Query 003231
Match_columns 837
No_of_seqs 616 out of 3785
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 19:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1.7E-67 3.7E-72 584.1 39.8 537 62-824 181-790 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 3.4E-61 7.4E-66 542.7 36.8 487 66-807 180-680 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 8.1E-57 1.7E-61 480.3 26.8 381 381-828 4-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 1.4E-55 2.9E-60 533.9 39.2 532 66-823 173-730 (733)
5 KOG0736 Peroxisome assembly fa 100.0 5E-54 1.1E-58 487.4 39.3 494 105-807 427-938 (953)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 2.9E-48 6.2E-53 431.3 21.9 312 520-833 185-525 (802)
7 COG0542 clpA ATP-binding subun 100.0 6.1E-47 1.3E-51 443.0 28.6 427 252-737 247-748 (786)
8 KOG0738 AAA+-type ATPase [Post 100.0 2.2E-46 4.7E-51 399.2 25.9 295 505-824 193-490 (491)
9 KOG0735 AAA+-type ATPase [Post 100.0 4.5E-45 9.8E-50 410.9 35.5 393 252-752 482-894 (952)
10 COG1222 RPT1 ATP-dependent 26S 100.0 6.5E-46 1.4E-50 394.2 21.8 247 519-805 145-396 (406)
11 COG0464 SpoVK ATPases of the A 100.0 4.6E-44 1E-48 416.2 39.1 469 93-806 4-488 (494)
12 KOG0739 AAA+-type ATPase [Post 100.0 4.2E-42 9.1E-47 355.1 18.6 308 514-826 122-439 (439)
13 TIGR02639 ClpA ATP-dependent C 100.0 8.4E-40 1.8E-44 395.4 33.6 388 254-746 261-714 (731)
14 PRK11034 clpA ATP-dependent Cl 100.0 5.8E-40 1.3E-44 392.6 31.7 392 255-746 266-718 (758)
15 CHL00195 ycf46 Ycf46; Provisio 100.0 1.1E-38 2.4E-43 365.5 34.3 411 252-823 67-485 (489)
16 KOG0741 AAA+-type ATPase [Post 100.0 1.2E-39 2.5E-44 357.4 24.1 334 269-704 326-683 (744)
17 TIGR03345 VI_ClpV1 type VI sec 100.0 1.5E-38 3.3E-43 387.0 32.4 441 253-747 265-834 (852)
18 KOG0734 AAA+-type ATPase conta 100.0 7.7E-39 1.7E-43 351.4 18.9 230 514-747 293-525 (752)
19 CHL00095 clpC Clp protease ATP 100.0 4.4E-36 9.6E-41 366.9 34.3 437 254-746 258-784 (821)
20 TIGR03346 chaperone_ClpB ATP-d 100.0 8.9E-36 1.9E-40 365.2 33.0 450 254-748 252-830 (852)
21 KOG0740 AAA+-type ATPase [Post 100.0 6.1E-37 1.3E-41 339.0 17.7 282 516-826 144-427 (428)
22 KOG0731 AAA+-type ATPase conta 100.0 5.5E-36 1.2E-40 348.5 21.2 229 517-748 303-538 (774)
23 COG1223 Predicted ATPase (AAA+ 100.0 6.4E-36 1.4E-40 304.7 19.0 226 521-752 117-344 (368)
24 KOG0737 AAA+-type ATPase [Post 100.0 3.8E-36 8.3E-41 321.8 16.6 272 46-431 67-358 (386)
25 PRK10865 protein disaggregatio 100.0 1.2E-34 2.7E-39 353.9 29.2 440 254-746 257-831 (857)
26 KOG0652 26S proteasome regulat 100.0 1.9E-35 4E-40 300.9 17.6 257 505-802 152-413 (424)
27 KOG0727 26S proteasome regulat 100.0 3.4E-35 7.4E-40 297.8 18.2 226 519-746 149-379 (408)
28 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-35 2.7E-40 335.9 16.1 263 522-832 182-447 (693)
29 PTZ00454 26S protease regulato 100.0 1.2E-34 2.6E-39 325.8 22.8 245 519-803 139-388 (398)
30 KOG0726 26S proteasome regulat 100.0 1.9E-35 4.1E-40 305.0 13.7 242 521-802 181-427 (440)
31 KOG0728 26S proteasome regulat 100.0 9.9E-35 2.1E-39 294.2 18.6 242 522-803 144-390 (404)
32 PRK03992 proteasome-activating 100.0 1.5E-33 3.3E-38 317.8 22.3 250 519-808 125-379 (389)
33 COG0465 HflB ATP-dependent Zn 100.0 1.4E-33 3.1E-38 323.8 17.1 226 519-747 144-374 (596)
34 TIGR01241 FtsH_fam ATP-depende 100.0 9.8E-33 2.1E-37 321.0 22.7 268 517-825 47-319 (495)
35 KOG0729 26S proteasome regulat 100.0 2.4E-33 5.1E-38 286.3 14.9 225 520-746 172-401 (435)
36 PTZ00361 26 proteosome regulat 100.0 1E-32 2.2E-37 312.1 20.4 245 520-804 178-427 (438)
37 TIGR01243 CDC48 AAA family ATP 100.0 2.2E-32 4.7E-37 331.8 20.0 289 520-830 173-464 (733)
38 TIGR01242 26Sp45 26S proteasom 100.0 1.1E-30 2.4E-35 292.8 21.3 243 519-801 116-363 (364)
39 TIGR03689 pup_AAA proteasome A 100.0 2E-30 4.3E-35 297.2 23.5 220 517-742 174-409 (512)
40 CHL00176 ftsH cell division pr 100.0 9.9E-31 2.2E-35 308.6 20.3 226 518-746 176-406 (638)
41 KOG0651 26S proteasome regulat 100.0 2.8E-30 6E-35 269.7 13.3 233 521-755 128-365 (388)
42 PRK10733 hflB ATP-dependent me 100.0 2E-29 4.4E-34 300.3 22.0 226 518-746 145-375 (644)
43 KOG0732 AAA+-type ATPase conta 100.0 7E-30 1.5E-34 304.2 14.4 263 521-808 261-532 (1080)
44 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.5E-28 9.8E-33 298.6 18.9 198 552-756 1623-1870(2281)
45 KOG0741 AAA+-type ATPase [Post 100.0 3.8E-29 8.1E-34 275.1 8.3 255 527-806 223-495 (744)
46 PLN00020 ribulose bisphosphate 100.0 2.9E-27 6.4E-32 256.2 20.4 225 523-752 113-356 (413)
47 KOG1051 Chaperone HSP104 and r 99.9 3.8E-26 8.2E-31 271.6 20.0 370 254-673 266-710 (898)
48 COG1222 RPT1 ATP-dependent 26S 99.9 2.3E-25 5.1E-30 237.8 18.3 234 64-432 144-392 (406)
49 KOG0736 Peroxisome assembly fa 99.9 4.1E-25 8.8E-30 252.6 18.9 255 557-832 429-685 (953)
50 KOG0738 AAA+-type ATPase [Post 99.9 7.2E-23 1.6E-27 219.7 15.2 254 52-434 194-471 (491)
51 COG0464 SpoVK ATPases of the A 99.9 3E-21 6.4E-26 225.2 18.7 254 45-430 212-481 (494)
52 KOG0735 AAA+-type ATPase [Post 99.9 2.3E-21 5.1E-26 220.1 15.3 261 525-830 408-678 (952)
53 KOG0740 AAA+-type ATPase [Post 99.9 1.6E-21 3.4E-26 216.8 12.7 246 67-434 149-406 (428)
54 CHL00181 cbbX CbbX; Provisiona 99.9 1.2E-20 2.5E-25 204.7 17.5 214 526-750 24-261 (287)
55 KOG0734 AAA+-type ATPase conta 99.8 4.5E-20 9.7E-25 204.2 17.8 238 56-430 289-539 (752)
56 TIGR02881 spore_V_K stage V sp 99.8 3.3E-20 7.2E-25 198.9 16.1 216 523-750 4-245 (261)
57 CHL00195 ycf46 Ycf46; Provisio 99.8 7.4E-20 1.6E-24 210.5 19.7 238 60-434 217-465 (489)
58 TIGR02880 cbbX_cfxQ probable R 99.8 5.4E-20 1.2E-24 199.4 16.9 213 526-749 23-259 (284)
59 KOG0739 AAA+-type ATPase [Post 99.8 8.4E-21 1.8E-25 197.5 9.7 191 49-350 112-314 (439)
60 PTZ00454 26S protease regulato 99.8 1.2E-19 2.6E-24 204.6 19.2 235 63-432 137-386 (398)
61 PRK03992 proteasome-activating 99.8 2.8E-19 6E-24 202.1 19.8 236 64-434 124-374 (389)
62 PF05496 RuvB_N: Holliday junc 99.8 6.4E-20 1.4E-24 188.1 12.6 199 501-737 9-223 (233)
63 KOG0742 AAA+-type ATPase [Post 99.8 3.1E-19 6.8E-24 192.2 18.1 230 498-737 328-586 (630)
64 KOG0744 AAA+-type ATPase [Post 99.8 2.1E-19 4.6E-24 189.3 14.5 194 514-709 131-342 (423)
65 TIGR03689 pup_AAA proteasome A 99.8 1.4E-18 3.1E-23 199.8 17.3 260 61-430 172-476 (512)
66 PF00004 AAA: ATPase family as 99.8 3E-19 6.4E-24 169.7 9.6 130 562-693 1-132 (132)
67 PTZ00361 26 proteosome regulat 99.8 1.8E-18 3.8E-23 196.5 17.6 234 66-434 178-426 (438)
68 TIGR01241 FtsH_fam ATP-depende 99.8 4.9E-18 1.1E-22 198.0 18.6 236 60-432 44-295 (495)
69 KOG0743 AAA+-type ATPase [Post 99.8 5.2E-18 1.1E-22 187.4 15.8 220 522-750 198-430 (457)
70 COG2256 MGS1 ATPase related to 99.8 3.4E-17 7.3E-22 178.3 21.5 176 504-727 12-205 (436)
71 KOG0727 26S proteasome regulat 99.8 1.7E-17 3.6E-22 169.5 17.2 232 64-430 148-394 (408)
72 PRK00080 ruvB Holliday junctio 99.8 8.5E-17 1.8E-21 178.2 24.0 210 504-744 13-231 (328)
73 TIGR00763 lon ATP-dependent pr 99.8 7.2E-17 1.6E-21 197.2 25.4 205 526-747 321-558 (775)
74 COG1223 Predicted ATPase (AAA+ 99.7 2.3E-17 5.1E-22 169.4 14.6 225 66-430 116-353 (368)
75 KOG0731 AAA+-type ATPase conta 99.7 3.7E-17 7.9E-22 191.8 18.1 239 60-434 300-555 (774)
76 CHL00176 ftsH cell division pr 99.7 5.9E-17 1.3E-21 192.1 18.9 237 60-432 172-423 (638)
77 KOG2004 Mitochondrial ATP-depe 99.7 2.9E-16 6.3E-21 179.6 23.4 222 525-763 411-653 (906)
78 TIGR02639 ClpA ATP-dependent C 99.7 7.8E-17 1.7E-21 195.9 19.4 183 523-729 180-386 (731)
79 TIGR01242 26Sp45 26S proteasom 99.7 8E-17 1.7E-21 180.9 17.8 232 64-430 115-361 (364)
80 TIGR00635 ruvB Holliday juncti 99.7 2.3E-16 4.9E-21 172.7 20.4 199 523-743 2-209 (305)
81 COG2255 RuvB Holliday junction 99.7 1.3E-16 2.8E-21 166.6 17.1 195 504-736 14-224 (332)
82 KOG0728 26S proteasome regulat 99.7 8.1E-17 1.7E-21 164.4 15.2 228 68-430 144-386 (404)
83 CHL00206 ycf2 Ycf2; Provisiona 99.7 6.5E-17 1.4E-21 201.1 16.3 231 107-432 1628-1877(2281)
84 PRK12323 DNA polymerase III su 99.7 2.7E-16 5.8E-21 182.6 19.6 192 504-740 4-230 (700)
85 PRK14956 DNA polymerase III su 99.7 3E-16 6.5E-21 178.4 19.2 191 504-739 6-226 (484)
86 PRK07003 DNA polymerase III su 99.7 4E-16 8.6E-21 183.1 18.2 193 504-741 4-226 (830)
87 PLN00020 ribulose bisphosphate 99.7 1.2E-16 2.7E-21 174.0 12.6 173 68-350 112-313 (413)
88 KOG0726 26S proteasome regulat 99.7 2.8E-17 6.1E-22 170.9 7.0 229 67-430 181-424 (440)
89 KOG0732 AAA+-type ATPase conta 99.7 4.3E-16 9.3E-21 187.2 15.7 386 63-633 257-668 (1080)
90 PRK10733 hflB ATP-dependent me 99.7 1.2E-15 2.6E-20 182.6 18.9 238 59-432 140-392 (644)
91 PRK14960 DNA polymerase III su 99.7 2.2E-15 4.8E-20 175.4 19.7 192 505-741 4-225 (702)
92 PRK14949 DNA polymerase III su 99.7 2.4E-15 5.2E-20 179.7 20.0 192 504-740 4-225 (944)
93 PRK00149 dnaA chromosomal repl 99.7 1.5E-15 3.3E-20 175.3 17.8 194 521-739 118-326 (450)
94 PRK14958 DNA polymerase III su 99.7 2.8E-15 6.1E-20 174.3 19.9 193 504-741 4-226 (509)
95 PLN03025 replication factor C 99.7 5.2E-15 1.1E-19 163.3 20.5 186 506-737 3-202 (319)
96 TIGR02902 spore_lonB ATP-depen 99.7 1.5E-15 3.2E-20 178.0 17.0 204 503-746 52-315 (531)
97 PRK07994 DNA polymerase III su 99.6 3.8E-15 8.3E-20 175.7 19.9 192 504-740 4-225 (647)
98 PRK14962 DNA polymerase III su 99.6 2.9E-15 6.2E-20 172.6 18.5 189 505-738 3-221 (472)
99 PRK14961 DNA polymerase III su 99.6 6.5E-15 1.4E-19 165.3 20.2 192 504-740 4-225 (363)
100 TIGR00362 DnaA chromosomal rep 99.6 3.9E-15 8.5E-20 169.6 18.0 170 558-742 135-317 (405)
101 KOG0989 Replication factor C, 99.6 4.9E-15 1.1E-19 156.4 17.1 185 503-726 23-222 (346)
102 TIGR03345 VI_ClpV1 type VI sec 99.6 6.1E-15 1.3E-19 180.9 20.7 183 523-729 185-391 (852)
103 PRK08691 DNA polymerase III su 99.6 1E-14 2.2E-19 171.4 21.3 192 505-741 5-226 (709)
104 PRK13342 recombination factor 99.6 1.4E-14 3E-19 165.4 21.7 187 506-741 2-202 (413)
105 COG0466 Lon ATP-dependent Lon 99.6 1.3E-15 2.8E-20 175.5 13.1 216 526-756 324-558 (782)
106 PRK14964 DNA polymerase III su 99.6 9.5E-15 2.1E-19 167.8 20.2 191 506-741 3-223 (491)
107 PRK05342 clpX ATP-dependent pr 99.6 4.8E-15 1E-19 167.9 17.1 220 527-746 73-381 (412)
108 PRK04195 replication factor C 99.6 5.7E-15 1.2E-19 171.8 18.2 183 505-726 3-194 (482)
109 PRK12422 chromosomal replicati 99.6 1.2E-14 2.7E-19 166.5 20.4 229 558-837 140-391 (445)
110 KOG2028 ATPase related to the 99.6 6E-15 1.3E-19 157.7 16.5 183 505-735 127-337 (554)
111 PRK06645 DNA polymerase III su 99.6 1.1E-14 2.5E-19 168.4 19.9 195 503-742 8-236 (507)
112 PRK10787 DNA-binding ATP-depen 99.6 6.1E-14 1.3E-18 170.4 25.9 165 526-708 323-507 (784)
113 KOG0652 26S proteasome regulat 99.6 7E-15 1.5E-19 151.1 14.9 251 50-436 151-416 (424)
114 CHL00095 clpC Clp protease ATP 99.6 3.6E-14 7.7E-19 174.6 23.9 183 523-729 177-382 (821)
115 PRK14969 DNA polymerase III su 99.6 2.7E-14 5.8E-19 167.1 20.8 192 505-741 5-226 (527)
116 PRK11034 clpA ATP-dependent Cl 99.6 9.7E-15 2.1E-19 176.1 17.4 197 523-742 184-408 (758)
117 PRK14951 DNA polymerase III su 99.6 2.7E-14 5.9E-19 168.2 20.1 193 504-741 4-231 (618)
118 PRK05896 DNA polymerase III su 99.6 3.2E-14 6.9E-19 165.8 20.1 190 504-738 4-223 (605)
119 PRK10865 protein disaggregatio 99.6 8.7E-15 1.9E-19 180.0 16.2 180 523-726 176-379 (857)
120 PRK14957 DNA polymerase III su 99.6 3.5E-14 7.6E-19 165.3 19.2 192 504-740 4-225 (546)
121 PRK07940 DNA polymerase III su 99.6 2.7E-14 5.9E-19 161.0 17.3 186 523-736 3-215 (394)
122 TIGR00382 clpX endopeptidase C 99.6 2.7E-14 5.8E-19 161.1 17.1 231 502-745 67-386 (413)
123 PRK05563 DNA polymerase III su 99.6 7.5E-14 1.6E-18 164.4 21.0 190 505-739 5-224 (559)
124 PRK07764 DNA polymerase III su 99.6 3.7E-14 8E-19 172.3 18.7 188 506-738 5-224 (824)
125 TIGR03346 chaperone_ClpB ATP-d 99.6 2E-14 4.3E-19 177.4 16.6 183 523-729 171-377 (852)
126 PRK14952 DNA polymerase III su 99.6 6.1E-14 1.3E-18 164.6 19.4 188 506-738 3-222 (584)
127 PRK14088 dnaA chromosomal repl 99.6 5.5E-14 1.2E-18 161.4 18.5 166 559-738 130-308 (440)
128 PRK14963 DNA polymerase III su 99.6 4.7E-14 1E-18 163.8 18.1 189 506-739 4-221 (504)
129 PRK14086 dnaA chromosomal repl 99.6 1.4E-13 3E-18 160.6 21.6 164 560-738 315-491 (617)
130 PRK13341 recombination factor 99.6 8.5E-14 1.9E-18 167.3 20.4 188 505-741 17-223 (725)
131 PRK14959 DNA polymerase III su 99.6 9.6E-14 2.1E-18 162.6 19.9 189 504-737 4-222 (624)
132 PRK14965 DNA polymerase III su 99.6 1.3E-13 2.8E-18 163.1 21.2 188 505-737 5-222 (576)
133 PRK12402 replication factor C 99.6 7.2E-14 1.6E-18 154.7 18.0 193 505-737 4-228 (337)
134 PHA02544 44 clamp loader, smal 99.6 5.3E-14 1.1E-18 154.8 16.7 184 503-726 8-201 (316)
135 PRK07133 DNA polymerase III su 99.6 9.6E-14 2.1E-18 164.8 19.3 197 504-739 6-223 (725)
136 PRK14087 dnaA chromosomal repl 99.6 1.7E-13 3.7E-18 157.6 20.4 168 559-742 141-326 (450)
137 TIGR00390 hslU ATP-dependent p 99.5 6.1E-14 1.3E-18 156.3 16.0 177 527-703 14-342 (441)
138 TIGR02397 dnaX_nterm DNA polym 99.5 1.5E-13 3.3E-18 153.4 19.2 192 505-741 3-224 (355)
139 PRK08451 DNA polymerase III su 99.5 1.8E-13 3.9E-18 158.7 18.7 193 505-742 3-225 (535)
140 KOG0729 26S proteasome regulat 99.5 3.5E-14 7.6E-19 146.4 11.2 231 64-430 170-416 (435)
141 PRK05201 hslU ATP-dependent pr 99.5 9E-14 2E-18 155.0 15.0 177 527-703 17-344 (443)
142 PRK06305 DNA polymerase III su 99.5 2.8E-13 6.1E-18 155.8 19.4 191 504-739 5-226 (451)
143 COG0465 HflB ATP-dependent Zn 99.5 1.6E-13 3.6E-18 158.9 17.5 235 62-433 141-391 (596)
144 PRK14955 DNA polymerase III su 99.5 4.4E-13 9.6E-18 152.3 20.2 190 505-739 5-232 (397)
145 PRK14970 DNA polymerase III su 99.5 3E-13 6.4E-18 152.2 18.5 191 505-740 6-214 (367)
146 PRK06647 DNA polymerase III su 99.5 2.9E-13 6.3E-18 159.0 18.9 190 505-739 5-224 (563)
147 PRK09111 DNA polymerase III su 99.5 4.1E-13 8.9E-18 158.5 20.1 199 502-739 10-237 (598)
148 PRK14953 DNA polymerase III su 99.5 2.7E-13 6E-18 156.9 18.2 192 504-740 4-225 (486)
149 PF05673 DUF815: Protein of un 99.5 3.5E-13 7.6E-18 140.4 16.1 188 521-737 23-243 (249)
150 PRK06893 DNA replication initi 99.5 1E-12 2.3E-17 138.3 19.6 183 521-736 12-204 (229)
151 PRK00411 cdc6 cell division co 99.5 1.6E-12 3.4E-17 147.5 22.4 203 525-747 30-266 (394)
152 TIGR02928 orc1/cdc6 family rep 99.5 1.5E-12 3.3E-17 146.0 21.9 202 526-747 16-258 (365)
153 PRK08084 DNA replication initi 99.5 1.8E-12 3.9E-17 137.1 20.9 181 522-737 19-211 (235)
154 PRK00440 rfc replication facto 99.5 1E-12 2.3E-17 144.3 19.3 191 505-741 6-209 (319)
155 PRK14948 DNA polymerase III su 99.5 8.2E-13 1.8E-17 156.9 19.3 189 504-737 4-224 (620)
156 PTZ00112 origin recognition co 99.5 4.7E-12 1E-16 149.6 25.1 194 525-740 755-986 (1164)
157 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.6E-12 3.5E-17 135.8 18.4 184 522-741 12-207 (226)
158 PRK08903 DnaA regulatory inact 99.5 3.1E-12 6.7E-17 134.3 20.1 178 521-738 14-202 (227)
159 PRK14954 DNA polymerase III su 99.4 2.2E-12 4.9E-17 152.5 19.4 194 505-737 5-230 (620)
160 PRK14971 DNA polymerase III su 99.4 4.4E-12 9.6E-17 150.7 21.6 188 506-738 7-225 (614)
161 KOG0651 26S proteasome regulat 99.4 1.5E-13 3.4E-18 144.9 8.1 208 64-384 125-348 (388)
162 PRK14950 DNA polymerase III su 99.4 2E-12 4.3E-17 153.6 18.5 190 504-738 4-224 (585)
163 PRK08727 hypothetical protein; 99.4 8.8E-12 1.9E-16 131.7 21.3 144 560-726 42-196 (233)
164 TIGR02903 spore_lon_C ATP-depe 99.4 3.9E-12 8.5E-17 151.5 20.7 199 504-739 142-398 (615)
165 COG2812 DnaX DNA polymerase II 99.4 7E-13 1.5E-17 152.1 13.0 199 505-742 5-227 (515)
166 COG0593 DnaA ATPase involved i 99.4 5.4E-12 1.2E-16 141.1 19.2 170 558-742 112-293 (408)
167 KOG0991 Replication factor C, 99.4 6.3E-12 1.4E-16 128.0 15.5 192 504-736 15-216 (333)
168 PF00308 Bac_DnaA: Bacterial d 99.4 9.1E-12 2E-16 130.3 16.1 192 521-738 4-211 (219)
169 PRK06620 hypothetical protein; 99.4 3E-11 6.5E-16 126.0 19.7 170 521-737 12-191 (214)
170 PRK05642 DNA replication initi 99.4 3.2E-11 6.9E-16 127.5 19.3 156 559-737 45-210 (234)
171 TIGR02640 gas_vesic_GvpN gas v 99.4 9.9E-12 2.1E-16 133.6 15.2 135 559-707 21-198 (262)
172 PRK13407 bchI magnesium chelat 99.3 5.1E-12 1.1E-16 139.5 12.1 161 522-707 5-216 (334)
173 cd00009 AAA The AAA+ (ATPases 99.3 2.1E-11 4.6E-16 116.1 12.8 139 529-692 2-150 (151)
174 PRK09112 DNA polymerase III su 99.3 1.2E-10 2.7E-15 129.8 18.9 189 522-740 20-245 (351)
175 COG0542 clpA ATP-binding subun 99.3 4.7E-11 1E-15 142.0 16.2 181 523-727 168-372 (786)
176 COG2607 Predicted ATPase (AAA+ 99.3 9.7E-11 2.1E-15 120.3 15.7 186 521-735 56-273 (287)
177 CHL00081 chlI Mg-protoporyphyr 99.3 3.7E-11 8E-16 133.1 13.6 160 522-707 14-232 (350)
178 PRK05564 DNA polymerase III su 99.3 1.6E-10 3.4E-15 127.5 18.1 172 523-729 2-185 (313)
179 KOG1969 DNA replication checkp 99.2 1.9E-10 4.1E-15 133.0 18.4 218 503-745 258-517 (877)
180 PRK09087 hypothetical protein; 99.2 3.1E-10 6.7E-15 119.3 18.0 136 560-726 45-187 (226)
181 TIGR02442 Cob-chelat-sub cobal 99.2 1.1E-10 2.5E-15 139.9 16.2 159 523-708 2-215 (633)
182 TIGR01650 PD_CobS cobaltochela 99.2 9.8E-11 2.1E-15 127.9 14.2 137 559-708 64-234 (327)
183 COG1224 TIP49 DNA helicase TIP 99.2 2E-10 4.4E-15 123.6 15.7 80 666-746 322-415 (450)
184 COG1219 ClpX ATP-dependent pro 99.2 9.6E-11 2.1E-15 124.4 12.7 132 527-658 63-204 (408)
185 TIGR02030 BchI-ChlI magnesium 99.2 1.1E-10 2.5E-15 129.1 13.9 158 523-707 2-219 (337)
186 PF01078 Mg_chelatase: Magnesi 99.2 1.7E-11 3.8E-16 125.4 5.4 145 523-697 1-205 (206)
187 PF07724 AAA_2: AAA domain (Cd 99.2 7.8E-11 1.7E-15 118.5 9.7 115 557-674 1-130 (171)
188 TIGR00678 holB DNA polymerase 99.2 6.1E-10 1.3E-14 113.6 15.8 145 557-727 12-184 (188)
189 PRK07471 DNA polymerase III su 99.2 3.7E-10 8E-15 126.7 15.4 182 523-736 17-239 (365)
190 COG1474 CDC6 Cdc6-related prot 99.2 8.8E-10 1.9E-14 123.5 18.1 210 527-758 19-260 (366)
191 PF00004 AAA: ATPase family as 99.2 2.1E-10 4.7E-15 108.7 11.2 119 112-334 1-132 (132)
192 PHA02244 ATPase-like protein 99.1 4E-10 8.6E-15 124.5 14.1 124 559-696 119-263 (383)
193 PRK07399 DNA polymerase III su 99.1 4.2E-10 9.2E-15 123.8 14.0 180 523-733 2-220 (314)
194 PRK11331 5-methylcytosine-spec 99.1 6.7E-10 1.5E-14 125.7 14.9 142 524-692 174-356 (459)
195 COG1220 HslU ATP-dependent pro 99.1 4E-10 8.7E-15 120.5 11.7 69 527-595 17-86 (444)
196 PF06068 TIP49: TIP49 C-termin 99.1 1.1E-09 2.3E-14 120.1 15.0 102 619-738 279-394 (398)
197 PF07728 AAA_5: AAA domain (dy 99.1 1.8E-10 4E-15 111.3 7.9 112 561-685 1-139 (139)
198 KOG0744 AAA+-type ATPase [Post 99.1 7.4E-10 1.6E-14 117.9 12.1 191 60-354 131-346 (423)
199 KOG2035 Replication factor C, 99.1 3.1E-09 6.7E-14 111.2 16.2 186 506-730 3-224 (351)
200 COG0714 MoxR-like ATPases [Gen 99.1 3E-10 6.6E-15 126.1 9.5 153 527-706 26-202 (329)
201 PRK08058 DNA polymerase III su 99.1 2.3E-09 5.1E-14 119.0 16.0 163 523-723 3-194 (329)
202 PF05621 TniB: Bacterial TniB 99.0 3.7E-09 7.9E-14 113.8 15.6 208 527-752 36-278 (302)
203 PRK04132 replication factor C 99.0 2.9E-09 6.3E-14 129.3 15.9 159 558-740 563-736 (846)
204 TIGR02881 spore_V_K stage V sp 99.0 2.3E-09 5E-14 115.2 13.6 83 267-349 105-192 (261)
205 COG0470 HolB ATPase involved i 99.0 1.8E-09 3.9E-14 118.8 13.0 147 526-702 2-176 (325)
206 KOG0745 Putative ATP-dependent 99.0 2.5E-09 5.5E-14 117.5 13.6 98 560-657 227-332 (564)
207 smart00382 AAA ATPases associa 99.0 1.3E-09 2.7E-14 102.7 9.9 128 559-694 2-147 (148)
208 PRK05707 DNA polymerase III su 99.0 6.3E-09 1.4E-13 115.2 15.6 151 557-729 20-198 (328)
209 TIGR03015 pepcterm_ATPase puta 99.0 5.6E-08 1.2E-12 104.4 22.3 192 559-802 43-267 (269)
210 smart00350 MCM minichromosome 99.0 3.9E-09 8.4E-14 123.8 14.2 167 527-709 205-402 (509)
211 TIGR02974 phageshock_pspF psp 99.0 4.9E-09 1.1E-13 116.4 14.1 189 527-743 1-233 (329)
212 TIGR00602 rad24 checkpoint pro 99.0 5E-09 1.1E-13 124.3 14.8 201 503-738 71-323 (637)
213 CHL00181 cbbX CbbX; Provisiona 99.0 2.3E-09 5E-14 116.7 10.9 85 267-351 122-212 (287)
214 TIGR02031 BchD-ChlD magnesium 99.0 1.3E-08 2.7E-13 121.2 17.6 135 559-707 16-174 (589)
215 TIGR01817 nifA Nif-specific re 99.0 2.9E-09 6.2E-14 125.9 12.0 194 522-743 193-428 (534)
216 PRK13531 regulatory ATPase Rav 98.9 3.9E-09 8.5E-14 120.4 11.1 151 527-705 22-192 (498)
217 TIGR00764 lon_rel lon-related 98.9 2.2E-08 4.7E-13 119.4 17.7 49 523-586 16-64 (608)
218 TIGR00368 Mg chelatase-related 98.9 4.1E-09 9E-14 122.5 11.3 145 523-697 190-394 (499)
219 COG3829 RocR Transcriptional r 98.9 2.6E-09 5.7E-14 121.4 8.5 193 521-741 241-477 (560)
220 KOG0742 AAA+-type ATPase [Post 98.9 8.2E-09 1.8E-13 112.6 11.8 137 252-399 430-587 (630)
221 PRK11608 pspF phage shock prot 98.9 9.9E-09 2.1E-13 113.9 12.8 158 523-707 4-194 (326)
222 PRK15424 propionate catabolism 98.9 1.6E-08 3.5E-13 118.4 14.3 192 523-742 217-464 (538)
223 TIGR00390 hslU ATP-dependent p 98.9 6.4E-08 1.4E-12 108.6 18.2 84 47-146 1-84 (441)
224 PF00158 Sigma54_activat: Sigm 98.9 6.8E-09 1.5E-13 104.2 9.3 122 527-674 1-144 (168)
225 PRK15429 formate hydrogenlyase 98.9 2.1E-08 4.5E-13 122.1 15.2 194 522-743 373-609 (686)
226 PRK07993 DNA polymerase III su 98.9 5.9E-08 1.3E-12 107.8 17.3 152 557-731 22-201 (334)
227 PRK05201 hslU ATP-dependent pr 98.9 2.8E-08 6.1E-13 111.5 14.6 86 46-147 3-88 (443)
228 PRK11388 DNA-binding transcrip 98.9 9.9E-09 2.1E-13 123.9 11.8 193 522-742 322-553 (638)
229 COG1221 PspF Transcriptional r 98.9 1.3E-08 2.8E-13 114.0 11.8 195 522-745 75-311 (403)
230 TIGR02329 propionate_PrpR prop 98.9 1.7E-08 3.7E-13 118.2 13.3 193 522-742 209-449 (526)
231 PRK06871 DNA polymerase III su 98.8 7.4E-08 1.6E-12 106.2 17.0 149 557-729 22-198 (325)
232 PF07726 AAA_3: ATPase family 98.8 7.6E-10 1.6E-14 104.8 1.1 106 561-685 1-129 (131)
233 PRK10820 DNA-binding transcrip 98.8 1.8E-08 3.8E-13 118.6 12.7 194 521-742 200-436 (520)
234 PRK08769 DNA polymerase III su 98.8 5.2E-08 1.1E-12 107.3 15.4 169 531-732 10-206 (319)
235 TIGR02880 cbbX_cfxQ probable R 98.8 1.8E-08 4E-13 109.6 11.6 85 267-351 121-211 (284)
236 COG2204 AtoC Response regulato 98.8 1.8E-08 3.9E-13 114.7 11.6 196 523-745 139-376 (464)
237 smart00763 AAA_PrkA PrkA AAA d 98.8 3.5E-08 7.6E-13 109.2 13.2 63 523-592 48-118 (361)
238 PF13177 DNA_pol3_delta2: DNA 98.8 2.5E-08 5.3E-13 99.6 10.8 133 529-693 1-160 (162)
239 PRK05022 anaerobic nitric oxid 98.8 3.7E-08 8.1E-13 115.7 14.1 194 524-744 186-421 (509)
240 COG1239 ChlI Mg-chelatase subu 98.8 1.4E-07 3E-12 105.0 17.1 168 522-715 14-240 (423)
241 KOG1942 DNA helicase, TBP-inte 98.8 6.6E-08 1.4E-12 101.8 13.5 100 619-736 297-411 (456)
242 COG3604 FhlA Transcriptional r 98.8 3.5E-08 7.6E-13 111.0 11.8 196 517-743 215-456 (550)
243 KOG0990 Replication factor C, 98.8 1.2E-08 2.7E-13 108.9 7.4 179 505-725 30-223 (360)
244 PRK06964 DNA polymerase III su 98.8 8.9E-08 1.9E-12 106.3 14.4 132 557-705 19-202 (342)
245 KOG1514 Origin recognition com 98.8 1.7E-07 3.6E-12 109.1 16.9 199 527-746 398-631 (767)
246 COG0606 Predicted ATPase with 98.8 3.6E-09 7.8E-14 118.9 3.2 47 522-583 176-222 (490)
247 PRK12377 putative replication 98.7 4.8E-08 1E-12 104.0 10.4 111 507-630 56-175 (248)
248 PRK08116 hypothetical protein; 98.7 5.3E-08 1.2E-12 105.1 9.6 171 509-704 69-257 (268)
249 KOG2227 Pre-initiation complex 98.7 4.5E-07 9.7E-12 101.4 16.9 187 526-735 151-368 (529)
250 PRK07952 DNA replication prote 98.7 9E-08 1.9E-12 101.7 10.5 153 507-685 54-221 (244)
251 PF03215 Rad17: Rad17 cell cyc 98.7 2.2E-07 4.9E-12 108.5 14.7 208 503-744 6-269 (519)
252 PRK06090 DNA polymerase III su 98.7 5.8E-07 1.3E-11 99.0 16.7 161 531-729 9-196 (319)
253 TIGR00763 lon ATP-dependent pr 98.6 6.6E-07 1.4E-11 110.2 18.1 77 266-349 414-506 (775)
254 TIGR02915 PEP_resp_reg putativ 98.6 1.7E-07 3.6E-12 108.3 12.0 193 524-743 138-372 (445)
255 PTZ00111 DNA replication licen 98.6 1.3E-07 2.8E-12 114.7 10.7 166 527-708 452-658 (915)
256 PRK00080 ruvB Holliday junctio 98.6 1.6E-06 3.5E-11 96.4 18.4 210 69-432 23-250 (328)
257 KOG2680 DNA helicase TIP49, TB 98.6 9.2E-07 2E-11 93.7 14.9 73 674-747 339-413 (454)
258 PRK09862 putative ATP-dependen 98.6 8E-08 1.7E-12 111.5 7.4 145 523-697 189-391 (506)
259 PRK13765 ATP-dependent proteas 98.5 4.4E-07 9.5E-12 108.2 12.0 48 522-584 28-75 (637)
260 PRK10923 glnG nitrogen regulat 98.5 1E-06 2.2E-11 102.6 14.6 193 524-743 137-371 (469)
261 PRK08699 DNA polymerase III su 98.5 6.8E-07 1.5E-11 99.0 12.3 132 557-705 19-183 (325)
262 PRK05342 clpX ATP-dependent pr 98.5 1.8E-06 3.9E-11 98.5 15.7 85 60-146 59-145 (412)
263 PRK13406 bchD magnesium chelat 98.5 1E-06 2.2E-11 104.3 13.8 125 559-698 25-173 (584)
264 PF01637 Arch_ATPase: Archaeal 98.5 2.2E-07 4.8E-12 96.4 7.3 180 528-729 2-229 (234)
265 TIGR00635 ruvB Holliday juncti 98.5 1.7E-06 3.6E-11 94.9 14.5 61 69-141 2-62 (305)
266 PRK08181 transposase; Validate 98.5 3.3E-07 7.1E-12 98.8 8.4 71 559-631 106-180 (269)
267 COG2256 MGS1 ATPase related to 98.5 6.8E-07 1.5E-11 98.6 10.4 72 267-348 104-176 (436)
268 TIGR00382 clpX endopeptidase C 98.4 4.5E-06 9.7E-11 94.9 16.4 67 79-145 83-152 (413)
269 PRK11361 acetoacetate metaboli 98.4 3.2E-06 6.8E-11 98.0 15.6 192 525-743 143-376 (457)
270 PRK06835 DNA replication prote 98.4 5.4E-07 1.2E-11 99.9 8.4 70 559-630 183-258 (329)
271 PRK00149 dnaA chromosomal repl 98.4 6.3E-06 1.4E-10 95.6 17.6 78 267-349 211-294 (450)
272 PRK06921 hypothetical protein; 98.4 1.1E-06 2.4E-11 94.7 9.0 69 558-629 116-188 (266)
273 PF13173 AAA_14: AAA domain 98.3 5.4E-07 1.2E-11 86.2 5.2 69 560-630 3-73 (128)
274 PF14532 Sigma54_activ_2: Sigm 98.3 6.5E-07 1.4E-11 86.8 5.6 60 558-631 20-82 (138)
275 PRK06526 transposase; Provisio 98.3 6.8E-07 1.5E-11 95.7 6.1 72 558-631 97-172 (254)
276 PRK15115 response regulator Gl 98.3 9.3E-06 2E-10 93.8 16.0 168 559-742 157-366 (444)
277 TIGR01818 ntrC nitrogen regula 98.3 3.8E-06 8.3E-11 97.5 12.5 193 526-744 135-368 (463)
278 PRK08939 primosomal protein Dn 98.3 1.3E-06 2.8E-11 96.1 7.8 118 506-630 108-229 (306)
279 PF01695 IstB_IS21: IstB-like 98.3 4.8E-07 1E-11 91.8 4.1 71 558-630 46-120 (178)
280 PRK14962 DNA polymerase III su 98.3 1E-05 2.2E-10 94.0 15.4 72 268-348 118-189 (472)
281 PRK05917 DNA polymerase III su 98.3 8.4E-06 1.8E-10 88.4 13.5 121 557-694 17-154 (290)
282 COG1484 DnaC DNA replication p 98.3 3.1E-06 6.8E-11 90.6 10.0 71 558-630 104-179 (254)
283 PRK13342 recombination factor 98.3 9.2E-06 2E-10 93.2 14.0 76 266-350 91-166 (413)
284 PF13401 AAA_22: AAA domain; P 98.3 3.1E-06 6.8E-11 80.4 8.5 73 559-631 4-100 (131)
285 PHA02544 44 clamp loader, smal 98.3 1.9E-05 4.1E-10 87.1 15.9 77 267-351 100-176 (316)
286 KOG1970 Checkpoint RAD17-RFC c 98.2 3.4E-05 7.4E-10 88.1 17.6 212 503-743 69-320 (634)
287 PRK07276 DNA polymerase III su 98.2 3.3E-05 7.2E-10 84.0 17.0 171 529-737 6-199 (290)
288 KOG0478 DNA replication licens 98.2 1.7E-05 3.6E-10 92.3 15.2 171 527-708 431-627 (804)
289 PF12775 AAA_7: P-loop contain 98.2 1.6E-06 3.5E-11 93.8 6.2 141 558-709 32-195 (272)
290 PRK09183 transposase/IS protei 98.2 2.9E-06 6.2E-11 91.3 8.0 72 558-630 101-176 (259)
291 PRK04195 replication factor C 98.2 3.8E-05 8.3E-10 89.9 17.8 161 69-349 12-174 (482)
292 KOG2170 ATPase of the AAA+ sup 98.2 3E-05 6.6E-10 82.8 15.0 100 527-632 84-192 (344)
293 TIGR02928 orc1/cdc6 family rep 98.2 0.00015 3.3E-09 81.4 21.5 94 252-349 116-213 (365)
294 COG3283 TyrR Transcriptional r 98.2 1.9E-05 4.1E-10 85.8 13.2 152 522-700 201-376 (511)
295 PF12774 AAA_6: Hydrolytic ATP 98.2 1.5E-05 3.4E-10 84.1 12.3 135 559-712 32-182 (231)
296 TIGR00362 DnaA chromosomal rep 98.1 3.3E-05 7.1E-10 88.5 14.9 78 268-350 200-283 (405)
297 PRK10365 transcriptional regul 98.1 1.4E-05 3.1E-10 92.0 11.9 155 527-708 141-328 (441)
298 TIGR02640 gas_vesic_GvpN gas v 98.1 1.9E-05 4.1E-10 85.1 11.8 77 267-347 105-197 (262)
299 COG1241 MCM2 Predicted ATPase 98.1 1.9E-05 4.2E-10 94.0 12.7 175 527-710 288-486 (682)
300 PRK07132 DNA polymerase III su 98.1 8.9E-05 1.9E-09 81.2 16.7 157 532-726 3-177 (299)
301 PF05496 RuvB_N: Holliday junc 98.1 2E-05 4.3E-10 82.0 10.6 74 267-346 101-190 (233)
302 KOG0480 DNA replication licens 98.1 4.2E-05 9.1E-10 88.4 14.2 202 526-740 346-571 (764)
303 PRK08084 DNA replication initi 98.1 3.1E-05 6.8E-10 82.0 12.4 74 269-346 99-178 (235)
304 TIGR02902 spore_lonB ATP-depen 98.1 0.00013 2.9E-09 86.2 18.9 100 298-430 231-330 (531)
305 PF05729 NACHT: NACHT domain 98.0 4.1E-05 9E-10 75.1 11.6 140 561-709 2-165 (166)
306 KOG0482 DNA replication licens 98.0 5.9E-05 1.3E-09 85.1 12.4 205 527-740 344-586 (721)
307 PRK14088 dnaA chromosomal repl 97.9 9.7E-05 2.1E-09 85.4 14.2 78 267-348 194-276 (440)
308 PRK00411 cdc6 cell division co 97.9 0.00067 1.4E-08 77.2 20.8 92 252-348 125-220 (394)
309 PRK06645 DNA polymerase III su 97.9 0.00013 2.8E-09 85.5 15.0 73 269-350 130-202 (507)
310 cd01120 RecA-like_NTPases RecA 97.9 4.1E-05 8.8E-10 74.7 9.4 71 562-632 2-99 (165)
311 PF00493 MCM: MCM2/3/5 family 97.9 1.5E-06 3.2E-11 96.8 -1.2 163 527-711 26-225 (331)
312 PRK13341 recombination factor 97.9 0.00011 2.3E-09 89.5 14.4 75 267-350 109-183 (725)
313 PF05673 DUF815: Protein of un 97.9 0.00015 3.4E-09 76.3 13.6 160 67-348 23-207 (249)
314 COG5271 MDN1 AAA ATPase contai 97.9 0.00022 4.8E-09 88.8 16.3 134 560-707 889-1047(4600)
315 PRK05818 DNA polymerase III su 97.9 0.00012 2.7E-09 77.9 12.7 121 557-694 5-147 (261)
316 PRK10787 DNA-binding ATP-depen 97.9 0.00043 9.3E-09 85.3 19.2 75 267-349 417-507 (784)
317 PRK14956 DNA polymerase III su 97.9 0.00018 3.9E-09 83.0 14.8 72 267-347 121-192 (484)
318 PRK12402 replication factor C 97.9 0.00037 8.1E-09 77.2 17.2 72 268-348 126-197 (337)
319 PF00308 Bac_DnaA: Bacterial d 97.9 0.00015 3.1E-09 76.2 13.0 76 268-348 98-179 (219)
320 PRK12422 chromosomal replicati 97.9 7.6E-05 1.6E-09 86.3 11.8 78 267-349 202-285 (445)
321 PRK14960 DNA polymerase III su 97.9 0.00017 3.7E-09 85.6 14.7 119 267-398 118-241 (702)
322 PRK14086 dnaA chromosomal repl 97.9 0.00021 4.6E-09 84.6 15.5 77 267-348 377-459 (617)
323 KOG2228 Origin recognition com 97.9 6.9E-05 1.5E-09 81.2 10.2 161 527-708 26-220 (408)
324 PF03969 AFG1_ATPase: AFG1-lik 97.9 5.5E-05 1.2E-09 85.1 10.0 103 556-674 59-168 (362)
325 PRK14961 DNA polymerase III su 97.8 0.00023 5E-09 80.4 14.7 72 268-348 120-191 (363)
326 TIGR03420 DnaA_homol_Hda DnaA 97.8 0.00028 6E-09 73.7 14.4 64 67-145 11-77 (226)
327 KOG1051 Chaperone HSP104 and r 97.8 7.8E-05 1.7E-09 90.9 11.1 162 524-709 185-365 (898)
328 PF00910 RNA_helicase: RNA hel 97.8 4.7E-05 1E-09 70.6 7.3 62 562-631 1-62 (107)
329 PRK07940 DNA polymerase III su 97.8 0.00023 5E-09 81.0 14.2 68 268-345 118-186 (394)
330 COG1618 Predicted nucleotide k 97.8 0.00012 2.5E-09 72.0 9.8 26 558-583 4-29 (179)
331 TIGR02237 recomb_radB DNA repa 97.8 9.3E-05 2E-09 76.6 9.9 79 554-632 7-111 (209)
332 TIGR01650 PD_CobS cobaltochela 97.8 0.00029 6.2E-09 77.7 13.9 77 267-347 134-232 (327)
333 PF00931 NB-ARC: NB-ARC domain 97.8 0.00012 2.6E-09 79.2 11.0 157 558-735 18-202 (287)
334 PLN03210 Resistant to P. syrin 97.8 0.00019 4.1E-09 92.6 13.8 172 523-728 182-389 (1153)
335 KOG1968 Replication factor C, 97.7 3.4E-05 7.3E-10 94.6 6.3 195 525-738 320-531 (871)
336 PRK08116 hypothetical protein; 97.7 0.00035 7.6E-09 75.6 13.2 91 51-150 65-158 (268)
337 PRK14963 DNA polymerase III su 97.7 0.00083 1.8E-08 78.9 17.2 74 267-349 116-189 (504)
338 PRK07764 DNA polymerase III su 97.7 0.0011 2.4E-08 81.8 18.3 75 267-350 120-194 (824)
339 TIGR02397 dnaX_nterm DNA polym 97.7 0.00051 1.1E-08 76.9 14.0 71 269-348 119-189 (355)
340 COG5271 MDN1 AAA ATPase contai 97.7 0.00012 2.7E-09 90.9 9.2 137 558-708 1542-1704(4600)
341 PRK14964 DNA polymerase III su 97.7 0.00064 1.4E-08 79.2 14.7 73 268-349 117-189 (491)
342 PRK07003 DNA polymerase III su 97.6 0.00051 1.1E-08 82.5 13.9 75 267-350 119-193 (830)
343 PRK12323 DNA polymerase III su 97.6 0.00036 7.9E-09 82.7 12.5 74 267-349 124-197 (700)
344 PRK06893 DNA replication initi 97.6 0.00022 4.7E-09 75.3 9.8 77 267-347 91-173 (229)
345 PHA00729 NTP-binding motif con 97.6 6.5E-05 1.4E-09 78.6 5.6 27 560-586 18-44 (226)
346 PLN03025 replication factor C 97.6 0.00044 9.6E-09 76.6 12.1 72 267-347 99-170 (319)
347 PRK08691 DNA polymerase III su 97.6 0.00061 1.3E-08 81.6 13.8 74 268-350 120-193 (709)
348 KOG0743 AAA+-type ATPase [Post 97.6 0.0007 1.5E-08 76.4 13.3 163 77-348 205-383 (457)
349 PRK14949 DNA polymerase III su 97.6 0.00087 1.9E-08 82.0 14.8 75 267-350 119-193 (944)
350 PRK15455 PrkA family serine pr 97.6 8E-05 1.7E-09 86.8 5.8 63 523-592 74-137 (644)
351 COG0714 MoxR-like ATPases [Gen 97.6 0.0003 6.5E-09 78.3 10.2 39 108-146 42-80 (329)
352 cd01121 Sms Sms (bacterial rad 97.6 0.00048 1E-08 77.9 11.5 99 555-653 78-195 (372)
353 TIGR01618 phage_P_loop phage n 97.6 8.6E-05 1.9E-09 77.7 5.1 110 559-671 12-142 (220)
354 PRK08903 DnaA regulatory inact 97.5 0.0012 2.5E-08 69.4 13.6 74 267-346 90-168 (227)
355 cd01124 KaiC KaiC is a circadi 97.5 0.00041 8.9E-09 70.1 9.8 71 562-632 2-109 (187)
356 PRK14959 DNA polymerase III su 97.5 0.0011 2.3E-08 79.1 14.6 74 267-349 119-192 (624)
357 PF13207 AAA_17: AAA domain; P 97.5 9.5E-05 2.1E-09 69.3 4.3 31 562-592 2-32 (121)
358 PRK06620 hypothetical protein; 97.5 0.00053 1.2E-08 71.7 10.3 71 269-347 87-159 (214)
359 PRK14087 dnaA chromosomal repl 97.5 0.00058 1.3E-08 79.2 11.6 78 267-349 206-289 (450)
360 PRK09361 radB DNA repair and r 97.5 0.00052 1.1E-08 72.0 10.0 40 554-593 18-60 (225)
361 PRK11823 DNA repair protein Ra 97.5 0.00069 1.5E-08 78.5 11.8 99 555-653 76-193 (446)
362 PF14516 AAA_35: AAA-like doma 97.5 0.0035 7.5E-08 70.0 17.0 168 557-737 29-241 (331)
363 TIGR02012 tigrfam_recA protein 97.5 0.00069 1.5E-08 74.9 11.1 79 555-633 51-148 (321)
364 PRK05563 DNA polymerase III su 97.5 0.0013 2.8E-08 78.4 14.3 74 267-349 119-192 (559)
365 cd00009 AAA The AAA+ (ATPases 97.5 0.0011 2.3E-08 62.7 11.1 39 108-146 18-59 (151)
366 PRK14958 DNA polymerase III su 97.4 0.0034 7.4E-08 73.9 17.0 72 269-349 121-192 (509)
367 PRK05896 DNA polymerase III su 97.4 0.0015 3.2E-08 77.6 13.9 72 270-350 122-193 (605)
368 PRK14951 DNA polymerase III su 97.4 0.0037 8.1E-08 74.8 17.2 87 253-349 106-197 (618)
369 PRK07994 DNA polymerase III su 97.4 0.0044 9.6E-08 74.5 17.6 74 267-349 119-192 (647)
370 PF06309 Torsin: Torsin; Inte 97.4 0.00057 1.2E-08 65.0 8.1 62 503-583 16-77 (127)
371 KOG0481 DNA replication licens 97.4 0.0003 6.5E-09 79.6 7.2 174 527-706 333-527 (729)
372 PRK05642 DNA replication initi 97.4 0.00093 2E-08 70.8 10.6 72 270-346 100-177 (234)
373 TIGR00678 holB DNA polymerase 97.4 0.0015 3.3E-08 66.5 11.7 71 267-346 96-166 (188)
374 PRK08118 topology modulation p 97.4 0.00038 8.2E-09 69.9 7.0 32 561-592 3-34 (167)
375 KOG2028 ATPase related to the 97.4 0.0026 5.6E-08 69.7 13.5 70 267-346 222-292 (554)
376 PF07728 AAA_5: AAA domain (dy 97.4 0.00018 3.9E-09 69.4 4.4 35 112-146 2-36 (139)
377 PRK14948 DNA polymerase III su 97.4 0.0022 4.8E-08 77.1 14.4 88 253-349 103-194 (620)
378 PRK14965 DNA polymerase III su 97.3 0.0017 3.8E-08 77.6 13.3 73 269-350 121-193 (576)
379 PRK11331 5-methylcytosine-spec 97.3 0.001 2.2E-08 76.2 10.7 27 108-134 193-219 (459)
380 COG1485 Predicted ATPase [Gene 97.3 0.0014 3E-08 72.1 11.2 101 557-674 63-171 (367)
381 PRK08533 flagellar accessory p 97.3 0.0013 2.8E-08 69.5 10.6 77 555-631 20-130 (230)
382 PRK07261 topology modulation p 97.3 0.00054 1.2E-08 69.1 7.2 34 561-594 2-35 (171)
383 PRK14957 DNA polymerase III su 97.3 0.0034 7.3E-08 74.2 14.6 75 267-350 119-193 (546)
384 TIGR02688 conserved hypothetic 97.3 0.00093 2E-08 75.7 9.4 62 558-631 208-273 (449)
385 PRK06305 DNA polymerase III su 97.3 0.0034 7.5E-08 72.9 14.5 74 266-348 120-193 (451)
386 PRK14953 DNA polymerase III su 97.3 0.0037 8E-08 73.2 14.8 74 267-349 119-192 (486)
387 cd00983 recA RecA is a bacter 97.3 0.0015 3.3E-08 72.3 10.9 79 555-633 51-148 (325)
388 PTZ00112 origin recognition co 97.3 0.013 2.9E-07 71.3 19.3 93 252-348 855-949 (1164)
389 COG1219 ClpX ATP-dependent pro 97.3 0.00024 5.2E-09 76.6 4.3 85 61-146 50-134 (408)
390 PRK00131 aroK shikimate kinase 97.3 0.00028 6.1E-09 70.2 4.7 34 558-591 3-36 (175)
391 COG3267 ExeA Type II secretory 97.3 0.0058 1.2E-07 64.6 14.3 174 561-746 53-256 (269)
392 PF13191 AAA_16: AAA ATPase do 97.2 0.00079 1.7E-08 67.5 7.8 59 527-595 2-63 (185)
393 PRK00771 signal recognition pa 97.2 0.0088 1.9E-07 69.0 17.2 38 558-595 94-134 (437)
394 PRK04132 replication factor C 97.2 0.0042 9.1E-08 76.6 15.3 73 268-349 631-703 (846)
395 PRK13407 bchI magnesium chelat 97.2 0.0068 1.5E-07 67.6 15.7 75 267-348 128-216 (334)
396 PRK12723 flagellar biosynthesi 97.2 0.0028 6.1E-08 71.9 12.8 113 559-685 174-309 (388)
397 PRK09087 hypothetical protein; 97.2 0.001 2.2E-08 70.2 8.8 74 270-348 90-166 (226)
398 PRK14952 DNA polymerase III su 97.2 0.0035 7.6E-08 74.7 14.1 74 268-350 119-192 (584)
399 COG3284 AcoR Transcriptional a 97.2 0.00065 1.4E-08 79.5 7.7 171 559-743 336-540 (606)
400 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0013 2.8E-08 71.1 9.5 93 522-628 57-159 (264)
401 PRK00440 rfc replication facto 97.2 0.0098 2.1E-07 65.3 16.6 74 267-349 102-175 (319)
402 smart00382 AAA ATPases associa 97.2 0.0034 7.3E-08 58.6 11.2 38 109-146 2-42 (148)
403 KOG0477 DNA replication licens 97.2 0.0004 8.6E-09 80.3 5.4 153 527-691 451-629 (854)
404 TIGR02903 spore_lon_C ATP-depe 97.2 0.0049 1.1E-07 74.3 14.9 45 300-349 323-367 (615)
405 PRK07133 DNA polymerase III su 97.2 0.0033 7.1E-08 76.1 13.2 74 268-350 119-192 (725)
406 PRK08727 hypothetical protein; 97.2 0.0059 1.3E-07 64.7 13.7 77 267-347 93-174 (233)
407 KOG0479 DNA replication licens 97.2 0.00094 2E-08 76.8 7.9 171 527-708 303-499 (818)
408 PRK14969 DNA polymerase III su 97.2 0.0026 5.6E-08 75.3 12.1 73 268-349 120-192 (527)
409 PRK14955 DNA polymerase III su 97.2 0.0031 6.6E-08 72.2 12.3 87 253-348 109-199 (397)
410 PHA02624 large T antigen; Prov 97.2 0.0024 5.1E-08 75.2 11.4 122 558-693 430-561 (647)
411 PF03266 NTPase_1: NTPase; In 97.2 0.00012 2.5E-09 73.8 0.6 23 561-583 1-23 (168)
412 COG1373 Predicted ATPase (AAA+ 97.1 0.0017 3.7E-08 74.2 9.9 121 561-701 39-161 (398)
413 cd01394 radB RadB. The archaea 97.1 0.0024 5.3E-08 66.5 10.3 40 554-593 14-56 (218)
414 PRK06647 DNA polymerase III su 97.1 0.0046 1E-07 73.6 13.7 73 267-348 119-191 (563)
415 PRK06067 flagellar accessory p 97.1 0.0025 5.5E-08 67.3 10.4 39 555-593 21-62 (234)
416 PRK09354 recA recombinase A; P 97.1 0.0032 6.9E-08 70.3 11.5 78 555-632 56-152 (349)
417 TIGR03015 pepcterm_ATPase puta 97.1 0.022 4.7E-07 61.1 17.2 155 252-433 107-267 (269)
418 PF13671 AAA_33: AAA domain; P 97.1 0.001 2.2E-08 64.1 6.2 33 562-596 2-34 (143)
419 PRK14970 DNA polymerase III su 97.0 0.0071 1.5E-07 68.3 13.7 73 267-348 108-180 (367)
420 PRK04841 transcriptional regul 97.0 0.0095 2.1E-07 75.0 16.2 154 559-729 32-220 (903)
421 cd01393 recA_like RecA is a b 97.0 0.0039 8.4E-08 65.2 10.8 41 554-594 14-63 (226)
422 COG4650 RtcR Sigma54-dependent 97.0 0.0011 2.4E-08 70.5 6.5 70 559-632 208-296 (531)
423 TIGR02030 BchI-ChlI magnesium 97.0 0.026 5.6E-07 63.1 17.7 76 266-348 130-219 (337)
424 PF07724 AAA_2: AAA domain (Cd 97.0 0.0016 3.5E-08 65.7 7.5 37 111-147 5-45 (171)
425 cd01131 PilT Pilus retraction 97.0 0.0013 2.8E-08 67.9 6.9 68 561-628 3-84 (198)
426 PF00437 T2SE: Type II/IV secr 97.0 0.0011 2.5E-08 71.5 6.8 97 521-628 100-207 (270)
427 PRK14954 DNA polymerase III su 97.0 0.011 2.4E-07 71.0 15.7 88 253-349 109-200 (620)
428 PRK14974 cell division protein 97.0 0.0071 1.5E-07 67.5 13.1 74 558-631 139-235 (336)
429 PF00448 SRP54: SRP54-type pro 97.0 0.0037 8E-08 64.5 10.1 72 559-630 1-95 (196)
430 PRK14722 flhF flagellar biosyn 97.0 0.0043 9.4E-08 70.0 11.4 114 557-685 135-269 (374)
431 PF13604 AAA_30: AAA domain; P 97.0 0.0088 1.9E-07 61.7 12.9 35 559-593 18-55 (196)
432 TIGR00416 sms DNA repair prote 97.0 0.0043 9.4E-08 72.1 11.6 79 554-632 89-184 (454)
433 PRK13947 shikimate kinase; Pro 97.0 0.00067 1.4E-08 67.8 4.2 31 561-591 3-33 (171)
434 PRK04296 thymidine kinase; Pro 97.0 0.0037 8.1E-08 64.1 9.8 70 561-630 4-90 (190)
435 PRK09111 DNA polymerase III su 97.0 0.012 2.5E-07 70.7 15.1 72 269-349 134-205 (598)
436 PRK03839 putative kinase; Prov 97.0 0.00064 1.4E-08 68.8 3.9 31 561-591 2-32 (180)
437 PHA02774 E1; Provisional 96.9 0.0035 7.6E-08 73.5 10.1 34 559-592 434-468 (613)
438 PF05707 Zot: Zonular occluden 96.9 0.00077 1.7E-08 69.2 4.2 120 562-691 3-143 (193)
439 COG4088 Predicted nucleotide k 96.9 0.0073 1.6E-07 61.9 11.0 24 561-584 3-26 (261)
440 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0079 1.7E-07 63.8 12.1 41 554-594 16-59 (237)
441 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0042 9E-08 65.4 9.9 41 554-594 14-63 (235)
442 PF06745 KaiC: KaiC; InterPro 96.9 0.0045 9.8E-08 64.9 9.9 77 554-630 14-127 (226)
443 PRK08451 DNA polymerase III su 96.9 0.03 6.4E-07 66.1 17.5 72 269-349 119-190 (535)
