BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003231
(837 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/232 (51%), Positives = 167/232 (71%), Gaps = 4/232 (1%)
Query: 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAK 577
N V F DI + K++LQE+V+LP RP+LF G L P RG+LLFGPPG GKTMLAK
Sbjct: 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTG-LRAPARGLLLFGPPGNGKTMLAK 166
Query: 578 AIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV 637
A+A E+ A+F N+S +++TSK+ GE EK VRALF +A ++ P+IIF+D+VDS+L +R R
Sbjct: 167 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCER-RE 225
Query: 638 GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAE 697
GEH+A R++K EF+ +DG+ + +R+LV+ ATNRP +LDEA++RRF +R+ V LP+ E
Sbjct: 226 GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEE 285
Query: 698 NREMILKTLLAKE--KVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
R ++LK LL K+ + + +LA MT+GYSGSDL L AA P+REL
Sbjct: 286 TRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 161/229 (70%), Gaps = 5/229 (2%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V + DI + K++LQE+V+LP RP+LF G L P +G+LLFGPPG GKT+LA+A+A
Sbjct: 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTG-LRAPAKGLLLFGPPGNGKTLLARAVAT 76
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHE 641
E A+F+N+S +++TSK+ G+ EK VRALF +A + P+IIF+DEVDS+L EHE
Sbjct: 77 ECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLL-SERSSSEHE 135
Query: 642 AMRKIKNEFMTHWDGLLTR-NGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENRE 700
A R++K EF+ +DGL +G+RI+VLAATNRP +LDEA +RRF +R+ V LP + RE
Sbjct: 136 ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRE 195
Query: 701 MILKTLLAKE--KVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
++L LL K+ ++ + LA +T+GYSGSDL L AA P+REL
Sbjct: 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 157/228 (68%), Gaps = 4/228 (1%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V + DI + K +++E+V+ P+ RPD+F G L P +GILLFGPPGTGKT++ K IA+
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG-LRGPPKGILLFGPPGTGKTLIGKCIAS 139
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHE 641
++GA+F ++S S++TSKW GE EK VRALF +A P +IF+DE+DS+L QR GEHE
Sbjct: 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHE 198
Query: 642 AMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREM 701
+ R+IK EF+ DG T + +RILV+ ATNRP ++DEA RR +R+ + LP A R+
Sbjct: 199 SSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 258
Query: 702 ILKTLLAKEK--VEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
I+ L++KE+ + + + +++ ++ +SG+D+ LC A+ P+R L
Sbjct: 259 IVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 150/233 (64%), Gaps = 15/233 (6%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V + D+ L KE+L+E V+LP++ P LFKG KP GILL+GPPGTGK+ LAKA+A
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVAT 106
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHE 641
EA ++F +VS S + SKW GE EK V+ LF +A + P+IIF+D+VD++ G R GE E
Sbjct: 107 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESE 165
Query: 642 AMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREM 701
A R+IK E + +G + + + +LVL ATN P+ LD AI RRFERRI + LP R
Sbjct: 166 ASRRIKTELLVQMNG-VGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 224
Query: 702 ILK-------TLLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
+ + ++L KE D++ L AMTEGYSGSD+ + A +P+R++
Sbjct: 225 MFEINVGDTPSVLTKE-----DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 199 bits (507), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 15/233 (6%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V + D+ L KE+L+E V+LP++ P LFKG KP GILL+GPPGTGK+ LAKA+A
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVAT 82
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHE 641
EA ++F +VS S + SKW GE EK V+ LF +A + P+IIF+DEVD++ G R GE E
Sbjct: 83 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE-GESE 141
Query: 642 AMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREM 701
A R+IK E + +G + + + +LVL ATN P+ LD AI RRFERRI + LP R
Sbjct: 142 ASRRIKTELLVQMNG-VGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 200
Query: 702 ILK-------TLLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
+ + +L KE D++ L AMTEGYSGSD+ + A +P+R++
Sbjct: 201 MFEINVGDTPCVLTKE-----DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 248
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 199 bits (505), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 149/233 (63%), Gaps = 15/233 (6%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V + D+ L KE+L+E V+LP++ P LFKG KP GILL+GPPGTGK+ LAKA+A
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVAT 73
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHE 641
EA ++F +VS S + SKW GE EK V+ LF +A + P+IIF+D+VD++ G R GE E
Sbjct: 74 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESE 132
Query: 642 AMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREM 701
A R+IK E + +G + + + +LVL ATN P+ LD AI RRFERRI + LP R
Sbjct: 133 ASRRIKTELLVQMNG-VGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 191
Query: 702 ILK-------TLLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
+ + +L KE D++ L AMTEGYSGSD+ + A +P+R++
Sbjct: 192 MFEINVGDTPCVLTKE-----DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 198 bits (504), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 149/233 (63%), Gaps = 15/233 (6%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V + D+ L KE+L+E V+LP++ P LFKG KP GILL+GPPGTGK+ LAKA+A
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVAT 91
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHE 641
EA ++F +VS S + SKW GE EK V+ LF +A + P+IIF+D+VD++ G R GE E
Sbjct: 92 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESE 150
