--------------------SDKVMQGYAYILTHPGNPCI-FYDHF------------------------- 350 (428)
T ss_pred --c--CCCc--------------------cchHHHHHHHHHcCCCcceE-eeCCC-------------------------
Confidence 1 0000 12458899999999999999 99831
Q ss_pred CCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc-CcEEEEEECC
Q 003230 687 NFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER-GNLVFVFNFH 758 (837)
Q Consensus 687 ~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R-~~llvv~Nf~ 758 (837)
++| .+.+++++|+++|++.+++..|...+... ++.+++++| +.++|.+|..
T Consensus 351 ----------~~~---------~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a--~~d~yv~~~~~~~~~~i~~~ 402 (428)
T PLN00196 351 ----------FDW---------GLKEEIAALVSIRNRNGITPTSELRIMEA--DADLYLAEIDGKVIVKIGSR 402 (428)
T ss_pred ----------cCc---------cHHHHHHHHHHHHHhCCCcCCccEEEEEe--cCCEEEEEECCEEEEEECCC
Confidence 223 24458999999999999999886555433 355999999 6788999875
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=3e-40 Score=369.12 Aligned_cols=315 Identities=16% Similarity=0.234 Sum_probs=219.3
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
-|++|+ ++||||++||||+|||+|++++.. +|||++.|||.++++|||.+||++||++||++||+||+|+|+||++.
T Consensus 27 ~w~~i~-~kl~~l~~lG~t~iwl~P~~~~~~--~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLE-GKVPDLAKSGFTSAWLPPPSQSLA--PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEeCCCCcCCC--CCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 578999 699999999999999999998764 59999999999999999999999999999999999999999999964
Q ss_pred CCcc---cccCCCCCCCCcc-----cc-CCCCCcc----cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccc
Q 003230 415 NVLD---GLNMFDGTDGHYF-----HS-GSRGYHW----MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (837)
Q Consensus 415 ~~~~---~~~~fdg~~~~yf-----~~-~~~g~~~----~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 481 (837)
.... ....|+|....|. .. ...+... ..+.++||+.||+||++|++++++|++++||||||+|+|++
T Consensus 104 ~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 104 TTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred CCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 3211 1123444221111 10 0001111 11348999999999999999998777779999999999998
Q ss_pred ccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCCCcc----------------eeccc
Q 003230 482 MMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF----------------CIPVQ 545 (837)
Q Consensus 482 m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~p~~----------------~~~~~ 545 (837)
|. ..|++++.+.+ .| .++|||.|.+.... +..+.
T Consensus 184 ~~--------------------------~~f~~~~~~~~---~p-~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~ 233 (401)
T PLN02361 184 YS--------------------------AKFVKEYIEAA---KP-LFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWI 233 (401)
T ss_pred CC--------------------------HHHHHHHHHhh---CC-eEEEEEEecCCCcCCcccccchhhhhHHHHHHHHH
Confidence 82 34788876654 35 88999999763210 11111
Q ss_pred c--CC--cccchhhhhhHHHHHHHHHhhcchhhhhhhhHHhh--ccCcccccceecccCcccccccccchhhhccChhHH
Q 003230 546 D--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTM--TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 619 (837)
Q Consensus 546 ~--gg--lgfD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l--~~~~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~ 619 (837)
. ++ -.|||++...+.+.+. .+.|.+.+..... ....|++++|+|++|||+.|... .|..+
T Consensus 234 ~~~~~~~~~fDF~l~~~l~~a~~------~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~----~~~~~---- 299 (401)
T PLN02361 234 DGTGGLSAAFDFTTKGILQEAVK------GQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQA----HWPFP---- 299 (401)
T ss_pred HhcCCcceeecHHHHHHHHHHHh------hhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhh----ccCCc----
Confidence 1 22 2488888777655441 1223332221111 12346788999999999987532 11111
Q ss_pred HhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCccccC
Q 003230 620 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 699 (837)
Q Consensus 620 ~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w 699 (837)
....++|.+++||+||+||| |||+=+ +|
T Consensus 300 ----------------~~~~~~AyA~iLT~pG~P~V-yyg~~~-----------------------------------~~ 327 (401)
T PLN02361 300 ----------------SDHIMEGYAYILTHPGIPTV-FYDHFY-----------------------------------DW 327 (401)
T ss_pred ----------------hHHHHHHHHHHHCCCCcCeE-eecccc-----------------------------------CC
Confidence 23557789999999999999 998621 11
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEEE
Q 003230 700 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFN 756 (837)
Q Consensus 700 ~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R~~llvv~N 756 (837)
. ..+.+++++|+.|||++++++.+...+.. .+++-.+|-..+.++|=++
T Consensus 328 ~-------~~~~~~I~~Li~lRk~~~~~~~s~~~i~~-a~~~~y~a~i~~~~~~k~g 376 (401)
T PLN02361 328 G-------GSIHDQIVKLIDIRKRQDIHSRSSIRILE-AQSNLYSAIIDEKLCMKIG 376 (401)
T ss_pred C-------hHHHHHHHHHHHHHHhCCCCCCCcEEEEE-ecCCeEEEEECCeEEEEec
Confidence 1 25788999999999999999988755533 3344455656566555554
No 30
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=1.5e-38 Score=360.96 Aligned_cols=375 Identities=16% Similarity=0.161 Sum_probs=246.9
Q ss_pred CCCHHhhHhhhhh-HHHHcCCCEEEEcCccc-CCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 333 INTYANFRDDVLP-RIKRLGYNAVQIMAVQE-HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 333 ~Gt~~~~~~~~Ld-yLk~LGvt~I~LmPi~e-~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
.|+++||+ ++|| ||++| |++|||||+++ +|. ..+||+|+||++|+|+|||++||++|++ ||+||+|+|+|
T Consensus 16 ~GdL~gl~-~kLd~yL~~l-v~~vhllPff~psp~-sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~N 87 (495)
T PRK13840 16 DGGLKSLT-ALLDGRLDGL-FGGVHILPFFYPIDG-ADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVN 87 (495)
T ss_pred CCCHhHHH-HHHHHHHHHH-hCeEEECCCccCCCC-CCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCC
Confidence 38999999 6999 59999 99999999995 444 5689999999999999999999999985 99999999999
Q ss_pred cccCCCcccccCC-CCCC---CCccccCC------------------C-C------------CcccC-----CCCCCCCC
Q 003230 411 HASNNVLDGLNMF-DGTD---GHYFHSGS------------------R-G------------YHWMW-----DSRLFNYG 450 (837)
Q Consensus 411 H~s~~~~~~~~~f-dg~~---~~yf~~~~------------------~-g------------~~~~w-----~~~~ln~~ 450 (837)
|+|..|+++.... .|.. ..||...+ + + ..+.| +.++||+.
T Consensus 88 HtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~ 167 (495)
T PRK13840 88 HMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVH 167 (495)
T ss_pred cCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCC
Confidence 9999986543311 1111 11221100 0 0 01123 23899999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccC-hhHHHHHHHHHHHhhccCCCeEE
Q 003230 451 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD-VDAVVYLMLVNDMIHGLYPEAVS 529 (837)
Q Consensus 451 ~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d-~~~~~fl~~~~~~v~~~~P~~~~ 529 (837)
||+|+++|+++++||++ .||||||+|++.++.+.. | ..+.+ .++++||+++++.++.. +..+
T Consensus 168 NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~-g-------------t~c~~~pe~~~~l~~lr~~~~~~--~~~l 230 (495)
T PRK13840 168 SAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKA-G-------------TSCFMIPETFEFIDRLAKEARAR--GMEV 230 (495)
T ss_pred CHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCC-C-------------CCcCCChHHHHHHHHHHHHhhhc--CCEE
Confidence 99999999999999998 899999999998875431 1 11222 56789999999999875 5678
Q ss_pred EEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCcccccccccc-
Q 003230 530 IGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKT- 608 (837)
Q Consensus 530 iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~- 608 (837)
|+|.++........-....+-|||.+...+ +..|...+.... .+.+... +.+++||+.|||...+-|-.
T Consensus 231 l~Ei~~y~~~~~~~~~e~~~vYnF~Lp~ll----~~aL~~~~~~~L----~~~l~~~--p~~~~n~L~~HDgIgl~d~~~ 300 (495)
T PRK13840 231 LVEIHSYYKTQIEIAKKVDRVYDFALPPLI----LHTLFTGDVEAL----AHWLEIR--PRNAVTVLDTHDGIGIIDVGA 300 (495)
T ss_pred EEeCccccCccccccccccEEecchhhHHH----HHHHHhCCchHH----HHHHHhC--CCccEEeeecCCCCCcccccc
Confidence 999875432211111234455777665544 333332221111 1111111 45668999999998762210
Q ss_pred ---hhhhccChhHHH----hhhcC-----------CCCC--c---------chhhHHHHHHHHHHHHHhCCCCceEeecc
Q 003230 609 ---IAFWLMDKDMYD----FMALD-----------RPST--P---------RIDRGIALHKMIRLVTMGLGGEAYLNFMG 659 (837)
Q Consensus 609 ---~~~~~~~~~~~~----~~~~~-----------~~~~--~---------~~~~g~al~kla~~l~ltlpG~p~L~y~G 659 (837)
-..-++..+..+ .+.+. ..+. + .....-++..++++++|++||+|-| |||
T Consensus 301 ~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~i-Y~~ 379 (495)
T PRK13840 301 DDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQV-YYV 379 (495)
T ss_pred cccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCccee-eec
Confidence 000112222222 12111 0000 0 0011124567889999999999866 999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecC
Q 003230 660 NEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDE 739 (837)
Q Consensus 660 ~E~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~ 739 (837)
.|+|..+ |... ....+.+++.+|..|+|.+.+..-...+++-.++|+++|+++|++.+.+... ..
T Consensus 380 ~ll~~~N--D~~~----------~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~~~~~~~---~~ 444 (495)
T PRK13840 380 GLLAGPN--DMEL----------LARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFDGAFSYA---AD 444 (495)
T ss_pred hhhccCc--cHHH----------HHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEEe---cC
Confidence 9999975 2211 0124567888999999987665455679999999999999999997655332 23
Q ss_pred CCcEEEEEc--C--cEEEEEECC
Q 003230 740 GDRVIVFER--G--NLVFVFNFH 758 (837)
Q Consensus 740 ~~~Vlaf~R--~--~llvv~Nf~ 758 (837)
+++.++..| + ...+.+||.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (495)
T PRK13840 445 GDTSLTLSWTAGDSSASLTLDFA 467 (495)
T ss_pred CCCeEEEEEecCCceEEEEEEcc
Confidence 344555555 2 456667877
No 31
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=4.1e-39 Score=363.52 Aligned_cols=373 Identities=13% Similarity=0.076 Sum_probs=246.7
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 331 ~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+++|+++++.+ + ||++ ||++|||||+++++. ++||+|+||++|+|+|||.+||++|+++ |+||+|+|+|
T Consensus 14 ~glgdl~g~l~-~--yL~~-~v~~i~LlPffps~s--D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~N 82 (470)
T TIGR03852 14 KNLKELNKVLE-N--YFKD-AVGGVHLLPFFPSTG--DRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMIN 82 (470)
T ss_pred CChhhHHHHHH-H--HHHH-hCCEEEECCCCcCCC--CCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhccc
Confidence 56788888884 5 9999 799999999998874 7999999999999999999999999997 8999999999
Q ss_pred cccCCCcccccCCC-C---CCCCccc-c------C-C-----------C------------C-CcccC-----CCCCCCC
Q 003230 411 HASNNVLDGLNMFD-G---TDGHYFH-S------G-S-----------R------------G-YHWMW-----DSRLFNY 449 (837)
Q Consensus 411 H~s~~~~~~~~~fd-g---~~~~yf~-~------~-~-----------~------------g-~~~~w-----~~~~ln~ 449 (837)
|+|..|+|+...-. + ....||. . + + + + ..+.| +.++|||
T Consensus 83 HtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~ 162 (470)
T TIGR03852 83 HISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDV 162 (470)
T ss_pred ccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCC
Confidence 99999865443221 1 1112333 0 0 0 0 0 01122 3489999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccC--hhHHHHHHHHHHHhhccCCCe
Q 003230 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD--VDAVVYLMLVNDMIHGLYPEA 527 (837)
Q Consensus 450 ~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d--~~~~~fl~~~~~~v~~~~P~~ 527 (837)
.||+|+++|.++++||++ .||||||+||+.++.+. ....|.+ .+++++|+++++.+ ..|++
T Consensus 163 ~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~--------------~Gt~c~~l~pet~~~l~~~r~~~--~~~~~ 225 (470)
T TIGR03852 163 TSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKK--------------LGTNDFFVEPEIWELLDEVRDIL--APTGA 225 (470)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhccc--------------CCCCcccCChhHHHHHHHHHHHh--ccCCC
Confidence 999999999999999997 89999999999988543 2223322 57899999999988 45699
Q ss_pred EEEEecCCCCCcceeccccCCcccchhhhhhHHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCccccccccc
Q 003230 528 VSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDK 607 (837)
Q Consensus 528 ~~iaE~~~~~p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~ 607 (837)
++|+|.+........--.++.+.|+|.+...+...+...-......|.+. .+..++||+.|||...+.+-
T Consensus 226 ~ll~E~~~~~~~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~----------~p~~~~nfL~sHDgigl~~~ 295 (470)
T TIGR03852 226 EILPEIHEHYTIQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRK----------SPMKQFTTLDTHDGIGVVDV 295 (470)
T ss_pred EEEeHhhhhcccccccccceeEEccCccchhhHHHhhccCHHHHHHHHHh----------CcccceEEeecCCCCCCccc
Confidence 99999974333221101244567888876654322211111112223221 12234699999999765221
Q ss_pred chhhhccCh----hHHHhhhc----------CC-CCCc-----------chhhHHHHHHHHHHHHHhCCCCceEeecccc
Q 003230 608 TIAFWLMDK----DMYDFMAL----------DR-PSTP-----------RIDRGIALHKMIRLVTMGLGGEAYLNFMGNE 661 (837)
Q Consensus 608 ~~~~~~~~~----~~~~~~~~----------~~-~~~~-----------~~~~g~al~kla~~l~ltlpG~p~L~y~G~E 661 (837)
. -+++. .+...|.. .. .++. ......++..+|++++|++||+|.| |||.|
T Consensus 296 ~---glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~i-Yy~~l 371 (470)
T TIGR03852 296 K---DLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQV-YYVGL 371 (470)
T ss_pred c---ccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceE-Eechh
Confidence 0 01222 12222220 00 0011 1112236667899999999999988 99999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCC-CcEEEEeecCC
Q 003230 662 FGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS-EHQYVSRKDEG 740 (837)
Q Consensus 662 ~G~~e~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~-g~~~i~~~~~~ 740 (837)
+|+.+..+.+. -.+..+..+|..++....+....+.+.+=...||++|+++|++.- |.+.+ ...+
T Consensus 372 lg~~nD~~~~~------------rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~--~~~~ 437 (470)
T TIGR03852 372 LAGKNDIELLE------------ETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDI--ETPS 437 (470)
T ss_pred hcCCchHHHHH------------hcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEe--cCCC
Confidence 99976332221 122345567777766554322223344444559999999999965 44333 3456
Q ss_pred CcEEEEEc------CcEEEEEECCC
Q 003230 741 DRVIVFER------GNLVFVFNFHW 759 (837)
Q Consensus 741 ~~Vlaf~R------~~llvv~Nf~~ 759 (837)
+.|++|.| +.+++++|++.
T Consensus 438 ~~~~~~~r~~~~~~~~~~~~~n~~~ 462 (470)
T TIGR03852 438 ENQIEIVRTNKDGGNKAILTANLKT 462 (470)
T ss_pred CcEEEEEEEcCCCCceEEEEEecCC
Confidence 77999998 36899999994
No 32
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=9.3e-37 Score=346.74 Aligned_cols=463 Identities=12% Similarity=0.115 Sum_probs=291.9
Q ss_pred CceEEEeecCCCCCCCCCCCHHhhHh-hhhhHHHHcCCCEEEEcCcccC---------CCCCCCCCccccccCCCCCCCC
Q 003230 316 SLRIYEAHVGMSSTEPIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEH---------SYYASFGYHVTNFFAPSSRCGT 385 (837)
Q Consensus 316 ~~~IYE~hv~~f~~~~~~Gt~~~~~~-~~LdyLk~LGvt~I~LmPi~e~---------~~~~s~GY~v~~y~a~~~~~Gt 385 (837)
..+=+.+++.+.-..++..-+..+.+ ...+||++|||++|||+|++++ |. ...||+++| |.|+|+|||
T Consensus 51 a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~-~D~gyDi~d-~~Idp~~GT 128 (688)
T TIGR02455 51 ASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPS-IDGNFDRIS-FDIDPLLGS 128 (688)
T ss_pred cCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCC-CCCCCCccc-CccCcccCC
Confidence 34566777777654444333444433 5789999999999999999999 65 357999999 599999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCC-CCCCCCcc---------------------------------
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGHYF--------------------------------- 431 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f-dg~~~~yf--------------------------------- 431 (837)
.+||++||++||++||+||+|+|+||||..|+.-+..- ++..+.||
T Consensus 129 ~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L 208 (688)
T TIGR02455 129 EEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDEL 208 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHH
Confidence 99999999999999999999999999999884111110 22222233
Q ss_pred ----------------ccCCCCCcccCC----------------------CCCCCCCCHH--HHHHHH-HHHHHHHHHcC
Q 003230 432 ----------------HSGSRGYHWMWD----------------------SRLFNYGSWE--VLRFLL-SNARWWLEEYK 470 (837)
Q Consensus 432 ----------------~~~~~g~~~~w~----------------------~~~ln~~~~e--V~~~l~-~~l~~Wl~e~g 470 (837)
..+.....|.|+ .|+|||.||. ||+.|+ +++++|++ .|
T Consensus 209 ~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG 287 (688)
T TIGR02455 209 KAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LG 287 (688)
T ss_pred hhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hc
Confidence 111122345554 2789999999 999999 89999999 89
Q ss_pred CCeEEEcccccccccccCccccccCCcccccCccc-ChhHHHHHHHHHHHhh--ccCCCeEEEEecCCCCCcceeccccC
Q 003230 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFAT-DVDAVVYLMLVNDMIH--GLYPEAVSIGEDVSGMPTFCIPVQDG 547 (837)
Q Consensus 471 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~-d~~~~~fl~~~~~~v~--~~~P~~~~iaE~~~~~p~~~~~~~~g 547 (837)
+||||+|++.+|.... +- .+. ..+++.|++.+|+.|. ..+|+.++++|..- ++.....+..+
T Consensus 288 ~~GfRLDAvpfLg~e~-~~-------------~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl-~~~d~~~~~g~ 352 (688)
T TIGR02455 288 ARGLRLDANGFLGVER-RA-------------EGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNL-TIDDIAAMSHG 352 (688)
T ss_pred cccceeccccceeeec-CC-------------CCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccC-CHHHHHHHhCC
Confidence 9999999998885431 10 011 1346678999999998 78899999999974 45555555554
Q ss_pred C--cccchhhhhhHHHHHHHHHhhcchhhhhhhhHHhhccCc-ccccceecccCcccccccccchhhh------------
Q 003230 548 G--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRR-WLEKCVAYAESHDQALVGDKTIAFW------------ 612 (837)
Q Consensus 548 g--lgfD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~~~~-~~~~~v~ylenHD~~r~g~~~~~~~------------ 612 (837)
+ +.|||..+-. ....|...+......-+...+ ... -..+.+.++.|||+..+. .+.+|
T Consensus 353 ~~dl~~dF~t~p~----~~~AL~tgda~pLr~~L~~~~-~~gid~~~~~~~LrNHDELtle--lvh~~~~~~~~~~~~~g 425 (688)
T TIGR02455 353 GADLSYDFITRPA----YHHALLTGDTEFLRLMLKEMH-AFGIDPASLIHALQNHDELTLE--LVHFWTLHAHDHYHYKG 425 (688)
T ss_pred CcceeecccccHH----HHHHHHcCCHHHHHHHHHhhh-cCCCCchhhhhhccCccccchh--hhhhccccccccccccc
Confidence 3 3355543322 222222222211111111111 111 223457899999996552 01111
Q ss_pred ----------ccChhHHHhhhcCCC---------------------------CCcchhhHHHHHHHHHHHHHh----CCC
Q 003230 613 ----------LMDKDMYDFMALDRP---------------------------STPRIDRGIALHKMIRLVTMG----LGG 651 (837)
Q Consensus 613 ----------~~~~~~~~~~~~~~~---------------------------~~~~~~~g~al~kla~~l~lt----lpG 651 (837)
-+-.+||..++++.. ..+..+...+..+++.+++++ +||
T Consensus 426 ~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG 505 (688)
T TIGR02455 426 QTLPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPG 505 (688)
T ss_pred ccCCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCC
Confidence 133466766666431 112223445667888899999 999
Q ss_pred CceEeecc--------------cccCCCCCCCCCCCCCCCCCCCcCCC----CCCCC---cccCccccCCccccccchHH
Q 003230 652 EAYLNFMG--------------NEFGHPEWIDFPRGDQRLPNGQFVPG----NNFSY---DKCRRRFDLGDADYLRYRGM 710 (837)
Q Consensus 652 ~p~L~y~G--------------~E~G~~e~~d~p~~~~~~~~~~~~~g----n~~s~---~~~r~~~~w~~~~~~~~~~l 710 (837)
+|+| ||| +|+||.+..-.++. |....+ .-.|. -..+..+.=...+.....++
T Consensus 506 ~p~L-~ygdl~GalpL~~~~v~deigmGD~~wl~rg------gfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~ 578 (688)
T TIGR02455 506 VFAL-SGWDLVGALPLAAEAVAELMGDGDTRWIHRG------GYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSF 578 (688)
T ss_pred ceEe-ecccccccccccccchhhhhccCccccccCC------CcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccH
Confidence 9888 999 99999543322321 000000 00000 00011111011223445699
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc------CcEEEEEECCCCCcccceEEcccCCccEEEEEeCCC
Q 003230 711 QEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDD 784 (837)
Q Consensus 711 ~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R------~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~ 784 (837)
+++.++|++.|+++++...+... .....+..|+|+.| +.+|+|.||+.......+.++...++...++++...
T Consensus 579 l~~l~~il~vR~~~~i~~~~~~~-~~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~ 657 (688)
T TIGR02455 579 ACKLKKILAVRQAYDIAASKQIL-IPDVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESV 657 (688)
T ss_pred HHHHHHHHHHHHhCCcccCceee-ecCCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCc
Confidence 99999999999999988777432 23455678999988 249999999953333333333334556666654322
Q ss_pred CCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEEEcCC
Q 003230 785 PLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALADE 830 (837)
Q Consensus 785 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~~~~~ 830 (837)
. + . -...+++.|+|+|++..+|..+..
T Consensus 658 ~--~---~--------------~~~~~~~~i~L~~y~~~wl~~~~~ 684 (688)
T TIGR02455 658 E--G---D--------------LTDDCELMINLDPYEALALRIVNA 684 (688)
T ss_pred c--C---C--------------cCCCceeEEEecCcceEEEEeccc
Confidence 1 0 0 012345889999999999987643
No 33
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.2e-38 Score=364.04 Aligned_cols=401 Identities=21% Similarity=0.269 Sum_probs=247.2
Q ss_pred ceEEEeecCCCCCC--------CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHH
Q 003230 317 LRIYEAHVGMSSTE--------PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD 388 (837)
Q Consensus 317 ~~IYE~hv~~f~~~--------~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~ed 388 (837)
.+||++.++.|... .+.||++||+ ++||||++|||++|||+||++++. .++||++.||+.+++.|||++|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~-~~LdYl~~LGv~aiwl~Pi~~s~~-~~~gY~~~Dy~~id~~~Gt~~d 78 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGIT-EKLDYLKELGVDAIWLSPIFESPQ-ADHGYDVSDYTKVDPHFGTEED 78 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHH-HhhhHHHHhCCCEEEeCCCCCCCc-cCCCccccchhhcCcccCCHHH
Confidence 47999999998654 3469999999 799999999999999999999863 5799999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCC----CCcccc---------------CCCCCccc---C----
Q 003230 389 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTD----GHYFHS---------------GSRGYHWM---W---- 442 (837)
Q Consensus 389 fk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~----~~yf~~---------------~~~g~~~~---w---- 442 (837)
|++||++||++||+||||+|+||++..|.+......... ..||.. ...+..|. +
T Consensus 79 ~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (505)
T COG0366 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceE
Confidence 999999999999999999999999999854332111110 122221 01122221 1
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHH
Q 003230 443 ------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLV 516 (837)
Q Consensus 443 ------~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~ 516 (837)
..++||+.|++||+.+++.++||++ +||||||+|++++|.... +.+ .... .........++++..
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~-~~~-----~~~~--~~~~~~~~~~~~~~~ 229 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDF-GLP-----PSEE--NLTFLEEIHEYLREE 229 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhcccc-CCC-----Cccc--ccccHHHHHHHHHHH
Confidence 1267999999999999999999999 999999999999985421 100 0000 000011122444444
Q ss_pred HHHhhccCCCeEEEEecCCCCCcceecccc-C--C--cccchhhhhhHH----HHHHHHHhhcchhhhhhhhHHhh-ccC
Q 003230 517 NDMIHGLYPEAVSIGEDVSGMPTFCIPVQD-G--G--VGFDYRLQMAIA----DKWIELLKKRDEDWKMGAIVHTM-TNR 586 (837)
Q Consensus 517 ~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~-g--g--lgfD~~~~~~~~----d~~~~~lk~~~~~~~~~~l~~~l-~~~ 586 (837)
+..+.......+..++........+..... . . +.|++....... ......++.....|. ..+ ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 304 (505)
T COG0366 230 NPDVLIYGEAITDVGEAPGAVKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWP-----LAVNLND 304 (505)
T ss_pred HHHHHhcCcceeeeeccccccchhhhhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHH-----hhhcccc
Confidence 444433323444444443322222221100 0 0 011111000000 000000110001010 001 012
Q ss_pred cccccceecccCcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCC
Q 003230 587 RWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE 666 (837)
Q Consensus 587 ~~~~~~v~ylenHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e 666 (837)
.|. ..|..|||+.|+-+... .+. ....+..+++..++++++|+|+| |||+|+|+.+
T Consensus 305 ~~~---~~~~~~hD~~r~~~~~~----~~~----------------~~~~~~~~~~~~~~~~~~g~p~i-y~G~e~g~~~ 360 (505)
T COG0366 305 GWN---NLFLSNHDQPRLLSRFG----DDV----------------GGRDASAKLLAALLFLLPGTPFI-YYGDELGLTN 360 (505)
T ss_pred Cch---hhhhhhcCccceeeecc----CCc----------------cchHHHHHHHHHHHHhCCCCcEE-ecccccCCCC
Confidence 222 34789999998854321 000 00135667788899999999988 9999999976
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCCcccCccccCC---------------------------cccc--ccchHHHHHHHHH
Q 003230 667 WIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLG---------------------------DADY--LRYRGMQEFDRAM 717 (837)
Q Consensus 667 ~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~---------------------------~~~~--~~~~~l~~f~r~L 717 (837)
..+.+........ .......+++.||.+|.|. .... ....+++.++++|
T Consensus 361 ~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l 438 (505)
T COG0366 361 FKDPPIKYYDDVE--LDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRL 438 (505)
T ss_pred CCCcchhhhchhh--hhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHH
Confidence 5433211001000 0113345667788888887 1111 1144899999999
Q ss_pred HHHHHHh-cCCCCCcEEEEeecCCCcEEEEEcC----cEEEEEECCC
Q 003230 718 QHLEEKY-GFMTSEHQYVSRKDEGDRVIVFERG----NLVFVFNFHW 759 (837)
Q Consensus 718 i~LR~~~-~~L~~g~~~i~~~~~~~~Vlaf~R~----~llvv~Nf~~ 759 (837)
+++|+.+ ..+..|...+........+++|.|. .+++++|++.
T Consensus 439 ~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 485 (505)
T COG0366 439 IALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSE 485 (505)
T ss_pred HHHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCC
Confidence 9999988 5556664555555555679999993 3899999994
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=2.1e-36 Score=354.04 Aligned_cols=328 Identities=19% Similarity=0.264 Sum_probs=214.8
Q ss_pred ceEEEeecCCCC-CCCCCCC-HHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHH
Q 003230 317 LRIYEAHVGMSS-TEPIINT-YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLID 394 (837)
Q Consensus 317 ~~IYE~hv~~f~-~~~~~Gt-~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~ 394 (837)
...||+.+..|- ..+.-|. |++|+ ++||||++||||+|||+|++++.. ++||++.|||.++++|||.+||++||+
T Consensus 499 ~~~~eVmlQgF~Wds~~dg~w~~~I~-ekldyL~~LG~taIWLpP~~~s~s--~~GY~p~D~y~lds~yGT~~ELk~LI~ 575 (894)
T PLN02784 499 GSGFEILCQGFNWESHKSGRWYMELG-EKAAELSSLGFTVVWLPPPTESVS--PEGYMPKDLYNLNSRYGTIDELKDLVK 575 (894)
T ss_pred cCCceEEEEeEEcCcCCCCchHHHHH-HHHHHHHHhCCCEEEeCCCCCCCC--CCCcCcccccccCcCcCCHHHHHHHHH
Confidence 456777776664 1122233 78998 699999999999999999998764 699999999999999999999999999
Q ss_pred HHHHcCCEEEEeeccccccCCCcc--c-ccCCCCCC----------CCccccCCCCCcc----cCCCCCCCCCCHHHHHH
Q 003230 395 KAHELGLLVLMDIVHSHASNNVLD--G-LNMFDGTD----------GHYFHSGSRGYHW----MWDSRLFNYGSWEVLRF 457 (837)
Q Consensus 395 ~aH~~GI~VIlDvV~NH~s~~~~~--~-~~~fdg~~----------~~yf~~~~~g~~~----~w~~~~ln~~~~eV~~~ 457 (837)
+||++||+||+|+|+||++..+.. + .+.|.+.. ...|.. ++..+ ..+.++||+.||+||+.
T Consensus 576 a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~G--rG~~~sgddf~~lPDLDh~npeVR~e 653 (894)
T PLN02784 576 SFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQG--RGNKSSGDNFHAAPNIDHSQDFVRKD 653 (894)
T ss_pred HHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCC--cCCcCcccccCcCCcCCCCCHHHHHH
Confidence 999999999999999999864311 1 11222210 001110 11111 12348999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCCCC
Q 003230 458 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGM 537 (837)
Q Consensus 458 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~~~ 537 (837)
|.++++||++++||||||||+|+++.. .|++++ ++...| .++|||.|++.
T Consensus 654 L~~WlkWL~~e~G~DGfRLDaVKgf~~--------------------------~Fvkey---v~a~kp-~F~VGEyWd~~ 703 (894)
T PLN02784 654 LKEWLCWMRKEVGYDGWRLDFVRGFWG--------------------------GYVKDY---MEASEP-YFAVGEYWDSL 703 (894)
T ss_pred HHHHHHHHHhccCCCEEEEeccCCCCH--------------------------HHHHHH---HhccCC-cEEEEEecccc
Confidence 999999999899999999999986521 243443 334455 79999999873
Q ss_pred Cc--------------ceecccc--CC--cccchhhhhhHHHHHHHHHhhcchhhhhhhhHHh--hccCcccccceeccc
Q 003230 538 PT--------------FCIPVQD--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHT--MTNRRWLEKCVAYAE 597 (837)
Q Consensus 538 p~--------------~~~~~~~--gg--lgfD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~--l~~~~~~~~~v~yle 597 (837)
.. .+..|.. ++ -.|||.+...+.+.+ + ..+.|.+.+.... -.-..|++++|+|++
T Consensus 704 ~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~----~-~~e~wrL~d~~g~~~glv~~~P~~AVTFVD 778 (894)
T PLN02784 704 SYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSAL----E-RCEYWRLSDQKGKPPGVVGWWPSRAVTFIE 778 (894)
T ss_pred ccccCccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHH----h-ccchhhhhhccCCCCCeeccccCceEEEec
Confidence 21 0111111 11 237777665553322 1 2344444432210 112357889999999
Q ss_pred CcccccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCCCCCCCCCCC
Q 003230 598 SHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRL 677 (837)
Q Consensus 598 nHD~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e~~d~p~~~~~~ 677 (837)
|||+.+... .|..+. ....++++++||+||+||| |||+=||.
T Consensus 779 NHDTg~~Q~----~w~~p~--------------------~k~~~AYAyILthpG~PcV-Fy~h~y~~------------- 820 (894)
T PLN02784 779 NHDTGSTQG----HWRFPE--------------------GKEMQGYAYILTHPGTPAV-FYDHIFSH------------- 820 (894)
T ss_pred CCCCCCCcc----cCCCCc--------------------cchhhHHHHHHcCCCcceE-Eehhhhhh-------------
Confidence 999965311 121111 1224478999999999999 88775431
Q ss_pred CCCCcCCCCCCCCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEE
Q 003230 678 PNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVF 755 (837)
Q Consensus 678 ~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R~~llvv~ 755 (837)
+..-+++|+.+|+...+-....-.+.. .+.+--.|-..+.++|-+
T Consensus 821 --------------------------------~~~~I~~Li~iRk~~gI~~~S~v~i~~-a~~~~Y~a~i~~k~~~ki 865 (894)
T PLN02784 821 --------------------------------YHPEIASLISLRNRQKIHCRSEVKITK-AERDVYAAIIDEKVAMKI 865 (894)
T ss_pred --------------------------------hHHHHHHHHHHHHHcCCCCCCceeEEE-ecCCcEEEEeCCeeEEEE
Confidence 112389999999999876665433322 233333444446666655
No 35
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.8e-34 Score=329.87 Aligned_cols=167 Identities=28% Similarity=0.386 Sum_probs=136.2
Q ss_pred CCCceEEEeecCCCCCC--CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHH
Q 003230 314 PKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKS 391 (837)
Q Consensus 314 ~~~~~IYE~hv~~f~~~--~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~ 391 (837)
.+..+|||+.+++|..+ .+.|+++|++ ++|+||++||+|+|||+||++++. ..+||++.||+.++|+|||.+||++
T Consensus 15 W~~~~~YQI~~~sF~~s~~d~~G~~~GI~-~kldyi~~lG~taiWisP~~~s~~-~~~GY~~~d~~~l~p~fGt~edf~~ 92 (545)
T KOG0471|consen 15 WKTESIYQIYPDSFADSDGDGVGDLKGIT-SKLDYIKELGFTAIWLSPFTKSSK-PDFGYDASDLEQLRPRFGTEEDFKE 92 (545)
T ss_pred hhcCceeEEeccccccccCCCccccccch-hhhhHHHhcCCceEEeCCCcCCCH-HHhccCccchhhhcccccHHHHHHH
Confidence 46788999999999654 5679999999 799999999999999999999986 3799999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeeccccccCCCcccccCC-------------CCCC--------CCccccCCCCCcccC--------
Q 003230 392 LIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-------------DGTD--------GHYFHSGSRGYHWMW-------- 442 (837)
Q Consensus 392 LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f-------------dg~~--------~~yf~~~~~g~~~~w-------- 442 (837)
||+++|++||++|+|+|+||++..+.++.... +|.. +..+.....+..|.|
T Consensus 93 Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~ 172 (545)
T KOG0471|consen 93 LILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYY 172 (545)
T ss_pred HHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCccccccccee
Confidence 99999999999999999999997765443221 1110 111111111222222
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHH-HHHHHcCCCeEEEccccccc
Q 003230 443 ------DSRLFNYGSWEVLRFLLSNAR-WWLEEYKFDGFRFDGVTSMM 483 (837)
Q Consensus 443 ------~~~~ln~~~~eV~~~l~~~l~-~Wl~e~gvDGfR~D~v~~m~ 483 (837)
..+++|++||+|++.|.+.++ +|++ +||||||+|+++++.