444 cd00464 SK Shikimate kinase (S 96.9 0.00085 1.8E-08 65.5 4.0 31 561-591 1-31 (154)
445 PRK00625 shikimate kinase; Pro 96.9 0.00087 1.9E-08 67.8 4.1 31 561-591 2-32 (173)
446 TIGR02858 spore_III_AA stage I 96.9 0.002 4.3E-08 69.8 7.0 69 560-628 112-204 (270)
447 TIGR01420 pilT_fam pilus retra 96.9 0.0016 3.4E-08 73.1 6.4 71 558-628 121-205 (343)
448 PHA02244 ATPase-like protein 96.9 0.016 3.4E-07 65.1 14.0 36 106-141 116-151 (383)
449 PRK11889 flhF flagellar biosyn 96.9 0.016 3.5E-07 65.4 14.1 96 531-630 217-332 (436)
450 COG3854 SpoIIIAA ncharacterize 96.8 0.0027 6E-08 65.9 7.3 72 559-630 137-230 (308)
451 PRK13531 regulatory ATPase Rav 96.8 0.016 3.4E-07 67.2 14.1 29 107-135 37-65 (498)
452 PRK13695 putative NTPase; Prov 96.8 0.0051 1.1E-07 61.9 9.0 23 561-583 2-24 (174)
453 TIGR02442 Cob-chelat-sub cobal 96.8 0.035 7.6E-07 67.4 17.7 75 267-348 126-214 (633)
454 PRK05800 cobU adenosylcobinami 96.8 0.0095 2.1E-07 60.1 10.8 71 561-632 3-90 (170)
455 PRK07952 DNA replication prote 96.8 0.0065 1.4E-07 64.8 9.9 88 51-149 52-142 (244)
456 PRK14532 adenylate kinase; Pro 96.8 0.0011 2.5E-08 67.3 4.1 36 561-598 2-37 (188)
457 PRK10536 hypothetical protein; 96.8 0.013 2.8E-07 62.7 12.1 54 526-594 56-113 (262)
458 PF13173 AAA_14: AAA domain 96.8 0.0041 8.9E-08 59.4 7.6 65 267-339 61-126 (128)
459 PRK06762 hypothetical protein; 96.8 0.0032 6.9E-08 62.7 7.0 37 560-596 3-39 (166)
460 PRK13949 shikimate kinase; Pro 96.8 0.0012 2.5E-08 66.5 3.9 32 560-591 2-33 (169)
461 cd00544 CobU Adenosylcobinamid 96.8 0.013 2.8E-07 59.0 11.3 69 562-632 2-87 (169)
462 PRK14950 DNA polymerase III su 96.7 0.021 4.5E-07 68.7 15.0 74 267-349 120-193 (585)
463 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0013 2.7E-08 66.5 4.0 34 562-597 2-35 (183)
464 CHL00081 chlI Mg-protoporyphyr 96.7 0.039 8.4E-07 61.9 15.8 78 266-348 143-232 (350)
465 KOG3347 Predicted nucleotide k 96.7 0.0013 2.8E-08 64.0 3.5 33 559-591 7-39 (176)
466 TIGR02533 type_II_gspE general 96.7 0.0058 1.2E-07 71.6 9.7 94 521-628 218-321 (486)
467 cd03283 ABC_MutS-like MutS-lik 96.7 0.013 2.8E-07 60.6 11.2 72 558-629 24-116 (199)
468 PF07693 KAP_NTPase: KAP famil 96.7 0.072 1.6E-06 58.8 17.9 36 557-592 18-59 (325)
469 PF05621 TniB: Bacterial TniB 96.7 0.021 4.6E-07 62.3 13.0 141 254-427 135-284 (302)
470 PRK10436 hypothetical protein; 96.7 0.0061 1.3E-07 70.8 9.6 94 521-628 194-297 (462)
471 PRK09376 rho transcription ter 96.7 0.0033 7.1E-08 70.8 7.0 25 560-584 170-194 (416)
472 PRK13900 type IV secretion sys 96.7 0.004 8.6E-08 69.5 7.7 71 558-628 159-245 (332)
473 TIGR02782 TrbB_P P-type conjug 96.7 0.0053 1.1E-07 67.6 8.5 70 559-628 132-214 (299)
474 COG0703 AroK Shikimate kinase 96.7 0.0014 2.9E-08 65.8 3.5 32 560-591 3-34 (172)
475 PRK13948 shikimate kinase; Pro 96.7 0.0019 4.1E-08 65.9 4.7 35 557-591 8-42 (182)
476 PRK06217 hypothetical protein; 96.7 0.0016 3.4E-08 66.2 4.1 31 561-591 3-33 (183)
477 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.016 3.6E-07 62.3 12.0 40 554-593 31-73 (259)
478 cd02020 CMPK Cytidine monophos 96.6 0.0016 3.5E-08 62.8 3.8 30 562-591 2-31 (147)
479 COG2804 PulE Type II secretory 96.6 0.0058 1.2E-07 70.4 8.7 99 516-628 229-337 (500)
480 cd00984 DnaB_C DnaB helicase C 96.6 0.019 4E-07 60.7 12.2 39 555-593 9-51 (242)
481 PF13479 AAA_24: AAA domain 96.6 0.0091 2E-07 62.4 9.6 68 559-630 3-80 (213)
482 PRK14531 adenylate kinase; Pro 96.6 0.0019 4.1E-08 65.7 4.3 35 560-596 3-37 (183)
483 COG0466 Lon ATP-dependent Lon 96.6 0.0085 1.8E-07 71.2 10.1 111 252-398 407-535 (782)
484 PRK14971 DNA polymerase III su 96.6 0.025 5.4E-07 68.2 14.3 87 253-349 103-194 (614)
485 COG5245 DYN1 Dynein, heavy cha 96.6 0.011 2.5E-07 74.1 11.2 140 557-709 1492-1660(3164)
486 COG1066 Sms Predicted ATP-depe 96.6 0.017 3.6E-07 64.9 11.8 100 554-653 88-205 (456)
487 cd02021 GntK Gluconate kinase 96.6 0.0018 3.9E-08 63.2 3.9 28 562-589 2-29 (150)
488 cd00227 CPT Chloramphenicol (C 96.6 0.0017 3.7E-08 65.4 3.7 35 560-594 3-37 (175)
489 PRK14530 adenylate kinase; Pro 96.6 0.0021 4.5E-08 67.1 4.5 30 561-590 5-34 (215)
490 cd01428 ADK Adenylate kinase ( 96.6 0.0018 4E-08 65.8 3.9 33 562-596 2-34 (194)
491 PF08433 KTI12: Chromatin asso 96.6 0.012 2.7E-07 63.7 10.4 69 562-630 4-82 (270)
492 TIGR02538 type_IV_pilB type IV 96.6 0.0073 1.6E-07 72.2 9.3 94 521-628 292-395 (564)
493 TIGR03499 FlhF flagellar biosy 96.6 0.011 2.3E-07 64.6 9.9 37 558-594 193-234 (282)
494 PF12780 AAA_8: P-loop contain 96.6 0.067 1.5E-06 58.0 15.8 90 526-628 9-99 (268)
495 PRK10416 signal recognition pa 96.5 0.052 1.1E-06 60.3 15.2 36 558-593 113-151 (318)
496 KOG2543 Origin recognition com 96.5 0.027 5.8E-07 62.6 12.6 59 527-595 8-66 (438)
497 TIGR02031 BchD-ChlD magnesium 96.5 0.054 1.2E-06 65.1 16.5 151 267-433 84-259 (589)
498 cd01122 GP4d_helicase GP4d_hel 96.5 0.019 4E-07 61.9 11.5 39 555-593 26-68 (271)
499 TIGR00064 ftsY signal recognit 96.5 0.06 1.3E-06 58.5 15.4 37 557-593 70-109 (272)
500 PRK12724 flagellar biosynthesi 96.5 0.037 7.9E-07 63.3 14.1 70 559-628 223-309 (432)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-67 Score=584.15 Aligned_cols=537 Identities=29% Similarity=0.438 Sum_probs=414.0
Q ss_pred CCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEee
Q 003231 62 DGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLD 141 (837)
Q Consensus 62 ~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld 141 (837)
.+.+.+|+|.+|++. +.|-..|.+-+. |++||+...|+-- -.+++|||.||++|+++|||.|+|.+.|++|+-+-
T Consensus 181 ~~~~snv~f~diGG~--d~~~~el~~li~-~i~~Pe~~~~lGv--~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGL--DKTLAELCELII-HIKHPEVFSSLGV--RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred CCCCCCcchhhccCh--HHHHHHHHHHHH-HhcCchhHhhcCC--CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence 355668999999998 888888877654 6999999777643 46799999999999999999999999999999988
Q ss_pred ccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCC
Q 003231 142 VNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNA 221 (837)
Q Consensus 142 ~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (837)
...+-..+ .|+|
T Consensus 256 ApeivSGv---SGES----------------------------------------------------------------- 267 (802)
T KOG0733|consen 256 APEIVSGV---SGES----------------------------------------------------------------- 267 (802)
T ss_pred chhhhccc---Cccc-----------------------------------------------------------------
Confidence 76664322 1221
Q ss_pred CCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHH
Q 003231 222 SDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKL 293 (837)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~ 293 (837)
.--|..||.=+.+. .||||||||||-+=-.+ .+....|-.-
T Consensus 268 ----------------------------EkkiRelF~~A~~~---aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~ 316 (802)
T KOG0733|consen 268 ----------------------------EKKIRELFDQAKSN---APCIVFIDEIDAITPKREEAQREMERRIVAQLLTS 316 (802)
T ss_pred ----------------------------HHHHHHHHHHHhcc---CCeEEEeecccccccchhhHHHHHHHHHHHHHHHh
Confidence 12566677777766 99999999999944222 1233333222
Q ss_pred HHhcc------CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 003231 294 LKKLS------GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIA 365 (837)
Q Consensus 294 l~~l~------g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~ 365 (837)
++.|+ .+|+|||+ ||+++.+|.||.| ||...|.++.|++.+|..||+++... +.+..+++.-+
T Consensus 317 mD~l~~~~~~g~~VlVIgA-----TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~----lrl~g~~d~~q 387 (802)
T KOG0733|consen 317 MDELSNEKTKGDPVLVIGA-----TNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG----LRLSGDFDFKQ 387 (802)
T ss_pred hhcccccccCCCCeEEEec-----CCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh----CCCCCCcCHHH
Confidence 33222 47999998 9999999999998 99999999999999999999987543 33445666666
Q ss_pred HHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhh---------------------------------------
Q 003231 366 EVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLM--------------------------------------- 406 (837)
Q Consensus 366 ~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~--------------------------------------- 406 (837)
....|.|+.+.||..+|.. ++. -|+..++.
T Consensus 388 lA~lTPGfVGADL~AL~~~------Aa~-----vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~l 456 (802)
T KOG0733|consen 388 LAKLTPGFVGADLMALCRE------AAF-----VAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLEL 456 (802)
T ss_pred HHhcCCCccchhHHHHHHH------HHH-----HHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccH
Confidence 6788889999998888743 111 12222222
Q ss_pred ---------cCCCcccc--CCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhhccCCCCCCCccc
Q 003231 407 ---------DNEDPEYR--NGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAKTESKENPASESR 475 (837)
Q Consensus 407 ---------~~~~~~~~--~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (837)
++.+|--. .+.|.|..+||+.|+..+|+.. |
T Consensus 457 d~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSa-------k------------------------------- 498 (802)
T KOG0733|consen 457 DRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSA-------K------------------------------- 498 (802)
T ss_pred HHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcch-------h-------------------------------
Confidence 11111100 1223344444444443322200 0
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCC
Q 003231 476 SEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGL 555 (837)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~ 555 (837)
|..+ ..-|.|+|+||+|+++++.+|..+|.+|.++|++|+..|
T Consensus 499 -----------------------------------REGF--~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lG 541 (802)
T KOG0733|consen 499 -----------------------------------REGF--ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALG 541 (802)
T ss_pred -----------------------------------cccc--eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhC
Confidence 0000 012468999999999999999999999999999999999
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCC
Q 003231 556 LKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 556 ~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~ 635 (837)
+.++.|||||||||||||.||+|+|++.|++|+.|.+.+|.++|+|+++..++++|..|+.++|||||+||||.|++.|+
T Consensus 542 i~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~ 621 (802)
T KOG0733|consen 542 IDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRS 621 (802)
T ss_pred CCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHh--hcC
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLA--KEK 711 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~--~~~ 711 (837)
..+ .....+++|+|+.+|||+.... .|.||++||+|+.+||+++| |||..+++++|+.++|..||+.+.+ +.+
T Consensus 622 ~~~-s~~s~RvvNqLLtElDGl~~R~--gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~p 698 (802)
T KOG0733|consen 622 DEG-SSVSSRVVNQLLTELDGLEERR--GVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPP 698 (802)
T ss_pred CCC-chhHHHHHHHHHHHhccccccc--ceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCC
Confidence 754 6778899999999999996554 49999999999999999999 9999999999999999999999999 445
Q ss_pred C-ChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCC
Q 003231 712 V-EDLDFKELAAMTE--GYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRP 788 (837)
Q Consensus 712 ~-~d~dl~~LA~~t~--G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 788 (837)
+ +|+++++||..+. ||||+||..||++|++.|+++.+...... .++...... ...
T Consensus 699 l~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~---------------------~~~~~~~~~-~~~ 756 (802)
T KOG0733|consen 699 LSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSS---------------------EDDVTVRSS-TII 756 (802)
T ss_pred CCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcccc---------------------Ccccceeee-eee
Confidence 5 8999999999876 99999999999999999999876522100 000000111 234
Q ss_pred CCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcC
Q 003231 789 LNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGE 824 (837)
Q Consensus 789 lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~ 824 (837)
+++.||++|+++++||+.... ..-+-.-+..+|+
T Consensus 757 ~t~~hF~eA~~~i~pSv~~~d--r~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 757 VTYKHFEEAFQRIRPSVSERD--RKKYDRLNKSRSL 790 (802)
T ss_pred ecHHHHHHHHHhcCCCccHHH--HHHHHHHhhhhcc
Confidence 799999999999999998432 2233344444444
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-61 Score=542.67 Aligned_cols=487 Identities=30% Similarity=0.464 Sum_probs=396.3
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 66 IKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 66 ~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
..++ +.+.+. ..--..+.+.+..+|.++...+... .+.++++||+||+++++++|++|.|++.+|.|+.+....+
T Consensus 180 ~~~~-~~~gg~--~~~~~~i~e~v~~pl~~~~~~~s~g--~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~pel 254 (693)
T KOG0730|consen 180 PEVG-DDIGGL--KRQLSVIRELVELPLRHPALFKSIG--IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPEL 254 (693)
T ss_pred cccc-cccchh--HHHHHHHHHHHHhhhcchhhhhhcC--CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHH
Confidence 3455 666665 5566788899999999998855443 3789999999999999999999999999999999999877
Q ss_pred chhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcc
Q 003231 146 SLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMS 225 (837)
Q Consensus 146 ~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (837)
..++ .|++.+
T Consensus 255 i~k~---~gEte~------------------------------------------------------------------- 264 (693)
T KOG0730|consen 255 ISKF---PGETES------------------------------------------------------------------- 264 (693)
T ss_pred HHhc---ccchHH-------------------------------------------------------------------
Confidence 5433 344322
Q ss_pred cccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCC-cEEEEEccchhHhhhc-------HHHHHHHHHHHHhc
Q 003231 226 SISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETS-SVILYLRDVDKLLFQS-------QRFYNLLDKLLKKL 297 (837)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~-p~Ilfi~di~~~l~~~-------~~~~~~lk~~l~~l 297 (837)
.+...|+.+. +.+ |.|+||||+|.+.-++ .+....+-.+++-+
T Consensus 265 --------------------------~LR~~f~~a~---k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~ 315 (693)
T KOG0730|consen 265 --------------------------NLRKAFAEAL---KFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGL 315 (693)
T ss_pred --------------------------HHHHHHHHHh---ccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhC
Confidence 1222344333 347 9999999999944211 23333333344444
Q ss_pred c--CCEEEEecccccCCCCCCchhHHHHc-cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCC
Q 003231 298 S--GSVLVLGSRMLEPEDDCRDVDERLTI-LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLE 374 (837)
Q Consensus 298 ~--g~v~iiGs~~~~~~~~~~~~d~al~r-rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~ 374 (837)
. +.++||++ +|++..+|+++.| ||+..++|+.|+..+|+.|++.+.+.+.- .+.-...+....++|+.
T Consensus 316 ~~~~~vivl~a-----tnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~----~~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 316 KPDAKVIVLAA-----TNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNL----LSDVDLEDIAVSTHGYV 386 (693)
T ss_pred cCcCcEEEEEe-----cCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCC----cchhhHHHHHHHccchh
Confidence 3 89999998 9999999999998 99999999999999999999987654332 23344455556666666
Q ss_pred hhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccc
Q 003231 375 CDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKE 454 (837)
Q Consensus 375 ~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (837)
+.||..+|.. |.-.++.+ ++++|..|+.-.++
T Consensus 387 GaDL~~l~~e---------------a~~~~~r~-------------~~~~~~~A~~~i~p-------------------- 418 (693)
T KOG0730|consen 387 GADLAALCRE---------------ASLQATRR-------------TLEIFQEALMGIRP-------------------- 418 (693)
T ss_pred HHHHHHHHHH---------------HHHHHhhh-------------hHHHHHHHHhcCCc--------------------
Confidence 6666666644 44334322 44677777651111
Q ss_pred cchhhhhhhccCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHH
Q 003231 455 TGEEAVTAKTESKENPASESRSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIK 534 (837)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk 534 (837)
. .+|.-+ ..-+.++|+||+|++++|
T Consensus 419 ------------------------------------------------s-----a~Re~~--ve~p~v~W~dIGGlE~lK 443 (693)
T KOG0730|consen 419 ------------------------------------------------S-----ALREIL--VEMPNVSWDDIGGLEELK 443 (693)
T ss_pred ------------------------------------------------h-----hhhhee--ccCCCCChhhccCHHHHH
Confidence 0 001111 223467999999999999
Q ss_pred HHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHH
Q 003231 535 ESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLA 614 (837)
Q Consensus 535 ~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A 614 (837)
..|++.|.+|+++|+.|...++.|+++||||||||||||++||++|++++++|+.+.+.++.++|+|++|..++.+|+.|
T Consensus 444 ~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kA 523 (693)
T KOG0730|consen 444 RELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKA 523 (693)
T ss_pred HHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHH--HHHHhhhcC
Q 003231 615 AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVG 692 (837)
Q Consensus 615 ~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~ 692 (837)
+..+|||||+||||.+.+.|++... .+..+++++|+++|||+... ++|+|||+||+|+.+|++++| |||+.|+|+
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVp 600 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVP 600 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeec
Confidence 9999999999999999999975433 88999999999999999554 569999999999999999999 999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccch
Q 003231 693 LPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDA 771 (837)
Q Consensus 693 ~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (837)
+|+.+.|.+||+.++++.++ +++|+..||+.|+||||+||.++|++|+..|+++.++
T Consensus 601 lPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~---------------------- 658 (693)
T KOG0730|consen 601 LPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE---------------------- 658 (693)
T ss_pred CccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc----------------------
Confidence 99999999999999999999 7889999999999999999999999999999987532
Q ss_pred hhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccc
Q 003231 772 SETKEEAKEERVITLRPLNMEDMRQAKNQVAASFAS 807 (837)
Q Consensus 772 ~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~ 807 (837)
...++.++|.+|++.++++...
T Consensus 659 --------------a~~i~~~hf~~al~~~r~s~~~ 680 (693)
T KOG0730|consen 659 --------------ATEITWQHFEEALKAVRPSLTS 680 (693)
T ss_pred --------------cccccHHHHHHHHHhhcccCCH
Confidence 3468899999999999998863
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-57 Score=480.25 Aligned_cols=381 Identities=56% Similarity=0.888 Sum_probs=338.2
Q ss_pred cccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhh
Q 003231 381 ICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAV 460 (837)
Q Consensus 381 ~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (837)
.|..|..+....|+.++.||++||+.+...|.+++ +..++.++++++...++..... .+ .+
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~--~s---------~k------- 64 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE--LS---------LK------- 64 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc--cc---------hh-------
Confidence 56777788889999999999999999988887766 8889999999998766652210 00 00
Q ss_pred hhhccCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHH
Q 003231 461 TAKTESKENPASESRSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQEL 540 (837)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~ 540 (837)
......++++..+.+.+++|.++.++|+||+|++.+++.++++
T Consensus 65 -------------------------------------~~~i~~ne~E~~i~s~~v~p~~I~v~f~DIggLe~v~~~L~e~ 107 (386)
T KOG0737|consen 65 -------------------------------------YRIIQKNEYEKRIASDVVPPSEIGVSFDDIGGLEEVKDALQEL 107 (386)
T ss_pred -------------------------------------hhhhhhhHHHHHhhhcccchhhceeehhhccchHHHHHHHHHH
Confidence 0244688999999999999999999999999999999999999
Q ss_pred HHcccCCchhh-cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCC
Q 003231 541 VMLPLRRPDLF-KGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSP 619 (837)
Q Consensus 541 i~~~l~~~e~~-~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~p 619 (837)
+.+|+++|++| .+...+|++||||+||||||||++|+++|++.|++|+.|+++.+.++|+|+.++.++.+|..|.+.+|
T Consensus 108 VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P 187 (386)
T KOG0737|consen 108 VILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQP 187 (386)
T ss_pred HhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCc
Confidence 99999999999 56778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHH
Q 003231 620 TIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENR 699 (837)
Q Consensus 620 sVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer 699 (837)
+||||||+|.+++.| ...++++...+.++|+.+|||+.+..+.+|+|+|+||+|.++|.+++||++++++++.|+.++|
T Consensus 188 ~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR 266 (386)
T KOG0737|consen 188 SIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQR 266 (386)
T ss_pred ceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhH
Confidence 999999999999999 7789999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhhhHHHH
Q 003231 700 EMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDASETKEEA 778 (837)
Q Consensus 700 ~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 778 (837)
.+||+.+++.+.+ +++|+.++|.+|+||||+||+++|+.|++.++++++++. ..........+.....+..
T Consensus 267 ~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~-~~~~d~d~~~~d~~~~~~~------- 338 (386)
T KOG0737|consen 267 RKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE-TGLLDLDKAIADLKPTQAA------- 338 (386)
T ss_pred HHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc-ccchhhhhhhhhccCCccc-------
Confidence 9999999999999 899999999999999999999999999999999999875 2111111111111111111
Q ss_pred HHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCCCcc
Q 003231 779 KEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSR 828 (837)
Q Consensus 779 ~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~~~r 828 (837)
......||++++||.+|+++|.+++..+.+.+....+|++.||++++|
T Consensus 339 --~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 339 --ASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred --ccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 244668999999999999999999999999999999999999999987
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.4e-55 Score=533.90 Aligned_cols=532 Identities=30% Similarity=0.472 Sum_probs=422.0
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 66 IKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 66 ~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
-+++|+++.++ +..+..|.+.+..+++|+++.+... ...+++|||+||+++++++||||+|++.+++++.++..++
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i 248 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEI 248 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHH
Confidence 57999999998 9999999999999999998844332 2567899999999999999999999999999999887776
Q ss_pred chhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcc
Q 003231 146 SLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMS 225 (837)
Q Consensus 146 ~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (837)
..++ +|.
T Consensus 249 ~~~~---~g~---------------------------------------------------------------------- 255 (733)
T TIGR01243 249 MSKY---YGE---------------------------------------------------------------------- 255 (733)
T ss_pred hccc---ccH----------------------------------------------------------------------
Confidence 4322 111
Q ss_pred cccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHHhc
Q 003231 226 SISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLKKL 297 (837)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~~l 297 (837)
..-.+..+|+.+.. ..|.||||||||.+...+ .+..+.|...++.+
T Consensus 256 -----------------------~~~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l 309 (733)
T TIGR01243 256 -----------------------SEERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL 309 (733)
T ss_pred -----------------------HHHHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc
Confidence 11134556665554 489999999999976432 12333344444433
Q ss_pred --cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCC
Q 003231 298 --SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDL 373 (837)
Q Consensus 298 --~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~ 373 (837)
.+.|+|||+ +|++..+|.++.| ||...|+|++|+.++|.+||+.++.. +....+.
T Consensus 310 ~~~~~vivI~a-----tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~----------------~~l~~d~ 368 (733)
T TIGR01243 310 KGRGRVIVIGA-----TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN----------------MPLAEDV 368 (733)
T ss_pred ccCCCEEEEee-----cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC----------------CCCcccc
Confidence 267899998 6778889999998 99999999999999999999964321 1223456
Q ss_pred ChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCC-----Ccc---cc---CCceeecHHhHHHHHHHhhhhhhccccc
Q 003231 374 ECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNE-----DPE---YR---NGKLVISSKSLSHGLSIFQECKRFGKDS 442 (837)
Q Consensus 374 ~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~-----~~~---~~---~~~~~i~~~~~~~~l~~~~~~~~~~~~~ 442 (837)
++..|.+++.+ ++++++..++..|+..++.+.. ++. +. ...+.+++++|..++...++..
T Consensus 369 ~l~~la~~t~G---~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~------ 439 (733)
T TIGR01243 369 DLDKLAEVTHG---FVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA------ 439 (733)
T ss_pred CHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc------
Confidence 77788888888 8888888888888777664321 110 10 1345678888888877322100
Q ss_pred cccccccccccccchhhhhhhccCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCc
Q 003231 443 LKMETNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGV 522 (837)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v 522 (837)
..+.. ...+.+
T Consensus 440 ------------------------------------------------------------~~~~~---------~~~~~~ 450 (733)
T TIGR01243 440 ------------------------------------------------------------IREVL---------VEVPNV 450 (733)
T ss_pred ------------------------------------------------------------cchhh---------cccccc
Confidence 00000 011246
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccc
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGE 602 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~ 602 (837)
+|++|+|++.+++.|.+.+.+|+.+++.|...+.++++++||+||||||||++|+++|.+++.+|+.++++++.++|+|+
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGe 530 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE 530 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCc
Confidence 89999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHH
Q 003231 603 DEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAII 682 (837)
Q Consensus 603 ~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~ 682 (837)
++..++.+|..|+..+||||||||||.+++.+..........+++++|+..|+++.. ..+++||+|||+|+.+|++++
T Consensus 531 se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~all 608 (733)
T TIGR01243 531 SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALL 608 (733)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhc
Confidence 999999999999999999999999999998886655556778899999999999754 346999999999999999999
Q ss_pred H--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 003231 683 R--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKK 759 (837)
Q Consensus 683 r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~ 759 (837)
| ||+..++++.|+.++|.+||+.++++..+ .++++..||..++||+|+||.++|++|++.++++.+.........
T Consensus 609 RpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~-- 686 (733)
T TIGR01243 609 RPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE-- 686 (733)
T ss_pred CCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh--
Confidence 8 99999999999999999999999988877 788999999999999999999999999999999875532211100
Q ss_pred HHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhc
Q 003231 760 KREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYG 823 (837)
Q Consensus 760 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG 823 (837)
. .........+++++||..|+++++||+..+ -...+.+|...+|
T Consensus 687 ---~---------------~~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~~~~~~~~~~ 730 (733)
T TIGR01243 687 ---V---------------GEEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLRYERLAKELK 730 (733)
T ss_pred ---c---------------ccccccccCcccHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhc
Confidence 0 000011235799999999999999999765 2567889998876
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-54 Score=487.40 Aligned_cols=494 Identities=28% Similarity=0.453 Sum_probs=390.7
Q ss_pred cCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccC
Q 003231 105 LSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKL 184 (837)
Q Consensus 105 l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (837)
+.....-+||.||+.+++.++++|.|+++|+.++-+|.+.|...- .+.+++
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s--------------~~~~et--------------- 477 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAES--------------ASHTET--------------- 477 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcc--------------cchhHH---------------
Confidence 445677899999999999999999999999999999999985300 001111
Q ss_pred CCCccccccccccCCccccccccccCCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhh
Q 003231 185 PPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSIT 264 (837)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~ 264 (837)
-.++.|.=+..
T Consensus 478 -------------------------------------------------------------------kl~~~f~~a~~-- 488 (953)
T KOG0736|consen 478 -------------------------------------------------------------------KLQAIFSRARR-- 488 (953)
T ss_pred -------------------------------------------------------------------HHHHHHHHHhh--
Confidence 22334444444
Q ss_pred cCCcEEEEEccchhHhhhc-----HHHHHHHHHHHH----h-ccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCC
Q 003231 265 ETSSVILYLRDVDKLLFQS-----QRFYNLLDKLLK----K-LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKL 334 (837)
Q Consensus 265 ~~~p~Ilfi~di~~~l~~~-----~~~~~~lk~~l~----~-l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~ 334 (837)
.+|+|||+.+.|-+-..+ -+.+..++-+++ + --+.+.++|+ ++...++...+.+.|...|.++.
T Consensus 489 -~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t-----~~s~~~lp~~i~~~f~~ei~~~~ 562 (953)
T KOG0736|consen 489 -CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVAT-----TSSIEDLPADIQSLFLHEIEVPA 562 (953)
T ss_pred -cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEe-----ccccccCCHHHHHhhhhhccCCC
Confidence 499999999999965332 234444444444 1 1246778887 56667899999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhh--hhcCCCcc
Q 003231 335 PEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHH--LMDNEDPE 412 (837)
Q Consensus 335 P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~--l~~~~~~~ 412 (837)
|++++|++||++++.+- .+....+.-+-+..++|++..||+.+..+ .| .++.-.++.+. +| +....+-+
T Consensus 563 lse~qRl~iLq~y~~~~----~~n~~v~~k~~a~~t~gfs~~~L~~l~~~---~s-~~~~~~i~~~~-l~g~~~~~~~~~ 633 (953)
T KOG0736|consen 563 LSEEQRLEILQWYLNHL----PLNQDVNLKQLARKTSGFSFGDLEALVAH---SS-LAAKTRIKNKG-LAGGLQEEDEGE 633 (953)
T ss_pred CCHHHHHHHHHHHHhcc----ccchHHHHHHHHHhcCCCCHHHHHHHhcC---ch-HHHHHHHHhhc-ccccchhccccc
Confidence 99999999999976432 23334445566899999999999999988 44 44444444443 21 11111111
Q ss_pred ccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhhccCCCCCCCcccccccccccccccCCCCC
Q 003231 413 YRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKKDSENP 492 (837)
Q Consensus 413 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (837)
....-..++++||.++++.+|..+
T Consensus 634 ~~~~~~~l~~edf~kals~~~~~f-------------------------------------------------------- 657 (953)
T KOG0736|consen 634 LCAAGFLLTEEDFDKALSRLQKEF-------------------------------------------------------- 657 (953)
T ss_pred cccccceecHHHHHHHHHHHHHhh--------------------------------------------------------
Confidence 222235699999999999665422
Q ss_pred CCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChH
Q 003231 493 PPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGK 572 (837)
Q Consensus 493 ~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGK 572 (837)
.. .+-.|.-|+|+|+||+|++++|..|.+.|.+|+++|++|..+. ++..||||||||||||
T Consensus 658 --------------s~----aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssgl-rkRSGILLYGPPGTGK 718 (953)
T KOG0736|consen 658 --------------SD----AIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGL-RKRSGILLYGPPGTGK 718 (953)
T ss_pred --------------hh----hcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccc-cccceeEEECCCCCch
Confidence 01 1112334578999999999999999999999999999998754 6678999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcch-HHHHHHHHHHHH
Q 003231 573 TMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGE-HEAMRKIKNEFM 651 (837)
Q Consensus 573 T~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~-~~~~~~i~~~Ll 651 (837)
|.+|||+|.++...|+.|.+.++.++|+|++|.++|++|+.|+..+|||||+||+|++.|.|+..++ ...+.|++.+|+
T Consensus 719 TLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLL 798 (953)
T KOG0736|consen 719 TLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLL 798 (953)
T ss_pred HHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987654 458899999999
Q ss_pred HhhccccccCCceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCC-CHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcC-C
Q 003231 652 THWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLP-SAENREMILKTLLAKEKV-EDLDFKELAAMTE-G 726 (837)
Q Consensus 652 ~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P-~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~-G 726 (837)
.+||++...+.+.|+||++||+|+.|||+++| |||+.++++.+ +.+.+..||+.+.++..+ .++++.++|+.++ .
T Consensus 799 AELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 799 AELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPN 878 (953)
T ss_pred HHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcC
Confidence 99999987677889999999999999999999 99999999887 467889999999999999 8999999999997 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccc
Q 003231 727 YSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFA 806 (837)
Q Consensus 727 ~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~ 806 (837)
|||+|+..||..|++.|++|.+........ +. ++......-++|+||.+|.++++||.+
T Consensus 879 ~TGADlYsLCSdA~l~AikR~i~~ie~g~~-----------~~----------~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 879 MTGADLYSLCSDAMLAAIKRTIHDIESGTI-----------SE----------EEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhccc-----------cc----------cccCCceEEEEHHHHHHHHHhcCCccc
Confidence 999999999999999999997655432211 00 011123346899999999999999997
Q ss_pred c
Q 003231 807 S 807 (837)
Q Consensus 807 ~ 807 (837)
.
T Consensus 938 ~ 938 (953)
T KOG0736|consen 938 E 938 (953)
T ss_pred H
Confidence 4
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-48 Score=431.33 Aligned_cols=312 Identities=34% Similarity=0.598 Sum_probs=267.8
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW 599 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~ 599 (837)
..++|.+|+|++....+|.+++.. +++|+.|...|+.|++|+|||||||||||+||+++|.+++.||+.|++.++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 367999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc--CCceEEEEEecCCCCCC
Q 003231 600 FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR--NGERILVLAATNRPFDL 677 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~--~~~~vlVIaTTN~~~~L 677 (837)
.|+++++++.+|+.|+...|||+||||||.+.+.|.. .+.+..++++.+|+..||++... .+..|+||++||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999999987 57788899999999999998654 34789999999999999
Q ss_pred cHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 003231 678 DEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK- 753 (837)
Q Consensus 678 d~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~- 753 (837)
||+|+| ||++.|.+..|+...|.+||+.++++..+ .++++..||.+|.||.|+||.+||.+|+..|++|++.+...
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 99999999999999999999999999888 78999999999999999999999999999999999875441
Q ss_pred -HhH---HH----HHHHHH--hh---ccc---chhhhHHHHHH-------hhhhccCCCCHHHHHHHHHHhhhccccccc
Q 003231 754 -KDM---EK----KKREEA--AK---SSE---DASETKEEAKE-------ERVITLRPLNMEDMRQAKNQVAASFASEGS 810 (837)
Q Consensus 754 -~~~---~~----~~~~~~--~~---~~~---~~~~~~~e~~~-------~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~ 810 (837)
... +. ....+. -+ ... ......+.... .+....-.|+++||..|+..+|||..++|+
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 000 00 000000 00 000 00000000000 022334568999999999999999999999
Q ss_pred chhhhHHHHHhhcCCCccccccc
Q 003231 811 VMNELKQWNDLYGEGGSRKKEQL 833 (837)
Q Consensus 811 ~~~~~~~W~digG~~~~r~~~~~ 833 (837)
..+|.++|+||||+..+|.+.+.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~ 525 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNM 525 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHH
Confidence 99999999999999999988654
No 7
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-47 Score=442.99 Aligned_cols=427 Identities=19% Similarity=0.239 Sum_probs=313.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhh-----h-cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHcc
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLF-----Q-SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTIL 325 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~-----~-~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rr 325 (837)
+=++|+.|+.++.+..|+||||||||+++. | ++|+.|+|||+|++ |.+.||||||++||++++++|.||.||
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~~EYRk~iEKD~AL~RR 324 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYRKYIEKDAALERR 324 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccHHHHHHHhhhchHHHhc
Confidence 446799999999999999999999999772 1 37899999999998 999999999999999999999999999
Q ss_pred CCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhh
Q 003231 326 FPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHL 405 (837)
Q Consensus 326 F~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l 405 (837)
|+ +|.|.+|+.++++.||+++-++|..+|+++...+.+ ..|+.|+.+|++||+|||++||.||++|++..+
T Consensus 325 FQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al--------~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 325 FQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEAL--------VAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred Cc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHH--------HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence 98 999999999999999999655555555544444444 499999999999999999999999999999999
Q ss_pred hcCCCccccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhh--ccC-CCCCCCcccccccccc
Q 003231 406 MDNEDPEYRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAK--TES-KENPASESRSEMEKSV 482 (837)
Q Consensus 406 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 482 (837)
... .|. ..+.+++-+..++..+ +.++.+..+...+..++.....+ ... +..... ..++.+...
T Consensus 396 ~~~-~p~--------~l~~~~~~~~~l~~e~----~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~ 461 (786)
T COG0542 396 EID-KPE--------ELDELERELAQLEIEK----EALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAE 461 (786)
T ss_pred ccc-CCc--------chhHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHH
Confidence 876 554 2234444444333211 11111111111111111000000 000 000000 022223334
Q ss_pred cccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHc---ccCCchhhcCCCCCCC
Q 003231 483 PVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVML---PLRRPDLFKGGLLKPC 559 (837)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~---~l~~~e~~~~~~~~p~ 559 (837)
.+...+.+|.......+......++..+... |+||++++..+..+|.. .+..|. +|.