Query: 642 AMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREM 701
A R+IK E + +G + + + +LVL ATN P+ LD AI RRFERRI + LP R
Sbjct: 151 ASRRIKTELLVQMNG-VGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 209
Query: 702 ILK-------TLLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
+ + +L KE D++ L AMTEGYSGSD+ + A +P+R++
Sbjct: 210 MFEINVGDTPCVLTKE-----DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 257
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 149/229 (65%), Gaps = 6/229 (2%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V ++D+ L KE+L+E V+LP++ P LF G P RGILLFGPPGTGK+ LAKA+A
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR-TPWRGILLFGPPGTGKSYLAKAVAT 189
Query: 582 EAG-ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEH 640
EA ++F ++S S + SKW GE EK V+ LF LA + P+IIF+DE+DS+ G R+ E
Sbjct: 190 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NES 248
Query: 641 EAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENRE 700
EA R+IK EF+ G+ N + ILVL ATN P+ LD AI RRFE+RI + LP A R
Sbjct: 249 EAARRIKTEFLVQMQGVGVDN-DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA 307
Query: 701 MILKTLLA--KEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
+ + L + + + DF+EL T+GYSG+D+ + A +PVR++
Sbjct: 308 AMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 148/229 (64%), Gaps = 6/229 (2%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V ++D+ L KE+L+E V+LP++ P LF G P RGILLFGPPGTGK+ LAKA+A
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR-TPWRGILLFGPPGTGKSYLAKAVAT 67
Query: 582 EAG-ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEH 640
EA ++F ++S S + SKW GE EK V+ LF LA + P+IIF+DE+DS+ G R+ E
Sbjct: 68 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NES 126
Query: 641 EAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENRE 700
EA R+IK EF+ G+ N + ILVL ATN P+ LD AI RRFE+RI + LP R
Sbjct: 127 EAARRIKTEFLVQMQGVGVDN-DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARA 185
Query: 701 MILKTLLA--KEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
+ K L + + + DF+EL T+GYSG+D+ + A +PVR++
Sbjct: 186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 146/232 (62%), Gaps = 8/232 (3%)
Query: 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAK 577
NE+G + DIG + ++E+V LPLR P LFK +KP RGILL+GPPGTGKT++A+
Sbjct: 199 NEVG--YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 578 AIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV 637
A+ANE GA F ++ I SK GE E N+R F A K +P IIF+DE+D++ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 638 GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPS 695
E R+I ++ +T DGL R ++V+AATNRP +D A+ R RF+R + +G+P
Sbjct: 317 -HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
Query: 696 AENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
A R IL+ K+ +D+D +++A T G+ G+DL LC AA + +R+
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 146/232 (62%), Gaps = 8/232 (3%)
Query: 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAK 577
NE+G + DIG + ++E+V LPLR P LFK +KP RGILL+GPPGTGKT++A+
Sbjct: 199 NEVG--YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 578 AIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV 637
A+ANE GA F ++ I SK GE E N+R F A K +P IIF+DE+D++ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 638 GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPS 695
E R+I ++ +T DGL R ++V+AATNRP +D A+ R RF+R + +G+P
Sbjct: 317 -HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
Query: 696 AENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
A R IL+ K+ +D+D +++A T G+ G+DL LC AA + +R+
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 137/224 (61%), Gaps = 7/224 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
VT+ DIG L ++K LQELV P+ PD F + P +G+L +GPPG GKT+LAKAIAN
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR--TRVGE 639
E A+FI++ + + WFGE E NVR +F A + +P ++F DE+DS+ R
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAE 697
A ++ N+ +T DG+ T+ + + ++ ATNRP +D AI+R R ++ I + LP +
Sbjct: 594 GGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 698 NREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAA 740
+R ILK L K V +D+D + LA MT G+SG+DL +C A
Sbjct: 652 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 146/232 (62%), Gaps = 8/232 (3%)
Query: 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAK 577
NE+G + DIG + ++E+V LPLR P LFK +KP RGILL+GPPGTGKT++A+
Sbjct: 199 NEVG--YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 578 AIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV 637
A+ANE GA F ++ I SK GE E N+R F A K +P IIF+DE+D++ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 638 GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPS 695
E R+I ++ +T DGL R ++V+AATNRP +D A+ R RF+R + +G+P
Sbjct: 317 -HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
Query: 696 AENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
A R IL+ K+ +D+D +++A T G+ G+DL LC AA + +R+
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 146/232 (62%), Gaps = 8/232 (3%)
Query: 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAK 577
NE+G + DIG + ++E+V LPLR P LFK +KP RGILL+GPPGTGKT++A+
Sbjct: 199 NEVG--YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 578 AIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV 637
A+ANE GA F ++ I SK GE E N+R F A K +P IIF+DE+D++ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 638 GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPS 695
E R+I ++ +T DGL R ++V+AATNRP +D A+ R RF+R + +G+P
Sbjct: 317 -HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
Query: 696 AENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
A R IL+ K+ +D+D +++A T G+ G+DL LC AA + +R+