T Consensus 173 l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~ 219 (545)
T KOG0471|consen 173 LGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA 219 (545)
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc
Confidence 238999999999999999999 8888 999999999999874
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=7e-31 Score=310.99 Aligned_cols=174 Identities=22% Similarity=0.306 Sum_probs=133.2
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccccc
Q 003230 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 334 Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
+||.+++ ++||||++||||+|||+||+++...++|||+++||+.|+++|||.++|++||++||++||+||||+|+||++
T Consensus 13 ~tf~~~~-~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 13 FTFDDAA-ALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCHHHHH-HhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7999999 699999999999999999999866567999999999999999999999999999999999999999999999
Q ss_pred CC---Ccccc------------cCCC-----------------CCC-----------------C----CccccC----CC
Q 003230 414 NN---VLDGL------------NMFD-----------------GTD-----------------G----HYFHSG----SR 436 (837)
Q Consensus 414 ~~---~~~~~------------~~fd-----------------g~~-----------------~----~yf~~~----~~ 436 (837)
.+ +.++. ..|+ |.. . .||+.. +.
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 76 21111 0110 000 0 022210 00
Q ss_pred CC-----------------------c---ccC----------------CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeE
Q 003230 437 GY-----------------------H---WMW----------------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 474 (837)
Q Consensus 437 g~-----------------------~---~~w----------------~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGf 474 (837)
.+ + ..| +.+.++.++|+|.+.....+..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 00 0 012 12567888999999999999999998779999
Q ss_pred EEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEe-cCC
Q 003230 475 RFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE-DVS 535 (837)
Q Consensus 475 R~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE-~~~ 535 (837)
|+|.+..+. ++..||+.+++.+ .|+.+++.| .+.
T Consensus 252 RIDh~dGL~------------------------dP~~Yl~rLr~~~---~~~~yivvEKIl~ 286 (825)
T TIGR02401 252 RIDHIDGLA------------------------DPEGYLRRLRELV---GPARYLVVEKILA 286 (825)
T ss_pred EeccccccC------------------------ChHHHHHHHHHhc---CCCceEEEEEecc
Confidence 999997652 3456999998664 445788888 443
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.94 E-value=2.5e-25 Score=264.96 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=77.9
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccccc
Q 003230 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 334 Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
++|.+++ ++||||++||||+|||+||++....++|||+++||+.|+++|||.++|++||++||++||+||||+|+||++
T Consensus 17 ~tf~~~~-~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 17 FTFDDAA-ELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCHHHHH-HHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7899999 699999999999999999999865578999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 003230 414 NNV 416 (837)
Q Consensus 414 ~~~ 416 (837)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 764
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.7e-22 Score=210.09 Aligned_cols=381 Identities=17% Similarity=0.207 Sum_probs=228.8
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCC-----CCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-----YASF-GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~-----~~s~-GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
.+..|+.++-..|.--||-.||+.|++|+.. +.=| .|+|.. |.++.|-|..+||+.||.+|.+-|+|+++|+|
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv 116 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAV 116 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHHHHHHHhhccceEEEehhh
Confidence 4667777888899999999999999999732 2223 699999 68999999999999999999999999999999
Q ss_pred cccccCCCccc-------c------cCCCCCCCC--ccccCC----CC------------CcccCCCCCCCCCCHHHHHH
Q 003230 409 HSHASNNVLDG-------L------NMFDGTDGH--YFHSGS----RG------------YHWMWDSRLFNYGSWEVLRF 457 (837)
Q Consensus 409 ~NH~s~~~~~~-------~------~~fdg~~~~--yf~~~~----~g------------~~~~w~~~~ln~~~~eV~~~ 457 (837)
+||++....+| . ..|.|.+.. -|+... .. .+..-+..+||.++.-||..
T Consensus 117 ~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~K 196 (504)
T KOG2212|consen 117 INHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSK 196 (504)
T ss_pred hhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHH
Confidence 99998632111 1 223332211 122210 00 11112347899999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHH-HHHHHHHHHhhccCCCeEEEEecCCC
Q 003230 458 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGEDVSG 536 (837)
Q Consensus 458 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~-~fl~~~~~~v~~~~P~~~~iaE~~~~ 536 (837)
|++.|...++ .||-|||.|+++||... |+..+ .-|+.+|.-.-..+...+++-|...-
T Consensus 197 ive~L~hLid-lGVAGFRvDAsKHMwp~--------------------Di~~I~~~l~nLnsD~f~s~srpfi~qEVID~ 255 (504)
T KOG2212|consen 197 IAEYLNHLID-IGVAGFRVDASKHMWPG--------------------DIKAILDKLHNLNSDWFPSGSKPFIYQEVIDL 255 (504)
T ss_pred HHHHHHHHHH-hccceeeechhhccChH--------------------HHHHHHHHHhhcccccccCCCCceehhhhhhc
Confidence 9999999999 99999999999999432 22221 11223332222223346677776532
Q ss_pred C--CcceeccccCCcccchhhhhhHHHH-----HHHHHhhcchhhhhhhhHHhhccCcccccceecccCcccccccccch
Q 003230 537 M--PTFCIPVQDGGVGFDYRLQMAIADK-----WIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 609 (837)
Q Consensus 537 ~--p~~~~~~~~gglgfD~~~~~~~~d~-----~~~~lk~~~~~~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~~ 609 (837)
- +--+..+..-|---.|++...+... -+++|+...++|... ..+++++|++|||+.|-...--
T Consensus 256 GgE~v~~~dY~g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf~----------~s~~~L~FvDNHDNQR~~gagg 325 (504)
T KOG2212|consen 256 GGEPIKSSDYFGNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGFM----------PSDRALVFVDNHDNQRGHGAGG 325 (504)
T ss_pred CCceeecccccCCceeeeeechHHHHHHHhcchhHHHHHhcCCccCcC----------CCcceEEEeccCcccccCCCCc
Confidence 1 2222233322222344443333322 235565555555322 2246789999999998643211
Q ss_pred hhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCC-CCceEeecccccCCCCCCCCCCCCCCCCCCCcCCCCCC
Q 003230 610 AFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNF 688 (837)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~g~al~kla~~l~ltlp-G~p~L~y~G~E~G~~e~~d~p~~~~~~~~~~~~~gn~~ 688 (837)
+.. ......++.|||.+++|++| |+|-+ ..---|-..+|...+..+. .-.-...+
T Consensus 326 a~V------------------ltYK~~~~YkmA~~FmLA~PyG~~RV-MSSFaF~~~D~~PP~~~~~-----~i~SP~Fn 381 (504)
T KOG2212|consen 326 ASV------------------LTYKDARLYKMAVGFMLAHPYGFTRV-MSSFAFDVNDWVPPPNNNG-----VIKSPTFN 381 (504)
T ss_pred ceE------------------EEecchhhhhhhhhhheecccCcchh-heeeeeecCCCCCCCCCCc-----ceecceeC
Confidence 100 01123468899999999999 88876 3333333334432221100 00112222
Q ss_pred CCcccCccccCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc-CcEEEEEECCCCCcccceE
Q 003230 689 SYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER-GNLVFVFNFHWNSSYSDYR 767 (837)
Q Consensus 689 s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LR~~~~~L~~g~~~i~~~~~~~~Vlaf~R-~~llvv~Nf~~~~~~~~~~ 767 (837)
+...|.. -|... .-..-++.|..+|..-. +.+...+-+++.+-|+|.| ..=++++|...-.-...+.
T Consensus 382 ~D~tC~~--GWvCE------HRWrqI~~Mv~FrnAV~----~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~ 449 (504)
T KOG2212|consen 382 PDTTCGN--GWVCE------HRWRQIRNMVNFRNAVD----GTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQ 449 (504)
T ss_pred CCCcccC--ceeee------chHHHHHHHHhhhhhcC----CccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHh
Confidence 2333433 23322 23445788999987652 2222333366677999999 4677788866322223344
Q ss_pred EcccCCccEEEEEeCCC
Q 003230 768 VGCLKPGKYKIVLDSDD 784 (837)
Q Consensus 768 l~~~~~g~~~~vlnsd~ 784 (837)
.+ .++|+|+.+++.+.
T Consensus 450 T~-LPAGtYCDviSG~~ 465 (504)
T KOG2212|consen 450 TG-LPAGTYCDVISGDK 465 (504)
T ss_pred cC-CCCCceeeeecccc
Confidence 45 45799999997543
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.86 E-value=4.9e-22 Score=198.19 Aligned_cols=93 Identities=25% Similarity=0.368 Sum_probs=84.0
Q ss_pred EeecCCCCC--CCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCC--CCCCCccccccCCCCCCCCHHHHHHHHHHH
Q 003230 321 EAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY--ASFGYHVTNFFAPSSRCGTPDDLKSLIDKA 396 (837)
Q Consensus 321 E~hv~~f~~--~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~--~s~GY~v~~y~a~~~~~Gt~edfk~LV~~a 396 (837)
|+.+.+|.. ..+.|+|++++ ++|+||++||||+|||+||++++.. .+|||+++||++++++|||++||++||++|
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~-~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~ 79 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGII-EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAA 79 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHH-HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHH
Confidence 355666643 34579999999 6999999999999999999999853 679999999999999999999999999999
Q ss_pred HHcCCEEEEeeccccccC
Q 003230 397 HELGLLVLMDIVHSHASN 414 (837)
Q Consensus 397 H~~GI~VIlDvV~NH~s~ 414 (837)
|++||+||||+|+||++.
T Consensus 80 h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 80 HARGIKVILDVVINHTSD 97 (166)
T ss_pred HHCCCEEEEEECCCCCCC
Confidence 999999999999999986
No 40
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.82 E-value=3.1e-20 Score=169.03 Aligned_cols=96 Identities=56% Similarity=1.106 Sum_probs=87.4
Q ss_pred eCCcEEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc-cccCCccc
Q 003230 201 SDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWI 279 (837)
Q Consensus 201 ~~~gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~~-~~~~~~~~ 279 (837)
.++|++||||||+|++|+|+||||+|++..++|.+.+.|+|+++||+..+|...++||+.|||+|...+|. .+++|||+
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA 82 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWI 82 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcce
Confidence 45789999999999999999999999988899999999999999999988888899999999999986554 58999999
Q ss_pred eecccCCCCCCCCcEEe
Q 003230 280 KFSVQAPGEIPYNGIYY 296 (837)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ 296 (837)
+++++.|++..|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (99)
T cd02854 83 KYVTQDKETALYDGVFW 99 (99)
T ss_pred eEEEeCCCCcceeeEEC
Confidence 99999998877887775
No 41
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.77 E-value=3.1e-17 Score=184.28 Aligned_cols=306 Identities=24% Similarity=0.331 Sum_probs=198.7
Q ss_pred ccCCcEEeCCc-EEEEEeCCCcC-------eEEEEe-------ecCCCCC------CccccccCCCceEEEEeCCCCCCC
Q 003230 194 EKFGFIRSDTG-ITYREWAPGAK-------SASLIG-------DFNNWNP------NADIMTQNEFGVWEIFLPNNADGS 252 (837)
Q Consensus 194 ~~lG~~~~~~g-v~FrvWAP~A~-------~V~Lvg-------DFN~w~~------~~~~m~~~~~GvW~~~ip~~~~g~ 252 (837)
..||||+..+| |.|-.|.|.-. .|+|.. ||..-+. ...++.+.+.-+|-+ +.+...|.
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgV-v~GlraGt 104 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGV-VAGLRAGT 104 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeeh-hhccCCCC
Confidence 48999999999 89999999765 788864 2222111 113666666677744 55665554
Q ss_pred CCCCCCCEEEEEEeCCCCcccc-CCccc---eecccCCCCCCCCcEEeCCCc------cccccccC------CC-CCCCC
Q 003230 253 PPIPHGSRVKIHMDTPSGIKDS-IPAWI---KFSVQAPGEIPYNGIYYDPPE------EEKYVFQH------PQ-PKKPK 315 (837)
Q Consensus 253 ~~~~~g~~yk~~v~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~------~~-~~~~~ 315 (837)
- ..-|+.|..+-....+.... .+|-+ .|.+..| +.+||.+. +..|--+. .. +..+.
T Consensus 105 r-~q~GsfYwLry~d~~~~~~~I~DpLaySlPyGvfaP------AElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~ 177 (811)
T PF14872_consen 105 R-DQAGSFYWLRYRDQDGEVQIIRDPLAYSLPYGVFAP------AELYDLERLQRRRADLDYFEATGAADPSDGIPRVPA 177 (811)
T ss_pred c-ccccceEEEEEccCCCCeEEecccccccCcccccCh------HHhhchHhHhhhhhhHHHHHhhccccCCCCCcccCC
Confidence 3 34588998876665554311 12211 2333333 23555542 11111111 11 23457
Q ss_pred CceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHH---------------cCCCEEEEcCcccC-----------------
Q 003230 316 SLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKR---------------LGYNAVQIMAVQEH----------------- 363 (837)
Q Consensus 316 ~~~IYE~hv~~f~~~~~~Gt~~~~~~~~LdyLk~---------------LGvt~I~LmPi~e~----------------- 363 (837)
+..|-|+||+..|++ ||+.|++ .....|.+ .||++||||||-..
T Consensus 178 P~nILQiHv~TAsp~---GtlaGLT-~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~ 253 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---GTLAGLT-RIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIR 253 (811)
T ss_pred CceeEEEecCCCCCC---cchHHHH-HHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeec
Confidence 889999999999887 8999998 45555543 79999999998542
Q ss_pred --------------------------CCCCCCCCcccccc--CCCCC-CCC--HHHHHHHHHHHHH---cCCEEEEeecc
Q 003230 364 --------------------------SYYASFGYHVTNFF--APSSR-CGT--PDDLKSLIDKAHE---LGLLVLMDIVH 409 (837)
Q Consensus 364 --------------------------~~~~s~GY~v~~y~--a~~~~-~Gt--~edfk~LV~~aH~---~GI~VIlDvV~ 409 (837)
|..-+|||++.=+= +++|. ++| |+||-.||.++|. ..|+||+|+|+
T Consensus 254 ~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVy 333 (811)
T PF14872_consen 254 PEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVY 333 (811)
T ss_pred ccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeec
Confidence 11237999985432 23332 222 8999999999996 68999999999
Q ss_pred ccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCc
Q 003230 410 SHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGL 489 (837)
Q Consensus 410 NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~ 489 (837)
.|+......-++. .|+. ++.. + ..++|+.+|.||..|++.-+.=++ +|+||+|+|++...-+-
T Consensus 334 GHADNQ~~~LLn~------~flk-GPnM----Y-GQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~f---- 396 (811)
T PF14872_consen 334 GHADNQALDLLNR------RFLK-GPNM----Y-GQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFF---- 396 (811)
T ss_pred ccccchhhHhhhh------hhcc-CCcc----c-cccccccChHHHHHHHHHHHhhcc-cCCceeEecccccceee----
Confidence 9998765443331 2222 2221 2 258999999999999999999999 99999999998654221
Q ss_pred cccccCCcccccCcccChhHHHHHHHHHHHhhccCC---CeEEEEecCCCCC
Q 003230 490 QVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP---EAVSIGEDVSGMP 538 (837)
Q Consensus 490 ~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P---~~~~iaE~~~~~p 538 (837)
+..-+.....+ .||.++.+.+..+.+ -.++|-|+--.||
T Consensus 397 --------nplt~~ve~DD--~YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP 438 (811)
T PF14872_consen 397 --------NPLTGRVEYDD--AYLLAMSDVVQEIGGARRLPFTIFEDGRPWP 438 (811)
T ss_pred --------cccccccccch--HHHHHHHHHHhhccccceeEEEEecCCCcCC
Confidence 11112122222 489999999988764 3688999865555
No 42
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.65 E-value=1.9e-16 Score=199.83 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=81.8
Q ss_pred ceEEEeecCCCCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHH
Q 003230 317 LRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKA 396 (837)
Q Consensus 317 ~~IYE~hv~~f~~~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~a 396 (837)
..+|-+.... .++|.+++ ++||||++||||+|||+||+++...++|||+++||+.|+|+|||.++|++||++|
T Consensus 744 ~atyrlq~~~------~~tf~~~~-~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~a 816 (1693)
T PRK14507 744 RATYRLQFHK------DFTFADAE-AILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAAL 816 (1693)
T ss_pred ceeEEEEeCC------CCCHHHHH-HHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHH
Confidence 3466665442 48999999 6999999999999999999997555679999999999999999999999999999
Q ss_pred HHcCCEEEEeeccccccC
Q 003230 397 HELGLLVLMDIVHSHASN 414 (837)
Q Consensus 397 H~~GI~VIlDvV~NH~s~ 414 (837)
|++||+||||+|+||++.
T Consensus 817 h~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 817 KAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred HHCCCEEEEEecccccCC
Confidence 999999999999999984
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.64 E-value=6.7e-14 Score=171.91 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=75.4
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCC----CHHHHHHHHHHHHHc-CCEEEEee
Q 003230 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG----TPDDLKSLIDKAHEL-GLLVLMDI 407 (837)
Q Consensus 333 ~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~G----t~edfk~LV~~aH~~-GI~VIlDv 407 (837)
.|+|.+.. ++|+||++||||+||||||++-.. +++.|++.||+.++|.|| +.+||++||+++|++ ||+||+|+
T Consensus 128 mG~~~~w~-~~L~~ik~lGyN~IhftPI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 128 LGPLSEWE-PRLRVAKEKGYNMIHFTPLQELGG-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred cCCHHHHH-HHHHHHHHcCCCEEEeCCCccCCC-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 48998877 699999999999999999997654 468999999999999995 899999999999997 99999999
Q ss_pred ccccccCCC
Q 003230 408 VHSHASNNV 416 (837)
Q Consensus 408 V~NH~s~~~ 416 (837)
|+|||+.++
T Consensus 206 V~NHTa~ds 214 (1464)
T TIGR01531 206 VFNHTANNS 214 (1464)
T ss_pred eecccccCC
Confidence 999999976
No 44
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=5.4e-14 Score=161.10 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=75.3
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
||.... +.||||++|||.|+|+.||+..-..+.|||||+|+..|+|.+|+.+.|..||.++|++||++|+|+|+|||+.
T Consensus 17 tF~~A~-~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 17 TFADAR-ALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred CHHHHH-HhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 677766 6999999999999999999998776789999999999999999999999999999999999999999999987
Q ss_pred C
Q 003230 415 N 415 (837)
Q Consensus 415 ~ 415 (837)
.
T Consensus 96 ~ 96 (889)
T COG3280 96 G 96 (889)
T ss_pred c
Confidence 6
No 45
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.51 E-value=2.1e-14 Score=127.09 Aligned_cols=79 Identities=33% Similarity=0.682 Sum_probs=65.3
Q ss_pred cCCcEEeCC--cEEEEEeCCCcCeEEEEeecCC-CCCCccccc-cCCCceEEEEeCCCCCCCCCCCCC-CEEEEEEeCCC
Q 003230 195 KFGFIRSDT--GITYREWAPGAKSASLIGDFNN-WNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDTPS 269 (837)
Q Consensus 195 ~lG~~~~~~--gv~FrvWAP~A~~V~LvgDFN~-w~~~~~~m~-~~~~GvW~~~ip~~~~g~~~~~~g-~~yk~~v~~~~ 269 (837)
+||+|+.++ +++||+|||+|++|+|+++|++ |....++|. +.+.|+|+++||.. +++| ..|+|+|+...
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~------~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGD------LPPGGYYYKYRIDGDD 74 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGC------GTTTT-EEEEEEEETT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCC------cCCCCEEEEEEEEeCC
Confidence 699999986 8999999999999999999999 888889999 68999999999953 4566 59999999887
Q ss_pred C-ccccCCccc
Q 003230 270 G-IKDSIPAWI 279 (837)
Q Consensus 270 ~-~~~~~~~~~ 279 (837)
| ....+||||
T Consensus 75 g~~~~~~DPYA 85 (85)
T PF02922_consen 75 GETPEVVDPYA 85 (85)
T ss_dssp TEEEEET-TT-
T ss_pred CcEEEEeCCCC
Confidence 5 346778875
No 46
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.46 E-value=1.6e-13 Score=125.51 Aligned_cols=92 Identities=20% Similarity=0.334 Sum_probs=76.0
Q ss_pred CCcEEeCCcEEEEEeCCCcCeEEEEeecCCCCC----CccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-CC
Q 003230 196 FGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-SG 270 (837)
Q Consensus 196 lG~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~~----~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~-~~ 270 (837)
||+++.+++++|+||||+|++|.|++ |++|+. ..++|.+.++|+|+++|++.. +|..|+|+++++ +.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~-------~g~~Y~y~i~~~~~~ 72 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDL-------EGYYYLYEVKVYKGE 72 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCcc-------CCcEEEEEEEEeceE
Confidence 79999999999999999999999999 888862 346899989999999999754 467999999887 33
Q ss_pred ccccCCccceecccCCCCCCCCcEEeCCC
Q 003230 271 IKDSIPAWIKFSVQAPGEIPYNGIYYDPP 299 (837)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 299 (837)
.....|||++.+..+.. +++++|++
T Consensus 73 ~~~~~DPyA~~~~~~~~----~s~i~d~~ 97 (100)
T cd02860 73 TNEVVDPYAKALSANGE----RSVDLDDK 97 (100)
T ss_pred EEEEcCcccEeEeeCCC----ceEECChH
Confidence 45788999988765433 57888875
No 47
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.41 E-value=9e-13 Score=121.49 Aligned_cols=92 Identities=32% Similarity=0.651 Sum_probs=76.4
Q ss_pred hhcccccCCcEEeC----CcEEEEEeCCCcCeEEEEeecCCCCCCccccccCC-CceEEEEeCCCCCCCCCCCCCCEEEE
Q 003230 189 FSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNE-FGVWEIFLPNNADGSPPIPHGSRVKI 263 (837)
Q Consensus 189 f~~~y~~lG~~~~~----~gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~-~GvW~~~ip~~~~g~~~~~~g~~yk~ 263 (837)
++..|+.||+|+.+ ++++||+|||+|++|+|+++||+|+....+|.+.+ .|+|++++|.. ++|..|+|
T Consensus 3 ~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~-------~~~~~Y~~ 75 (106)
T cd02855 3 HERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGL-------GEGELYKY 75 (106)
T ss_pred chhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCC-------CCCCEEEE
Confidence 45667899999988 88999999999999999999999977677999876 99999999864 34567999
Q ss_pred EEeCCCC-ccccCCccceecccCCC
Q 003230 264 HMDTPSG-IKDSIPAWIKFSVQAPG 287 (837)
Q Consensus 264 ~v~~~~~-~~~~~~~~~~~~~~~~~ 287 (837)
++..+++ .....|||++.+.+.+.
T Consensus 76 ~v~~~~g~~~~~~DPYa~~~~~~~~ 100 (106)
T cd02855 76 EILGADGHLPLKADPYAFYSELRPG 100 (106)
T ss_pred EEECCCCCEEEeeCCCceeeEeCCC
Confidence 9987643 45778999988877654
No 48
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.32 E-value=4.6e-12 Score=116.60 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=65.3
Q ss_pred cCCcEEeCCcEEEEEeCCCcCeEEEEeecCCCC-CCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-----
Q 003230 195 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP----- 268 (837)
Q Consensus 195 ~lG~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~-~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~----- 268 (837)
+||+++.++|++|+||||+|++|.|++ |+++. ....+|.+.++|+|+++|++.. +|..|+|+|+++
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~-------~g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIK-------AGQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCC-------CCCEEEEEECCccCccc
Confidence 589999999999999999999999999 66664 4457899888999999999754 467999999882
Q ss_pred ----CCccccCCccceecc
Q 003230 269 ----SGIKDSIPAWIKFSV 283 (837)
Q Consensus 269 ----~~~~~~~~~~~~~~~ 283 (837)
+.....+|||++.+.
T Consensus 73 ~~~~~~~~~~~DPYA~~~~ 91 (103)
T cd02856 73 GLRFNPAKLLLDPYARALD 91 (103)
T ss_pred CcccCCCeEEecCCcceEc
Confidence 222456778877654
No 49
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=99.31 E-value=3.5e-12 Score=115.41 Aligned_cols=89 Identities=36% Similarity=0.613 Sum_probs=72.2
Q ss_pred EEEeecCCCcEEEEEcC-----cEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcceeccccccC
Q 003230 733 YVSRKDEGDRVIVFERG-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYD 807 (837)
Q Consensus 733 ~i~~~~~~~~Vlaf~R~-----~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~ 807 (837)
|+.+.+.+++|+||.|. .+|||+||++.+.+.+|++++|.+|+|+++||||+..|||.+... ...+. .
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~~~-~~~v~---~--- 73 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGKGN-SGEVT---V--- 73 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSCSE-TSEEE---E---
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCccccc-CceEE---E---
Confidence 67888899999999993 399999999754788999999999999999999999999997633 22222 1
Q ss_pred CCCeEEEEEEcCceEEEEEEc
Q 003230 808 DQPHSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 808 ~~~~~l~l~Lp~~s~~Vl~~~ 828 (837)
...+.++|+|||++++||+..
T Consensus 74 ~~~g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 74 DSNGRITVTLPPYSALVLKLK 94 (95)
T ss_dssp ETTSEEEEEESTTEEEEEEEE
T ss_pred eeCCEEEEEECCCEEEEEEEc
Confidence 123349999999999999874
No 50
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.24 E-value=4.2e-11 Score=106.27 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=65.5
Q ss_pred CcEEeC-CcEEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccC
Q 003230 197 GFIRSD-TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSI 275 (837)
Q Consensus 197 G~~~~~-~gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~~~~~~ 275 (837)
|+++.+ ++++|+||||+|++|.|++. + + ...+|.+.+.|+|++++++. . |..|+|+++. .....
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~-~-~--~~~~m~~~~~G~W~~~v~~~-~-------g~~Y~y~v~~---~~~~~ 65 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLD-D-G--EEIPMQRDGDGWFEAEVPGA-A-------GTRYRYRLDD---GTPVP 65 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEec-C-C--CcccCccCCCcEEEEEeCCC-C-------CCeEEEEECC---CcCCC
Confidence 788887 79999999999999999983 2 3 35789999999999999975 4 5689999973 25678
Q ss_pred CccceecccCCCCCCCCcEEeCC
Q 003230 276 PAWIKFSVQAPGEIPYNGIYYDP 298 (837)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~d~ 298 (837)
|||+++....... .|+++||
T Consensus 66 DP~a~~~~~~~~~---~s~v~~~ 85 (85)
T cd02853 66 DPASRFQPEGVHG---PSQVVDP 85 (85)
T ss_pred CCccccCCCCCCC---CeEeeCc
Confidence 9999875433222 5788774
No 51
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.08 E-value=4.3e-10 Score=106.28 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=61.2
Q ss_pred CcEEeCCcEEEEEeCCCcCeEEEEeecCCCCC----CccccccCC---CceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-
Q 003230 197 GFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNE---FGVWEIFLPNNADGSPPIPHGSRVKIHMDTP- 268 (837)
Q Consensus 197 G~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~~----~~~~m~~~~---~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~- 268 (837)
|++++++|++|+||||+|++|.|++ |++|+. ...+|.+.+ +|+|+++|++.. +|..|+|+|+++
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~-------~g~~Y~y~v~g~~ 72 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLK-------PGQLYGYRVDGPF 72 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCC-------CCCEEEEEECCCC
Confidence 7899999999999999999999999 888752 135787654 699999999754 466999999862
Q ss_pred ---CCc-----cccCCccceecc
Q 003230 269 ---SGI-----KDSIPAWIKFSV 283 (837)
Q Consensus 269 ---~~~-----~~~~~~~~~~~~ 283 (837)
.|. ...+|||++...
T Consensus 73 ~p~~g~~~~~~~~~~DPYA~a~~ 95 (119)
T cd02852 73 EPEQGHRFDPSKVLLDPYAKAVS 95 (119)
T ss_pred CCCcccccCCCcEEECCCcCeEc
Confidence 222 126788887653
No 52
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.02 E-value=3e-10 Score=138.28 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=70.6
Q ss_pred hhhcccccCCcEEeCCcEEEEEeCCCcCeEEEEeecCCCCCCccccccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003230 188 AFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (837)
Q Consensus 188 ~f~~~y~~lG~~~~~~gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~-~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~ 266 (837)
...+.|+.||+|....|++|+||||+|++|+|+||||+ +..++|.+. +.|+|+++|| ... |..|||+|.
T Consensus 13 ~~~~~~~~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~--~~~~~m~~~~~~G~w~~~ip-~~~-------g~~YKy~i~ 82 (726)
T PRK05402 13 RHHDPFSVLGPHPTGAGLVVRALLPGAEEVWVILPGGG--RKLAELERLHPRGLFAGVLP-RKG-------PFDYRLRVT 82 (726)
T ss_pred ccCCHHHhcCCCCCCCcEEEEEECCCCeEEEEEeecCC--CccccceEcCCCceEEEEec-CCC-------CCCeEEEEE
Confidence 67788999999998889999999999999999999995 667899864 6899999999 655 558999998
Q ss_pred CCCCc-cccCCccce
Q 003230 267 TPSGI-KDSIPAWIK 280 (837)
Q Consensus 267 ~~~~~-~~~~~~~~~ 280 (837)
+ +|. ....|||+.
T Consensus 83 ~-~g~~~~k~DPyaf 96 (726)
T PRK05402 83 W-GGGEQLIDDPYRF 96 (726)
T ss_pred e-CCceeEecccccc
Confidence 8 664 567888885
No 53
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.88 E-value=4.6e-09 Score=93.21 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=48.7
Q ss_pred CcEEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCC-CEEEEEEeCCCCccccCCccce
Q 003230 203 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDTPSGIKDSIPAWIK 280 (837)
Q Consensus 203 ~gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g-~~yk~~v~~~~~~~~~~~~~~~ 280 (837)
+.++|++|||.|++|+|+++||+|. .++|++.++|+|+++++.... | ..|+|.+++ ....||+++
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~--~~~m~~~~~G~W~~~v~~l~~-------g~Y~Y~~~vdg----~~~~DP~s~ 71 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAG--SHPMTKDEAGVWSVTTGPLAP-------GIYTYSFLVDG----VRVIDPSNP 71 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCc--cEeCeECCCeEEEEEECCCCC-------cEEEEEEEECC----eEecCCCCC
Confidence 4599999999999999999998654 579999999999999964322 2 367777654 333455443
No 54
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.80 E-value=1.2e-08 Score=89.86 Aligned_cols=55 Identities=31% Similarity=0.500 Sum_probs=46.4
Q ss_pred cEEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003230 204 GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 204 gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~ 267 (837)
.++|++|||.|++|+|+|+||+|+ ..+|++.+.|+|+++++. ..|. ..|||.+++
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~l-~~G~------y~Ykf~vdg 57 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVEL-RPGR------YEYKFVVDG 57 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEeC-CCCc------EEEEEEECC
Confidence 489999999999999999999997 569999888999999973 3332 289999864
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.55 E-value=6.4e-07 Score=98.58 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=103.2
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccC-CCCCCCCCccccccCCCCCCC--CHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~-~~~~s~GY~v~~y~a~~~~~G--t~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-..+. +.|+.|+++|+|+|.+-=-... ..|.| -+.+...+......+ +-|=|+.||++||++||.|.-=+.++.
T Consensus 17 ~~~~~~-~~l~~l~~~~~N~V~~qVr~~gda~Y~S-~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 17 SKEQID-EMLDDLKSAGFNAVFVQVRPRGDALYPS-DIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEEeCcEEEecc-cccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 344555 7999999999999986321111 11111 111111111111111 257899999999999999998875543
Q ss_pred ccCCCcccccCCCCCCCCccccCCCCCccc-----CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccc
Q 003230 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWM-----WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 486 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~-----w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~ 486 (837)
..... .......+.++.....+.... -+..-||-++||||+||++.++-.++.|.|||+.||-.-.. +..
T Consensus 95 ~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp-~~~ 169 (311)
T PF02638_consen 95 NAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYP-PPS 169 (311)
T ss_pred CCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccccc-ccc
Confidence 32211 000011112211111110000 12245899999999999999999999999999999943211 111
Q ss_pred cCccccccCCcccccC-----cccC-------hhH-HHHHHHHHHHhhccCCCeEEE
Q 003230 487 HGLQVAFTGNYSEYFG-----FATD-------VDA-VVYLMLVNDMIHGLYPEAVSI 530 (837)
Q Consensus 487 ~g~~~~f~~~~~~~~g-----~~~d-------~~~-~~fl~~~~~~v~~~~P~~~~i 530 (837)
.|....-...|..+.| ...+ .+. -.|++++.+.|++++|++.+=
T Consensus 170 ~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~s 226 (311)
T PF02638_consen 170 FGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFS 226 (311)
T ss_pred CCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 1211100011223322 1111 111 278899999999999986553
No 56
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.50 E-value=4.8e-07 Score=78.79 Aligned_cols=61 Identities=34% Similarity=0.483 Sum_probs=51.2
Q ss_pred CcEEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003230 203 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 203 ~gv~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~ 270 (837)
++++|++|||.|++|.|+++|++| ...++|.+.+.|+|++.|+... +++..|+|++++..+
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~------~~~~~Y~~~v~~~~~ 64 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS------PGKYQYKYVLDGGKG 64 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCC------CCCeEEEEEEeCCCC
Confidence 579999999999999999999885 3468999988999999998643 257799999986543
No 57
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.46 E-value=2.9e-07 Score=103.34 Aligned_cols=83 Identities=23% Similarity=0.402 Sum_probs=72.6
Q ss_pred CCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCC------HHHHHHHHHHHH-HcCCEEEE
Q 003230 333 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT------PDDLKSLIDKAH-ELGLLVLM 405 (837)
Q Consensus 333 ~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt------~edfk~LV~~aH-~~GI~VIl 405 (837)
.|.|.+-. ++|+.++++|||.|+++|+++-... +.-|.+.|...+++.|.. .+++++||.+++ +.||.+|.