T Consensus 462 vv~~~TgIPv~~l~~~e~~kll~le~~L~~r-------------ViGQd~AV~avs~aIrraRaGL~dp~-------rPi 521 (786)
T COG0542 462 VVARWTGIPVAKLLEDEKEKLLNLERRLKKR-------------VIGQDEAVEAVSDAIRRARAGLGDPN-------RPI 521 (786)
T ss_pred HHHHHHCCChhhhchhhHHHHHHHHHHHhcc-------------eeChHHHHHHHHHHHHHHhcCCCCCC-------CCc
Confidence 4455566666655555555666788888877 89999999999999865 233333 788
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccccc------------cccccHHHHHHHHHHHHhcCCeEEEe
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAG---ASFINVSMSTITSK------------WFGEDEKNVRALFTLAAKVSPTIIFV 624 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~~s~l~s~------------~~G~~e~~l~~lf~~A~~~~psVLfI 624 (837)
.++||.||+|+|||.||+++|..+. ..+++++||+++.+ |+|..+.. .+.+..++.|+|||++
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLl 599 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILL 599 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEe
Confidence 8999999999999999999999995 89999999999765 67776644 4788888999999999
Q ss_pred cccccccCCCCCcchHHHHHHHHHHHHHhhccccccCC-------ceEEEEEecCCC-----------------------
Q 003231 625 DEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNG-------ERILVLAATNRP----------------------- 674 (837)
Q Consensus 625 DEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-------~~vlVIaTTN~~----------------------- 674 (837)
||||+.++ ++++.|++.+|....+++ .+.+||+|||--
T Consensus 600 DEIEKAHp------------dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v 667 (786)
T COG0542 600 DEIEKAHP------------DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAV 667 (786)
T ss_pred chhhhcCH------------HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHH
Confidence 99998765 899999999998877665 368999999862
Q ss_pred -----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc-------CC----ChhhHHHHHHHcC--CCCHHHHHHHH
Q 003231 675 -----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE-------KV----EDLDFKELAAMTE--GYSGSDLKNLC 736 (837)
Q Consensus 675 -----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~-------~~----~d~dl~~LA~~t~--G~sg~DL~~L~ 736 (837)
..+.|+|++|++.+|.|...+.+...+|+...+... ++ ++...+.|++..- .|-++-|+.++
T Consensus 668 ~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~I 747 (786)
T COG0542 668 MEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAI 747 (786)
T ss_pred HHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHH
Confidence 134799999999999999999999999988776542 22 4555666666543 34444444443
Q ss_pred H
Q 003231 737 V 737 (837)
Q Consensus 737 ~ 737 (837)
+
T Consensus 748 q 748 (786)
T COG0542 748 Q 748 (786)
T ss_pred H
Confidence 3
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-46 Score=399.24 Aligned_cols=295 Identities=39% Similarity=0.692 Sum_probs=260.4
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
++.+.+...++ .+.+.+.|+||.|+.++|+.|+++|.+|+..|+.|++. .+|-++||++||||||||+||+|+|.+++
T Consensus 193 ~Lve~lerdIl-~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 193 DLVEALERDIL-QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HHHHHHHHHHh-ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 45555554544 44567999999999999999999999999999999875 48999999999999999999999999999
Q ss_pred CcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCC--
Q 003231 585 ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNG-- 662 (837)
Q Consensus 585 ~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-- 662 (837)
..|+.|+.+.+.++|-|++++.++-+|+.|+.++|++|||||||.|+.+|++.++|++.+++.++|+.+|||......
T Consensus 271 tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 271 TTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred CeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854322
Q ss_pred ceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 663 ERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 663 ~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
..|+|+|+||-||++|++++|||..+|++|+|+.+.|..+++..++.... ++++++.|++.++||||+||.++|++|++
T Consensus 351 k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm 430 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASM 430 (491)
T ss_pred eeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999998877 89999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHh
Q 003231 742 RPVRELIQEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDL 821 (837)
Q Consensus 742 ~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~di 821 (837)
.++||.+.......+.... .+... -|++++||+.|+.+++||+... .+.-+.+|.+-
T Consensus 431 ~~mRR~i~g~~~~ei~~la--------------------kE~~~-~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~e 487 (491)
T KOG0738|consen 431 MAMRRKIAGLTPREIRQLA--------------------KEEPK-MPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDE 487 (491)
T ss_pred HHHHHHHhcCCcHHhhhhh--------------------hhccc-cccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHH
Confidence 9999987654322211000 01122 6899999999999999999743 36778899999
Q ss_pred hcC
Q 003231 822 YGE 824 (837)
Q Consensus 822 gG~ 824 (837)
||-
T Consensus 488 fGS 490 (491)
T KOG0738|consen 488 FGS 490 (491)
T ss_pred hcC
Confidence 984
No 9
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-45 Score=410.93 Aligned_cols=393 Identities=29% Similarity=0.456 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------------HHHHHHHHHHHHhccCCEEEEecccccCCCCCCc
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------------QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRD 317 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------------~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~ 317 (837)
+++..|.-... .+|.|+++||+|.++.++ ..|.+.+...+.+....|.+|++ .+....
T Consensus 482 ~l~~vfse~~~---~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat-----~qe~qt 553 (952)
T KOG0735|consen 482 FLNNVFSEALW---YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIAT-----GQELQT 553 (952)
T ss_pred HHHHHHHHHHh---hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEe-----chhhhh
Confidence 33444444444 499999999999987633 23665555556665556678987 555555
Q ss_pred hhHHHH--ccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHH
Q 003231 318 VDERLT--ILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEE 395 (837)
Q Consensus 318 ~d~al~--rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~ 395 (837)
+.+-|. ++|+.++.++.|+.++|-.||+... +.|...+ ..+ +..-|+..|-. |..-..+.
T Consensus 554 l~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~---------s~~~~~~----~~~--dLd~ls~~TEG---y~~~DL~i 615 (952)
T KOG0735|consen 554 LNPLLVSPLLFQIVIALPAPAVTRRKEILTTIF---------SKNLSDI----TMD--DLDFLSVKTEG---YLATDLVI 615 (952)
T ss_pred cChhhcCccceEEEEecCCcchhHHHHHHHHHH---------Hhhhhhh----hhH--HHHHHHHhcCC---ccchhHHH
Confidence 666665 5999999999999999999999743 2222111 111 22227777877 77778888
Q ss_pred HHHHHHHhhhhcCCCcccc-CCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhhccCCCCCCCcc
Q 003231 396 IVVSAISHHLMDNEDPEYR-NGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAKTESKENPASES 474 (837)
Q Consensus 396 iv~~a~~~~l~~~~~~~~~-~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (837)
.|+-|+++++... +. ..| .++.++|+++|.-|-+....+..
T Consensus 616 fVeRai~~a~ler----is~~~k-lltke~f~ksL~~F~P~aLR~ik--------------------------------- 657 (952)
T KOG0735|consen 616 FVERAIHEAFLER----ISNGPK-LLTKELFEKSLKDFVPLALRGIK--------------------------------- 657 (952)
T ss_pred HHHHHHHHHHHHH----hccCcc-cchHHHHHHHHHhcChHHhhhcc---------------------------------
Confidence 9999999998211 11 234 79999999999854332211000
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCC
Q 003231 475 RSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGG 554 (837)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~ 554 (837)
-....+..|+||+|+.++++.+.+.+.+|.++|.+|...
T Consensus 658 -----------------------------------------~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~ 696 (952)
T KOG0735|consen 658 -----------------------------------------LVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANC 696 (952)
T ss_pred -----------------------------------------ccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhC
Confidence 000113579999999999999999999999999999999
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCC
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r 634 (837)
.++...|||||||||||||.||-++|..++..||.+.+.++.++|+|.++.++|.+|..|+..+|||||+||+|.+.|+|
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkR 776 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKR 776 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV 712 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~ 712 (837)
+. .......+++|+|+++|||...- ..|.|+|+|.+|+.+||+++| |+|+.++.+.|+..+|.+|++.+......
T Consensus 777 Gh-DsTGVTDRVVNQlLTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~ 853 (952)
T KOG0735|consen 777 GH-DSTGVTDRVVNQLLTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK 853 (952)
T ss_pred CC-CCCCchHHHHHHHHHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC
Confidence 55 34457789999999999998553 459999999999999999999 99999999999999999999998887666
Q ss_pred -ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 003231 713 -EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEER 752 (837)
Q Consensus 713 -~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~ 752 (837)
+++|++.+|.+|+||+|+||..|+..|.+.|+++++.+..
T Consensus 854 ~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 854 DTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred ccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999876553
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-46 Score=394.22 Aligned_cols=247 Identities=41% Similarity=0.681 Sum_probs=230.5
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.|.++|+||+|+++++++|++.+.+|+.+|++|...|+.||+|||||||||||||.||||+|++.++.|+++.+|+|+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
|+|+....++.+|..|+.++||||||||||.+.+.|... +......+++-+|+++|||+... .+|-||++||+++.
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D~ 302 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPDI 302 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCccc
Confidence 999999999999999999999999999999999888654 45566778888999999999554 45999999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
||||++| |||+.|+||+|+.+.|.+||+.+.++.++ .++|++.||..++|+||+||+++|.+|.+.|+|+-
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~------ 376 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER------ 376 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc------
Confidence 9999999 99999999999999999999999999999 88999999999999999999999999999999862
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcc
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASF 805 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~ 805 (837)
...+|++||.+|.++|....
T Consensus 377 --------------------------------R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 377 --------------------------------RDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred --------------------------------cCeecHHHHHHHHHHHHhcc
Confidence 13689999999999886543
No 11
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-44 Score=416.24 Aligned_cols=469 Identities=33% Similarity=0.499 Sum_probs=375.4
Q ss_pred cccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhh
Q 003231 93 LKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLE 172 (837)
Q Consensus 93 L~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~ 172 (837)
+.+++..+.. ....+++++++||+..+++++++++|.. ++.+++++......++
T Consensus 4 ~~~~~~~~~~--~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~----------------------- 57 (494)
T COG0464 4 LKEPELFKKL--GIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKY----------------------- 57 (494)
T ss_pred ccCHHHHHHh--CCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhh-----------------------
Confidence 3444443333 4578899999999999999999999999 6666555554443322
Q ss_pred hhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHH
Q 003231 173 RMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLF 252 (837)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~ 252 (837)
......-
T Consensus 58 -------------------------------------------------------------------------~~~~~~~ 64 (494)
T COG0464 58 -------------------------------------------------------------------------VGESELR 64 (494)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 2222223
Q ss_pred HHHHHHHHHHhhcCCcEEEEEccchhHhhhcHH--------HHHHHHHHHHhc-cCCEEEEecccccCCCCCCchhHHHH
Q 003231 253 LQSLYKVLVSITETSSVILYLRDVDKLLFQSQR--------FYNLLDKLLKKL-SGSVLVLGSRMLEPEDDCRDVDERLT 323 (837)
Q Consensus 253 ~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~--------~~~~lk~~l~~l-~g~v~iiGs~~~~~~~~~~~~d~al~ 323 (837)
...+|+-+... .|.|+|+||+|.+...+.. ....+-.....+ .+.|.++| .+++...+|+++.
T Consensus 65 ~~~~~~~a~~~---~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~-----~~~~~~~~~~a~~ 136 (494)
T COG0464 65 LRELFEEAEKL---APSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIG-----ATNRPDGLDPAKR 136 (494)
T ss_pred HHHHHHHHHHh---CCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEe-----ecCCccccChhHh
Confidence 34455555554 8899999999997744311 122222222221 24466777 4888999999998
Q ss_pred c--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHH
Q 003231 324 I--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAI 401 (837)
Q Consensus 324 r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~ 401 (837)
+ +|...+.+..|+.+.++.|++.+. +.+......++..+.....+ +.++.+..+...+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~ei~~~~~----------------~~~~~~~~~~~~~~a~~~~~---~~~~~~~~l~~~~~ 197 (494)
T COG0464 137 RPGRFDREIEVNLPDEAGRLEILQIHT----------------RLMFLGPPGTGKTLAARTVG---KSGADLGALAKEAA 197 (494)
T ss_pred CccccceeeecCCCCHHHHHHHHHHHH----------------hcCCCcccccHHHHHHhcCC---ccHHHHHHHHHHHH
Confidence 6 999999999999999999999853 22222336788889999999 99999999998888
Q ss_pred HhhhhcCCCccccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhhccCCCCCCCccccccccc
Q 003231 402 SHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAKTESKENPASESRSEMEKS 481 (837)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (837)
..++.+... .....+.++.+++..++..+.+
T Consensus 198 ~~~~~r~~~--~~~~~~~~~~~~~~~~l~~~~~----------------------------------------------- 228 (494)
T COG0464 198 LRELRRAID--LVGEYIGVTEDDFEEALKKVLP----------------------------------------------- 228 (494)
T ss_pred HHHHHhhhc--cCcccccccHHHHHHHHHhcCc-----------------------------------------------
Confidence 888776420 0123456888999998872211
Q ss_pred ccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCce
Q 003231 482 VPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRG 561 (837)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~ 561 (837)
. ..+-...+.++|++++|++++++.+++.+..++.+++.|...+.+++++
T Consensus 229 ---------------------~---------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~g 278 (494)
T COG0464 229 ---------------------S---------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKG 278 (494)
T ss_pred ---------------------c---------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCe
Confidence 0 1111223357999999999999999999999999999999888899999
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHH
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHE 641 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~ 641 (837)
+||+||||||||+||+++|.+++.+|+.+..+++.++|+|+++++++.+|..|++.+||||||||+|++++.|.... ..
T Consensus 279 iLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~ 357 (494)
T COG0464 279 VLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DG 357 (494)
T ss_pred eEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-ch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886542 22
Q ss_pred HHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC---Chhh
Q 003231 642 AMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV---EDLD 716 (837)
Q Consensus 642 ~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~---~d~d 716 (837)
...+++++++..|+++.... +|+||+|||+|+.+|++++| ||+..++|+.|+.++|.+|++.++..... .+++
T Consensus 358 ~~~r~~~~lL~~~d~~e~~~--~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~ 435 (494)
T COG0464 358 SGRRVVGQLLTELDGIEKAE--GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVD 435 (494)
T ss_pred HHHHHHHHHHHHhcCCCccC--ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhh
Confidence 33799999999999985544 49999999999999999999 99999999999999999999999996543 6899
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHH
Q 003231 717 FKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQ 796 (837)
Q Consensus 717 l~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~ 796 (837)
+..+++.++||+|+||..+|++|++.++++.. .++++++||..
T Consensus 436 ~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------------------------------------~~~~~~~~~~~ 478 (494)
T COG0464 436 LEELAEITEGYSGADIAALVREAALEALREAR-------------------------------------RREVTLDDFLD 478 (494)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------------------------------------cCCccHHHHHH
Confidence 99999999999999999999999999998742 35799999999
Q ss_pred HHHHhhhccc
Q 003231 797 AKNQVAASFA 806 (837)
Q Consensus 797 Al~~v~ps~~ 806 (837)
|++++.|+..
T Consensus 479 a~~~~~p~~~ 488 (494)
T COG0464 479 ALKKIKPSVT 488 (494)
T ss_pred HHHhcCCCCC
Confidence 9999999975
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-42 Score=355.08 Aligned_cols=308 Identities=38% Similarity=0.642 Sum_probs=254.5
Q ss_pred ccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 514 VIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 514 ~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
.|....|++.|+|+.|++.+|+.|++++.+|++.|.+|.+.. +|.++|||||||||||+.||+++|.+.+-.|+.|+.+
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS 200 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 200 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH
Confidence 344556789999999999999999999999999999998754 7899999999999999999999999999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC
Q 003231 594 TITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR 673 (837)
Q Consensus 594 ~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~ 673 (837)
+|+++|.|++++.++++|+.|+.+.|+||||||||.+++.|.. ++.++.+++..+|+.+|.+.- .++..|+|+++||-
T Consensus 201 DLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQMqGVG-~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 201 DLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQMQGVG-NDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhhhccc-cCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999998866 578899999999999999974 45567999999999
Q ss_pred CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003231 674 PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEE 751 (837)
Q Consensus 674 ~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~ 751 (837)
||.||.+++|||+.+|++|+|+...|..+++.++...+. .+.|+.+|+.+|+||||+||.-+++.|.+.++|++...-
T Consensus 279 Pw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAt 358 (439)
T KOG0739|consen 279 PWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSAT 358 (439)
T ss_pred chhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhh
Confidence 999999999999999999999999999999999887654 899999999999999999999999999999999875433
Q ss_pred hhHhHHH----HHHHHHhhcc-cchhhhHH---HHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhc
Q 003231 752 RKKDMEK----KKREEAAKSS-EDASETKE---EAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYG 823 (837)
Q Consensus 752 ~~~~~~~----~~~~~~~~~~-~~~~~~~~---e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG 823 (837)
.-++.-. ........+. +......+ -+...+.+-..++||.||.+++.+.+|.+..+. ..-..+|.+-+|
T Consensus 359 hFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~D--l~k~~~Ft~dFG 436 (439)
T KOG0739|consen 359 HFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDD--LLKHEKFTEDFG 436 (439)
T ss_pred hhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhhc
Confidence 2221100 0000000010 00000000 001112344688999999999999999997542 445568888888
Q ss_pred CCC
Q 003231 824 EGG 826 (837)
Q Consensus 824 ~~~ 826 (837)
.+|
T Consensus 437 qEg 439 (439)
T KOG0739|consen 437 QEG 439 (439)
T ss_pred cCC
Confidence 765
No 13
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=8.4e-40 Score=395.41 Aligned_cols=388 Identities=20% Similarity=0.252 Sum_probs=292.6
Q ss_pred HHHHHHHHHhhcCCcEEEEEccchhHhhh------cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC
Q 003231 254 QSLYKVLVSITETSSVILYLRDVDKLLFQ------SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP 327 (837)
Q Consensus 254 ~~L~~v~~~~~~~~p~Ilfi~di~~~l~~------~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~ 327 (837)
++|.+++.++.+.+|+||||||+|.++.. ..+..++|++.|++ |.|+|||+||.++|++.+++|.||.|||+
T Consensus 261 ~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~ 338 (731)
T TIGR02639 261 ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQ 338 (731)
T ss_pred HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCc
Confidence 45777777776678999999999997732 25789999999997 99999999999999999999999999997
Q ss_pred ceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhc
Q 003231 328 YNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMD 407 (837)
Q Consensus 328 ~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~ 407 (837)
+|+|.+|+.+++.+||+++..++..++.+....+.+. .|.+|+..|+.||+||+++|+.++++++..++..
T Consensus 339 -~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~--------~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~ 409 (731)
T TIGR02639 339 -KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALE--------AAVELSARYINDRFLPDKAIDVIDEAGASFRLRP 409 (731)
T ss_pred -eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHH--------HHHHhhhcccccccCCHHHHHHHHHhhhhhhcCc
Confidence 9999999999999999998877776665555555554 7999999999999999999999999998877753
Q ss_pred CCCccccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhhccCCCCCCCccccccccccccccc
Q 003231 408 NEDPEYRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKK 487 (837)
Q Consensus 408 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (837)
.. ..+..|+.+++..+++.+-
T Consensus 410 ~~-----~~~~~v~~~~i~~~i~~~t------------------------------------------------------ 430 (731)
T TIGR02639 410 KA-----KKKANVSVKDIENVVAKMA------------------------------------------------------ 430 (731)
T ss_pred cc-----ccccccCHHHHHHHHHHHh------------------------------------------------------
Confidence 22 1245689999999998321
Q ss_pred CCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcc---cCCchhhcCCCCCCCceEEE
Q 003231 488 DSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLP---LRRPDLFKGGLLKPCRGILL 564 (837)
Q Consensus 488 ~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~---l~~~e~~~~~~~~p~~~iLL 564 (837)
+.|.......+......+++.+... |+||+++++.|...+... +..+ .+|..++||
T Consensus 431 -giP~~~~~~~~~~~l~~l~~~l~~~-------------v~GQ~~ai~~l~~~i~~~~~g~~~~-------~~p~~~~lf 489 (731)
T TIGR02639 431 -HIPVKTVSVDDREKLKNLEKNLKAK-------------IFGQDEAIDSLVSSIKRSRAGLGNP-------NKPVGSFLF 489 (731)
T ss_pred -CCChhhhhhHHHHHHHHHHHHHhcc-------------eeCcHHHHHHHHHHHHHHhcCCCCC-------CCCceeEEE
Confidence 1111111111222345667777766 899999999999888642 1111 156667999
Q ss_pred EcCCCChHHHHHHHHHHHhCCcEEEEeccccccc------------cccccHHHHHHHHHHHHhcCCeEEEecccccccC
Q 003231 565 FGPPGTGKTMLAKAIANEAGASFINVSMSTITSK------------WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 565 ~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~------------~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~ 632 (837)
+||||||||++|+++|..++.+++.++|+++... |+|... ...+.+..+..+.+||||||||++.+
T Consensus 490 ~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~ 567 (731)
T TIGR02639 490 TGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP 567 (731)
T ss_pred ECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCH
Confidence 9999999999999999999999999999987542 233322 22355566777889999999998854
Q ss_pred CCCCcchHHHHHHHHHHHHHhhccccccC-------CceEEEEEecCCCC-------------------------CCcHH
Q 003231 633 QRTRVGEHEAMRKIKNEFMTHWDGLLTRN-------GERILVLAATNRPF-------------------------DLDEA 680 (837)
Q Consensus 633 ~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~-------~~~vlVIaTTN~~~-------------------------~Ld~a 680 (837)
.+.+.|++.++.....+ -.+++||+|||... .+.|+
T Consensus 568 ------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pe 635 (731)
T TIGR02639 568 ------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPE 635 (731)
T ss_pred ------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChH
Confidence 56778888887654322 23578999998631 25789
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhh-------cC----CChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Q 003231 681 IIRRFERRIMVGLPSAENREMILKTLLAK-------EK----VEDLDFKELAAMT--EGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 681 L~rRF~~~I~~~~P~~eer~~IL~~~l~~-------~~----~~d~dl~~LA~~t--~G~sg~DL~~L~~~Aa~~av~r 746 (837)
|++||+.++.|.+.+.++..+|++..+.+ .+ +++..++.|+... ..+-.+.|+.+++.-...++.+
T Consensus 636 f~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 636 FRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999887753 11 1566667777652 2455566666665555554443
No 14
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-40 Score=392.58 Aligned_cols=392 Identities=14% Similarity=0.189 Sum_probs=289.0
Q ss_pred HHHHHHHHhhcCCcEEEEEccchhHhhh------cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc
Q 003231 255 SLYKVLVSITETSSVILYLRDVDKLLFQ------SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 255 ~L~~v~~~~~~~~p~Ilfi~di~~~l~~------~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~ 328 (837)
++.+++..+.+.+|.||||||||.++.. ..++.|+|+++|++ |.|.|||+||.++|++.+++|.+|.|||+
T Consensus 266 rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~~D~AL~rRFq- 342 (758)
T PRK11034 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQ- 342 (758)
T ss_pred HHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhhccHHHHhhCc-
Confidence 3444445555568999999999997632 25799999999998 99999999999999999999999999996
Q ss_pred eeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcC
Q 003231 329 NLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDN 408 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~ 408 (837)
+|.|++|+.++++.||+++..++..+|.+..+...+. .+.+|+..|++||+|||++|+.++++++..++...
T Consensus 343 ~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~--------~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~ 414 (758)
T PRK11034 343 KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVR--------AAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV 414 (758)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHH--------HHHHHhhccccCccChHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999998888888877766666665 68999999999999999999999999998887432
Q ss_pred CCccccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhhccCCCCCCCcccccccccccccccC
Q 003231 409 EDPEYRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKKD 488 (837)
Q Consensus 409 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (837)
. ..+..|+.+++...++..-
T Consensus 415 ~-----~~~~~v~~~~i~~v~~~~t------------------------------------------------------- 434 (758)
T PRK11034 415 S-----KRKKTVNVADIESVVARIA------------------------------------------------------- 434 (758)
T ss_pred c-----ccccccChhhHHHHHHHHh-------------------------------------------------------
Confidence 1 1223578888888887221
Q ss_pred CCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCC
Q 003231 489 SENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPP 568 (837)
Q Consensus 489 ~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPp 568 (837)
++|.......+......++.+++.. |+|++++++.|...+...... .. ...+|..++||+|||
T Consensus 435 gip~~~~~~~~~~~l~~l~~~L~~~-------------ViGQ~~ai~~l~~~i~~~~~g---l~-~~~kp~~~~Lf~GP~ 497 (758)
T PRK11034 435 RIPEKSVSQSDRDTLKNLGDRLKML-------------VFGQDKAIEALTEAIKMSRAG---LG-HEHKPVGSFLFAGPT 497 (758)
T ss_pred CCChhhhhhhHHHHHHHHHHHhcce-------------EeCcHHHHHHHHHHHHHHhcc---cc-CCCCCcceEEEECCC
Confidence 1111111111222344677777766 899999999999998752110 00 012567789999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecccccc-----ccccccHHH-----HHHHHHHHHhcCCeEEEecccccccCCCCCcc
Q 003231 569 GTGKTMLAKAIANEAGASFINVSMSTITS-----KWFGEDEKN-----VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG 638 (837)
Q Consensus 569 GtGKT~LAralA~elg~~~i~v~~s~l~s-----~~~G~~e~~-----l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~ 638 (837)
|||||++|+++|..++.+|+.++|+++.. .++|..... ...+.+..++.+.+||||||||++.+
T Consensus 498 GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~------ 571 (758)
T PRK11034 498 GVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP------ 571 (758)
T ss_pred CCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH------
Confidence 99999999999999999999999998753 233322111 12244455667789999999999843
Q ss_pred hHHHHHHHHHHHHHhhccccccCC-------ceEEEEEecCCC-------------------------CCCcHHHHHHHH
Q 003231 639 EHEAMRKIKNEFMTHWDGLLTRNG-------ERILVLAATNRP-------------------------FDLDEAIIRRFE 686 (837)
Q Consensus 639 ~~~~~~~i~~~Ll~~ld~~~~~~~-------~~vlVIaTTN~~-------------------------~~Ld~aL~rRF~ 686 (837)
.+.+.|++.|+.....+. .+++||+|||.- ..+.|+|++|++
T Consensus 572 ------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid 645 (758)
T PRK11034 572 ------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD 645 (758)
T ss_pred ------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCC
Confidence 577888888875433221 468899999932 236799999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhh-------cCC----ChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Q 003231 687 RRIMVGLPSAENREMILKTLLAK-------EKV----EDLDFKELAAMT--EGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 687 ~~I~~~~P~~eer~~IL~~~l~~-------~~~----~d~dl~~LA~~t--~G~sg~DL~~L~~~Aa~~av~r 746 (837)
.++.|+.++.++..+|+...+.. .++ ++..++.|+... ..|-.+.|+.++..-...++.+
T Consensus 646 ~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 646 NIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999998876653 222 555666676543 1344566666665555555444
No 15
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.1e-38 Score=365.52 Aligned_cols=411 Identities=24% Similarity=0.373 Sum_probs=305.5
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--HH-HHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQS--QR-FYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--~~-~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~ 328 (837)
.+++|- .+......+|.|+.++|+|.|+... .+ +-++. ..+...+..+++++. ...++..|.+.++
T Consensus 67 p~~al~-~i~~~~~~~~~~~vl~d~h~~~~~~~~~r~l~~l~-~~~~~~~~~~i~~~~--------~~~~p~el~~~~~- 135 (489)
T CHL00195 67 PLQALE-FIEKLTPETPALFLLKDFNRFLNDISISRKLRNLS-RILKTQPKTIIIIAS--------ELNIPKELKDLIT- 135 (489)
T ss_pred HHHHHH-HHHhcCCCCCcEEEEecchhhhcchHHHHHHHHHH-HHHHhCCCEEEEEcC--------CCCCCHHHHhcee-
Confidence 566664 4455544568999999999988432 12 22322 234445667778764 3678899999997
Q ss_pred eeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcC
Q 003231 329 NLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDN 408 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~ 408 (837)
.+++++|+.++...+++...... . . ...+-....|..-|.+ |+-.+|+.+..-++..+
T Consensus 136 ~~~~~lP~~~ei~~~l~~~~~~~-~---~-----------~~~~~~~~~l~~~~~g---ls~~~~~~~~~~~~~~~---- 193 (489)
T CHL00195 136 VLEFPLPTESEIKKELTRLIKSL-N---I-----------KIDSELLENLTRACQG---LSLERIRRVLSKIIATY---- 193 (489)
T ss_pred EEeecCcCHHHHHHHHHHHHHhc-C---C-----------CCCHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHc----
Confidence 99999999999999987643100 0 0 0111222344445555 66666655554332211
Q ss_pred CCccccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhhccCCCCCCCcccccccccccccccC
Q 003231 409 EDPEYRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKKD 488 (837)
Q Consensus 409 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (837)
. .++.+++...++....
T Consensus 194 ~---------~~~~~~~~~i~~~k~q------------------------------------------------------ 210 (489)
T CHL00195 194 K---------TIDENSIPLILEEKKQ------------------------------------------------------ 210 (489)
T ss_pred C---------CCChhhHHHHHHHHHH------------------------------------------------------
Confidence 1 1334455444431000
Q ss_pred CCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCC
Q 003231 489 SENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPP 568 (837)
Q Consensus 489 ~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPp 568 (837)
+.. +..++....+.++|++|+|++.+|+.+.+.... .+..+...+..+++++||+|||
T Consensus 211 -----------------~~~--~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPp 268 (489)
T CHL00195 211 -----------------IIS--QTEILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQ 268 (489)
T ss_pred -----------------HHh--hhccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCC
Confidence 000 001111122345899999999999999875533 1233445567889999999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHH
Q 003231 569 GTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKN 648 (837)
Q Consensus 569 GtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~ 648 (837)
|||||++|+++|++++.+|+.++++.+.++|+|+++..++.+|..|+..+||||||||||.+++.+...+......+++.
T Consensus 269 GTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~ 348 (489)
T CHL00195 269 GTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLA 348 (489)
T ss_pred CCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876554445566788889
Q ss_pred HHHHhhccccccCCceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC---ChhhHHHHHHH
Q 003231 649 EFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV---EDLDFKELAAM 723 (837)
Q Consensus 649 ~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~---~d~dl~~LA~~ 723 (837)
.|+..|+.. ..+++||+|||+++.+|++++| ||+..++++.|+.++|.+|++.++.+... .+.+++.||..
T Consensus 349 ~lL~~l~~~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~ 424 (489)
T CHL00195 349 TFITWLSEK----KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKL 424 (489)
T ss_pred HHHHHHhcC----CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhh
Confidence 998888742 3469999999999999999998 99999999999999999999999988643 57899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhh
Q 003231 724 TEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAA 803 (837)
Q Consensus 724 t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~p 803 (837)
|+||||+||.++|.+|+..|+.+ .++++.+||..|++++.|
T Consensus 425 T~GfSGAdI~~lv~eA~~~A~~~---------------------------------------~~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 425 SNKFSGAEIEQSIIEAMYIAFYE---------------------------------------KREFTTDDILLALKQFIP 465 (489)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHc---------------------------------------CCCcCHHHHHHHHHhcCC
Confidence 99999999999999998877642 157899999999999999
Q ss_pred cccccccchhhhHHHHHhhc
Q 003231 804 SFASEGSVMNELKQWNDLYG 823 (837)
Q Consensus 804 s~~~~~~~~~~~~~W~digG 823 (837)
++.....-...++.|..-+.
T Consensus 466 ls~~~~e~i~~~~~Wa~~~~ 485 (489)
T CHL00195 466 LAQTEKEQIEALQNWASSGR 485 (489)
T ss_pred CcccCHHHHHHHHHHHHcCC
Confidence 98766666778889987553
No 16
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=357.44 Aligned_cols=334 Identities=21% Similarity=0.274 Sum_probs=261.6
Q ss_pred EEEEEccchhHhhhc--H----H-HHHHHHHHHHhccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCC
Q 003231 269 VILYLRDVDKLLFQS--Q----R-FYNLLDKLLKKLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKL 334 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~--~----~-~~~~lk~~l~~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~ 334 (837)
-||.|||||.+..++ + . -=+.+..+|+|++| ||+||| +||+.+.+|+||.| ||+.++||.+
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIG-----MTNR~DlIDEALLRPGRlEVqmEIsL 400 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIG-----MTNRKDLIDEALLRPGRLEVQMEISL 400 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEe-----ccCchhhHHHHhcCCCceEEEEEEeC
Confidence 588899999966333 1 1 11234566888888 999999 59999999999998 9999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCcc--
Q 003231 335 PEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPE-- 412 (837)
Q Consensus 335 P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~-- 412 (837)
||+++|++||++|+.+|+++ -.+.++++..+|+.+++| |||+|||++|++|.|+++.+.....
T Consensus 401 PDE~gRlQIl~IHT~rMre~------------~~l~~dVdl~elA~lTKN---fSGAEleglVksA~S~A~nR~vk~~~~ 465 (744)
T KOG0741|consen 401 PDEKGRLQILKIHTKRMREN------------NKLSADVDLKELAALTKN---FSGAELEGLVKSAQSFAMNRHVKAGGK 465 (744)
T ss_pred CCccCceEEEEhhhhhhhhc------------CCCCCCcCHHHHHHHhcC---CchhHHHHHHHHHHHHHHHhhhccCcc
Confidence 99999999999999999996 445678999999999999 9999999999999999998754322
Q ss_pred -----ccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhhccCCCCCCCccccccccccccccc
Q 003231 413 -----YRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKK 487 (837)
Q Consensus 413 -----~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (837)
...+++.|+++||-+||.
T Consensus 466 ~~~~~~~~e~lkV~r~DFl~aL~--------------------------------------------------------- 488 (744)
T KOG0741|consen 466 VEVDPVAIENLKVTRGDFLNALE--------------------------------------------------------- 488 (744)
T ss_pred eecCchhhhheeecHHHHHHHHH---------------------------------------------------------
Confidence 124789999999999998
Q ss_pred CCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcC
Q 003231 488 DSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGP 567 (837)
Q Consensus 488 ~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GP 567 (837)
.++|.++..+++++......++.++.+. . .+.+.=..++.. +++++ ..+..++||+||
T Consensus 489 ------dVkPAFG~see~l~~~~~~Gmi~~g~~v---~------~il~~G~llv~q-vk~s~------~s~lvSvLl~Gp 546 (744)
T KOG0741|consen 489 ------DVKPAFGISEEDLERFVMNGMINWGPPV---T------RILDDGKLLVQQ-VKNSE------RSPLVSVLLEGP 546 (744)
T ss_pred ------hcCcccCCCHHHHHHHHhCCceeecccH---H------HHHhhHHHHHHH-hhccc------cCcceEEEEecC
Confidence 3456677788889988888877766531 1 122222222322 34444 367789999999
Q ss_pred CCChHHHHHHHHHHHhCCcEEE-EeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHH
Q 003231 568 PGTGKTMLAKAIANEAGASFIN-VSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKI 646 (837)
Q Consensus 568 pGtGKT~LAralA~elg~~~i~-v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i 646 (837)
||+|||+||..+|...++||+. +++.++.+......-..++.+|+.|++++-+||++|+|++|+.- -+-+..+.+.+
T Consensus 547 ~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--vpIGPRfSN~v 624 (744)
T KOG0741|consen 547 PGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--VPIGPRFSNLV 624 (744)
T ss_pred CCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--cccCchhhHHH
Confidence 9999999999999999999999 45555554433344556899999999999999999999999742 23345677889
Q ss_pred HHHHHHhhccccccCCceEEEEEecCCCCCCcH-HHHHHHHHhhhcCCCCH-HHHHHHHH
Q 003231 647 KNEFMTHWDGLLTRNGERILVLAATNRPFDLDE-AIIRRFERRIMVGLPSA-ENREMILK 704 (837)
Q Consensus 647 ~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~-aL~rRF~~~I~~~~P~~-eer~~IL~ 704 (837)
++.|+..+.... ..+.+.+|++||++...|.. .+.+.|+..+++|..+. ++...++.
T Consensus 625 lQaL~VllK~~p-pkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 625 LQALLVLLKKQP-PKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred HHHHHHHhccCC-CCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHH
Confidence 999999888764 34568999999998777765 67789999999876654 55555544
No 17
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.5e-38 Score=386.99 Aligned_cols=441 Identities=16% Similarity=0.176 Sum_probs=296.5
Q ss_pred HHHHHHHHHHhhc-CCcEEEEEccchhHhh-----hcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccC
Q 003231 253 LQSLYKVLVSITE-TSSVILYLRDVDKLLF-----QSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILF 326 (837)
Q Consensus 253 ~~~L~~v~~~~~~-~~p~Ilfi~di~~~l~-----~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF 326 (837)
-++|.+++.++.+ .+++||||||||.++. +.+++.|+|++.|++ |.++|||+||.++|++.+++|.||.|||
T Consensus 265 e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf 342 (852)
T TIGR03345 265 ENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRF 342 (852)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhC
Confidence 3556777776654 4799999999999774 447899999999998 9999999999999999999999999999
Q ss_pred CceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhh
Q 003231 327 PYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLM 406 (837)
Q Consensus 327 ~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~ 406 (837)
+ .|.|++|+.+++.+||+++...+..+|.+....+.+. .+.+|+..|+.||+|||++||.|+++|+..++.
T Consensus 343 ~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~--------~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~ 413 (852)
T TIGR03345 343 Q-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVV--------AAVELSHRYIPGRQLPDKAVSLLDTACARVALS 413 (852)
T ss_pred e-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHH--------HHHHHcccccccccCccHHHHHHHHHHHHHHHh
Confidence 6 9999999999999999987666666555554544444 899999999999999999999999999999987
Q ss_pred cCCCccccCCceeecHHhHHHHHHHhhhhhhccc-c------------ccc-----ccccc--ccccccchh--------
Q 003231 407 DNEDPEYRNGKLVISSKSLSHGLSIFQECKRFGK-D------------SLK-----METNA--DGAKETGEE-------- 458 (837)
Q Consensus 407 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~-~------------~~~-----~~~~~--~~~~~~~~~-------- 458 (837)
....|. ..+++++.+..++.....-. + .+. .+... ....+..+.
T Consensus 414 ~~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (852)
T TIGR03345 414 QNATPA--------ALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILA 485 (852)
T ss_pred ccCCch--------hHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665553 11233333222211100000 0 000 00000 000000000
Q ss_pred -----------------------hh----hhhccCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCchHHHhhC
Q 003231 459 -----------------------AV----TAKTESKENPASESRSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIR 511 (837)
Q Consensus 459 -----------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 511 (837)
+. ...............++.+....+...+++|..............+++.++
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~ 565 (852)
T TIGR03345 486 LRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLA 565 (852)
T ss_pred HHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhc
Confidence 00 000000000001112222222333344556655554444444556777777
Q ss_pred CCccCCCCCCccccccccchHHHHHHHHHHHcc---cCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CC
Q 003231 512 PEVIPANEIGVTFADIGALNEIKESLQELVMLP---LRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GA 585 (837)
Q Consensus 512 ~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~---l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~ 585 (837)
.. |+|++.+++.+.+.+... +..|. +|...+||+||||||||.+|+++|..+ +.
T Consensus 566 ~~-------------v~GQ~~Av~~v~~~i~~~~~gl~~~~-------~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~ 625 (852)
T TIGR03345 566 ER-------------VIGQDHALEAIAERIRTARAGLEDPR-------KPLGVFLLVGPSGVGKTETALALAELLYGGEQ 625 (852)
T ss_pred Ce-------------EcChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEEECCCCCCHHHHHHHHHHHHhCCCc
Confidence 76 999999999999988652 22222 565679999999999999999999998 46
Q ss_pred cEEEEeccccccc------------cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHh
Q 003231 586 SFINVSMSTITSK------------WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTH 653 (837)
Q Consensus 586 ~~i~v~~s~l~s~------------~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ 653 (837)
.++.++|+++... |+|..+.. .+.+..++.+++||+|||||++.+ .+.+.|++.
T Consensus 626 ~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~------------~v~~~Llq~ 691 (852)
T TIGR03345 626 NLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHP------------DVLELFYQV 691 (852)
T ss_pred ceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcCH------------HHHHHHHHH
Confidence 8899999887432 44443322 245566778899999999998753 566777777
Q ss_pred hccccccCC-------ceEEEEEecCCCC-----------------------------CCcHHHHHHHHHhhhcCCCCHH
Q 003231 654 WDGLLTRNG-------ERILVLAATNRPF-----------------------------DLDEAIIRRFERRIMVGLPSAE 697 (837)
Q Consensus 654 ld~~~~~~~-------~~vlVIaTTN~~~-----------------------------~Ld~aL~rRF~~~I~~~~P~~e 697 (837)
++.....++ .+.+||+|||... .+.|+|++|++ +|.|..++.+
T Consensus 692 ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e 770 (852)
T TIGR03345 692 FDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDD 770 (852)
T ss_pred hhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHH
Confidence 776543322 4689999998521 25688888996 8899999999
Q ss_pred HHHHHHHHHHhhc--------CC----ChhhHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH
Q 003231 698 NREMILKTLLAKE--------KV----EDLDFKELAAMTEG--YSGSDLKNLCVTAAYRPVREL 747 (837)
Q Consensus 698 er~~IL~~~l~~~--------~~----~d~dl~~LA~~t~G--~sg~DL~~L~~~Aa~~av~r~ 747 (837)
+..+|+...+... ++ ++...+.|+....+ |-.+.|.++++.-...++.+.
T Consensus 771 ~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 771 VLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999988766431 22 56667777777643 556777777766555555543
No 18
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-39 Score=351.35 Aligned_cols=230 Identities=40% Similarity=0.609 Sum_probs=215.0
Q ss_pred ccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 514 VIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 514 ~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
+.|.....++|+|+-|+|++|++|.+.+.. ++.|+-|...+-+-|+||||+||||||||+|||++|.+.+.||+..+.+
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS 371 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS 371 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecccc
Confidence 333344578999999999999999999988 9999999988889999999999999999999999999999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC
Q 003231 594 TITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR 673 (837)
Q Consensus 594 ~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~ 673 (837)
++-..|+|.....++.+|..|++.+||||||||||.+.++|.....+ ..++.+|+|+..|||+..+. .|+||++||.
T Consensus 372 EFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNe--GiIvigATNf 448 (752)
T KOG0734|consen 372 EFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNE--GIIVIGATNF 448 (752)
T ss_pred chhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCC--ceEEEeccCC
Confidence 99999999999999999999999999999999999999998876555 88999999999999996554 5999999999
Q ss_pred CCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003231 674 PFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747 (837)
Q Consensus 674 ~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~ 747 (837)
|+.||+++.| |||++|.+|.||..-|.+||+.++.+... .++|+..||+-|.||+|+||.||++.||..|....
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG 525 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 9999999999 99999999999999999999999999988 79999999999999999999999999999987753
No 19
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=4.4e-36 Score=366.90 Aligned_cols=437 Identities=17% Similarity=0.195 Sum_probs=292.7
Q ss_pred HHHHHHHHHhhcCCcEEEEEccchhHhhh-----cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc
Q 003231 254 QSLYKVLVSITETSSVILYLRDVDKLLFQ-----SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 254 ~~L~~v~~~~~~~~p~Ilfi~di~~~l~~-----~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~ 328 (837)
++|.+++.++.+.+|+||||||||.++.. ..++.++||+.|++ |.|.|||+||.++|++..+.|.+|.+||+
T Consensus 258 ~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~- 334 (821)
T CHL00095 258 ERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHIEKDPALERRFQ- 334 (821)
T ss_pred HHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcce-
Confidence 45777777776678999999999997742 24689999999998 99999999999999999999999999997
Q ss_pred eeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcC
Q 003231 329 NLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDN 408 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~ 408 (837)
.|++.+|+.++...|++.....+.+++++....+.+. .+.+|+..|+.||+||+++|+.|+++++..++...
T Consensus 335 ~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~--------~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~ 406 (821)
T CHL00095 335 PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALE--------AAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINS 406 (821)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHH--------HHHHHhhccCccccCchHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999998877777766553333333 78899999999999999999999999999998765
Q ss_pred CCccccCCceeecHHhHHHHHHHhhhhhhccccccccccccccc-------cccchhhhhhhccC---CCCCCCcccccc
Q 003231 409 EDPEYRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGA-------KETGEEAVTAKTES---KENPASESRSEM 478 (837)
Q Consensus 409 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~ 478 (837)
..|. ..+.+++-+..++..+... ...+++..+. ....+......... .........++.
T Consensus 407 ~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 475 (821)
T CHL00095 407 RLPP--------AARELDKELREILKDKDEA---IREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEE 475 (821)
T ss_pred CCch--------hHHHHHHHHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHH
Confidence 5443 1122222222111100000 0000000000 00000000000000 000001112222
Q ss_pred cccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcc---cCCchhhcCCC
Q 003231 479 EKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLP---LRRPDLFKGGL 555 (837)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~---l~~~e~~~~~~ 555 (837)
+....+...+++|..............+++.+... |+||+++++.|...+... +..+.
T Consensus 476 ~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~-------------v~GQ~~ai~~l~~~i~~~~~gl~~~~------ 536 (821)
T CHL00095 476 DIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKR-------------IIGQDEAVVAVSKAIRRARVGLKNPN------ 536 (821)
T ss_pred HHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCc-------------CcChHHHHHHHHHHHHHHhhcccCCC------
Confidence 33333444455555544433333344677777766 899999999999888642 22222
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------------cccccHHHHHHHHHHHHhcCCe
Q 003231 556 LKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK------------WFGEDEKNVRALFTLAAKVSPT 620 (837)
Q Consensus 556 ~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~------------~~G~~e~~l~~lf~~A~~~~ps 620 (837)
+|..++||+||||||||++|+++|+.+ +.++++++++++... |+|..+. ..+.+..+..+.+
T Consensus 537 -~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~~~~~~~p~~ 613 (821)
T CHL00095 537 -RPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPYT 613 (821)
T ss_pred -CCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc--chHHHHHHhCCCe
Confidence 566789999999999999999999988 468999999887432 3333222 2466677778889
Q ss_pred EEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccC-------CceEEEEEecCCCC------------------
Q 003231 621 IIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRN-------GERILVLAATNRPF------------------ 675 (837)
Q Consensus 621 VLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~-------~~~vlVIaTTN~~~------------------ 675 (837)
||+|||+|++.+ .+.+.|++.++.....+ -.+.+||+|||...
T Consensus 614 VvllDeieka~~------------~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~ 681 (821)
T CHL00095 614 VVLFDEIEKAHP------------DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQ 681 (821)
T ss_pred EEEECChhhCCH------------HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccc
Confidence 999999998853 56778888888643222 24689999998521
Q ss_pred -------------------CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh-------cCC----ChhhHHHHHHHc-
Q 003231 676 -------------------DLDEAIIRRFERRIMVGLPSAENREMILKTLLAK-------EKV----EDLDFKELAAMT- 724 (837)
Q Consensus 676 -------------------~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~-------~~~----~d~dl~~LA~~t- 724 (837)
.+.|+|++|++.++.|.+.+.++..+|++..+.+ .++ ++...+.|+...
T Consensus 682 ~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~ 761 (821)
T CHL00095 682 LSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGY 761 (821)
T ss_pred cccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcC
Confidence 0347788899999999999999999998877654 221 455566677752
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHH
Q 003231 725 E-GYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 725 ~-G~sg~DL~~L~~~Aa~~av~r 746 (837)
+ .|-.+.|+.+++.-...++.+
T Consensus 762 ~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 762 NPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred CCCCChhhHHHHHHHHHHHHHHH
Confidence 2 344566666655555444443
No 20
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=8.9e-36 Score=365.19 Aligned_cols=450 Identities=18% Similarity=0.216 Sum_probs=291.3
Q ss_pred HHHHHHHHHhhc-CCcEEEEEccchhHhh-----hcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC
Q 003231 254 QSLYKVLVSITE-TSSVILYLRDVDKLLF-----QSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP 327 (837)
Q Consensus 254 ~~L~~v~~~~~~-~~p~Ilfi~di~~~l~-----~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~ 327 (837)
++|..++.++.+ ..|+||||||+|.++. |+.++.++|++++++ |.|.|||+||.++|++.+++|.+|.|||+
T Consensus 252 ~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt~~e~r~~~~~d~al~rRf~ 329 (852)
T TIGR03346 252 ERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATTLDEYRKYIEKDAALERRFQ 329 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCcHHHHHHHhhcCHHHHhcCC
Confidence 345555555543 3699999999999763 235789999999997 99999999999999999999999999997
Q ss_pred ceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhc
Q 003231 328 YNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMD 407 (837)
Q Consensus 328 ~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~ 407 (837)
.|.|++|+.++++.||+++..++..+|.+......+. .|.+|+..|+.||+|||++||.|+++++..++..