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 146/232 (62%), Gaps = 8/232 (3%)
Query: 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAK 577
NE+G + D+G + ++E+V LPLR P LFK +KP RGILL+GPPGTGKT++A+
Sbjct: 199 NEVG--YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 578 AIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV 637
A+ANE GA F ++ I SK GE E N+R F A K +P IIF+DE+D++ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 638 GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPS 695
E R+I ++ +T DGL R ++V+AATNRP +D A+ R RF+R + +G+P
Sbjct: 317 -HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
Query: 696 AENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
A R IL+ K+ +D+D +++A T G+ G+DL LC AA + +R+
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 146/232 (62%), Gaps = 8/232 (3%)
Query: 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAK 577
NE+G + D+G + ++E+V LPLR P LFK +KP RGILL+GPPGTGKT++A+
Sbjct: 199 NEVG--YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 578 AIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV 637
A+ANE GA F ++ I SK GE E N+R F A K +P IIF+DE+D++ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 638 GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPS 695
E R+I ++ +T DGL R ++V+AATNRP +D A+ R RF+R + +G+P
Sbjct: 317 -HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
Query: 696 AENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
A R IL+ K+ +D+D +++A T G+ G+DL LC AA + +R+
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 137/224 (61%), Gaps = 7/224 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
VT+ DIG L ++K LQELV P+ PD F + P +G+L +GPPG GKT+LAKAIAN
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR--TRVGE 639
E A+FI++ + + WFGE E NVR +F A + +P ++F DE+DS+ R
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAE 697
A ++ N+ +T DG+ T+ + + ++ ATNRP +D AI+R R ++ I + LP +
Sbjct: 594 GGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 698 NREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAA 740
+R ILK L K V +D+D + LA MT G+SG+DL +C A
Sbjct: 652 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 137/224 (61%), Gaps = 7/224 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
VT+ DIG L ++K LQELV P+ PD F + P +G+L +GPPG GKT+LAKAIAN
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR--TRVGE 639
E A+FI++ + + WFGE E NVR +F A + +P ++F DE+DS+ R
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAE 697
A ++ N+ +T DG+ T+ + + ++ ATNRP +D AI+R R ++ I + LP +
Sbjct: 132 GGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 189
Query: 698 NREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAA 740
+R ILK L K V +D+D + LA MT G+SG+DL +C A
Sbjct: 190 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 143/232 (61%), Gaps = 9/232 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V + DIG L + + ++E+V LPL+ P+LF+ ++P +GILL+GPPGTGKT+LAKA+A
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV---G 638
E A+FI V S + K+ GE V+ +F LA + +P+IIF+DE+D++ +RT G
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133
Query: 639 EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSA 696
+ E R + + + DG R +I + ATNRP LD AI+R RF+R I V P
Sbjct: 134 DREVQRTLM-QLLAEMDGFDARGDVKI--IGATNRPDILDPAILRPGRFDRIIEVPAPDE 190
Query: 697 ENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
+ R ILK K + ED++ +E+A MTEG G++LK +C A +REL
Sbjct: 191 KGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 162 bits (411), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 140/231 (60%), Gaps = 9/231 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
+TF IG L E L+E++ LPL+ P++F+ +KP +G+LL+GPPGTGKT+LAKA+A
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHE 641
GA+FI S I K+ GE + +R +F A + P IIF+DEVD++ G+R G
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGT-S 296
Query: 642 AMRKIKN---EFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSA 696
A R+I+ E +T DG +I++ ATNRP LD A++R R +R++ + LP+
Sbjct: 297 ADREIQRTLMELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLPNE 354
Query: 697 ENREMILKTLLAK-EKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
R I K AK +K + DF+ M++G++G+D++N A + +R+
Sbjct: 355 AGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 146/234 (62%), Gaps = 13/234 (5%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGTGKTMLAKAIA 580
VT+ADIGAL +I+E L ++ P+R PD FK GL+ P G+LL GPPG GKT+LAKA+A
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVA 65
Query: 581 NEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEH 640
NE+G +FI+V + + + GE E+ VR +F A +P +IF DEVD++ +R+ E
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-RET 124
Query: 641 EAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAEN 698
A ++ N+ +T DGL R +++ ++AATNRP +D AI+R R ++ + VGLP +
Sbjct: 125 GASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182
Query: 699 REMILKTLL---AKEKVE-DLDFKELAA--MTEGYSGSDLKNLCVTAAYRPVRE 746
R ILKT+ K ++ D++ + +A + Y+G+DL L A+ +R+
Sbjct: 183 RLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ 236
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 155 bits (391), Expect = 1e-37, Method: Composition-based stats.
Identities = 96/237 (40%), Positives = 135/237 (56%), Gaps = 8/237 (3%)
Query: 514 VIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKT 573
++ ++I TFAD+ +E KE + ELV LR P F+ K +G+L+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 574 MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 633
+LAKAIA EA F +S S + G VR +F A K +P IIF+DE+D++ Q
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 634 RTR--VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRI 689
R G H+ + N+ + DG E I+V+AATNRP LD A++R RF+R++