T Consensus 18 ~G~~~~W~-~~l~~~~~~GYNmIHftPlq~~G~S-~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~ 95 (423)
T PF14701_consen 18 MGPFSDWE-KHLKVISEKGYNMIHFTPLQERGES-NSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMT 95 (423)
T ss_pred cCCHhHHH-HHHHHHHHcCCcEEEecccccCCCC-CCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEE
Confidence 37777776 6999999999999999999997653 457999999999999875 379999999995 79999999
Q ss_pred eeccccccCCCc
Q 003230 406 DIVHSHASNNVL 417 (837)
Q Consensus 406 DvV~NH~s~~~~ 417 (837)
|||+|||+.++.
T Consensus 96 DvV~NHtA~nS~ 107 (423)
T PF14701_consen 96 DVVLNHTANNSP 107 (423)
T ss_pred EEeeccCcCCCh
Confidence 999999999873
No 58
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.38 E-value=1.7e-06 Score=77.11 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCCCCcE-EEEe-ecCCCcEEEEEc----CcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCC
Q 003230 713 FDRAMQHLEEKYGFMTSEHQ-YVSR-KDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPL 786 (837)
Q Consensus 713 f~r~Li~LR~~~~~L~~g~~-~i~~-~~~~~~Vlaf~R----~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~ 786 (837)
|||+||+||+++|+|+.+.. .+.. ....+.++++.| +.++|++||++ ++ .++. ....++.++.++...
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~-~~---~~~~--~~~~~~~l~~s~~~~ 74 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSD-EP---VTVP--EGPWGEVLFSSEPAR 74 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SS-S----EEEE--TSCCEEEEEECSCSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCC-Cc---EEcc--CCCCCeEEEcCCCcc
Confidence 79999999999999998833 3322 134566888888 47999999995 22 3333 445677777766543
Q ss_pred cCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEE
Q 003230 787 FGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVY 825 (837)
Q Consensus 787 ~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl 825 (837)
+++ .++|||++++||
T Consensus 75 ~~~------------------------~~~L~p~~~~v~ 89 (89)
T PF11941_consen 75 AGG------------------------AGTLPPWSVVVL 89 (89)
T ss_dssp E--------------------------EEEE-TTEEEEE
T ss_pred ccc------------------------CceECCCEEEEC
Confidence 222 589999999986
No 59
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=4.7e-05 Score=89.87 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=68.5
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCC------CHHHHHHHHHHHHH-cCCEEEEe
Q 003230 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG------TPDDLKSLIDKAHE-LGLLVLMD 406 (837)
Q Consensus 334 Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~G------t~edfk~LV~~aH~-~GI~VIlD 406 (837)
|-+.+-. .+|.-+|+-|||.|+++|++|-.. ++.-|...|-..+++.|. +.+|.++||+.+|+ -||--|-|
T Consensus 139 Gpl~eWe-prL~va~e~gYNmIHfTPlqelG~-S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 139 GPLDEWE-PRLRVAKESGYNMIHFTPLQELGL-SRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred CChhhhh-HHHHHHHHcCCceEeeeeHHHhcc-CCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 4444444 689999999999999999999765 345688888888888887 69999999999996 69999999
Q ss_pred eccccccCCC
Q 003230 407 IVHSHASNNV 416 (837)
Q Consensus 407 vV~NH~s~~~ 416 (837)
||+||++.++
T Consensus 217 vV~NHtAnns 226 (1521)
T KOG3625|consen 217 VVYNHTANNS 226 (1521)
T ss_pred hhhhccccCC
Confidence 9999999874
No 60
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.30 E-value=3.6e-06 Score=80.90 Aligned_cols=125 Identities=25% Similarity=0.249 Sum_probs=82.4
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc--c-ccCCCcc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS--H-ASNNVLD 418 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N--H-~s~~~~~ 418 (837)
+.+++||++|+|+|.+..=-.+ .|-|-|+.-...+|.++ .+-|+++|++||++||+|+.=+-++ . +...|++
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~----g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHG----GYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEccccc----EEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCc
Confidence 5789999999999987543211 13366777777788887 7889999999999999999655444 1 2333433
Q ss_pred ccc-CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 003230 419 GLN-MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 419 ~~~-~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
+.. .-+|+. ........+.|-..++| . ..+++++..++--++.|.+|||=||.
T Consensus 79 W~~~~~~G~~----~~~~~~~~~~~~~~c~n--s-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 79 WFVRDADGRP----MRGERFGYPGWYTCCLN--S-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred eeeECCCCCC----cCCCCcCCCCceecCCC--c-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 322 122321 00001111224444555 3 45689999999999999999998883
No 61
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.26 E-value=4.3e-05 Score=89.09 Aligned_cols=238 Identities=15% Similarity=0.219 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHcCCEEEEeecc--ccccCCCcccccCC-----------CCCCCCccccCCCCCcccCCCCCCCCCCHH
Q 003230 387 DDLKSLIDKAHELGLLVLMDIVH--SHASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 453 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~--NH~s~~~~~~~~~f-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~~e 453 (837)
++++++.+.||++||++|.|+.+ ++-|.+.......| -|.+|.+|... |. .||.+.+|+..-+
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~--GQ--~WG~P~y~w~~l~ 273 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSET--GQ--LWGNPVYNWDALR 273 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcc--cC--cCCCCCcCHHHHH
Confidence 34556677799999999999986 33333321111111 35666777543 32 4788887764211
Q ss_pred H--HHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEE
Q 003230 454 V--LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 454 V--~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~ia 531 (837)
- -+..++-+++-++ .+|.+|+|.+..+... .-++.+ .-....|.....+..+++..+...+ +++.+||
T Consensus 274 ~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-W~IP~~---~~~a~~G~~v~~p~~~l~~~l~~e~----~~~~vig 343 (497)
T PRK14508 274 KDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-WEIPAG---EKTAINGRWVPGPGKDLFEAVKEEL----GDLPIIA 343 (497)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCC---CCCCCCCeeecCCHHHHHHHHHHHh----CCCCEEE
Confidence 1 1235555555555 7999999987543211 001110 0000112112223445555555444 6789999
Q ss_pred ecCCCCCcceecccc-CCc-ccchhhhhhHHHHHHHHHhhcchhhhhhhhHHhhccCcccccceecccCcccccccccch
Q 003230 532 EDVSGMPTFCIPVQD-GGV-GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 609 (837)
Q Consensus 532 E~~~~~p~~~~~~~~-ggl-gfD~~~~~~~~d~~~~~lk~~~~~~~~~~l~~~l~~~~~~~~~v~ylenHD~~r~g~~~~ 609 (837)
|+.+-.|...+.... -|+ |+.-- .+.... .... ......++..+|.|+.+||++++.
T Consensus 344 EDLG~vp~~V~~~l~~~gi~g~~Vl-----------~f~~~~---~~~~---~~~p~~~~~~~v~~~~THD~~Tl~---- 402 (497)
T PRK14508 344 EDLGVITPDVEELRDRFGFPGMKIL-----------QFAFDG---DSDN---PYLPHNYPRNSVVYTGTHDNDTTV---- 402 (497)
T ss_pred eECCCCCHHHHHHHHHcCCCccEEE-----------EecCCC---CCCC---CCCCcCCCCCeEEECCCCCCHHHH----
Confidence 998654443322221 111 11100 000000 0000 011124677899999999998762
Q ss_pred hhhc-cChhH---HHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCceEeecccccCCCC
Q 003230 610 AFWL-MDKDM---YDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE 666 (837)
Q Consensus 610 ~~~~-~~~~~---~~~~~~~~~~~~~~~~g~al~kla~~l~ltlpG~p~L~y~G~E~G~~e 666 (837)
..|. .+.+. ...+.+... . ...+..+.-+++..+-.=+|+-+-|=+|+.+
T Consensus 403 gWw~~~~~~~~~~~~~~l~~~~-~------~~~~~~~~~~~~~S~s~l~i~~lqDllgl~~ 456 (497)
T PRK14508 403 GWWESLDPEERKRVADYLGRSS-E------EEIHWALIRLALASVADLAILPMQDLLGLGS 456 (497)
T ss_pred HHHhCCCHHHHHHHHHHhccCC-c------hhHHHHHHHHHhcCCchheeeeHHHHhCCCC
Confidence 2232 12111 111221111 0 2233444455666776657766777677753
No 62
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.99 E-value=2.1e-05 Score=92.17 Aligned_cols=193 Identities=18% Similarity=0.261 Sum_probs=98.8
Q ss_pred CCCCH-HhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCC-------------------------
Q 003230 332 IINTY-ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT------------------------- 385 (837)
Q Consensus 332 ~~Gt~-~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt------------------------- 385 (837)
++|+| .++. ..++.+++.|+..+||+|+.......++.|.+.+=|+.+|-|=+
T Consensus 13 GIGDfg~dl~-~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e~~~~~~~~~~~~~~~~~~~ 91 (496)
T PF02446_consen 13 GIGDFGDDLY-QFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPEFGLLDEAEEIEELAELRDA 91 (496)
T ss_dssp SS--SSHHHH-HHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHHTTSS-----GGGS-S---S
T ss_pred ceecHHHHHH-HHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhhccccchhhhhhhccccccc
Confidence 78999 7777 69999999999999999999876656668888888877755521
Q ss_pred --------------------------------------------------------------------------------
Q 003230 386 -------------------------------------------------------------------------------- 385 (837)
Q Consensus 386 -------------------------------------------------------------------------------- 385 (837)
T Consensus 92 ~~VDY~~v~~~K~~~L~~af~~f~~~~~~~~~f~~F~~~~~~wL~~yA~f~al~~~~~~~~w~~WP~~~~~~~~~~~l~~ 171 (496)
T PF02446_consen 92 DRVDYEAVAALKRRALRKAFERFKEQAERREEFEAFCEQNGEWLEDYALFCALKEKFGGAPWREWPEEELRDRDSEALAA 171 (496)
T ss_dssp SB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSGGGS--HHHHTT-HHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhcchhHhHHHHHHHHHHhCCCCcccCCHHHHhhhcHHHHHH
Confidence
Q ss_pred -------------------HHHHHHHHHHHHHcCCEEEEeeccc--cccCCCcccccCC-----CCCCCCccccCCCCCc
Q 003230 386 -------------------PDDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLNMF-----DGTDGHYFHSGSRGYH 439 (837)
Q Consensus 386 -------------------~edfk~LV~~aH~~GI~VIlDvV~N--H~s~~~~~~~~~f-----dg~~~~yf~~~~~g~~ 439 (837)
-++++++.+.|+++||++|.|+.+- +-|.+.......| -|.+|.+|.. .|.
T Consensus 172 ~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~fs~--~GQ- 248 (496)
T PF02446_consen 172 FREEHADEIEFHKFLQWLAFKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYFSP--TGQ- 248 (496)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSSSS--S-E-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCCCc--ccc-
Confidence 0678888889999999999999863 3333221111122 2566777753 233
Q ss_pred ccCCCCCCCCCCHHH--HHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHH
Q 003230 440 WMWDSRLFNYGSWEV--LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVN 517 (837)
Q Consensus 440 ~~w~~~~ln~~~~eV--~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~ 517 (837)
.||.+.+|+..-.- -+..++-+++-++ .+|++|+|.+..+... .-++. +......|........+++..+.
T Consensus 249 -~WG~P~y~w~~l~~~gy~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~-W~IP~---~~~~a~~G~~~~~p~~~ll~~l~ 321 (496)
T PF02446_consen 249 -NWGNPPYNWDALKEDGYRWWIDRLRANMR--LFDALRIDHFRGFFRY-WWIPA---GGETAIDGAWVRYPGEDLLAILA 321 (496)
T ss_dssp -EEEEE-B-HHHHHHTTTHHHHHHHHHHHC--C-SEEEEETGGGGTEE-EEEET---T-SSSTT-EEEE--HHHHHHHHH
T ss_pred -cCCCCCcCHHHHHHcCCHHHHHHHHHHHH--hCCchHHHHHHHHHhe-eEecC---CCCCCCCceeecchHHHHHHHHH
Confidence 46667766542111 1234444444444 8999999988654211 01111 01111112222233445666666
Q ss_pred HHhhccCCCeEEEEecCCCCC
Q 003230 518 DMIHGLYPEAVSIGEDVSGMP 538 (837)
Q Consensus 518 ~~v~~~~P~~~~iaE~~~~~p 538 (837)
...+. ++.+|||+.+-.|
T Consensus 322 ~e~~r---~~~vigEDLG~vp 339 (496)
T PF02446_consen 322 LESGR---DCLVIGEDLGTVP 339 (496)
T ss_dssp HHHS----S-EEEE--TSS--
T ss_pred HHcCC---CCcEEEeecCCCc
Confidence 55543 7999999985544
No 63
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.00011 Score=82.85 Aligned_cols=178 Identities=19% Similarity=0.246 Sum_probs=105.3
Q ss_pred HHhhHhhhhhHHHHcCCCEEEEcCcccC-CCCCC-----CCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003230 336 YANFRDDVLPRIKRLGYNAVQIMAVQEH-SYYAS-----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt~I~LmPi~e~-~~~~s-----~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
=.++. +.|+.|+.||+|+|+.-=.-.. ..|.| .++. +..+.+++ +-|=|..+|++||++||+|+-=+-+
T Consensus 63 ~~el~-~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~-~~~~~~~~---g~DpLa~~I~~AHkr~l~v~aWf~~ 137 (418)
T COG1649 63 RQELK-DILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL-PGVLGVDP---GYDPLAFVIAEAHKRGLEVHAWFNP 137 (418)
T ss_pred HHHHH-HHHHHHHHcCCceeEEEEecCccccccccccccccCc-CcccCCCC---CCChHHHHHHHHHhcCCeeeechhh
Confidence 34666 5899999999999985422211 01111 2222 11122222 3477999999999999999988887
Q ss_pred ccccCCCcccccCCCCCCCCccccCCCC----CcccC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccc
Q 003230 410 SHASNNVLDGLNMFDGTDGHYFHSGSRG----YHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMY 484 (837)
Q Consensus 410 NH~s~~~~~~~~~fdg~~~~yf~~~~~g----~~~~w-~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~ 484 (837)
--++........ ..+.+......+ .+..| ...-||-++|+||++|.+.+.--+..|.|||.-||-.-.+
T Consensus 138 ~~~a~~~s~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~-- 211 (418)
T COG1649 138 YRMAPPTSPLTK----RHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYY-- 211 (418)
T ss_pred cccCCCCChhHh----hCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecc--
Confidence 777664311110 001111111000 01112 3356899999999999999999999999999999975331
Q ss_pred cccCccccccCC-----c--ccc-cCcccChh---------HHHHHHHHHHHhhccCCCeEE
Q 003230 485 THHGLQVAFTGN-----Y--SEY-FGFATDVD---------AVVYLMLVNDMIHGLYPEAVS 529 (837)
Q Consensus 485 ~~~g~~~~f~~~-----~--~~~-~g~~~d~~---------~~~fl~~~~~~v~~~~P~~~~ 529 (837)
+..|..+ + .+. -+.-.+.+ .-.|++.++..|++.+|++.+
T Consensus 212 -----~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~ 268 (418)
T COG1649 212 -----PIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKF 268 (418)
T ss_pred -----cCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEE
Confidence 1111111 0 010 00111222 126789999999999998665
No 64
>PLN02950 4-alpha-glucanotransferase
Probab=97.91 E-value=0.00086 Score=83.35 Aligned_cols=192 Identities=13% Similarity=0.131 Sum_probs=99.0
Q ss_pred CcceecCCCCcchHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccCCcEEe---C--CcEEEEEeCCC---cCeEEEE
Q 003230 149 QNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRS---D--TGITYREWAPG---AKSASLI 220 (837)
Q Consensus 149 ~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~---~--~gv~FrvWAP~---A~~V~Lv 220 (837)
..+.-.|-|-..-...+-+|-. |++. |+...-++ +--.++++... + -.++|++=+|+ -++|.|+
T Consensus 102 ~~~~i~D~W~~~~~~~~~~~s~-f~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~v~V~F~v~~~~~~~Gq~v~Vv 173 (909)
T PLN02950 102 ELVELHDLWQKSGPEALFFRSA-FKDV---IFRHSWGV----NTERPLGALNKPPAPDEIVVRFKIACPRLEEGTSVYVT 173 (909)
T ss_pred ceEEEEEEecCCchhhhhhHHH-Hhhh---hccccccc----ccccccccccccCCCCceeEEEEEecCccCCCCeEEEE
Confidence 3455577787655555555442 4332 22211000 00124444432 2 23899999985 4789999
Q ss_pred ee---cCCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCccceecccCCCCCCCCcEEe
Q 003230 221 GD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYY 296 (837)
Q Consensus 221 gD---FN~w~~~-~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (837)
|+ +.+|++. +.+|.......|++.+.-.. +. -...|||.+...+|....-. -.......+........++
T Consensus 174 Gs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~-~~----~~~EYKyv~~~~~g~v~WE~-g~NR~~~~p~~~~~~~~~~ 247 (909)
T PLN02950 174 GSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPK-SD----FPIKYKYALQTAEGLVSLEL-GVNRELSLDSSSGKPPSYI 247 (909)
T ss_pred echhhcCCCCcccccccccCCCCcEEEEEEecC-CC----ceEEEEEEEEcCCCceEEee-CCCceeecCcccCCceEEE
Confidence 85 4579864 45787777899999986321 11 12489998876554321000 0001111111111111111
Q ss_pred -CCCccccccccCCCCCCCCCceEEEeecCCCCC--CCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccC
Q 003230 297 -DPPEEEKYVFQHPQPKKPKSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH 363 (837)
Q Consensus 297 -d~~~~~~~~~~~~~~~~~~~~~IYE~hv~~f~~--~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~ 363 (837)
.+. ..++. +.....-++ +|+-+-.. +-++|+|.++. +.++.+++.|.+.|||+|+.+.
T Consensus 248 ~~~~----~~~~~--~~~R~~Gi~--~~l~SLrS~~s~GIGDf~dl~-~~id~~a~~G~~~~QilPl~~t 308 (909)
T PLN02950 248 VASD----GAFRE--MPWRGAGVA--VPVFSIRSEEDVGVGEFLDLK-LLVDWAVKSGLHLVQLLPVNDT 308 (909)
T ss_pred eccc----ccccC--CCccceEEE--EecccCCCCCCCCeeCHHHHH-HHHHHHHHcCCCEEEECCCCCC
Confidence 110 01111 111111111 12222111 23789999888 6999999999999999999653
No 65
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.89 E-value=3.1e-05 Score=67.81 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=43.3
Q ss_pred EEEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003230 205 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 205 v~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~ 267 (837)
++|+..+ .|++|+|+|+||+|+. ..||.+...| |++.++- ..|. ..|||.|++
T Consensus 4 v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~L-~~g~------y~YkF~Vdg 56 (79)
T cd02859 4 TTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLRL-PPGK------YQYKFIVDG 56 (79)
T ss_pred EEEEEcC-CCcEEEEEEEcCCCCc-cccceECCCC-cEEEEEc-CCCC------EEEEEEECC
Confidence 7898888 8999999999999987 6899998877 9999863 2332 379998864
No 66
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.87 E-value=2.6e-05 Score=90.34 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=62.8
Q ss_pred CCceEEEeecCCCCC---CCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCC-------CCCccccccCC----C
Q 003230 315 KSLRIYEAHVGMSST---EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYAS-------FGYHVTNFFAP----S 380 (837)
Q Consensus 315 ~~~~IYE~hv~~f~~---~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s-------~GY~v~~y~a~----~ 380 (837)
..-+|||-+-- |.. .+.--+..-|+ +-.+-+|++|||..||-|-+-+...++ -||.-+|-|.+ .
T Consensus 563 DSqvIYEgFSN-FQ~~~t~~~eytN~~IA-~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~p 640 (809)
T PF02324_consen 563 DSQVIYEGFSN-FQDFPTTPSEYTNVVIA-KNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKP 640 (809)
T ss_dssp HT-EEEE---T-TB---SSGGGSHHHHHH-HTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-
T ss_pred hcchhhccccc-cccCCCChHHHHHHHHH-HhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCC
Confidence 35689996532 222 22224556666 688999999999999999888766655 49999998876 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 003230 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
..|||.+||+.-|+++|+.||+||.|||++.+..
T Consensus 641 tKYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 641 TKYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 7899999999999999999999999999987754
No 67
>PLN02635 disproportionating enzyme
Probab=97.80 E-value=0.00019 Score=84.06 Aligned_cols=138 Identities=18% Similarity=0.254 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCEEEEeecc--ccccCCCcccccCC-----------CCCCCCccccCCCCCcccCCCCCCCCCCH-
Q 003230 387 DDLKSLIDKAHELGLLVLMDIVH--SHASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSW- 452 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~--NH~s~~~~~~~~~f-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~~- 452 (837)
++++++-+.||++||++|-|+.+ +|-|.+.......| -|.+|.||... | -.||.+.+|+..-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~--G--Q~WG~P~y~w~~l~ 299 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET--G--QLWGSPLYDWKAMA 299 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc--c--ccCCCcCcCHHHHH
Confidence 45666788899999999999994 55555432111112 25667777543 3 2478888776421
Q ss_pred -HHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEE
Q 003230 453 -EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 453 -eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~ia 531 (837)
.--+..++-+++=++ .+|.+|+|.+..+... .-++.+ .-....|.....+..+++. .+.+..+++.+||
T Consensus 300 ~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~-W~IP~g---~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~vIa 369 (538)
T PLN02635 300 KDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGY-WAVPAD---AKTAMNGRWKVGPGKSFFD----AIKKAVGKIDIIA 369 (538)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhhee-eeccCC---CCCCCCCeeeeCCHHHHHH----HHHHHcCCCCEEE
Confidence 111234555555555 7999999987543210 001100 0001112222233344443 3455556899999
Q ss_pred ecCCCCC
Q 003230 532 EDVSGMP 538 (837)
Q Consensus 532 E~~~~~p 538 (837)
|+.+--|
T Consensus 370 EDLG~I~ 376 (538)
T PLN02635 370 EDLGVIT 376 (538)
T ss_pred eeCCCCC
Confidence 9985443
No 68
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.71 E-value=0.0025 Score=81.99 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCEE--EEeeccc--cccCCCccc-----ccCCCCCCCCccccCCCCCcccCCCCCCCCCCHH--HH
Q 003230 387 DDLKSLIDKAHELGLLV--LMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 455 (837)
Q Consensus 387 edfk~LV~~aH~~GI~V--IlDvV~N--H~s~~~~~~-----~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~e--V~ 455 (837)
++++++-+.|+++||+| |-|+.+. +-|.+.... +..--|.+|.+|... |+ .|+.+.+|+..-. --
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f~l~~~~GaPPD~fs~~--GQ--~WG~P~y~w~~l~~~gy 1007 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCFALDVSIGAPPDYFNPE--GQ--NWGLPPYDPRALRRDGY 1007 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHhcCCCccCCCCCcCCcc--cc--cCCCcCcCHHHHHhcCc
Confidence 45667788899999999 9999863 333332111 112236777787543 33 4788877764221 11
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCC
Q 003230 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (837)
Q Consensus 456 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~ 535 (837)
+..++-++.-++ ++|++|+|.+..+... .-++.+-+ ...|.....+..+++..+...... -++.+|||+.+
T Consensus 1008 ~~w~~rlr~~~~--~~~~lRIDH~~G~~r~-W~IP~~~~----a~~G~~v~~P~~~l~~~l~~e~~r--~~~~vIgEDLG 1078 (1221)
T PRK14510 1008 RWFIERIRANMR--HAGALRIDHVRGLERL-FEVPQGAS----AKEGAYLKGPGEELFGQVALESQR--AQCPVIGEDLG 1078 (1221)
T ss_pred HHHHHHHHHHHH--hCCeEEeccHHhhHHh-eeCCCCCC----CCCCeEEECCHHHHHHHHHHHhCc--cCCcEEEeeCC
Confidence 345666666666 8999999987554211 01110000 011111122233455555544432 26899999985
Q ss_pred CCCc
Q 003230 536 GMPT 539 (837)
Q Consensus 536 ~~p~ 539 (837)
--|.
T Consensus 1079 ~vp~ 1082 (1221)
T PRK14510 1079 TIPS 1082 (1221)
T ss_pred cCCH
Confidence 5443
No 69
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.48 E-value=0.0025 Score=72.33 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=81.2
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCC---CCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccccc
Q 003230 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHS---YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~LmPi~e~~---~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
..+. +.++.++++||+.+.|=-=+-.. ...+.|.+..| ..+| |+.|+.|++.+|++||+.=|=+-+--++
T Consensus 58 ~~i~-~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~----~~kF--P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 58 EKIL-ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD----PKKF--PNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHH-HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB----TTTS--TTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHH-HHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC----hhhh--CCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 3444 57888899999998764322111 11122333222 3466 4579999999999999999999877665
Q ss_pred CCCcccccCCCCCCCCccccCCCCCcc-cCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccc
Q 003230 414 NNVLDGLNMFDGTDGHYFHSGSRGYHW-MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 414 ~~~~~~~~~fdg~~~~yf~~~~~g~~~-~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
.++. .+. ..+.|....+..... ......||+.+|+|+++|.+.+.-.++++|||.|.+|....+
T Consensus 131 ~~S~----l~~-~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 131 PDSD----LYR-EHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp SSSC----HCC-SSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred chhH----HHH-hCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 5531 011 112232221111111 112235999999999999999999999999999999987655
No 70
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.31 E-value=0.00098 Score=73.83 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=85.9
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCcc-ccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHV-TNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v-~~y~a~~~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+-.++. +.++.+++.|| ++|||- .+..-...++||.. .+ |..++ +|- +.++||+++|++|++|++-+. -
T Consensus 21 s~~~v~-~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P 93 (317)
T cd06594 21 GTDKVL-EALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-P 93 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-C
Confidence 556777 68899999887 778885 33111112344421 12 23333 554 467999999999999999554 4
Q ss_pred cccCCCcccccCCCCCCCCccccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 003230 411 HASNNVLDGLNMFDGTDGHYFHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 411 H~s~~~~~~~~~fdg~~~~yf~~~~~g-----~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
++..+..... -++....||.....+ ..|.+.+..+|+.||++++...+.++..+.++|||||-+|.-
T Consensus 94 ~v~~~~~~~y--~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 165 (317)
T cd06594 94 YLADDGPLYY--EEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFG 165 (317)
T ss_pred ceecCCchhH--HHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCC
Confidence 5544321100 022223344433322 122234467999999999999999998877799999999964
No 71
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.30 E-value=0.0036 Score=69.05 Aligned_cols=174 Identities=11% Similarity=0.164 Sum_probs=102.7
Q ss_pred CHHhhHhhhhhHHHHcC--CCEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 335 TYANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LG--vt~I~LmPi~e~~~~~s~GY~v~~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-.++. +.+..+++.| +++|+|=.=+.. +|.-.+ |..+ .+|-. .++||+++|++|++|++-+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~~~lD~~w~~------~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~ 89 (308)
T cd06593 22 DEEEVN-EFADGMRERNLPCDVIHLDCFWMK------EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-Y 89 (308)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEeccccc------CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-C
Confidence 445565 6889999999 566776543321 122123 3444 47764 589999999999999999876 5
Q ss_pred ccCCCcccccCC-CCCCCCccccCCCCCc---ccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccccccc
Q 003230 412 ASNNVLDGLNMF-DGTDGHYFHSGSRGYH---WMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 485 (837)
Q Consensus 412 ~s~~~~~~~~~f-dg~~~~yf~~~~~g~~---~~w--~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~ 485 (837)
++.++. .| .+....||-....+.. ..| ....+|+.||++++++.+.++.+++ +|||||-+|....+...
T Consensus 90 i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 90 IAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGVDCFKTDFGERIPTD 164 (308)
T ss_pred CCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCCcEEecCCCCCCCcc
Confidence 555431 11 1122233433222211 112 2356899999999999999999888 89999999987654221
Q ss_pred ccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCC--eEEEEe
Q 003230 486 HHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE--AVSIGE 532 (837)
Q Consensus 486 ~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~--~~~iaE 532 (837)
- .+..... .....+.-+..+-+.+.+.+++..++ .+++.-
T Consensus 165 ~-----~~~~g~~--~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~R 206 (308)
T cd06593 165 V-----VYYDGSD--GEKMHNYYALLYNKAVYEATKEVKGEGEAVVWAR 206 (308)
T ss_pred c-----cccCCCC--cceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 0 0000000 00012333445566666677666554 555553
No 72
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.30 E-value=0.0017 Score=72.60 Aligned_cols=139 Identities=23% Similarity=0.302 Sum_probs=82.8
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccC-C--------------CCCCCCCccccccCCCCCCCCHHHHHHHHHHHH
Q 003230 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEH-S--------------YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAH 397 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGv--t~I~LmPi~e~-~--------------~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH 397 (837)
+-.++. +.++.+++.|| ++|+|=+ +.. . ....|-|+... |....+|- +.++||+++|
T Consensus 22 ~~~ev~-~v~~~~~~~~iP~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~-f~~~~~FP---dp~~mi~~Lh 95 (340)
T cd06597 22 TQAEVM-RQMDAHEEHGIPVTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFS-FPVEGRWP---NPKGMIDELH 95 (340)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEec-ccCcceeeeeccchhcccccCCcceecccc-cCccccCC---CHHHHHHHHH
Confidence 345665 68888999887 7788753 110 0 00011122222 11123443 5789999999
Q ss_pred HcCCEEEEeeccccccCC-Ccccc--cCC-CCCCCCccccCCCCCc----ccC--CCCCCCCCCHHHHHHHHHHHHHHHH
Q 003230 398 ELGLLVLMDIVHSHASNN-VLDGL--NMF-DGTDGHYFHSGSRGYH----WMW--DSRLFNYGSWEVLRFLLSNARWWLE 467 (837)
Q Consensus 398 ~~GI~VIlDvV~NH~s~~-~~~~~--~~f-dg~~~~yf~~~~~g~~----~~w--~~~~ln~~~~eV~~~l~~~l~~Wl~ 467 (837)
++|++|++=+.+ ++..+ +.... ..| .+....||.....|.. ..| .+..+|+.||++++...+.++++++
T Consensus 96 ~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 96 EQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVD 174 (340)
T ss_pred HCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHH
Confidence 999999985554 22211 10000 001 1222334443333221 123 3467999999999999999999998
Q ss_pred HcCCCeEEEcccc
Q 003230 468 EYKFDGFRFDGVT 480 (837)
Q Consensus 468 e~gvDGfR~D~v~ 480 (837)
++|||||-+|+..
T Consensus 175 ~~Gidg~w~D~~E 187 (340)
T cd06597 175 ELGIDGFKTDGGE 187 (340)
T ss_pred hcCCcEEEecCCC
Confidence 8999999999753
No 73
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.24 E-value=0.0017 Score=71.51 Aligned_cols=128 Identities=22% Similarity=0.405 Sum_probs=83.9
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-.++. +.++.++++|+ +.|+|=--+. ..+| + |..+ .+|- +.++||+++|++|+++++=+-+ +
T Consensus 28 s~~~v~-~~~~~~~~~~iP~d~i~iD~~w~----~~~g----~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~ 93 (303)
T cd06592 28 NQETVL-NYAQEIIDNGFPNGQIEIDDNWE----TCYG----D-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-F 93 (303)
T ss_pred CHHHHH-HHHHHHHHcCCCCCeEEeCCCcc----ccCC----c-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-e
Confidence 445666 58889999995 6777643221 1122 2 2333 3665 3789999999999999998887 4
Q ss_pred ccCCCcccccCCC-CCCCCccccCCCCC----cccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 412 ASNNVLDGLNMFD-GTDGHYFHSGSRGY----HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 412 ~s~~~~~~~~~fd-g~~~~yf~~~~~g~----~~~w~--~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
++.++. .|+ +....||-....+. ...|. ...+|+.||++++++.+.++..+.++|||||-+|...
T Consensus 94 i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 94 INTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred eCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 444321 111 22233443333220 11232 3569999999999999999999977999999999754
No 74
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.78 E-value=0.031 Score=65.72 Aligned_cols=128 Identities=20% Similarity=0.291 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH---------HcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHH
Q 003230 445 RLFNYGSWEVLRFLLSNARWWLE---------EYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLML 515 (837)
Q Consensus 445 ~~ln~~~~eV~~~l~~~l~~Wl~---------e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~ 515 (837)
.++|-+||.|+..-+.++-|.+. +..|||||+|||..+ |.+ .|+.
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV-----------------------dAD---lLqi 197 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV-----------------------DAD---LLQI 197 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS------------------------TH---HHHH
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc-----------------------CHH---HHHH
Confidence 57899999999999999999997 678999999999765 222 2333
Q ss_pred HHHHhhcc---C------CCeEEEEecCCCC-CcceeccccCCcccchhhhhhHHHHHHHHHhh-cchhhhhhhhH-Hhh
Q 003230 516 VNDMIHGL---Y------PEAVSIGEDVSGM-PTFCIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIV-HTM 583 (837)
Q Consensus 516 ~~~~v~~~---~------P~~~~iaE~~~~~-p~~~~~~~~gglgfD~~~~~~~~d~~~~~lk~-~~~~~~~~~l~-~~l 583 (837)
..+.++.. . -+-+.|-|.|+.. |.....-....|-+|..++..+.. .|.. ......+..+. ..+
T Consensus 198 a~dyfkaaYgv~~~~a~An~HlSilE~ws~nd~~y~~~~g~~qL~mD~~~~~~l~~----sL~~~~~~R~~l~~li~~sl 273 (809)
T PF02324_consen 198 AGDYFKAAYGVDKNDANANKHLSILEAWSSNDPDYVKDTGNPQLTMDNGLRLALLY----SLTRPSNNRSGLEPLITNSL 273 (809)
T ss_dssp HHHHHHHHH-TTTBHHHHCTC--EESSSTTTHHHHHHHTTSSSBEEEHHHHHHHHH----HTSS-TTC---CTHHHHSSS
T ss_pred HHHHHHHHhCCCcChhhHhhhheeeeccccCChHHHhcCCCceeeecHHHHHHHHH----HhcCCccccccHHHHhhhhh
Confidence 33333322 1 2578999999752 222211112235677776665532 2222 11222222222 233
Q ss_pred ccCccc------ccceecccCcccc
Q 003230 584 TNRRWL------EKCVAYAESHDQA 602 (837)
Q Consensus 584 ~~~~~~------~~~v~ylenHD~~ 602 (837)
.+|... .....|+.+||..