T Consensus 330 -~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~--------~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~ 400 (852)
T TIGR03346 330 -PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIV--------AAATLSHRYITDRFLPDKAIDLIDEAAARIRMEI 400 (852)
T ss_pred -EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHH--------HHHHhccccccccCCchHHHHHHHHHHHHHHhhc
Confidence 8999999999999999998777777666665555555 8899999999999999999999999999998865
Q ss_pred CCCccc-c--CCce---e-----ec-----------------HHhHHHHHHHhhhhhhcccc----------cc---c--
Q 003231 408 NEDPEY-R--NGKL---V-----IS-----------------SKSLSHGLSIFQECKRFGKD----------SL---K-- 444 (837)
Q Consensus 408 ~~~~~~-~--~~~~---~-----i~-----------------~~~~~~~l~~~~~~~~~~~~----------~~---~-- 444 (837)
...|.- . ..++ . +. .+.+++-+..++..-...++ .+ +
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (852)
T TIGR03346 401 DSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLE 480 (852)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544430 0 0000 0 00 00111111111100000000 00 0
Q ss_pred ---cc---ccccc-----cccc---chhhhh-hhccC--CCCCCCcccccccccccccccCCCCCCCCCCCCCCCCchHH
Q 003231 445 ---ME---TNADG-----AKET---GEEAVT-AKTES--KENPASESRSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFE 507 (837)
Q Consensus 445 ---~~---~~~~~-----~~~~---~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 507 (837)
.+ +...+ .... ...... .+... ...-.....++.+....+...+++|.......+......++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~ 560 (852)
T TIGR03346 481 LEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHME 560 (852)
T ss_pred HHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 00 00000 0000 000000 00000 00000011112222222333344444433333333334555
Q ss_pred HhhCCCccCCCCCCccccccccchHHHHHHHHHHHcc---cCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 003231 508 KRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLP---LRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA- 583 (837)
Q Consensus 508 ~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~---l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el- 583 (837)
+.+... |+|++.+++.+...+... +..|. +|...+||+||||||||++|+++|..+
T Consensus 561 ~~l~~~-------------v~GQ~~av~~v~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 561 EVLHER-------------VVGQDEAVEAVSDAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred HHhhcc-------------cCCChHHHHHHHHHHHHHhccCCCCC-------CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 655555 899999999999988752 12222 567789999999999999999999987
Q ss_pred --CCcEEEEeccccccc------------cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHH
Q 003231 584 --GASFINVSMSTITSK------------WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNE 649 (837)
Q Consensus 584 --g~~~i~v~~s~l~s~------------~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~ 649 (837)
+.+++.++|+++... |+|..+. ..+....+..+.+||||||||++.+ .+.+.
T Consensus 621 ~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v~~~p~~vlllDeieka~~------------~v~~~ 686 (852)
T TIGR03346 621 DDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEKAHP------------DVFNV 686 (852)
T ss_pred CCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHHHcCCCcEEEEeccccCCH------------HHHHH
Confidence 578999999887543 2232221 2355556677889999999998753 56677
Q ss_pred HHHhhccccccC-------CceEEEEEecCCCC-------------------------CCcHHHHHHHHHhhhcCCCCHH
Q 003231 650 FMTHWDGLLTRN-------GERILVLAATNRPF-------------------------DLDEAIIRRFERRIMVGLPSAE 697 (837)
Q Consensus 650 Ll~~ld~~~~~~-------~~~vlVIaTTN~~~-------------------------~Ld~aL~rRF~~~I~~~~P~~e 697 (837)
|++.++.....+ -.+.+||+|||... .+.|+|++|++.++.|.+++.+
T Consensus 687 Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e 766 (852)
T TIGR03346 687 LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGRE 766 (852)
T ss_pred HHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHH
Confidence 777776543222 24578999999721 2457888899999999999999
Q ss_pred HHHHHHHHHHhh-------c----CCChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 003231 698 NREMILKTLLAK-------E----KVEDLDFKELAAMT--EGYSGSDLKNLCVTAAYRPVRELI 748 (837)
Q Consensus 698 er~~IL~~~l~~-------~----~~~d~dl~~LA~~t--~G~sg~DL~~L~~~Aa~~av~r~~ 748 (837)
...+|+...+.. . .+++..++.|+... ..+..+.|++++......++.+.+
T Consensus 767 ~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 767 QIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 999998776642 1 12566667777762 246678888888877777766543
No 21
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-37 Score=339.00 Aligned_cols=282 Identities=46% Similarity=0.774 Sum_probs=255.3
Q ss_pred CCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 003231 516 PANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI 595 (837)
Q Consensus 516 ~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l 595 (837)
......+.|+|+.|++.+++.+.+++.+|+.++++|.+.. .|.+++||+||||+|||+|+++||.+.++.|+.++++.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3344578999999999999999999999999999998753 688999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC
Q 003231 596 TSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF 675 (837)
Q Consensus 596 ~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~ 675 (837)
.++|+|+.++.++.+|..|+..+|+||||||+|+++..| ....++..+++..+|+..+++......++|+||+|||.|+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 999999999999999999999999999999999999998 5568888999999999999999888888999999999999
Q ss_pred CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 676 DLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 676 ~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
.+|++++|||..++++|.|+.+.|..+|..++.+.+. .+.+++.|++.|+||+++||.++|.+|++.+.+.......
T Consensus 302 e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~- 380 (428)
T KOG0740|consen 302 ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTD- 380 (428)
T ss_pred HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchh-
Confidence 9999999999999999999999999999999998743 7899999999999999999999999999999887543200
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCCC
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGG 826 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~~ 826 (837)
.........|+++..||+.|.+.++|+.+.++ ..-+..|++.+|...
T Consensus 381 ------------------------~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~--l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 381 ------------------------LEFIDADKIRPITYPDFKNAFKNIKPSVSLEG--LEKYEKWDKEFGSSE 427 (428)
T ss_pred ------------------------hhhcchhccCCCCcchHHHHHHhhccccCccc--cchhHHHhhhhcccc
Confidence 01123356799999999999999999999774 778889999999764
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-36 Score=348.47 Aligned_cols=229 Identities=44% Similarity=0.700 Sum_probs=214.2
Q ss_pred CCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 517 ANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 517 ~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
..+++++|.|+.|++++|++|.+++.. |++|+.|...+.+.|+|+||+||||||||.||+|+|.+.|.||+.+++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 455679999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCC---CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC
Q 003231 597 SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRT---RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR 673 (837)
Q Consensus 597 s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~---~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~ 673 (837)
..++|.....++.+|..|+..+||||||||||.+...|. ..+.+......+|+|+..||+.... ..|+|+++||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999999999999999999999999999999999998884 3345566678999999999999655 45999999999
Q ss_pred CCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 003231 674 PFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELI 748 (837)
Q Consensus 674 ~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~ 748 (837)
++.||++++| |||+.|.++.|+...|.+|++.++++..+ +++++..+|.+|.||+|+||.++|.+|+..|+++..
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 9999999999 99999999999999999999999999888 788999999999999999999999999999999643
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.4e-36 Score=304.68 Aligned_cols=226 Identities=35% Similarity=0.517 Sum_probs=199.7
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWF 600 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~ 600 (837)
.++|+|++|++++|...+-++.. +.+|+.|..+ .|+++|||||||||||++|+++|++...||+-+.+.++.+.++
T Consensus 117 ~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 46999999999999998776666 9999999886 4689999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHH
Q 003231 601 GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEA 680 (837)
Q Consensus 601 G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~a 680 (837)
|.....++.+++.|++.+|||+||||+|.+.-.|.-..-......++|.|++.||++.. +..|+.||+||+|+.||++
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE--NEGVVTIAATNRPELLDPA 270 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc--CCceEEEeecCChhhcCHH
Confidence 99999999999999999999999999999975543222223445789999999999964 4559999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHHHh
Q 003231 681 IIRRFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKN-LCVTAAYRPVRELIQEER 752 (837)
Q Consensus 681 L~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~-L~~~Aa~~av~r~~~~~~ 752 (837)
+++||...|+|.+|+.++|..|++.++...++ -+.+++.++..+.|+||+||.. ++..|.++|+.+..+.+.
T Consensus 271 iRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~ 344 (368)
T COG1223 271 IRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVE 344 (368)
T ss_pred HHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhh
Confidence 99999999999999999999999999999998 6788999999999999999984 566777777776544333
No 24
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-36 Score=321.80 Aligned_cols=272 Identities=23% Similarity=0.352 Sum_probs=226.9
Q ss_pred CCChHHHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHH
Q 003231 46 GVSGEQIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQML 125 (837)
Q Consensus 46 ~~~~~~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~L 125 (837)
.++.+++|.-+...||+|++|+|+|+++++. |.+|+.|.+.+..+|+++++++++. |...+++|||+||++++++||
T Consensus 67 ~i~~ne~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~g~-Ll~p~kGiLL~GPpG~GKTml 143 (386)
T KOG0737|consen 67 IIQKNEYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAKGK-LLRPPKGILLYGPPGTGKTML 143 (386)
T ss_pred hhhhhHHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhcccc-cccCCccceecCCCCchHHHH
Confidence 7889999999999999999999999999999 9999999999999999999988554 889999999999999999999
Q ss_pred HHHHhhhhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCcccccc
Q 003231 126 AKALAHFFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKS 205 (837)
Q Consensus 126 akALA~~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (837)
|||+|++.||.|++|+++.+++|| ||++.|
T Consensus 144 AKA~Akeaga~fInv~~s~lt~KW---fgE~eK----------------------------------------------- 173 (386)
T KOG0737|consen 144 AKAIAKEAGANFINVSVSNLTSKW---FGEAQK----------------------------------------------- 173 (386)
T ss_pred HHHHHHHcCCCcceeeccccchhh---HHHHHH-----------------------------------------------
Confidence 999999999999999999998877 666544
Q ss_pred ccccCCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--
Q 003231 206 RCMEGSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS-- 283 (837)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-- 283 (837)
++.++|.++.++ +|+||||||||++|+.+
T Consensus 174 ----------------------------------------------lv~AvFslAsKl---~P~iIFIDEvds~L~~R~s 204 (386)
T KOG0737|consen 174 ----------------------------------------------LVKAVFSLASKL---QPSIIFIDEVDSFLGQRRS 204 (386)
T ss_pred ----------------------------------------------HHHHHHhhhhhc---CcceeehhhHHHHHhhccc
Confidence 899999999988 99999999999999554
Q ss_pred ----------HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHH
Q 003231 284 ----------QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMK 353 (837)
Q Consensus 284 ----------~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~ 353 (837)
++||.+|+++.++-+..|+|+|| ||+++|+|+|+.||||.++.|++|+.++|.+||+..|....
T Consensus 205 ~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA-----TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~- 278 (386)
T KOG0737|consen 205 TDHEATAMMKNEFMALWDGLSSKDSERVLVLGA-----TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEK- 278 (386)
T ss_pred chHHHHHHHHHHHHHHhccccCCCCceEEEEeC-----CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccc-
Confidence 56999999999986657999999 99999999999999999999999999999999998774322
Q ss_pred HhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHH-----HHhhhhcCCCcc--cc-CCceeecHHhH
Q 003231 354 VLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSA-----ISHHLMDNEDPE--YR-NGKLVISSKSL 425 (837)
Q Consensus 354 ~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a-----~~~~l~~~~~~~--~~-~~~~~i~~~~~ 425 (837)
+.++++......+++|++++||.++|..=-+++ |.+++... ...++.....+. .. -.-..+.++||
T Consensus 279 ---~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~---ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf 352 (386)
T KOG0737|consen 279 ---LEDDVDLDEIAQMTEGYSGSDLKELCRLAALRP---IRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDF 352 (386)
T ss_pred ---cCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhH---HHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHH
Confidence 557777778889999999999999998743333 44444443 111111111110 00 01235788999
Q ss_pred HHHHHH
Q 003231 426 SHGLSI 431 (837)
Q Consensus 426 ~~~l~~ 431 (837)
.++++.
T Consensus 353 ~~a~~~ 358 (386)
T KOG0737|consen 353 PKAINR 358 (386)
T ss_pred HHHHHh
Confidence 999883
No 25
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=1.2e-34 Score=353.91 Aligned_cols=440 Identities=19% Similarity=0.208 Sum_probs=275.5
Q ss_pred HHHHHHHHHhhc-CCcEEEEEccchhHhh-----hcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC
Q 003231 254 QSLYKVLVSITE-TSSVILYLRDVDKLLF-----QSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP 327 (837)
Q Consensus 254 ~~L~~v~~~~~~-~~p~Ilfi~di~~~l~-----~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~ 327 (837)
++|.+++.++.+ .+|+||||||+|.++. |+.+..++|++.|++ |.++|||+||.++|++.+++|.||.|||+
T Consensus 257 ~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf~ 334 (857)
T PRK10865 257 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQ 334 (857)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhCC
Confidence 345555555433 4799999999999762 236789999999998 99999999999999999999999999997
Q ss_pred ceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhc
Q 003231 328 YNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMD 407 (837)
Q Consensus 328 ~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~ 407 (837)
.|.|.+|+.++++.||+++..++..+|.+......+. .+..|+..|+.||+|||++|+.++.+|...++..
T Consensus 335 -~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~--------~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~ 405 (857)
T PRK10865 335 -KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIV--------AAATLSHRYIADRQLPDKAIDLIDEAASSIRMQI 405 (857)
T ss_pred -EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHH--------HHHHHhhccccCCCCChHHHHHHHHHhccccccc
Confidence 8999999999999999997766666554444444443 6779999999999999999999999999988876
Q ss_pred CCCccccCCceeecHHhHHHHHHHhhhhh----hc-------------------------cccccccccccccc--cccc
Q 003231 408 NEDPEYRNGKLVISSKSLSHGLSIFQECK----RF-------------------------GKDSLKMETNADGA--KETG 456 (837)
Q Consensus 408 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~----~~-------------------------~~~~~~~~~~~~~~--~~~~ 456 (837)
...|+. + +.+++.+..++... .. -++..+.+...... ....
T Consensus 406 ~~kp~~----L----~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ 477 (857)
T PRK10865 406 DSKPEE----L----DRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKA 477 (857)
T ss_pred ccChHH----H----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 554431 0 11111111111000 00 00000000000000 0000
Q ss_pred hhhh-hhh---cc---------------------------CCC---CC-CCcccccccccccccccCCCCCCCCCCCCCC
Q 003231 457 EEAV-TAK---TE---------------------------SKE---NP-ASESRSEMEKSVPVVKKDSENPPPAKAPEFP 501 (837)
Q Consensus 457 ~~~~-~~~---~~---------------------------~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (837)
+... ..+ .+ ... .. -....++.+....+...+++|..........
T Consensus 478 ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~ 557 (857)
T PRK10865 478 ELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESERE 557 (857)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHH
Confidence 0000 000 00 000 00 0011111222222333344444433333222
Q ss_pred CCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcc---cCCchhhcCCCCCCCceEEEEcCCCChHHHHHHH
Q 003231 502 PDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLP---LRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKA 578 (837)
Q Consensus 502 ~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~---l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAra 578 (837)
....+++.+... |+|++.+++.|...+... +..|. +|...+||+||||||||++|++
T Consensus 558 ~l~~l~~~l~~~-------------viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~G~GKT~lA~a 617 (857)
T PRK10865 558 KLLRMEQELHHR-------------VIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELCKA 617 (857)
T ss_pred HHHHHHHHhCCe-------------EeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEECCCCCCHHHHHHH
Confidence 333455555544 899999999999988652 12222 4556899999999999999999
Q ss_pred HHHHh---CCcEEEEeccccccc-----cc-------cccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHH
Q 003231 579 IANEA---GASFINVSMSTITSK-----WF-------GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAM 643 (837)
Q Consensus 579 lA~el---g~~~i~v~~s~l~s~-----~~-------G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~ 643 (837)
+|..+ +.+++.++|+++... .+ |..+. ..+....+..+.+||||||++++.+
T Consensus 618 La~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka~~----------- 684 (857)
T PRK10865 618 LANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKAHP----------- 684 (857)
T ss_pred HHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhCCH-----------
Confidence 99987 568999999887542 12 22221 1234444566679999999998743
Q ss_pred HHHHHHHHHhhccccccC-------CceEEEEEecCCC-------------------------CCCcHHHHHHHHHhhhc
Q 003231 644 RKIKNEFMTHWDGLLTRN-------GERILVLAATNRP-------------------------FDLDEAIIRRFERRIMV 691 (837)
Q Consensus 644 ~~i~~~Ll~~ld~~~~~~-------~~~vlVIaTTN~~-------------------------~~Ld~aL~rRF~~~I~~ 691 (837)
.+.+.|++.++.....+ -.+.+||+|||.. ..+.|+|++|++.++.|
T Consensus 685 -~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF 763 (857)
T PRK10865 685 -DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVF 763 (857)
T ss_pred -HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEec
Confidence 45666777766432221 2356789999872 23568999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhc-------C----CChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Q 003231 692 GLPSAENREMILKTLLAKE-------K----VEDLDFKELAAMTE--GYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 692 ~~P~~eer~~IL~~~l~~~-------~----~~d~dl~~LA~~t~--G~sg~DL~~L~~~Aa~~av~r 746 (837)
.+++.+....|++.++... + +++..++.|+...- .|-.+.|+.+++.-...++.+
T Consensus 764 ~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 764 HPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 9999999999988777542 1 14444555554311 123455665555544444443
No 26
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=300.90 Aligned_cols=257 Identities=32% Similarity=0.572 Sum_probs=229.3
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
++..+.....+ ...|..++.||+|++..++.|.+++.+|+.+++.|...+++||+|+|+|||||||||.+||+.|.+.+
T Consensus 152 eyDsrVkaMev-DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 152 EYDSRVKAMEV-DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred hhhhhcceeee-ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 44444444333 23345689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCC
Q 003231 585 ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNG 662 (837)
Q Consensus 585 ~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~ 662 (837)
..|+.+....++..|+|...+.++..|..|+..+|+||||||+|.+..+|..+ .+.....+.+-+|++++|++.+.
T Consensus 231 aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~-- 308 (424)
T KOG0652|consen 231 ATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD-- 308 (424)
T ss_pred chHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--
Confidence 99999999999999999999999999999999999999999999998877653 23345567777889999998554
Q ss_pred ceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 663 ERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 663 ~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
.+|-||++||+.+.|||+++| |+++.|+||.|+.+.|..|++.+-++.++ +|+++++||+-|++|.|++.+++|.+|
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhh
Confidence 569999999999999999999 99999999999999999999999999998 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhh
Q 003231 740 AYRPVRELIQEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVA 802 (837)
Q Consensus 740 a~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ 802 (837)
.+.|+++. ...++-+||..++.+|+
T Consensus 389 GMiALRr~--------------------------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 389 GMIALRRG--------------------------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred hHHHHhcc--------------------------------------cccccHHHHHHHHHHHH
Confidence 99999863 13578899999988876
No 27
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-35 Score=297.80 Aligned_cols=226 Identities=39% Similarity=0.681 Sum_probs=212.7
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.+++.||+|++-.|+++++++.+|+.+.++|+..++.|++|+|+|||||||||+||+++|+...+.|+++..++++.+
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
|.|+...-++.+|..|+.++|+||||||||.+..+|... +......+++-+|++.|||+.... ++-||++||+.+.
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~--nvkvimatnradt 306 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT--NVKVIMATNRADT 306 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc--ceEEEEecCcccc
Confidence 999999999999999999999999999999999877553 445567788999999999986544 5999999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r 746 (837)
+||+++| |+++.|+||+|+..++..++..+..+.++ +++|++.+..+-+..|++||.++|++|.+.|+++
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh
Confidence 9999999 99999999999999999999999999999 8999999999999999999999999999999986
No 28
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=335.93 Aligned_cols=263 Identities=39% Similarity=0.634 Sum_probs=248.2
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFG 601 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G 601 (837)
++ ++++|.......+++++..|++++..+...+.++++++|+|||||||||.+++++|++.++.++.+++++++.++.|
T Consensus 182 ~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~g 260 (693)
T KOG0730|consen 182 VG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPG 260 (693)
T ss_pred cc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhccc
Confidence 45 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcC-CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHH
Q 003231 602 EDEKNVRALFTLAAKVS-PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEA 680 (837)
Q Consensus 602 ~~e~~l~~lf~~A~~~~-psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~a 680 (837)
+++++++..|+.+.+++ |++|||||+|.+++++..... ..+++..+++.+||++. ...+++||++||+|..|+++
T Consensus 261 Ete~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~--~~~~vivl~atnrp~sld~a 336 (693)
T KOG0730|consen 261 ETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLK--PDAKVIVLAATNRPDSLDPA 336 (693)
T ss_pred chHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCc--CcCcEEEEEecCCccccChh
Confidence 99999999999999999 999999999999998876544 67899999999999985 34569999999999999999
Q ss_pred HHH-HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Q 003231 681 IIR-RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEK 758 (837)
Q Consensus 681 L~r-RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~ 758 (837)
++| ||++.+.+..|+...|.+|++.+..+.+. +++++..+|..+.||+|+||..+|++|+..++++
T Consensus 337 lRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------------ 404 (693)
T KOG0730|consen 337 LRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR------------ 404 (693)
T ss_pred hhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------------
Confidence 999 99999999999999999999999999998 5899999999999999999999999999988763
Q ss_pred HHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCCCcccccc
Q 003231 759 KKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKEQ 832 (837)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~~~r~~~~ 832 (837)
++++|..|+..++||..++.....|+++|+||||++..|++.|
T Consensus 405 -------------------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq 447 (693)
T KOG0730|consen 405 -------------------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQ 447 (693)
T ss_pred -------------------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHH
Confidence 6789999999999999999999999999999999999998866
No 29
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=325.83 Aligned_cols=245 Identities=36% Similarity=0.619 Sum_probs=221.4
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|+||+|++.+++.|++.+..|+.+|+.|...++.+++++||+||||||||++|+++|++++.+|+.+.++++..+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
|+|+.+..++.+|..|+...|+||||||+|.+++.+... +......+++.+++..+++.... .+++||+|||+++.
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRADT 296 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCchh
Confidence 999999999999999999999999999999998766432 22334567778888888886443 35899999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
+||+++| ||+..|+|+.|+.++|..|++.++.+.++ .++++..++..++||+|+||.++|++|++.|+++.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------ 370 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------ 370 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999998 99999999999999999999999998887 78999999999999999999999999999998752
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhh
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAA 803 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~p 803 (837)
...++++||.+|++++..
T Consensus 371 --------------------------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 --------------------------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred --------------------------------CCccCHHHHHHHHHHHHh
Confidence 136899999999988754
No 30
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=304.97 Aligned_cols=242 Identities=36% Similarity=0.631 Sum_probs=222.4
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWF 600 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~ 600 (837)
.-+|.||+|++..++.|++.+.+|+.+|+.|..-+++||++++|||+||||||.||+|+|+...+.|+++-.+++..+|.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkyl 260 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHh
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCc
Q 003231 601 GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLD 678 (837)
Q Consensus 601 G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld 678 (837)
|...+.++++|..|..++|+|+||||||.+..+|... +......+.+-+|++++|++..+ ..|-||++||+.+.||
T Consensus 261 GdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnrie~LD 338 (440)
T KOG0726|consen 261 GDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIETLD 338 (440)
T ss_pred ccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEecccccccC
Confidence 9999999999999999999999999999999888553 34455666777899999998653 3599999999999999
Q ss_pred HHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 003231 679 EAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKD 755 (837)
Q Consensus 679 ~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~ 755 (837)
|+++| |+|+.|.|+.|+...+..|+..+..+..+ .+++++.+...-+.+||+||+++|.+|.+.|+|+..
T Consensus 339 PaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR------- 411 (440)
T KOG0726|consen 339 PALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR------- 411 (440)
T ss_pred HhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH-------
Confidence 99999 99999999999999999999999999888 899999999888899999999999999999998631
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhh
Q 003231 756 MEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVA 802 (837)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ 802 (837)
..++++||++|.+.|-
T Consensus 412 -------------------------------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 412 -------------------------------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred -------------------------------hhccHHHHHHHHHHHH
Confidence 2478999999998774
No 31
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-35 Score=294.18 Aligned_cols=242 Identities=35% Similarity=0.584 Sum_probs=222.0
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFG 601 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G 601 (837)
-+++=|+|++..++.|++.+.+|.++|++|+..++..|+|+|||||||||||.||+++|....+.|++++.++++.+|+|
T Consensus 144 StYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ig 223 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIG 223 (404)
T ss_pred cHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhh
Confidence 36777999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEecccccccCCCCC--cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcH
Q 003231 602 EDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR--VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDE 679 (837)
Q Consensus 602 ~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~--~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~ 679 (837)
+...-++.+|-.|+.++|+|||.||||++...|.. .+......+.+-+|++++|++.... ++-||++||+.+-|||
T Consensus 224 egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk--nikvimatnridild~ 301 (404)
T KOG0728|consen 224 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK--NIKVIMATNRIDILDP 301 (404)
T ss_pred hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc--ceEEEEeccccccccH
Confidence 99999999999999999999999999999877643 2334556677788999999986554 5999999999999999
Q ss_pred HHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 003231 680 AIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDM 756 (837)
Q Consensus 680 aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~ 756 (837)
+++| |.|+.|+||+|+.+.|.+||+.+-++.++ ..+++..+|+...|.||++++.+|.+|.+.|+++-.
T Consensus 302 allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr-------- 373 (404)
T KOG0728|consen 302 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR-------- 373 (404)
T ss_pred hhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh--------
Confidence 9999 99999999999999999999999999998 899999999999999999999999999999998621
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhh
Q 003231 757 EKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAA 803 (837)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~p 803 (837)
..+|.+||+-|..++-.
T Consensus 374 ------------------------------vhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 374 ------------------------------VHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred ------------------------------ccccHHHHHHHHHHHHh
Confidence 35888999999887754
No 32
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.5e-33 Score=317.80 Aligned_cols=250 Identities=41% Similarity=0.660 Sum_probs=223.2
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|++|+|++++++.|.+++..|+.+++.|...+..+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc--hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG--EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
|+|..+..++.+|..++...|+||||||+|.+++.+.... ......+.+..++..+++... ..+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence 9999999999999999999999999999999987664422 123345566677777777643 345999999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
+|++++| ||+..|.|+.|+.++|.+||+.++....+ .++++..+|..++||+|+||.++|++|++.|+++.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------ 356 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------ 356 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999998 99999999999999999999999988877 67999999999999999999999999999998741
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccccc
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASE 808 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~ 808 (837)
...++++||.+|+++++++....
T Consensus 357 --------------------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 --------------------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 13589999999999999988755
No 33
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=323.78 Aligned_cols=226 Identities=43% Similarity=0.660 Sum_probs=212.0
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
...++|.|+.|.+++|+.+.+.+.. +++|.-|...+.+-|+|+||+||||||||.|||++|.+.+.||+.++.++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4578999999999999999999988 999999998888999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCC--cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR--VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~--~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
++|-....+|.+|..|++++||||||||||.+...|.. .+.+....+.+|+++..||+.. .+..|+||++||+|+.
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpdV 300 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPDV 300 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCccc
Confidence 99999999999999999999999999999999887743 3566677789999999999986 3456999999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~ 747 (837)
+|++++| |||+.|.++.||...|++|++.++++..+ .++++..+|+.|.||+|+||.+++++|+..|+++-
T Consensus 301 lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n 374 (596)
T COG0465 301 LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN 374 (596)
T ss_pred chHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc
Confidence 9999999 99999999999999999999999999888 79999999999999999999999999999999864
No 34
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=9.8e-33 Score=320.96 Aligned_cols=268 Identities=39% Similarity=0.580 Sum_probs=229.4
Q ss_pred CCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 517 ANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 517 ~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
...+.++|+||+|++++++.+.+++.. +++++.|...+..+++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 335578999999999999999998887 8999999888888999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC
Q 003231 597 SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP 674 (837)
Q Consensus 597 s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~ 674 (837)
+.+.|.....++.+|..|+..+|+||||||||.+...+... +......+++++|+..|+++... .+++||+|||++
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 99999999999999999999999999999999998766542 23445567889999999987543 359999999999
Q ss_pred CCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003231 675 FDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEE 751 (837)
Q Consensus 675 ~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~ 751 (837)
+.+|++++| ||+..+.++.|+.++|.+|++.++..... .+.++..+|..+.||+++||.++|++|+..++++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~---- 279 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN---- 279 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999988776 68899999999999999999999999988776531
Q ss_pred hhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCC
Q 003231 752 RKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEG 825 (837)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~ 825 (837)
.++++.+||..|+.++..........+.+...|...+.+.
T Consensus 280 ----------------------------------~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEa 319 (495)
T TIGR01241 280 ----------------------------------KTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEA 319 (495)
T ss_pred ----------------------------------CCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 1367888888888877665544444455665666555543
No 35
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=286.30 Aligned_cols=225 Identities=38% Similarity=0.640 Sum_probs=209.9
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW 599 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~ 599 (837)
+.+++.|++|..+.++.|++.+..|+.+|+.|-..++.|++++|+|||||||||.+||++|+..++-|+++-.++++.+|
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky 251 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 251 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCC
Q 003231 600 FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDL 677 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~L 677 (837)
+|+...-++.+|+.|+....||||+||||.+.+.|... +......+.+-++++++|++... .++-|+++||+|+.|
T Consensus 252 vgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpdtl 329 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPDTL 329 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCCCc
Confidence 99999999999999999999999999999999888553 44455667778889999998544 459999999999999
Q ss_pred cHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003231 678 DEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 678 d~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r 746 (837)
||+++| |+++.++|.+|+.+.|..|++.+.+...+ .++-++.||.++..-+|++|+.+|.+|.+.|++.
T Consensus 330 dpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 330 DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred CHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH
Confidence 999999 99999999999999999999999988888 7899999999999999999999999999999885
No 36
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1e-32 Score=312.08 Aligned_cols=245 Identities=36% Similarity=0.614 Sum_probs=219.0
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW 599 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~ 599 (837)
+.++|+||+|++++++.|.+++..|+.+|++|...+..++.++||+||||||||++|+++|++++.+|+.+.++++..+|
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCC
Q 003231 600 FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDL 677 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~L 677 (837)
.|+....++.+|..|....|+||||||||.++..+... +......+.+.+++..+++.... .++.||+|||+++.+
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIESL 335 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHHh
Confidence 99999999999999999999999999999998766432 22333445667788888886433 358999999999999
Q ss_pred cHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003231 678 DEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKK 754 (837)
Q Consensus 678 d~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~ 754 (837)
|++++| ||++.|+|+.|+.++|.+||+.++.+..+ .++++..++..++||+|+||.++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 999997 99999999999999999999999998887 78999999999999999999999999999998752
Q ss_pred hHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhc
Q 003231 755 DMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAAS 804 (837)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps 804 (837)
...++.+||..|++++...
T Consensus 409 -------------------------------r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 409 -------------------------------RMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred -------------------------------CCccCHHHHHHHHHHHHhh
Confidence 1358999999999998543
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.2e-32 Score=331.80 Aligned_cols=289 Identities=39% Similarity=0.642 Sum_probs=250.0
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW 599 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~ 599 (837)
+.++|+||+|++++++.|.+++..++.+|++|+..++.+++++||+||||||||++|+++|++++.+|+.++++++.+++
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcH
Q 003231 600 FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDE 679 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~ 679 (837)
.|..+..++.+|..+....|+||||||||.+++.+... ..+...++.+.|+..++++.. ..+++||++||+++.+|+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCH
Confidence 99999999999999999999999999999999876543 233446788899999988743 345899999999999999
Q ss_pred HHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 003231 680 AIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDM 756 (837)
Q Consensus 680 aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~ 756 (837)
++++ ||+..+.++.|+.++|.+||+.+.+...+ .+.+++.++..+.||+++||..+|+.|++.++++.+...... .
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~-~ 408 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKIN-F 408 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccc-c
Confidence 9998 99999999999999999999988887776 688999999999999999999999999999998875421100 0
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCCCcccc
Q 003231 757 EKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKK 830 (837)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~~~r~~ 830 (837)
. .. ...........++++||..|+..++|+..++.....|.+.|+|++|++.+|++
T Consensus 409 -----~-----~~--------~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~ 464 (733)
T TIGR01243 409 -----E-----AE--------EIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQE 464 (733)
T ss_pred -----c-----cc--------cccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHH
Confidence 0 00 00011123356899999999999999998888888899999999999988875
No 38
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=1.1e-30 Score=292.81 Aligned_cols=243 Identities=43% Similarity=0.692 Sum_probs=213.8
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|+||+|++++++.|.+++..|+.+++.|...+..+++++||+||||||||++|+++|++++.+|+.+.++++...
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc--hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG--EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
++|.....++.+|..++...|+||||||+|.+...+.... ......+.+..++..+++.... .++.||+|||+++.
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRPDI 273 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChhh
Confidence 9999999999999999999999999999999986654321 1223345566777777765332 45899999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
+++++++ ||++.+.|+.|+.++|.+|++.++....+ .++++..++..++||+|+||.++|++|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 9999998 99999999999999999999999988777 56899999999999999999999999999998751
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHh
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQV 801 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v 801 (837)
...++.+||..|++++
T Consensus 348 --------------------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------------------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------------------CCccCHHHHHHHHHHh
Confidence 1358999999999875
No 39
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=2e-30 Score=297.16 Aligned_cols=220 Identities=32% Similarity=0.541 Sum_probs=185.3
Q ss_pred CCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 003231 517 ANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS---------- 586 (837)
Q Consensus 517 ~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~---------- 586 (837)
...+.++|++|+|++.+++.+++.+..|+.++++|...++.+++++|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3445789999999999999999999999999999999999999999999999999999999999998654
Q ss_pred EEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCC
Q 003231 587 FINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNG 662 (837)
Q Consensus 587 ~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 662 (837)
|+.+..+++.++|.|+.+..++.+|..++.. .|+||||||+|.+++.|......+..++++++|+..||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--
Confidence 6677888899999999999999999998764 6899999999999987765444555678889999999998543
Q ss_pred ceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 663 ERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 663 ~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
.+++||+|||+++.|||+++| ||+..|+|+.|+.++|.+||+.++.....-+.+ +..+.|++++++..+|++|.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~----l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDAD----LAEFDGDREATAAALIQRAV 407 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHH----HHHhcCCCHHHHHHHHHHHH
Confidence 459999999999999999999 999999999999999999999998753111111 23356677777777776664
Q ss_pred HH
Q 003231 741 YR 742 (837)
Q Consensus 741 ~~ 742 (837)
..
T Consensus 408 ~~ 409 (512)
T TIGR03689 408 DH 409 (512)
T ss_pred HH
Confidence 43
No 40
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=9.9e-31 Score=308.56 Aligned_cols=226 Identities=41% Similarity=0.622 Sum_probs=202.8
Q ss_pred CCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 003231 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS 597 (837)
Q Consensus 518 ~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s 597 (837)
....++|+||+|++++++.+.+++.. +++++.|...+..+++++||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34467999999999999999998877 88999998888889999999999999999999999999999999999999998
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCC--cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC
Q 003231 598 KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR--VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF 675 (837)
Q Consensus 598 ~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~--~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~ 675 (837)
.+.|.....++.+|..|+...||||||||||.+...+.. .+.+......++.|+..+++... +.+++||+|||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 888888889999999999999999999999999866543 22344556788889999998744 34599999999999
Q ss_pred CCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003231 676 DLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 676 ~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r 746 (837)
.+|++++| ||++.+.++.|+.++|.+||+.++....+ .+.++..+|..+.||+++||.++|++|+..++++
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999998 99999999999999999999999998766 7889999999999999999999999999988765
No 41
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-30 Score=269.71 Aligned_cols=233 Identities=35% Similarity=0.638 Sum_probs=206.4
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWF 600 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~ 600 (837)
.++|+.++|.-.+...+.+-+..|+.+|++|...+++||.+++||||||+|||.+|+++|..+|++|+.+.++.+.++|.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc--hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCc
Q 003231 601 GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG--EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLD 678 (837)
Q Consensus 601 G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld 678 (837)
|++...+++.|..|+.+.|||||+||||.+.+.+...+ ......+.+-+|++.|++.. ...+|-+|+|||+|+.|+
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd--~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD--TLHRVKTIMATNRPDTLD 285 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch--hcccccEEEecCCccccc
Confidence 99999999999999999999999999999998774432 23344455556667777763 335699999999999999
Q ss_pred HHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 003231 679 EAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKD 755 (837)
Q Consensus 679 ~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~ 755 (837)
|+|+| |+++.++.|.|+...|..|++.+...... .+++.+++.+.++||.|+|+++.|++|-+.++++.......++
T Consensus 286 paLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed 365 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHED 365 (388)
T ss_pred hhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHH
Confidence 99999 99999999999999999999887766655 6788999999999999999999999999998887544443333
No 42
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=2e-29 Score=300.27 Aligned_cols=226 Identities=42% Similarity=0.639 Sum_probs=202.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 003231 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS 597 (837)
Q Consensus 518 ~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s 597 (837)
......|+++.|.+.+++.+.+.+.. +..++.+...+...++++||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 44456899999999999999999887 66777776666677889999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCC--cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC
Q 003231 598 KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR--VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF 675 (837)
Q Consensus 598 ~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~--~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~ 675 (837)
.+.|.....++.+|..++..+||||||||+|.+...+.. .+.+....++++.++..||+... +..++||+|||+|+
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~ 301 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 301 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCChh
Confidence 999999999999999999999999999999999877654 23344566788999999998754 34599999999999
Q ss_pred CCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003231 676 DLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 676 ~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r 746 (837)
.+|++++| ||++.+.|+.|+.++|.+||+.++.+.++ .++++..+|+.+.||+|+||.++|++|+..|+++
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999998 99999999999999999999999998887 7899999999999999999999999999998864
No 43
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7e-30 Score=304.18 Aligned_cols=263 Identities=34% Similarity=0.535 Sum_probs=226.5
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTI 595 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l 595 (837)
.++|++|+|+++++..|++.+..|+.+|+.|....+.|++++||+||||||||..|+++|..+ .+.|+.-+..+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 569999999999999999999999999999999999999999999999999999999999988 466777888899
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC
Q 003231 596 TSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF 675 (837)
Q Consensus 596 ~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~ 675 (837)
.++|+|+.+..++.+|+.|+++.|+|||+||||-|++.|... ....+..++..|+..|||+... ..|+||++||+++
T Consensus 341 lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-qEqih~SIvSTLLaLmdGldsR--gqVvvigATnRpd 417 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-QEQIHASIVSTLLALMDGLDSR--GQVVVIGATNRPD 417 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-HHHhhhhHHHHHHHhccCCCCC--CceEEEcccCCcc
Confidence 999999999999999999999999999999999999988653 4445678999999999999654 3599999999999
Q ss_pred CCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003231 676 DLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEE 751 (837)
Q Consensus 676 ~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~ 751 (837)
.+||+++| ||++.++|++|+.+.|.+|+..+.++..- ...-+..||+.+.||.|+||++||.+|++.++++-..++
T Consensus 418 a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~ 497 (1080)
T KOG0732|consen 418 AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQI 497 (1080)
T ss_pred ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCee
Confidence 99999999 99999999999999999999988776543 667788999999999999999999999999999754433
Q ss_pred hhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccccc
Q 003231 752 RKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASE 808 (837)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~ 808 (837)
...+.. . ........+...||-.|+.++.|+..+.
T Consensus 498 y~s~~k---------l-------------~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 498 YSSSDK---------L-------------LIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred eccccc---------c-------------cccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 221100 0 0011122378889999999888888764
No 44
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=4.5e-28 Score=298.58 Aligned_cols=198 Identities=21% Similarity=0.254 Sum_probs=162.1
Q ss_pred cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc--------------------------------
Q 003231 552 KGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW-------------------------------- 599 (837)
Q Consensus 552 ~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~-------------------------------- 599 (837)
...+.+|++||||+||||||||+||+++|.++++||+.|+++++...+
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 455678999999999999999999999999999999999999988644
Q ss_pred ---------ccccHH--HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-cCCceEEE
Q 003231 600 ---------FGEDEK--NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-RNGERILV 667 (837)
Q Consensus 600 ---------~G~~e~--~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~~vlV 667 (837)
++..+. .++.+|+.|++.+||||||||||.+...... ...+++|+..|++... ....+|+|
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~-------~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN-------YLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc-------eehHHHHHHHhccccccCCCCCEEE
Confidence 112222 3788999999999999999999999764211 1246888889987632 23456999
Q ss_pred EEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhc--CC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 668 LAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKE--KV--EDLDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 668 IaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~--~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
|||||+|+.+|||++| |||+.|.++.|+..+|.+++..++... .+ ..++++.+|..|.||+|+||.+||++|+.
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999988654433 33 23679999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhH
Q 003231 742 RPVRELIQEERKKDM 756 (837)
Q Consensus 742 ~av~r~~~~~~~~~~ 756 (837)
.|+++....+...++
T Consensus 1856 iAirq~ks~Id~~~I 1870 (2281)
T CHL00206 1856 ISITQKKSIIDTNTI 1870 (2281)
T ss_pred HHHHcCCCccCHHHH
Confidence 999985444433333
No 45
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.8e-29 Score=275.14 Aligned_cols=255 Identities=31% Similarity=0.466 Sum_probs=213.4
Q ss_pred cccchHHHHH-HHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEeccccccccccccH
Q 003231 527 IGALNEIKES-LQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS-FINVSMSTITSKWFGEDE 604 (837)
Q Consensus 527 IiG~d~vk~~-L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~-~i~v~~s~l~s~~~G~~e 604 (837)
|+|++.-... .+++.....--|+..+..+.+..+|+|||||||||||.+||.|.+-+++. --.|+..++.++|+|+++
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE 302 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESE 302 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccH
Confidence 8899875544 44555555677888899999999999999999999999999999999753 444899999999999999
Q ss_pred HHHHHHHHHHHhc--------CCeEEEecccccccCCCCCcch-HHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC
Q 003231 605 KNVRALFTLAAKV--------SPTIIFVDEVDSMLGQRTRVGE-HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF 675 (837)
Q Consensus 605 ~~l~~lf~~A~~~--------~psVLfIDEID~L~~~r~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~ 675 (837)
.+++++|..|... .-.||++||||.+|.+|++..+ ...+..++|+|+.-|||...-+ +++||+-||+++
T Consensus 303 ~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN--NILVIGMTNR~D 380 (744)
T KOG0741|consen 303 ENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN--NILVIGMTNRKD 380 (744)
T ss_pred HHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh--cEEEEeccCchh
Confidence 9999999998532 2469999999999998877544 6678899999999999985544 499999999999
Q ss_pred CCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhc---CC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 003231 676 DLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKE---KV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELI 748 (837)
Q Consensus 676 ~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~---~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~ 748 (837)
.+|++++| ||...+++.+||+..|.+|++.+..+. +. .|+|+++||.+|..|||++|..|++.|...|+.|.+
T Consensus 381 lIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~v 460 (744)
T KOG0741|consen 381 LIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHV 460 (744)
T ss_pred hHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhh
Confidence 99999999 999999999999999999998876653 23 799999999999999999999999999999999986
Q ss_pred HHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccc
Q 003231 749 QEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFA 806 (837)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~ 806 (837)
....... .+........+|++||.+|+.+|+|++.
T Consensus 461 k~~~~~~-----------------------~~~~~~e~lkV~r~DFl~aL~dVkPAFG 495 (744)
T KOG0741|consen 461 KAGGKVE-----------------------VDPVAIENLKVTRGDFLNALEDVKPAFG 495 (744)
T ss_pred ccCccee-----------------------cCchhhhheeecHHHHHHHHHhcCcccC
Confidence 5431100 0011123356899999999999999996
No 46
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2.9e-27 Score=256.18 Aligned_cols=225 Identities=18% Similarity=0.216 Sum_probs=171.4
Q ss_pred ccccc-ccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 003231 523 TFADI-GALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFG 601 (837)
Q Consensus 523 ~fddI-iG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G 601 (837)
+|+.+ +|+--...-+..++....+ ......++++|.+++||||||||||++|+++|+++|++|+.++++++.++|+|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 67776 5554444444443322111 11122456899999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHh-----cCCeEEEecccccccCCCCCcchHHHHHHHH-HHHHHhhcccc----------ccCCceE
Q 003231 602 EDEKNVRALFTLAAK-----VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIK-NEFMTHWDGLL----------TRNGERI 665 (837)
Q Consensus 602 ~~e~~l~~lf~~A~~-----~~psVLfIDEID~L~~~r~~~~~~~~~~~i~-~~Ll~~ld~~~----------~~~~~~v 665 (837)
++++.++.+|..|+. .+||||||||||.+++.+.. ......++++ .+|++.||+.. .....+|
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~-~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT-TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC-CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 999999999999975 36999999999999998864 3344444554 79999988642 1334679
Q ss_pred EEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003231 666 LVLAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 666 lVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
+||+|||+|+.|+|+|+| ||++.+ ..|+.++|.+||+.++++.+++..++..|+..+.|-+-.---+|-...--.+
T Consensus 270 ~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 270 PIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred eEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 999999999999999999 999865 5799999999999999999888899999999988743211112222333445
Q ss_pred HHHHHHHHh
Q 003231 744 VRELIQEER 752 (837)
Q Consensus 744 v~r~~~~~~ 752 (837)
+++++.+..
T Consensus 348 v~~~i~~~g 356 (413)
T PLN00020 348 VRKWIAEVG 356 (413)
T ss_pred HHHHHHHhh
Confidence 555555543
No 47
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-26 Score=271.62 Aligned_cols=370 Identities=19% Similarity=0.236 Sum_probs=239.2
Q ss_pred HHHHHHHHHhh-cCCcEEEEEccchhHhhh-----cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC
Q 003231 254 QSLYKVLVSIT-ETSSVILYLRDVDKLLFQ-----SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP 327 (837)
Q Consensus 254 ~~L~~v~~~~~-~~~p~Ilfi~di~~~l~~-----~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~ 327 (837)
++|.+|+.++. ..+.+||||||+|-++.. ++++.|+|+++|.+ |.+.|||+||+++|.++.++|.+|.|||+
T Consensus 266 ~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r--g~l~~IGatT~e~Y~k~iekdPalErrw~ 343 (898)
T KOG1051|consen 266 ERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR--GGLWCIGATTLETYRKCIEKDPALERRWQ 343 (898)
T ss_pred HHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc--CCeEEEecccHHHHHHHHhhCcchhhCcc
Confidence 45666666654 457899999999996633 35899999999998 88999999999999999999999999997
Q ss_pred ceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCC--CChhHHhhcccCCCCCChhhHHHHHHHHHHhhh
Q 003231 328 YNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAAND--LECDDLGSICQADTMVLSNYIEEIVVSAISHHL 405 (837)
Q Consensus 328 ~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~--~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l 405 (837)
.+.|..|+.+....||.+. +.+|+.+|.+..... +....++++|+.++++|+.+|+.++++++....
T Consensus 344 -l~~v~~pS~~~~~~iL~~l----------~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~ 412 (898)
T KOG1051|consen 344 -LVLVPIPSVENLSLILPGL----------SERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKS 412 (898)
T ss_pred -eeEeccCcccchhhhhhhh----------hhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhh
Confidence 9999999999999999984 344555565655554 788999999999999999999999999998888
Q ss_pred hcCCCccc-cCC-ceeecHHhHHHHHHHhhhhhhccccccc-----------cccccccccccchhhhhhhccCCCCCCC
Q 003231 406 MDNEDPEY-RNG-KLVISSKSLSHGLSIFQECKRFGKDSLK-----------METNADGAKETGEEAVTAKTESKENPAS 472 (837)
Q Consensus 406 ~~~~~~~~-~~~-~~~i~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (837)
....-|.. .+- +-... ++.-+..++.. +++..++ .+..........+...........++..
T Consensus 413 ~~~~lP~wL~~~~~~~~~---~~~e~~~L~kk--~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~ 487 (898)
T KOG1051|consen 413 QAESLPPWLQNLERVDIK---LQDEISELQKK--WNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLD 487 (898)
T ss_pred hhhhCCHHHHhhhhhhhh---hHHHHHHHHHh--hhhhhccccccccccccccccccchhhhccchhHHhhhccccCCcc
Confidence 65555541 110 00000 11111212111 1100000 0000000000001011100000000000
Q ss_pred -cc-----------c-----------------------ccccccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCC
Q 003231 473 -ES-----------R-----------------------SEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPA 517 (837)
Q Consensus 473 -~~-----------~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~ 517 (837)
.. . .+.+....+...+++|..............+++.+..+
T Consensus 488 ~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~---- 563 (898)
T KOG1051|consen 488 RNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHER---- 563 (898)
T ss_pred cchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhh----
Confidence 00 0 00111111111112221111111111222344444444
Q ss_pred CCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 003231 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMST 594 (837)
Q Consensus 518 ~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~ 594 (837)
|+||+++...|.++|..... . .... +|...+||.||.|+|||-||+++|..+ .-.|+.++|++
T Consensus 564 ---------V~gQ~eAv~aIa~AI~~sr~--g-l~~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse 629 (898)
T KOG1051|consen 564 ---------VIGQDEAVAAIAAAIRRSRA--G-LKDP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE 629 (898)
T ss_pred ---------ccchHHHHHHHHHHHHhhhc--c-cCCC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhh
Confidence 89999999999999976321 1 1111 477889999999999999999999998 46799999996
Q ss_pred ccc---------ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCC---
Q 003231 595 ITS---------KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNG--- 662 (837)
Q Consensus 595 l~s---------~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~--- 662 (837)
+.. .|+|..+. ..+.+..++.+.+||+|||||+..+ .+++.|++.+|....+++
T Consensus 630 ~~evskligsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh~------------~v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 630 FQEVSKLIGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAHP------------DVLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred hhhhhhccCCCcccccchhH--HHHHHHHhcCCceEEEEechhhcCH------------HHHHHHHHHHhcCccccCCCc
Confidence 432 25666554 3688888999999999999998643 778888888988776654
Q ss_pred ----ceEEEEEecCC
Q 003231 663 ----ERILVLAATNR 673 (837)
Q Consensus 663 ----~~vlVIaTTN~ 673 (837)
.+++||+|+|.
T Consensus 696 ~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNV 710 (898)
T ss_pred EeeccceEEEEeccc
Confidence 46899999876
No 48
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-25 Score=237.76 Aligned_cols=234 Identities=16% Similarity=0.230 Sum_probs=194.4
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-+|||++++++ +..+..|.+++-.+|+||+++.-. =-..+++|||+|||+.++++||||.|++-+|.||=+=.+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~--GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS 219 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEEL--GIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS 219 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHc--CCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH
Confidence 3457999999999 999999999999999999994433 235789999999999999999999999999999999999
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
.|-.|+ -|+..