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
Query: 690 MVGLPSAENREMILKTLLAKEKVE-DLDFKELAAMTEGYSGSDLKNLCVTAAYRPVR 745
+VGLP RE ILK + + + D+D +A T G+SG+DL NL AA R
Sbjct: 178 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 140/229 (61%), Gaps = 9/229 (3%)
Query: 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582
T++D+G L++ E L E ++LP++R D FK ++ +G L++GPPGTGKT+LA+A A +
Sbjct: 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238
Query: 583 AGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR---TRVGE 639
A+F+ ++ + + GE K VR F LA + +PTIIF+DE+D++ +R + G+
Sbjct: 239 TNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGD 298
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAE 697
E R + E + DG + +R+ VLAATNR LD A++R R +R+I LPS +
Sbjct: 299 REVQRTML-ELLNQLDGF--SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED 355
Query: 698 NREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVR 745
+R IL+ K +D++++ELA T+ ++G+ LK + V A +R
Sbjct: 356 SRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 132/231 (57%), Gaps = 8/231 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
VT+AD+G L+ K+ ++E V LPL + DL++ + P RG+LL+GPPGTGKTML KA+AN
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR--TRVGE 639
A+FI V+ S K+ GE + VR +F LA + +P+IIF+DEVDS+ +R + G
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS 288
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRI-MVGLPSA 696
+++I E +T DG + V+ ATNR LD A++R R +R+I L
Sbjct: 289 DREVQRILIELLTQMDGF--DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDR 346
Query: 697 ENREMILKTLLAKEKVE-DLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
R +I T+ +K + + D L + SG+ + + A R VR+
Sbjct: 347 RERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 8/236 (3%)
Query: 516 PANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTML 575
P+ VTF D+G E E L+E+V L+ P F + +GILL GPPGTGKT+L
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLL 65
Query: 576 AKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRT 635
A+A+A EA F ++S S + G VR LF A +P I+F+DE+D++ R
Sbjct: 66 ARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125
Query: 636 R--VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMV 691
G H+ + N+ + DG ++ G I+V+AATNRP LD A++R RF+++I+V
Sbjct: 126 AGLGGGHDEREQTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKIVV 183
Query: 692 GLPSAENREMILKT-LLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
P R+ IL+ K ED++ + +A T G+ G+DL+NL AA RE
Sbjct: 184 DPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 9/230 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
VT++D+G + E L+E+V LPL P+ F + P +GILL+GPPGTGKT+ A+A+AN
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR---TRVG 638
A+FI V S + K+ GE + VR LF +A IIF DE+D++ G R G
Sbjct: 266 RTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGG 325
Query: 639 EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSA 696
++E R + E +T DG R I V+ ATNRP LD A++R R +R++ LP
Sbjct: 326 DNEVQRTML-ELITQLDGFDPRG--NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDL 382
Query: 697 ENREMILKTLLAKEKVE-DLDFKELAAMTEGYSGSDLKNLCVTAAYRPVR 745
E R I + VE + ++ ++ + +G++L+++C A +R
Sbjct: 383 EGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 130/236 (55%), Gaps = 8/236 (3%)
Query: 516 PANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTML 575
P+ VTF D+G E E L+E+V L+ P F + +GILL GPPGTG T+L
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLL 65
Query: 576 AKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRT 635
A+A+A EA F ++S S + G VR LF A +P I+F+DE+D++ R
Sbjct: 66 ARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125
Query: 636 R--VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMV 691
G H+ + N+ + DG ++ G I+V+AATNRP LD A++R RF+++I+V
Sbjct: 126 AGLGGGHDEREQTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKIVV 183
Query: 692 GLPSAENREMILKT-LLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
P R+ IL+ K ED++ + +A T G+ G+DL+NL AA RE
Sbjct: 184 DPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 134/230 (58%), Gaps = 9/230 (3%)
Query: 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582
+++DIG L + ++E V LPL P+L++ +KP +G++L+G PGTGKT+LAKA+AN+
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239
Query: 583 AGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR---TRVGE 639
A+F+ + S + K+ G+ + R +F +A + +P+I+F+DE+D++ +R GE
Sbjct: 240 TSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGE 299
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAE 697
E R + E + DG R + V+ ATN+ LD A+IR R +R+I+ P
Sbjct: 300 REIQRTML-ELLNQLDGFDDRG--DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 698 NREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
++ IL +K + ED++ + L + SG+D++ +C A +RE
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 137/233 (58%), Gaps = 15/233 (6%)
Query: 523 TFADIGALNEIKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGTGKTMLAKAIAN 581
T+ +G L + + ++E++ LP++ P+LF+ G+ +P +G++L+GPPGTGKT+LA+A+A+
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPPGTGKTLLARAVAH 204
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV---- 637
FI VS + + K+ GE + VR LF +A + +P+IIF+DE+DS+ TRV
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI--GSTRVEGSG 262
Query: 638 -GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLP 694
G+ E R + E + DG T + I ++ ATNR LD A++R R +R+I P
Sbjct: 263 GGDSEVQRTML-ELLNQLDGFET--SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319
Query: 695 SAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
S R IL+ K + ++ +++A G SG+D+K +C A +RE
Sbjct: 320 SVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 132 bits (332), Expect = 8e-31, Method: Composition-based stats.