T Consensus 274 vnR~~d~~en~a~pNYsFvrAHDse 298 (809)
T PF02324_consen 274 VNRSNDSTENEAQPNYSFVRAHDSE 298 (809)
T ss_dssp SECSEE--SSESS-EEEES-BSSTT
T ss_pred cccccCCcCCcccCceeeeecccHH
Confidence 333211 1235689999986
No 75
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.73 E-value=0.036 Score=65.26 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccc--cccCCCcccc----------cC-CCCCCCCccccCCCCCcccCCCCCCCCCCHH
Q 003230 387 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGL----------NM-FDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 453 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~N--H~s~~~~~~~----------~~-fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~e 453 (837)
++++++-+.|+++||++|-|+.+- +-|.+..... .. .+|.+|.||... | -.|+.+.+|+..-.
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~--G--Q~WG~P~y~w~~l~ 287 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQ--G--QNWGLPPYDWNVLK 287 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCccccc--C--CCCCCCCcCHHHHH
Confidence 445566677888999999999873 3333321100 01 333346677543 3 24788888764211
Q ss_pred --HHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEE
Q 003230 454 --VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 454 --V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~ia 531 (837)
--+..++-++.=++ .+|++|+|.+..+... .-++.+- -....|.....+..+++..+....... +.+||
T Consensus 288 ~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~-w~IP~g~---~ta~~G~wv~~Pg~~l~~~l~~e~~~~---~~vIa 358 (513)
T TIGR00217 288 ARGYEWWIKRLGANMQ--YADILRIDHFRGFVSL-WWVPAGE---STAFNGAWVHYPGDDFFNILANESKDN---LKIIG 358 (513)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeEeCCHHHHHHHHHHHcCCC---CcEEe
Confidence 11234555555555 7999999987543211 0111111 001112222233445565555444321 78999
Q ss_pred ecCCCCC
Q 003230 532 EDVSGMP 538 (837)
Q Consensus 532 E~~~~~p 538 (837)
|+.+--|
T Consensus 359 EDLG~v~ 365 (513)
T TIGR00217 359 EDLGTVP 365 (513)
T ss_pred eeCCCCC
Confidence 9985433
No 76
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.68 E-value=0.0056 Score=67.90 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=80.7
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
+-.++. +.+..+++.+| +.|+|-.=+- ..+..+-++. .+|- +.++||+.+|++|++|++-+.+ ++
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~-------~~FP---dp~~~i~~l~~~g~k~~~~~~P-~i 88 (317)
T cd06600 22 PQDKVV-EVVDIMQKEGFPYDVVFLDIHYM-DSYRLFTWDP-------YRFP---EPKKLIDELHKRNVKLVTIVDP-GI 88 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCcceEEEChhhh-CCCCceeech-------hcCC---CHHHHHHHHHHCCCEEEEEeec-cc
Confidence 445565 58888888887 6777642111 1111222222 2554 4579999999999999996654 34
Q ss_pred cCCCcccccCCCCCCCCccccCCCCC---cccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 413 SNNVLDGLNMFDGTDGHYFHSGSRGY---HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 413 s~~~~~~~~~fdg~~~~yf~~~~~g~---~~~w~--~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
+.+.. ......+....||.....+. ...|. ...+|+.||++++...+.++..+.+.|||||-+|...
T Consensus 89 ~~~~~-~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 89 RVDQN-YSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred cCCCC-ChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 33210 00001222334554333221 12232 3568999999999999999999877999999999753
No 77
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.67 E-value=0.035 Score=67.52 Aligned_cols=139 Identities=13% Similarity=0.152 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCC--EEEEeeccc--cccCCCcccc-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHH--H
Q 003230 387 DDLKSLIDKAHELGL--LVLMDIVHS--HASNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--L 455 (837)
Q Consensus 387 edfk~LV~~aH~~GI--~VIlDvV~N--H~s~~~~~~~-----~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV--~ 455 (837)
++++++.+.|+++|| ++|-|+-+- +-|.+..... ..--|.+|.+|... |+ .|+.+.+|+..-.- -
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~--GQ--~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPL--GQ--NWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcc--cc--cCCCcCcCHHHHHhcCc
Confidence 678888899999999 679999863 3333321111 11236677777543 32 47777776642111 1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCC
Q 003230 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (837)
Q Consensus 456 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~ 535 (837)
+..++-++.-++ ++|++|+|.+..+... .-++.+- ....|.....+.-+++..+ ++.+..+++.+|||+.+
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl~rl-W~IP~g~----~a~~G~yv~~P~~~ll~~l--ales~~~~~~vIgEDLG 501 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSLLRL-WWIPYGE----TADQGAYVHYPVDDLLAIL--ALESQRHRCMVIGEDLG 501 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhhhee-eecCCCC----CCCCCeeEeCCHHHHHHHH--HHHHhcCCCCEEEeeCC
Confidence 234555555555 7999999987544211 0111100 1111211212222333322 23445568999999985
Q ss_pred CCC
Q 003230 536 GMP 538 (837)
Q Consensus 536 ~~p 538 (837)
--|
T Consensus 502 ~Vp 504 (695)
T PRK11052 502 TVP 504 (695)
T ss_pred CCC
Confidence 544
No 78
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.56 E-value=0.041 Score=59.01 Aligned_cols=137 Identities=19% Similarity=0.185 Sum_probs=81.4
Q ss_pred hHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCC--CHHHHHHHHHHHHHcCCEEEEeeccccccCCC
Q 003230 339 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 416 (837)
Q Consensus 339 ~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~G--t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~ 416 (837)
.+++.++.|+++|+|+|-|.--++......-+| .+. ..+.|+++|+.|+++||+||+|+--.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~----------~~~~~~~~~ld~~v~~a~~~gi~vild~h~~------ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY----------NYDETYLARLDRIVDAAQAYGIYVILDLHNA------ 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT----------SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES------
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc----------cccHHHHHHHHHHHHHHHhCCCeEEEEeccC------
Confidence 455789999999999998765432111011111 122 26899999999999999999997543
Q ss_pred cccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHc----CCCeEEEcccccccccccCcccc
Q 003230 417 LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY----KFDGFRFDGVTSMMYTHHGLQVA 492 (837)
Q Consensus 417 ~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~----gvDGfR~D~v~~m~~~~~g~~~~ 492 (837)
+.|.. ........+...+++.+.++++...| .|-|| +.+
T Consensus 86 -----------~~w~~-----------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~--el~------------- 128 (281)
T PF00150_consen 86 -----------PGWAN-----------GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGW--ELW------------- 128 (281)
T ss_dssp -----------TTCSS-----------STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEE--ESS-------------
T ss_pred -----------ccccc-----------cccccccchhhHHHHHhhhhhhccccCCCCcEEEE--Eec-------------
Confidence 00100 01112223345666777777777777 22232 221
Q ss_pred ccCCcccccCccc-------C-hhHHHHHHHHHHHhhccCCCeEEEEec
Q 003230 493 FTGNYSEYFGFAT-------D-VDAVVYLMLVNDMIHGLYPEAVSIGED 533 (837)
Q Consensus 493 f~~~~~~~~g~~~-------d-~~~~~fl~~~~~~v~~~~P~~~~iaE~ 533 (837)
+|...... . ..-..+.+.+.+.|++..|+.+++.+.
T Consensus 129 -----NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 129 -----NEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp -----SSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred -----CCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 22211111 1 222468899999999999988877765
No 79
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.48 E-value=0.029 Score=61.81 Aligned_cols=175 Identities=23% Similarity=0.226 Sum_probs=97.8
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCC-CCCCCCCccccccC--CCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCC
Q 003230 340 RDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFA--PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 416 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~LmPi~e~~-~~~s~GY~v~~y~a--~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~ 416 (837)
.++.|+.|++-|+|+|-+ +-. .++.-.|....--+ +...-....|+++|+++||++||.+|.=+|.= ++.
T Consensus 15 ~~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F---kD~ 87 (316)
T PF13200_consen 15 LDKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF---KDP 87 (316)
T ss_pred HHHHHHHHHhcCCceEEE----EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe---cCh
Confidence 347899999999999954 222 11222232222111 11111125799999999999999999999841 111
Q ss_pred cccccCCCCCCCCccccCCCCCccc--CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCcccccc
Q 003230 417 LDGLNMFDGTDGHYFHSGSRGYHWM--WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 494 (837)
Q Consensus 417 ~~~~~~fdg~~~~yf~~~~~g~~~~--w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 494 (837)
. +.. ..+.+-.....|..|. -+..-+|-.+++|++|+++.++-..+ .|||.+-||-+..=- .+.....
T Consensus 88 ~--la~---~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRFP~---~~~~~~l- 157 (316)
T PF13200_consen 88 V--LAE---AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK-LGFDEIQFDYIRFPD---EGRLSGL- 157 (316)
T ss_pred H--Hhh---hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHH-cCCCEEEeeeeecCC---CCccccc-
Confidence 0 000 0111111112222111 01234788899999999999999888 899999999874321 0000000
Q ss_pred CCcccccCcccChhHH-HHHHHHHHHhhccCCCeEEEEecC
Q 003230 495 GNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGEDV 534 (837)
Q Consensus 495 ~~~~~~~g~~~d~~~~-~fl~~~~~~v~~~~P~~~~iaE~~ 534 (837)
.|........-.+++ +|++.+++.++.. ++.+=+-..
T Consensus 158 -~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~--~v~vSaDVf 195 (316)
T PF13200_consen 158 -DYSENDTEESRVDAITDFLAYAREELHPY--GVPVSADVF 195 (316)
T ss_pred -ccCCCCCcchHHHHHHHHHHHHHHHHhHc--CCCEEEEec
Confidence 111111111123454 8999999999766 344444433
No 80
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.43 E-value=0.015 Score=64.49 Aligned_cols=130 Identities=14% Similarity=0.244 Sum_probs=78.2
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-.++. +.++.+++.|+ ++|+|=- .+....|+ .+ |..+ .+|-. .++||+.+|++|++||+-+. -+
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD~----~~~~~~~~--~~-f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~-P~ 89 (319)
T cd06591 22 TQEELL-DVAKEYRKRGIPLDVIVQDW----FYWPKQGW--GE-WKFDPERFPD---PKAMVRELHEMNAELMISIW-PT 89 (319)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEec----hhhcCCCc--ee-EEEChhhCCC---HHHHHHHHHHCCCEEEEEec-CC
Confidence 344555 57888888755 6776631 11111121 12 3333 36654 47899999999999999554 34
Q ss_pred ccCCCcccccCC-CCCCCCccccCCCC--CcccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 412 ASNNVLDGLNMF-DGTDGHYFHSGSRG--YHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 412 ~s~~~~~~~~~f-dg~~~~yf~~~~~g--~~~~w~--~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
++.+.. .| ++....||.....+ +...|. ...+|+.||++++...+.++..+.++|||||-+|...
T Consensus 90 v~~~~~----~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 90 FGPETE----NYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred cCCCCh----hHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 544321 11 11222344333222 112343 3679999999999988877765656999999999864
No 81
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.37 E-value=0.019 Score=64.30 Aligned_cols=133 Identities=13% Similarity=0.140 Sum_probs=79.5
Q ss_pred HhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 003230 337 ANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
.++. +.+..+++.|+ +.|+|-.=+. ..+.+|-++. .+|-.+.. ++||+++|++|++|++-+.+ |+..
T Consensus 24 ~~v~-~~~~~~r~~~iP~d~i~lD~~~~-~~~~~f~~d~-------~~FPdp~~-~~mi~~L~~~G~k~~~~i~P-~v~~ 92 (339)
T cd06602 24 DEVK-EVVENMRAAGIPLDVQWNDIDYM-DRRRDFTLDP-------VRFPGLKM-PEFVDELHANGQHYVPILDP-AISA 92 (339)
T ss_pred HHHH-HHHHHHHHhCCCcceEEECcccc-cCccceeccc-------ccCCCccH-HHHHHHHHHCCCEEEEEEeC-cccc
Confidence 4555 57888888887 6777642221 1111222222 24443321 89999999999999997654 3333
Q ss_pred CC-cccccCC-CCCCCCccccCCCCCc---ccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 415 NV-LDGLNMF-DGTDGHYFHSGSRGYH---WMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 415 ~~-~~~~~~f-dg~~~~yf~~~~~g~~---~~w--~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
+. ......| ++....||.....|.. ..| ....+|+.||++++...+.++.+++++|||||-+|...
T Consensus 93 ~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 93 NEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred CcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 21 0001111 1222334443332211 122 23558999999999999999999988999999999754
No 82
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=96.23 E-value=0.046 Score=65.94 Aligned_cols=132 Identities=13% Similarity=0.021 Sum_probs=80.8
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCC--CCccccccCC-CCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF--GYHVTNFFAP-SSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~--GY~v~~y~a~-~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-+.+. ..|+.|+++|+|+|+|-.+......+.+ -|-|..+.-. ++-| +-+.-.+ +|++|++|..-+-+--
T Consensus 332 q~~~L~-~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f---~~~aw~l--~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 332 QDRNID-VLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLF---NRVAWQL--RTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCc---CHHHHHH--HHhhCCEEEEecccee
Confidence 345665 6999999999999999887654432221 2333332222 1112 1122222 9999999987766543
Q ss_pred ccCCCc-ccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 003230 412 ASNNVL-DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 412 ~s~~~~-~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
++-+.. .....++ ...++...+..|..+ ||-.+|+||+.|.++..-.+..+.|||+-||-=
T Consensus 406 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd 467 (671)
T PRK14582 406 FDLDPTLPRVKRLD------TGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDD 467 (671)
T ss_pred eccCCCcchhhhcc------ccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEeccc
Confidence 332110 0000010 001111234556545 999999999999999999999889999999853
No 83
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=96.10 E-value=0.044 Score=63.83 Aligned_cols=87 Identities=21% Similarity=0.366 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccccc--cCCCcccc-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHH
Q 003230 387 DDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLL 459 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~NH~--s~~~~~~~-----~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~ 459 (837)
+.+.++=.-|+++||.+|.|+.+.=. |.+..... ..--|.+|.+|... | -.|+.+..|+..- ..
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~~--G--Q~Wg~p~yn~~~l-----~~ 280 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNAQ--G--QDWGLPPYNPEAL-----KK 280 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCccccc--c--cccCCCCCCHHHH-----HH
Confidence 55666667778899999999987533 22221100 11125555666432 2 3477776555422 22
Q ss_pred HHHHHHHHH-----cCCCeEEEcccccc
Q 003230 460 SNARWWLEE-----YKFDGFRFDGVTSM 482 (837)
Q Consensus 460 ~~l~~Wl~e-----~gvDGfR~D~v~~m 482 (837)
+...+|++- -.+|+.|+|.+..+
T Consensus 281 ~~y~wwierlr~~~~~~~~lRIDHf~Gl 308 (520)
T COG1640 281 DGYDWWIERLRANLKLYGILRIDHFRGL 308 (520)
T ss_pred cccHHHHHHHHHHHHhcCeeeeeeecch
Confidence 233444431 26999999988654
No 84
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.07 E-value=0.06 Score=63.65 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=69.4
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC------------CCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS------------SRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~------------~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
+.|+.|++.=||.||+= .|-|.-...+..+ .|-=..+-.|.+|++||+.||++|.=.-.
T Consensus 122 ~~i~~L~~yHIN~~QFY---------DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmi 192 (559)
T PF13199_consen 122 AEIDQLNRYHINGLQFY---------DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMI 192 (559)
T ss_dssp HHHHHHHHTT--EEEET---------S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHhhCcCeEEEE---------eeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhh
Confidence 68999999999999852 2333333323222 22223789999999999999999864333
Q ss_pred ccccCCCcccccCCCCCCCCcc--ccCCCC------CcccCCC--CCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 003230 410 SHASNNVLDGLNMFDGTDGHYF--HSGSRG------YHWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 410 NH~s~~~~~~~~~fdg~~~~yf--~~~~~g------~~~~w~~--~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
.-+..+. .-+|..+.|+ ...... ....|.+ -.+|.+|++-|++|+..+...++.+|||||.+|.+
T Consensus 193 yaa~~~~-----~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~ 267 (559)
T PF13199_consen 193 YAANNNY-----EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQL 267 (559)
T ss_dssp SEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S
T ss_pred hccccCc-----ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeecc
Confidence 3222221 0123322221 111110 0112433 56899999999999999999999999999999998
Q ss_pred cc
Q 003230 480 TS 481 (837)
Q Consensus 480 ~~ 481 (837)
..
T Consensus 268 G~ 269 (559)
T PF13199_consen 268 GN 269 (559)
T ss_dssp --
T ss_pred CC
Confidence 63
No 85
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.90 E-value=0.012 Score=65.11 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=77.8
Q ss_pred hhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 003230 338 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 338 ~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
++. +.++.+++.|| ++|+|-+=+.... |-.-.+ |..+ .+|- +.++||+++|++|++|++-+.+- ++.
T Consensus 30 ~v~-~~~~~~r~~~iP~d~i~ld~~~~~~~----~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~ 99 (317)
T cd06599 30 ALL-EFIDKCREHDIPCDSFHLSSGYTSIE----GGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQ 99 (317)
T ss_pred HHH-HHHHHHHHcCCCeeEEEEeccccccC----CCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccC
Confidence 454 57888888887 7787643211100 100011 3333 4665 46799999999999999965543 433
Q ss_pred CCcccccCC-CCCCCCccccCCC------CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 003230 415 NVLDGLNMF-DGTDGHYFHSGSR------GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 415 ~~~~~~~~f-dg~~~~yf~~~~~------g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
+++ .| .+....||-.... +..|......+|+.||++++...+.++.-+.+.|||||-+|..
T Consensus 100 ~~~----~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 167 (317)
T cd06599 100 DHP----RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNN 167 (317)
T ss_pred CCH----HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 321 11 1122234432221 1122223356999999999999999977766699999999965
No 86
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.79 E-value=0.033 Score=62.34 Aligned_cols=129 Identities=20% Similarity=0.295 Sum_probs=80.2
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-.++. +.++.+++.|| ++|||-.-+.. +|. + |.-++ +|-. .++||+.+|++|++|++-+.+ |
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~~------~~~--~-f~~d~~~fPd---p~~m~~~l~~~g~~~~~~~~P-~ 87 (339)
T cd06604 22 PEEEVR-EIADEFRERDIPCDAIYLDIDYMD------GYR--V-FTWDKERFPD---PKELIKELHEQGFKVVTIIDP-G 87 (339)
T ss_pred CHHHHH-HHHHHHHHhCCCcceEEECchhhC------CCC--c-eeeccccCCC---HHHHHHHHHHCCCEEEEEEeC-c
Confidence 345555 68889999887 77887543321 121 1 33333 6654 579999999999999987654 3
Q ss_pred ccCCCcccccCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 412 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 412 ~s~~~~~~~~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
+..+. ....| ++....||-....+. ...| ....+|+.||+++++..+.++..++ .|||||-+|...
T Consensus 88 v~~~~--~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 88 VKVDP--GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred eeCCC--CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCceEeecCCC
Confidence 32211 00011 122223443332221 1122 2345899999999999999998875 999999999754
No 87
>PRK10426 alpha-glucosidase; Provisional
Probab=95.69 E-value=0.12 Score=62.59 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=84.0
Q ss_pred HhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccc-cccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 337 ANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVT-NFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~-~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
..+. +.++.+++.|| ++|||. -+....+.++|...- || ..+ .+|- +.++||+++|++|++|++-+-+. +
T Consensus 221 ~~v~-~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~-~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 221 EVVQ-KKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNW-KWDSERYP---QLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHH-HHHHHHHHcCCCeeEEEEe-cccccccccccccccccc-eEChhhCC---CHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 4555 68889999985 889985 222111223443221 22 222 3443 46789999999999999987653 2
Q ss_pred cCCCcccccCC-CCCCCCccccCCCCC-----cccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccc
Q 003230 413 SNNVLDGLNMF-DGTDGHYFHSGSRGY-----HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 413 s~~~~~~~~~f-dg~~~~yf~~~~~g~-----~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
..+.. .| ++....||..+.+|. .|.+....+|+.||++++...+.++..+.+.|||||-.|.-..+
T Consensus 294 ~~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 294 ASDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred CCCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCC
Confidence 22221 11 122234444333321 12233467999999999999999877776699999999976543
No 88
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.55 E-value=0.023 Score=65.84 Aligned_cols=131 Identities=21% Similarity=0.369 Sum_probs=76.9
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccccc
Q 003230 336 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
-..+. +.++.+++.|+ ++|+|-.-+.. .+..|-++.. +|- ++++|++.+|++|++|++-+.+ ++.
T Consensus 42 ~~~v~-~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~-------~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~ 108 (441)
T PF01055_consen 42 QDEVR-EVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPE-------RFP---DPKQMIDELHDQGIKVVLWVHP-FVS 108 (441)
T ss_dssp HHHHH-HHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TT-------TTT---THHHHHHHHHHTT-EEEEEEES-EEE
T ss_pred HHHHH-HHHHHHHHcCCCccceeccccccc-cccccccccc-------ccc---chHHHHHhHhhCCcEEEEEeec-ccC
Confidence 34555 68888998887 45554332221 1122222222 443 7889999999999999999887 343
Q ss_pred CCCcccccCCC-CCCCCccccCCCC---CcccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 414 NNVLDGLNMFD-GTDGHYFHSGSRG---YHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 414 ~~~~~~~~~fd-g~~~~yf~~~~~g---~~~~w~--~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
.... ....|+ +....|+.....+ ....|. ...+|+.||++++.+.+.++..++.+|||||-+|...
T Consensus 109 ~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 109 NDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp TTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTT
T ss_pred CCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCC
Confidence 3321 000010 1112233333322 112244 4679999999999999999999997899999999854
No 89
>smart00632 Aamy_C Aamy_C domain.
Probab=95.38 E-value=0.077 Score=46.59 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=42.5
Q ss_pred CCCcEEEEEc-CcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcceeccccccCCCCeEEEEEE
Q 003230 739 EGDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYA 817 (837)
Q Consensus 739 ~~~~Vlaf~R-~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~L 817 (837)
.++++|+|.| +..+|++|.+.......+...+ +.|+|++++.. ...|. .+.. ...+.+.++|
T Consensus 6 ~~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~l-p~G~Y~d~l~g---~~~g~-------~v~V------~~~G~~~~~l 68 (81)
T smart00632 6 NGDNQIAFERGSKGFVAINRSDSDLTITLQTSL-PAGTYCDVISG---LCTGK-------SVTV------GSNGIATFTL 68 (81)
T ss_pred CCCeEEEEECCCeEEEEEECCCCceEEEEeecC-CCcceEEEecC---cccCC-------EEEE------CCCCEEEEEE
Confidence 3455999999 5788889988532222233244 45999999863 00111 1111 0123588999
Q ss_pred cCce-EEEEE
Q 003230 818 PSRT-AVVYA 826 (837)
Q Consensus 818 p~~s-~~Vl~ 826 (837)
||++ ++|+.
T Consensus 69 ~~~~~v~i~~ 78 (81)
T smart00632 69 PAGGAVAIHV 78 (81)
T ss_pred CCCCeEEEEE
Confidence 9999 55554
No 90
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=95.05 E-value=0.25 Score=65.08 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHcC--CEEEEeeccc--cccCCCcccc-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHH--H
Q 003230 387 DDLKSLIDKAHELG--LLVLMDIVHS--HASNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--L 455 (837)
Q Consensus 387 edfk~LV~~aH~~G--I~VIlDvV~N--H~s~~~~~~~-----~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV--~ 455 (837)
++++++-+.|+++| |++|-|+-+. +-|.+.+... ..--|.+|.+|... |+ .|+.+.+|+..-+- -
T Consensus 386 ~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~~~aGAPPD~Fs~~--GQ--~WG~P~y~p~~L~~~gY 461 (1693)
T PRK14507 386 LQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANGASIGAPPDELNPK--GQ--DWGLPPFDPLELERDGY 461 (1693)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcCCccCCCCCcCccc--cc--cCCCcCcCHHHHHhcCh
Confidence 67788888999999 7889999863 3333321111 12236677777543 33 47777777643211 1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEecCC
Q 003230 456 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 535 (837)
Q Consensus 456 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~~ 535 (837)
+..++-++.-++ ++|++|+|.+..+... .-++.+- ....|.....+..+++..+. +.+..+++.+|||+.+
T Consensus 462 ~ww~~rlr~~m~--~~g~lRIDH~lGl~Rl-W~IP~g~----ta~~G~yv~yP~~~ll~~la--LEs~r~~~~VIgEDLG 532 (1693)
T PRK14507 462 APFRALLRANMR--HAGALRIDHVMQLMRL-FWIPLGR----SAREGAYVAYPFEPMLAVLA--LESHRNRCLVIGEDLG 532 (1693)
T ss_pred HHHHHHHHHHHH--HCCEEEeccHHhhhHh-cccCCCC----CCCCCeEEECCHHHHHHHHH--HHHhcCCCeEEEecCC
Confidence 235555666666 6899999987544211 0111110 11112122222233443332 2344567899999985
Q ss_pred CCC
Q 003230 536 GMP 538 (837)
Q Consensus 536 ~~p 538 (837)
--|
T Consensus 533 tVp 535 (1693)
T PRK14507 533 TVP 535 (1693)
T ss_pred CCC
Confidence 443
No 91
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=94.95 E-value=0.11 Score=57.21 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCcccC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccccccccc-CccccccCCcccccCcccChhHHHHHH
Q 003230 437 GYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHH-GLQVAFTGNYSEYFGFATDVDAVVYLM 514 (837)
Q Consensus 437 g~~~~w-~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~-g~~~~f~~~~~~~~g~~~d~~~~~fl~ 514 (837)
+....| ++..+|+.+++.+++|++-+...++ .|+|||-+|.+....+... +. .+ .....+-+.|++
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy~~~~~~~~--~~---------~~~~~~m~~~i~ 194 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAFEYWAENGD--NR---------PGAAAEMIAFVC 194 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhhhhhcccCC--cc---------hhhHHHHHHHHH
Confidence 345668 7789999999999999988777666 7999999999865432100 00 00 001123468899
Q ss_pred HHHHHhhccCCCeEEEE
Q 003230 515 LVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 515 ~~~~~v~~~~P~~~~ia 531 (837)
.+.+.+|+.+|++++|.
T Consensus 195 ~Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 195 EIAAYARAQNPQFVIIP 211 (315)
T ss_pred HHHHHHHHHCCCEEEEe
Confidence 99999999999999985
No 92
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.53 E-value=0.16 Score=55.70 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=72.4
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCC----CCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEee
Q 003230 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHS----YYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDI 407 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~----~~~s~GY~v~~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDv 407 (837)
+-.++. +.+..+++.|| ++|+|=-=+... .+. -+|. -|..+ .+|- +.++||+++|++|++||+-+
T Consensus 23 s~~ev~-~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~-~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYL-ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYG-SGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEeccccccccccccc-CCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEe
Confidence 445665 58888888777 677762211110 000 0111 13333 3564 45899999999999999988
Q ss_pred ccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 003230 408 VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 408 V~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
.+......... .|+. +..........-+...+|+.||+.++...+.+..-+.++|||||-.|.
T Consensus 95 ~P~~~~~~~~~---~y~~-----~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~ 157 (292)
T cd06595 95 HPADGIRAHED---QYPE-----MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDW 157 (292)
T ss_pred CCCcccCCCcH---HHHH-----HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 77532111100 0100 000000000000113679999999998777776666669999999995
No 93
>PRK10658 putative alpha-glucosidase; Provisional
Probab=94.30 E-value=0.057 Score=65.60 Aligned_cols=126 Identities=11% Similarity=0.238 Sum_probs=80.4
Q ss_pred hhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccccccC
Q 003230 338 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 414 (837)
Q Consensus 338 ~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~ 414 (837)
.+. +.++.+++.|+ ++|+|-..+-. +|+-.+ |..+ .+|-. .+.||+++|++|++|++-+.+ ++..
T Consensus 284 ~v~-~~~~~~r~~~iP~d~i~lD~~w~~------~~~~~~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~i~P-~i~~ 351 (665)
T PRK10658 284 TVN-SFIDGMAERDLPLHVFHFDCFWMK------EFQWCD-FEWDPRTFPD---PEGMLKRLKAKGLKICVWINP-YIAQ 351 (665)
T ss_pred HHH-HHHHHHHHcCCCceEEEEchhhhc------CCceee-eEEChhhCCC---HHHHHHHHHHCCCEEEEeccC-CcCC
Confidence 344 46777888877 55665433211 122123 2222 34543 468999999999999997665 3433
Q ss_pred CCcccccCC-CCCCCCccccCCCCCccc---C--CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 415 NVLDGLNMF-DGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 415 ~~~~~~~~f-dg~~~~yf~~~~~g~~~~---w--~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
++. .| ++....||-...+|..+. | +...+|+.||++|+...+.++.+++ +|||||-.|...
T Consensus 352 ~s~----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE 418 (665)
T PRK10658 352 KSP----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGE 418 (665)
T ss_pred Cch----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCc
Confidence 321 11 133344665555443332 3 3467999999999999999999887 899999999654
No 94
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=94.28 E-value=0.07 Score=53.24 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCc-----EEEEeec----CCCcEEEEEc--------------CcEEEEEECCC
Q 003230 708 RGMQEFDRAMQHLEEKYGFMTSEH-----QYVSRKD----EGDRVIVFER--------------GNLVFVFNFHW 759 (837)
Q Consensus 708 ~~l~~f~r~Li~LR~~~~~L~~g~-----~~i~~~~----~~~~Vlaf~R--------------~~llvv~Nf~~ 759 (837)
....+++++|++||+++|+++=+. .-+.+.+ ...+||++.- +.++||||-+|
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 466899999999999999875321 1122222 2366888775 24999999996
No 95
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.06 E-value=0.09 Score=58.34 Aligned_cols=129 Identities=11% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEEcCcccCCC--CCCCCCccccccCC-CCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 336 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSY--YASFGYHVTNFFAP-SSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~--~~s~GY~v~~y~a~-~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
-.++. +.++.+++.|+ ++|+|=.=+-... ...+| + |.. ..+|-.| ++||+.+|++|++|++-+.+
T Consensus 23 ~~~v~-~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~----~-f~wd~~~FPdp---~~mi~~L~~~G~k~~~~v~P- 92 (317)
T cd06598 23 WQEVD-DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG----N-LDWDRKAFPDP---AGMIADLAKKGVKTIVITEP- 92 (317)
T ss_pred HHHHH-HHHHHHHHhCCCceEEEEechhhcCcccCCcee----e-eEeccccCCCH---HHHHHHHHHcCCcEEEEEcC-
Confidence 34555 58888888886 6776643221000 00111 2 222 2466544 78999999999999998764
Q ss_pred cccCCCcccccCC-CCCCCCc-cccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 003230 411 HASNNVLDGLNMF-DGTDGHY-FHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 411 H~s~~~~~~~~~f-dg~~~~y-f~~~~~g-----~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
+++.+++ .| ++....| +.....+ ..|......+|+.||++++...+.++..++ .|||||-+|.-
T Consensus 93 ~v~~~~~----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~ 163 (317)
T cd06598 93 FVLKNSK----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID-QGVTGWWGDLG 163 (317)
T ss_pred cccCCch----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh-CCccEEEecCC
Confidence 3333221 11 1112223 2222111 122224567899999999999999988755 99999999964
No 96
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=93.36 E-value=0.5 Score=52.80 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=70.8
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 336 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
-.++. +.++.+++.+| ++|||=.=+. . +|. .|..+ .+|-.+ ++||+++|++|++|++-+.+- +
T Consensus 23 ~~ev~-~v~~~~r~~~IP~D~i~lDidy~----~--~~~---~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i 88 (332)
T cd06601 23 RSDLE-EVVEGYRDNNIPLDGLHVDVDFQ----D--NYR---TFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-I 88 (332)
T ss_pred HHHHH-HHHHHHHHcCCCCceEEEcCchh----c--CCC---ceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-e
Confidence 34455 57777777776 7777654221 1 221 23444 467555 689999999999999987642 1
Q ss_pred cCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 003230 413 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 413 s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
.. |. .+.+.+.-.||.||++|++-.+..+.+.+ .|||||-.|.-
T Consensus 89 ~~----------g~------------~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~~~W~Dmn 132 (332)
T cd06601 89 SY----------GG------------GLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLEFVWQDMT 132 (332)
T ss_pred ec----------Cc------------cCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCceeecCCC
Confidence 10 10 11122345689999999998888888877 79999999974
No 97
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=92.74 E-value=0.42 Score=51.13 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 464 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~ 464 (837)
+.+++++.|..+|++|+||++=+--+|.+.. | ....+++-++.+.+.+.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-------~-----------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-------F-----------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-------c-----------------------cccCCHHHHHHHHHHHHH
Confidence 4789999999999999999998765544321 0 011235556777778888
Q ss_pred HHHHcCCCeEEEcc
Q 003230 465 WLEEYKFDGFRFDG 478 (837)
Q Consensus 465 Wl~e~gvDGfR~D~ 478 (837)
+++.||+||+=+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 88889999999994
No 98
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=92.72 E-value=0.58 Score=52.84 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 003230 390 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 469 (837)
Q Consensus 390 k~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~ 469 (837)
++|+..||++|++|++.. + + + .-...+++.|+.+++++.-+++++
T Consensus 67 ~~~~~~A~~~~v~v~~~~-------~-------~----~-----------------~~~l~~~~~R~~fi~siv~~~~~~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG-------D-------V----P-----------------LEQISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHcCCEEEEEC-------c-------c----C-----------------HHHcCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999641 0 0 0 002457889999999999999999
Q ss_pred CCCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHHhhccCCC
Q 003230 470 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPE 526 (837)
Q Consensus 470 gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~-~~fl~~~~~~v~~~~P~ 526 (837)
|+||+-+|-=.-. . ....+.+. ..|++++++.+++..++
T Consensus 112 gfDGIdIDwE~p~-------------~-----~~~~d~~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 112 FMDGINIDIEQPI-------------T-----KGSPEYYALTELVKETTKAFKKENPG 151 (358)
T ss_pred CCCeEEEcccCCC-------------C-----CCcchHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999952100 0 00122233 47899999999886554
No 99
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=92.45 E-value=0.96 Score=50.38 Aligned_cols=146 Identities=17% Similarity=0.164 Sum_probs=77.7
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCccccc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 421 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~ 421 (837)
+.+..||+.|+|+|-|=- +-.|+. .-+-+.+...+|.++|+++||+|+||+=++.+-.+.