T Consensus 220 ElVqKY---iGEGa------------------------------------------------------------------ 230 (406)
T COG1222 220 ELVQKY---IGEGA------------------------------------------------------------------ 230 (406)
T ss_pred HHHHHH---hccch------------------------------------------------------------------
Confidence 987655 23321
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~ 295 (837)
.+|..||+++.+- .|+||||||||.+=..+ .+.--.+-.+|+
T Consensus 231 ---------------------------RlVRelF~lArek---aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ 280 (406)
T COG1222 231 ---------------------------RLVRELFELAREK---APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN 280 (406)
T ss_pred ---------------------------HHHHHHHHHHhhc---CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHH
Confidence 2889999999986 99999999999943222 111112224455
Q ss_pred hccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 296 KLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 296 ~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.|+| +|.||.| ||+++-+|.||.| ||-.+|++++|+.++|..||++|..+| .
T Consensus 281 qlDGFD~~~nvKVI~A-----TNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM----------------~ 339 (406)
T COG1222 281 QLDGFDPRGNVKVIMA-----TNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM----------------N 339 (406)
T ss_pred hccCCCCCCCeEEEEe-----cCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc----------------c
Confidence 5555 9999998 9999999999998 999999999999999999999976444 4
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHh
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
.+.+++...|+.+|-+ ++|++|..|.-.|--+++. +++-.|+++||..|++.+
T Consensus 340 l~~dvd~e~la~~~~g---~sGAdlkaictEAGm~AiR--------~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 340 LADDVDLELLARLTEG---FSGADLKAICTEAGMFAIR--------ERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred CccCcCHHHHHHhcCC---CchHHHHHHHHHHhHHHHH--------hccCeecHHHHHHHHHHH
Confidence 4667899999999999 9999999999999989974 555679999999999844
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.1e-25 Score=252.64 Aligned_cols=255 Identities=24% Similarity=0.339 Sum_probs=204.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~ 636 (837)
+-...+||+|+||||||++++++|+++|.+++.++|.++.....+.++.++...|..|+..+|+||||-++|.+...+++
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999755544
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC-Chh
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV-EDL 715 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~ 715 (837)
+ ...-....++.++. . ........+++||+||+..+.+++.+++.|..+|.++.|+.++|.+||+.++....+ .++
T Consensus 509 g-ed~rl~~~i~~~ls-~-e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v 585 (953)
T KOG0736|consen 509 G-EDARLLKVIRHLLS-N-EDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDV 585 (953)
T ss_pred c-hhHHHHHHHHHHHh-c-ccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHH
Confidence 2 22222223333333 1 222334457999999999999999999999999999999999999999999999988 789
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHH
Q 003231 716 DFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMR 795 (837)
Q Consensus 716 dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~ 795 (837)
.++.++.++.||+.+++..++..+-..+..++.... . .....++....-......++++||.
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~----l--------------~g~~~~~~~~~~~~~~~~l~~edf~ 647 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG----L--------------AGGLQEEDEGELCAAGFLLTEEDFD 647 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc----c--------------cccchhccccccccccceecHHHHH
Confidence 999999999999999999998877443333322111 0 0000111112223455789999999
Q ss_pred HHHHHhhhccc-ccccchhhhHHHHHhhcCCCcccccc
Q 003231 796 QAKNQVAASFA-SEGSVMNELKQWNDLYGEGGSRKKEQ 832 (837)
Q Consensus 796 ~Al~~v~ps~~-~~~~~~~~~~~W~digG~~~~r~~~~ 832 (837)
+|+.+++..++ +.|++.+|+|+|+||||++.+|+..+
T Consensus 648 kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIl 685 (953)
T KOG0736|consen 648 KALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEIL 685 (953)
T ss_pred HHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHH
Confidence 99999999997 89999999999999999999997743
No 50
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.2e-23 Score=219.69 Aligned_cols=254 Identities=17% Similarity=0.248 Sum_probs=199.6
Q ss_pred HHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhh
Q 003231 52 IEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAH 131 (837)
Q Consensus 52 ~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~ 131 (837)
+-+.|.+-|+. ++.+|.||++-+. ++.|.+|-||+..++..|+|++..+ ..=++|||.||++.+++|||||+|-
T Consensus 194 Lve~lerdIl~-~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~Gir---rPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 194 LVEALERDILQ-RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFKGIR---RPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred HHHHHHHHHhc-cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHhhcc---cccceeeeeCCCCCcHHHHHHHHHH
Confidence 33445555554 5678999999998 9999999999999999999877765 6789999999999999999999999
Q ss_pred hhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCC
Q 003231 132 FFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGS 211 (837)
Q Consensus 132 ~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (837)
+.|..|.++-++++..||
T Consensus 268 Ec~tTFFNVSsstltSKw-------------------------------------------------------------- 285 (491)
T KOG0738|consen 268 ECGTTFFNVSSSTLTSKW-------------------------------------------------------------- 285 (491)
T ss_pred hhcCeEEEechhhhhhhh--------------------------------------------------------------
Confidence 999999999999987665
Q ss_pred CCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc-----HHH
Q 003231 212 SFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS-----QRF 286 (837)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-----~~~ 286 (837)
-++...+|.-||+++..- .|.+|||||||.+-.++ -++
T Consensus 286 ----------------------------------RGeSEKlvRlLFemARfy---APStIFiDEIDslcs~RG~s~EHEa 328 (491)
T KOG0738|consen 286 ----------------------------------RGESEKLVRLLFEMARFY---APSTIFIDEIDSLCSQRGGSSEHEA 328 (491)
T ss_pred ----------------------------------ccchHHHHHHHHHHHHHh---CCceeehhhHHHHHhcCCCccchhH
Confidence 333444888899999998 99999999999955433 124
Q ss_pred HHHHHHHH-HhccC------C---EEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhh
Q 003231 287 YNLLDKLL-KKLSG------S---VLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQ 356 (837)
Q Consensus 287 ~~~lk~~l-~~l~g------~---v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~ 356 (837)
..-||..| -.++| + |.|+.| ||=+.|+|+||.|||+++|-|++|+.++|-..++..
T Consensus 329 SRRvKsELLvQmDG~~~t~e~~k~VmVLAA-----TN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~--------- 394 (491)
T KOG0738|consen 329 SRRVKSELLVQMDGVQGTLENSKVVMVLAA-----TNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKIL--------- 394 (491)
T ss_pred HHHHHHHHHHHhhccccccccceeEEEEec-----cCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHh---------
Confidence 44444332 12222 3 678877 888999999999999999999999999999999974
Q ss_pred cccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCC----Ccccc---CCce--eecHHhHHH
Q 003231 357 FQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNE----DPEYR---NGKL--VISSKSLSH 427 (837)
Q Consensus 357 ~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~----~~~~~---~~~~--~i~~~~~~~ 427 (837)
+..+-..+.+...+|.+.... |||++|-.+.+.|+-+.+.+.. +-+++ .+.+ -|.++||+.
T Consensus 395 -------l~~~~~~~~~~~~~lae~~eG---ySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~ 464 (491)
T KOG0738|consen 395 -------LRSVELDDPVNLEDLAERSEG---YSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEE 464 (491)
T ss_pred -------hccccCCCCccHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHH
Confidence 344666777888899998888 9999999999888777665321 11111 2223 388999999
Q ss_pred HHHHhhh
Q 003231 428 GLSIFQE 434 (837)
Q Consensus 428 ~l~~~~~ 434 (837)
|+...++
T Consensus 465 Al~~v~p 471 (491)
T KOG0738|consen 465 ALRKVRP 471 (491)
T ss_pred HHHHcCc
Confidence 9985543
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3e-21 Score=225.15 Aligned_cols=254 Identities=22% Similarity=0.273 Sum_probs=205.4
Q ss_pred CCCChHHHHHHHHhc----ccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhH
Q 003231 45 EGVSGEQIEKELMRQ----VLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAEL 120 (837)
Q Consensus 45 ~~~~~~~~~~~~~~~----vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~ 120 (837)
-.++.+.+++.+.+. .+.-.+-.|+|++++++ +..|..|.+++-..++++++ |..-.-..+++|||+||+++
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl--~~~k~~l~e~v~~~~~~~e~--~~~~~~~~~~giLl~GpPGt 287 (494)
T COG0464 212 IGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGL--EEAKEELKEAIETPLKRPEL--FRKLGLRPPKGVLLYGPPGT 287 (494)
T ss_pred ccccHHHHHHHHHhcCcccccccCCCCcceehhhcH--HHHHHHHHHHHHhHhhChHH--HHhcCCCCCCeeEEECCCCC
Confidence 478888888888875 44567778999999998 99999999999999999998 33323356669999999999
Q ss_pred HHHHHHHHHhhhhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCc
Q 003231 121 YQQMLAKALAHFFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSN 200 (837)
Q Consensus 121 yq~~LakALA~~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (837)
+++|||||+|++.+++|+.++..++..|| .|++
T Consensus 288 GKT~lAkava~~~~~~fi~v~~~~l~sk~---vGes-------------------------------------------- 320 (494)
T COG0464 288 GKTLLAKAVALESRSRFISVKGSELLSKW---VGES-------------------------------------------- 320 (494)
T ss_pred CHHHHHHHHHhhCCCeEEEeeCHHHhccc---cchH--------------------------------------------
Confidence 99999999999999999999999887665 4443
Q ss_pred cccccccccCCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHh
Q 003231 201 VDLKSRCMEGSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLL 280 (837)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l 280 (837)
...|..+|..+... .|+||||||+|+++
T Consensus 321 -------------------------------------------------ek~ir~~F~~A~~~---~p~iiFiDEiDs~~ 348 (494)
T COG0464 321 -------------------------------------------------EKNIRELFEKARKL---APSIIFIDEIDSLA 348 (494)
T ss_pred -------------------------------------------------HHHHHHHHHHHHcC---CCcEEEEEchhhhh
Confidence 33788899988866 99999999999998
Q ss_pred hhcH--------HHHHHHHHHHHhc--cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHH
Q 003231 281 FQSQ--------RFYNLLDKLLKKL--SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 281 ~~~~--------~~~~~lk~~l~~l--~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
.++. +..+.+-..++.+ ..+|+|||+ +|+++.+|+|+.| ||...|.|++|+.++|+.||+.++
T Consensus 349 ~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~a-----TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~ 423 (494)
T COG0464 349 SGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAA-----TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHL 423 (494)
T ss_pred ccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEec-----CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHh
Confidence 6652 4444444444211 237999998 9999999999999 999999999999999999999976
Q ss_pred HHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHH
Q 003231 349 EEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHG 428 (837)
Q Consensus 349 ~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 428 (837)
.+.... ...+++...|..++.. +++++|..+++.|+...+.... ...|+.+||..+
T Consensus 424 ~~~~~~--------------~~~~~~~~~l~~~t~~---~sgadi~~i~~ea~~~~~~~~~-------~~~~~~~~~~~a 479 (494)
T COG0464 424 RDKKPP--------------LAEDVDLEELAEITEG---YSGADIAALVREAALEALREAR-------RREVTLDDFLDA 479 (494)
T ss_pred cccCCc--------------chhhhhHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHhc-------cCCccHHHHHHH
Confidence 432221 2345677777776666 8999999999999999987664 223899999999
Q ss_pred HH
Q 003231 429 LS 430 (837)
Q Consensus 429 l~ 430 (837)
+.
T Consensus 480 ~~ 481 (494)
T COG0464 480 LK 481 (494)
T ss_pred HH
Confidence 98
No 52
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-21 Score=220.11 Aligned_cols=261 Identities=23% Similarity=0.266 Sum_probs=207.7
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccc
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMSTITSKWF 600 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s~l~s~~~ 600 (837)
.|++-...+|+...+....| .-...++||.||+|+|||.||++++.++ -+++..++|+.+....+
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45666677777665533332 1234679999999999999999999998 46778899999988877
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEecccccccCCC-CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcH
Q 003231 601 GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR-TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDE 679 (837)
Q Consensus 601 G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r-~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~ 679 (837)
....+.+..+|..+.+++|+||++|++|.|++.. ..+++.......+..+++.+-....+.+..+.+|+|.+....++|
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 7778889999999999999999999999998733 223333444455566665555555667778999999999999999
Q ss_pred HHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 003231 680 AIIR--RFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKD 755 (837)
Q Consensus 680 aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~ 755 (837)
-+.+ +|+.++.++.|+..+|.+||+.++.+... ...|++-++..|+||...||.-++.+|.+.|+.+.+.
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris------ 630 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS------ 630 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc------
Confidence 8877 89999999999999999999999988763 3445555999999999999999999999988843211
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhh-HHHHHhhcCCCcccc
Q 003231 756 MEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNEL-KQWNDLYGEGGSRKK 830 (837)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~-~~W~digG~~~~r~~ 830 (837)
....-+|.+||.+|++.+.|+..+......+. ..|+||||+...|+-
T Consensus 631 ----------------------------~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~ 678 (952)
T KOG0735|consen 631 ----------------------------NGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKV 678 (952)
T ss_pred ----------------------------cCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHH
Confidence 11126899999999999999999877666665 899999999887753
No 53
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.6e-21 Score=216.77 Aligned_cols=246 Identities=20% Similarity=0.283 Sum_probs=194.1
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccc
Q 003231 67 KTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 67 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~ 146 (837)
+|.|++||+. +..|..|.+++..++-.+++ |+ +|.+..+++||.||+.-+++||+||+|-+.+|.|..+-.+.+.
T Consensus 149 ~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~--F~-glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 149 NVGWDDIAGL--EDAKQSLKEAVILPLLRPDL--FL-GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred cccccCCcch--hhHHHHhhhhhhhcccchHh--hh-ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 5889999999 99999999999999999887 22 4778999999999999999999999999999999999888887
Q ss_pred hhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccc
Q 003231 147 LKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSS 226 (837)
Q Consensus 147 ~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (837)
.||
T Consensus 224 sK~----------------------------------------------------------------------------- 226 (428)
T KOG0740|consen 224 SKY----------------------------------------------------------------------------- 226 (428)
T ss_pred hhc-----------------------------------------------------------------------------
Confidence 554
Q ss_pred ccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc------------HHHHHHHHHHH
Q 003231 227 ISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS------------QRFYNLLDKLL 294 (837)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~------------~~~~~~lk~~l 294 (837)
.++...+|.+||+|+... ||.|+||||||++|..+ ++|...|....
T Consensus 227 -------------------~Ge~eK~vralf~vAr~~---qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~ 284 (428)
T KOG0740|consen 227 -------------------VGESEKLVRALFKVARSL---QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN 284 (428)
T ss_pred -------------------cChHHHHHHHHHHHHHhc---CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcccc
Confidence 333445999999999999 99999999999999765 45777777777
Q ss_pred HhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCC
Q 003231 295 KKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLE 374 (837)
Q Consensus 295 ~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~ 374 (837)
..-.++|++||+ +|++.++|+|+.|||+..+.|++|+.+.|..+|+++|.++ .+.-...++..+ +..+.|++
T Consensus 285 s~~~drvlviga-----TN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~-~~~l~~~d~~~l--~~~Tegys 356 (428)
T KOG0740|consen 285 SAPDDRVLVIGA-----TNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ-PNGLSDLDISLL--AKVTEGYS 356 (428)
T ss_pred CCCCCeEEEEec-----CCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC-CCCccHHHHHHH--HHHhcCcc
Confidence 776779999998 9999999999999999999999999999999999998887 332233444444 56677888
Q ss_pred hhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 375 CDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 375 ~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
..|+-++|+.=.+-+...+... -.+.+-...+ ..-|+..||+.++...++
T Consensus 357 gsdi~~l~kea~~~p~r~~~~~--~~~~~~~~~~--------~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 357 GSDITALCKEAAMGPLRELGGT--TDLEFIDADK--------IRPITYPDFKNAFKNIKP 406 (428)
T ss_pred cccHHHHHHHhhcCchhhcccc--hhhhhcchhc--------cCCCCcchHHHHHHhhcc
Confidence 8888888877444333333322 0122211111 123566799998885543
No 54
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=1.2e-20 Score=204.65 Aligned_cols=214 Identities=17% Similarity=0.256 Sum_probs=161.4
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCC---CCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecccc
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLK---PCRGILLFGPPGTGKTMLAKAIANEA-------GASFINVSMSTI 595 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~---p~~~iLL~GPpGtGKT~LAralA~el-------g~~~i~v~~s~l 595 (837)
+++|++++|++|.+++.. +..++.+...+.. +..++||+||||||||++|+++|..+ ..+++.++++++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 599999999999998876 3444544433333 34469999999999999999999876 236999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC-
Q 003231 596 TSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP- 674 (837)
Q Consensus 596 ~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~- 674 (837)
.+.|+|+++.....+|+.+. ++||||||++.+...+.. ........+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 99999988877777777754 489999999998653321 223456677777777653 2347777777542
Q ss_pred ----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHH----c--CCCC-HHHHHHHHHHHHH
Q 003231 675 ----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAM----T--EGYS-GSDLKNLCVTAAY 741 (837)
Q Consensus 675 ----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~----t--~G~s-g~DL~~L~~~Aa~ 741 (837)
..++|++++||+..|.|+.++.+++.+|++.++.+... ++.....+... . +.|. ++++++++..|..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 24569999999999999999999999999999987654 44444444443 1 3344 7999999999999
Q ss_pred HHHHHHHHH
Q 003231 742 RPVRELIQE 750 (837)
Q Consensus 742 ~av~r~~~~ 750 (837)
+-..|+...
T Consensus 253 ~~~~r~~~~ 261 (287)
T CHL00181 253 RQANRIFES 261 (287)
T ss_pred HHHHHHHcC
Confidence 888887543
No 55
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.5e-20 Score=204.20 Aligned_cols=238 Identities=18% Similarity=0.234 Sum_probs=186.2
Q ss_pred HHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCC
Q 003231 56 LMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFES 135 (837)
Q Consensus 56 ~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a 135 (837)
+...|.|.+.++|+|++.-+- |+.|..|-|.+- .||.|. ||++==-..+++|||.|||+.++++||||.|.+-|+
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 556788888999999999998 999999999775 577664 577633458999999999999999999999999999
Q ss_pred eEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCc
Q 003231 136 KLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLP 215 (837)
Q Consensus 136 ~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (837)
+|.---.+.|- .| |+
T Consensus 364 PFF~~sGSEFd--------------------------Em--~V------------------------------------- 378 (752)
T KOG0734|consen 364 PFFYASGSEFD--------------------------EM--FV------------------------------------- 378 (752)
T ss_pred CeEeccccchh--------------------------hh--hh-------------------------------------
Confidence 98755555442 22 00
Q ss_pred ccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc---H---HHHHH
Q 003231 216 KHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS---Q---RFYNL 289 (837)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~---~---~~~~~ 289 (837)
+..-.=|..||.-+..- .||||||||||. +.+. . .+-.-
T Consensus 379 -------------------------------GvGArRVRdLF~aAk~~---APcIIFIDEiDa-vG~kR~~~~~~y~kqT 423 (752)
T KOG0734|consen 379 -------------------------------GVGARRVRDLFAAAKAR---APCIIFIDEIDA-VGGKRNPSDQHYAKQT 423 (752)
T ss_pred -------------------------------cccHHHHHHHHHHHHhc---CCeEEEEechhh-hcccCCccHHHHHHHH
Confidence 00111455677777664 999999999999 5442 1 23345
Q ss_pred HHHHHHhccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchh
Q 003231 290 LDKLLKKLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKN 362 (837)
Q Consensus 290 lk~~l~~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~ 362 (837)
+..+|..++| +|.|||| +|.+.+.|+||+| ||-.+|.|+.||..+|..||+.+|
T Consensus 424 lNQLLvEmDGF~qNeGiIvigA-----TNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl-------------- 484 (752)
T KOG0734|consen 424 LNQLLVEMDGFKQNEGIIVIGA-----TNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL-------------- 484 (752)
T ss_pred HHHHHHHhcCcCcCCceEEEec-----cCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH--------------
Confidence 6677887777 8999998 8999999999998 999999999999999999999864
Q ss_pred HHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 363 HIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 363 ~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
.++....+++..=++.=+-. |+|++++.+|-.|+-++-.++. -.|+|++|+.|=+
T Consensus 485 --~ki~~~~~VD~~iiARGT~G---FsGAdLaNlVNqAAlkAa~dga--------~~VtM~~LE~akD 539 (752)
T KOG0734|consen 485 --SKIPLDEDVDPKIIARGTPG---FSGADLANLVNQAALKAAVDGA--------EMVTMKHLEFAKD 539 (752)
T ss_pred --hcCCcccCCCHhHhccCCCC---CchHHHHHHHHHHHHHHHhcCc--------ccccHHHHhhhhh
Confidence 33555656666666666666 9999999999988888765443 4589999998866
No 56
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=3.3e-20 Score=198.89 Aligned_cols=216 Identities=17% Similarity=0.227 Sum_probs=159.5
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCC---CCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLK---PCRGILLFGPPGTGKTMLAKAIANEA-------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~---p~~~iLL~GPpGtGKT~LAralA~el-------g~~~i~v~~ 592 (837)
.+++++|++++|+.|++++.++..+..... .+.. ...+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~-~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKE-EGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 356799999999999998877533322222 2222 34579999999999999999999875 347899999
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecC
Q 003231 593 STITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATN 672 (837)
Q Consensus 593 s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN 672 (837)
+++.+.++|+....++.+|..+. ++||||||+|.|.... ........++.++..|+.. ...+++|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN----RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc----CCCEEEEecCC
Confidence 99999999999998888888764 4899999999986421 1123345566777777653 23355555543
Q ss_pred CC-----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHc-------C--CCCHHHHHHHH
Q 003231 673 RP-----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMT-------E--GYSGSDLKNLC 736 (837)
Q Consensus 673 ~~-----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t-------~--G~sg~DL~~L~ 736 (837)
.. ..++|++++||+..+.|+.++.+++.+|++.++..... ++..+..++... . .-.++.+++++
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 32 24688999999888999999999999999999987654 555566664432 1 23578889999
Q ss_pred HHHHHHHHHHHHHH
Q 003231 737 VTAAYRPVRELIQE 750 (837)
Q Consensus 737 ~~Aa~~av~r~~~~ 750 (837)
..|..+...|++.+
T Consensus 232 e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 232 EKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHHHHHHHhcc
Confidence 88888887776644
No 57
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.83 E-value=7.4e-20 Score=210.52 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=180.7
Q ss_pred ccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEE
Q 003231 60 VLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLL 139 (837)
Q Consensus 60 vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ 139 (837)
++.-...+++|+++.++ ++.|..|....-.+..+ ...|+ + +.+++|||+||+++++++||||+|++++++|+.
T Consensus 217 ~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~~--~~~~g--l-~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~ 289 (489)
T CHL00195 217 ILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSKQ--ASNYG--L-PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR 289 (489)
T ss_pred cccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhHH--HHhcC--C-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34444567899999998 99999888754322211 12233 3 578999999999999999999999999999999
Q ss_pred eeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCccccc
Q 003231 140 LDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRR 219 (837)
Q Consensus 140 ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (837)
+|...+..++ .|+
T Consensus 290 l~~~~l~~~~---vGe---------------------------------------------------------------- 302 (489)
T CHL00195 290 LDVGKLFGGI---VGE---------------------------------------------------------------- 302 (489)
T ss_pred EEhHHhcccc---cCh----------------------------------------------------------------
Confidence 9987765332 122
Q ss_pred CCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc---------HHHHHHH
Q 003231 220 NASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS---------QRFYNLL 290 (837)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~---------~~~~~~l 290 (837)
....+..+|+.+... +|+||||||||+++.+. .+..+.|
T Consensus 303 -----------------------------se~~l~~~f~~A~~~---~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~l 350 (489)
T CHL00195 303 -----------------------------SESRMRQMIRIAEAL---SPCILWIDEIDKAFSNSESKGDSGTTNRVLATF 350 (489)
T ss_pred -----------------------------HHHHHHHHHHHHHhc---CCcEEEehhhhhhhccccCCCCchHHHHHHHHH
Confidence 222556677777665 99999999999988642 2233333
Q ss_pred HHHHHhccCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 291 DKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 291 k~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
-..+.....+|+|||+ +|+...+|++|.| ||...|.|++|+.++|..||+.++.+....
T Consensus 351 L~~l~~~~~~V~vIaT-----TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~-------------- 411 (489)
T CHL00195 351 ITWLSEKKSPVFVVAT-----ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK-------------- 411 (489)
T ss_pred HHHHhcCCCceEEEEe-----cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC--------------
Confidence 3344444568999998 8889999999998 999999999999999999999987553210
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
...++++..|+..+.+ |++++|+.++..|+..++..+. .++.+||..++..+.+
T Consensus 412 ~~~~~dl~~La~~T~G---fSGAdI~~lv~eA~~~A~~~~~---------~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 412 SWKKYDIKKLSKLSNK---FSGAEIEQSIIEAMYIAFYEKR---------EFTTDDILLALKQFIP 465 (489)
T ss_pred cccccCHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHcCC---------CcCHHHHHHHHHhcCC
Confidence 1135678899999999 9999999999999988875432 2788999999985554
No 58
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=5.4e-20 Score=199.44 Aligned_cols=213 Identities=16% Similarity=0.237 Sum_probs=163.3
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCC---CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecccc
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLK---PCRGILLFGPPGTGKTMLAKAIANEAG-------ASFINVSMSTI 595 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~---p~~~iLL~GPpGtGKT~LAralA~elg-------~~~i~v~~s~l 595 (837)
+++|++++|++|.+++.. +..++.+...+.. |..++||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 499999999999998887 5566666544444 445899999999999999999998772 37999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC-
Q 003231 596 TSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP- 674 (837)
Q Consensus 596 ~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~- 674 (837)
.+.++|.++..++.+|+.+. ++||||||++.|.+.+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 99999998888888888764 389999999998653321 223345667777777643 2457777776542
Q ss_pred ----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHc------CC-CCHHHHHHHHHHHHH
Q 003231 675 ----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMT------EG-YSGSDLKNLCVTAAY 741 (837)
Q Consensus 675 ----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t------~G-~sg~DL~~L~~~Aa~ 741 (837)
..++|++++||+..|.|+.++.+++..|++.++.+... ++..+..+.... +. -+++++++++..|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 23589999999999999999999999999999988654 555555555542 21 247999999999988
Q ss_pred HHHHHHHH
Q 003231 742 RPVRELIQ 749 (837)
Q Consensus 742 ~av~r~~~ 749 (837)
+...|+..
T Consensus 252 ~~~~r~~~ 259 (284)
T TIGR02880 252 RQANRLFC 259 (284)
T ss_pred HHHHHHhc
Confidence 88887754
No 59
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.4e-21 Score=197.50 Aligned_cols=191 Identities=20% Similarity=0.299 Sum_probs=159.8
Q ss_pred hHHHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHH
Q 003231 49 GEQIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKA 128 (837)
Q Consensus 49 ~~~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakA 128 (837)
.-.++..|...||- +.=+|-|++.-++ |..|.+|-+|+..++|.|.++...+ ..=++|||+||++.++-.||||
T Consensus 112 ~kKLr~~L~sAIv~-EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtGkR---~PwrgiLLyGPPGTGKSYLAKA 185 (439)
T KOG0739|consen 112 KKKLRSALNSAIVR-EKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTGKR---KPWRGILLYGPPGTGKSYLAKA 185 (439)
T ss_pred HHHHHHHhhhhhhc-cCCCCchhhhccc--hhHHHHHHhheeecccchhhhcCCC---CcceeEEEeCCCCCcHHHHHHH
Confidence 44667777777775 4559999999999 9999999999999999999965554 3568999999999999999999
Q ss_pred HhhhhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccc
Q 003231 129 LAHFFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCM 208 (837)
Q Consensus 129 LA~~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (837)
.|.+-+..|..+.|+|+..|| -|+
T Consensus 186 VATEAnSTFFSvSSSDLvSKW---mGE----------------------------------------------------- 209 (439)
T KOG0739|consen 186 VATEANSTFFSVSSSDLVSKW---MGE----------------------------------------------------- 209 (439)
T ss_pred HHhhcCCceEEeehHHHHHHH---hcc-----------------------------------------------------
Confidence 999999999999999998766 333
Q ss_pred cCCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc-----
Q 003231 209 EGSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS----- 283 (837)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~----- 283 (837)
...||.-||+++.+- .|.||||||||. ++|+
T Consensus 210 ----------------------------------------SEkLVknLFemARe~---kPSIIFiDEiDs-lcg~r~enE 245 (439)
T KOG0739|consen 210 ----------------------------------------SEKLVKNLFEMAREN---KPSIIFIDEIDS-LCGSRSENE 245 (439)
T ss_pred ----------------------------------------HHHHHHHHHHHHHhc---CCcEEEeehhhh-hccCCCCCc
Confidence 344888999999986 999999999996 8775
Q ss_pred HHHHHHHHHHH-Hhc------cCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHH
Q 003231 284 QRFYNLLDKLL-KKL------SGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEE 350 (837)
Q Consensus 284 ~~~~~~lk~~l-~~l------~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~ 350 (837)
.++...+|..| -.+ ..+|+|+|+ +|-+.-.|.||.|||..+|-|++|+...|...++.||..
T Consensus 246 seasRRIKTEfLVQMqGVG~d~~gvLVLgA-----TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~ 314 (439)
T KOG0739|consen 246 SEASRRIKTEFLVQMQGVGNDNDGVLVLGA-----TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD 314 (439)
T ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEec-----CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCC
Confidence 33444444333 222 348999998 888999999999999999999999999999999987653
No 60
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.83 E-value=1.2e-19 Score=204.61 Aligned_cols=235 Identities=18% Similarity=0.290 Sum_probs=183.0
Q ss_pred CCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeec
Q 003231 63 GKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDV 142 (837)
Q Consensus 63 ~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~ 142 (837)
.+.-+|+|+++.++ +..|..|.+++-.+|+++++.+... + ..+++|||+||+++++++||||+|++.++.++.+..
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G-l-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG-I-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC-C-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 35668999999999 9999999999999999998733221 2 468999999999999999999999999999988877
Q ss_pred cccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCC
Q 003231 143 NDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNAS 222 (837)
Q Consensus 143 ~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (837)
+.|..++ .|
T Consensus 213 s~l~~k~---~g-------------------------------------------------------------------- 221 (398)
T PTZ00454 213 SEFVQKY---LG-------------------------------------------------------------------- 221 (398)
T ss_pred HHHHHHh---cc--------------------------------------------------------------------
Confidence 6654332 11
Q ss_pred CcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHH
Q 003231 223 DMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLL 294 (837)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l 294 (837)
+....+..+|..+..- +|+||||||+|.++..+ .+....+-.+|
T Consensus 222 -------------------------e~~~~lr~lf~~A~~~---~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL 273 (398)
T PTZ00454 222 -------------------------EGPRMVRDVFRLAREN---APSIIFIDEVDSIATKRFDAQTGADREVQRILLELL 273 (398)
T ss_pred -------------------------hhHHHHHHHHHHHHhc---CCeEEEEECHhhhccccccccCCccHHHHHHHHHHH
Confidence 1112456677776654 89999999999976432 12223344444
Q ss_pred Hhcc-----CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 003231 295 KKLS-----GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEV 367 (837)
Q Consensus 295 ~~l~-----g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~v 367 (837)
..+. ++|.+|++ +|+++.+|+||.| ||..+|+|++|+.++|..||+.++.+.
T Consensus 274 ~~ld~~~~~~~v~VI~a-----TN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~---------------- 332 (398)
T PTZ00454 274 NQMDGFDQTTNVKVIMA-----TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM---------------- 332 (398)
T ss_pred HHhhccCCCCCEEEEEe-----cCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC----------------
Confidence 4443 47889987 7889999999998 999999999999999999999865321
Q ss_pred hhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHh
Q 003231 368 LAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 368 l~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
-...+++..+|...+.+ |++++|..|+..|...++.++ +..|+.+||+.|+...
T Consensus 333 ~l~~dvd~~~la~~t~g---~sgaDI~~l~~eA~~~A~r~~--------~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 333 NLSEEVDLEDFVSRPEK---ISAADIAAICQEAGMQAVRKN--------RYVILPKDFEKGYKTV 386 (398)
T ss_pred CCCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHcC--------CCccCHHHHHHHHHHH
Confidence 12345677888888888 999999999999998887544 3359999999999854
No 61
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.82 E-value=2.8e-19 Score=202.10 Aligned_cols=236 Identities=17% Similarity=0.283 Sum_probs=183.4
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+..+++|++++++ |..+..|.+++..+++++++.+... -..+++|||+||+++++++||||+|++.+++++.++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g--~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG--IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 3457999999998 9999999999999999998743221 25578999999999999999999999999999999887
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
+|..++ .|+
T Consensus 200 ~l~~~~---~g~-------------------------------------------------------------------- 208 (389)
T PRK03992 200 ELVQKF---IGE-------------------------------------------------------------------- 208 (389)
T ss_pred HHhHhh---ccc--------------------------------------------------------------------
Confidence 775432 111
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~ 295 (837)
....+..+|+.+..- .|+||||||||.++..+ .+.-..+-.+|.
T Consensus 209 -------------------------~~~~i~~~f~~a~~~---~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 260 (389)
T PRK03992 209 -------------------------GARLVRELFELAREK---APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA 260 (389)
T ss_pred -------------------------hHHHHHHHHHHHHhc---CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHH
Confidence 112456677776654 89999999999976322 222223334444
Q ss_pred hcc-----CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 296 KLS-----GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 296 ~l~-----g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.+. ++|.|||+ +|+...+|++|.| ||...|+|++|+.++|.+||+.++.+ ..
T Consensus 261 ~ld~~~~~~~v~VI~a-----Tn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~----------------~~ 319 (389)
T PRK03992 261 EMDGFDPRGNVKIIAA-----TNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK----------------MN 319 (389)
T ss_pred hccccCCCCCEEEEEe-----cCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc----------------CC
Confidence 333 48999998 6778899999998 99999999999999999999986531 11
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
...+++..+|+..+.+ +++++|..++..|..+++..+. -.|+.+||..|+..++.
T Consensus 320 ~~~~~~~~~la~~t~g---~sgadl~~l~~eA~~~a~~~~~--------~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 320 LADDVDLEELAELTEG---ASGADLKAICTEAGMFAIRDDR--------TEVTMEDFLKAIEKVMG 374 (389)
T ss_pred CCCcCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHcCC--------CCcCHHHHHHHHHHHhc
Confidence 2235778889999988 9999999999999998886543 24899999999997655
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=6.4e-20 Score=188.10 Aligned_cols=199 Identities=23% Similarity=0.320 Sum_probs=132.0
Q ss_pred CCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 003231 501 PPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIA 580 (837)
Q Consensus 501 ~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA 580 (837)
..+..++.++||. +|+|++||++++..+.-++.....+. .+..++|||||||+|||+||+.||
T Consensus 9 ~~~~~l~~~lRP~---------~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 9 EEEAPLAERLRPK---------SLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp ---S-HHHHTS-S---------SCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHH
T ss_pred CcchhhHHhcCCC---------CHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHH
Confidence 3466789999998 89999999999999887776532222 356799999999999999999999
Q ss_pred HHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc
Q 003231 581 NEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR 660 (837)
Q Consensus 581 ~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~ 660 (837)
++++.+|..++++.+.. ...+..++.... ...||||||||++.. .+...|+..|++....
T Consensus 72 ~e~~~~~~~~sg~~i~k------~~dl~~il~~l~--~~~ILFIDEIHRlnk------------~~qe~LlpamEd~~id 131 (233)
T PF05496_consen 72 NELGVNFKITSGPAIEK------AGDLAAILTNLK--EGDILFIDEIHRLNK------------AQQEILLPAMEDGKID 131 (233)
T ss_dssp HHCT--EEEEECCC--S------CHHHHHHHHT----TT-EEEECTCCC--H------------HHHHHHHHHHHCSEEE
T ss_pred hccCCCeEeccchhhhh------HHHHHHHHHhcC--CCcEEEEechhhccH------------HHHHHHHHHhccCeEE
Confidence 99999999888755321 122333443332 457999999999842 3444556666544321
Q ss_pred -----C---------CceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHc
Q 003231 661 -----N---------GERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMT 724 (837)
Q Consensus 661 -----~---------~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t 724 (837)
. -.++.+|++|++...+.+.+++||.....+..++.++..+|++.-....++ ++....++|.++
T Consensus 132 iiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs 211 (233)
T PF05496_consen 132 IIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRS 211 (233)
T ss_dssp EEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCT
T ss_pred EEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhc
Confidence 1 135889999999999999999999877789999999999999987777666 788889999999
Q ss_pred CCCCHHHHHHHHH
Q 003231 725 EGYSGSDLKNLCV 737 (837)
Q Consensus 725 ~G~sg~DL~~L~~ 737 (837)
.| +++-..+|++
T Consensus 212 rG-tPRiAnrll~ 223 (233)
T PF05496_consen 212 RG-TPRIANRLLR 223 (233)
T ss_dssp TT-SHHHHHHHHH
T ss_pred CC-ChHHHHHHHH
Confidence 97 5654444443
No 63
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.1e-19 Score=192.21 Aligned_cols=230 Identities=26% Similarity=0.400 Sum_probs=177.1
Q ss_pred CCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHH
Q 003231 498 PEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAK 577 (837)
Q Consensus 498 ~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAr 577 (837)
|.......+...++..-....+..-.|+++|-.......|..+... ..+.. ....|.++||||||||||||++|+
T Consensus 328 pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~a-TaNTK----~h~apfRNilfyGPPGTGKTm~Ar 402 (630)
T KOG0742|consen 328 PWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIA-TANTK----KHQAPFRNILFYGPPGTGKTMFAR 402 (630)
T ss_pred CCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHH-hcccc----cccchhhheeeeCCCCCCchHHHH
Confidence 3444444444444433333334455799999999999999887765 22222 123578899999999999999999
Q ss_pred HHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCe-EEEecccccccCCCCCcchHHHHHHHHHHHHHhhcc
Q 003231 578 AIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPT-IIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDG 656 (837)
Q Consensus 578 alA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~ps-VLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~ 656 (837)
.||...|..+-.++..++.. .-.+.-..++++|+=+.++..+ +|||||.|.++..|......+..+..+|.|+-.--.
T Consensus 403 elAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd 481 (630)
T KOG0742|consen 403 ELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 481 (630)
T ss_pred HHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc
Confidence 99999999999888887643 2224566789999999887654 778999999999888877888888888888753221
Q ss_pred ccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC------------------------
Q 003231 657 LLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV------------------------ 712 (837)
Q Consensus 657 ~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~------------------------ 712 (837)
....++++.+||+|.++|.++-+|||.+++||+|..++|..+|..++.++-.
T Consensus 482 ----qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l 557 (630)
T KOG0742|consen 482 ----QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKL 557 (630)
T ss_pred ----cccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeee
Confidence 2345888899999999999999999999999999999999999988876421
Q ss_pred ----ChhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 713 ----EDLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 713 ----~d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
.+.-+.+.|..|+||||++|..|+.
T Consensus 558 ~~~~t~~~~~EaAkkTeGfSGREiakLva 586 (630)
T KOG0742|consen 558 AGFDTGRKCSEAAKKTEGFSGREIAKLVA 586 (630)
T ss_pred ccchHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 1223567899999999999998874
No 64
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.1e-19 Score=189.29 Aligned_cols=194 Identities=30% Similarity=0.431 Sum_probs=155.3
Q ss_pred ccCCCCCCccccccccchHHHHHHHHHHHcccCCchhh-cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------
Q 003231 514 VIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLF-KGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG-------- 584 (837)
Q Consensus 514 ~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~-~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg-------- 584 (837)
++|..+..--|+.++--.++|+++..++...+...+-- ....+...+-+||+||||||||+|++++|+.+.
T Consensus 131 ~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~ 210 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYY 210 (423)
T ss_pred eccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccc
Confidence 44555555678888888899999999887755443322 123344566799999999999999999999983
Q ss_pred -CcEEEEeccccccccccccHHHHHHHHHHHHhc---CC--eEEEecccccccCCCCC---cchHHHHHHHHHHHHHhhc
Q 003231 585 -ASFINVSMSTITSKWFGEDEKNVRALFTLAAKV---SP--TIIFVDEVDSMLGQRTR---VGEHEAMRKIKNEFMTHWD 655 (837)
Q Consensus 585 -~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~---~p--sVLfIDEID~L~~~r~~---~~~~~~~~~i~~~Ll~~ld 655 (837)
..++++++..+.++|++++.+.+.++|...... +. ..++|||++.|...|.. ..+....-+++|.+++++|
T Consensus 211 ~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744|consen 211 KGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred cceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Confidence 467999999999999999999999999987643 22 35668999999865522 1233344588999999999
Q ss_pred cccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh
Q 003231 656 GLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK 709 (837)
Q Consensus 656 ~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~ 709 (837)
.+...+ +|++++|+|-.+.+|.++.+|-|.+.++++|+...+.+|++..+..
T Consensus 291 rlK~~~--NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 291 RLKRYP--NVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HhccCC--CEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 986544 5999999999999999999999999999999999999999987764
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.79 E-value=1.4e-18 Score=199.81 Aligned_cols=260 Identities=14% Similarity=0.223 Sum_probs=175.3
Q ss_pred cCCCccccccccccccccHHHHHHHHHHHHhhcccccc-cccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEE
Q 003231 61 LDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEI-SKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLL 139 (837)
Q Consensus 61 v~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ 139 (837)
+..+.-+++|+++.++ +..+..|.+++-.++.|+++ .+|+ + +.+++|||+||+++++++||||+|++++.++..
T Consensus 172 ~~~~~p~v~~~dIgGl--~~~i~~i~~~v~lp~~~~~l~~~~g--l-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~ 246 (512)
T TIGR03689 172 VLEEVPDVTYADIGGL--DSQIEQIRDAVELPFLHPELYREYD--L-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA 246 (512)
T ss_pred eeecCCCCCHHHcCCh--HHHHHHHHHHHHHHhhCHHHHHhcc--C-CCCcceEEECCCCCcHHHHHHHHHHhhcccccc
Confidence 3345558999999998 99999999999999999987 3444 3 457899999999999999999999999766432
Q ss_pred eeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCccccc
Q 003231 140 LDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRR 219 (837)
Q Consensus 140 ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (837)
. .... ..+ + .+ .++
T Consensus 247 -~-~~~~-------------~~f---------------l-----------------------~v-----~~~-------- 260 (512)
T TIGR03689 247 -E-TGDK-------------SYF---------------L-----------------------NI-----KGP-------- 260 (512)
T ss_pred -c-cCCc-------------eeE---------------E-----------------------ec-----cch--------
Confidence 0 0000 000 0 00 000
Q ss_pred CCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhh-cCCcEEEEEccchhHhhhc-----HH----HHHH
Q 003231 220 NASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSIT-ETSSVILYLRDVDKLLFQS-----QR----FYNL 289 (837)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~-~~~p~Ilfi~di~~~l~~~-----~~----~~~~ 289 (837)
.-...|.++....+..+|+.+.+.+ ...|+||||||+|.++..+ .+ ..+.
T Consensus 261 --------------------eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~ 320 (512)
T TIGR03689 261 --------------------ELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQ 320 (512)
T ss_pred --------------------hhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHH
Confidence 0001233333446677787777653 3469999999999987432 11 2233
Q ss_pred HHHHHHhcc--CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 003231 290 LDKLLKKLS--GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIA 365 (837)
Q Consensus 290 lk~~l~~l~--g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~ 365 (837)
|-..++.+. ++|+|||+ +|++..+|+||.| ||..+|+|++|+.++|..||+.++.+... .. ..+
T Consensus 321 LL~~LDgl~~~~~ViVI~A-----TN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~---l~---~~l- 388 (512)
T TIGR03689 321 LLSELDGVESLDNVIVIGA-----SNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLP---LD---ADL- 388 (512)
T ss_pred HHHHhcccccCCceEEEec-----cCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCC---ch---HHH-
Confidence 333333333 58999998 7889999999999 99999999999999999999998764321 10 001
Q ss_pred HHhhcCCCChhHH------------------------------hhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccC
Q 003231 366 EVLAANDLECDDL------------------------------GSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRN 415 (837)
Q Consensus 366 ~vl~~~~~~~~dL------------------------------~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~ 415 (837)
....|..+.++ ..++.. -++||+.|..||..|..+++.+... .
T Consensus 389 --~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~-d~~sGa~i~~iv~~a~~~ai~~~~~----~ 461 (512)
T TIGR03689 389 --AEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFK-DFVSGAMIANIVDRAKKRAIKDHIT----G 461 (512)
T ss_pred --HHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeec-ccccHHHHHHHHHHHHHHHHHHHHh----c
Confidence 11223333332 233334 3469999999999999999876531 1
Q ss_pred CceeecHHhHHHHHH
Q 003231 416 GKLVISSKSLSHGLS 430 (837)
Q Consensus 416 ~~~~i~~~~~~~~l~ 430 (837)
+.--|++++|..|+.
T Consensus 462 ~~~~~~~~~l~~a~~ 476 (512)
T TIGR03689 462 GQVGLRIEHLLAAVL 476 (512)
T ss_pred CCcCcCHHHHHHHHH
Confidence 122488999999997
No 66
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.79 E-value=3e-19 Score=169.73 Aligned_cols=130 Identities=36% Similarity=0.668 Sum_probs=114.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcC-CeEEEecccccccCCCCCcchH
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVS-PTIIFVDEVDSMLGQRTRVGEH 640 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~-psVLfIDEID~L~~~r~~~~~~ 640 (837)
+||+||||||||++|+.+|+.++.+++.+++.++.+.+.+.....+..+|..+.... |+||||||+|.+.+.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 699999999999999999999999999999999998899999999999999999887 9999999999998876 33455
Q ss_pred HHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHH-HHHHHhhhcCC
Q 003231 641 EAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAII-RRFERRIMVGL 693 (837)
Q Consensus 641 ~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~-rRF~~~I~~~~ 693 (837)
.....+.+.++..++..... ..+++||+|||.++.+++.++ +||+..+.++.
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 66678888898888887543 356999999999999999999 99998888763
No 67
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.79 E-value=1.8e-18 Score=196.51 Aligned_cols=234 Identities=16% Similarity=0.218 Sum_probs=182.3
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 66 IKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 66 ~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
-.+||+++.++ +..+..|.+++-.+|.++++.+... + ..+++|||+||+++++++||||+|++.++.++-++.++|
T Consensus 178 p~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~g-i-~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 178 PLESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIG-I-KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcC-C-CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 45899999999 9999999999999999998744332 2 467899999999999999999999999999988877766
Q ss_pred chhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcc
Q 003231 146 SLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMS 225 (837)
Q Consensus 146 ~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (837)
..++
T Consensus 254 ~~k~---------------------------------------------------------------------------- 257 (438)
T PTZ00361 254 IQKY---------------------------------------------------------------------------- 257 (438)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 4322
Q ss_pred cccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHHhc
Q 003231 226 SISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLKKL 297 (837)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~~l 297 (837)
.++....+..+|+.+..- .|+||||||||.++..+ .+....+..+|..+
T Consensus 258 --------------------~Ge~~~~vr~lF~~A~~~---~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L 314 (438)
T PTZ00361 258 --------------------LGDGPKLVRELFRVAEEN---APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL 314 (438)
T ss_pred --------------------cchHHHHHHHHHHHHHhC---CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH
Confidence 111122567788877664 89999999999977432 12223333444443
Q ss_pred -----cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhc
Q 003231 298 -----SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAA 370 (837)
Q Consensus 298 -----~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~ 370 (837)
.++|.||++ +|+...+|.+|.| ||..+|+|++|+.++|..||+.++.++ ...
T Consensus 315 dg~~~~~~V~VI~A-----TNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~----------------~l~ 373 (438)
T PTZ00361 315 DGFDSRGDVKVIMA-----TNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM----------------TLA 373 (438)
T ss_pred hhhcccCCeEEEEe-----cCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC----------------CCC
Confidence 357899998 7889999999997 999999999999999999999865322 123
Q ss_pred CCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 371 NDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 371 ~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
.+++..++...+.. |++++|..|+..|...++..+ +..|+.+||..|++.+..
T Consensus 374 ~dvdl~~la~~t~g---~sgAdI~~i~~eA~~~Alr~~--------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 374 EDVDLEEFIMAKDE---LSGADIKAICTEAGLLALRER--------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred cCcCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhc--------CCccCHHHHHHHHHHHHh
Confidence 45777888888888 999999999999998887544 345999999999995543
No 68
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.77 E-value=4.9e-18 Score=198.02 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=176.1
Q ss_pred ccCCCccccccccccccccHHHHHHHHHHHHhhcccccc-cccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEE
Q 003231 60 VLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEI-SKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLL 138 (837)
Q Consensus 60 vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll 138 (837)
+...+..+++|++++++ ++.|..|.+.+.. +++++. .+++ ...+++|||+||+++++++||||||++.+++++
T Consensus 44 ~~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~alA~~~~~~~~ 117 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF 117 (495)
T ss_pred cccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 44566889999999998 9999999987765 777764 3333 356789999999999999999999999999999
Q ss_pred EeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccc
Q 003231 139 LLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHR 218 (837)
Q Consensus 139 ~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (837)
.++.++|...+ .|.+
T Consensus 118 ~i~~~~~~~~~---~g~~-------------------------------------------------------------- 132 (495)
T TIGR01241 118 SISGSDFVEMF---VGVG-------------------------------------------------------------- 132 (495)
T ss_pred eccHHHHHHHH---hccc--------------------------------------------------------------
Confidence 98887775322 1110
Q ss_pred cCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHH
Q 003231 219 RNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLL 290 (837)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~l 290 (837)
.-.+..+|+.+.. ..|+||||||||.+...+ .+.-..+
T Consensus 133 -------------------------------~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~ 178 (495)
T TIGR01241 133 -------------------------------ASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTL 178 (495)
T ss_pred -------------------------------HHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHH
Confidence 0134456665544 489999999999976432 1222333
Q ss_pred HHHHHhcc-----CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhH
Q 003231 291 DKLLKKLS-----GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNH 363 (837)
Q Consensus 291 k~~l~~l~-----g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~ 363 (837)
..+|..+. ++|+|||+ +|++..+|++|.| ||..+|.|++|+.++|.+||+.++...