Identities = 86/232 (37%), Positives = 131/232 (56%), Gaps = 8/232 (3%)
Query: 515 IPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTM 574
I A + V F D+ E KE + E+V L+ P+ + K +G+LL GPPGTGKT+
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 575 LAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR 634
LAKA+A EA F ++ S+ + G VR LF A K +P+IIF+DE+D++ R
Sbjct: 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119
Query: 635 TR---VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRI 689
V ++ + N+ + DG + N ++VLAATNRP LD A++R RF+R++
Sbjct: 120 AAGGVVSGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQV 178
Query: 690 MVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAA 740
+V P R ILK + K+ D++ +E+A +T G +G+DL N+ AA
Sbjct: 179 LVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAA 230
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 130/235 (55%), Gaps = 11/235 (4%)
Query: 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAI 579
+GV+F D+ ++E K ++E V L+ P+ F K +G LL GPPG GKT+LAKA+
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAV 59
Query: 580 ANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR--TRV 637
A EA F+ ++ + G VR+LF A +P I+++DE+D++ +R T
Sbjct: 60 ATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS 119
Query: 638 G-EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLP 694
G + + N+ + DG+ T + ++VLA+TNR LD A++R R +R + + LP
Sbjct: 120 GFSNTEEEQTLNQLLVEMDGMGTTD--HVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177
Query: 695 SAENREMILKTLLAKEKV-EDLDF--KELAAMTEGYSGSDLKNLCVTAAYRPVRE 746
+ + R I + L K+ + F + LA +T G+SG+D+ N+C AA RE
Sbjct: 178 TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 8/215 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
VTF D+ E KE L+E+V L+ P F + +G+LL GPPG GKT LA+A+A
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR--VGE 639
EA FI S S + G VR LF A + +P I+F+DE+D++ +R G
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAE 697
++ + N+ + DG I+V+AATNRP LD A++R RF+R+I + P +
Sbjct: 156 NDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213
Query: 698 NREMILKT-LLAKEKVEDLDFKELAAMTEGYSGSD 731
RE IL+ K ED+D LA T G+ G+D
Sbjct: 214 GREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 8/215 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
VTF D+ E KE L+E+V L+ P F + +G+LL GPPG GKT LA+A+A
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR--VGE 639
EA FI S S + G VR LF A + +P I+F+DE+D++ +R G
Sbjct: 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 146
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAE 697
++ + N+ + DG I+V+AATNRP LD A++R RF+R+I + P +
Sbjct: 147 NDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 204
Query: 698 NREMILKT-LLAKEKVEDLDFKELAAMTEGYSGSD 731
RE IL+ K ED+D LA T G+ G+D
Sbjct: 205 GREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 116 bits (291), Expect = 5e-26, Method: Composition-based stats.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 8/215 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
VTF D+ E KE L+E+V L+ P F + +G+LL GPPG GKT LA+A+A
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR--VGE 639
EA FI S S + G VR LF A + +P I+F+DE+D++ +R G
Sbjct: 72 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAE 697
++ + N+ + DG I+V+AATNRP LD A++R RF+R+I + P +
Sbjct: 132 NDEREQTLNQLLVEMDGF--EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189
Query: 698 NREMILKT-LLAKEKVEDLDFKELAAMTEGYSGSD 731
RE IL+ K ED+D LA T G+ G+D
Sbjct: 190 GREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 116 bits (290), Expect = 6e-26, Method: Composition-based stats.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 8/215 (3%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
VTF D+ E KE L+E+V L+ P F + +G+LL GPPG GKT LA+A+A
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR--VGE 639
EA FI S S + G VR LF A + +P I+F+DE+D++ +R G
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155
Query: 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAE 697
++ + N+ + DG I+V+AATNRP LD A++R RF+R+I + P +
Sbjct: 156 NDEREQTLNQLLVEMDGF--EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213
Query: 698 NREMILKT-LLAKEKVEDLDFKELAAMTEGYSGSD 731
RE IL+ K ED+D LA T G+ G+D
Sbjct: 214 GREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 37/173 (21%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTI 621
++L+GPPGTGKT LA+ IA A A +S T K E + R + TI
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRR---TI 109
Query: 622 IFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHW-DGLLTRNGERILVLAATNRP-FDLDE 679
+FVDEV H + ++ F+ H DG +T + A T P F+L+
Sbjct: 110 LFVDEV------------HRFNKSQQDAFLPHIEDGTIT------FIGATTENPSFELNS 151
Query: 680 AIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSDL 732
A++ R R +LK+ L+ E +E + + + T GY G D+
Sbjct: 152 ALLSR-------------ARVYLLKS-LSTEDIEQVLTQAMEDKTRGYGGQDI 190
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 33/143 (23%)
Query: 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 616
+P +LLFGPPG GKT LA IA+E G + +TS E ++ A+ + +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLE 89
Query: 617 VSPTIIFVDEVDSMLGQRTR--------------VGEHEAMRKIKNEFMTHWDGLLTRNG 662
I+F+DE+ + Q +G+ A R I+ E
Sbjct: 90 EG-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL------------ 136
Query: 663 ERILVLAATNRPFDLDEAIIRRF 685
R ++ AT RP + ++ RF
Sbjct: 137 PRFTLIGATTRPGLITAPLLSRF 159
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 555 LLKPCRG--ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI--TSKWFGEDEKNVRAL 610
L K +G + L GPPG GKT LAK+IA G F+ +S+ + S+ G V A+
Sbjct: 102 LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161
Query: 611 -------FTLAAKVSPTIIFVDEVDSM 630
A K++P + +DE+D M
Sbjct: 162 PGRIIQGMKKAGKLNP-VFLLDEIDKM 187
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 33/143 (23%)