T Consensus 28 d~~~ilk~~G~N~vRlRv-wv~P~~--------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP----- 87 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRV-WVNPYD--------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP----- 87 (332)
T ss_dssp -HHHHHHHTT--EEEEEE--SS-TT--------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT-----
T ss_pred CHHHHHHhcCCCeEEEEe-ccCCcc--------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC-----
Confidence 689999999999998643 333331 445678999999999999999999999776553321
Q ss_pred CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCccccc
Q 003230 422 MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 501 (837)
Q Consensus 422 ~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~ 501 (837)
|. + .-.-.|....++--...|.+|-.++|....+ .|+ -.|.|. +..+ +..++- |. .
T Consensus 88 ---g~--Q-------~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~-~G~---~pd~VQ-VGNE---in~Gml--wp--~ 143 (332)
T PF07745_consen 88 ---GK--Q-------NKPAAWANLSFDQLAKAVYDYTKDVLQALKA-AGV---TPDMVQ-VGNE---INNGML--WP--D 143 (332)
T ss_dssp ---TB----------B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH-TT-----ESEEE-ESSS---GGGEST--BT--T
T ss_pred ---CC--C-------CCCccCCCCCHHHHHHHHHHHHHHHHHHHHH-CCC---CccEEE-eCcc---cccccc--Cc--C
Confidence 00 0 0012344333333335566666677666655 454 466553 1100 001111 00 0
Q ss_pred CcccChhH-HHHHHHHHHHhhccCCCeEEEE
Q 003230 502 GFATDVDA-VVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 502 g~~~d~~~-~~fl~~~~~~v~~~~P~~~~ia 531 (837)
|...+.+. ..+|+...++|++..|++.++-
T Consensus 144 g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 144 GKPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp TCTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 11223222 3567777788999888755543
No 100
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=92.45 E-value=0.19 Score=61.99 Aligned_cols=86 Identities=20% Similarity=0.358 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCEEEEeeccccccCCCcccccCC-CCCCCCccccCCCCCccc---C--CCCCCCCCCHHHHHHHHHHH-H
Q 003230 391 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSNA-R 463 (837)
Q Consensus 391 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f-dg~~~~yf~~~~~g~~~~---w--~~~~ln~~~~eV~~~l~~~l-~ 463 (837)
+||+.+|++||++|.=+.|.=..... .| .+....||..+.+|..+. | .+.-+||.||++|+...+.. .
T Consensus 325 ~mi~~l~~~Gikl~~~i~P~i~~d~~-----~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~ 399 (772)
T COG1501 325 QMIAELHEKGIKLIVIINPYIKQDSP-----LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKK 399 (772)
T ss_pred HHHHHHHhcCceEEEEeccccccCCc-----hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHh
Confidence 99999999999999988774332221 11 123345666655543322 3 35789999999999999644 5
Q ss_pred HHHHHcCCCeEEEcccccc
Q 003230 464 WWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 464 ~Wl~e~gvDGfR~D~v~~m 482 (837)
.+++ +|||||-.|.-.-.
T Consensus 400 ~l~d-~Gv~g~W~D~nEp~ 417 (772)
T COG1501 400 NLLD-LGVDGFWNDMNEPE 417 (772)
T ss_pred HHHh-cCccEEEccCCCCc
Confidence 5666 99999999986543
No 101
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=92.16 E-value=3.7 Score=46.18 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=98.5
Q ss_pred HHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC-------CCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003230 336 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-------SRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~-------~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
...|. +.|+.+..+.+|.++|== ....+|.+.+..|=.+. ..|=|.+|+++||+-|.++||.||-.+-
T Consensus 17 ~~~ik-~~Id~ma~~KlN~lh~Hl----tDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID 91 (348)
T cd06562 17 VDSIK-RTIDAMAYNKLNVLHWHI----TDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID 91 (348)
T ss_pred HHHHH-HHHHHHHHhCCcEEEEeE----EcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc
Confidence 34455 688899999999988620 01112333322222211 1122899999999999999999998885
Q ss_pred -cccccCCC--cccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccccccc
Q 003230 409 -HSHASNNV--LDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 485 (837)
Q Consensus 409 -~NH~s~~~--~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~ 485 (837)
|.|+..-. ...+.. .+ ...+... ...-....||..+|++.+++.+.+.-.++-|... .=|+
T Consensus 92 ~PGH~~a~~~~~p~l~~-~~--~~~~~~~----~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~------~iHi--- 155 (348)
T cd06562 92 TPGHTGSWGQGYPELLT-GC--YAVWRKY----CPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDK------YFHL--- 155 (348)
T ss_pred CchhhHHHHHhChhhhC-CC--Ccccccc----ccCCCCccccCCChhHHHHHHHHHHHHHHhcCCc------ceEe---
Confidence 78885421 000100 00 0000000 0001124689999999999999999999855411 1122
Q ss_pred ccCccccccCCccc---------ccCcccChhH--HHHHHHHHHHhhccCCCeEEEEecCCC
Q 003230 486 HHGLQVAFTGNYSE---------YFGFATDVDA--VVYLMLVNDMIHGLYPEAVSIGEDVSG 536 (837)
Q Consensus 486 ~~g~~~~f~~~~~~---------~~g~~~d~~~--~~fl~~~~~~v~~~~P~~~~iaE~~~~ 536 (837)
|-.....+.|.. ..|. .+... ..|++.+.+.+++.....++-.|...+
T Consensus 156 --GgDE~~~~~w~~~p~~~~~m~~~g~-~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~ 214 (348)
T cd06562 156 --GGDEVNFNCWNSNPEIQKFMKKNNG-TDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDN 214 (348)
T ss_pred --ecCCCCCCcccCCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccC
Confidence 221111112211 0111 11111 258889999999887777777776643
No 102
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=91.40 E-value=0.3 Score=54.75 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=79.1
Q ss_pred CHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 335 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-.++. +.+..+++.|+ +.|+|=.=+. .+|.. |..++ +|- +.+.||+++|++|++|++-+.+--
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD~~~~------~~~~~---f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v 88 (339)
T cd06603 22 DQEDVK-EVDAGFDEHDIPYDVIWLDIEHT------DGKRY---FTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHI 88 (339)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEChHHh------CCCCc---eEeCcccCC---CHHHHHHHHHHCCCEEEEEecCce
Confidence 345565 57888888776 6676642211 12221 34443 665 458899999999999999876543
Q ss_pred ccCCCcccccCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHH--HcCCCeEEEccc
Q 003230 412 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLE--EYKFDGFRFDGV 479 (837)
Q Consensus 412 ~s~~~~~~~~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~~eV~~~l~~~l~~Wl~--e~gvDGfR~D~v 479 (837)
..+. ....| ++....||.....+. ...| ....+|+.||++++...+.++..+. ..++|||-+|..
T Consensus 89 -~~~~--~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 89 -KRDD--GYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred -ecCC--CCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 2221 00011 122223444333221 1123 2357999999999999999998886 468999999964
No 103
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.91 E-value=3.4 Score=46.06 Aligned_cols=164 Identities=13% Similarity=0.211 Sum_probs=93.7
Q ss_pred HHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccc--------------------c--CCCCCCCCHHHHHHHH
Q 003230 336 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNF--------------------F--APSSRCGTPDDLKSLI 393 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y--------------------~--a~~~~~Gt~edfk~LV 393 (837)
...|. +.|+.+..+++|.++|== .+ +|++.+..+ . .....+=|.+|+|+||
T Consensus 16 ~~~ik-~~id~ma~~K~N~lhlHl-----tD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 88 (326)
T cd06564 16 MDFLK-DIIKTMSWYKMNDLQLHL-----ND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELI 88 (326)
T ss_pred HHHHH-HHHHHHHHcCCceEEEee-----cC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHH
Confidence 34555 688999999999998710 00 122211111 0 1112233899999999
Q ss_pred HHHHHcCCEEEEeec-cccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 003230 394 DKAHELGLLVLMDIV-HSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFD 472 (837)
Q Consensus 394 ~~aH~~GI~VIlDvV-~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvD 472 (837)
+-|.++||.||-.+- +.|+..-- ..+. .+..... ........||..+|++.+++.+.+.-.++-|..
T Consensus 89 ~yA~~rgI~vIPEID~PGH~~a~~----~~~p-----el~~~~~--~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~- 156 (326)
T cd06564 89 AYAKDRGVNIIPEIDSPGHSLAFT----KAMP-----ELGLKNP--FSKYDKDTLDISNPEAVKFVKALFDEYLDGFNP- 156 (326)
T ss_pred HHHHHcCCeEeccCCCcHHHHHHH----HhhH-----HhcCCCc--ccCCCcccccCCCHHHHHHHHHHHHHHHHhcCC-
Confidence 999999999998774 67874311 1110 0000000 001123568999999999999999999985541
Q ss_pred eEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHHhhccCCCeEEEEecC
Q 003230 473 GFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAVSIGEDV 534 (837)
Q Consensus 473 GfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~~~~~v~~~~P~~~~iaE~~ 534 (837)
.+-.=|| |-. |........+ -..|++.+.+.+++.....++-.|..
T Consensus 157 ---~~~~~Hi-----GgD--------E~~~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~ 203 (326)
T cd06564 157 ---KSDTVHI-----GAD--------EYAGDAGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGI 203 (326)
T ss_pred ---CCCEEEe-----ccc--------cccccCccHHHHHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 0111122 211 1111111112 24789999999988866666655544
No 104
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=90.16 E-value=2.7 Score=44.95 Aligned_cols=87 Identities=16% Similarity=0.249 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHH
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWW 465 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~W 465 (837)
..++..++++||++|++|++=|- ++.. .. |. . -..+++.|+.+++++.-+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~--------------~~-~~------------~--~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSP--------------PE-FT------------A--ALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCC--------------Cc-ch------------h--hhcCHHHHHHHHHHHHHH
Confidence 46789999999999999998542 1110 00 00 0 235688899999999999
Q ss_pred HHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhcc
Q 003230 466 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 523 (837)
Q Consensus 466 l~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~ 523 (837)
+++|++||+=+|--.- +. ....-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~--------------------~~-~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGP--------------------DV-TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeecc--------------------Cc-cHhHHHHHHHHHHHHHhhc
Confidence 9999999999995210 00 0112346899999999764
No 105
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=90.10 E-value=2.9 Score=46.08 Aligned_cols=167 Identities=14% Similarity=0.064 Sum_probs=96.0
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCC-----------CCCCCCHHHHHHHHHHHHHcCCEE
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAP-----------SSRCGTPDDLKSLIDKAHELGLLV 403 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~-----------~~~~Gt~edfk~LV~~aH~~GI~V 403 (837)
+...|. +.|+.+..+++|.++|==. ...+|.+....|=.+ ...+=|.+|+++||+-|.++||.|
T Consensus 14 ~~~~lk-~~id~ma~~K~N~lhlHl~----D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~v 88 (303)
T cd02742 14 SVESIK-RTIDVLARYKINTFHWHLT----DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEeee----cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEE
Confidence 445555 6899999999999986311 011222222222111 111337999999999999999999
Q ss_pred EEeec-cccccCCCcccccCCCCC-CCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccc
Q 003230 404 LMDIV-HSHASNNVLDGLNMFDGT-DGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (837)
Q Consensus 404 IlDvV-~NH~s~~~~~~~~~fdg~-~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 481 (837)
|-.+- +.|+..-- ..+... ..++- +..+.-....||..+|++.+++.+.+.-+++-|. +-.=|
T Consensus 89 iPEiD~PGH~~a~~----~~~p~l~~~~~~-----~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~------~~~iH 153 (303)
T cd02742 89 IPEIDMPGHSTAFV----KSFPKLLTECYA-----GLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFP------DRYLH 153 (303)
T ss_pred EEeccchHHHHHHH----HhCHHhccCccc-----cCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCC------CCeEE
Confidence 98885 78885421 111000 00110 0001111246899999999999999999998441 11112
Q ss_pred ccccccCccccccCCcccccCccc-ChhHHHHHHHHHHHhhccCCCeEEEEecC
Q 003230 482 MMYTHHGLQVAFTGNYSEYFGFAT-DVDAVVYLMLVNDMIHGLYPEAVSIGEDV 534 (837)
Q Consensus 482 m~~~~~g~~~~f~~~~~~~~g~~~-d~~~~~fl~~~~~~v~~~~P~~~~iaE~~ 534 (837)
+ |- .|.+.... ...-..|++.+.+.+++.....++-+|..
T Consensus 154 i-----Gg--------DE~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~ 194 (303)
T cd02742 154 I-----GG--------DEAHFKQDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGF 194 (303)
T ss_pred e-----cc--------eecCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 2 21 11111111 11124788999999988876666666654
No 106
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=90.00 E-value=1.6 Score=53.33 Aligned_cols=131 Identities=20% Similarity=0.308 Sum_probs=79.5
Q ss_pred CCHHhhHhhhhhHHHHcCCC--EEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 334 NTYANFRDDVLPRIKRLGYN--AVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 334 Gt~~~~~~~~LdyLk~LGvt--~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+++..+. +...+++++|+. ++|.-=-+.. + -.||..=...|++ ++.+|+.+|++|+|+|+=+-++-
T Consensus 308 ~nls~~~-dvv~~~~~agiPld~~~~DiDyMd------~--ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVR-DVVENYRAAGIPLDVIVIDIDYMD------G--YKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHH-HHHHHHHHcCCCcceeeeehhhhh------c--ccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5667777 589999999986 5553211110 1 1333222345665 99999999999999987665432
Q ss_pred ccCCCcccccCCC-CCCCCccccCCCCCc------ccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 003230 412 ASNNVLDGLNMFD-GTDGHYFHSGSRGYH------WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 412 ~s~~~~~~~~~fd-g~~~~yf~~~~~g~~------~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
..... ...|+ |.....+-....|.. |.-...-.|+.||.+.....+.++..-++.++|||-+|+-
T Consensus 376 s~~~~---y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 376 STNSS---YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred ccCcc---chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECC
Confidence 21111 01111 211122221111222 2113356899999999998888888888899999999984
No 107
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=89.79 E-value=0.87 Score=45.71 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=45.3
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+.+.+++++|+++|-|.=. .+...-+.++.++...-..+..+-+..+.++|.+.||+|++-+-++
T Consensus 24 ~~~~~m~~~GidtlIlq~~----~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWT----GYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCcEEEEEEe----ecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 6899999999999987621 1122333344442222223567889999999999999999987655
No 108
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=89.73 E-value=0.71 Score=57.98 Aligned_cols=128 Identities=13% Similarity=0.219 Sum_probs=78.6
Q ss_pred HHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 336 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 336 ~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~~-~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
-..+. +.+..+++.|| ++|||-- .+. .||.+ |..++ +|-. .++||+.+|++|+++|+=+.+ ++
T Consensus 200 q~eV~-eva~~fre~~IP~DvIwlDi----dYm--~g~~~---FTwD~~rFPd---P~~mv~~Lh~~G~kvv~iidP-gI 265 (978)
T PLN02763 200 AKRVA-EIARTFREKKIPCDVVWMDI----DYM--DGFRC---FTFDKERFPD---PKGLADDLHSIGFKAIWMLDP-GI 265 (978)
T ss_pred HHHHH-HHHHHHHHcCCCceEEEEeh----hhh--cCCCc---eeECcccCCC---HHHHHHHHHHCCCEEEEEEcC-CC
Confidence 34555 57888888887 6777642 111 13332 44443 6754 479999999999999875544 33
Q ss_pred cCCCcccccCC-CCCCCCccccCCCCC---cccCC--CCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 413 SNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 413 s~~~~~~~~~f-dg~~~~yf~~~~~g~---~~~w~--~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
..+. +...| .|....+|.....|. ...|. ..-.||.||++|++..+.++.+++ .|||||-+|+-.
T Consensus 266 ~~d~--gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 266 KAEE--GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred ccCC--CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCCC
Confidence 2211 11111 122223443332221 12332 244799999999999999998888 899999999753
No 109
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=89.42 E-value=6 Score=44.20 Aligned_cols=167 Identities=14% Similarity=0.127 Sum_probs=95.4
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC------------CCCCCHHHHHHHHHHHHHcCCE
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS------------SRCGTPDDLKSLIDKAHELGLL 402 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~------------~~~Gt~edfk~LV~~aH~~GI~ 402 (837)
+...|. +.||.+...++|.++|=-.-. .+|......|=.+. ..|=|.+|+++||+-|.++||.
T Consensus 16 ~~~~lk-~~id~ma~~KlN~lhlHLtD~----~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 16 TVAEVK-RYIDLLALYKLNVLHLHLTDD----QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEEeecC----CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 344555 688999999999998733211 12333332221111 1223799999999999999999
Q ss_pred EEEeec-cccccCCCc--ccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 003230 403 VLMDIV-HSHASNNVL--DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 403 VIlDvV-~NH~s~~~~--~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
||-.+- +.|+..--. ..+.. .+.....+. ........||..+|++.+++.+.+.-.++-|. + . .
T Consensus 91 vIPEiD~PGH~~a~~~~~p~l~~-~~~~~~~~~------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~--~---~-~ 157 (329)
T cd06568 91 VVPEIDMPGHTNAALAAYPELNC-DGKAKPLYT------GIEVGFSSLDVDKPTTYEFVDDVFRELAALTP--G---P-Y 157 (329)
T ss_pred EEEecCCcHHHHHHHHhChhhcc-CCCCCcccc------ccCCCCcccCCCCHHHHHHHHHHHHHHHHhCC--C---C-e
Confidence 998875 678753110 00111 111111110 11112346899999999999999999887432 1 1 1
Q ss_pred ccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccCCCeEEEEec
Q 003230 480 TSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGED 533 (837)
Q Consensus 480 ~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~iaE~ 533 (837)
=|+ |-. |..... ...-..|++.+.+.+++.....++-.|.
T Consensus 158 iHi-----GgD--------E~~~~~-~~~~~~f~~~~~~~v~~~Gk~~~~W~d~ 197 (329)
T cd06568 158 IHI-----GGD--------EAHSTP-HDDYAYFVNRVRAIVAKYGKTPVGWQEI 197 (329)
T ss_pred EEE-----ecc--------cCCCCc-hHHHHHHHHHHHHHHHHCCCeEEEECcc
Confidence 122 211 221111 1122368999999998876656655554
No 110
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=88.53 E-value=2.4 Score=47.71 Aligned_cols=149 Identities=18% Similarity=0.088 Sum_probs=82.5
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL 420 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~ 420 (837)
++-+.-+|++|...|-|+.-.. ....-|-=..++|..++..+ ..|=+++|+++|+++||++.+ -+++. .-+
T Consensus 94 dqW~~~ak~aGakY~VlTakHH-DGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~--Y~S~~-dw~---- 164 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHH-DGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL--YYSPW-DWH---- 164 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-T-T--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE--EEESS-SCC----
T ss_pred HHHHHHHHHcCCCEEEeehhhc-CccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE--Eecch-Hhc----
Confidence 3567889999999998877553 33334444455555555333 358899999999999999998 23322 111
Q ss_pred cCCCCCCCCccccCCCCCcccCCCCCCCCC-CHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCccc
Q 003230 421 NMFDGTDGHYFHSGSRGYHWMWDSRLFNYG-SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSE 499 (837)
Q Consensus 421 ~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~-~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~ 499 (837)
. +.|.. ...... .......-. ...+.++...-++-.++.|.+|.+=||+...-
T Consensus 165 ~------~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~----------------- 218 (346)
T PF01120_consen 165 H------PDYPP-DEEGDE--NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD----------------- 218 (346)
T ss_dssp C------TTTTS-SCHCHH--CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC-----------------
T ss_pred C------cccCC-CccCCc--ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc-----------------
Confidence 0 01100 000000 000000000 11245578888999999999999999986311
Q ss_pred ccCcccChhHHHHHHHHHHHhhccCCCeEEEE
Q 003230 500 YFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 500 ~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~ia 531 (837)
..+.. ....+.+.+++..|++++..
T Consensus 219 ------~~~~~-~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 219 ------PDEDW-DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp ------CCTHH-HHHHHHHHHHHHSTTSEEEC
T ss_pred ------ccccc-CHHHHHHHHHHhCCeEEEec
Confidence 01111 23667788888899888765
No 111
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=88.28 E-value=1.7 Score=46.89 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=61.8
Q ss_pred CCHHhhHhhhhhHHHHcCC--CEEEEcCcccCCCCCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 334 NTYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 334 Gt~~~~~~~~LdyLk~LGv--t~I~LmPi~e~~~~~s~GY~v~~y~a~~-~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
.+-.++. +.+..+++.|+ ++|+|-.=+.... ..++ +..+ .+|-+ .++||+.+|++|++|++-+.+.
T Consensus 21 ~~~~~v~-~~~~~~~~~~iP~d~~~lD~~~~~~~-~~f~------~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 21 GDQDKVL-EVIDGMRENDIPLDGFVLDDDYTDGY-GDFT------FDWDAGKFPN---PKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred CCHHHHH-HHHHHHHHcCCCccEEEECcccccCC-ceee------eecChhhCCC---HHHHHHHHHHCCCEEEEEeChh
Confidence 3556666 58888888766 6787754433221 2221 1333 36654 5789999999999999976542
Q ss_pred cccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 411 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 411 H~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
+ ++...+.++..+.++|||||-+|...
T Consensus 90 -v------------------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 90 -I------------------------------------------REWWAEVVKKLLVSLGVDGFWTDMGE 116 (265)
T ss_pred -H------------------------------------------HHHHHHHHHHhhccCCCCEEeccCCC
Confidence 1 56666666666566999999999754
No 112
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=88.00 E-value=12 Score=40.57 Aligned_cols=167 Identities=15% Similarity=0.102 Sum_probs=93.7
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHH-HHH-HHHHHcCCEEEEeeccccccCCCcc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK-SLI-DKAHELGLLVLMDIVHSHASNNVLD 418 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk-~LV-~~aH~~GI~VIlDvV~NH~s~~~~~ 418 (837)
+..|++|+++|+|+|+|-++.+....+. +..-|=|+.+.--..||- +.+ +...+.|++|..-+..=-
T Consensus 20 ~~l~~ri~~~~~~tV~Lqaf~d~~gdg~----~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvla------- 88 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQAFADPDGDGN----ADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLA------- 88 (294)
T ss_pred HHHHHHHHHcCCCEEEEEeeeCCCCCCc----eeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhh-------
Confidence 3688999999999999999887654332 222344555665555554 444 344489999987765411
Q ss_pred cccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEE-cccccccccccCccccccCCc
Q 003230 419 GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRF-DGVTSMMYTHHGLQVAFTGNY 497 (837)
Q Consensus 419 ~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~-D~v~~m~~~~~g~~~~f~~~~ 497 (837)
|+-....+...........-+..-|..-+|++|+.|.+...-...--.|||+=| |-+- + .|+.++.. .
T Consensus 89 ----f~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~--L-~D~E~~~~----~ 157 (294)
T PF14883_consen 89 ----FDLPKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAV--L-SDFEIAAI----R 157 (294)
T ss_pred ----ccCCCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCcc--c-cchhhhhh----c
Confidence 111111111000000000111245667789999999999999998449999988 3321 1 11111000 0
Q ss_pred ccccCcccChhHHHHHHHHHHHhhccCCCeEE
Q 003230 498 SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS 529 (837)
Q Consensus 498 ~~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~ 529 (837)
.+-........-+.|..++.+.++...|++.+
T Consensus 158 ~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 158 QNPADRQKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHhCccchh
Confidence 00000000112258899999999998887554
No 113
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=87.94 E-value=7.1 Score=44.57 Aligned_cols=115 Identities=22% Similarity=0.172 Sum_probs=74.3
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCccccc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 421 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~ 421 (837)
+-+.-+|+.|...|-|+.-.. ....-|-=..++|.+++..+ ..|-+++|+++|+++||++-+ -++ ..+ +
T Consensus 85 ~Wa~~~k~AGakY~vlTaKHH-DGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~--Y~S--~~D---W-- 153 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKHH-DGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL--YHS--LFD---W-- 153 (384)
T ss_pred HHHHHHHHcCCCeEEeeeeec-CCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE--EcC--HHH---h--
Confidence 567889999999998776543 22233444456666666655 568899999999999999998 222 111 1
Q ss_pred CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHH---HHHHHHHHHHcCCCeEEEccc
Q 003230 422 MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFL---LSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 422 ~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l---~~~l~~Wl~e~gvDGfR~D~v 479 (837)
+ .+.|... ++........+...+|+ ..-++-.++.||-|.+=||..
T Consensus 154 -~---~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 154 -F---NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred -C---CCccccc--------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 0 1122110 00011122334566777 788888888999999999975
No 114
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=87.83 E-value=1.4 Score=39.48 Aligned_cols=58 Identities=21% Similarity=0.395 Sum_probs=39.7
Q ss_pred EEEEEeCC--CcCeEEEEe---ecCCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003230 205 ITYREWAP--GAKSASLIG---DFNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 268 (837)
Q Consensus 205 v~FrvWAP--~A~~V~Lvg---DFN~w~~~-~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~ 268 (837)
++|++=+. -.++|.|+| ++++|++. +.+|...+.+.|++.+.-.. +. ...|||.+...
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~-~~-----~~eYKy~~~~~ 66 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPA-GT-----AIEYKYIKKDG 66 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCC-CC-----eEEEEEEEECC
Confidence 45665433 347899999 48899975 57998888899988875322 11 25788876543
No 115
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.33 E-value=1.7 Score=49.24 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=64.3
Q ss_pred hhhhhHHHHcCCCEEEEcCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL 417 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~---~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~ 417 (837)
++.|..+|++|+|+|.|..+.-. |..+. | .-+.|.++|+.|+++||+|||-+.. +.. +
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~--y-------------dF~~lD~~l~~a~~~Gi~viL~~~~-~~~---P 73 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQ--Y-------------DFSWLDRVLDLAAKHGIKVILGTPT-AAP---P 73 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB------------------HHHHHHHHHHHCTT-EEEEEECT-TTS----
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCe--e-------------ecHHHHHHHHHHHhccCeEEEEecc-ccc---c
Confidence 46899999999999998765321 21111 1 2345889999999999999997762 222 1
Q ss_pred ccccCCCCCCCCccccCCCCCcccCCC-CCCCCCCHHHHHHHHHHHHHHHHHcC----CCeEEEc
Q 003230 418 DGLNMFDGTDGHYFHSGSRGYHWMWDS-RLFNYGSWEVLRFLLSNARWWLEEYK----FDGFRFD 477 (837)
Q Consensus 418 ~~~~~fdg~~~~yf~~~~~g~~~~w~~-~~ln~~~~eV~~~l~~~l~~Wl~e~g----vDGfR~D 477 (837)
.++.. ..+.-...+..|....++. ..+++.+|.+|+++...++..++.|+ |-|+-+|
T Consensus 74 ~Wl~~---~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~ 135 (374)
T PF02449_consen 74 AWLYD---KYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID 135 (374)
T ss_dssp HHHHC---CSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC
T ss_pred cchhh---hcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec
Confidence 22211 0011111112222222222 34678899999998888777776665 4455554
No 116
>PRK12568 glycogen branching enzyme; Provisional
Probab=85.75 E-value=1.8 Score=53.08 Aligned_cols=78 Identities=21% Similarity=0.277 Sum_probs=53.9
Q ss_pred hhcccccCCcEEeCCc-EEEEEeCCCcCeEEEEeecCCCCCCcccccc-CCCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003230 189 FSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (837)
Q Consensus 189 f~~~y~~lG~~~~~~g-v~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~-~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~ 266 (837)
+..-+..||.|...+| +.+|+|-|.|.+|.|+.. . .....+|.+ .+.|+|+..+|.. ..|++++.
T Consensus 23 ~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~--~~~~~~~~~~~~~g~f~~~~~~~----------~~y~~~~~ 89 (730)
T PRK12568 23 PADAFAVLGPHPQADGRRQVRVLAPGAEAMGLIDG-R--GKLLARMQASPIDGVFEGILPAD----------GPYRLRIV 89 (730)
T ss_pred cCCchHhcCCcCCCCCcEEEEEECCCCcEEEEEec-C--CccccccEecCCCCeEEEecCCC----------CCEEEEEE
Confidence 4455678999988888 699999999999999741 1 111237887 4679999999842 12777776
Q ss_pred CCCCccccCCccc
Q 003230 267 TPSGIKDSIPAWI 279 (837)
Q Consensus 267 ~~~~~~~~~~~~~ 279 (837)
..++.....+||.
T Consensus 90 ~~~~~~~~~dpy~ 102 (730)
T PRK12568 90 WPDVVQEIEDPYA 102 (730)
T ss_pred eCCceEEeecccc
Confidence 5444334455665
No 117
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=85.13 E-value=0.65 Score=55.63 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCC-CCCcEEEEee---cCCCcEEEEEcC----cEEEEEECC
Q 003230 713 FDRAMQHLEEKYGFM-TSEHQYVSRK---DEGDRVIVFERG----NLVFVFNFH 758 (837)
Q Consensus 713 f~r~Li~LR~~~~~L-~~g~~~i~~~---~~~~~Vlaf~R~----~llvv~Nf~ 758 (837)
...+++++|++++.+ ..|. ++-.. ...++|+||.|+ .+|+|.+..
T Consensus 775 v~~~aL~lR~~~~elF~~Gd-Y~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Prl 827 (889)
T COG3280 775 VTAAALRLRREHPELFAGGD-YLPLFAAGPAADHVIAFARGKDDQFAITVAPRL 827 (889)
T ss_pred HHHHHHHHHHhchHhhcCCC-eeeecccCchhHHHHHHhhccCCceeEEeehHH
Confidence 567888999999764 4443 22222 234779999993 456555543
No 118
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=83.96 E-value=2.3 Score=47.64 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003230 391 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 391 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~g 470 (837)
..|++||++|++|+-=+.+..... . ...+ ..|- .+++.+..+++.|.-.++.||
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~-----------~--~~~~------------~lL~-~~~~~~~~~a~kLv~lak~yG 103 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQ-----------V--EWLE------------DFLK-KDEDGSFPVADKLVEVAKYYG 103 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCc-----------h--HHHH------------HHhc-cCcccchHHHHHHHHHHHHhC
Confidence 578999999999998554332100 0 0000 0000 113445566677777788899
Q ss_pred CCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHHhhccCCCeEEE
Q 003230 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEAVSI 530 (837)
Q Consensus 471 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~-~~fl~~~~~~v~~~~P~~~~i 530 (837)
+||+=+|.=... +...+.+. ..|++++++.+++..|+..+|
T Consensus 104 fDGw~iN~E~~~-------------------~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 104 FDGWLINIETEL-------------------GDAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CCceEeeeeccC-------------------CcHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 999999853221 01123333 479999999999988876554
No 119
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=83.72 E-value=19 Score=39.78 Aligned_cols=167 Identities=17% Similarity=0.128 Sum_probs=94.7
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCc--ccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeec-ccc
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAV--QEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV-HSH 411 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi--~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV-~NH 411 (837)
+...|. +.++.++.+|+|.++|==- ++.+.....++ ....=|.+|++++++-|.++||.||-.+- +.|
T Consensus 15 ~~~~lk-~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~--------~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH 85 (301)
T cd06565 15 KVSYLK-KLLRLLALLGANGLLLYYEDTFPYEGEPEVGR--------MRGAYTKEEIREIDDYAAELGIEVIPLIQTLGH 85 (301)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEecceecCCCccccc--------CCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHH
Confidence 344555 6899999999999997211 11111111111 11222799999999999999999997654 677
Q ss_pred ccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccc
Q 003230 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQV 491 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~ 491 (837)
+..- +. . +.|-....... ....+|..+|++.+++.+.+.-.++-|.- ..+ |+ |-..
T Consensus 86 ~~~~----l~-~----~~~~~l~~~~~----~~~~l~~~~~~t~~fi~~li~ev~~~f~s-----~~~-HI-----G~DE 141 (301)
T cd06565 86 LEFI----LK-H----PEFRHLREVDD----PPQTLCPGEPKTYDFIEEMIRQVLELHPS-----KYI-HI-----GMDE 141 (301)
T ss_pred HHHH----Hh-C----cccccccccCC----CCCccCCCChhHHHHHHHHHHHHHHhCCC-----CeE-EE-----CCCc
Confidence 6431 11 0 01110000000 02468999999999999999999985441 111 22 2111
Q ss_pred ccc---CCcccccCcc-cChhHHHHHHHHHHHhhccCCCeEEEEecC
Q 003230 492 AFT---GNYSEYFGFA-TDVDAVVYLMLVNDMIHGLYPEAVSIGEDV 534 (837)
Q Consensus 492 ~f~---~~~~~~~g~~-~d~~~~~fl~~~~~~v~~~~P~~~~iaE~~ 534 (837)
.+. +.+....+.. ...--..|++.+.+.+++..+..++-+|..
T Consensus 142 ~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~ 188 (301)
T cd06565 142 AYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDML 188 (301)
T ss_pred ccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHh
Confidence 111 0111111111 111224789999999999888776666554
No 120
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.33 E-value=26 Score=39.55 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeec-cccccCCCc--ccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDIV-HSHASNNVL--DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSN 461 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV-~NH~s~~~~--~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~ 461 (837)
|.+|+++||+-|.++||.||-.+- +.|+..--. ..+... +....+... .......||..+|++.+++.+.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~-~~~~~~~~~------~~~~~~~L~~~~~~t~~f~~~l 156 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCT-GGPGSVVSV------QGVVSNVLCPGKPETYTFLEDV 156 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCC-CCCCccccc------cCcCCCccCCCChhHHHHHHHH
Confidence 799999999999999999998875 688743110 001110 111011000 0112346899999999999999
Q ss_pred HHHHHHHcCCCeEEEcccccccccccCccccccCCccc---------ccCcccChh-H-HHHHHHHHHHhhccCCCeEEE
Q 003230 462 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSE---------YFGFATDVD-A-VVYLMLVNDMIHGLYPEAVSI 530 (837)
Q Consensus 462 l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~---------~~g~~~d~~-~-~~fl~~~~~~v~~~~P~~~~i 530 (837)
+.-.++-|.-. . =|+ |-...+...|.. ..|. .+.. . ..|++.+.+.+++.....++-
T Consensus 157 l~E~~~lF~~~-----~-iHi-----GgDE~~~~~w~~~~~~~~~~~~~g~-~~~~~l~~~f~~~~~~~v~~~G~~~i~W 224 (357)
T cd06563 157 LDEVAELFPSP-----Y-IHI-----GGDEVPKGQWEKSPACQARMKEEGL-KDEHELQSYFIKRVEKILASKGKKMIGW 224 (357)
T ss_pred HHHHHHhCCCC-----e-EEE-----eccccCCcccccCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 99999854311 1 122 222222222211 0111 1111 1 258899999998876666655
Q ss_pred EecC
Q 003230 531 GEDV 534 (837)
Q Consensus 531 aE~~ 534 (837)
.|..