T Consensus 179 ~~lL~~~d~~~~~~~v~vI~a-----Tn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~------------ 241 (495)
T TIGR01241 179 NQLLVEMDGFGTNTGVIVIAA-----TNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK------------ 241 (495)
T ss_pred HHHHhhhccccCCCCeEEEEe-----cCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC------------
Confidence 33443332 36899998 7889999999998 999999999999999999999875321
Q ss_pred HHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHh
Q 003231 364 IAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 364 i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
....+++..+|...+.. +++++|+.++..|+..+..++. -.|+.++|+.|+...
T Consensus 242 ----~~~~~~~l~~la~~t~G---~sgadl~~l~~eA~~~a~~~~~--------~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 242 ----KLAPDVDLKAVARRTPG---FSGADLANLLNEAALLAARKNK--------TEITMNDIEEAIDRV 295 (495)
T ss_pred ----CCCcchhHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHH
Confidence 11134566788888888 9999999999988776654332 348999999999843
No 69
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.2e-18 Score=187.40 Aligned_cols=220 Identities=22% Similarity=0.366 Sum_probs=173.8
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFG 601 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G 601 (837)
-+|+.++--.+.|+.|.+-+....+..+.|+..|....+|.|||||||||||+++.|+|+.+++.++.++.++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc---
Confidence 58999999999999999999988999999999998889999999999999999999999999999999988775432
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcch-----H-HHHHHHHHHHHHhhccccccCCceEEEEEecCCCC
Q 003231 602 EDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGE-----H-EAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF 675 (837)
Q Consensus 602 ~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~-----~-~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~ 675 (837)
.. ++.++... ...+||+|+|||+-+.-+..... + ...+-.+..|++.+||+.+..++--+||+|||.++
T Consensus 275 --~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 275 --SD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred --HH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 22 66665543 34589999999988653322211 1 11234678899999999998887789999999999
Q ss_pred CCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCC--CCHHHHHHHHHH---HHHHHHHHHH
Q 003231 676 DLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEG--YSGSDLKNLCVT---AAYRPVRELI 748 (837)
Q Consensus 676 ~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G--~sg~DL~~L~~~---Aa~~av~r~~ 748 (837)
.|||||+| |+|..|+++..+.+....++..++.... +..-++++.+..++ .|++|+....-. .+..++++++
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv 428 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLV 428 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHH
Confidence 99999999 9999999999999999999999987542 23344555555444 599999855432 3556666665
Q ss_pred HH
Q 003231 749 QE 750 (837)
Q Consensus 749 ~~ 750 (837)
+.
T Consensus 429 ~~ 430 (457)
T KOG0743|consen 429 EA 430 (457)
T ss_pred HH
Confidence 53
No 70
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=3.4e-17 Score=178.25 Aligned_cols=176 Identities=27% Similarity=0.461 Sum_probs=134.8
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHH---HHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKE---SLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIA 580 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~---~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA 580 (837)
..+..++||+ ++++++||++... -|.+++.. ....+++||||||||||+||+.||
T Consensus 12 ~PLA~rmRP~---------~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 12 MPLAERLRPK---------SLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred cChHHHhCCC---------CHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHH
Confidence 3678899988 8999999998763 35555543 356789999999999999999999
Q ss_pred HHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcC----CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcc
Q 003231 581 NEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVS----PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDG 656 (837)
Q Consensus 581 ~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~----psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~ 656 (837)
...+.+|..+++.. ...+.++.+++.|++.. ..|||||||+++.. .....|+-+++.
T Consensus 70 ~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK------------~QQD~lLp~vE~ 130 (436)
T COG2256 70 GTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK------------AQQDALLPHVEN 130 (436)
T ss_pred HhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh------------hhhhhhhhhhcC
Confidence 99999999998744 45567899999996543 48999999998843 222345555543
Q ss_pred ccccCCceEEEEEec--CCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh--cCC-------ChhhHHHHHHHcC
Q 003231 657 LLTRNGERILVLAAT--NRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK--EKV-------EDLDFKELAAMTE 725 (837)
Q Consensus 657 ~~~~~~~~vlVIaTT--N~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~--~~~-------~d~dl~~LA~~t~ 725 (837)
..+++|++| |+.+.+.+++++|+ .++.+...+.++..++++..+.. .++ ++..++.|+..++
T Consensus 131 ------G~iilIGATTENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~ 203 (436)
T COG2256 131 ------GTIILIGATTENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN 203 (436)
T ss_pred ------CeEEEEeccCCCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC
Confidence 346666554 66689999999999 88999999999999999884433 222 3566778888887
Q ss_pred CC
Q 003231 726 GY 727 (837)
Q Consensus 726 G~ 727 (837)
|-
T Consensus 204 GD 205 (436)
T COG2256 204 GD 205 (436)
T ss_pred ch
Confidence 73
No 71
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-17 Score=169.51 Aligned_cols=232 Identities=16% Similarity=0.284 Sum_probs=187.1
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-+||+.++++. +-.|+...+|+-.+|.|.++.+... -..++++||+||++|+++|||||.||+-.|.|+-+-.+
T Consensus 148 ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qig--idpprgvllygppg~gktml~kava~~t~a~firvvgs 223 (408)
T KOG0727|consen 148 EKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQIG--IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 223 (408)
T ss_pred CCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHhC--CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccH
Confidence 4457999999999 9999999999999999999966553 35789999999999999999999999999999999999
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
.|.-|+ .|+...
T Consensus 224 efvqky---lgegpr----------------------------------------------------------------- 235 (408)
T KOG0727|consen 224 EFVQKY---LGEGPR----------------------------------------------------------------- 235 (408)
T ss_pred HHHHHH---hccCcH-----------------------------------------------------------------
Confidence 997665 233211
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc-------H-HHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS-------Q-RFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-------~-~~~~~lk~~l~ 295 (837)
.+.-+|.++.+- .|.|+||||||.+-..+ . +.-.+|-.+|+
T Consensus 236 ----------------------------mvrdvfrlaken---apsiifideidaiatkrfdaqtgadrevqril~elln 284 (408)
T KOG0727|consen 236 ----------------------------MVRDVFRLAKEN---APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLN 284 (408)
T ss_pred ----------------------------HHHHHHHHHhcc---CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHH
Confidence 566688888875 99999999999976444 2 35556667788
Q ss_pred hccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 296 KLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 296 ~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.++| ||.||=+ +|+.+-+|.||.| |+-.+|++++|+..++.-+|.....+|.
T Consensus 285 qmdgfdq~~nvkvima-----tnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~---------------- 343 (408)
T KOG0727|consen 285 QMDGFDQTTNVKVIMA-----TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMN---------------- 343 (408)
T ss_pred hccCcCcccceEEEEe-----cCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhccc----------------
Confidence 8777 8888876 8999999999998 8999999999999999999987553332
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
...+++..++-.+--. ++++.|..|...|--+++. ..+-+|..+||++|-.
T Consensus 344 ls~~vdle~~v~rpdk---is~adi~aicqeagm~avr--------~nryvvl~kd~e~ay~ 394 (408)
T KOG0727|consen 344 LSDEVDLEDLVARPDK---ISGADINAICQEAGMLAVR--------ENRYVVLQKDFEKAYK 394 (408)
T ss_pred CCcccCHHHHhcCccc---cchhhHHHHHHHHhHHHHH--------hcceeeeHHHHHHHHH
Confidence 2344566666544444 6999999999988888864 3456788899999987
No 72
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=8.5e-17 Score=178.22 Aligned_cols=210 Identities=22% Similarity=0.275 Sum_probs=147.6
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
+.++.++||. +|++++|++++++.+..++.....+ ..++.++||+||||||||++|+++|+++
T Consensus 13 ~~~~~~~rP~---------~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 13 DEIERSLRPK---------SLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred chhhhhcCcC---------CHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 3446777777 8999999999999998888642111 1456789999999999999999999999
Q ss_pred CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHH--hhcccccc-
Q 003231 584 GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMT--HWDGLLTR- 660 (837)
Q Consensus 584 g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~--~ld~~~~~- 660 (837)
+..+..++.+.+. ....+..++... ..++||||||||.+... ..+.....++.... .++.....
T Consensus 76 ~~~~~~~~~~~~~------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----~~e~l~~~~e~~~~~~~l~~~~~~~ 142 (328)
T PRK00080 76 GVNIRITSGPALE------KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-----VEEILYPAMEDFRLDIMIGKGPAAR 142 (328)
T ss_pred CCCeEEEeccccc------ChHHHHHHHHhc--ccCCEEEEecHhhcchH-----HHHHHHHHHHhcceeeeeccCcccc
Confidence 9988777665432 122333444332 34689999999988431 11111111111100 00100000
Q ss_pred ----CCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHH
Q 003231 661 ----NGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKN 734 (837)
Q Consensus 661 ----~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~ 734 (837)
.-.++++|++||++..+++++++||...+.++.|+.+++.+|++..+...++ ++..+..|+..+.|.. +.+..
T Consensus 143 ~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~ 221 (328)
T PRK00080 143 SIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANR 221 (328)
T ss_pred ceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHH
Confidence 1123788999999999999999999888999999999999999998887765 7778999999999854 67777
Q ss_pred HHHHHHHHHH
Q 003231 735 LCVTAAYRPV 744 (837)
Q Consensus 735 L~~~Aa~~av 744 (837)
++..+...+.
T Consensus 222 ~l~~~~~~a~ 231 (328)
T PRK00080 222 LLRRVRDFAQ 231 (328)
T ss_pred HHHHHHHHHH
Confidence 7766555444
No 73
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.75 E-value=7.2e-17 Score=197.16 Aligned_cols=205 Identities=19% Similarity=0.243 Sum_probs=142.6
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc---------
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT--------- 596 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~--------- 596 (837)
+++|++++++.|.+++.....+.. ....++||+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~-------~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGK-------MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcC-------CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 389999999999998765332221 1234799999999999999999999999999999876542
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccc-----c------ccCCceE
Q 003231 597 SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL-----L------TRNGERI 665 (837)
Q Consensus 597 s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~-----~------~~~~~~v 665 (837)
..|+|...+.+.+.|..+....| ||||||||++.+...+ ...+.|+..+|.. . ..+-.++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~--------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG--------DPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC--------CHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24677777777778887766554 8999999999753322 1123444444421 0 0112468
Q ss_pred EEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh-----hcCC-------ChhhHHHHHHHcC-CCCHHHH
Q 003231 666 LVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLA-----KEKV-------EDLDFKELAAMTE-GYSGSDL 732 (837)
Q Consensus 666 lVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~-----~~~~-------~d~dl~~LA~~t~-G~sg~DL 732 (837)
++|+|||.++.+++++++|| .+|.|+.|+.+++..|++.++. ..++ ++..+..|++.+. .+..++|
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l 543 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNL 543 (775)
T ss_pred EEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHH
Confidence 99999999999999999999 5889999999999999987762 2221 4445555555322 3334555
Q ss_pred HHHHHHHHHHHHHHH
Q 003231 733 KNLCVTAAYRPVREL 747 (837)
Q Consensus 733 ~~L~~~Aa~~av~r~ 747 (837)
+..+...+..+++++
T Consensus 544 ~r~i~~~~~~~~~~~ 558 (775)
T TIGR00763 544 ERQIEKICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544444444433
No 74
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.74 E-value=2.3e-17 Score=169.39 Aligned_cols=225 Identities=19% Similarity=0.269 Sum_probs=166.6
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcccccc-cccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccc
Q 003231 66 IKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEI-SKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVND 144 (837)
Q Consensus 66 ~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~ 144 (837)
.++|||+.=+- |..|..-. -..-+|+.|+. -+| +++.||.+||++.+++|+|||||.+..++||.+.++.
T Consensus 116 ~~it~ddViGq--EeAK~kcr-li~~yLenPe~Fg~W------APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~ 186 (368)
T COG1223 116 SDITLDDVIGQ--EEAKRKCR-LIMEYLENPERFGDW------APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE 186 (368)
T ss_pred ccccHhhhhch--HHHHHHHH-HHHHHhhChHHhccc------CcceeEEECCCCccHHHHHHHHhcccCCceEEechHH
Confidence 46889998886 76664311 11235677664 233 6899999999999999999999999999999999988
Q ss_pred cchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCc
Q 003231 145 FSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDM 224 (837)
Q Consensus 145 ~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (837)
+-++.
T Consensus 187 liGeh--------------------------------------------------------------------------- 191 (368)
T COG1223 187 LIGEH--------------------------------------------------------------------------- 191 (368)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 86532
Q ss_pred ccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc------HHHHHHHHHHHHhcc
Q 003231 225 SSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS------QRFYNLLDKLLKKLS 298 (837)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~------~~~~~~lk~~l~~l~ 298 (837)
.+|.---|..||+-+.+. .|||+||||+|.+=..+ -|....+..+|..|+
T Consensus 192 ---------------------VGdgar~Ihely~rA~~~---aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD 247 (368)
T COG1223 192 ---------------------VGDGARRIHELYERARKA---APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD 247 (368)
T ss_pred ---------------------hhhHHHHHHHHHHHHHhc---CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc
Confidence 112233677899988887 99999999999854332 245666666777777
Q ss_pred C-----CEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCC
Q 003231 299 G-----SVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDL 373 (837)
Q Consensus 299 g-----~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~ 373 (837)
| +|+.|+| +|++.-.|.|+..||+..|++.+|++|+|+.|++...+++-.. ++.
T Consensus 248 gi~eneGVvtIaa-----TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp--v~~-------------- 306 (368)
T COG1223 248 GIKENEGVVTIAA-----TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP--VDA-------------- 306 (368)
T ss_pred CcccCCceEEEee-----cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc--ccc--------------
Confidence 7 7788887 9999999999999999999999999999999998755443322 222
Q ss_pred ChhHHhhcccCCCCCChhhH-HHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 374 ECDDLGSICQADTMVLSNYI-EEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 374 ~~~dL~~~~~~d~~l~~~~I-e~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
....|...+.. +|+-+| |.+.+.|+..++.... =.|..++|+.|+.
T Consensus 307 ~~~~~~~~t~g---~SgRdikekvlK~aLh~Ai~ed~--------e~v~~edie~al~ 353 (368)
T COG1223 307 DLRYLAAKTKG---MSGRDIKEKVLKTALHRAIAEDR--------EKVEREDIEKALK 353 (368)
T ss_pred CHHHHHHHhCC---CCchhHHHHHHHHHHHHHHHhch--------hhhhHHHHHHHHH
Confidence 33344445555 566555 5567788888875443 3378899999998
No 75
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.7e-17 Score=191.81 Aligned_cols=239 Identities=17% Similarity=0.222 Sum_probs=186.7
Q ss_pred ccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEE
Q 003231 60 VLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLL 139 (837)
Q Consensus 60 vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ 139 (837)
+-+..+++|+|+||-+- |+.|..|.|-+- .||+|+- |.+-=.-.++++||+||++++++.||||.|.+-|++|+.
T Consensus 300 ~~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~s 374 (774)
T KOG0731|consen 300 FKNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 374 (774)
T ss_pred eccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceee
Confidence 44477888999999998 999999999775 6888875 665445689999999999999999999999999999999
Q ss_pred eeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCccccc
Q 003231 140 LDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRR 219 (837)
Q Consensus 140 ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (837)
+-.+.|..-. .| .+
T Consensus 375 vSGSEFvE~~----------------------------~g-----------------------------~~--------- 388 (774)
T KOG0731|consen 375 VSGSEFVEMF----------------------------VG-----------------------------VG--------- 388 (774)
T ss_pred echHHHHHHh----------------------------cc-----------------------------cc---------
Confidence 9999986411 00 00
Q ss_pred CCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhh---------cHHHHHHH
Q 003231 220 NASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQ---------SQRFYNLL 290 (837)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~---------~~~~~~~l 290 (837)
--.|..||+.+... .|+|+||||||.+=.. +++--+-|
T Consensus 389 ------------------------------asrvr~lf~~ar~~---aP~iifideida~~~~r~G~~~~~~~~e~e~tl 435 (774)
T KOG0731|consen 389 ------------------------------ASRVRDLFPLARKN---APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTL 435 (774)
T ss_pred ------------------------------hHHHHHHHHHhhcc---CCeEEEecccccccccccccccCCCChHHHHHH
Confidence 01677799999887 9999999999983211 23333344
Q ss_pred HHHHHhccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhH
Q 003231 291 DKLLKKLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNH 363 (837)
Q Consensus 291 k~~l~~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~ 363 (837)
..+|-.++| .|++|++ ||+++-+|+||.| ||-.+|.|.+|+..+|.+||+.|+..
T Consensus 436 nQll~emDgf~~~~~vi~~a~-----tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~------------- 497 (774)
T KOG0731|consen 436 NQLLVEMDGFETSKGVIVLAA-----TNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK------------- 497 (774)
T ss_pred HHHHHHhcCCcCCCcEEEEec-----cCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc-------------
Confidence 455555555 7999987 9999999999998 99999999999999999999997532
Q ss_pred HHHHhhc-CCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 364 IAEVLAA-NDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 364 i~~vl~~-~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
+..+ +.++...|+.++.. |+|++|-.++..|+-.+..+.. -.|+..+|+.+++++-.
T Consensus 498 ---~~~~~e~~dl~~~a~~t~g---f~gadl~n~~neaa~~a~r~~~--------~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 498 ---KKLDDEDVDLSKLASLTPG---FSGADLANLCNEAALLAARKGL--------REIGTKDLEYAIERVIA 555 (774)
T ss_pred ---cCCCcchhhHHHHHhcCCC---CcHHHHHhhhhHHHHHHHHhcc--------CccchhhHHHHHHHHhc
Confidence 2222 23455557788888 9999999999888888765433 34888999999995433
No 76
>CHL00176 ftsH cell division protein; Validated
Probab=99.73 E-value=5.9e-17 Score=192.07 Aligned_cols=237 Identities=19% Similarity=0.239 Sum_probs=176.1
Q ss_pred ccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEE
Q 003231 60 VLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLL 139 (837)
Q Consensus 60 vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ 139 (837)
+....+.+++|+++.++ +..|..|.+.+.. |++++. |..-=...+++|||+||+++++++||||||++.+++++.
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~~-lk~~~~--~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~ 246 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVSF-LKKPER--FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS 246 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHHH-HhCHHH--HhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 44567888999999999 9999999887654 787765 332224568899999999999999999999999999999
Q ss_pred eeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCccccc
Q 003231 140 LDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRR 219 (837)
Q Consensus 140 ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (837)
++.++|...+ .|.
T Consensus 247 is~s~f~~~~---~g~---------------------------------------------------------------- 259 (638)
T CHL00176 247 ISGSEFVEMF---VGV---------------------------------------------------------------- 259 (638)
T ss_pred ccHHHHHHHh---hhh----------------------------------------------------------------
Confidence 8887774321 000
Q ss_pred CCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHH
Q 003231 220 NASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLD 291 (837)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk 291 (837)
..-.+..+|+-+. +..|+||||||||.+...+ .+.-..+.
T Consensus 260 -----------------------------~~~~vr~lF~~A~---~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~ 307 (638)
T CHL00176 260 -----------------------------GAARVRDLFKKAK---ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLN 307 (638)
T ss_pred -----------------------------hHHHHHHHHHHHh---cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHH
Confidence 0012344555444 4589999999999976321 22333444
Q ss_pred HHHHhcc-----CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHH
Q 003231 292 KLLKKLS-----GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHI 364 (837)
Q Consensus 292 ~~l~~l~-----g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i 364 (837)
.+|..++ .+|+|||+ +|++..+|+||.| ||..+|.|.+|+.++|..||+.++.+.
T Consensus 308 ~LL~~~dg~~~~~~ViVIaa-----TN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~------------- 369 (638)
T CHL00176 308 QLLTEMDGFKGNKGVIVIAA-----TNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK------------- 369 (638)
T ss_pred HHHhhhccccCCCCeeEEEe-----cCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-------------
Confidence 4554433 37899998 7888889999998 999999999999999999999876541
Q ss_pred HHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHh
Q 003231 365 AEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 365 ~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
....+++...|+..+.. +++++|..++..|+..+...+ +-.|+.++|+.|+..+
T Consensus 370 ---~~~~d~~l~~lA~~t~G---~sgaDL~~lvneAal~a~r~~--------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 370 ---KLSPDVSLELIARRTPG---FSGADLANLLNEAAILTARRK--------KATITMKEIDTAIDRV 423 (638)
T ss_pred ---ccchhHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHhC--------CCCcCHHHHHHHHHHH
Confidence 11224567788888888 999999999998876665433 2348999999999843
No 77
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.9e-16 Score=179.56 Aligned_cols=222 Identities=20% Similarity=0.299 Sum_probs=159.5
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-------
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS------- 597 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s------- 597 (837)
+|-.|++++|++|.+++.....+.. ...+-++|+||||+|||++++.||+.+|..|++++...+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs-------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGS-------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhccc-------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 3589999999999999976433222 34567999999999999999999999999999999766543
Q ss_pred --ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHH-----HHHHHhhccccccCCceEEEEEe
Q 003231 598 --KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIK-----NEFMTHWDGLLTRNGERILVLAA 670 (837)
Q Consensus 598 --~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~-----~~Ll~~ld~~~~~~~~~vlVIaT 670 (837)
.|+|...+++-+.+.......| +++|||||++...-.+ ....++-.++ ..|+.+.-+.. -+-.+|++|||
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qG-DPasALLElLDPEQNanFlDHYLdVp-~DLSkVLFicT 560 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQG-DPASALLELLDPEQNANFLDHYLDVP-VDLSKVLFICT 560 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCC-ChHHHHHHhcChhhccchhhhccccc-cchhheEEEEe
Confidence 3888888887777777666554 8999999999732211 1111221111 12333222221 12257999999
Q ss_pred cCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh-----cCCC--hhhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003231 671 TNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK-----EKVE--DLDFKELAAMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 671 TN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~-----~~~~--d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
+|..+.+++++++|+ .+|.++-+..++...|.+.+|-. .++. .+++..-| .-.-|+..|++|..+.
T Consensus 561 AN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~a------l~~lI~~YcrEaGVRn 633 (906)
T KOG2004|consen 561 ANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDA------LLALIERYCREAGVRN 633 (906)
T ss_pred ccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHH------HHHHHHHHHHHHhHHH
Confidence 999999999999999 89999999999999999887643 3332 22222211 2245778899999999
Q ss_pred HHHHHHHHhhHhHHHHHHHH
Q 003231 744 VRELIQEERKKDMEKKKREE 763 (837)
Q Consensus 744 v~r~~~~~~~~~~~~~~~~~ 763 (837)
+.+.++++..+...+..+..
T Consensus 634 Lqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 634 LQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999988877665555443
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=7.8e-17 Score=195.85 Aligned_cols=183 Identities=25% Similarity=0.401 Sum_probs=142.5
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.+++++|+++.+..+.+.+.. +...+++|+||||||||++|+++|..+ +..++.+++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 788999999999887766644 234689999999999999999999987 778999999
Q ss_pred cccc--cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcch-HHHHHHHHHHHHHhhccccccCCceEEEEE
Q 003231 593 STIT--SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGE-HEAMRKIKNEFMTHWDGLLTRNGERILVLA 669 (837)
Q Consensus 593 s~l~--s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIa 669 (837)
+.+. .+|.|+.+..++.+|+.+.+..++||||||||.+++.+...+. .+ ..+.|...+. ...+.+|+
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~----~~~~L~~~l~------~g~i~~Ig 316 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD----ASNLLKPALS------SGKLRCIG 316 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH----HHHHHHHHHh------CCCeEEEE
Confidence 8887 4789999999999999998888899999999999875432221 22 2222333222 23588888
Q ss_pred ecCC-----CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh----cC--CChhhHHHHHHHcCCCCH
Q 003231 670 ATNR-----PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK----EK--VEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 670 TTN~-----~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~----~~--~~d~dl~~LA~~t~G~sg 729 (837)
+||. ....|+++.|||. .|.++.|+.+++..|++.+... ++ +.+..+..++..+..|-+
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 8886 3467999999995 7999999999999999977654 22 367777777777766543
No 79
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.72 E-value=8e-17 Score=180.89 Aligned_cols=232 Identities=17% Similarity=0.259 Sum_probs=174.4
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-+++|++++++ +..+..|.+++..+++++++.+... ...+++|||+||+++++++||||+|++.+++++.+...
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g--~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEVG--IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcC--CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 4467899999998 9999999999999999998744322 24578899999999999999999999999998877655
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
++..++
T Consensus 191 ~l~~~~-------------------------------------------------------------------------- 196 (364)
T TIGR01242 191 ELVRKY-------------------------------------------------------------------------- 196 (364)
T ss_pred HHHHHh--------------------------------------------------------------------------
Confidence 543211
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~ 295 (837)
.+.....+..+|+.+.. ..|+||||||+|.+...+ .+....|-..|.
T Consensus 197 ----------------------~g~~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~ 251 (364)
T TIGR01242 197 ----------------------IGEGARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA 251 (364)
T ss_pred ----------------------hhHHHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHH
Confidence 01111245556666654 489999999999976432 111122222332
Q ss_pred hc-----cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 296 KL-----SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 296 ~l-----~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.+ .++|.||++ +|+...+|+++.| ||...|.|++|+.++|.+||+.++.+. .
T Consensus 252 ~ld~~~~~~~v~vI~t-----tn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~----------------~ 310 (364)
T TIGR01242 252 ELDGFDPRGNVKVIAA-----TNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM----------------K 310 (364)
T ss_pred HhhCCCCCCCEEEEEe-----cCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC----------------C
Confidence 22 358999988 6777889999998 999999999999999999999764221 1
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
...+++..+|..++.. +++++|..++..|...++..+ +-.|+.+||+.|++
T Consensus 311 l~~~~~~~~la~~t~g---~sg~dl~~l~~~A~~~a~~~~--------~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 311 LAEDVDLEAIAKMTEG---ASGADLKAICTEAGMFAIREE--------RDYVTMDDFIKAVE 361 (364)
T ss_pred CCccCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhC--------CCccCHHHHHHHHH
Confidence 2234677888888888 999999999999988887643 33599999999997
No 80
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=2.3e-16 Score=172.74 Aligned_cols=199 Identities=22% Similarity=0.243 Sum_probs=137.6
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccc
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGE 602 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~ 602 (837)
+|++++|++++++.|..++.....++ .++.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 68999999999999998886422221 34568999999999999999999999998877666543221
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHh--hccccc-----cCCceEEEEEecCCCC
Q 003231 603 DEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTH--WDGLLT-----RNGERILVLAATNRPF 675 (837)
Q Consensus 603 ~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~--ld~~~~-----~~~~~vlVIaTTN~~~ 675 (837)
...+...+... ..+.+|||||++.+.+. ..+....+++..... ++.... .....+++|++||++.
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-----~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~ 140 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG 140 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH-----HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc
Confidence 11222222222 24689999999988531 111111121111100 000000 0112378899999999
Q ss_pred CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003231 676 DLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 676 ~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
.+++++++||...+.++.|+.+++.+|++..+...++ ++..++.++..+.|+. +.+.+++..+...+
T Consensus 141 ~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 141 MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 9999999999888899999999999999998876654 7778899999999865 66677777655443
No 81
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.3e-16 Score=166.56 Aligned_cols=195 Identities=24% Similarity=0.327 Sum_probs=146.7
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
...+..+||. .|++.+|++++|++|.-++.....+.+ ...|+||+||||.|||+||..+|+++
T Consensus 14 ~~~e~~lRP~---------~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 14 MKIERSLRPK---------TLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred hhhhcccCcc---------cHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 3466777777 899999999999999998877544433 66799999999999999999999999
Q ss_pred CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc---
Q 003231 584 GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR--- 660 (837)
Q Consensus 584 g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~--- 660 (837)
|.++-..++.-+.. ...+-.++.. -.+..|||||||+++.+. +...|...|++....
T Consensus 77 gvn~k~tsGp~leK------~gDlaaiLt~--Le~~DVLFIDEIHrl~~~------------vEE~LYpaMEDf~lDI~I 136 (332)
T COG2255 77 GVNLKITSGPALEK------PGDLAAILTN--LEEGDVLFIDEIHRLSPA------------VEEVLYPAMEDFRLDIII 136 (332)
T ss_pred cCCeEecccccccC------hhhHHHHHhc--CCcCCeEEEehhhhcChh------------HHHHhhhhhhheeEEEEE
Confidence 99998777765532 2333344433 234589999999998541 222333334433211
Q ss_pred -----------CCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCC
Q 003231 661 -----------NGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGY 727 (837)
Q Consensus 661 -----------~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~ 727 (837)
+-.++.+|++|.+...+...+++||.....+..++.++...|+.......++ ++....++|.++.|.
T Consensus 137 G~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 137 GKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred ccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 1135788999999999999999999999999999999999999988777665 778889999999984
Q ss_pred CHHHHHHHH
Q 003231 728 SGSDLKNLC 736 (837)
Q Consensus 728 sg~DL~~L~ 736 (837)
++--..|+
T Consensus 217 -PRIAnRLL 224 (332)
T COG2255 217 -PRIANRLL 224 (332)
T ss_pred -cHHHHHHH
Confidence 44333333
No 82
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.1e-17 Score=164.39 Aligned_cols=228 Identities=14% Similarity=0.237 Sum_probs=181.5
Q ss_pred cccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccch
Q 003231 68 TTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSL 147 (837)
Q Consensus 68 vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~ 147 (837)
-|++-++++ +......-+..-.+.|||++++-. =-+.++++||+||+..+++.||+|.|||..++|+-+..+.+.-
T Consensus 144 StYeMiGgL--d~QIkeIkEVIeLPvKHPELF~aL--GIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 144 STYEMIGGL--DKQIKEIKEVIELPVKHPELFEAL--GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred cHHHHhccH--HHHHHHHHHHHhccccCHHHHHhc--CCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 358888887 777778899999999999995543 2367999999999999999999999999999999998888765
Q ss_pred hhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcccc
Q 003231 148 KMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSI 227 (837)
Q Consensus 148 ~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (837)
|+ -|+.
T Consensus 220 k~---igeg----------------------------------------------------------------------- 225 (404)
T KOG0728|consen 220 KY---IGEG----------------------------------------------------------------------- 225 (404)
T ss_pred HH---hhhh-----------------------------------------------------------------------
Confidence 44 1221
Q ss_pred cCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHHhccC
Q 003231 228 SSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLKKLSG 299 (837)
Q Consensus 228 ~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~~l~g 299 (837)
-..+..||=.+.+- .|.|+|.||||++=..+ .+.-..+-.+|+.|+|
T Consensus 226 ----------------------srmvrelfvmareh---apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 226 ----------------------SRMVRELFVMAREH---APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred ----------------------HHHHHHHHHHHHhc---CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 12677888888875 99999999999943211 2222223355666666
Q ss_pred -----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCC
Q 003231 300 -----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAAND 372 (837)
Q Consensus 300 -----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~ 372 (837)
+|.||=+ +|+.+-.|.||.| |.-.+|++++|+++.|+.|||+|-. +.-.+.|
T Consensus 281 featknikvima-----tnridild~allrpgridrkiefp~p~e~ar~~ilkihsr----------------kmnl~rg 339 (404)
T KOG0728|consen 281 FEATKNIKVIMA-----TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR----------------KMNLTRG 339 (404)
T ss_pred cccccceEEEEe-----ccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh----------------hhchhcc
Confidence 8888866 8998889999998 9999999999999999999999643 3344567
Q ss_pred CChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 373 LECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 373 ~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
++...+++.... -+|++...+.-.|--|+| +..++-|+.+||+.|+.
T Consensus 340 i~l~kiaekm~g---asgaevk~vcteagm~al--------rerrvhvtqedfemav~ 386 (404)
T KOG0728|consen 340 INLRKIAEKMPG---ASGAEVKGVCTEAGMYAL--------RERRVHVTQEDFEMAVA 386 (404)
T ss_pred cCHHHHHHhCCC---CccchhhhhhhhhhHHHH--------HHhhccccHHHHHHHHH
Confidence 888888888877 888999888888888887 35567899999999998
No 83
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.71 E-value=6.5e-17 Score=201.14 Aligned_cols=231 Identities=15% Similarity=0.195 Sum_probs=156.2
Q ss_pred CCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchhhhhhc-------CCCCCCccccccchhhhhhhhhcccc
Q 003231 107 PASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLKMQNKY-------GCARKEPSFKRSISEMTLERMSGLLG 179 (837)
Q Consensus 107 ~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~~~~~~-------g~~~k~~~~~~~~~~~~~~~~~~~~~ 179 (837)
+.++||||.||+|+++++||||||.+.+++|+.+..++|..++-..| |++.+-.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~------------------- 1688 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDID------------------- 1688 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccc-------------------
Confidence 57999999999999999999999999999999999999975431111 1111000
Q ss_pred ccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccc--hHHHHHHHH
Q 003231 180 SFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFD--EKLFLQSLY 257 (837)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~k~~~~~L~ 257 (837)
....++| |+...-.+ .++ ....+.+. ...-|..+|
T Consensus 1689 ----------~~~~~~~-----~~~~e~~e-------------~~n---------------~~~~~m~~~e~~~rIr~lF 1725 (2281)
T CHL00206 1689 ----------DSDDIDR-----DLDTELLT-------------MMN---------------ALTMDMMPKIDRFYITLQF 1725 (2281)
T ss_pred ----------ccccccc-----ccchhhhh-------------hcc---------------hhhhhhhhhhhHHHHHHHH
Confidence 0000000 00000000 000 00011111 223478899
Q ss_pred HHHHHhhcCCcEEEEEccchhHhhhcHH--HHHHHHHHHHhc-----cCCEEEEecccccCCCCCCchhHHHHc--cCCc
Q 003231 258 KVLVSITETSSVILYLRDVDKLLFQSQR--FYNLLDKLLKKL-----SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPY 328 (837)
Q Consensus 258 ~v~~~~~~~~p~Ilfi~di~~~l~~~~~--~~~~lk~~l~~l-----~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~ 328 (837)
+.+... .||||||||||.+-....+ ..+.|-..|+.. ..+|+|||| ||+++.+|+||.| ||..
T Consensus 1726 elARk~---SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAA-----TNRPD~LDPALLRPGRFDR 1797 (2281)
T CHL00206 1726 ELAKAM---SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIAS-----THIPQKVDPALIAPNKLNT 1797 (2281)
T ss_pred HHHHHC---CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEe-----CCCcccCCHhHcCCCCCCe
Confidence 999886 9999999999994332221 233343333321 236999998 9999999999998 9999
Q ss_pred eeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCC-CChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhc
Q 003231 329 NLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAAND-LECDDLGSICQADTMVLSNYIEEIVVSAISHHLMD 407 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~-~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~ 407 (837)
.|.|+.|+..+|.++++.++. .+. +-...+ ++...|+..+.+ ++|++|..++..|+..++.+
T Consensus 1798 ~I~Ir~Pd~p~R~kiL~ILl~-tkg-------------~~L~~~~vdl~~LA~~T~G---fSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1798 CIKIRRLLIPQQRKHFFTLSY-TRG-------------FHLEKKMFHTNGFGSITMG---SNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred EEEeCCCCchhHHHHHHHHHh-hcC-------------CCCCcccccHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999986431 110 111112 467888999999 99999999999999999876
Q ss_pred CCCccccCCceeecHHhHHHHHHHh
Q 003231 408 NEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 408 ~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
++ -+|+.++|+.|+...
T Consensus 1861 ~k--------s~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1861 KK--------SIIDTNTIRSALHRQ 1877 (2281)
T ss_pred CC--------CccCHHHHHHHHHHH
Confidence 54 348999999999844
No 84
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.7e-16 Score=182.59 Aligned_cols=192 Identities=18% Similarity=0.273 Sum_probs=145.8
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.-|..++|+. +|++|+|++.+++.|..++... +.++.+||+||+|+|||++|+.+|+.+
T Consensus 4 ~vLarKYRPq---------tFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 4 QVLARKWRPR---------DFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred hhHHHHhCCC---------cHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788887 9999999999999999988652 445678999999999999999999999
Q ss_pred CC-----------------------------cEEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccc
Q 003231 584 GA-----------------------------SFINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSM 630 (837)
Q Consensus 584 g~-----------------------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L 630 (837)
++ .+++++... ......++.+.+.+.. ....|+||||+|.|
T Consensus 63 nC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L 136 (700)
T PRK12323 63 NCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML 136 (700)
T ss_pred cCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc
Confidence 76 223333221 1123345556555432 34579999999998
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc
Q 003231 631 LGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE 710 (837)
Q Consensus 631 ~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~ 710 (837)
.. ...|.|+..|+. ...++++|.+||.+..+.+.+++|| ..+.|..++.++..+.++.++..+
T Consensus 137 s~------------~AaNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 137 TN------------HAFNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred CH------------HHHHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHc
Confidence 42 345667666654 3456788888999999999999999 899999999999999999998877
Q ss_pred CC--ChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 711 KV--EDLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 711 ~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
++ ++..+..|+..++| +.++..+++..+.
T Consensus 200 gi~~d~eAL~~IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 200 GIAHEVNALRLLAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 66 55667888988887 6667777766544
No 85
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3e-16 Score=178.40 Aligned_cols=191 Identities=19% Similarity=0.271 Sum_probs=143.9
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|..++||. +|++++|++.++..|..++... +.++.+||+||||||||++|+.+|+.+
T Consensus 6 ~~L~~KyRP~---------~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 6 EVLSRKYRPQ---------FFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred chhHHHhCCC---------CHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4577788888 8999999999999999888652 344569999999999999999999998
Q ss_pred CCc------------------------EEEEeccccccccccccHHHHHHHHHHHH----hcCCeEEEecccccccCCCC
Q 003231 584 GAS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAA----KVSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~----~~~psVLfIDEID~L~~~r~ 635 (837)
++. ++++++.. ......++.+.+.+. .....|+||||+|.|..
T Consensus 65 nce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~--- 135 (484)
T PRK14956 65 NCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD--- 135 (484)
T ss_pred CcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---
Confidence 753 33333211 011233455544443 23457999999998842
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.|+..++. +...+++|++|+.++.+.+.+++|| .++.|..++.++....++.++..+++ +
T Consensus 136 ---------~A~NALLKtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e 201 (484)
T PRK14956 136 ---------QSFNALLKTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYD 201 (484)
T ss_pred ---------HHHHHHHHHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 345666666643 3456888888888999999999999 78899999999999999999988776 7
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
+..+..|+..++| +.++.-+++..+
T Consensus 202 ~eAL~~Ia~~S~G-d~RdAL~lLeq~ 226 (484)
T PRK14956 202 QEGLFWIAKKGDG-SVRDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHH
Confidence 8889999999987 456666666543
No 86
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=4e-16 Score=183.13 Aligned_cols=193 Identities=19% Similarity=0.277 Sum_probs=145.9
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.-+.++||+. +|++|+|++.+++.|+.++... +.++.+||+||+|||||++|+.+|+.+
T Consensus 4 ~vLarKYRPq---------tFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 4 QVLARKWRPK---------DFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HhHHHHhCCC---------cHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788888 9999999999999999988641 345678999999999999999999998
Q ss_pred CCc------------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCC
Q 003231 584 GAS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~ 635 (837)
++. +++++..+ ......++.+++.+.. ....|+||||+|.|..
T Consensus 63 nCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--- 133 (830)
T PRK07003 63 NCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--- 133 (830)
T ss_pred cCccCCCCCCCcccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---
Confidence 652 33333321 1122345666665542 2357999999999842
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...|.|+..|+. ...++.+|.+||.+..+.+.+++|| ..+.|..++.++...+|+.++..+++ +
T Consensus 134 ---------~A~NALLKtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id 199 (830)
T PRK07003 134 ---------HAFNAMLKTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFE 199 (830)
T ss_pred ---------HHHHHHHHHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 234556665554 2346888889999999999999999 88999999999999999999988876 6
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
+..+..|++.++| +.++..+++..+..
T Consensus 200 ~eAL~lIA~~A~G-smRdALsLLdQAia 226 (830)
T PRK07003 200 PQALRLLARAAQG-SMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 8888999999997 45666666555543
No 87
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.69 E-value=1.2e-16 Score=173.96 Aligned_cols=173 Identities=13% Similarity=0.154 Sum_probs=126.2
Q ss_pred cccccc--cccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 68 TTFDEF--PYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 68 vsf~~f--pyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
-+|++. .||+.+..-+ -+.+|+-+.-+.- .+ ...++.+||+||++|+++++|||+|++.|+.++.++...+
T Consensus 112 ~~f~~~~g~~~~~p~f~d----k~~~hi~kn~l~~--~~-ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL 184 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMD----KVAVHIAKNFLAL--PN-IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGEL 184 (413)
T ss_pred cchhhhcCccccCHHHHH----HHHHHHHhhhhhc--cC-CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHh
Confidence 356666 5666655433 3445555443311 11 2678899999999999999999999999999999999888
Q ss_pred chhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcc
Q 003231 146 SLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMS 225 (837)
Q Consensus 146 ~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (837)
..+| +|+
T Consensus 185 ~sk~---vGE---------------------------------------------------------------------- 191 (413)
T PLN00020 185 ESEN---AGE---------------------------------------------------------------------- 191 (413)
T ss_pred hcCc---CCc----------------------------------------------------------------------
Confidence 6555 444
Q ss_pred cccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhh--cCCcEEEEEccchhHhhhc--------HH-----HHHHH
Q 003231 226 SISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSIT--ETSSVILYLRDVDKLLFQS--------QR-----FYNLL 290 (837)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~--~~~p~Ilfi~di~~~l~~~--------~~-----~~~~l 290 (837)
...+|..+|..+...+ +.+|+||||||||.++.++ ++ +++++
T Consensus 192 -----------------------sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~ 248 (413)
T PLN00020 192 -----------------------PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIA 248 (413)
T ss_pred -----------------------HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHh
Confidence 3347888999998764 6789999999999976443 11 22322
Q ss_pred HHH----H------HhccCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHH
Q 003231 291 DKL----L------KKLSGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEE 350 (837)
Q Consensus 291 k~~----l------~~l~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~ 350 (837)
+.. + ..-..+|.||++ +|++..+|.+|.| ||... |.+|+.++|..||+.++.+
T Consensus 249 D~p~~v~l~G~w~~~~~~~~V~VIaT-----TNrpd~LDpALlRpGRfDk~--i~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 249 DNPTNVSLGGDWREKEEIPRVPIIVT-----GNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVVHGIFRD 313 (413)
T ss_pred cCCccccccccccccccCCCceEEEe-----CCCcccCCHhHcCCCCCCce--eCCCCHHHHHHHHHHHhcc
Confidence 210 0 011357889998 7999999999999 99964 5799999999999997643
No 88
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.8e-17 Score=170.89 Aligned_cols=229 Identities=16% Similarity=0.219 Sum_probs=174.9
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccc
Q 003231 67 KTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 67 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~ 146 (837)
..||.+++++ |+..+.+-+++-.+|.||++ |-.-=-..++++.|+||++.+++.||||.|+.-.|.||-+=.+.+-
T Consensus 181 ~Ety~diGGl--e~QiQEiKEsvELPLthPE~--YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 181 QETYADIGGL--ESQIQEIKESVELPLTHPEY--YEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred hhhhcccccH--HHHHHHHHHhhcCCCCCHHH--HHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 4589999999 99999999999999999998 4332346889999999999999999999999999999888777775
Q ss_pred hhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccc
Q 003231 147 LKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSS 226 (837)
Q Consensus 147 ~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (837)
-|+ .|.
T Consensus 257 Qky---lGd----------------------------------------------------------------------- 262 (440)
T KOG0726|consen 257 QKY---LGD----------------------------------------------------------------------- 262 (440)
T ss_pred HHH---hcc-----------------------------------------------------------------------
Confidence 433 122
Q ss_pred ccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHHhcc
Q 003231 227 ISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLKKLS 298 (837)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~~l~ 298 (837)
.-.++..||.|+.+- .|.|+||||||.+=..+ .+.-..+-.+|+.|.
T Consensus 263 ----------------------GpklvRqlF~vA~e~---apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQld 317 (440)
T KOG0726|consen 263 ----------------------GPKLVRELFRVAEEH---APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 317 (440)
T ss_pred ----------------------chHHHHHHHHHHHhc---CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhcc
Confidence 223899999999997 99999999999833221 122122224455554
Q ss_pred -----CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcC
Q 003231 299 -----GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAAN 371 (837)
Q Consensus 299 -----g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~ 371 (837)
|.|.||=| +|+....|.||.| |.-.+|++++||+.++.+||.+|+.+|... +
T Consensus 318 GFdsrgDvKvimA-----Tnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~----------------~ 376 (440)
T KOG0726|consen 318 GFDSRGDVKVIMA-----TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA----------------E 376 (440)
T ss_pred CccccCCeEEEEe-----cccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh----------------c
Confidence 47888766 8999999999998 999999999999999999999988766542 2
Q ss_pred CCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 372 DLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 372 ~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
++...+|-.--.. ||+++|..|.-.|--.+|. ..+..|+++||+.+..
T Consensus 377 dVnle~li~~kdd---lSGAdIkAictEaGllAlR--------erRm~vt~~DF~ka~e 424 (440)
T KOG0726|consen 377 DVNLEELIMTKDD---LSGADIKAICTEAGLLALR--------ERRMKVTMEDFKKAKE 424 (440)
T ss_pred cccHHHHhhcccc---cccccHHHHHHHHhHHHHH--------HHHhhccHHHHHHHHH
Confidence 2333333322223 6888888887777666653 3456699999999887
No 89
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.3e-16 Score=187.15 Aligned_cols=386 Identities=20% Similarity=0.247 Sum_probs=232.6
Q ss_pred CCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeec
Q 003231 63 GKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDV 142 (837)
Q Consensus 63 ~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~ 142 (837)
+.+..|+||+.+++ ++.++.|-+.+..+|-++++..... -..+++||++||++.+++..|+|||-..--..=-++
T Consensus 257 ~~~~~v~fd~vggl--~~~i~~LKEmVl~PLlyPE~f~~~~--itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kis- 331 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGL--ENYINQLKEMVLLPLLYPEFFDNFN--ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKIS- 331 (1080)
T ss_pred hhhcccCccccccH--HHHHHHHHHHHHhHhhhhhHhhhcc--cCCCcceeecCCCCCchhHHHHhhhhhhcccccccc-
Confidence 45678999999998 9999999999999999999833221 256788999999999999999999976422110000
Q ss_pred cccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCC
Q 003231 143 NDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNAS 222 (837)
Q Consensus 143 ~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (837)
-|+ + +|.|
T Consensus 332 -ffm-----------------r----------------------------------kgaD-------------------- 339 (1080)
T KOG0732|consen 332 -FFM-----------------R----------------------------------KGAD-------------------- 339 (1080)
T ss_pred -hhh-----------------h----------------------------------cCch--------------------
Confidence 000 0 1111
Q ss_pred CcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchh-------Hhhhc-----HHHHHHH
Q 003231 223 DMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDK-------LLFQS-----QRFYNLL 290 (837)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~-------~l~~~-----~~~~~~l 290 (837)
+.+.|.++..-=..=||+.+.+. +|.|+|+||||= +-.+- .-+..++
T Consensus 340 ------------------~lskwvgEaERqlrllFeeA~k~---qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLm 398 (1080)
T KOG0732|consen 340 ------------------CLSKWVGEAERQLRLLFEEAQKT---QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALM 398 (1080)
T ss_pred ------------------hhccccCcHHHHHHHHHHHHhcc---CceEEeccccccccccccchHHHhhhhHHHHHHHhc
Confidence 12568887666677788887776 999999999993 11111 1133334
Q ss_pred HHHHHhccCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 291 DKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 291 k~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
+++=++ |.|+|||| +|+++.+|.||.| ||-..+-+++|+-+.|.+|+.+|..+-... -...-..+...
T Consensus 399 dGldsR--gqVvvigA-----TnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~---i~~~l~~~la~ 468 (1080)
T KOG0732|consen 399 DGLDSR--GQVVVIGA-----TNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPP---ISRELLLWLAE 468 (1080)
T ss_pred cCCCCC--CceEEEcc-----cCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCC---CCHHHHHHHHH
Confidence 443344 79999999 9999999999987 999999999999999999999986443321 11111222234
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCcc-cc-CCce-------eecHHhHHHHHHHhhhhhhcc
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPE-YR-NGKL-------VISSKSLSHGLSIFQECKRFG 439 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~-~~-~~~~-------~i~~~~~~~~l~~~~~~~~~~ 439 (837)
.+.|+.+.||..+|-. |+=-++.+.- |. |. .+++ .|..++|-+|+...=+
T Consensus 469 ~t~gy~gaDlkaLCTe---------------Aal~~~~r~~-Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p----- 527 (1080)
T KOG0732|consen 469 ETSGYGGADLKALCTE---------------AALIALRRSF-PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP----- 527 (1080)
T ss_pred hccccchHHHHHHHHH---------------Hhhhhhcccc-CeeecccccccccchhhhhhhHhhhhhhhccCC-----
Confidence 4455666666666633 3222222221 22 22 3333 3444555555541000
Q ss_pred ccccccccccccccccchhhhhhhccCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCC
Q 003231 440 KDSLKMETNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANE 519 (837)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~ 519 (837)
+.... . ..-+.|.+....+-. ........++
T Consensus 528 --------------------------------s~~R~-~-------~~~s~Pl~~~~~~ll-~~~~~~~~iq-------- 558 (1080)
T KOG0732|consen 528 --------------------------------SSRRS-S-------VIFSRPLSTYLKPLL-PFQDALEDIQ-------- 558 (1080)
T ss_pred --------------------------------CCCcc-c-------cCCCCCCCcceeccc-chHHHHHHhh--------
Confidence 00000 0 000111111111100 0111111111
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchh-hcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDL-FKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-GASFINVSMSTITS 597 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~-~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-g~~~i~v~~s~l~s 597 (837)
.+.-.......+.+...+.++.-+. |.-.. --...+++.|+.|.|-+.+..+|-+.+ +.++.....+.+..