Query: 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 616
+P +LLFGPPG GKT LA IA+E G + +TS E ++ A+ + +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLE 89
Query: 617 VSPTIIFVDEVDSMLGQRTR--------------VGEHEAMRKIKNEFMTHWDGLLTRNG 662
I+F+DE+ + Q +G+ A R I+ E
Sbjct: 90 EG-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL------------ 136
Query: 663 ERILVLAATNRPFDLDEAIIRRF 685
R ++ AT RP + ++ RF
Sbjct: 137 PRFTLIGATTRPGLITAPLLSRF 159
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 33/143 (23%)
Query: 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK 616
+P +LLFGPPG GKT LA IA+E G + +TS E ++ A+ + +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLE 89
Query: 617 VSPTIIFVDEVDSMLGQRTR--------------VGEHEAMRKIKNEFMTHWDGLLTRNG 662
I+F+DE+ + Q +G+ A R I+ E
Sbjct: 90 EG-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL------------ 136
Query: 663 ERILVLAATNRPFDLDEAIIRRF 685
R ++ AT RP + ++ RF
Sbjct: 137 PRFTLIGATTRPGLITAPLLSRF 159
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASF-INVSMSTITSKWFGEDEKNVRALFTLAA----- 615
ILL GP G+GKT++A+ +A I+ + S + + GED +N+ A+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 616 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRK 645
K I+F+DE+D + +R+ E+ ++ +
Sbjct: 135 KAQKGIVFIDEIDKI----SRLSENRSITR 160
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGEDEKNV------RALFT 612
+ IL+ GP G GKT +A+ +A A A FI V + T + G++ ++ A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 613 LAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDG--LLTRNG----ERIL 666
+ A I+F+DE+D + + G + ++ + + +G + T++G + IL
Sbjct: 111 IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 170
Query: 667 VLAA----TNRPFDLDEAIIRRFERRIMVGLPSAENREMIL-----------KTLLAKEK 711
+A+ RP DL + R R+ + SA + E IL K L+A E
Sbjct: 171 FIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 230
Query: 712 V 712
V
Sbjct: 231 V 231
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT-SKWFGEDEKN-VRALFTL----AA 615
ILL GP G+GKT+LA+ +A F +T+T + + GED +N ++ L
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 616 KVSPTIIFVDEVDSM 630
K I+++D++D +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT-SKWFGEDEKN-VRALFTL----AA 615
ILL GP G+GKT+LA+ +A F +T+T + + GED +N ++ L
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 616 KVSPTIIFVDEVDSM 630
K I+++D++D +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAGA 585
R +LL GPPGTGKT LA AIA E G+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGS 89
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAGAS--FINVSMSTITSKWFGEDE---KNVRALFTLA 614
R +LL GPPGTGKT LA AIA E G+ F S + S + E +N R L
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 615 AKVSPTIIFVD 625
K P I D
Sbjct: 138 IKEGPPGIIQD 148
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 563 LLFGPPGTGKTMLAKAIANE----------AGASFINVSMSTI--TSKWFGEDEKNVRAL 610
+L G PG GKT + + +A G +++ M ++ +K+ GE E+ ++A+
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 611 FT-LAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669
+ I+F+DE+ +++G G +A +K GE L+ A
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---------RGELRLIGA 168
Query: 670 AT---NRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVE 713
T R + D A+ RRF+ + V P+ E IL+ L KEK E
Sbjct: 169 TTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGL--KEKYE 212
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 563 LLFGPPGTGKTMLAKAIANE----------AGASFINVSMSTI--TSKWFGEDEKNVRAL 610
+L G PG GKT + + +A G +++ M ++ +K+ GE E+ ++A+
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 611 FT-LAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669
+ I+F+DE+ +++G G +A +K GE L+ A
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---------RGELRLIGA 305
Query: 670 AT---NRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVE 713
T R + D A+ RRF+ + V P+ E IL+ L KEK E
Sbjct: 306 TTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGL--KEKYE 349
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 563 LLFGPPGTGKTMLAKAIANE----------AGASFINVSMSTITS--KWFGEDEKNVRAL 610
+L G PG GKT + + +A G + + M + + K+ GE E+ ++ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 611 FT-LAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMT---HWDGLLTRNGERIL 666
LA + I+F+DE+ +M+G G +A +K H G T + R
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 166
Query: 667 VLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILK 704
+ + D A+ RRF+ ++ V PS E+ IL+
Sbjct: 167 I--------EKDAALERRFQ-KVFVAEPSVEDTIAILR 195
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 544 PLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVS 591
PL P+ +L P ILL G PG GKT L K +A+++G +INV
Sbjct: 2 PLGSPEF----MLLP--NILLTGTPGVGKTTLGKELASKSGLKYINVG 43
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 29/165 (17%)
Query: 563 LLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT------------SKWFGEDEKNVRAL 610
LL G G GKT +A+ +A + M+ T +K+ G+ EK +AL
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 611 FTLAAKVSPTIIFVDEVDSMLGQ-RTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669
+ + +I+F+DE+ +++G G+ +A IK LL+ +I V+
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP--------LLSSG--KIRVIG 320
Query: 670 AT-----NRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK 709
+T + F+ D A+ RRF+ +I + PS E I+ L K
Sbjct: 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPK 364
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 20/166 (12%)
Query: 555 LLKPCRGILLFGPPGTGKTMLA-KAIANEA--GASFINVSMSTITSKWFGEDEKNVRAL- 610
LL RGI+L GPPG+GKTM+ A+ N + IN S T T ++ +
Sbjct: 1263 LLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVT 1322
Query: 611 ----FTLAAK--VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKN--EFMTHWDGLLTR-- 660
TL K + ++F DE++ L + + G + ++ E W +