T Consensus 225 ~d~~ 228 (357)
T cd06563 225 DEIL 228 (357)
T ss_pred eccc
Confidence 5543
No 121
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=81.61 E-value=2.9 Score=36.53 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.4
Q ss_pred CCCcEEEEEc----CcEEEEEECCC
Q 003230 739 EGDRVIVFER----GNLVFVFNFHW 759 (837)
Q Consensus 739 ~~~~Vlaf~R----~~llvv~Nf~~ 759 (837)
..++|++|.| +.++||+|.+.
T Consensus 7 P~~gvYvYfR~~~~~tVmVilN~n~ 31 (78)
T PF10438_consen 7 PQDGVYVYFRYYDGKTVMVILNKND 31 (78)
T ss_dssp -BTTEEEEEEEESSEEEEEEEE-SS
T ss_pred ccCCEEEEEEEcCCCEEEEEEcCCC
Confidence 4678999999 57999999984
No 122
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=81.17 E-value=2.3 Score=38.32 Aligned_cols=60 Identities=23% Similarity=0.452 Sum_probs=40.6
Q ss_pred EEEEEeCC--CcCeEEEEeecC---CCCC-CccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003230 205 ITYREWAP--GAKSASLIGDFN---NWNP-NADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 205 v~FrvWAP--~A~~V~LvgDFN---~w~~-~~~~m~~~----~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~ 270 (837)
++|++-+. -.++|.|+|+.. +|++ .+.+|... ...+|++.|.-.. +. -..|||.+...+|
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~-----~~eYKy~i~~~~g 73 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GT-----PFEYKYVIKDADG 73 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TS-----EEEEEEEEEETTS
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CC-----EEEEEEEEEeCCC
Confidence 67887332 336899999875 7997 56788865 4589999985322 22 2478888765544
No 123
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=81.03 E-value=6.2 Score=35.87 Aligned_cols=60 Identities=20% Similarity=0.417 Sum_probs=42.8
Q ss_pred EEEEEeCCCc---CeEEEEee---cCCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC
Q 003230 205 ITYREWAPGA---KSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 269 (837)
Q Consensus 205 v~FrvWAP~A---~~V~LvgD---FN~w~~~-~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~ 269 (837)
++|++-.|.. +.|+|+|+ +.+|++. +.+|...+...|++.++-.... ....|||.+...+
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~-----~~ieYKyvi~~~~ 68 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDS-----FPFEYKYIIANKD 68 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCC-----ccEEEEEEEEeCC
Confidence 6899998853 68999987 4689864 4689888889998888643211 1247898876543
No 124
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=80.84 E-value=6.2 Score=43.68 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 464 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~ 464 (837)
+.+++++-|+.||++|++||+-+= . ..+ . ....++.-++.+++++.-
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSiG-----G--------~~~---~-----------------~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISIG-----G--------ANG---H-----------------VDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEe-----C--------CCC---c-----------------cccCCHHHHHHHHHHHHH
Confidence 568899999999999999998641 0 000 0 013456778889999999
Q ss_pred HHHHcCCCeEEEcc
Q 003230 465 WLEEYKFDGFRFDG 478 (837)
Q Consensus 465 Wl~e~gvDGfR~D~ 478 (837)
+++++++||+=||-
T Consensus 105 ~~~~~g~DGiDiD~ 118 (312)
T cd02871 105 IIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHhCCCeEEEec
Confidence 99999999999995
No 125
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=80.15 E-value=5 Score=32.71 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=24.9
Q ss_pred CcEEEEEECCCCCcccceEEcccCCccEEEEEeCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003230 749 GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 749 ~~llvv~Nf~~~~~~~~~~l~~~~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~ 826 (837)
+.++|++||+. ++ ..+.+ +..++++|+.... +-.++|+|+.+.|++
T Consensus 12 ~~y~F~~N~s~-~~---~~v~l--~~~~~dll~g~~~--------------------------~~~~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 12 GRYLFLLNFSD-EP---QTVTL--PESYTDLLTGETV--------------------------SGGLTLPPYGVRVLK 57 (58)
T ss_dssp TTEEEEEE-SS-S----EE------TT-EEEES---------------------------------SEE-TTEEEEEE
T ss_pred CEEEEEEECCC-CC---EEEEc--CCCceecccCcce--------------------------eeEEEECCCEEEEEE
Confidence 57999999994 22 23443 5667888753211 122899999999986
No 126
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=79.92 E-value=9.5 Score=44.47 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeec-cccccCCCc------ccccCCCCCC---CCccccCCC---CC--cccCCCCCCCC
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDIV-HSHASNNVL------DGLNMFDGTD---GHYFHSGSR---GY--HWMWDSRLFNY 449 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV-~NH~s~~~~------~~~~~fdg~~---~~yf~~~~~---g~--~~~w~~~~ln~ 449 (837)
|.+|+++||+-|+++||.||-.|- +.|+..--. ..+.. .|.. ..|...+.. .+ ...|....||-
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~-~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p 173 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMA-AGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINP 173 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhc-cCCccccccccccCcccccccccccccccccccC
Confidence 799999999999999999998875 788753100 00000 1110 011111110 00 11233457999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 003230 450 GSWEVLRFLLSNARWWLEE 468 (837)
Q Consensus 450 ~~~eV~~~l~~~l~~Wl~e 468 (837)
.+|++.+||.+.+.-.++-
T Consensus 174 ~~~~ty~fl~~vl~Ev~~l 192 (445)
T cd06569 174 CMPSTYRFVDKVIDEIARM 192 (445)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 9999999999999999874
No 127
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=79.80 E-value=2.4 Score=52.02 Aligned_cols=90 Identities=14% Similarity=0.215 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccc--cccCCCccccc-----CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHH--HH
Q 003230 387 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLN-----MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVL--RF 457 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~N--H~s~~~~~~~~-----~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~--~~ 457 (837)
.+++++-+.|+++||.+|-|+.+. +-|.+...... .--|.+|.+|... |+ .||.+.+|+..-+-. +.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~--GQ--nWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN--GQ--NWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc--cC--cCCCCCcCHHHHHhcCcHH
Confidence 678888899999999999999874 33333211111 1247777788543 33 478888877421111 12
Q ss_pred HHHHHHHHHHHcCCCeEEEcccccc
Q 003230 458 LLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 458 l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
.++.+++-++ .+|.+|+|.+-.+
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~Gf 372 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHILGF 372 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechhhh
Confidence 3444444444 5899999987553
No 128
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=79.70 E-value=7.2 Score=42.25 Aligned_cols=152 Identities=21% Similarity=0.187 Sum_probs=77.6
Q ss_pred hhHhhhhhHHHHcCCCEEEEcCcccCCCCCC-CCCccccccCCCCCCCCHHHH---HHHHHHHHHcCCEEEEeecccccc
Q 003230 338 NFRDDVLPRIKRLGYNAVQIMAVQEHSYYAS-FGYHVTNFFAPSSRCGTPDDL---KSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 338 ~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s-~GY~v~~y~a~~~~~Gt~edf---k~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
+...+.+.-||+.|||.|-|- |+-.|+..+ -|| -|+..|+ -++-++|.+.||+|++|+-++-.-
T Consensus 63 g~~qD~~~iLK~~GvNyvRlR-vwndP~dsngn~y-----------ggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfw 130 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLR-VWNDPYDSNGNGY-----------GGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFW 130 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEE-EecCCccCCCCcc-----------CCCcchHHHHHHHHHHHHhcCcEEEeeccchhhc
Confidence 444468999999999999763 444454321 122 2333444 456678888999999998654221
Q ss_pred CCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccc
Q 003230 414 NNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAF 493 (837)
Q Consensus 414 ~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f 493 (837)
.+ |.+ ..-.-.|....|+.-...|-+|-..++....+| || -.|.|. +..+ ...+|
T Consensus 131 aD------------Pak-----Q~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e-Gi---~pdmVQ-VGNE---tn~gf 185 (403)
T COG3867 131 AD------------PAK-----QKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE-GI---LPDMVQ-VGNE---TNGGF 185 (403)
T ss_pred cC------------hhh-----cCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC---CccceE-eccc---cCCce
Confidence 11 100 011123433333334455556666666666664 44 456553 1111 01112
Q ss_pred cCCcccccCcccChhHH-HHHHHHHHHhhccCCCeEEE
Q 003230 494 TGNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSI 530 (837)
Q Consensus 494 ~~~~~~~~g~~~d~~~~-~fl~~~~~~v~~~~P~~~~i 530 (837)
-.-++|.. +-+-+ ..+.+...++++..|++.++
T Consensus 186 lwp~Ge~~----~f~k~a~L~n~g~~avrev~p~ikv~ 219 (403)
T COG3867 186 LWPDGEGR----NFDKMAALLNAGIRAVREVSPTIKVA 219 (403)
T ss_pred eccCCCCc----ChHHHHHHHHHHhhhhhhcCCCceEE
Confidence 21122211 22222 34566667777788865443
No 129
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=79.38 E-value=3.7 Score=38.78 Aligned_cols=56 Identities=18% Similarity=0.501 Sum_probs=40.0
Q ss_pred EEEEEeCC---CcCeEEEEee---cCCCCCC-ccccccC--CCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003230 205 ITYREWAP---GAKSASLIGD---FNNWNPN-ADIMTQN--EFGVWEIFLPNNADGSPPIPHGSRVKIHMD 266 (837)
Q Consensus 205 v~FrvWAP---~A~~V~LvgD---FN~w~~~-~~~m~~~--~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~ 266 (837)
++|++-+| -.+.|.|+|+ +.+|++. +.+|.+. ....|++.+.-.. +. -..|||.+.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~-~~-----~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPR-GV-----DFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECC-CC-----eEEEEEEEE
Confidence 78999886 3468999998 8999864 4689876 6789988775321 11 257888764
No 130
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=78.79 E-value=2.4 Score=46.68 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=36.6
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+-|+...+.|++-|.. .+..... | +=+-..-|++|++.||+.|++||+|+-+.
T Consensus 20 ~Yi~~~~~~Gf~~IFt-sl~~~~~---~------------~~~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 20 AYIDRMHKYGFKRIFT-SLLIPEE---D------------AELYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHHHcCccceee-ecccCCc---h------------HHHHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 4677778899999863 2221111 0 00224569999999999999999998765
No 131
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=78.70 E-value=14 Score=40.68 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 003230 389 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEE 468 (837)
Q Consensus 389 fk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e 468 (837)
..++++.||++|++|++=|- +... . .|+ ...|+ --..+++.|+.+++++.-++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~------~~~---~~~~~--------------~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-G------NFD---SELAH--------------AVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-C------CCC---HHHHH--------------HHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999999999997543 1111 0 010 00110 1134688899999999999999
Q ss_pred cCCCeEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHHhhcc
Q 003230 469 YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 523 (837)
Q Consensus 469 ~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~~~~~v~~~ 523 (837)
+|+||+-+|--. + ...+.+ -..|+++++..+++.
T Consensus 102 ~~~DGidiDwE~-~--------------------~~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFEN-V--------------------PPEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEeccc-C--------------------CHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998521 1 011222 357899999999754
No 132
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=78.15 E-value=4.3 Score=44.48 Aligned_cols=66 Identities=27% Similarity=0.452 Sum_probs=37.7
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCC---CCCCCcc--------ccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYY---ASFGYHV--------TNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~---~s~GY~v--------~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
.-|+.+|+-|||.|+++-+.+.... +.-|+.+ .||-.+++.| -+-+.++|+.|.++||.+ ++|+-
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~--~lv~~ 109 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA--ALVPF 109 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE--EEESS
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE--EEEEE
Confidence 5799999999999998766553211 1123222 3555566555 678899999999999988 46665
Q ss_pred c
Q 003230 411 H 411 (837)
Q Consensus 411 H 411 (837)
|
T Consensus 110 w 110 (289)
T PF13204_consen 110 W 110 (289)
T ss_dssp -
T ss_pred E
Confidence 5
No 133
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=77.08 E-value=16 Score=40.47 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=72.5
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC-----CCCCCHHHHHHHHHHHHHcCCEEEEeec-cc
Q 003230 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-----SRCGTPDDLKSLIDKAHELGLLVLMDIV-HS 410 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~-----~~~Gt~edfk~LV~~aH~~GI~VIlDvV-~N 410 (837)
..|. +.|+.+..+++|.++|==.- ..+|.+.+..|=.+. ..|=|.+|+++||+-|.++||.||-.+- +.
T Consensus 18 ~~ik-~~Id~ma~~KlN~lh~HltD----d~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PG 92 (311)
T cd06570 18 AVIK-RQLDAMASVKLNVFHWHLTD----DQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPG 92 (311)
T ss_pred HHHH-HHHHHHHHhCCeEEEEEEec----CCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCcc
Confidence 4454 68899999999977762110 012322222221111 1233899999999999999999998875 78
Q ss_pred cccCCCcccccCCCC---CCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 003230 411 HASNNVLDGLNMFDG---TDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 469 (837)
Q Consensus 411 H~s~~~~~~~~~fdg---~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~ 469 (837)
|+..- +..+.. ....+.. . ..+......||..+|++.+++.+.+.-+++-|
T Consensus 93 H~~a~----~~~ypel~~~~~~~~~--~--~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 93 HASAI----AVAYPELASGPGPYVI--E--RGWGVFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred chHHH----HHhCHHhccCCCcccc--c--cccccCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 87531 111110 0000000 0 01111224699999999999999999999854
No 134
>PLN02316 synthase/transferase
Probab=76.58 E-value=25 Score=45.09 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=31.2
Q ss_pred CCceEEEeecCC-CCCCCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccC
Q 003230 315 KSLRIYEAHVGM-SSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH 363 (837)
Q Consensus 315 ~~~~IYE~hv~~-f~~~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~ 363 (837)
.++.| +||.+ ..+-.++|.+..+..+.-..|+++|.+.--+||-+..
T Consensus 586 ~pM~I--l~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~ 633 (1036)
T PLN02316 586 PPMHI--VHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDC 633 (1036)
T ss_pred CCcEE--EEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence 34666 33332 2233456888777755667789999999889997753
No 135
>PRK14705 glycogen branching enzyme; Provisional
Probab=76.46 E-value=5.6 Score=51.56 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=54.0
Q ss_pred hhcccccCCcEEeCCcE-EEEEeCCCcCeEEEEeecCCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003230 189 FSRGYEKFGFIRSDTGI-TYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 189 f~~~y~~lG~~~~~~gv-~FrvWAP~A~~V~LvgDFN~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~ 267 (837)
+..-+.-||.|..++|+ .+|+|-|.|++|.|+.. ....+|.+...|+|+..+|....+. ...|++++..
T Consensus 516 ~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~y~~~~~~ 585 (1224)
T PRK14705 516 YHAPHSVLGAHLDDHGHVTVRTVKHLAKAVSVVTA-----AGRVPMTHEAHGVWAAVLEPLQAGH-----VPDYRLEVTY 585 (1224)
T ss_pred cCCChHhcCCcCCCCceEEEEEECCCCeEEEEEeC-----CCceeeeeCCCCEEEEeccccccCC-----CCCeEEEEEe
Confidence 34446789999888884 69999999999999842 2234788878899999998421111 0137777765
Q ss_pred CCCc-cccCCccc
Q 003230 268 PSGI-KDSIPAWI 279 (837)
Q Consensus 268 ~~~~-~~~~~~~~ 279 (837)
.++. ....+||.
T Consensus 586 ~~~~~~~~~d~y~ 598 (1224)
T PRK14705 586 DGAEPVTIDDPYH 598 (1224)
T ss_pred CCccceEeccccc
Confidence 4432 23345554
No 136
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=73.55 E-value=7.1 Score=41.40 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=36.0
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 407 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDv 407 (837)
++-|.++|+||+++|+++-=+ ..+ +.++..++|+.+|++|++|+-.+
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~---------------~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGS---------------MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCc---------------cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 356669999999999975321 111 26889999999999999999653
No 137
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=73.44 E-value=7 Score=47.80 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=54.3
Q ss_pred cEEEEEeCCCcCeEEEEeecC-C-CCCC---ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccCCcc
Q 003230 204 GITYREWAPGAKSASLIGDFN-N-WNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAW 278 (837)
Q Consensus 204 gv~FrvWAP~A~~V~LvgDFN-~-w~~~---~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~~~~~~~~~ 278 (837)
|.++++|+|+|+.+.+.+.-. + |++. ...|.+...|.|...|.+......+...+..|.+.+...+...+..+++
T Consensus 68 G~iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 147 (697)
T COG1523 68 GAIWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPY 147 (697)
T ss_pred ccEEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccC
Confidence 449999999999999998432 2 4432 3467788899999999987655533444555555544433224555666
Q ss_pred ceecccCC
Q 003230 279 IKFSVQAP 286 (837)
Q Consensus 279 ~~~~~~~~ 286 (837)
.+.++..+
T Consensus 148 ~Ksvv~~~ 155 (697)
T COG1523 148 PKSVVIDP 155 (697)
T ss_pred CceEEecc
Confidence 66665544
No 138
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=72.39 E-value=72 Score=35.10 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=57.6
Q ss_pred hHHHHcCCCEEEEcCcccC-CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCC
Q 003230 345 PRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF 423 (837)
Q Consensus 345 dyLk~LGvt~I~LmPi~e~-~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~f 423 (837)
.+.++.|+++|-|-=+... .....|+-. ....+...++.-|++|+++|++||+=+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~--------~~~~~~~~~~~~i~~lk~~G~kViiS~---------------- 74 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGS--------YPLDQGGWIKSDIAALRAAGGDVIVSF---------------- 74 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCC--------CCcccchhHHHHHHHHHHcCCeEEEEe----------------
Confidence 4677899999987533222 122345421 011135678888999999999999831
Q ss_pred CCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 003230 424 DGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 424 dg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
-|....++.. +..-++.|..++.-.++.|++||+-||-
T Consensus 75 GG~~g~~~~~-----------------~~~~~~~~~~a~~~~i~~y~~dgiDfDi 112 (294)
T cd06543 75 GGASGTPLAT-----------------SCTSADQLAAAYQKVIDAYGLTHLDFDI 112 (294)
T ss_pred cCCCCCcccc-----------------CcccHHHHHHHHHHHHHHhCCCeEEEec
Confidence 1111111111 2234567777777788889999999985
No 139
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=71.21 E-value=4.3 Score=45.18 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=35.5
Q ss_pred hhhhHHHHcCCCEEEEcCcccC--CCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEH--SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~--~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
++|..+|++|+|+|..-=.+.. +..+ .-| |....||..+++.|+++||.|||-.=+
T Consensus 28 ~~l~k~ka~G~n~v~~yv~W~~he~~~g-----~~d-------f~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 28 DRLQKMKAAGLNTVSTYVPWNLHEPEEG-----QFD-------FTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHHHHTT-SEEEEE--HHHHSSBTT-----B----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHhCCcceEEEeccccccCCCCC-----ccc-------ccchhhHHHHHHHHHHcCcEEEecccc
Confidence 6899999999999975432221 1111 112 223589999999999999999998544
No 140
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=70.92 E-value=13 Score=33.81 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=39.4
Q ss_pred cEEEEEeCCCc---CeEEEEe---ecCCCCCCcccccc---CCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003230 204 GITYREWAPGA---KSASLIG---DFNNWNPNADIMTQ---NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 204 gv~FrvWAP~A---~~V~Lvg---DFN~w~~~~~~m~~---~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~ 270 (837)
.++|++=+|.. +.|+|+| ++.+|+....+|.. ...+.|++.+.-. .|. -..|||.+...++
T Consensus 4 ~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp-~~~-----~veyKyv~~~~~~ 73 (99)
T cd05809 4 PQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLP-AGR-----NIEFKAIKKSKDG 73 (99)
T ss_pred EEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEec-CCC-----cEEEEEEEEcCCC
Confidence 36788755543 6899999 67899876544432 3468998887532 232 2578888765443
No 141
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=70.05 E-value=79 Score=34.34 Aligned_cols=157 Identities=14% Similarity=0.143 Sum_probs=93.3
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCc-cc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL-DG 419 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~-~~ 419 (837)
+..+.-|.+-+++.|-+=|-. ..+..+=.+++++|.+. +.|.++|.=+-+.-+.+-.. +.
T Consensus 33 d~~~~~i~~~~f~llVVDps~---------------~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~Ywd 93 (300)
T COG2342 33 DAYINEILNSPFDLLVVDPSY---------------CGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRFYWD 93 (300)
T ss_pred cchHHHHhcCCCcEEEEeccc---------------cCCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhhHhh
Confidence 467888888888888665532 12223334688888764 45677776665544432210 01
Q ss_pred ccCCCCCCCCccccCCCCCcccC-CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcc
Q 003230 420 LNMFDGTDGHYFHSGSRGYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYS 498 (837)
Q Consensus 420 ~~~fdg~~~~yf~~~~~g~~~~w-~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~ 498 (837)
.....+ .+.+.-. ..+.| |.-...|-.|+-+..+.+-+...++ -|+||.-+|.|....|-. ...
T Consensus 94 ~~w~~~-~p~wLg~----edP~W~Gny~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y~Y~~---------~~~ 158 (300)
T COG2342 94 KYWLTG-RPDWLGE----EDPEWPGNYAVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAYWYVE---------WND 158 (300)
T ss_pred hhhhcC-CcccccC----CCCCCCCCceeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechHHHHH---------Hhc
Confidence 111111 1122211 12234 2345677889999999999999888 799999999986542210 001
Q ss_pred cccCcccChhHHHHHHHHHHHhhccCCCeEEEE
Q 003230 499 EYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 531 (837)
Q Consensus 499 ~~~g~~~d~~~~~fl~~~~~~v~~~~P~~~~ia 531 (837)
..-+.+....-+.|+..+.+.++..+|.+.+|-
T Consensus 159 ~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~ 191 (300)
T COG2342 159 RETGVNAAKKMVKFIAAIAEYARAANPLFRVIP 191 (300)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 111222233445789999999999999966663
No 142
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=69.89 E-value=12 Score=34.36 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=42.1
Q ss_pred cccCCcEEeCCcEEEEEeCCC--cCeEEEEeecCC--CCCCccccccCC----CceEEEEeCCCCCCCCCCCCCCEEEEE
Q 003230 193 YEKFGFIRSDTGITYREWAPG--AKSASLIGDFNN--WNPNADIMTQNE----FGVWEIFLPNNADGSPPIPHGSRVKIH 264 (837)
Q Consensus 193 y~~lG~~~~~~gv~FrvWAP~--A~~V~LvgDFN~--w~~~~~~m~~~~----~GvW~~~ip~~~~g~~~~~~g~~yk~~ 264 (837)
+.++|+ +.+++|++++. +++|.|+..-.. +.....+|.+.. ...|++.|+... | -..|.|.
T Consensus 10 ~~p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~------~~~Y~F~ 78 (116)
T cd02857 10 AYPYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPT-G------RLRYYFE 78 (116)
T ss_pred eEEcCC----CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCC-c------EEEEEEE
Confidence 347887 56899999875 578888753222 233456887532 357999998542 2 2478888
Q ss_pred EeCC
Q 003230 265 MDTP 268 (837)
Q Consensus 265 v~~~ 268 (837)
+...
T Consensus 79 l~~~ 82 (116)
T cd02857 79 LVDD 82 (116)
T ss_pred EEcC
Confidence 8653
No 143
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=69.35 E-value=15 Score=33.50 Aligned_cols=57 Identities=23% Similarity=0.412 Sum_probs=39.6
Q ss_pred EEEEEeCCCc--CeEEEEee---cCCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003230 205 ITYREWAPGA--KSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 205 v~FrvWAP~A--~~V~LvgD---FN~w~~~-~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~ 267 (837)
++|++-+|.. +.+.|+|+ ..+|++. +.+|...+...|++.+.-.. +. ...|||.+..
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~~-----~veYKY~i~~ 64 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-SV-----YIEYKYFVSN 64 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-CC-----cEEEEEEEEe
Confidence 5666655544 78999997 5689864 46898778889988775322 21 3588888753
No 144
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=69.13 E-value=47 Score=36.15 Aligned_cols=65 Identities=20% Similarity=0.141 Sum_probs=39.9
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003230 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGY-HVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 334 Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY-~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
-++.... .-+|+-+++|+..|.+---++. |++ ...|+..+.+. .++++||+=|+++|++|+|=+.
T Consensus 29 ~~t~~~k-~yIDfAa~~G~eYvlvD~GW~~-----~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 29 ATTETQK-RYIDFAAEMGIEYVLVDAGWYG-----WEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp SSHHHHH-HHHHHHHHTT-SEEEEBTTCCG-----S--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEE
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEecccccc-----ccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEe
Confidence 3666666 6899999999999987222211 111 23444444443 7899999999999999998643
No 145
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=67.50 E-value=10 Score=46.68 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCC----CCCCCccccccCCCCCCCCHHHHH
Q 003230 331 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY----ASFGYHVTNFFAPSSRCGTPDDLK 390 (837)
Q Consensus 331 ~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~----~s~GY~v~~y~a~~~~~Gt~edfk 390 (837)
-++|+|..+. +.++.+++.|.+.|||+||.....+ .|..|.+.+=|+.+|-|=+++.|.
T Consensus 77 ~GIGDfgdL~-~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 77 VGAGDFGDLE-ALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred CCcccHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 5789999977 7999999999999999999875422 234789999999998888877664
No 146
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=65.21 E-value=12 Score=43.09 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=33.0
Q ss_pred cCC-CCCCCCC-----CHHHHHHHHHHHHHHHHHcCCCeEEEcccccc
Q 003230 441 MWD-SRLFNYG-----SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 482 (837)
Q Consensus 441 ~w~-~~~ln~~-----~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 482 (837)
.|| ...|.|+ +|.++++|.+..+.-.+ -++|||+|.+++.
T Consensus 359 vWGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST 404 (423)
T PF14701_consen 359 VWGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHST 404 (423)
T ss_pred ecCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCC
Confidence 464 3678886 68999999999988888 7999999998764
No 147
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=64.81 E-value=10 Score=41.80 Aligned_cols=48 Identities=21% Similarity=0.465 Sum_probs=29.1
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
.-+++||+||+|+|-+--|-.. - +-+++ .+.+.+.||.||+|+---+.
T Consensus 57 rDi~~l~~LgiNtIRVY~vdp~-------------------~-nHd~C---M~~~~~aGIYvi~Dl~~p~~ 104 (314)
T PF03198_consen 57 RDIPLLKELGINTIRVYSVDPS-------------------K-NHDEC---MSAFADAGIYVILDLNTPNG 104 (314)
T ss_dssp HHHHHHHHHT-SEEEES---TT-------------------S---HHH---HHHHHHTT-EEEEES-BTTB
T ss_pred HhHHHHHHcCCCEEEEEEeCCC-------------------C-CHHHH---HHHHHhCCCEEEEecCCCCc
Confidence 4689999999999986555422 1 12444 44566799999999875533
No 148
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=64.22 E-value=22 Score=31.66 Aligned_cols=60 Identities=18% Similarity=0.385 Sum_probs=39.3
Q ss_pred EEEEEeC--CCcCeEEEEeec---CCCCC-CccccccCC-CceEEEEeCCCC-CCCCCCCCCCEEEEEEeCCC
Q 003230 205 ITYREWA--PGAKSASLIGDF---NNWNP-NADIMTQNE-FGVWEIFLPNNA-DGSPPIPHGSRVKIHMDTPS 269 (837)
Q Consensus 205 v~FrvWA--P~A~~V~LvgDF---N~w~~-~~~~m~~~~-~GvW~~~ip~~~-~g~~~~~~g~~yk~~v~~~~ 269 (837)
++|++-+ .--+.+.|+|+. .+|++ .+.+|...+ .+.|++.++-.. .+. -..|||.+...+
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~-----~~~yKy~~~~~~ 69 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQ-----VIEYKYVIVDDD 69 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCC-----eEEEEEEEECCC
Confidence 4566554 334689999876 47986 456898777 899998876432 111 247888876543
No 149
>PLN03059 beta-galactosidase; Provisional
Probab=63.68 E-value=9.4 Score=47.38 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=39.8
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 407 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDv 407 (837)
++|..+|++|+|+|..-=. |.++--. .=.-.|.+..||.++++.|++.||.|||=.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~--------Wn~HEp~--~G~~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVF--------WNGHEPS--PGNYYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHcCCCeEEEEec--------ccccCCC--CCeeeccchHHHHHHHHHHHHcCCEEEecC
Confidence 6899999999999974322 3222111 001134568999999999999999999963
No 150
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=63.51 E-value=8.3 Score=43.05 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=70.8
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCC------CC----CCCCHHHHHHHHHHHHHcCCEEE
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAP------SS----RCGTPDDLKSLIDKAHELGLLVL 404 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~------~~----~~Gt~edfk~LV~~aH~~GI~VI 404 (837)
+...|. +.|+.+..+++|.++|=---. .+|.+....|=.+ .+ .+=|.+|+++||+-|+++||.||
T Consensus 16 ~~~~ik-~~id~ma~~k~N~lhlhl~D~----~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 16 SVDTIK-RLIDQMAYYKLNVLHLHLSDD----QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp -HHHHH-HHHHHHHHTT-SEEEEEEESS----TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHH-HHHHHHHHcCCcEEEEEEecC----CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCcee
Confidence 445566 689999999999998732111 1122222111110 01 13378999999999999999999
Q ss_pred Eeec-cccccCCCc--ccccCC-CCCCCCccccCCCCCcccCCC--CCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003230 405 MDIV-HSHASNNVL--DGLNMF-DGTDGHYFHSGSRGYHWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 405 lDvV-~NH~s~~~~--~~~~~f-dg~~~~yf~~~~~g~~~~w~~--~~ln~~~~eV~~~l~~~l~~Wl~e~g 470 (837)
-.|- +.|+..--. ..+... ...+..+.. ...+.. ..||..+|++.+++.+.+.-.++-+.
T Consensus 91 Peid~PGH~~~~l~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 91 PEIDTPGHAEAWLKAYPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp EEEEESSS-HHHHHHHHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred eeccCchHHHHHHHhCchhhcccccccccccc------ccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 8885 788854210 000000 000001110 111111 36999999999999999999999766
No 151
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=63.32 E-value=91 Score=31.67 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 003230 385 TPDDLKSLIDKAHEL--GLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 462 (837)
Q Consensus 385 t~edfk~LV~~aH~~--GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l 462 (837)
..+.....+.++|++ |++|++=+--.. + ...+ --..++..|+.+++++
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~~-------------~--~~~~---------------~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGWT-------------D--SSPF---------------TLASDPASRAAFANSL 96 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCCC-------------C--CCCc---------------hhhcCHHHHHHHHHHH
Confidence 345667777888887 999998652100 0 0000 1235677888899999
Q ss_pred HHHHHHcCCCeEEEcc
Q 003230 463 RWWLEEYKFDGFRFDG 478 (837)
Q Consensus 463 ~~Wl~e~gvDGfR~D~ 478 (837)
.-+++++++||+=+|-
T Consensus 97 ~~~v~~~~~DGidiD~ 112 (210)
T cd00598 97 VSFLKTYGFDGVDIDW 112 (210)
T ss_pred HHHHHHcCCCceEEee
Confidence 9999999999999995
No 152
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=63.08 E-value=12 Score=43.07 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=39.0
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccC-CCCCCC---CHHHHHHHHHHHHHcCCEEEEeec
Q 003230 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA-PSSRCG---TPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a-~~~~~G---t~edfk~LV~~aH~~GI~VIlDvV 408 (837)
+++.+.++|+.|+|+|-|. + ||....... .+|.+= ...=+.+.|+.|-++||+|++|+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiP-i---------~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIP-I---------GYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEcc-c---------chhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 3478999999999999853 2 222210000 333333 233566779999999999999974
No 153
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=60.25 E-value=14 Score=41.71 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=37.9
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEc-CcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIM-AVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~Lm-Pi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
++.... +.|...+++|++.|+.. -+-|. ..=-..+.|++|++.||+.||.||+||-+.
T Consensus 12 ~~~~~~-~yi~~a~~~Gf~~iFTSL~ipe~-----------------~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENK-AYIEKAAKYGFKRIFTSLHIPED-----------------DPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHH-HHHHHHHCTTEEEEEEEE--------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHH-HHHHHHHHCCCCEEECCCCcCCC-----------------CHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 555555 57777889999999743 11110 001126899999999999999999999764
No 154
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=60.08 E-value=17 Score=44.79 Aligned_cols=64 Identities=6% Similarity=0.060 Sum_probs=51.8
Q ss_pred CCCCCCHHhhHhhhhhHHHHcCCCEEEEcCcccC---CCCCCCCCccccccCCCCCCCCHHHHHHHHH
Q 003230 330 EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLID 394 (837)
Q Consensus 330 ~~~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~---~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~ 394 (837)
+-++|+|..+. +.++.+++.|.+.|+|+|+... ..+.+..|.+.+=|+.+|-|=+++.+-++..
T Consensus 158 ~~GIGDfgdl~-~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~~ 224 (695)
T PRK11052 158 NWGIGDFGDLK-QMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQQ 224 (695)
T ss_pred CCCeecHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhhh
Confidence 45789999977 6999999999999999999842 1224567999999999999988887776643
No 155
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=57.67 E-value=19 Score=39.95 Aligned_cols=94 Identities=21% Similarity=0.271 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003230 391 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 391 ~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~g 470 (837)
..|++||++|++|+==+.+.+-.... +-...+.+ ...+ .-.+-+.|++. ++.||
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~-~~~~ll~~--------~~~g-------------~~~~A~kLi~i----a~~yG 99 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAE-WCEELLEK--------DEDG-------------SFPYADKLIEI----AKYYG 99 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HH-HHHHHT-----------TTS---------------HHHHHHHHH----HHHHT
T ss_pred hhHHHHHhcCceEEEEEEecCCchHH-HHHHHHcC--------Cccc-------------ccHHHHHHHHH----HHHcC
Confidence 47899999999998766662221100 00000111 1111 11233444444 45589
Q ss_pred CCeEEEcccccccccccCccccccCCcccccCc-ccChhHHHHHHHHHHHhhccCCCeEEE
Q 003230 471 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF-ATDVDAVVYLMLVNDMIHGLYPEAVSI 530 (837)
Q Consensus 471 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~-~~d~~~~~fl~~~~~~v~~~~P~~~~i 530 (837)
+||+=+--=..+. . .....-+.|++.+++.+++ .|+..++
T Consensus 100 FDGw~iN~E~~~~-------------------~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 100 FDGWLINIETPLS-------------------GPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp --EEEEEEEESST-------------------TGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred CCceEEEecccCC-------------------chhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 9998765322210 0 1123345899999999999 8776554
No 156
>TIGR03356 BGL beta-galactosidase.