T Consensus 559 ------~~~~va~~~~k~~e~~~~~v~~~e~~~~i~l-ic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~ 631 (1080)
T KOG0732|consen 559 ------GLMDVASSMAKIEEHLKLLVRSFESNFAIRL-ICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLS 631 (1080)
T ss_pred ------cchhHHhhhhhHHHHhHHHHHhhhcccchhh-hcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHh
Confidence 1222223333333333221211111 11111 112348999999999999999998877 67777777777766
Q ss_pred cc-ccccHHHHHHHHHHHHhcCCeEEEecccccccCC
Q 003231 598 KW-FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 598 ~~-~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~ 633 (837)
.. ....+..+..+|..|++..||||||-++|.....
T Consensus 632 d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~ 668 (1080)
T KOG0732|consen 632 DEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARV 668 (1080)
T ss_pred ccccccHHHHHHHHHHHHhccCCceeeccchhhhhhc
Confidence 65 5667888999999999999999999999987543
No 90
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.67 E-value=1.2e-15 Score=182.58 Aligned_cols=238 Identities=16% Similarity=0.213 Sum_probs=176.1
Q ss_pred cccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEE
Q 003231 59 QVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLL 138 (837)
Q Consensus 59 ~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll 138 (837)
....+..+.++|+++.++ +..+..|.+.+.. ++.++..... =...+++|||+||+++++++|||+||++.+++++
T Consensus 140 ~~~~~~~~~~~~~di~g~--~~~~~~l~~i~~~-~~~~~~~~~~--~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~ 214 (644)
T PRK10733 140 RMLTEDQIKTTFADVAGC--DEAKEEVAELVEY-LREPSRFQKL--GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 214 (644)
T ss_pred cccCchhhhCcHHHHcCH--HHHHHHHHHHHHH-hhCHHHHHhc--CCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 455668889999999998 8899888887765 4444332111 1245678999999999999999999999999999
Q ss_pred EeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccc
Q 003231 139 LLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHR 218 (837)
Q Consensus 139 ~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (837)
.++.++|...+ .|.
T Consensus 215 ~is~~~~~~~~---~g~--------------------------------------------------------------- 228 (644)
T PRK10733 215 TISGSDFVEMF---VGV--------------------------------------------------------------- 228 (644)
T ss_pred EEehHHhHHhh---hcc---------------------------------------------------------------
Confidence 99888775321 010
Q ss_pred cCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHH
Q 003231 219 RNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLL 290 (837)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~l 290 (837)
....+..+|+.+.. ..|+||||||||.+...+ .+.-..+
T Consensus 229 ------------------------------~~~~~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~l 275 (644)
T PRK10733 229 ------------------------------GASRVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTL 275 (644)
T ss_pred ------------------------------cHHHHHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHH
Confidence 00134445655544 489999999999975432 1222233
Q ss_pred HHHHHhcc-----CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhH
Q 003231 291 DKLLKKLS-----GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNH 363 (837)
Q Consensus 291 k~~l~~l~-----g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~ 363 (837)
..+|..+. .+|++||+ +|++..+|+||.| ||..+|.|++|+.++|.+||+.++.+.
T Consensus 276 n~lL~~mdg~~~~~~vivIaa-----TN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~------------ 338 (644)
T PRK10733 276 NQMLVEMDGFEGNEGIIVIAA-----TNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV------------ 338 (644)
T ss_pred HHHHHhhhcccCCCCeeEEEe-----cCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC------------
Confidence 33333332 26889998 8899999999998 999999999999999999999875331
Q ss_pred HHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHh
Q 003231 364 IAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 364 i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
-...++++..|+..+.. |++++|..++..|+.++...+ +-.|+..+|+.++..+
T Consensus 339 ----~l~~~~d~~~la~~t~G---~sgadl~~l~~eAa~~a~r~~--------~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 339 ----PLAPDIDAAIIARGTPG---FSGADLANLVNEAALFAARGN--------KRVVSMVEFEKAKDKI 392 (644)
T ss_pred ----CCCCcCCHHHHHhhCCC---CCHHHHHHHHHHHHHHHHHcC--------CCcccHHHHHHHHHHH
Confidence 12235677778888999 999999999999999887543 3358999999999844
No 91
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.2e-15 Score=175.44 Aligned_cols=192 Identities=20% Similarity=0.276 Sum_probs=145.3
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+..++||. +|++|+|++.+++.|..++... +.++.+||+||+|+|||++|+++|+.++
T Consensus 4 ~LarKyRPk---------tFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 4 VLARKYRPR---------NFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred hHHHHhCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356678877 9999999999999999988642 4567889999999999999999999986
Q ss_pred C------------------------cEEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCCC
Q 003231 585 A------------------------SFINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~------------------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~~ 636 (837)
+ .++.+++++- .....++.+...+.. ....|+||||+|.|..
T Consensus 63 C~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---- 132 (702)
T PRK14960 63 CETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---- 132 (702)
T ss_pred CCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH----
Confidence 5 3344444321 123345666555432 2457999999998842
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..++.. ...+.+|++|+.+..+.+.+++|| .++.|..++.++....++.++.++++ ++
T Consensus 133 --------~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~ 199 (702)
T PRK14960 133 --------HSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQ 199 (702)
T ss_pred --------HHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 2345666666542 344677777788888999999999 88999999999999999999998876 77
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
..+..|+..+.| +.+++.+++..+..
T Consensus 200 eAL~~IA~~S~G-dLRdALnLLDQaIa 225 (702)
T PRK14960 200 DAIWQIAESAQG-SLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 888899999886 67777777765543
No 92
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.4e-15 Score=179.69 Aligned_cols=192 Identities=21% Similarity=0.274 Sum_probs=142.3
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..+..++||. +|++|+|++.+++.|+.++... +.++.+||+||||||||++|+++|+.+
T Consensus 4 ~~LaeKyRP~---------tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 4 QVLARKWRPA---------TFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred hhHHHHhCCC---------CHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3466788887 9999999999999999888652 345567999999999999999999999
Q ss_pred CCcE------------------------EEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCC
Q 003231 584 GASF------------------------INVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~~~------------------------i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~ 635 (837)
++.- ++++..+ ......++.+...+.. ....|+||||+|.|..
T Consensus 63 nce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~--- 133 (944)
T PRK14949 63 NCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR--- 133 (944)
T ss_pred cCccCCCCCCCCCchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---
Confidence 7641 1111110 0112335555554432 2357999999999832
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.|+..|+. ++..+++|++|+.+..+.+.+++|| .++.|..++.++....|+.++..+++ +
T Consensus 134 ---------eAqNALLKtLEE----PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~e 199 (944)
T PRK14949 134 ---------SSFNALLKTLEE----PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFE 199 (944)
T ss_pred ---------HHHHHHHHHHhc----cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 455667766654 3345667777888888999999999 88999999999999999999887665 6
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
+..+..|+..+.| +.+++.++|..+.
T Consensus 200 deAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 200 AEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7788899999887 5667777776544
No 93
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.66 E-value=1.5e-15 Score=175.25 Aligned_cols=194 Identities=22% Similarity=0.337 Sum_probs=127.4
Q ss_pred Ccccccc-ccchH--HHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 003231 521 GVTFADI-GALNE--IKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSM 592 (837)
Q Consensus 521 ~v~fddI-iG~d~--vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~ 592 (837)
..+|++. +|..+ +...+..+... +. ...++++|+||||+|||+|++++|+++ +..++++++
T Consensus 118 ~~tfd~fv~g~~n~~a~~~~~~~~~~----~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 118 KYTFDNFVVGKSNRLAHAAALAVAEN----PG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCcccccccCCCcHHHHHHHHHHHhC----cC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 4578884 45433 34444443322 11 234679999999999999999999988 567889999
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecC
Q 003231 593 STITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATN 672 (837)
Q Consensus 593 s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN 672 (837)
.++...+..........-|..... .+.+|+|||++.+.+.. .....|+..++...... ..+||+++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~----------~~~~~l~~~~n~l~~~~--~~iiits~~ 253 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE----------RTQEEFFHTFNALHEAG--KQIVLTSDR 253 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH----------HHHHHHHHHHHHHHHCC--CcEEEECCC
Confidence 887665443322111122322222 46899999999885432 11223333333332222 235555555
Q ss_pred CCCC---CcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 673 RPFD---LDEAIIRRFE--RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 673 ~~~~---Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
.|.. +++.+++||. ..+.+..|+.++|..|++..+...++ ++..++.||..+.| +.+.|..++...
T Consensus 254 ~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 254 PPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred CHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 5544 6789999995 46889999999999999999887654 88889999998875 566666665543
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.8e-15 Score=174.27 Aligned_cols=193 Identities=18% Similarity=0.236 Sum_probs=146.5
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.-+..++||. +|+||+|++.+++.|..++... +.++.+||+||||||||++|+.+|+.+
T Consensus 4 ~~l~~kyRP~---------~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 4 QVLARKWRPR---------CFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred hhHHHHHCCC---------CHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 3577888888 9999999999999999988652 345678999999999999999999998
Q ss_pred CCc------------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCC
Q 003231 584 GAS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~ 635 (837)
++. +++++.+. ......++.+.+.+.. ....|+||||+|.|..
T Consensus 63 ~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--- 133 (509)
T PRK14958 63 NCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--- 133 (509)
T ss_pred cCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---
Confidence 652 44454432 1223345666655432 2346999999999843
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.|+..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++..+++ +
T Consensus 134 ---------~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~ 199 (509)
T PRK14958 134 ---------HSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFE 199 (509)
T ss_pred ---------HHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2345666666542 345777777788888998999999 78899999999999999999988876 6
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
+..+..++..+.| +.+++.+++..+..
T Consensus 200 ~~al~~ia~~s~G-slR~al~lLdq~ia 226 (509)
T PRK14958 200 NAALDLLARAANG-SVRDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHHHHHh
Confidence 7778889988876 77788888866543
No 95
>PLN03025 replication factor C subunit; Provisional
Probab=99.65 E-value=5.2e-15 Score=163.35 Aligned_cols=186 Identities=22% Similarity=0.213 Sum_probs=134.7
Q ss_pred HHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG- 584 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg- 584 (837)
|.+++||. +|++++|++++++.|+.++.. ....++||+||||||||++|+++|+++.
T Consensus 3 w~~kyrP~---------~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 3 WVEKYRPT---------KLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred hhhhcCCC---------CHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 67788888 899999999999999887654 1234799999999999999999999982
Q ss_pred ----CcEEEEeccccccccccccHHHHHHHHHHHHh-------cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHh
Q 003231 585 ----ASFINVSMSTITSKWFGEDEKNVRALFTLAAK-------VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTH 653 (837)
Q Consensus 585 ----~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~-------~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ 653 (837)
..++.++.++..+ ...++..+..... ..+.|++|||+|.|.. ...+.|+..
T Consensus 61 ~~~~~~~~eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------~aq~aL~~~ 122 (319)
T PLN03025 61 PNYKEAVLELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------GAQQALRRT 122 (319)
T ss_pred ccCccceeeeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------HHHHHHHHH
Confidence 3466677665322 1123333222111 2357999999999843 112334444
Q ss_pred hccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHH
Q 003231 654 WDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSD 731 (837)
Q Consensus 654 ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~D 731 (837)
++.. +..+.+|.+||.+..+.+++++|+ ..+.|+.|+.++...+++..+.++++ ++..+..++..+.| ..+.
T Consensus 123 lE~~----~~~t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~ 196 (319)
T PLN03025 123 MEIY----SNTTRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQ 196 (319)
T ss_pred Hhcc----cCCceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 4322 223456778888889999999999 78999999999999999999988876 78888999988876 4455
Q ss_pred HHHHHH
Q 003231 732 LKNLCV 737 (837)
Q Consensus 732 L~~L~~ 737 (837)
+.+.++
T Consensus 197 aln~Lq 202 (319)
T PLN03025 197 ALNNLQ 202 (319)
T ss_pred HHHHHH
Confidence 555555
No 96
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.65 E-value=1.5e-15 Score=177.98 Aligned_cols=204 Identities=21% Similarity=0.319 Sum_probs=143.0
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
.+.|.+++|+. +|++++|++..++.+...+.. ..+.++||+||||||||++|++++..
T Consensus 52 ~~~~~~~~rp~---------~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 52 TEPLSEKTRPK---------SFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred cchHHHhhCcC---------CHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56788888887 899999999999998866432 23568999999999999999999865
Q ss_pred h----------CCcEEEEecccc-------ccccccccHHHH----------------HHHHHHHHhcCCeEEEeccccc
Q 003231 583 A----------GASFINVSMSTI-------TSKWFGEDEKNV----------------RALFTLAAKVSPTIIFVDEVDS 629 (837)
Q Consensus 583 l----------g~~~i~v~~s~l-------~s~~~G~~e~~l----------------~~lf~~A~~~~psVLfIDEID~ 629 (837)
+ +.+|+.++|... ....+|.....+ ...+. +...++||||||+.
T Consensus 110 ~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~ 186 (531)
T TIGR02902 110 AKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGE 186 (531)
T ss_pred hhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhh
Confidence 3 468999998642 111111100000 00111 22348999999999
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHhhcccc-------------------------ccCCceEEEEEecCCCCCCcHHHHHH
Q 003231 630 MLGQRTRVGEHEAMRKIKNEFMTHWDGLL-------------------------TRNGERILVLAATNRPFDLDEAIIRR 684 (837)
Q Consensus 630 L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~-------------------------~~~~~~vlVIaTTN~~~~Ld~aL~rR 684 (837)
|.+ ...+.|+..++... ..+..-.+|++||+.++.+++++++|
T Consensus 187 L~~------------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR 254 (531)
T TIGR02902 187 LHP------------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSR 254 (531)
T ss_pred CCH------------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhh
Confidence 853 22333333332210 00111245567778899999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003231 685 FERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 685 F~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r 746 (837)
| ..+.|+.++.+++..|++..+++.++ ++..++.++..+. +++++.++++.|+..+..+
T Consensus 255 ~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~ 315 (531)
T TIGR02902 255 C-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE 315 (531)
T ss_pred h-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC
Confidence 9 67889999999999999999988765 6777777776554 7899999999998777553
No 97
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.8e-15 Score=175.67 Aligned_cols=192 Identities=22% Similarity=0.307 Sum_probs=143.7
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..+..++||. +|++|+|++.+++.|...+... +.++.+||+||+|+|||++|+.+|+.+
T Consensus 4 ~~La~KyRP~---------~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 4 QVLARKWRPQ---------TFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred hhHHHHhCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3467788887 9999999999999999888652 345568999999999999999999998
Q ss_pred CCc------------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCC
Q 003231 584 GAS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~ 635 (837)
++. ++.++... ......++.+...+.. ....|+||||+|.|..
T Consensus 63 ~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~--- 133 (647)
T PRK07994 63 NCETGITATPCGECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR--- 133 (647)
T ss_pred hhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---
Confidence 663 23333321 0122335555555432 2457999999998842
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...|.|+..++. ++..+++|.+|+.+..+.+.+++|| ..+.|..++.++....|+.++..+++ +
T Consensus 134 ---------~a~NALLKtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e 199 (647)
T PRK07994 134 ---------HSFNALLKTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFE 199 (647)
T ss_pred ---------HHHHHHHHHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 345667666654 3455777777888889999999998 89999999999999999999887765 6
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
+..+..|+..+.| +.++..+++..|.
T Consensus 200 ~~aL~~Ia~~s~G-s~R~Al~lldqai 225 (647)
T PRK07994 200 PRALQLLARAADG-SMRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7778889999887 5666666765543
No 98
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.9e-15 Score=172.57 Aligned_cols=189 Identities=17% Similarity=0.237 Sum_probs=138.6
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.|..++||. +|++++|++.+++.|..++... +.++++||+||||||||++|+++|+.++
T Consensus 3 ~l~~kyRP~---------~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 3 ALYRKYRPK---------TFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred hhHHHHCCC---------CHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466788888 8999999999999998887652 3556799999999999999999999986
Q ss_pred C------------------------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCC
Q 003231 585 A------------------------SFINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~------------------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~ 636 (837)
+ .++.++++.- .....++.+.+.+... ...||||||+|.|..
T Consensus 62 ~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---- 131 (472)
T PRK14962 62 CENRKGVEPCNECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---- 131 (472)
T ss_pred cccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH----
Confidence 5 3455544321 1123455555554432 346999999998832
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..++. ++..+++|++|+.+..+++++++|| ..+.|..++.++...+++..+...++ ++
T Consensus 132 --------~a~~~LLk~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~ 198 (472)
T PRK14962 132 --------EAFNALLKTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDR 198 (472)
T ss_pred --------HHHHHHHHHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCH
Confidence 233455555554 2334666666667788999999999 68999999999999999999887664 78
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
..++.|+..+.| ..+++.+++..
T Consensus 199 eal~~Ia~~s~G-dlR~aln~Le~ 221 (472)
T PRK14962 199 EALSFIAKRASG-GLRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHH
Confidence 888999998876 44455555544
No 99
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.5e-15 Score=165.35 Aligned_cols=192 Identities=22% Similarity=0.289 Sum_probs=141.7
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..+.+++||. +|++|+|++.+++.+..++... +.++.+||+||||+|||++|+++|+.+
T Consensus 4 ~~l~~kyrP~---------~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 4 QILARKWRPQ---------YFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred HHHHHHhCCC---------chhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 3467788887 8999999999999999888642 345678999999999999999999998
Q ss_pred CCc------------------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCC
Q 003231 584 GAS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~ 635 (837)
.+. ++.++++. ......++.+.+.+... ...|+||||+|.+..
T Consensus 63 ~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--- 133 (363)
T PRK14961 63 NCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--- 133 (363)
T ss_pred cCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---
Confidence 642 22222211 01223455666554432 246999999998832
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.|+..++. ++..+.+|.+|+.++.+.+.+++|+ ..+.|+.|+.++...+++..+...+. +
T Consensus 134 ---------~a~naLLk~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~ 199 (363)
T PRK14961 134 ---------HSFNALLKTLEE----PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTD 199 (363)
T ss_pred ---------HHHHHHHHHHhc----CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 233556665554 2334666777777888999999999 78899999999999999999888764 7
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
+..+..++..+.| +.+++.+++..++
T Consensus 200 ~~al~~ia~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 200 EYALKLIAYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7888889998886 6777777776654
No 100
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.64 E-value=3.9e-15 Score=169.63 Aligned_cols=170 Identities=22% Similarity=0.356 Sum_probs=115.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHH-HHHHHHHHHHhcCCeEEEeccccccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTITSKWFGEDEK-NVRALFTLAAKVSPTIIFVDEVDSML 631 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l~s~~~G~~e~-~l~~lf~~A~~~~psVLfIDEID~L~ 631 (837)
...+++|+||||+|||+|++++++++ +..++++++.++...+...... .+.. |..... .+.+|+|||++.+.
T Consensus 135 ~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~dlLiiDDi~~l~ 212 (405)
T TIGR00362 135 AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEE-FKEKYR-SVDLLLIDDIQFLA 212 (405)
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHH-HHHHHH-hCCEEEEehhhhhc
Confidence 34579999999999999999999987 6788999988876544322111 1112 222222 35799999999886
Q ss_pred CCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC---CCcHHHHHHHHH--hhhcCCCCHHHHHHHHHHH
Q 003231 632 GQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF---DLDEAIIRRFER--RIMVGLPSAENREMILKTL 706 (837)
Q Consensus 632 ~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~---~Ld~aL~rRF~~--~I~~~~P~~eer~~IL~~~ 706 (837)
+.. .....|...++..... ...+||+++..|. .+++.+++||.. .+.++.|+.++|..|++..
T Consensus 213 ~~~----------~~~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 213 GKE----------RTQEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CCH----------HHHHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 432 1112333333333222 1235555555554 356889999964 6899999999999999999
Q ss_pred HhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003231 707 LAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 707 l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
+...++ ++..++.||..+.+ +.++|..++......
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 987765 78889999998885 667777776654433
No 101
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.64 E-value=4.9e-15 Score=156.36 Aligned_cols=185 Identities=22% Similarity=0.315 Sum_probs=137.5
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...|.+++||. +|+++.|++.+++.|...+.. +...++|||||||||||+.|+++|++
T Consensus 23 ~~swteKYrPk---------t~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 23 HRSWTEKYRPK---------TFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred ccchHHHhCCC---------cHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 34588899988 999999999999999988854 34568999999999999999999999
Q ss_pred hCC------cEEEEecccccccccccc-HHHHHHHHHHH-----HhcC-CeEEEecccccccCCCCCcchHHHHHHHHHH
Q 003231 583 AGA------SFINVSMSTITSKWFGED-EKNVRALFTLA-----AKVS-PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNE 649 (837)
Q Consensus 583 lg~------~~i~v~~s~l~s~~~G~~-e~~l~~lf~~A-----~~~~-psVLfIDEID~L~~~r~~~~~~~~~~~i~~~ 649 (837)
+.. .+...+.++..+..++.. -+...++.... +-++ +-||+|||+|.|.. ...+.
T Consensus 81 L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts------------daq~a 148 (346)
T KOG0989|consen 81 LNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS------------DAQAA 148 (346)
T ss_pred hcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH------------HHHHH
Confidence 965 234455555444332211 11111111111 1112 26999999999853 34455
Q ss_pred HHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCC
Q 003231 650 FMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEG 726 (837)
Q Consensus 650 Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G 726 (837)
|...|+.. ...+.+|..||....+...+.+|+ ..+.|+....+.....|+.+..++++ ++..++.++..++|
T Consensus 149 Lrr~mE~~----s~~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 149 LRRTMEDF----SRTTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred HHHHHhcc----ccceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 55555552 345788999999999999999999 67788888999999999999999987 78889999998887
No 102
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=6.1e-15 Score=180.87 Aligned_cols=183 Identities=20% Similarity=0.331 Sum_probs=139.4
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.+++++|+++.+.++.+.+.. +...+++|+||||||||++|+.+|..+ +.+++.+++
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 788999999987777665543 334689999999999999999999986 356788888
Q ss_pred ccccc--ccccccHHHHHHHHHHHHhc-CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEE
Q 003231 593 STITS--KWFGEDEKNVRALFTLAAKV-SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669 (837)
Q Consensus 593 s~l~s--~~~G~~e~~l~~lf~~A~~~-~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIa 669 (837)
+.+.. .+.|+.+..++.+++.+... .++|||||||+.+.+.+...+..+.. +.|...+. ...+.+|+
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l~------~G~l~~Ig 321 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPALA------RGELRTIA 321 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHhh------CCCeEEEE
Confidence 87763 58889999999999998753 57899999999998765433322222 22322222 23477888
Q ss_pred ecCC-----CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh----cCC--ChhhHHHHHHHcCCCCH
Q 003231 670 ATNR-----PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK----EKV--EDLDFKELAAMTEGYSG 729 (837)
Q Consensus 670 TTN~-----~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~----~~~--~d~dl~~LA~~t~G~sg 729 (837)
||+. ...+|++|.||| ..|.++.|+.+++..||+.+... +++ .+..+..++.++.+|..
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 8875 356899999999 58999999999999998766543 233 78889999999887653
No 103
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1e-14 Score=171.37 Aligned_cols=192 Identities=21% Similarity=0.299 Sum_probs=146.4
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
-+..++||. +|+||+|++.+++.|..++... +.++.+||+||+|||||++|+.+|+.++
T Consensus 5 vLarKYRP~---------tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 5 VLARKWRPK---------TFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred hHHHHhCCC---------CHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 466788887 9999999999999999988652 4567899999999999999999999885
Q ss_pred Cc------------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCCC
Q 003231 585 AS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~~ 636 (837)
+. +++++... ......++.+++.+.. ....||||||+|.|..
T Consensus 64 C~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---- 133 (709)
T PRK08691 64 CENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---- 133 (709)
T ss_pred ccCCCCCCCCcccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH----
Confidence 43 12222211 1223456667665532 2357999999998731
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..++. ....+.+|++|+.+..+.+.+++|| ..+.|..++.++...+|+.++..+++ ++
T Consensus 134 --------~A~NALLKtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~ 200 (709)
T PRK08691 134 --------SAFNAMLKTLEE----PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEP 200 (709)
T ss_pred --------HHHHHHHHHHHh----CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCH
Confidence 234566666654 2345777888888999999999999 88899999999999999999998876 67
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
..+..|++.+.| +.+++.+++..+..
T Consensus 201 eAL~~Ia~~A~G-slRdAlnLLDqaia 226 (709)
T PRK08691 201 PALQLLGRAAAG-SMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 788999999875 67888888876654
No 104
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.63 E-value=1.4e-14 Score=165.44 Aligned_cols=187 Identities=28% Similarity=0.455 Sum_probs=136.0
Q ss_pred HHHhhCCCccCCCCCCccccccccchHHHHH---HHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALNEIKES---LQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~---L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
|.+++||. +|++++|+++++.. +..++.. ....+++|+||||||||++|+++|+.
T Consensus 2 la~~~RP~---------~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 2 LAERMRPK---------TLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred hhhhhCCC---------CHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56678877 89999999999766 7777643 23458999999999999999999999
Q ss_pred hCCcEEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc
Q 003231 583 AGASFINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL 658 (837)
Q Consensus 583 lg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~ 658 (837)
++.+|+.+++... ....++.+++.+.. ....||||||+|.+.. ...+.|+..++.
T Consensus 60 ~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------~~q~~LL~~le~-- 118 (413)
T PRK13342 60 TDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------AQQDALLPHVED-- 118 (413)
T ss_pred hCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------HHHHHHHHHhhc--
Confidence 9999999987642 22345556655532 2568999999998742 223344444432
Q ss_pred ccCCceEEEEEec--CCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc-----CCChhhHHHHHHHcCCCCHHH
Q 003231 659 TRNGERILVLAAT--NRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE-----KVEDLDFKELAAMTEGYSGSD 731 (837)
Q Consensus 659 ~~~~~~vlVIaTT--N~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~-----~~~d~dl~~LA~~t~G~sg~D 731 (837)
..+++|++| |....+++++++|| ..+.|..++.++...+++..+... .+++..++.++..+.| ..+.
T Consensus 119 ----~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~ 192 (413)
T PRK13342 119 ----GTITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARR 192 (413)
T ss_pred ----CcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHH
Confidence 235555543 44568999999999 788999999999999999887652 3466777888888865 5566
Q ss_pred HHHHHHHHHH
Q 003231 732 LKNLCVTAAY 741 (837)
Q Consensus 732 L~~L~~~Aa~ 741 (837)
+.+++..++.
T Consensus 193 aln~Le~~~~ 202 (413)
T PRK13342 193 ALNLLELAAL 202 (413)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 105
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.3e-15 Score=175.54 Aligned_cols=216 Identities=20% Similarity=0.290 Sum_probs=150.2
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc--------
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-------- 597 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s-------- 597 (837)
|..|++++|++|.+++....+.+. ....-++|+||||+|||+|++.||+.+|..|++++...+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 479999999999999976433322 22356899999999999999999999999999999876543
Q ss_pred -ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHH-----HHHHHhhccccccCCceEEEEEec
Q 003231 598 -KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIK-----NEFMTHWDGLLTRNGERILVLAAT 671 (837)
Q Consensus 598 -~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~-----~~Ll~~ld~~~~~~~~~vlVIaTT 671 (837)
.|+|...+++-+-+..|....| |++|||||+|...-.+ ....++-.++ +.|..+.-... -+-..|++|||+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rG-DPaSALLEVLDPEQN~~F~DhYLev~-yDLS~VmFiaTA 473 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRG-DPASALLEVLDPEQNNTFSDHYLEVP-YDLSKVMFIATA 473 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCC-ChHHHHHhhcCHhhcCchhhccccCc-cchhheEEEeec
Confidence 3889888888777777777664 8999999999754222 1111221111 12222221111 122479999999
Q ss_pred CCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh-----hcCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003231 672 NRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLA-----KEKVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 672 N~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~-----~~~~~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r 746 (837)
|..+.++.+|++|+ .+|.+.-++.++..+|.+.+|- .+++....+. .++.---.-|+...++|..+.+.|
T Consensus 474 Nsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~----i~d~ai~~iI~~YTREAGVR~LeR 548 (782)
T COG0466 474 NSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELT----ITDEAIKDIIRYYTREAGVRNLER 548 (782)
T ss_pred CccccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCcccee----ecHHHHHHHHHHHhHhhhhhHHHH
Confidence 99999999999999 8999999999999999987753 3333211110 000001123455667788888888
Q ss_pred HHHHHhhHhH
Q 003231 747 LIQEERKKDM 756 (837)
Q Consensus 747 ~~~~~~~~~~ 756 (837)
.+.+...+..
T Consensus 549 ~i~ki~RK~~ 558 (782)
T COG0466 549 EIAKICRKAA 558 (782)
T ss_pred HHHHHHHHHH
Confidence 8777665544
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=9.5e-15 Score=167.83 Aligned_cols=191 Identities=20% Similarity=0.269 Sum_probs=146.5
Q ss_pred HHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA 585 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~ 585 (837)
+..++||. +|+||+|++.+++.|..++... +.++++||+||+|+|||++|+.+|+.+++
T Consensus 3 la~KyRP~---------~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 3 LALKYRPS---------SFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred hhHHhCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 45677877 9999999999999998887652 45678999999999999999999997632
Q ss_pred ------------------------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCc
Q 003231 586 ------------------------SFINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRV 637 (837)
Q Consensus 586 ------------------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~ 637 (837)
.++++++++- .....++.+.+.+... .+.|+||||+|.|..
T Consensus 62 ~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----- 130 (491)
T PRK14964 62 SNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN----- 130 (491)
T ss_pred cCCCCCCCccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----
Confidence 3455555421 2234567777666543 356999999998832
Q ss_pred chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Chh
Q 003231 638 GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDL 715 (837)
Q Consensus 638 ~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~ 715 (837)
...+.|+..++. ++..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++.+++. ++.
T Consensus 131 -------~A~NaLLK~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e 198 (491)
T PRK14964 131 -------SAFNALLKTLEE----PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE 198 (491)
T ss_pred -------HHHHHHHHHHhC----CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH
Confidence 234566666654 2345677777788888999999999 78899999999999999999988776 788
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 716 DFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 716 dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
.+..|+..+.| +.+++.+++..++.
T Consensus 199 AL~lIa~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 199 SLKLIAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 88999999876 77777777766654
No 107
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.63 E-value=4.8e-15 Score=167.89 Aligned_cols=220 Identities=20% Similarity=0.270 Sum_probs=142.5
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcC---CCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKG---GLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGE 602 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~---~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s-~~~G~ 602 (837)
|+|++++++.+..++..+.++-..... ....+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999998877543322211100 11124578999999999999999999999999999999998764 57777
Q ss_pred cHHH-HHHHHHH----HHhcCCeEEEecccccccCCCCCcch--HHHHHHHHHHHHHhhccccc---------cCCceEE
Q 003231 603 DEKN-VRALFTL----AAKVSPTIIFVDEVDSMLGQRTRVGE--HEAMRKIKNEFMTHWDGLLT---------RNGERIL 666 (837)
Q Consensus 603 ~e~~-l~~lf~~----A~~~~psVLfIDEID~L~~~r~~~~~--~~~~~~i~~~Ll~~ld~~~~---------~~~~~vl 666 (837)
.... +..++.. ..+..++||||||||++...+.++.. ......+.+.|+..|++... .+....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 5433 4444432 23446799999999999765332111 11112467788888875421 1112356
Q ss_pred EEEecCCCC----------------------------------------------------CCcHHHHHHHHHhhhcCCC
Q 003231 667 VLAATNRPF----------------------------------------------------DLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 667 VIaTTN~~~----------------------------------------------------~Ld~aL~rRF~~~I~~~~P 694 (837)
+|.|+|-.+ .+.|+|+.|++.++.|..+
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 666665511 1467888889989999999
Q ss_pred CHHHHHHHHHH----HHh-------hcCC----ChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Q 003231 695 SAENREMILKT----LLA-------KEKV----EDLDFKELAAMT--EGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 695 ~~eer~~IL~~----~l~-------~~~~----~d~dl~~LA~~t--~G~sg~DL~~L~~~Aa~~av~r 746 (837)
+.+++.+|+.. +++ ..++ ++..++.|++.. .++-.+.|+.++.......+.+
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 99999999872 322 2222 556667777652 2444555665555544444433
No 108
>PRK04195 replication factor C large subunit; Provisional
Probab=99.63 E-value=5.7e-15 Score=171.77 Aligned_cols=183 Identities=28% Similarity=0.428 Sum_probs=136.9
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.|.++++|. +|++|+|++.+++.|..++..... + .+++++||+||||||||++|+++|++++
T Consensus 3 ~W~eKyrP~---------~l~dlvg~~~~~~~l~~~l~~~~~------g---~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 3 PWVEKYRPK---------TLSDVVGNEKAKEQLREWIESWLK------G---KPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CchhhcCCC---------CHHHhcCCHHHHHHHHHHHHHHhc------C---CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 366778877 899999999999999999865321 1 3478899999999999999999999999
Q ss_pred CcEEEEeccccccccccccHHHHHHHHHHHHh------cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc
Q 003231 585 ASFINVSMSTITSKWFGEDEKNVRALFTLAAK------VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL 658 (837)
Q Consensus 585 ~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~------~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~ 658 (837)
++++.+++++.... ..+..+...+.. ..+.||+|||+|.+.+..+. ...+.++..++.
T Consensus 65 ~~~ielnasd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~--------~~~~aL~~~l~~-- 128 (482)
T PRK04195 65 WEVIELNASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDR--------GGARAILELIKK-- 128 (482)
T ss_pred CCEEEEcccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccch--------hHHHHHHHHHHc--
Confidence 99999999875422 223333333322 24679999999998652211 122334444432
Q ss_pred ccCCceEEEEEecCCCCCCcH-HHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCC
Q 003231 659 TRNGERILVLAATNRPFDLDE-AIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEG 726 (837)
Q Consensus 659 ~~~~~~vlVIaTTN~~~~Ld~-aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G 726 (837)
.+..+|+++|.+..+.+ .+++|+ ..|.|+.|+..++..+++.++..+++ ++..++.|+..+.|
T Consensus 129 ----~~~~iIli~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 129 ----AKQPIILTANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred ----CCCCEEEeccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 12356778898888887 677777 78999999999999999999988776 77788899988776
No 109
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.2e-14 Score=166.51 Aligned_cols=229 Identities=21% Similarity=0.325 Sum_probs=147.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r 634 (837)
+.++++||||+|+|||+|++++|+++ +..++++++.++...+.......-...|..... .+.+|+|||++.+.+..
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~ 218 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG 218 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh
Confidence 34679999999999999999999876 788899988776554322211111123333332 46899999999885422
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC---CCCcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhh
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP---FDLDEAIIRRFE--RRIMVGLPSAENREMILKTLLAK 709 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~---~~Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~ 709 (837)
. ..+....+++.+. .. + +.+|++++..| ..+++.+++||. ..+.+..|+.++|..|++..+..
T Consensus 219 ~---~qeelf~l~N~l~-------~~-~-k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 A---TQEEFFHTFNSLH-------TE-G-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred h---hHHHHHHHHHHHH-------HC-C-CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 1222222222221 11 1 24545444445 356789999995 67788899999999999999887
Q ss_pred cCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhcc
Q 003231 710 EKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYR-PVRELIQEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITL 786 (837)
Q Consensus 710 ~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~-av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 786 (837)
.++ ++..++.|+....+ ..+.|.+.+...+.. +..+ ...
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~-------------------------------------~~~ 328 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKK-------------------------------------LSH 328 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH-------------------------------------hhC
Confidence 765 78888889988775 445555554444322 1111 233
Q ss_pred CCCCHHHHHHHHHHhhhccc-ccccchhhhHHHHHhhcC------CCcccc-----cccccCC
Q 003231 787 RPLNMEDMRQAKNQVAASFA-SEGSVMNELKQWNDLYGE------GGSRKK-----EQLTYFL 837 (837)
Q Consensus 787 ~~lt~eDf~~Al~~v~ps~~-~~~~~~~~~~~W~digG~------~~~r~~-----~~~~~~~ 837 (837)
+++|+++.+.++.++-.... ..-.+..-...|.+.||. +.+|++ +|+.|||
T Consensus 329 ~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~Va~~~~v~~~dl~s~~R~~~i~~~Rqiamyl 391 (445)
T PRK12422 329 QLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYL 391 (445)
T ss_pred CCCCHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHhCCCHHHHhcCCCCcccccHHHHHHHH
Confidence 57899999999987643221 123445555689999994 556654 8888875
No 110
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.63 E-value=6e-15 Score=157.69 Aligned_cols=183 Identities=30% Similarity=0.502 Sum_probs=129.5
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHH---HHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKES---LQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~---L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~ 581 (837)
.+.+++||+ +++|.+|++++..+ |..++.. ....+++||||||||||+||+.|+.
T Consensus 127 PLaermRPk---------tL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 127 PLAERMRPK---------TLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred ChhhhcCcc---------hHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHh
Confidence 455666666 88999999887654 3333333 3467899999999999999999998
Q ss_pred HhCCc---EEEEeccccccccccccHHHHHHHHHHHHhc-----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHh
Q 003231 582 EAGAS---FINVSMSTITSKWFGEDEKNVRALFTLAAKV-----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTH 653 (837)
Q Consensus 582 elg~~---~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~-----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ 653 (837)
-..-+ |+++++.. ..-..++.+|+.+.+. ...|||||||+++... ....|+-+
T Consensus 185 tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks------------QQD~fLP~ 245 (554)
T KOG2028|consen 185 TSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS------------QQDTFLPH 245 (554)
T ss_pred hcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh------------hhhcccce
Confidence 88555 77777644 3345678889888653 3589999999987432 22344443
Q ss_pred hccccccCCceEEEEEec--CCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc--------C-------CChhh
Q 003231 654 WDGLLTRNGERILVLAAT--NRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE--------K-------VEDLD 716 (837)
Q Consensus 654 ld~~~~~~~~~vlVIaTT--N~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~--------~-------~~d~d 716 (837)
++ ++ .|++|++| |..+.+..++++|| +++.+.....+....||.+-+... + +++..
T Consensus 246 VE-----~G-~I~lIGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~si 318 (554)
T KOG2028|consen 246 VE-----NG-DITLIGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSI 318 (554)
T ss_pred ec-----cC-ceEEEecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHH
Confidence 33 22 35666544 56689999999999 788888899999999998755411 1 13455
Q ss_pred HHHHHHHcCCCCHHHHHHH
Q 003231 717 FKELAAMTEGYSGSDLKNL 735 (837)
Q Consensus 717 l~~LA~~t~G~sg~DL~~L 735 (837)
++.|+..++|-....|..|
T Consensus 319 idyla~lsdGDaR~aLN~L 337 (554)
T KOG2028|consen 319 IDYLAYLSDGDARAALNAL 337 (554)
T ss_pred HHHHHHhcCchHHHHHHHH
Confidence 7888999988666555444
No 111
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.1e-14 Score=168.36 Aligned_cols=195 Identities=23% Similarity=0.291 Sum_probs=146.9
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...|..++||. +|+|++|++.+++.|..++... +.++++||+||||||||++|+.+|+.
T Consensus 8 y~~la~kyRP~---------~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 8 YIPFARKYRPS---------NFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred ccchhhhhCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44577788887 9999999999999998877541 45678999999999999999999999
Q ss_pred hCCc----------------------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccc
Q 003231 583 AGAS----------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSM 630 (837)
Q Consensus 583 lg~~----------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L 630 (837)
+++. ++++++.. ......++.+++.+... ...|+||||+|.|
T Consensus 67 Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L 140 (507)
T PRK06645 67 VNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML 140 (507)
T ss_pred hcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc
Confidence 8652 12222111 12345577777776543 3579999999988
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc
Q 003231 631 LGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE 710 (837)
Q Consensus 631 ~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~ 710 (837)
.. ...+.|+..++. ++..+++|.+|+.+..+.+.+++|+ .++.|..++.++...+++.++..+
T Consensus 141 s~------------~a~naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 141 SK------------GAFNALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred CH------------HHHHHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHc
Confidence 32 234555555553 3345677777778888999999999 688999999999999999999988
Q ss_pred CC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003231 711 KV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 711 ~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
+. ++..+..++..+.| +.+++.+++..++..
T Consensus 204 gi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 204 NLKTDIEALRIIAYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 76 67778889999887 677777777666443
No 112
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.61 E-value=6.1e-14 Score=170.40 Aligned_cols=165 Identities=18% Similarity=0.302 Sum_probs=120.7
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc--------
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-------- 597 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s-------- 597 (837)
++.|++++|+.|.+++........ .....++|+||||+|||++++.+|..++.+|++++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~-------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNK-------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhccc-------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 389999999999988875322211 23446999999999999999999999999999998776432
Q ss_pred -ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc-----------ccCCceE
Q 003231 598 -KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL-----------TRNGERI 665 (837)
Q Consensus 598 -~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~-----------~~~~~~v 665 (837)
.|.|...+.+.+.+..+... ..||||||||++.+.... .....|+..+|.-. ..+-.++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~-~~villDEidk~~~~~~g--------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVK-NPLFLLDEIDKMSSDMRG--------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCC-CCEEEEEChhhcccccCC--------CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 25566655555555554433 358999999999754221 12344555554210 1122568
Q ss_pred EEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh
Q 003231 666 LVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLA 708 (837)
Q Consensus 666 lVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~ 708 (837)
++|||+|.. .++++|++|| ..|.+..++.++..+|++.++-
T Consensus 467 ~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 999999987 5999999999 6889999999999999988774
No 113
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7e-15 Score=151.09 Aligned_cols=251 Identities=15% Similarity=0.206 Sum_probs=185.0
Q ss_pred HHHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHH
Q 003231 50 EQIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKAL 129 (837)
Q Consensus 50 ~~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakAL 129 (837)
.+|......-.||.+- ..++.+++++ |.....|++|...+++|++-++... -..++++|++||++.++++||||-
T Consensus 151 ~eyDsrVkaMevDekP-tE~YsDiGGl--dkQIqELvEAiVLpmth~ekF~~lg--i~pPKGvLmYGPPGTGKTlmARAc 225 (424)
T KOG0652|consen 151 SEYDSRVKAMEVDEKP-TEQYSDIGGL--DKQIQELVEAIVLPMTHKEKFENLG--IRPPKGVLMYGPPGTGKTLMARAC 225 (424)
T ss_pred hhhhhhcceeeeccCC-cccccccccH--HHHHHHHHHHhccccccHHHHHhcC--CCCCCceEeeCCCCCcHHHHHHHH
Confidence 3555555666676544 5679999999 9999999999999999998644321 257899999999999999999999
Q ss_pred hhhhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCcccccccccc
Q 003231 130 AHFFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCME 209 (837)
Q Consensus 130 A~~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (837)
|-+-.|.||-|-.-.+.-
T Consensus 226 AaqT~aTFLKLAgPQLVQ-------------------------------------------------------------- 243 (424)
T KOG0652|consen 226 AAQTNATFLKLAGPQLVQ-------------------------------------------------------------- 243 (424)
T ss_pred HHhccchHHHhcchHHHh--------------------------------------------------------------
Confidence 999999987665433310
Q ss_pred CCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc------
Q 003231 210 GSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS------ 283 (837)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~------ 283 (837)
-+.+|.-.|+.--|.++.+- .|+||||||+|.+=..+
T Consensus 244 ----------------------------------MfIGdGAkLVRDAFaLAKEk---aP~IIFIDElDAIGtKRfDSek~ 286 (424)
T KOG0652|consen 244 ----------------------------------MFIGDGAKLVRDAFALAKEK---APTIIFIDELDAIGTKRFDSEKA 286 (424)
T ss_pred ----------------------------------hhhcchHHHHHHHHHHhhcc---CCeEEEEechhhhcccccccccc
Confidence 02334555888889999886 99999999999843222
Q ss_pred --HHHHHHHHHHHHhccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHH
Q 003231 284 --QRFYNLLDKLLKKLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKV 354 (837)
Q Consensus 284 --~~~~~~lk~~l~~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~ 354 (837)
.+.-..+-.+|+.|.| .|.||.+ +|+.+-.|.||.| |+-.+|+++.|+++.|.+|+++|-.++.
T Consensus 287 GDREVQRTMLELLNQLDGFss~~~vKviAA-----TNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn-- 359 (424)
T KOG0652|consen 287 GDREVQRTMLELLNQLDGFSSDDRVKVIAA-----TNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN-- 359 (424)
T ss_pred ccHHHHHHHHHHHHhhcCCCCccceEEEee-----cccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC--
Confidence 1122223345566655 8899988 8999999999997 9999999999999999999999865443
Q ss_pred hhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 355 LQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 355 ~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
+.++.|.......++++.+..+..+|.. |--.+|.+. .-.|+.+||..|+..+|.
T Consensus 360 --v~~DvNfeELaRsTddFNGAQcKAVcVE---------------AGMiALRr~--------atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 360 --VSDDVNFEELARSTDDFNGAQCKAVCVE---------------AGMIALRRG--------ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred --CCCCCCHHHHhhcccccCchhheeeehh---------------hhHHHHhcc--------cccccHHHHHHHHHHHHH
Confidence 3344444444567777777777777755 222344333 334889999999998887
Q ss_pred hh
Q 003231 435 CK 436 (837)
Q Consensus 435 ~~ 436 (837)
.+
T Consensus 415 kK 416 (424)
T KOG0652|consen 415 KK 416 (424)
T ss_pred hh
Confidence 54
No 114
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.61 E-value=3.6e-14 Score=174.65 Aligned_cols=183 Identities=23% Similarity=0.378 Sum_probs=142.1
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.++.++|.++.++++.+.+.. +..++++|+||||||||++|+.+|..+ +.+++.+++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 688899999999999888754 345689999999999999999999987 478999999
Q ss_pred cccc--cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEe
Q 003231 593 STIT--SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAA 670 (837)
Q Consensus 593 s~l~--s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaT 670 (837)
+.+. .+|.|+.+..++.+++.+....++||||||||.+++.+...+.... .+.|...+. ...+.+|++
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~----a~lLkp~l~------rg~l~~Iga 313 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA----ANILKPALA------RGELQCIGA 313 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH----HHHhHHHHh------CCCcEEEEe
Confidence 8876 4688999999999999998888899999999999876543332222 222222221 234778888
Q ss_pred cCCC-----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh----cC--CChhhHHHHHHHcCCCCH
Q 003231 671 TNRP-----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK----EK--VEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 671 TN~~-----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~----~~--~~d~dl~~LA~~t~G~sg 729 (837)
|+.. ...++++.+|| ..|.++.|+.++...|++.+... .. +++..+..++.++.+|.+
T Consensus 314 Tt~~ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 314 TTLDEYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred CCHHHHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 8764 35789999999 56789999999999998865432 22 377778888888887664
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.7e-14 Score=167.07 Aligned_cols=192 Identities=19% Similarity=0.279 Sum_probs=143.0
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
-+..++||. +|++|+|++.+++.|..++... +.++.+||+||||+|||++|+.+|+.++
T Consensus 5 ~l~~k~rP~---------~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 5 VLARKWRPK---------SFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHhCCC---------cHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466777877 8999999999999999888652 4456789999999999999999999986
Q ss_pred Cc------------------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCC
Q 003231 585 AS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~ 636 (837)
+. ++.++.+. ......++.+.+.+... ...|+||||+|.|..
T Consensus 64 c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---- 133 (527)
T PRK14969 64 CETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---- 133 (527)
T ss_pred CCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH----
Confidence 52 22222211 11234466676666433 246999999998842
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..++. ++..+++|.+|+.+..+.+.+++|| ..+.|..++.++....+..++..+++ ++
T Consensus 134 --------~a~naLLK~LEe----pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~ 200 (527)
T PRK14969 134 --------SAFNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDA 200 (527)
T ss_pred --------HHHHHHHHHHhC----CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 234566666654 2345677777777888888899999 89999999999999999999887766 66
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
..+..++..+.| +.+++.+++..+..
T Consensus 201 ~al~~la~~s~G-slr~al~lldqai~ 226 (527)
T PRK14969 201 TALQLLARAAAG-SMRDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 777888888876 56777777765543
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.60 E-value=9.7e-15 Score=176.11 Aligned_cols=197 Identities=21% Similarity=0.315 Sum_probs=144.6
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.++.++|.+.....+.+.+.. +...++||+||||||||++|+++|... +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 577899999999998887754 234678999999999999999999875 456666666
Q ss_pred cccc--cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEe
Q 003231 593 STIT--SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAA 670 (837)
Q Consensus 593 s~l~--s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaT 670 (837)
..+. .+|.|+.+..++.++..+.+..++||||||||.+++.+...+... .+.+.|...+. ...+.+|++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~---d~~nlLkp~L~------~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV---DAANLIKPLLS------SGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH---HHHHHHHHHHh------CCCeEEEec
Confidence 6655 357888899999999999888889999999999987664322221 12222222221 235889999
Q ss_pred cCCC-----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc----CC--ChhhHHHHHHHcCC-----CCHHHHHH
Q 003231 671 TNRP-----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE----KV--EDLDFKELAAMTEG-----YSGSDLKN 734 (837)
Q Consensus 671 TN~~-----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~----~~--~d~dl~~LA~~t~G-----~sg~DL~~ 734 (837)
|+.+ ...|+++.||| ..|.++.|+.+++..||+.+.... ++ .+..+...+.++.. +-+.....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 9875 36799999999 589999999999999999776542 22 55566665555443 34556777
Q ss_pred HHHHHHHH
Q 003231 735 LCVTAAYR 742 (837)
Q Consensus 735 L~~~Aa~~ 742 (837)
++.+|+..