Sbjct: 1323 TSKGLTLLPKSDIKNLVLFCDEIN--LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWV 1380
Query: 661 NGERILVLAATNRPFDLDE-AIIRRFERR---IMVGLPSAENREMI 702
ERI ++ A N P D + RF R + +G PS ++ I
Sbjct: 1381 TIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQI 1426
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWF-------GEDEKNVRALFT 612
R +L+GPPG GKT A +A E G + + S + SK D +V F
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 613 LAAKVSPT-----IIFVDEVDSML-GQRTRVGE 639
+ +I +DEVD M G R VG+
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQ 170
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 20/166 (12%)
Query: 555 LLKPCRGILLFGPPGTGKTMLA-KAIANEA--GASFINVSMSTITSKWFGEDEKNVRAL- 610
LL RGI+L GPPG+GKTM+ A+ N + IN S T T ++ +
Sbjct: 1044 LLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVT 1103
Query: 611 ----FTLAAK--VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKN--EFMTHWDGLLTR-- 660
TL K + ++F DE++ L + + G + ++ E W +
Sbjct: 1104 TSKGLTLLPKSDIKNLVLFCDEIN--LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWV 1161
Query: 661 NGERILVLAATNRPFDLDE-AIIRRFERR---IMVGLPSAENREMI 702
ERI ++ A N P D + RF R + +G PS ++ I
Sbjct: 1162 TIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQI 1207
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEK--NVRALFTLAA 615
P +LL GPP +GKT LA IA E+ FI + S F E K ++ +F A
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 120
Query: 616 KVSPTIIFVDEVDSML 631
K + + VD+++ +L
Sbjct: 121 KSQLSCVVVDDIERLL 136
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEK--NVRALFTLAA 615
P +LL GPP +GKT LA IA E+ FI + S F E K ++ +F A
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 121
Query: 616 KVSPTIIFVDEVDSML 631
K + + VD+++ +L
Sbjct: 122 KSQLSCVVVDDIERLL 137
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596
+ IL+ GP G GKT +A+ +A A A FI V + T
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 86
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596
+ IL+ GP G GKT +A+ +A A A FI V + T
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 93
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596
+ IL+ GP G GKT +A+ +A A A FI V + T
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 36.2 bits (82), Expect = 0.081, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 716 DFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747
D++ L AMTEGYSGSD+ + A +P+R++
Sbjct: 27 DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 58
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWF 600
+ IL+ GP G GKT +A+ +A A A FI V + T +
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 30/163 (18%)
Query: 562 ILLFGPPGTGKTMLAKAIANEA---------GASFINVSMSTITSKWFGEDEKNVRALFT 612
IL+ G PGT K+ + + I+ A G++ ++ + + K GE AL
Sbjct: 330 ILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL 389
Query: 613 LAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATN 672
++ +DE+D M + RV HEAM + G++ + R V+AA N
Sbjct: 390 ADGGIA----VIDEIDKMRDE-DRVAIHEAME--QQTVSIAKAGIVAKLNARAAVIAAGN 442
Query: 673 ---------RP----FDLDEAIIRRFERR-IMVGLPSAENREM 701
RP +L I+ RF+ I+ P ++RE+
Sbjct: 443 PKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDREL 485
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 562 ILLFGPPGTGKTMLAKAIANEA-GASFINVSMSTITSKWFG--------EDEKNVRALFT 612
+L +GPPGTGKT A+A E G ++ N+ + S G +D + R +F+
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS 108
Query: 613 LAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATN 672
K +I +DE D+M A+R++ + T+N R VLA N
Sbjct: 109 KGFK----LIILDEADAMTN-----AAQNALRRVIERY--------TKN-TRFCVLA--N 148
Query: 673 RPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVE 713
L A++ + R LP E E + +L EK++
Sbjct: 149 YAHKLTPALLSQCTRFRFQPLPQ-EAIERRIANVLVHEKLK 188
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINV 590
ILL G PG GKT L K +A+++G +INV
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 553 GGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEKNVRA 609
G L P I ++G GTGKT L +A NEA G I S +K
Sbjct: 34 GSLYNP---IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTIN 90
Query: 610 LFTLAAKVSPTIIFVDEVDSMLG-QRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVL 668
F K S ++ +D+V + G +RT++ EF ++ L E+ ++L
Sbjct: 91 EFRNMYK-SVDLLLLDDVQFLSGKERTQI-----------EFFHIFNTLYLL--EKQIIL 136
Query: 669 AATNRPFDLD---EAIIRRFERRIMV 691
A+ P LD + ++ RFE I+V
Sbjct: 137 ASDRHPQKLDGVSDRLVSRFEGGILV 162
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 553 GGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEKNVRA 609
G L P I ++G GTGKT L +A NEA G I S +K
Sbjct: 33 GSLYNP---IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTIN 89
Query: 610 LFTLAAKVSPTIIFVDEVDSMLG-QRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVL 668
F K S ++ +D+V + G +RT++ EF ++ L E+ ++L
Sbjct: 90 EFRNMYK-SVDLLLLDDVQFLSGKERTQI-----------EFFHIFNTLYLL--EKQIIL 135
Query: 669 AATNRPFDLD---EAIIRRFERRIMV 691
A+ P LD + ++ RFE I+V
Sbjct: 136 ASDRHPQKLDGVSDRLVSRFEGGILV 161
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 553 GGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEKNVRA 609
G L P I ++G GTGKT L +A NEA G I S +K
Sbjct: 34 GSLYNP---IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHLKKGTIN 90
Query: 610 LFTLAAKVSPTIIFVDEVDSMLG-QRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVL 668
F K S ++ +D+V + G +RT++ EF ++ L E+ ++L
Sbjct: 91 EFRNXYK-SVDLLLLDDVQFLSGKERTQI-----------EFFHIFNTLYLL--EKQIIL 136
Query: 669 AATNRPFDLD---EAIIRRFERRIMV 691
A+ P LD + ++ RFE I+V
Sbjct: 137 ASDRHPQKLDGVSDRLVSRFEGGILV 162
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 32/175 (18%)
Query: 562 ILLFGP-PGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPT 620
I+L P PGTGKT +AKA+ ++ A + V+ S + N + + +
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGR--QK 107