Probab=55.05 E-value=31 Score=40.06 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=63.7
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 332 ~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.+..|.-.. +-|..||+||+|++-+.=-+.. ... -|-. . ..-...+-++++|++|.++||.+|+++.+
T Consensus 49 a~d~y~~y~-eDi~l~~~~G~~~~R~si~Wsr-i~p-~g~~-----~--~n~~~~~~y~~~i~~l~~~gi~pivtL~H-- 116 (427)
T TIGR03356 49 ACDHYHRYE-EDVALMKELGVDAYRFSIAWPR-IFP-EGTG-----P--VNPKGLDFYDRLVDELLEAGIEPFVTLYH-- 116 (427)
T ss_pred cccHHHhHH-HHHHHHHHcCCCeEEcccchhh-ccc-CCCC-----C--cCHHHHHHHHHHHHHHHHcCCeeEEeecc--
Confidence 344566665 6899999999999875321111 000 0100 0 11123577899999999999999999874
Q ss_pred ccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003230 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~g 470 (837)
.. .|.++... . -+.++++.+.+.+.++.-+++||
T Consensus 117 fd-------------~P~~l~~~-g-----------Gw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 117 WD-------------LPQALEDR-G-----------GWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred CC-------------ccHHHHhc-C-----------CCCChHHHHHHHHHHHHHHHHhC
Confidence 21 12222211 1 24567888888888888888776
No 157
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=54.14 E-value=30 Score=31.22 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=37.3
Q ss_pred CCcEEEEEcCc----EEEEEECCCCCcccceEEccc----CCc-cEEEEEeCCCCCcCCccccCCCcceeccccccCCCC
Q 003230 740 GDRVIVFERGN----LVFVFNFHWNSSYSDYRVGCL----KPG-KYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQP 810 (837)
Q Consensus 740 ~~~Vlaf~R~~----llvv~Nf~~~~~~~~~~l~~~----~~g-~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~ 810 (837)
+++.+||.|+. +|+|++...+.+...|.+.++ .+| .+.+||+..... -+..
T Consensus 5 d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~t--------------------v~~~ 64 (91)
T PF09260_consen 5 DDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYT--------------------VDSN 64 (91)
T ss_dssp ETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE----------------------TT
T ss_pred CCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEE--------------------ECCC
Confidence 36799999976 888886664424556777665 223 466666532111 1233
Q ss_pred eEEEEEEcCceEEEEEEc
Q 003230 811 HSFLVYAPSRTAVVYALA 828 (837)
Q Consensus 811 ~~l~l~Lp~~s~~Vl~~~ 828 (837)
+.+.+.+-.+.=.||.+.
T Consensus 65 G~l~v~m~~G~P~Vl~P~ 82 (91)
T PF09260_consen 65 GTLTVPMSNGEPRVLYPA 82 (91)
T ss_dssp S-EEEEESTT--EEEEEC
T ss_pred CEEEEEEcCCceEEEEEH
Confidence 457788888877888775
No 158
>PTZ00445 p36-lilke protein; Provisional
Probab=53.31 E-value=29 Score=36.27 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=41.9
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEE----cCcccCCCCCCCCCccccccCCCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQI----MAVQEHSYYASFGYHVTNFFAPSSRCGT--PDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~L----mPi~e~~~~~s~GY~v~~y~a~~~~~Gt--~edfk~LV~~aH~~GI~VIl 405 (837)
+..+.++...+.|+++||.+|-+ +=|--| +-||+--+ +-+.++++ ..+|+.|+.++.++||+|++
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~H----sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKH----SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhh----cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 34455556778899999999963 111112 23444332 22344443 45599999999999999975
No 159
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=52.47 E-value=18 Score=33.90 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=29.2
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
.+.++.+.++|+.+||+.|= .+-+++++.|+++||+||-
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g--------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG--------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT--------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEcc--------------------------hHHHHHHHHHHHcCCEEEe
Confidence 36899999999999998873 4456889999999999984
No 160
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=52.12 E-value=53 Score=29.40 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=38.1
Q ss_pred EEEEEeCCCc---CeEEEEeec---CCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003230 205 ITYREWAPGA---KSASLIGDF---NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 205 v~FrvWAP~A---~~V~LvgDF---N~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~ 267 (837)
++|++-+|+. +.++|+|+- .+|+. +.+|...+.+.|++.+.-. .+. ...|||.+..
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~~~~~~~W~~~v~lp-~~~-----~ieYky~~~~ 64 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQYVKDGFWSASVSLP-VDT-----HVEWKFVLVE 64 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCcCCCCCCEEEEEEec-CCC-----cEEEEEEEEc
Confidence 6788877743 456788763 57986 6899877889998776432 222 3578887643
No 161
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=51.48 E-value=63 Score=36.26 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecc
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
.+.||+|++++|+.|-++++-+.|
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL~H 102 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQLWH 102 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHHHHHHhcCccceeeccc
Confidence 789999999999999999998764
No 162
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=50.82 E-value=28 Score=37.13 Aligned_cols=48 Identities=33% Similarity=0.470 Sum_probs=35.2
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
++.|.++|+|||++|+++- |.-. + +.++..++|+.+.++|++|+-.+=
T Consensus 87 ~~yl~~~k~lGf~~IEiSd----------Gti~-----l-----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISD----------GTID-----L-----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHCT-SEEEE------------SSS-------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEecC----------Ccee-----C-----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 4689999999999999752 1111 1 268899999999999999998754
No 163
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=50.69 E-value=2.6e+02 Score=31.87 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
.+.||+|++++|++|-++++-+. |.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~--H~ 106 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLT--AG 106 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcc--Cc
Confidence 57899999999999999997764 64
No 164
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=49.11 E-value=46 Score=36.83 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhcc
Q 003230 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 523 (837)
Q Consensus 450 ~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~ 523 (837)
.+++.|+.+++++.-|++++++||+-+|--. .. . .+ .....-..|+++++..+++.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~-~~------------~----~~-~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEY-PG------------A----RG-DDRENYTALLKELREALDKE 142 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcC-CC------------C----Cc-cHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999421 10 0 00 01122347899999988764
No 165
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=49.03 E-value=78 Score=34.03 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 003230 384 GTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNAR 463 (837)
Q Consensus 384 Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~ 463 (837)
+...++.+=|.+|++.|++|||=+ . |.. .+ . |. .. -.+++-|+.+++++.
T Consensus 56 ~~~~~~~~~i~~~~~~g~KVllSi--G--------G~~--~~---~-fs-------------~~-a~~~~~r~~f~~s~~ 105 (256)
T cd06546 56 PRFTTLWTELAILQSSGVKVMGML--G--------GAA--PG---S-FS-------------RL-DDDDEDFERYYGQLR 105 (256)
T ss_pred chhhHHHHHHHHHHhCCCEEEEEE--C--------CCC--CC---C-cc-------------cc-cCCHHHHHHHHHHHH
Confidence 333456666778899999999843 1 000 00 0 10 01 134555666677888
Q ss_pred HHHHHcCCCeEEEcc
Q 003230 464 WWLEEYKFDGFRFDG 478 (837)
Q Consensus 464 ~Wl~e~gvDGfR~D~ 478 (837)
-++++|++||+=||-
T Consensus 106 ~~~~~~~~DGiDiDw 120 (256)
T cd06546 106 DMIRRRGLDGLDLDV 120 (256)
T ss_pred HHHHHhCCCceEEee
Confidence 888889999999984
No 166
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=48.81 E-value=42 Score=37.77 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHHhhccCCCeE
Q 003230 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAV 528 (837)
Q Consensus 450 ~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~~~~~v~~~~P~~~ 528 (837)
.++..|+.+++++.-|++++++||+-+|--. . +.. .+...+.+ -..|++++++.+++..++.+
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~-p------------~~~---~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEY-P------------GQR---GGPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeec-c------------ccC---CCCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 4578889999999999999999999998421 0 000 01111222 34788999999987644443
No 167
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=47.42 E-value=1.3e+02 Score=32.99 Aligned_cols=132 Identities=20% Similarity=0.282 Sum_probs=78.5
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCC-CCCCCCCccccccCCCCCCCC---HHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFAPSSRCGT---PDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~LmPi~e~~-~~~s~GY~v~~y~a~~~~~Gt---~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
++..++++..||+-|+|++- .+.. .++.--|.-.|- +....++ ..|.+.+|++|.++||.+|.-+|.=--
T Consensus 76 kk~~de~fk~ikdn~~Na~V----iD~Kdd~G~lty~s~d~--~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD 149 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFV----IDVKDDYGELTYPSSDE--INKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKD 149 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEE----EEecCCCccEeccccch--hhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeee
Confidence 34456799999999999984 3332 223334554442 2222333 467888999999999999999885211
Q ss_pred cCCC---cccccCCC-CCCCCccccC-----CCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccccc
Q 003230 413 SNNV---LDGLNMFD-GTDGHYFHSG-----SRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 481 (837)
Q Consensus 413 s~~~---~~~~~~fd-g~~~~yf~~~-----~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 481 (837)
..-. ..-+.-+. |.+..-|..+ ..+.|| .+--++.+++|=+.+++--++ ||+|-..||-+..
T Consensus 150 ~~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehW------Vd~y~~~~WeYNvtIAKEa~~-fGfdEiQFDYIRF 220 (400)
T COG1306 150 TILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHW------VDAYDKNLWEYNVTIAKEAAK-FGFDEIQFDYIRF 220 (400)
T ss_pred eeEEeecCceEEEEcCCCcchhhhcccccccccceee------ecccchhhhhhhHHHHHHHHH-cCccceeeeEEEc
Confidence 1000 00000111 1111111111 112332 355578999999999998888 9999999997643
No 168
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=47.38 E-value=2.3e+02 Score=32.15 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 78 i~~~~~lad~vH~~Ga~i~~QL~--H~Gr~ 105 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQLW--HTGRI 105 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEecc--CCCCC
Confidence 68899999999999999999654 66554
No 169
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=47.17 E-value=48 Score=36.77 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 003230 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 450 ~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
.+++.|+.+++++.-|++++++||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46888999999999999999999999984
No 170
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=45.21 E-value=46 Score=29.61 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=22.9
Q ss_pred CcCeEEEEeecCCCCCC-ccccccCC----CceEEEEeC
Q 003230 213 GAKSASLIGDFNNWNPN-ADIMTQNE----FGVWEIFLP 246 (837)
Q Consensus 213 ~A~~V~LvgDFN~w~~~-~~~m~~~~----~GvW~~~ip 246 (837)
+|.+|.|.+.||+|... ...|.+.. .|.|+++|.
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~ 55 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVD 55 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEE
Confidence 58899999999999754 46677654 799999993
No 171
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=44.93 E-value=57 Score=35.94 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccCh-hHHHHHHHHHHHhhccC----C
Q 003230 451 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDMIHGLY----P 525 (837)
Q Consensus 451 ~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~~~~fl~~~~~~v~~~~----P 525 (837)
++.-|+.+++++.-|+++|++||+=||-=..... +...+. .-..|+++++..+++.. .
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~-----------------~~~~~~~~~~~~l~~L~~~l~~~~~~~~~ 158 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSS-----------------GDPQDKDNYTAFLKELRKALKRANRSGKG 158 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTST-----------------SSTTHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeecccc-----------------ccchhhhhhhhhhhhhhhhhcccccccce
Confidence 4677899999999999999999999985321100 001122 22478999998888752 3
Q ss_pred CeEEEE
Q 003230 526 EAVSIG 531 (837)
Q Consensus 526 ~~~~ia 531 (837)
-.+.++
T Consensus 159 ~~ls~a 164 (343)
T PF00704_consen 159 YILSVA 164 (343)
T ss_dssp SEEEEE
T ss_pred eEEeec
Confidence 455555
No 172
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.61 E-value=2.4e+02 Score=31.46 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.||+|++++|++|-++++-+- |.+..
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~--h~G~~ 108 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLN--HPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcc--CCCcC
Confidence 78999999999999999998865 55554
No 173
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=44.49 E-value=33 Score=41.23 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=42.4
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+++|...|++|+|+|+--=.+-- |--.+- .-.|...-||.++|+.||+.|+-|||=+=+-
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn~-----Hep~~g-----~y~FsG~~DlvkFikl~~~~GLyv~LRiGPy 111 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWNL-----HEPSPG-----KYDFSGRYDLVKFIKLIHKAGLYVILRIGPY 111 (649)
T ss_pred HHHHHHHHhcCCceeeeeeeccc-----ccCCCC-----cccccchhHHHHHHHHHHHCCeEEEecCCCe
Confidence 46899999999999985332210 000011 1146778899999999999999999987643
No 174
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=43.01 E-value=3.8e+02 Score=29.90 Aligned_cols=68 Identities=18% Similarity=0.111 Sum_probs=40.1
Q ss_pred hhhhhHHHH---cCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 341 DDVLPRIKR---LGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 341 ~~~LdyLk~---LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
++.+.|.++ =|+..|..-.+.-++....+.+++.-+ +. .-.+.||+|++++|+.|-++++-+. |.+..
T Consensus 33 ~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~---~d--~~~~~~~~l~~~vh~~G~~~~~QL~--H~G~~ 103 (336)
T cd02932 33 DWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLW---ND--EQIEALKRIVDFIHSQGAKIGIQLA--HAGRK 103 (336)
T ss_pred HHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeec---CH--HHHHHHHHHHHHHHhcCCcEEEEcc--CCCcC
Confidence 345555554 467777555544444321122222111 01 1378999999999999999998876 45443
No 175
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=42.99 E-value=73 Score=29.03 Aligned_cols=60 Identities=20% Similarity=0.493 Sum_probs=39.2
Q ss_pred EEEEEeCCCc--CeEEEEeec---CCCCCC-ccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003230 205 ITYREWAPGA--KSASLIGDF---NNWNPN-ADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 205 v~FrvWAP~A--~~V~LvgDF---N~w~~~-~~~m~~~----~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~ 270 (837)
++|++=+++. +.|.|+|+- .+|++. +.+|... +.++|++.+.-.. +. ...|||.+...++
T Consensus 9 V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~-~~-----~veYKy~~~~~~~ 78 (106)
T cd05811 9 VTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPA-GT-----SFEYKFIRKESDG 78 (106)
T ss_pred EEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCC-CC-----cEEEEEEEEcCCC
Confidence 6777754443 678999874 579874 5688643 3589998886432 22 3578888755443
No 176
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=42.65 E-value=3.9e+02 Score=30.37 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~ 109 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAH 109 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCC
Confidence 78999999999999999999876 66553
No 177
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.13 E-value=42 Score=35.99 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=35.6
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
+.++.++++||+.|+|.+...+. ...+.++ +.++++++.+.+.+.||.|..
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~-----~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDE-----RLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCccc-----ccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 68999999999999995321110 0111111 467899999999999999863
No 178
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.98 E-value=3.2e+02 Score=30.80 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCH---HHHHHHHHHH
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSW---EVLRFLLSNA 462 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~---eV~~~l~~~l 462 (837)
.+.+|+|++++|++|-++++-+ +|.+........ .+.. . +....-..........--.... ++.+.+..++
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~--~~~~-~-~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQI--FHAGRMANPALV--PGGD-V-VSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEe--cCCCCCCCcccc--CCCc-e-ecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 7899999999999999998665 555543211100 0100 0 0000000000000000011122 3444444555
Q ss_pred HHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccC
Q 003230 463 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 524 (837)
Q Consensus 463 ~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~ 524 (837)
+.-. +.|+||.-+-+++..+-..+-- ..+...-++|.| . -.....|+.++-+.|++.-
T Consensus 151 ~~a~-~aGfDgVeih~ahGyLl~qFls-p~~N~R~D~yGG-s-lenR~r~~~eii~~vr~~v 208 (353)
T cd04735 151 RRAI-EAGFDGVEIHGANGYLIQQFFS-PHSNRRTDEWGG-S-LENRMRFPLAVVKAVQEVI 208 (353)
T ss_pred HHHH-HcCCCEEEEccccchHHHHhcC-CccCCCCcccCC-c-HHHHHHHHHHHHHHHHHHh
Confidence 5544 4899999999875432221111 011111233333 3 2344567777777777654
No 179
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=41.63 E-value=60 Score=35.65 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccCh-hHHHHHHHHHHHhhcc
Q 003230 449 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDMIHGL 523 (837)
Q Consensus 449 ~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~~~~fl~~~~~~v~~~ 523 (837)
..++..|+.+++++..+++++++||+-+|--. +. ..+. .-..|++++++.+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~~--------------------~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE-LP--------------------ADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-CC--------------------hhHHHHHHHHHHHHHHHhhhc
Confidence 35788899999999999999999999999631 10 0121 2247899999999875
No 180
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=41.07 E-value=50 Score=36.54 Aligned_cols=59 Identities=10% Similarity=0.172 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccCh-hHHHHHHHHHHHhhccC
Q 003230 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDMIHGLY 524 (837)
Q Consensus 450 ~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~~~~fl~~~~~~v~~~~ 524 (837)
.+++.|+.+++++.-+++++|+||+-+|.=.... ..+...+. .-..|++++++.+++..
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~----------------~~~~~~d~~~~~~~l~el~~~l~~~~ 147 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLA----------------AYGVPDKRKELIQLVIHLGETLHSAN 147 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhc----------------ccCCHHHHHHHHHHHHHHHHHHhhcC
Confidence 4688899999999999999999999998311100 00001121 22478899999988653
No 181
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=40.66 E-value=71 Score=33.41 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=42.6
Q ss_pred hhHhhhhhHHHHcCCCEEEEcCcccCCCCC--C--CCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003230 338 NFRDDVLPRIKRLGYNAVQIMAVQEHSYYA--S--FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 338 ~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~--s--~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
.+. +....|+++|+..|+|+|.+...... . .-|...+.-. =+.++++++.+.+.++|+.|++
T Consensus 146 ~i~-~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~-----~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 146 NMQ-QALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPA-----PSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHH-HHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCCCC-----cCHHHHHHHHHHHHHcCCeEEe
Confidence 444 57788899999999999987643211 0 1233333222 2578999999999999999975
No 182
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=40.42 E-value=1.8e+02 Score=34.25 Aligned_cols=104 Identities=12% Similarity=0.256 Sum_probs=63.1
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 332 ~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.+..|.-.. +-+..+++||+|+.-+.=-+..-. . -|.. -. ..-...+=.++||++|+++||.+|+.+.|
T Consensus 66 A~D~Yhry~-eDi~l~~~lG~~~yR~si~WsRi~-P-~g~~----~~--~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H-- 134 (474)
T PRK09852 66 AIDFYHRYK-EDIALMAEMGFKVFRTSIAWSRLF-P-QGDE----LT--PNQQGIAFYRSVFEECKKYGIEPLVTLCH-- 134 (474)
T ss_pred cCchhhhhH-HHHHHHHHcCCCeEEeeceeeeee-e-CCCC----CC--CCHHHHHHHHHHHHHHHHcCCEEEEEeeC--
Confidence 445676666 689999999999987543221100 0 0100 00 11123667889999999999999998763
Q ss_pred ccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003230 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~g 470 (837)
..- |.++..... -|.|+++.+.+.+-++..+++||
T Consensus 135 ~~~-------------P~~l~~~~G-----------GW~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 135 FDV-------------PMHLVTEYG-----------SWRNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred CCC-------------CHHHHHhcC-----------CCCCHHHHHHHHHHHHHHHHHhc
Confidence 311 222221000 23467788888888777777665
No 183
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=40.34 E-value=84 Score=34.51 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHHhhc
Q 003230 450 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHG 522 (837)
Q Consensus 450 ~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~-~~fl~~~~~~v~~ 522 (837)
.++..|+.+++++.-+++++++||+-+|=- |. +...+.+. ..|++++++.++.
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE-----------------~P---~~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWE-----------------FP---SSQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeeccc-----------------CC---CChhHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999831 00 11122222 4688999998874
No 184
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=40.09 E-value=3.3e+02 Score=30.59 Aligned_cols=28 Identities=14% Similarity=0.449 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.|++|++++|+.|-++++-+ +|.+..
T Consensus 76 i~~~~~l~~~vh~~g~~~~~Ql--~H~G~~ 103 (343)
T cd04734 76 IPGFRRLAEAVHAHGAVIMIQL--THLGRR 103 (343)
T ss_pred HHHHHHHHHHHHhcCCeEEEec--cCCCcC
Confidence 6789999999999999999865 555543
No 185
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=38.90 E-value=44 Score=37.03 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=43.1
Q ss_pred hhhhhHHHHcCCC-EEEEcCcccCCCCCCCCCccccc-cCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 341 DDVLPRIKRLGYN-AVQIMAVQEHSYYASFGYHVTNF-FAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 341 ~~~LdyLk~LGvt-~I~LmPi~e~~~~~s~GY~v~~y-~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
++.|..+++.|++ .|.|-. . +.. ..-. ..++-.+ |.+++.+.++.+|++||.|.+++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~-E-S~~-------d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL-E-TAN-------DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec-C-cCC-------HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4789999999998 576532 2 111 1111 1344444 89999999999999999999999875
No 186
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.57 E-value=1.5e+02 Score=32.62 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCC---HHHHHHHHHHH
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGS---WEVLRFLLSNA 462 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~---~eV~~~l~~~l 462 (837)
.+.+|+|++++|+.|-++++-+ +|.+....... .+..+ +.............+ --... .++.+.+.+++
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~~---~~~~~--~~~s~~~~~~~~~~~-~~mt~~ei~~~i~~~~~aA 147 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPNL---TGGPP--PAPSAIPSPGGGEPP-REMTKEEIEQIIEDFAAAA 147 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCcC---CCCCc--cCCCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHH
Confidence 7899999999999999998765 56655431111 11000 000000000000000 01111 23444555666
Q ss_pred HHHHHHcCCCeEEEcccc
Q 003230 463 RWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 463 ~~Wl~e~gvDGfR~D~v~ 480 (837)
+...+ .|+||+-+.++.
T Consensus 148 ~~a~~-aGfDgveih~~~ 164 (327)
T cd02803 148 RRAKE-AGFDGVEIHGAH 164 (327)
T ss_pred HHHHH-cCCCEEEEcchh
Confidence 66666 899999999874
No 187
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.16 E-value=3.4e+02 Score=30.81 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHH---HHHHHHHHH
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLSNA 462 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~e---V~~~l~~~l 462 (837)
.+.||+|++++|++|=++++-+. |.+.........+.+.. ....... ....+..+ --....+ +.+-+..++
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL~--H~Gr~~~~~~~~~~~~~--~~~ps~~-~~~~~~~p-~~mt~~eI~~ii~~f~~AA 150 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQLW--HVGAMRKLGTPPFPDVP--PLSPSGL-VGPGKPVG-REMTEADIDDVIAAFARAA 150 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCCcCcccCccCCCc--eeCCCCC-CcCCCCCC-ccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999998875 55443211000011110 0000000 00000000 0112222 333333445
Q ss_pred HHHHHHcCCCeEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHHhhccC-CCe
Q 003230 463 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY-PEA 527 (837)
Q Consensus 463 ~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~-P~~ 527 (837)
+.-.+ .|+||.-+-++...+-..+= ...+...-.+|.|.- .....|+.++.+.|++.. |++
T Consensus 151 ~~a~~-aGfDgVeih~ahGyLl~qFL-Sp~~N~RtDeYGGsl--enR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 151 ADARR-LGFDGIELHGAHGYLIDQFF-WAGTNRRADGYGGSL--AARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred HHHHH-cCCCEEEEecccchHHHHhc-CCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHcCCCC
Confidence 44444 89999999988743322100 001111123333322 234567888888887754 443
No 188
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=36.85 E-value=31 Score=37.89 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDI 407 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDv 407 (837)
++++++++.+-||++||.|.||-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEeh
Confidence 38999999999999999999994
No 189
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=36.41 E-value=3.9e+02 Score=29.97 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCC
Q 003230 347 IKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGT 426 (837)
Q Consensus 347 Lk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~ 426 (837)
..+=|+..|..-.+.-++....+.+++.- + +. .-...||+|++++|++|-++++-+. |.+.... ..+.
T Consensus 46 rA~gG~GlIi~~~~~v~~~~~~~~~~~~~-~--~d--~~i~~~r~l~d~vh~~G~~i~~QL~--H~G~~~~-----~~~~ 113 (337)
T PRK13523 46 RAAGQVGLVIVEATAVLPEGRISDKDLGI-W--DD--EHIEGLHKLVTFIHDHGAKAAIQLA--HAGRKAE-----LEGD 113 (337)
T ss_pred HHcCCCeEEEECCeEECccccCCCCceec-C--CH--HHHHHHHHHHHHHHhcCCEEEEEcc--CCCCCCC-----CCCC
Confidence 34467888866555444432111111110 0 11 1268999999999999999998875 4444321 1110
Q ss_pred CCCccccCCCCCcccCCCCCCCCCCHHHH---HHHHHHHHHHHHHcCCCeEEEcccccccccccCccccccCCcccccCc
Q 003230 427 DGHYFHSGSRGYHWMWDSRLFNYGSWEVL---RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 503 (837)
Q Consensus 427 ~~~yf~~~~~g~~~~w~~~~ln~~~~eV~---~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~ 503 (837)
. ........ .......-.....++. +-+..+++.-.+ .|+||.-+-+++..+-.. +-...++.-...+|+
T Consensus 114 --~-~~ps~~~~-~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~-aGfDgVeih~ahGyLl~q--FlSp~~N~RtD~yGG 186 (337)
T PRK13523 114 --I-VAPSAIPF-DEKSKTPVEMTKEQIKETVLAFKQAAVRAKE-AGFDVIEIHGAHGYLINE--FLSPLSNKRTDEYGG 186 (337)
T ss_pred --c-cCCCCCCC-CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHHHH--hcCCccCCcCCCCCC
Confidence 0 00000000 0000000012222333 333344544444 899999999885332211 001111122222343
Q ss_pred ccChhHHHHHHHHHHHhhccC
Q 003230 504 ATDVDAVVYLMLVNDMIHGLY 524 (837)
Q Consensus 504 ~~d~~~~~fl~~~~~~v~~~~ 524 (837)
. -.....|+.++.+.|++..
T Consensus 187 s-lenR~Rf~~eii~~ir~~~ 206 (337)
T PRK13523 187 S-PENRYRFLREIIDAVKEVW 206 (337)
T ss_pred C-HHHHHHHHHHHHHHHHHhc
Confidence 3 2234567777777777653
No 190
>PRK01060 endonuclease IV; Provisional
Probab=35.88 E-value=76 Score=34.08 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=36.9
Q ss_pred hHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 003230 339 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 403 (837)
Q Consensus 339 ~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~V 403 (837)
+. +.|+.++++|+++|+|.+--.+ .+. +..-+++++++|.+.+.+.||++
T Consensus 14 ~~-~~l~~~~~~G~d~vEl~~~~p~------~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LE-GAVAEAAEIGANAFMIFTGNPQ------QWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred HH-HHHHHHHHcCCCEEEEECCCCC------CCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 44 6899999999999999653211 111 11237889999999999999985
No 191
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=35.62 E-value=45 Score=37.83 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=46.7
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccccccC
Q 003230 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
.+++|..|+++|+|.|.| +|+.... .+ ...-.|-.+.++..+.++.+++.|+. |-+|++++.-..
T Consensus 107 ~~e~l~~l~~~G~~rvsl-GvQS~~~------~~---L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSL-GMQSAAP------HV---LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCCH------HH---HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 347999999999999975 3332211 01 11123556889999999999999999 999999876443
No 192
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=35.49 E-value=44 Score=38.12 Aligned_cols=54 Identities=26% Similarity=0.458 Sum_probs=38.9
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCC---HHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT---PDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt---~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
+.+..-+++|.+.==|+=+. |+..+|| +++|..|++=|.+++|.||.|-|+.-+
T Consensus 215 ~A~~~A~~~~~kVkGvlitN-----------------PsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~s 271 (471)
T KOG0256|consen 215 AALNQARKLGLKVKGVLITN-----------------PSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGS 271 (471)
T ss_pred HHHHHHHHhCCceeEEEEeC-----------------CCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccc
Confidence 56777778887653332221 2233454 899999999999999999999998654
No 193
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=35.28 E-value=65 Score=38.09 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=45.8
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeecccc
Q 003230 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSH 411 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI-~VIlDvV~NH 411 (837)
.+++|..|++.|++.|.|.+ +.... .+. -.+ .|-.|.++..+.++.|++.|+ .|-+|+.+..
T Consensus 268 t~e~L~~Lk~~Gv~RISIGv-QS~~d------~vL--k~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GL 330 (488)
T PRK08207 268 TEEKLEVLKKYGVDRISINP-QTMND------ETL--KAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGL 330 (488)
T ss_pred CHHHHHHHHhcCCCeEEEcC-CcCCH------HHH--HHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 45799999999999998654 21110 111 223 455789999999999999999 7889999763
No 194
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=34.85 E-value=65 Score=36.34 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=46.2
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccccccC
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
++.|..|+++|++.|.|- |.... ..-+-.+ .|-.+.++..+.|+.|++.|+. |-+|+.++.-..
T Consensus 100 ~e~l~~l~~~Gv~risiG-vqS~~--------~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-VQSFR--------DDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC--------hHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 368999999999999753 33211 1111233 5667899999999999999996 779999875443
No 195
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=33.85 E-value=81 Score=34.23 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=43.7
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
++.+..||+.|++.|.+. +|. . +.-|-.+.+. .+.++..+.++.||++||.|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E~-~-------~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LDT-S-------QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--ccC-C-------HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 468999999999999876 221 1 1111233332 5889999999999999999988877654
No 196
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=33.55 E-value=4e+02 Score=30.28 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeecccccc
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHAS 413 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s 413 (837)
.+.||++++++|+.|=++++-+. |.+
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~--H~G 107 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLW--HAG 107 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEec--cCc
Confidence 67899999999999999998875 555
No 197
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=33.33 E-value=50 Score=38.33 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=45.2
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEE-EeeccccccCC
Q 003230 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL-MDIVHSHASNN 415 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VI-lDvV~NH~s~~ 415 (837)
.++.|..++++|++.|.| .|+.... .-...+ .|--+.++..+.|+.|++.||.+| +|+.++.-..+
T Consensus 140 t~e~l~~l~~~G~~rvsl-GvQS~~~--------~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 140 TAEKLALLAARGVNRLSI-GVQSFHD--------SELHAL-HRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCCH--------HHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 347899999999999975 2332210 011112 222378999999999999999865 99998765544
No 198
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=33.01 E-value=1.3e+02 Score=27.08 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=36.1
Q ss_pred EEEEEeCCCc--CeEEEEee---cCCCCCC-ccccccC---CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003230 205 ITYREWAPGA--KSASLIGD---FNNWNPN-ADIMTQN---EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 268 (837)
Q Consensus 205 v~FrvWAP~A--~~V~LvgD---FN~w~~~-~~~m~~~---~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~ 268 (837)
++|++=+.+. +++.|+|+ +.+|+.. +.+|... +...|++.|.... + ....|||.+...
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~-----~~veYky~v~~~ 68 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-G-----FSSEYNYYVVDD 68 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-C-----CcEEEEEEEEcC
Confidence 4566554443 68888875 3679865 5688532 3348988875432 2 136899988543
No 199
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=32.99 E-value=4.2e+02 Score=29.80 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
-.+.||+|++++|+.|-++++-+. |.+..
T Consensus 75 ~i~~~~~l~~~vh~~g~~~~~QL~--h~G~~ 103 (353)
T cd02930 75 QAAGHRLITDAVHAEGGKIALQIL--HAGRY 103 (353)
T ss_pred HHHHHHHHHHHHHHcCCEEEeecc--CCCCC
Confidence 378999999999999999998876 55543
No 200
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=32.95 E-value=1.8e+02 Score=26.60 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=40.0
Q ss_pred cEEEEEeCC----CcCeEEEEeec---CCCCCCc---c-ccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003230 204 GITYREWAP----GAKSASLIGDF---NNWNPNA---D-IMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 204 gv~FrvWAP----~A~~V~LvgDF---N~w~~~~---~-~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~ 270 (837)
-++|+|=+. --++++|+|+- .+|+... . +|.......|++.++.. .|. -..|||.+...++
T Consensus 4 ~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp-~~~-----~veyK~v~~~~~g 75 (103)
T cd05820 4 PVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVP-AGT-----YIEFKFLKAPADG 75 (103)
T ss_pred cEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcC-CCC-----cEEEEEEEECCCC
Confidence 367887643 23689999864 5898643 2 67666778899888642 222 3578888765444
No 201
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=32.81 E-value=6.8e+02 Score=27.29 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=35.7
Q ss_pred hHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCC--CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 003230 345 PRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS--SRCGTPDDLKSLIDKAHELGLLVLMD 406 (837)
Q Consensus 345 dyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~--~~~Gt~edfk~LV~~aH~~GI~VIlD 406 (837)
.|..+-.|+.|-|-=+..++. -|+-..||-... ..++.-.+|.+-|+.|+++|+||||=
T Consensus 18 ~~C~~~~~dii~i~Fl~~~~~---~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 18 EYCDTGNYDIVNISFLNVFGS---GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred HHhCCCCccEEEEEeEcccCC---CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 344556688887655544443 233333332211 11113468999999999999999995
No 202
>PRK15447 putative protease; Provisional
Probab=32.81 E-value=88 Score=34.50 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=37.4
Q ss_pred CCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003230 334 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 334 Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
|++..| .-.|++.|+++|+|--.. .+.. .+ | +.+++++.|+.||++|.+|.+
T Consensus 15 ~~~~~~----~~~~~~~gaDaVY~g~~~-~~~R-------~~-------f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 15 ETVRDF----YQRAADSPVDIVYLGETV-CSKR-------RE-------L-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCHHHH----HHHHHcCCCCEEEECCcc-CCCc-------cC-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 555544 457889999999987211 1110 01 2 689999999999999999988
No 203
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=32.19 E-value=54 Score=37.03 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=44.9
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccccc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHA 412 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~ 412 (837)
++.|..++++|+|.|.| +|+.... .+.. . -.|-.+.++..+.|+.|++.|+. |-+|+.++.-
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~d------~vL~--~-l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlP 165 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMNN------NILK--Q-LNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLP 165 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCH------HHHH--H-cCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCC
Confidence 47899999999999864 4443211 1111 1 13456799999999999999997 8899998754
No 204
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.66 E-value=90 Score=33.35 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=34.1
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 404 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VI 404 (837)
+.|+.++++||++|+|..-.. ..| .++ .+..++++|.+.+.+.||+|.