Query: 621 IIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEA 680
+I +DE D R G E+ R +++ FM + + +++ A N +
Sbjct: 108 VIVIDEFD-------RSGLAESQRHLRS-FMEAYSSNCS------IIITANNI-----DG 148
Query: 681 IIRRFERR---IMVGLPSAENREMILKTLLAK-------EKVEDLDFKELAAMTE 725
II+ + R I G P+ E++ ++K ++ + E + D K +AA+ +
Sbjct: 149 IIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVK 203
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596
+ IL GP G GKT +A+ +A A A FI V + T
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 566 GPPGTGKTMLAKAIANEAGASFINV-SMSTITSKW 599
GP GTGK+ +AK +A + GAS+++ +M I + W
Sbjct: 11 GPSGTGKSSVAKELARQLGASYLDTGAMYRIVTLW 45
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTI 621
+LL GPPG GKT LA IA+E + I+V+ + K + ++ A+ T + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-----QGDMAAILTSLER--GDV 105
Query: 622 IFVDEV 627
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTI 621
+LL GPPG GKT LA IA+E + I+V+ + K + ++ A+ T + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-----QGDMAAILTSLER--GDV 105
Query: 622 IFVDEV 627
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTI 621
+LL GPPG GKT LA IA+E + I+V+ + K + ++ A+ T + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-----QGDMAAILTSLER--GDV 105
Query: 622 IFVDEV 627
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTI 621
+LL GPPG GKT LA IA+E + I+V+ + K + ++ A+ T + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-----QGDMAAILTSLER--GDV 105
Query: 622 IFVDEV 627
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTI 621
+LL GPPG GKT LA IA+E + I+V+ + K + ++ A+ T + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-----QGDMAAILTSLER--GDV 105
Query: 622 IFVDEV 627
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 560 RGILLFGPPGTGKTMLAKAIA 580
R +LL G PGTGK+ML +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTI 621
+LL GPPG G+T LA IA+E + I+V+ + K + ++ A+ T + +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN-IHVTSGPVLVK-----QGDMAAILTSLER--GDV 105
Query: 622 IFVDEV 627
+F+DE+
Sbjct: 106 LFIDEI 111
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 23/83 (27%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGA-----SFINVSMSTITSKWFGEDEKN---VRALFTL 613
+L GPPGTGKT A A+A + +FI ++ S DE+ VR
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---------DERGIDVVRHKIKE 91
Query: 614 AAKVSPT------IIFVDEVDSM 630
A+ +P IIF+DE D++
Sbjct: 92 FARTAPIGGAPFKIIFLDEADAL 114
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASF 587
+P R +++ G G+GKT +A +A+E G F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 FSLKMQNKYG-CARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKG 192
F LK+ Y R +R+I E++ ++SG +G+++ +PP E K
Sbjct: 149 FGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPEVEEKA 197
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 FSLKMQNKYG-CARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKG 192
F LK+ Y R +R+I E++ ++SG +G+++ +PP E K
Sbjct: 150 FGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPEVEEKA 198
>pdb|1XOY|A Chain A, Solution Structure Of At3g04780.1, An Arabidopsis Ortholog
Of The C-Terminal Domain Of Human Thioredoxin-Like
Protein
Length = 161
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 317 DVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIA 365
D DE+L I P+N +KL H K EE K ++F NK H+
Sbjct: 55 DADEQLLIYIPFNQVIKL-----HSFAIKGPEEEGPKTVKFFSNKEHMC 98
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 23/83 (27%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGA-----SFINVSMSTITSKWFGEDEKN---VRALFTL 613
+L GPPGTGKT A A+A + +FI ++ S DE+ VR
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---------DERGIDVVRHKIKE 91
Query: 614 AAKVSPT------IIFVDEVDSM 630
A+ +P IIF+DE D++
Sbjct: 92 FARTAPIGGAPFKIIFLDEADAL 114
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 557 KPCRGILLFGPPGTGKTMLAKAIANEAGA---SFINVSMS 593
+P + GP G GKT LA+A+A S I + MS
Sbjct: 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI--------TSKWFGEDEKNVRALFTL 613
+LL G PG+GK+ +A+A+AN G ++ + W + + R + +
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRXIXQI 71
Query: 614 AAKVS 618
AA V+
Sbjct: 72 AADVA 76
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 560 RGILLFGPPGTGKTMLAKAIANEAG--ASFINVSMSTITS 597
R +L+ G PGTGKT +A +A G F ++ S I S
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581
V F D N + ++L+EL+ K + P LL G PG+GKT L AI
Sbjct: 5 VNFTDKQFENRLNDNLEELIQ--------GKKAVESPT-AFLLGGQPGSGKTSLRSAIFE 55
Query: 582 EAGASFINVSMSTITSKWFGEDE 604
E + I + T + DE
Sbjct: 56 ETQGNVIVIDNDTFKQQHPNFDE 78
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 23/83 (27%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGA-----SFINVSMSTITSKWFGEDEKN---VRALFTL 613
+L GPPG GKT A A+A E +F+ ++ S DE+ +R
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS---------DERGINVIREKVKE 99
Query: 614 AAKVSPT------IIFVDEVDSM 630
A+ P IIF+DE D++
Sbjct: 100 FARTKPIGGASFKIIFLDEADAL 122
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTI 621
IL GP G GKT LA I+ E A+ + I E ++ A+ T ++ I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI------EKSGDLAAILTNLSE--GDI 109
Query: 622 IFVDEV 627
+F+DE+
Sbjct: 110 LFIDEI 115
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI 595
++ GPPG GK AK +A E G F+++S I
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDI 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,967,864
Number of Sequences: 62578
Number of extensions: 735086
Number of successful extensions: 2262
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 116
length of query: 837
length of database: 14,973,337
effective HSP length: 107
effective length of query: 730
effective length of database: 8,277,491
effective search space: 6042568430
effective search space used: 6042568430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)