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~-----------~~~-~~~---~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRP-----------HAF-APD---LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCc-----------ccc-ccc---cCchHHHHHHHHHHHcCCeEE
Confidence 689999999999999843111 111 111 134678899999999999974
No 205
>PRK07094 biotin synthase; Provisional
Probab=31.41 E-value=64 Score=35.66 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=43.8
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
++.+..|++.|++.|.+ .+- +. +..-|-.+.+ -.+.++..+.++.||+.||.|-.++++.+
T Consensus 129 ~e~l~~Lk~aG~~~v~~-glE-s~-------~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGl 189 (323)
T PRK07094 129 YEEYKAWKEAGADRYLL-RHE-TA-------DKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGL 189 (323)
T ss_pred HHHHHHHHHcCCCEEEe-ccc-cC-------CHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEEC
Confidence 46899999999999873 332 11 1122223334 36789999999999999999988888764
No 206
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=30.70 E-value=55 Score=37.05 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
|.+-|+++.+.||+.||-||-|-|+.|+.-.
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 5788999999999999999999999998543
No 207
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=30.64 E-value=4.3e+02 Score=28.90 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003230 387 DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWL 466 (837)
Q Consensus 387 edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl 466 (837)
+.++++|+.|+++|+.|..-+.....+. +++. .+ -+++++.++-..
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~~--------~~~~-----------------------~~---~~~~~~~~~~~~ 165 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGCP--------YEGE-----------------------VP---PEAVADVAERLF 165 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecCC--------CCCC-----------------------CC---HHHHHHHHHHHH
Confidence 4577888888888888766555421111 1110 00 268888888888
Q ss_pred HHcCCCeEEE-ccc
Q 003230 467 EEYKFDGFRF-DGV 479 (837)
Q Consensus 467 ~e~gvDGfR~-D~v 479 (837)
+ .|+|.+++ |.+
T Consensus 166 ~-~G~d~i~l~DT~ 178 (287)
T PRK05692 166 A-LGCYEISLGDTI 178 (287)
T ss_pred H-cCCcEEEecccc
Confidence 7 89998887 443
No 208
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=30.28 E-value=1.9e+02 Score=23.77 Aligned_cols=56 Identities=16% Similarity=0.056 Sum_probs=32.2
Q ss_pred EEEEEECCCCCcccceEEcccCCcc-EEEEEeCCCCCcCCccccCCCcceeccccccCCCCeEEEEEEcCceEEEEE
Q 003230 751 LVFVFNFHWNSSYSDYRVGCLKPGK-YKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 826 (837)
Q Consensus 751 llvv~Nf~~~~~~~~~~l~~~~~g~-~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~l~l~Lp~~s~~Vl~ 826 (837)
|+|++|-++ ......|+...+|+ |.+++. ... ..+. -+.++...+..||++..|+.
T Consensus 1 L~v~iN~~~--~~k~~~Vgt~~ag~~~~D~tG--------n~~----~~vt------id~dG~~~f~v~~~s~SVWs 57 (57)
T PF09154_consen 1 LAVYINGSA--GWKRMWVGTNWAGKTFYDYTG--------NSS----ETVT------IDEDGWGEFPVPPGSVSVWS 57 (57)
T ss_dssp EEEEEE-SS--SEEEEEEEGGGTTEEEEETTS--------SSS----SEEE------E-TTSEEEEEE-TTEEEEEE
T ss_pred CEEEEeCCC--CeEEEEEccccCCCEEEEccC--------CCC----CeEE------ECCCeEEEEEECCCEEEEeC
Confidence 567779884 44566777666664 555432 211 0111 13456789999999999874
No 209
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=29.72 E-value=1.1e+02 Score=31.77 Aligned_cols=43 Identities=12% Similarity=0.315 Sum_probs=29.8
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 403 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~V 403 (837)
+.-+..|++||.+.|=++|+-- .-..+||+.+.++|-++||.+
T Consensus 138 etAiaml~dmG~~SiKffPm~G--------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPMGG--------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE---TT--------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCcee
Confidence 3678999999999999888741 224789999999999998876
No 210
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=28.78 E-value=92 Score=29.13 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=40.8
Q ss_pred EeCCcEEEEEeCC--CcCeEEEE-eecCCC----CCCcccccc----CCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003230 200 RSDTGITYREWAP--GAKSASLI-GDFNNW----NPNADIMTQ----NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 267 (837)
Q Consensus 200 ~~~~gv~FrvWAP--~A~~V~Lv-gDFN~w----~~~~~~m~~----~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~ 267 (837)
..++-+++|+++. .+++|.|+ +|-.+| .....+|++ .....|+++|+.... ...|.|.|.+
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-------r~~Y~F~l~~ 89 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-------RLRYYFELED 89 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-------EEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-------eEEEEEEEEe
Confidence 3556688898865 57899986 665554 223357765 457899999986422 2578888887
No 211
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=28.34 E-value=84 Score=36.72 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=45.9
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeeccccccC
Q 003230 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSHASN 414 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI-~VIlDvV~NH~s~ 414 (837)
.++.|..|+++|++.|.|- |.... ..-.-.+ .+-.+.++..+.++.+++.|| .|-+|+.++.-..
T Consensus 150 t~e~l~~l~~aG~~risiG-vqS~~--------~~~L~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLG-VQDFD--------PEVQKAV-NRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred CHHHHHHHHHcCCCEEEEC-CCCCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 3479999999999998753 32211 1111122 344689999999999999999 7999998875544
No 212
>PRK06256 biotin synthase; Validated
Probab=28.29 E-value=70 Score=35.61 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=44.0
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.++.+..||+.|++.|.+. .|+ . ..-|-.+.+. .+.++..+.++.||+.||.|-..+++.+
T Consensus 151 ~~e~l~~LkeaG~~~v~~~--lEt-s-------~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHN--LET-S-------RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred CHHHHHHHHHhCCCEEecC--Ccc-C-------HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 3468999999999999763 232 1 1112234333 4789999999999999999988887764
No 213
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=27.88 E-value=95 Score=34.92 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=45.5
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeecccccc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s 413 (837)
+++|..++++|||.|. +.|+.... .-.-.+ .|-.+.++..+.|+.+++.|+. |-+|+.++.-+
T Consensus 98 ~e~l~~l~~~GvnRiS-iGvQS~~~--------~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRIS-FGVQSFNE--------DKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEE-EecccCCH--------HHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 4799999999999997 34443221 111122 4556799999999999999997 66999987543
No 214
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=27.63 E-value=53 Score=37.86 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=31.9
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003230 373 VTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 373 v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
...+-.++...|+..+++++++.||++|+-|++|.+.
T Consensus 165 lvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 165 LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred EEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 3444567788999999999999999999999999884
No 215
>PLN02808 alpha-galactosidase
Probab=27.61 E-value=57 Score=37.27 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=54.4
Q ss_pred HHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCCC
Q 003230 347 IKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGT 426 (837)
Q Consensus 347 Lk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg~ 426 (837)
|+++||+.|.|=--+........|..+.| ..+| |..||.|++.+|++|||.=+=... |+
T Consensus 63 l~~~Gy~yv~iDd~W~~~~rd~~G~~~~d----~~rF--P~G~~~lad~iH~~GlkfGiy~~~---------------G~ 121 (386)
T PLN02808 63 LAALGYKYINLDDCWAELKRDSQGNLVPK----ASTF--PSGIKALADYVHSKGLKLGIYSDA---------------GT 121 (386)
T ss_pred hHHhCCEEEEEcCCcCCCCcCCCCCEeeC----hhhc--CccHHHHHHHHHHCCCceEEEecC---------------Cc
Confidence 79999999987544432211122322222 1244 467999999999999987552211 11
Q ss_pred CCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcccc
Q 003230 427 DGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 480 (837)
Q Consensus 427 ~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v~ 480 (837)
..+- + ..|..+.+...-++.+.+ .|||=+.+|...
T Consensus 122 ~tC~------~------------~~pGs~~~e~~DA~~fA~-WGvDylK~D~C~ 156 (386)
T PLN02808 122 LTCS------K------------TMPGSLGHEEQDAKTFAS-WGIDYLKYDNCE 156 (386)
T ss_pred cccC------C------------CCCcchHHHHHHHHHHHH-hCCCEEeecCcC
Confidence 0010 0 012223455555677776 999999999863
No 216
>PRK15452 putative protease; Provisional
Probab=27.57 E-value=1.2e+02 Score=35.39 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=33.4
Q ss_pred hhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003230 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 343 ~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
.|...-+.|.++|+|-.-. + ++.-...+ | +.++|++.|+.||++|++|.+
T Consensus 15 ~l~aAi~~GADaVY~G~~~-~----~~R~~~~~-------f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPR-Y----SLRVRNNE-------F-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHCCCCEEEECCCc-c----chhhhccC-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 4555668899999983211 1 11111122 2 568999999999999999977
No 217
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=27.34 E-value=83 Score=35.68 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=44.7
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccccccC
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
++.|..++++|+|.|.|- |.... ..-+-.+ .+-.+.++..+.|+.+++.|+. |-+|+.++.-..
T Consensus 100 ~e~l~~l~~~G~~rvsiG-vqS~~--------~~~l~~l-~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLG-VQTFN--------DELLKKI-GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 468999999999998753 33221 1111112 3556789999999999999998 668998775443
No 218
>PLN02692 alpha-galactosidase
Probab=27.22 E-value=58 Score=37.50 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=53.6
Q ss_pred HHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccccCCCcccccCCCC
Q 003230 346 RIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDG 425 (837)
Q Consensus 346 yLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~s~~~~~~~~~fdg 425 (837)
-|+++||+.|.|=--+........|..+.| ..+| |..||.|++.+|++|||.=+=....
T Consensus 86 gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d----~~kF--P~G~k~ladyiH~~GLKfGIy~d~G--------------- 144 (412)
T PLN02692 86 GLSKLGYTYVNIDDCWAEIARDEKGNLVPK----KSTF--PSGIKALADYVHSKGLKLGIYSDAG--------------- 144 (412)
T ss_pred cchhcCcEEEEEcCCcCCCCCCCCCCeeeC----hhhc--CCcHHHHHHHHHHCCCceEEEecCC---------------
Confidence 468899999987544432211122322221 1234 3569999999999999875522111
Q ss_pred CCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEccc
Q 003230 426 TDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 479 (837)
Q Consensus 426 ~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~v 479 (837)
+..+- ...|..+.+...-++.+.+ .|||=+.+|..
T Consensus 145 ~~tC~------------------~~~pGS~g~e~~DA~~fA~-WGvDylK~D~C 179 (412)
T PLN02692 145 YFTCS------------------KTMPGSLGHEEQDAKTFAS-WGIDYLKYDNC 179 (412)
T ss_pred ccccC------------------CCCCCchHHHHHHHHHHHh-cCCCEEecccc
Confidence 00000 0012233444555666766 99999999986
No 219
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.21 E-value=1e+02 Score=33.21 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=35.8
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 404 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VI 404 (837)
+.|+.++++||++|+|.+ -+.. -+..+.+ -+++++++|.+.+-++||+|.
T Consensus 20 e~l~~~~~~G~~~VEl~~-~~~~----~~~~~~~--------~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSV-DETD----DRLSRLD--------WSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHcCCCEEEEec-CCcc----chhhccC--------CCHHHHHHHHHHHHHcCCCce
Confidence 689999999999999942 2111 0111111 157889999999999999985
No 220
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=27.20 E-value=9.2e+02 Score=26.99 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL~--H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQLW--HVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcc--cCccC
Confidence 67899999999999999998755 66554
No 221
>PLN03231 putative alpha-galactosidase; Provisional
Probab=26.89 E-value=9.8e+02 Score=27.20 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=75.4
Q ss_pred HhhHhhhhhHHHHcCCCEEEEcCcccCCCC--------CCCCCc---cccccCCCC-CCCC---HHHHHHHHHHHHHcCC
Q 003230 337 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYY--------ASFGYH---VTNFFAPSS-RCGT---PDDLKSLIDKAHELGL 401 (837)
Q Consensus 337 ~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~--------~s~GY~---v~~y~a~~~-~~Gt---~edfk~LV~~aH~~GI 401 (837)
+..++-.-..||++||+.|-|==-+-.+.. .+.+|. ......+++ ||=+ -.-||.|.+.+|++||
T Consensus 21 ~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GL 100 (357)
T PLN03231 21 LENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGL 100 (357)
T ss_pred HHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCc
Confidence 333432335889999999987543322110 112331 122223331 3311 2369999999999999
Q ss_pred EEEEeeccc-cccCCCcccc--cCCCCCCCCccccCC---CCCcccCCC---CCCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 003230 402 LVLMDIVHS-HASNNVLDGL--NMFDGTDGHYFHSGS---RGYHWMWDS---RLFNYGSWEVLRFLLSNARWWLEEYKFD 472 (837)
Q Consensus 402 ~VIlDvV~N-H~s~~~~~~~--~~fdg~~~~yf~~~~---~g~~~~w~~---~~ln~~~~eV~~~l~~~l~~Wl~e~gvD 472 (837)
|.=+=.-.. +++... ... ..+.|.....+...+ ......|.. .-+|.+++..++|+.+-++.+.+ -|||
T Consensus 101 KfGIY~~~G~~tca~~-~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~-WGVD 178 (357)
T PLN03231 101 KLGIHVMRGISTTAVK-KKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYAS-WGID 178 (357)
T ss_pred ceEEEecCCccchhcc-cCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHHH-hCCC
Confidence 986543332 222110 000 011121111111100 001112222 24688999999999999999998 9999
Q ss_pred eEEEccc
Q 003230 473 GFRFDGV 479 (837)
Q Consensus 473 GfR~D~v 479 (837)
=+.+|..
T Consensus 179 ylK~D~c 185 (357)
T PLN03231 179 FIKHDCV 185 (357)
T ss_pred EEeeccc
Confidence 9999964
No 222
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.84 E-value=85 Score=36.70 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=45.1
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeecccccc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 413 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s 413 (837)
++.|..|+++|+|.|.|-. .... ..-.-.+ .|-.+.++..+.|+.|++.|+. |-+|+.++.-.
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~~--------~~vl~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDFD--------PQVQKAI-NRIQPEEMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCCC--------HHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 4799999999999997542 2111 1111122 4557899999999999999997 88999886543
No 223
>PRK12928 lipoyl synthase; Provisional
Probab=26.79 E-value=1.6e+02 Score=32.42 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=45.9
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 406 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlD 406 (837)
|..++. +.|..|+++|++.|.+.+... |. -..-+=.+|=+|++|..+-+.|.+.|.+-+.-
T Consensus 217 T~ed~~-etl~~Lrel~~d~v~i~~Yl~-p~---------~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~ 277 (290)
T PRK12928 217 TEDEVI-ETLRDLRAVGCDRLTIGQYLR-PS---------LAHLPVQRYWTPEEFEALGQIARELGFSHVRS 277 (290)
T ss_pred CHHHHH-HHHHHHHhcCCCEEEEEcCCC-CC---------ccCCceeeccCHHHHHHHHHHHHHcCCceeEe
Confidence 667777 699999999999998776542 21 11223357889999999999999999875543
No 224
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=26.68 E-value=91 Score=35.30 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=45.2
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccccccC
Q 003230 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
.++.|..++++|++.|.|- |..... .-.-.+ .|-.+.++..+-|+.+++.|+. |-+|+.++.-+.
T Consensus 98 t~e~l~~l~~~G~~rvsiG-vqS~~d--------~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIG-LQAWQN--------SLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred CHHHHHHHHHcCCCEEEEE-CccCCH--------HHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 3478999999999998753 332211 111122 3455799999999999999997 779998874443
No 225
>PRK05660 HemN family oxidoreductase; Provisional
Probab=26.19 E-value=98 Score=35.23 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=45.9
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEE-EeeccccccCC
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL-MDIVHSHASNN 415 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VI-lDvV~NH~s~~ 415 (837)
.++|..|+++|+|.|.|-. ... +..-+-.+ .+..+.++..+-++.|++.|+..| +|+.++.-..+
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-qS~--------~~~~L~~l-~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-QSF--------SEEKLKRL-GRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-CcC--------CHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 3689999999999997532 211 11111222 355689999999999999999864 99998765543
No 226
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=26.03 E-value=6.2e+02 Score=31.32 Aligned_cols=126 Identities=12% Similarity=0.021 Sum_probs=73.1
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHH-HHHHHHHHH-HcCCEEEEeeccccccCCCccc
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD-LKSLIDKAH-ELGLLVLMDIVHSHASNNVLDG 419 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~ed-fk~LV~~aH-~~GI~VIlDvV~NH~s~~~~~~ 419 (837)
..|++|+++|+|+|+|-.+.+..+++. +.-.|=|+.++=-.+| |-+..=.++ +.|++|..-+..--+.-.. .
T Consensus 338 ~l~~ri~~~~~~~VyLqafadp~gdg~----~~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~--~ 411 (672)
T PRK14581 338 KLVQRISDLRVTHVFLQAFSDPKGDGN----IRQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDP--S 411 (672)
T ss_pred HHHHHHHhcCCCEEEEEeeeCCCCCCc----eeeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCc--c
Confidence 689999999999999999987654322 1223334444444455 444534555 5599998766543221100 0
Q ss_pred ccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 003230 420 LNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 478 (837)
Q Consensus 420 ~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~gvDGfR~D~ 478 (837)
+. ....+.... ......-+.+-|.--+|++|+.|.+...-....-.|||+=|.-
T Consensus 412 ~~-----~~~~~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhD 466 (672)
T PRK14581 412 LP-----RITRIDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHD 466 (672)
T ss_pred cc-----hhhhcccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 00 000110000 0000000123566778999999999999999844899987743
No 227
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.98 E-value=45 Score=33.47 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=34.8
Q ss_pred hhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003230 344 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 344 LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
|..++++|++.|+|.+....... . . .++++++.+.+.+.||.|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~--------~---~------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD--------E---K------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT--------H---H------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccc--------c---c------hHHHHHHHHHHHHcCCeEEE
Confidence 45789999999999887644321 0 0 78899999999999999654
No 228
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=25.22 E-value=7.3e+02 Score=31.11 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHc-CCEEEEeeccccccCCC
Q 003230 386 PDDLKSLIDKAHEL-GLLVLMDIVHSHASNNV 416 (837)
Q Consensus 386 ~edfk~LV~~aH~~-GI~VIlDvV~NH~s~~~ 416 (837)
.+.+|++++++|+. |-++++-+ +|.+...
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~ 503 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKG 503 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccc
Confidence 67899999999999 68988876 6666543
No 229
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=25.19 E-value=75 Score=31.44 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=38.6
Q ss_pred CHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Q 003230 335 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 408 (837)
Q Consensus 335 t~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV 408 (837)
+|.-.. +-.+-|+++||..- -.|-+..-||+.+.+++++|+++|++||+=.-
T Consensus 14 D~~~mk-~Aa~~L~~fgi~ye---------------------~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgA 65 (162)
T COG0041 14 DWDTMK-KAAEILEEFGVPYE---------------------VRVVSAHRTPEKMFEYAEEAEERGVKVIIAGA 65 (162)
T ss_pred hHHHHH-HHHHHHHHcCCCeE---------------------EEEEeccCCHHHHHHHHHHHHHCCCeEEEecC
Confidence 444444 56788889998643 12334556999999999999999999998643
No 230
>PRK05967 cystathionine beta-lyase; Provisional
Probab=25.02 E-value=85 Score=36.06 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 379 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 379 ~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
|....++..|++++++.||++|+-||+|-++.
T Consensus 158 PsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 158 PGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 33447899999999999999999999998874
No 231
>PRK05939 hypothetical protein; Provisional
Probab=24.87 E-value=84 Score=36.02 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003230 380 SSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 380 ~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
....|...+++++++.||++|+.||+|-.+
T Consensus 141 ~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 141 ANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 345788899999999999999999999764
No 232
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=24.67 E-value=96 Score=36.23 Aligned_cols=64 Identities=22% Similarity=0.373 Sum_probs=44.3
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccccccC
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 414 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~ 414 (837)
++.|..|+++|++.|.|- |..... .+. -.+ .+-.+.++..+.++.+++.|+. |-+|+.++.-+.
T Consensus 151 ~e~l~~lk~~G~~risiG-vqS~~~------~~l--~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFG-VQDFNK------EVQ--QAV-NRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred HHHHHHHHHcCCCEEEEc-CCCCCH------HHH--HHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 478999999999999753 221110 011 112 2446789999999999999996 779998765443
No 233
>PLN02411 12-oxophytodienoate reductase
Probab=24.64 E-value=1.1e+03 Score=27.01 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccCC
Q 003230 386 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 415 (837)
Q Consensus 386 ~edfk~LV~~aH~~GI~VIlDvV~NH~s~~ 415 (837)
.+.+|+|++++|++|-++++-+. |.+..
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL~--H~Gr~ 113 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQLW--HVGRA 113 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCC
Confidence 68899999999999999998876 55543
No 234
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=24.41 E-value=4.2e+02 Score=31.32 Aligned_cols=104 Identities=11% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 332 ~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.+..|--.. +-|..+|+||+|+--+.=-+..-. . -|.. . . ..=...+=.++||++|.++||..|+.+.|
T Consensus 64 A~D~Yhry~-EDI~Lm~elG~~~yRfSIsWsRI~-P-~G~~--~--~--~N~~gl~~Y~~lid~l~~~GI~P~vTL~H-- 132 (477)
T PRK15014 64 AVDFYGHYK-EDIKLFAEMGFKCFRTSIAWTRIF-P-KGDE--A--Q--PNEEGLKFYDDMFDELLKYNIEPVITLSH-- 132 (477)
T ss_pred ccCcccccH-HHHHHHHHcCCCEEEecccceeec-c-CCCC--C--C--CCHHHHHHHHHHHHHHHHcCCEEEEEeeC--
Confidence 344555555 689999999999976432111100 0 0100 0 0 11123667889999999999999999873
Q ss_pred ccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003230 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~g 470 (837)
..- |.++..... -|.|+++.+.+.+-++..+++||
T Consensus 133 ~dl-------------P~~L~~~yG-----------GW~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 133 FEM-------------PLHLVQQYG-----------SWTNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred CCC-------------CHHHHHhcC-----------CCCChHHHHHHHHHHHHHHHHhc
Confidence 211 222221000 24567888888888877777765
No 235
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=24.31 E-value=75 Score=36.51 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=46.1
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeccccccCC
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASNN 415 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~-VIlDvV~NH~s~~ 415 (837)
+++|..|+++|+|.|.|- |+.... .- ...-.|--+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 115 ~e~l~~l~~~GvnrislG-vQS~~d--------~~-L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLG-VQAFQD--------EL-LALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEE-cccCCH--------HH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 468999999999999753 332211 11 11113455889999999999999999 7799998865543
No 236
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=24.28 E-value=69 Score=30.48 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 003230 381 SRCGTPDDLKSLIDKAHELGLLVLMD 406 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlD 406 (837)
.++.+..|++.+-....++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 57778999999999999999999998
No 237
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=24.21 E-value=2e+02 Score=30.44 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 383 CGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 383 ~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
+-|++++.+|++++-.-++++++|+-+-+
T Consensus 155 ~~~~~~~~~ll~~v~~~~v~l~~D~~h~~ 183 (258)
T PRK09997 155 LTGTRQALKLIDDVGCCNLKIQYDIYHMQ 183 (258)
T ss_pred cCCHHHHHHHHHHhCCCCEEEEeEHHHhh
Confidence 45788888888888777788888875433
No 238
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=23.66 E-value=71 Score=36.24 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
+..|+..+++++++.||++|+.||+|-++.
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 457888999999999999999999998754
No 239
>PRK09028 cystathionine beta-lyase; Provisional
Probab=23.66 E-value=92 Score=35.74 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 383 CGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 383 ~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
.|...+++++++.||++|+-||+|-++.
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4788999999999999999999997764
No 240
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=23.46 E-value=89 Score=33.94 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=37.1
Q ss_pred hhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 343 ~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
.+..+..-.+..|.+.+ ..++. |+ +=+.+++++|++.||++|+.||+|-++...
T Consensus 124 ~~~~~~~~~~~~v~i~~-~~~~t----G~-----------~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 124 LLEAAKTPKTKLLYLNN-PNNPT----GA-----------VLSEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred HHHhhcCccceEEEEEC-CCCCC----Cc-----------ccCHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 33444455677887766 22221 21 225789999999999999999999987543
No 241
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=23.21 E-value=1.4e+02 Score=29.69 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=35.9
Q ss_pred hhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003230 343 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 343 ~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
..--|+.||..+..+. .++..++...-..+.+.++++.+++.|+.|++|.+.
T Consensus 42 ~a~~l~~LG~~~~~~~---------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 93 (196)
T cd00287 42 VAVALARLGVSVTLVG---------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGP 93 (196)
T ss_pred HHHHHHHCCCcEEEEE---------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 4445788999877655 222333322111478999999999999999999874
No 242
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=23.18 E-value=3.1e+02 Score=24.36 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=35.3
Q ss_pred EEEEEeCC--CcCeEEEEeec---CCCCCCccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003230 205 ITYREWAP--GAKSASLIGDF---NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 270 (837)
Q Consensus 205 v~FrvWAP--~A~~V~LvgDF---N~w~~~~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~~~ 270 (837)
++|++=.. --+.++|+|+- .+|+. +.+|.-. .+.|++.+.-. .+. ...|||.+...++
T Consensus 4 v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~-~~~l~~~-~~~W~~~~~l~-~~~-----~ieyKy~~~~~~~ 66 (92)
T cd05818 4 LQVRLDHQVKFGEHVAILGSTKELGSWKK-KVPMNWT-ENGWVCDLELD-GGE-----LVEYKFVIVKRDG 66 (92)
T ss_pred EEEEEEEEcCCCCEEEEEeChHHHCCCCC-CCccccC-CCCEEEEEEeC-CCC-----cEEEEEEEEcCCC
Confidence 44554322 34688999874 68984 4577654 46798877532 122 3588988765443
No 243
>PLN02229 alpha-galactosidase
Probab=22.57 E-value=85 Score=36.38 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=34.1
Q ss_pred hHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCC-CCCCHHHHHHHHHHHHHcCCEEEE
Q 003230 345 PRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 345 dyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~-~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
.-|+++||+.|.|=--+........|.. .+++ +| |.-+|.|++.+|++|||.=+
T Consensus 92 ~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l-----~~d~~rF--P~G~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 92 TGLADLGYIHVNIDDCWSNLKRDSKGQL-----VPDPKTF--PSGIKLLADYVHSKGLKLGI 146 (427)
T ss_pred hHHHhCCCEEEEEcCCcCCCCcCCCCCE-----EEChhhc--CCcHHHHHHHHHHCCCceEE
Confidence 3479999999976544322211122322 2222 44 34699999999999998755
No 244
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=22.42 E-value=96 Score=37.01 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=44.2
Q ss_pred HhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 340 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 340 ~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
.++.|..|+++|+|.|+|-. +.... .+. -.+ .|--|.++..+-++.+++.|++|.+|+.++
T Consensus 205 ~~e~L~~L~~~G~~rVslGV-QS~~d------~VL--~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM~G 265 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGV-QTIYN------DIL--ERT-KRGHTVRDVVEATRLLRDAGLKVVYHIMPG 265 (522)
T ss_pred CHHHHHHHHHcCCCEEEEEC-ccCCH------HHH--HHh-CCCCCHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 34799999999999998642 22110 111 112 344578999999999999999999999876
No 245
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=22.30 E-value=96 Score=36.24 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=45.4
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcC-CEEEEeeccccccC
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG-LLVLMDIVHSHASN 414 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~G-I~VIlDvV~NH~s~ 414 (837)
+++|..++++|||.|.| .|+.... .+ ...-.|--+.++..+.|+.+++.| +.|.+|++++.-+.
T Consensus 163 ~e~l~~l~~aGvnRiSi-GVQSf~d------~v---Lk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 163 DEKADAALDAGANRFSI-GVQSFNT------QV---RRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHHcCCCEEEe-cCCcCCH------HH---HHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 47999999999999953 4443211 00 011134447899999999999999 88999999875544
No 246
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.85 E-value=1.1e+02 Score=34.96 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
...|...+++++++.||++|+.||+|-++.
T Consensus 146 Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 146 SITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 345889999999999999999999998764
No 247
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=21.73 E-value=69 Score=35.76 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccc
Q 003230 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 410 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~N 410 (837)
...|+..+++++++.||++|+.||+|-++.
T Consensus 150 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 150 GNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 345778899999999999999999998864
No 248
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=21.48 E-value=62 Score=35.20 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecc
Q 003230 383 CGTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 383 ~Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
+|...+++++++.||++|+.||+|-++
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 466678999999999999999999875
No 249
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.43 E-value=2.1e+02 Score=26.49 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=40.1
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
.....+..+|++++.+.+...... ..--....|..-+=+.=|...+..++++.||++|++||.
T Consensus 17 ~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 17 KIAATLSSTGTPAFFLHPTEALHG-DLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHHhhcCCCceEEcccchhhcc-ccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 344556778999987755321111 001122333333346678889999999999999999885
No 250
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=21.41 E-value=4e+02 Score=31.39 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeec-cccccC
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDIV-HSHASN 414 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV-~NH~s~ 414 (837)
|++|.+++|+-|.-|||+||-.+- +.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 699999999999999999998885 799976
No 251
>PRK07324 transaminase; Validated
Probab=21.39 E-value=1.4e+02 Score=33.68 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeccccc
Q 003230 385 TPDDLKSLIDKAHELGLLVLMDIVHSHA 412 (837)
Q Consensus 385 t~edfk~LV~~aH~~GI~VIlDvV~NH~ 412 (837)
+.++++++++.|+++|+.||.|-++.+.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 6899999999999999999999987654
No 252
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=21.31 E-value=6.7e+02 Score=29.61 Aligned_cols=104 Identities=13% Similarity=0.274 Sum_probs=61.6
Q ss_pred CCCCHHhhHhhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 332 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 332 ~~Gt~~~~~~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.+..|.-.. +-+..+|+||+|+--+.=-+.--. . -|... .+ .=...+=..+||++|+++||..|+-+. |
T Consensus 68 a~d~Yhry~-eDi~Lm~~lG~~aYRfSIsWsRI~-P-~G~~~----~~--N~~gl~~Y~~lId~L~~~GI~P~VTL~--H 136 (478)
T PRK09593 68 AIDMYHHYK-EDIALFAEMGFKTYRMSIAWTRIF-P-KGDEL----EP--NEAGLQFYEDIFKECHKYGIEPLVTIT--H 136 (478)
T ss_pred ccchHHhhH-HHHHHHHHcCCCEEEEecchhhcc-c-CCCCC----CC--CHHHHHHHHHHHHHHHHcCCEEEEEec--c
Confidence 445676666 689999999999976542221100 0 01100 00 112256678999999999999998876 3
Q ss_pred ccCCCcccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 003230 412 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 470 (837)
Q Consensus 412 ~s~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~eV~~~l~~~l~~Wl~e~g 470 (837)
.. -|.++..... -|.|+++.+.+.+-++.-+++||
T Consensus 137 ~d-------------lP~~L~~~~G-----------GW~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 137 FD-------------CPMHLIEEYG-----------GWRNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred cC-------------CCHHHHhhcC-----------CCCChHHHHHHHHHHHHHHHHhc
Confidence 31 1223321101 23467777777777777776664
No 253
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.14 E-value=2.5e+02 Score=31.64 Aligned_cols=50 Identities=8% Similarity=0.218 Sum_probs=37.5
Q ss_pred hhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003230 342 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 405 (837)
Q Consensus 342 ~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIl 405 (837)
+....|+.+++ +|.|+|..+.+. .+|. . =+.++++++.+.+.++||.|.+
T Consensus 275 ~La~~l~~l~~-~VnLIPynp~~~---~~~~-----~-----ps~e~i~~f~~~L~~~Gi~vtv 324 (345)
T PRK14457 275 ELANLLRGFQS-HVNLIPYNPIDE---VEFQ-----R-----PSPKRIQAFQRVLEQRGVAVSV 324 (345)
T ss_pred HHHHHHhcCCC-eEEEecCCCCCC---CCCC-----C-----CCHHHHHHHHHHHHHCCCeEEE
Confidence 56678888876 899999876543 2332 1 2478999999999999999974
No 254
>PLN02389 biotin synthase
Probab=20.74 E-value=2.1e+02 Score=32.77 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=43.3
Q ss_pred hhhhhHHHHcCCCEEEEcCcccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 341 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 341 ~~~LdyLk~LGvt~I~LmPi~e~~~~~s~GY~v~~y~a~~~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
++.+..||+.|++.+.+ .++.. ..-|-.+.+. .+.++-.+.++.||+.||+|-.=+++.|
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeTs--------~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDTS--------REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecCC--------hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 36899999999999865 23321 1112223221 2789999999999999999988888876
No 255
>PRK07050 cystathionine beta-lyase; Provisional
Probab=20.70 E-value=1.1e+02 Score=34.88 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 383 CGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 383 ~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
.|...+++++++.||++|+.||+|-.++.
T Consensus 163 ~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 163 TMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 47899999999999999999999988654
No 256
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=20.34 E-value=2.1e+02 Score=25.83 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=32.3
Q ss_pred CeEEEEeec---CCCCCC-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003230 215 KSASLIGDF---NNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 268 (837)
Q Consensus 215 ~~V~LvgDF---N~w~~~-~~~m~~~~~GvW~~~ip~~~~g~~~~~~g~~yk~~v~~~ 268 (837)
+.|+|+|+- .+|++. +.+|.......|++.|.-. .+. ...|||.+...
T Consensus 16 e~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp-~~~-----~veyKyv~~~~ 67 (97)
T cd05810 16 QSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLP-AST-----NVEWKCLKRNE 67 (97)
T ss_pred CeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcC-CCC-----eEEEEEEEEcC
Confidence 578999874 489864 4678777778999888632 222 35788866543
No 257
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=20.24 E-value=83 Score=34.56 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeecc
Q 003230 384 GTPDDLKSLIDKAHELGLLVLMDIVH 409 (837)
Q Consensus 384 Gt~edfk~LV~~aH~~GI~VIlDvV~ 409 (837)
|...+++++++.||++|+.||+|-++
T Consensus 146 G~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 146 GDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CCccCHHHHHHHHHHcCCEEEEEccc
Confidence 44566899999999999999999995
No 258
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=20.12 E-value=88 Score=35.18 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeecccc
Q 003230 381 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 411 (837)
Q Consensus 381 ~~~Gt~edfk~LV~~aH~~GI~VIlDvV~NH 411 (837)
..+|+..+++++++-||+.|+.||+|-.+..
T Consensus 157 ~~~G~~~~l~~i~~la~~~~~~livDea~~~ 187 (370)
T TIGR02539 157 GEYGNLPDAGKVAKVCREKGVPLLLNCAYTV 187 (370)
T ss_pred CCCccccCHHHHHHHHHHcCCeEEEECcccc
Confidence 4458889999999999999999999987653
Done!