T Consensus 401 lldea~a~ 408 (758)
T PRK11034 401 VIDEAGAR 408 (758)
T ss_pred HHHHHHHh
Confidence 77777653
No 117
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.7e-14 Score=168.17 Aligned_cols=193 Identities=19% Similarity=0.278 Sum_probs=144.1
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.-|..++||. +|++|+|++.+++.|..++... +.++.+||+||+|||||++|+.+|+.+
T Consensus 4 ~vla~KyRP~---------~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 4 LVLARKYRPR---------SFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHHHHHHCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788887 9999999999999999988652 345678999999999999999999998
Q ss_pred CCc-----------------------------EEEEeccccccccccccHHHHHHHHHHHHhcC----CeEEEecccccc
Q 003231 584 GAS-----------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAKVS----PTIIFVDEVDSM 630 (837)
Q Consensus 584 g~~-----------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~----psVLfIDEID~L 630 (837)
++. ++.++... ......++.+.+.+...+ ..|+||||+|.|
T Consensus 63 nC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L 136 (618)
T PRK14951 63 NCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML 136 (618)
T ss_pred cCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC
Confidence 651 22232221 112334666666554322 469999999998
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc
Q 003231 631 LGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE 710 (837)
Q Consensus 631 ~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~ 710 (837)
.. ...|.|+..++. ....+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++.++
T Consensus 137 s~------------~a~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~e 199 (618)
T PRK14951 137 TN------------TAFNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAE 199 (618)
T ss_pred CH------------HHHHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHc
Confidence 43 234566665554 3345677777778888888999999 889999999999999999999887
Q ss_pred CC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 711 KV--EDLDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 711 ~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
++ ++..+..|+..+.| +.+++.+++..+..
T Consensus 200 gi~ie~~AL~~La~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 200 NVPAEPQALRLLARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 76 67778899998886 67777777755443
No 118
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.2e-14 Score=165.81 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=141.7
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|..++||. +|++++|++.+++.+..++... +.++++||+||+|+|||++|+++|+.+
T Consensus 4 ~~~~~KyRP~---------~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 4 ITFYRKYRPH---------NFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred hhHHHHhCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4688899988 8999999999999999887541 445789999999999999999999988
Q ss_pred CC------------------------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCC
Q 003231 584 GA------------------------SFINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~------------------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~ 635 (837)
.+ .++.++++. ...-..++.+...+... ...|++|||+|.|..
T Consensus 63 ~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--- 133 (605)
T PRK05896 63 NCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--- 133 (605)
T ss_pred cCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---
Confidence 43 223333221 01233466666655443 346999999998832
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.|+..++. ++..+++|++|+.+..+.+.+++|| ..+.|..|+.++...+++..+...+. +
T Consensus 134 ---------~A~NaLLKtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is 199 (605)
T PRK05896 134 ---------SAWNALLKTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIE 199 (605)
T ss_pred ---------HHHHHHHHHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 233566666554 2345677777788899999999999 68999999999999999999888764 7
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
+..+..++.++.| +.+++.+++..
T Consensus 200 ~eal~~La~lS~G-dlR~AlnlLek 223 (605)
T PRK05896 200 DNAIDKIADLADG-SLRDGLSILDQ 223 (605)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 7778889998886 55566666555
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.59 E-value=8.7e-15 Score=179.99 Aligned_cols=180 Identities=24% Similarity=0.373 Sum_probs=134.8
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.+++++|++..+.++.+.+.. +...+++|+||||||||++|+++|..+ +.+++.+++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 788899999987777776644 334679999999999999999999988 788999998
Q ss_pred cccc--cccccccHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEE
Q 003231 593 STIT--SKWFGEDEKNVRALFTLAAK-VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669 (837)
Q Consensus 593 s~l~--s~~~G~~e~~l~~lf~~A~~-~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIa 669 (837)
+.+. .+|.|+.+..++.+|..+.. ..++||||||+|.+.+.+...+..+.. +.|...+ ....+.+|+
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~----~~lkp~l------~~g~l~~Ig 312 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG----NMLKPAL------ARGELHCVG 312 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH----HHhcchh------hcCCCeEEE
Confidence 8876 45788999999999988654 468999999999998765443333322 2222221 123588888
Q ss_pred ecCCCC-----CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc----CC--ChhhHHHHHHHcCC
Q 003231 670 ATNRPF-----DLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE----KV--EDLDFKELAAMTEG 726 (837)
Q Consensus 670 TTN~~~-----~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~----~~--~d~dl~~LA~~t~G 726 (837)
+|+... .+|+++.|||+ .|.++.|+.+++..|++.+.... ++ .+..+...+.++.+
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r 379 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc
Confidence 887754 58999999995 68899999999999998876542 22 45555555455444
No 120
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.5e-14 Score=165.27 Aligned_cols=192 Identities=20% Similarity=0.274 Sum_probs=140.8
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..+..++||. +|++|+|++.+++.|..++... +.++.+||+||+|+|||++|+.+|+.+
T Consensus 4 ~~La~KyRP~---------~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 4 QALARKYRPQ---------SFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred hhHHHHHCcC---------cHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567788887 8999999999999999888652 345679999999999999999999988
Q ss_pred CC------------------------cEEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCC
Q 003231 584 GA------------------------SFINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~------------------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~ 635 (837)
.+ .+++++...- .....++.+.+.+.. ....|+||||+|.|..
T Consensus 63 ~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~--- 133 (546)
T PRK14957 63 NCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK--- 133 (546)
T ss_pred CCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---
Confidence 54 2333332110 112234555554442 2357999999998832
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.|+..++.. +..+.+|++|+.+..+.+.+++|+ ..+.|..++.++....++..+.++++ +
T Consensus 134 ---------~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e 199 (546)
T PRK14957 134 ---------QSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSD 199 (546)
T ss_pred ---------HHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 3445666666542 344666666677888888899999 89999999999999999999888776 6
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
+..+..++..+.| +.+++.+++..++
T Consensus 200 ~~Al~~Ia~~s~G-dlR~alnlLek~i 225 (546)
T PRK14957 200 EQSLEYIAYHAKG-SLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7778888988875 6667777766544
No 121
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=2.7e-14 Score=161.04 Aligned_cols=186 Identities=19% Similarity=0.254 Sum_probs=130.7
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS---------------- 586 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~---------------- 586 (837)
.|++|+|++.+++.|+.++..+...+. ..+.+.++++||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999999999986433222 2222457789999999999999999999987543
Q ss_pred -------EEEEeccccccccccccHHHHHHHHHHHHhcC----CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhc
Q 003231 587 -------FINVSMSTITSKWFGEDEKNVRALFTLAAKVS----PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWD 655 (837)
Q Consensus 587 -------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~----psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld 655 (837)
+..+.+.. . .-....++.+++.+...+ ..|+||||+|.|.. ...+.|+..++
T Consensus 80 ~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------------~aanaLLk~LE 142 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE------------RAANALLKAVE 142 (394)
T ss_pred hcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH------------HHHHHHHHHhh
Confidence 11121111 0 112344777887776533 46999999999843 23356666665
Q ss_pred cccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHHHHHH
Q 003231 656 GLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSDLKNL 735 (837)
Q Consensus 656 ~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~DL~~L 735 (837)
.. +.++++|.+|+.++.+.|.+++|| ..+.|+.|+.++...++.. ..++++.....++..+.|..+..+.-+
T Consensus 143 ep----~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 143 EP----PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred cC----CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 42 233455555555899999999999 7899999999988777753 234566677788999999887666544
Q ss_pred H
Q 003231 736 C 736 (837)
Q Consensus 736 ~ 736 (837)
.
T Consensus 215 ~ 215 (394)
T PRK07940 215 T 215 (394)
T ss_pred c
Confidence 3
No 122
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.58 E-value=2.7e-14 Score=161.06 Aligned_cols=231 Identities=20% Similarity=0.283 Sum_probs=148.4
Q ss_pred CCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCC-----CCCCCceEEEEcCCCChHHHHH
Q 003231 502 PDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGG-----LLKPCRGILLFGPPGTGKTMLA 576 (837)
Q Consensus 502 ~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~-----~~~p~~~iLL~GPpGtGKT~LA 576 (837)
...++...+... |+|++++++.+..++....++-...... ......++||+||||||||++|
T Consensus 67 ~p~~i~~~L~~~-------------ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 67 TPKEIKAHLDEY-------------VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLA 133 (413)
T ss_pred CHHHHHHHhcce-------------ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHH
Confidence 345666666655 8999999999988774322221110000 0112468999999999999999
Q ss_pred HHHHHHhCCcEEEEecccccc-cccccc-HHHHHHHHHHH----HhcCCeEEEecccccccCCCCCcchH-H-HHHHHHH
Q 003231 577 KAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLA----AKVSPTIIFVDEVDSMLGQRTRVGEH-E-AMRKIKN 648 (837)
Q Consensus 577 ralA~elg~~~i~v~~s~l~s-~~~G~~-e~~l~~lf~~A----~~~~psVLfIDEID~L~~~r~~~~~~-~-~~~~i~~ 648 (837)
+++|..++.+|..++++.+.. .|+|.. +..+..++..+ ....++||||||||++.+.+.+.... . ....+.+
T Consensus 134 raLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 134 QTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred HHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 999999999999999988753 577875 34444444322 23467899999999998754332111 1 1124677
Q ss_pred HHHHhhcccccc---------CCceEEEEEecCCCC--------------------------------------------
Q 003231 649 EFMTHWDGLLTR---------NGERILVLAATNRPF-------------------------------------------- 675 (837)
Q Consensus 649 ~Ll~~ld~~~~~---------~~~~vlVIaTTN~~~-------------------------------------------- 675 (837)
.|++.|++.... +..+.++|.|+|-.+
T Consensus 214 ~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 293 (413)
T TIGR00382 214 ALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEP 293 (413)
T ss_pred HHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHH
Confidence 788888765321 123567888887610
Q ss_pred ------CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHH----Hhh-------cCC----ChhhHHHHHHHc--CCCCHHHH
Q 003231 676 ------DLDEAIIRRFERRIMVGLPSAENREMILKTL----LAK-------EKV----EDLDFKELAAMT--EGYSGSDL 732 (837)
Q Consensus 676 ------~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~----l~~-------~~~----~d~dl~~LA~~t--~G~sg~DL 732 (837)
.+.|+|+.|++.++.|...+.+++.+|+... +++ .++ ++..++.|++.. ..+-.+.|
T Consensus 294 ~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~L 373 (413)
T TIGR00382 294 EDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGL 373 (413)
T ss_pred HHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHH
Confidence 1447777888888899999999999998652 221 122 455566677652 24445556
Q ss_pred HHHHHHHHHHHHH
Q 003231 733 KNLCVTAAYRPVR 745 (837)
Q Consensus 733 ~~L~~~Aa~~av~ 745 (837)
+.+++.....++-
T Consensus 374 r~iie~~l~~~m~ 386 (413)
T TIGR00382 374 RSIVEGLLLDVMF 386 (413)
T ss_pred HHHHHHhhHHHHh
Confidence 5555544444433
No 123
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=7.5e-14 Score=164.44 Aligned_cols=190 Identities=24% Similarity=0.341 Sum_probs=141.9
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+-.++||. +|++|+|++.+++.|...+... +.++.+||+||+|||||++|+.+|+.+.
T Consensus 5 al~~k~rP~---------~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 5 ALYRKWRPQ---------TFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHHHHhCCC---------cHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355677777 9999999999999999988652 4567799999999999999999999885
Q ss_pred C------------------------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCC
Q 003231 585 A------------------------SFINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~------------------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~ 636 (837)
+ .++.++++. +.....++.+.+.+... ...|+||||+|.|..
T Consensus 64 c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---- 133 (559)
T PRK05563 64 CLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---- 133 (559)
T ss_pred CCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----
Confidence 3 234444321 12344566776665532 357999999998832
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..++. ++..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++.++.+.++ ++
T Consensus 134 --------~a~naLLKtLEe----pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~ 200 (559)
T PRK05563 134 --------GAFNALLKTLEE----PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYED 200 (559)
T ss_pred --------HHHHHHHHHhcC----CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 234566665554 2345666766777899999999999 67899999999999999999988775 67
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
..+..++..+.| +.+++.+++..+
T Consensus 201 ~al~~ia~~s~G-~~R~al~~Ldq~ 224 (559)
T PRK05563 201 EALRLIARAAEG-GMRDALSILDQA 224 (559)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 778888888876 566666665544
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.7e-14 Score=172.27 Aligned_cols=188 Identities=22% Similarity=0.215 Sum_probs=136.8
Q ss_pred HHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA 585 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~ 585 (837)
|..+||+. +|++|+|++.+++.|+.++... +..+.+||+||+|||||++|+.||+.+.+
T Consensus 5 l~~KyRP~---------~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 5 LYRRYRPA---------TFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHHHhCCC---------CHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 56788887 9999999999999999988641 34566999999999999999999999964
Q ss_pred c--------------------------EEEEeccccccccccccHHHHHHHHHHH----HhcCCeEEEecccccccCCCC
Q 003231 586 S--------------------------FINVSMSTITSKWFGEDEKNVRALFTLA----AKVSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 586 ~--------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A----~~~~psVLfIDEID~L~~~r~ 635 (837)
. |++++.... .....++.+.+.+ ......|+||||+|.|..
T Consensus 64 ~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--- 134 (824)
T PRK07764 64 VEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP--- 134 (824)
T ss_pred ccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---
Confidence 2 222322110 1123344443333 234567999999999842
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...|.|+..|+.. ...+++|++|+.++.|.+.|++|+ .++.|..++.++...+|+.++.++++ +
T Consensus 135 ---------~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id 200 (824)
T PRK07764 135 ---------QGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVE 200 (824)
T ss_pred ---------HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCC
Confidence 3445666666653 345677777788888999999999 78899999999999999999988776 6
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
+..+..|+..+.| +.+++.+++..
T Consensus 201 ~eal~lLa~~sgG-dlR~Al~eLEK 224 (824)
T PRK07764 201 PGVLPLVIRAGGG-SVRDSLSVLDQ 224 (824)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 6667778877776 55555555443
No 125
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.57 E-value=2e-14 Score=177.42 Aligned_cols=183 Identities=21% Similarity=0.372 Sum_probs=139.1
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.++.++|+++.+..+.+.+.. +...+++|+||||||||++|+.+|..+ +.+++.+++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 788899999988777776644 345678999999999999999999986 678888988
Q ss_pred cccc--cccccccHHHHHHHHHHHHhc-CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEE
Q 003231 593 STIT--SKWFGEDEKNVRALFTLAAKV-SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669 (837)
Q Consensus 593 s~l~--s~~~G~~e~~l~~lf~~A~~~-~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIa 669 (837)
+.+. .+|.|+.+..++.+|..+... .+.||||||||.|++.+...+..+ ..+.|...+ ....+.+|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l------~~g~i~~Ig 307 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL------ARGELHCIG 307 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh------hcCceEEEE
Confidence 8775 468888899999999988664 589999999999986543322222 222222221 123588888
Q ss_pred ecCCC-----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcC------CChhhHHHHHHHcCCCCH
Q 003231 670 ATNRP-----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEK------VEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 670 TTN~~-----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~------~~d~dl~~LA~~t~G~sg 729 (837)
+|+.. ..+|+++.||| ..|.++.|+.+++..|++.+..... +.+..+..++.++.+|..
T Consensus 308 aTt~~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 88765 46899999999 4689999999999999998765532 256677788888776653
No 126
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.1e-14 Score=164.64 Aligned_cols=188 Identities=20% Similarity=0.243 Sum_probs=135.8
Q ss_pred HHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA 585 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~ 585 (837)
|..++||. +|++|+|++.+++.|+.++... +.++.+||+||+|||||++|+++|+.+++
T Consensus 3 l~~kyRP~---------~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 3 LYRKYRPA---------TFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHHHhCCC---------cHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44677877 8999999999999999988652 34556899999999999999999998864
Q ss_pred c--------------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCC
Q 003231 586 S--------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 586 ~--------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~ 635 (837)
. +++++++.. ..-..++.+.+.+.. ....|+||||+|.|..
T Consensus 62 ~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--- 132 (584)
T PRK14952 62 AQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--- 132 (584)
T ss_pred ccCCCCCcccccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---
Confidence 2 222322211 123334555444432 2457999999998842
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.|+..|+. ....+++|.+|+.+..+.+.+++|+ .++.|..++.++....+..++.++++ +
T Consensus 133 ---------~A~NALLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~ 198 (584)
T PRK14952 133 ---------AGFNALLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVD 198 (584)
T ss_pred ---------HHHHHHHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCC
Confidence 245666666654 3345777777788889999999998 78999999999999999999988775 6
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
+..+..++..+.| +.+++.+++..
T Consensus 199 ~~al~~Ia~~s~G-dlR~aln~Ldq 222 (584)
T PRK14952 199 DAVYPLVIRAGGG-SPRDTLSVLDQ 222 (584)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 6677777777765 44444444443
No 127
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=5.5e-14 Score=161.39 Aligned_cols=166 Identities=16% Similarity=0.322 Sum_probs=111.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccH-HHHHHHHHHHHhcCCeEEEecccccccC
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTITSKWFGEDE-KNVRALFTLAAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l~s~~~G~~e-~~l~~lf~~A~~~~psVLfIDEID~L~~ 632 (837)
..+++||||||+|||+|++++|+++ +..++++++.++...+..... ..+. -|.......+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcC
Confidence 3569999999999999999999986 467888998887655432211 1122 23333334678999999998865
Q ss_pred CCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC---CcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHH
Q 003231 633 QRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD---LDEAIIRRFE--RRIMVGLPSAENREMILKTLL 707 (837)
Q Consensus 633 ~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~---Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l 707 (837)
... ...+|...++.+... ...+||++...|.. +.+.+++||. ..+.+..|+.+.|..|++..+
T Consensus 209 ~~~----------~q~elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 209 KTG----------VQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred cHH----------HHHHHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 321 112232333332222 22455555556654 5578888994 356789999999999999998
Q ss_pred hhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 708 AKEKV--EDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 708 ~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
...++ ++..++.||..+.| +.++|..++..
T Consensus 277 ~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~ 308 (440)
T PRK14088 277 EIEHGELPEEVLNFVAENVDD-NLRRLRGAIIK 308 (440)
T ss_pred HhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHH
Confidence 86554 78889999998875 55666665543
No 128
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.7e-14 Score=163.79 Aligned_cols=189 Identities=22% Similarity=0.295 Sum_probs=137.9
Q ss_pred HHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA 585 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~ 585 (837)
+..++||. +|+||+|++.+++.|..++... +.++.+||+||||||||++|+++|+.+.+
T Consensus 4 l~~KyRP~---------~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 4 LYQRARPI---------TFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HHHhhCCC---------CHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 44677777 8999999999999999988651 34566799999999999999999998853
Q ss_pred c-----------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCcc
Q 003231 586 S-----------------------FINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRTRVG 638 (837)
Q Consensus 586 ~-----------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~~~~ 638 (837)
. ++.++.+. ......++.+.+.+.. ..+.||||||+|.+..
T Consensus 63 ~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~------ 130 (504)
T PRK14963 63 SGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK------ 130 (504)
T ss_pred cCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH------
Confidence 1 34444321 1123345555444433 2457999999997631
Q ss_pred hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Chhh
Q 003231 639 EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLD 716 (837)
Q Consensus 639 ~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~d 716 (837)
...+.|+..++. +...+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++....++.++.+.++ ++..
T Consensus 131 ------~a~naLLk~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~A 199 (504)
T PRK14963 131 ------SAFNALLKTLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEA 199 (504)
T ss_pred ------HHHHHHHHHHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 334556655554 2345677777888899999999999 68899999999999999999988776 6777
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Q 003231 717 FKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 717 l~~LA~~t~G~sg~DL~~L~~~A 739 (837)
+..++..+.| +.+++.+++..+
T Consensus 200 l~~ia~~s~G-dlR~aln~Lekl 221 (504)
T PRK14963 200 LQLVARLADG-AMRDAESLLERL 221 (504)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHH
Confidence 8888888876 445555555543
No 129
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=1.4e-13 Score=160.64 Aligned_cols=164 Identities=22% Similarity=0.351 Sum_probs=112.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCC
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r 634 (837)
+.++|||++|+|||+|++++|+++ +..++++++.++...+...........|..... .+.+|+||||+.+.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999987 578899999888766543322222223443333 46899999999886532
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC----CCCcHHHHHHHHH--hhhcCCCCHHHHHHHHHHHHh
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP----FDLDEAIIRRFER--RIMVGLPSAENREMILKTLLA 708 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~----~~Ld~aL~rRF~~--~I~~~~P~~eer~~IL~~~l~ 708 (837)
. .. .+|...++.+... + +.+| .|+|.+ ..+++.|++||.. ++.+..|+.+.|..||+..+.
T Consensus 394 ~---tq-------eeLF~l~N~l~e~-g-k~II-ITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S---TQ-------EEFFHTFNTLHNA-N-KQIV-LSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H---HH-------HHHHHHHHHHHhc-C-CCEE-EecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 11 2222223322221 2 2233 455543 3578899999954 458889999999999999998
Q ss_pred hcCC--ChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 709 KEKV--EDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 709 ~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
..++ ++..++.|+.+..+ +.+.|..++..
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~r 491 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIR 491 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 8776 78888999998874 55666665543
No 130
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.56 E-value=8.5e-14 Score=167.29 Aligned_cols=188 Identities=28% Similarity=0.398 Sum_probs=133.1
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHH---HHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKE---SLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~---~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~ 581 (837)
.|..++||. +|++++|++.++. .+..++.. ....+++|+||||||||++|+++|+
T Consensus 17 PLaek~RP~---------tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 17 PLADRLRPR---------TLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ChHHhcCCC---------cHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHH
Confidence 577788877 8999999999885 45555533 2346899999999999999999999
Q ss_pred HhCCcEEEEeccccccccccccHHHHHHHHHHHH-----hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcc
Q 003231 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAA-----KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDG 656 (837)
Q Consensus 582 elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~-----~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~ 656 (837)
..+.+|+.+++.... ...++..+..+. .....+|||||||.+.. ...+.|+..++.
T Consensus 75 ~~~~~f~~lna~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------~qQdaLL~~lE~ 135 (725)
T PRK13341 75 HTRAHFSSLNAVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------AQQDALLPWVEN 135 (725)
T ss_pred HhcCcceeehhhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------HHHHHHHHHhcC
Confidence 999999988875321 122333333331 12457999999998742 112334433332
Q ss_pred ccccCCceEEEEEec--CCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh-------hcC--CChhhHHHHHHHcC
Q 003231 657 LLTRNGERILVLAAT--NRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLA-------KEK--VEDLDFKELAAMTE 725 (837)
Q Consensus 657 ~~~~~~~~vlVIaTT--N~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~-------~~~--~~d~dl~~LA~~t~ 725 (837)
..+++|++| |....+++++++|+ ..+.|+.++.+++..|++..+. ... +++..++.|+..+.
T Consensus 136 ------g~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~ 208 (725)
T PRK13341 136 ------GTITLIGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN 208 (725)
T ss_pred ------ceEEEEEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC
Confidence 235666544 33467889999997 6789999999999999999887 222 36778888998886
Q ss_pred CCCHHHHHHHHHHHHH
Q 003231 726 GYSGSDLKNLCVTAAY 741 (837)
Q Consensus 726 G~sg~DL~~L~~~Aa~ 741 (837)
| ..+.+.+++..|+.
T Consensus 209 G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 209 G-DARSLLNALELAVE 223 (725)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 5 56777777776653
No 131
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.6e-14 Score=162.63 Aligned_cols=189 Identities=19% Similarity=0.274 Sum_probs=137.8
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|..++||. +|++|+|++.+++.|..++... +-+.++||+||||||||++|+.+|+.+
T Consensus 4 ~~la~KyRP~---------sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 4 ASLTARYRPQ---------TFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred chHHHHhCCC---------CHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 3577888888 9999999999999999988651 335689999999999999999999999
Q ss_pred CCc------------------------EEEEeccccccccccccHHHHHHHHHHHH----hcCCeEEEecccccccCCCC
Q 003231 584 GAS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAA----KVSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~----~~~psVLfIDEID~L~~~r~ 635 (837)
.+. +++++...- ..-..++.+.+.+. .....||||||+|.|..
T Consensus 63 ~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~--- 133 (624)
T PRK14959 63 NCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR--- 133 (624)
T ss_pred cccCCCCCCCCcccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---
Confidence 653 333433210 11223344333332 23457999999998842
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.|+..++.. ..++++|++|+.+..+.+.+++|+ ..+.|+.++.++...+|+.++..+++ +
T Consensus 134 ---------~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id 199 (624)
T PRK14959 134 ---------EAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYD 199 (624)
T ss_pred ---------HHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 3346666666542 245777888888888889999999 68899999999999999998887764 7
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
+..+..|+..+.|- .+++.+++.
T Consensus 200 ~eal~lIA~~s~Gd-lR~Al~lLe 222 (624)
T PRK14959 200 PAAVRLIARRAAGS-VRDSMSLLG 222 (624)
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHH
Confidence 78888899988864 344444443
No 132
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.3e-13 Score=163.12 Aligned_cols=188 Identities=19% Similarity=0.269 Sum_probs=139.6
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
-+..++||. +|++|+|++++++.|..++... +.++.+||+||+|+|||++|+.+|+.+.
T Consensus 5 ~l~~k~RP~---------~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 5 VLARKYRPQ---------TFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHHHhCCC---------CHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 456677877 8999999999999999988652 4566789999999999999999999985
Q ss_pred Cc------------------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCC
Q 003231 585 AS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~ 636 (837)
+. ++++++.. ......++.+.+.+... ...|+||||+|.|..
T Consensus 64 c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---- 133 (576)
T PRK14965 64 CEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---- 133 (576)
T ss_pred CCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH----
Confidence 42 33333221 11233466666655432 346999999998842
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..|+. +...+++|.+|+.++.+.+.+++|+ ..+.|..++.++....+..++.++++ ++
T Consensus 134 --------~a~naLLk~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~ 200 (576)
T PRK14965 134 --------NAFNALLKTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISD 200 (576)
T ss_pred --------HHHHHHHHHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCH
Confidence 234566666654 3345777778888899999999999 78999999999999999999988775 67
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
..+..++..+.| +.+++.+++.
T Consensus 201 ~al~~la~~a~G-~lr~al~~Ld 222 (576)
T PRK14965 201 AALALVARKGDG-SMRDSLSTLD 222 (576)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHH
Confidence 888888888886 4445444443
No 133
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.56 E-value=7.2e-14 Score=154.74 Aligned_cols=193 Identities=20% Similarity=0.272 Sum_probs=132.2
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
-|.++++|. +|++++|++++++.+..++.. ....++||+||||||||++|+++|+++.
T Consensus 4 ~w~~ky~P~---------~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 4 LWTEKYRPA---------LLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred chHHhhCCC---------cHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 477888887 899999999999999988754 1224799999999999999999999883
Q ss_pred -----CcEEEEecccccccc-------------ccc-------cHHHHHHHHHHHHh-----cCCeEEEecccccccCCC
Q 003231 585 -----ASFINVSMSTITSKW-------------FGE-------DEKNVRALFTLAAK-----VSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 585 -----~~~i~v~~s~l~s~~-------------~G~-------~e~~l~~lf~~A~~-----~~psVLfIDEID~L~~~r 634 (837)
.+++.++++++.... .+. ....++.+...... ..+.+|||||+|.+..
T Consensus 62 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-- 139 (337)
T PRK12402 62 GDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-- 139 (337)
T ss_pred CcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--
Confidence 357888887653221 010 01223333322222 2346999999998732
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV-- 712 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~-- 712 (837)
...+.|...++.. .....+|.+++.+..+.+.+++|+ ..+.+..|+.+++..+++.++...++
T Consensus 140 ----------~~~~~L~~~le~~----~~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (337)
T PRK12402 140 ----------DAQQALRRIMEQY----SRTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDY 204 (337)
T ss_pred ----------HHHHHHHHHHHhc----cCCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 1123333334332 112345555666667778898998 67899999999999999999888775
Q ss_pred ChhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 713 EDLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 713 ~d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
++..++.|+..+.| +.+.+.+.+.
T Consensus 205 ~~~al~~l~~~~~g-dlr~l~~~l~ 228 (337)
T PRK12402 205 DDDGLELIAYYAGG-DLRKAILTLQ 228 (337)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 78888889988854 4444444443
No 134
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.56 E-value=5.3e-14 Score=154.85 Aligned_cols=184 Identities=21% Similarity=0.269 Sum_probs=125.9
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...|.+++||. +|++++|++++++.+..++... +.++.+||+||||+|||++|+++|++
T Consensus 8 ~~~w~~kyrP~---------~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 8 EFMWEQKYRPS---------TIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred CCcceeccCCC---------cHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 44577788877 8999999999999999888631 34456777999999999999999999
Q ss_pred hCCcEEEEeccccccccccccHHHHHHHHHHHH-hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccC
Q 003231 583 AGASFINVSMSTITSKWFGEDEKNVRALFTLAA-KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRN 661 (837)
Q Consensus 583 lg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~-~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 661 (837)
++.+++.+++++ .. .......+........ ...+.||||||+|.+... .....+...++..
T Consensus 67 ~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~~L~~~le~~---- 128 (316)
T PHA02544 67 VGAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQRHLRSFMEAY---- 128 (316)
T ss_pred hCccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHHHHHHHHHHhc----
Confidence 999999999876 21 1111111222111111 124689999999987221 1112222333332
Q ss_pred CceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh-------hcCC--ChhhHHHHHHHcCC
Q 003231 662 GERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLA-------KEKV--EDLDFKELAAMTEG 726 (837)
Q Consensus 662 ~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~-------~~~~--~d~dl~~LA~~t~G 726 (837)
..++.+|+|||.+..+.+++++|| ..+.|+.|+.+++..+++.++. ..+. ++..+..++....|
T Consensus 129 ~~~~~~Ilt~n~~~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 129 SKNCSFIITANNKNGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred CCCceEEEEcCChhhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 234678889999999999999999 6789999999999877665433 2232 44556667765554
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=9.6e-14 Score=164.77 Aligned_cols=197 Identities=23% Similarity=0.313 Sum_probs=142.7
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|..++||. +|++|+|++.+++.|+..+... +.++.+||+||+|+|||++|+++|+.+
T Consensus 6 ~~l~~KyRP~---------~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 6 KALYRKYRPK---------TFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred hhHHHHhCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4577888887 8999999999999999988652 356778999999999999999999988
Q ss_pred CCcEEEE---ecccc---cc---cc---cc---ccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHH
Q 003231 584 GASFINV---SMSTI---TS---KW---FG---EDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMR 644 (837)
Q Consensus 584 g~~~i~v---~~s~l---~s---~~---~G---~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~ 644 (837)
.+.-... .|..- .+ .+ -+ .....++.+.+.+... ...|++|||+|.|..
T Consensus 65 nC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------ 132 (725)
T PRK07133 65 NCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------ 132 (725)
T ss_pred cccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------
Confidence 6531100 00000 00 00 00 1234467777766543 357999999998842
Q ss_pred HHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHH
Q 003231 645 KIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAA 722 (837)
Q Consensus 645 ~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~ 722 (837)
...+.|+..++. ++..+++|.+|+.++.+.+.+++|| .++.|..++.++...+++..+.+.++ ++..+..+|.
T Consensus 133 ~A~NALLKtLEE----PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~ 207 (725)
T PRK07133 133 SAFNALLKTLEE----PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAK 207 (725)
T ss_pred HHHHHHHHHhhc----CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 245566666654 3345677777788899999999999 68999999999999999998888776 5666888898
Q ss_pred HcCCCCHHHHHHHHHHH
Q 003231 723 MTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 723 ~t~G~sg~DL~~L~~~A 739 (837)
.+.| +.+++..++..+
T Consensus 208 lS~G-slR~AlslLekl 223 (725)
T PRK07133 208 LSSG-SLRDALSIAEQV 223 (725)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 8886 556666655544
No 136
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=1.7e-13 Score=157.59 Aligned_cols=168 Identities=16% Similarity=0.271 Sum_probs=112.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHH---HHHHHHHHHHhcCCeEEEecccccc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTITSKWFGEDEK---NVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l~s~~~G~~e~---~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
.++++|+||+|+|||+|++++++++ +..++++++.++...+...... .+..+... . ....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~-~-~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE-I-CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH-h-ccCCEEEEeccccc
Confidence 4579999999999999999999865 5788899998877654432211 12111111 1 24679999999988
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC-CC---CCcHHHHHHHH--HhhhcCCCCHHHHHHHHH
Q 003231 631 LGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR-PF---DLDEAIIRRFE--RRIMVGLPSAENREMILK 704 (837)
Q Consensus 631 ~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~-~~---~Ld~aL~rRF~--~~I~~~~P~~eer~~IL~ 704 (837)
.+.. ....+|...++...... + .+|.|+|. |. .+++.+++||. ..+.+..|+.++|..|++
T Consensus 219 ~~k~----------~~~e~lf~l~N~~~~~~--k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 219 SYKE----------KTNEIFFTIFNNFIEND--K-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCH----------HHHHHHHHHHHHHHHcC--C-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 5421 11222333333222222 2 34445544 43 45789999994 456788999999999999
Q ss_pred HHHhhcC----CChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003231 705 TLLAKEK----VEDLDFKELAAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 705 ~~l~~~~----~~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
..+...+ +++..+..|+..+.| +.+.|..+|......
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 9988754 477888899999886 677888777665533
No 137
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.55 E-value=6.1e-14 Score=156.32 Aligned_cols=177 Identities=28% Similarity=0.395 Sum_probs=129.7
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcC-CCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-cc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFG-ED 603 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~-~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s-~~~G-~~ 603 (837)
|+|++++++.+..++....++..+... ..-.+++++||+||||||||++|+++|..++.+|+.+++..+.. .|+| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 899999999999888764333322111 11134689999999999999999999999999999999998864 6777 34
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 003231 604 EKNVRALFTLA--------------------------------------------------------------------- 614 (837)
Q Consensus 604 e~~l~~lf~~A--------------------------------------------------------------------- 614 (837)
+..++.+|..|
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 55555555554
Q ss_pred ----------------------------------------------------------------------HhcCCeEEEe
Q 003231 615 ----------------------------------------------------------------------AKVSPTIIFV 624 (837)
Q Consensus 615 ----------------------------------------------------------------------~~~~psVLfI 624 (837)
+....+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0124579999
Q ss_pred cccccccCCCCCcchHHHHHHHHHHHHHhhcccccc------CCceEEEEEecC----CCCCCcHHHHHHHHHhhhcCCC
Q 003231 625 DEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR------NGERILVLAATN----RPFDLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 625 DEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~------~~~~vlVIaTTN----~~~~Ld~aL~rRF~~~I~~~~P 694 (837)
||||+++.+..+.+..-...-+.+.|+..++|.... +..++++||+.. .|.+|-|+|.-||+.++.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999865432221112234677788887774322 224688887653 5778899999999999999999
Q ss_pred CHHHHHHHH
Q 003231 695 SAENREMIL 703 (837)
Q Consensus 695 ~~eer~~IL 703 (837)
+.++...||
T Consensus 334 ~~edL~rIL 342 (441)
T TIGR00390 334 TTDDFERIL 342 (441)
T ss_pred CHHHHHHHh
Confidence 999999998
No 138
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.55 E-value=1.5e-13 Score=153.40 Aligned_cols=192 Identities=22% Similarity=0.341 Sum_probs=141.2
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.|.++++|. +|++++|++.+++.+.+.+... +.++.+||+||||+|||++|+++|+.+.
T Consensus 3 ~~~~~~rp~---------~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 3 VLARKYRPQ---------TFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cHHHHhCCC---------cHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467778877 8999999999999999888642 3456799999999999999999999874
Q ss_pred Cc------------------------EEEEeccccccccccccHHHHHHHHHHHHhcC----CeEEEecccccccCCCCC
Q 003231 585 AS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAKVS----PTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~----psVLfIDEID~L~~~r~~ 636 (837)
.. ++.++... ......++.++..+...+ ..||+|||+|.+..
T Consensus 62 ~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---- 131 (355)
T TIGR02397 62 CQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---- 131 (355)
T ss_pred CCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH----
Confidence 32 33333321 112334666777665432 46999999998732
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.++..++. ++..+++|++|+.+..+.+.+++|+ ..+.|+.|+.++...+++.++...+. ++
T Consensus 132 --------~~~~~Ll~~le~----~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~ 198 (355)
T TIGR02397 132 --------SAFNALLKTLEE----PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIED 198 (355)
T ss_pred --------HHHHHHHHHHhC----CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 234556665544 2345677777788888889999999 67899999999999999999988765 67
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
..+..++..+.| +.+.+.+.+..++.
T Consensus 199 ~a~~~l~~~~~g-~~~~a~~~lekl~~ 224 (355)
T TIGR02397 199 EALELIARAADG-SLRDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHh
Confidence 778888888876 56666666655443
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.8e-13 Score=158.67 Aligned_cols=193 Identities=21% Similarity=0.245 Sum_probs=142.8
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.|..++||. +|++|+|++.+++.|...+... +.++.+||+||+|+|||++|+++|+.+.
T Consensus 3 ~l~~KyRP~---------~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 3 ALALKYRPK---------HFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred cHHHHHCCC---------CHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 366788887 9999999999999999988652 3456789999999999999999999873
Q ss_pred C------------------------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCC
Q 003231 585 A------------------------SFINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~------------------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~ 636 (837)
+ .++.++.+.- ..-..++.+....... ...|++|||+|.|..
T Consensus 62 c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---- 131 (535)
T PRK08451 62 CEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---- 131 (535)
T ss_pred CCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----
Confidence 2 1233322110 1124455555543322 246999999998842
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++..+++ ++
T Consensus 132 --------~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~ 198 (535)
T PRK08451 132 --------EAFNALLKTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEP 198 (535)
T ss_pred --------HHHHHHHHHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 3445666666543 334666666777899999999998 78899999999999999999988876 77
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
..+..++..+.| +.+++.+++..|...
T Consensus 199 ~Al~~Ia~~s~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 199 EALEILARSGNG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHcCC-cHHHHHHHHHHHHHh
Confidence 888889998886 777888888766544
No 140
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.5e-14 Score=146.36 Aligned_cols=231 Identities=16% Similarity=0.215 Sum_probs=178.9
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-+||+.+.++- .+...-|.+.+-.+|-||+- |..-=-..+++|||+||++.+++.+|||.|+.-+|.|+-+=.+
T Consensus 170 ekpdvty~dvggc--keqieklrevve~pll~per--fv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 170 EKPDVTYSDVGGC--KEQIEKLREVVELPLLHPER--FVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred cCCCcccccccch--HHHHHHHHHHHhccccCHHH--HhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 4557899999997 88889999999999999975 3331234789999999999999999999999999999988777
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
.+.-|+ .|+
T Consensus 246 elvqky---vge-------------------------------------------------------------------- 254 (435)
T KOG0729|consen 246 ELVQKY---VGE-------------------------------------------------------------------- 254 (435)
T ss_pred HHHHHH---hhh--------------------------------------------------------------------
Confidence 775444 122
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc---------HHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS---------QRFYNLLDKLL 294 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~---------~~~~~~lk~~l 294 (837)
.-..+..||+.+..- +-|||||||||. +.|+ ++.-..+-.++
T Consensus 255 -------------------------garmvrelf~martk---kaciiffdeida-iggarfddg~ggdnevqrtmleli 305 (435)
T KOG0729|consen 255 -------------------------GARMVRELFEMARTK---KACIIFFDEIDA-IGGARFDDGAGGDNEVQRTMLELI 305 (435)
T ss_pred -------------------------hHHHHHHHHHHhccc---ceEEEEeecccc-ccCccccCCCCCcHHHHHHHHHHH
Confidence 122678899999886 889999999999 6554 22222222333
Q ss_pred Hhcc-----CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 003231 295 KKLS-----GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEV 367 (837)
Q Consensus 295 ~~l~-----g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~v 367 (837)
..|+ |||.|+=+ +|+++-.|.||.| |+-.+|++.+|+-|+|..||++|...+.
T Consensus 306 ~qldgfdprgnikvlma-----tnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms--------------- 365 (435)
T KOG0729|consen 306 NQLDGFDPRGNIKVLMA-----TNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS--------------- 365 (435)
T ss_pred HhccCCCCCCCeEEEee-----cCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc---------------
Confidence 3333 69988766 9999999999998 9999999999999999999998743222
Q ss_pred hhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 368 LAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 368 l~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
-..++-..=|+.+|-| -++++|.-+.-.|--|++. ..+-+.+.+||-.|+.
T Consensus 366 -verdir~ellarlcpn---stgaeirsvcteagmfair--------arrk~atekdfl~av~ 416 (435)
T KOG0729|consen 366 -VERDIRFELLARLCPN---STGAEIRSVCTEAGMFAIR--------ARRKVATEKDFLDAVN 416 (435)
T ss_pred -cccchhHHHHHhhCCC---CcchHHHHHHHHhhHHHHH--------HHhhhhhHHHHHHHHH
Confidence 2234455567789999 8999999998888888864 2234577899999988
No 141
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.53 E-value=9e-14 Score=155.03 Aligned_cols=177 Identities=25% Similarity=0.377 Sum_probs=129.9
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-cc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGL-LKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFG-ED 603 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~-~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s-~~~G-~~ 603 (837)
|+|++++++.+..++....++..+..... -..+.++||+||||||||++|+++|..++.+|+.++++.+.. .|+| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 99999999999988865433332221110 113588999999999999999999999999999999998875 5877 33
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 003231 604 EKNVRALFTLAA-------------------------------------------------------------------- 615 (837)
Q Consensus 604 e~~l~~lf~~A~-------------------------------------------------------------------- 615 (837)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 555666655550
Q ss_pred ----------------------------------------------------------------------hcCCeEEEec
Q 003231 616 ----------------------------------------------------------------------KVSPTIIFVD 625 (837)
Q Consensus 616 ----------------------------------------------------------------------~~~psVLfID 625 (837)
....+|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0135799999
Q ss_pred ccccccCCCCCcchHHHHHHHHHHHHHhhcccccc------CCceEEEEEec----CCCCCCcHHHHHHHHHhhhcCCCC
Q 003231 626 EVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR------NGERILVLAAT----NRPFDLDEAIIRRFERRIMVGLPS 695 (837)
Q Consensus 626 EID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~------~~~~vlVIaTT----N~~~~Ld~aL~rRF~~~I~~~~P~ 695 (837)
|||+++....+.+..-...-+.+.|+..++|-... +..++++||+. ..|.+|-|+|.-||+.++.+..++
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L~ 336 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDALT 336 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCCC
Confidence 99999876433222112234677788888774322 22468888765 357788899999999999999999
Q ss_pred HHHHHHHH
Q 003231 696 AENREMIL 703 (837)
Q Consensus 696 ~eer~~IL 703 (837)
.++...||
T Consensus 337 ~~dL~~IL 344 (443)
T PRK05201 337 EEDFVRIL 344 (443)
T ss_pred HHHHHHHh
Confidence 99999998
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.8e-13 Score=155.83 Aligned_cols=191 Identities=18% Similarity=0.256 Sum_probs=138.2
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..+.+++||. +|+||+|++.+++.|..++... +.++.+||+||||+|||++|+++|+.+
T Consensus 5 ~~~~~kyRP~---------~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 5 QVSSRKYRPQ---------TFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHHHHHhCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4567778877 9999999999999999988652 356779999999999999999999988
Q ss_pred CCc-------------------------EEEEeccccccccccccHHHHHHHHHHH----HhcCCeEEEecccccccCCC
Q 003231 584 GAS-------------------------FINVSMSTITSKWFGEDEKNVRALFTLA----AKVSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 584 g~~-------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A----~~~~psVLfIDEID~L~~~r 634 (837)
.+. ++.+++... . .-..++.+.+.. ....+.||||||+|.+..
T Consensus 64 ~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-- 135 (451)
T PRK06305 64 NCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-- 135 (451)
T ss_pred cCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--
Confidence 432 333332111 0 112333333322 224568999999998842
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV-- 712 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~-- 712 (837)
...+.|+..++.. +..+++|++|+.+..+.+.+++|+ ..+.|..++.++...+++..+.+.+.
T Consensus 136 ----------~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i 200 (451)
T PRK06305 136 ----------EAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIET 200 (451)
T ss_pred ----------HHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2345666666652 335677777788889999999999 68899999999999999998887764
Q ss_pred ChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 713 EDLDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 713 ~d~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
++..+..|+..+.| +.+++.+++...
T Consensus 201 ~~~al~~L~~~s~g-dlr~a~~~Lekl 226 (451)
T PRK06305 201 SREALLPIARAAQG-SLRDAESLYDYV 226 (451)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 77788889998876 555555555543
No 143
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-13 Score=158.91 Aligned_cols=235 Identities=17% Similarity=0.219 Sum_probs=180.0
Q ss_pred CCCccccccccccccccHHHHHHHHHHHHhhccccc-ccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEe
Q 003231 62 DGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSE-ISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLL 140 (837)
Q Consensus 62 ~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~-~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~l 140 (837)
..+.+.|+|.+.-+- |+.|..|.+.+- .||.|. |.+.+. -.++++||.||+..++++||||.|.+-++++.-+
T Consensus 141 ~~~~~~v~F~DVAG~--dEakeel~EiVd-fLk~p~ky~~lGa---kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i 214 (596)
T COG0465 141 LEDQVKVTFADVAGV--DEAKEELSELVD-FLKNPKKYQALGA---KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 214 (596)
T ss_pred cccccCcChhhhcCc--HHHHHHHHHHHH-HHhCchhhHhccc---ccccceeEecCCCCCcHHHHHHHhcccCCCceec
Confidence 344899999999996 999999999875 566653 444444 5899999999999999999999999999999999
Q ss_pred eccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccC
Q 003231 141 DVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRN 220 (837)
Q Consensus 141 d~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (837)
-.++|..=+ -|-
T Consensus 215 SGS~FVemf---VGv----------------------------------------------------------------- 226 (596)
T COG0465 215 SGSDFVEMF---VGV----------------------------------------------------------------- 226 (596)
T ss_pred cchhhhhhh---cCC-----------------------------------------------------------------
Confidence 988885311 000
Q ss_pred CCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHH
Q 003231 221 ASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDK 292 (837)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~ 292 (837)
..--+.-||+=+.+ +.|||+||||||..=+.+ .+--..+..
T Consensus 227 ----------------------------GAsRVRdLF~qAkk---~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQ 275 (596)
T COG0465 227 ----------------------------GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQ 275 (596)
T ss_pred ----------------------------CcHHHHHHHHHhhc---cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHH
Confidence 00023446665555 489999999999932211 222223344
Q ss_pred HHHhccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 003231 293 LLKKLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIA 365 (837)
Q Consensus 293 ~l~~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~ 365 (837)
+|..++| +|.+|++ ||+++-.|.||.| ||-.+|.|..||-.+|.+||+.| .+
T Consensus 276 lLvEmDGF~~~~gviviaa-----TNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH----------------~~ 334 (596)
T COG0465 276 LLVEMDGFGGNEGVIVIAA-----TNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVH----------------AK 334 (596)
T ss_pred HHhhhccCCCCCceEEEec-----CCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHH----------------hh
Confidence 4444444 6888887 9999999999998 99999999999999999999985 33
Q ss_pred HHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhh
Q 003231 366 EVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQ 433 (837)
Q Consensus 366 ~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 433 (837)
.+-.+.+++...++..+-. ++++..+.++-.|+-++..++. -.|++.+|+.+.+.+=
T Consensus 335 ~~~l~~~Vdl~~iAr~tpG---fsGAdL~nl~NEAal~aar~n~--------~~i~~~~i~ea~drv~ 391 (596)
T COG0465 335 NKPLAEDVDLKKIARGTPG---FSGADLANLLNEAALLAARRNK--------KEITMRDIEEAIDRVI 391 (596)
T ss_pred cCCCCCcCCHHHHhhhCCC---cccchHhhhHHHHHHHHHHhcC--------eeEeccchHHHHHHHh
Confidence 4555667788888888988 9999999999888888876554 4489999999998553
No 144
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.4e-13 Score=152.29 Aligned_cols=190 Identities=18% Similarity=0.258 Sum_probs=135.0
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
-+..++||. +|++|+|++.+++.|+.++... +.++.+||+||||+|||++|+++|+.+.
T Consensus 5 ~l~~k~RP~---------~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 5 VIARKYRPK---------KFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred HHHHhcCCC---------cHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 356677877 8999999999999998888642 4556799999999999999999999996
Q ss_pred Cc--------------------------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccc
Q 003231 585 AS--------------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVD 628 (837)
Q Consensus 585 ~~--------------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID 628 (837)
+. ++.++... ......++.+.+.+... ...|+||||+|
T Consensus 64 c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~ 137 (397)
T PRK14955 64 CQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVH 137 (397)
T ss_pred CCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChh
Confidence 52 11111110 01134455555554322 34699999999
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh
Q 003231 629 SMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLA 708 (837)
Q Consensus 629 ~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~ 708 (837)
.+.. ...+.|+..++. ++..+++|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+.
T Consensus 138 ~l~~------------~~~~~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 138 MLSI------------AAFNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred hCCH------------HHHHHHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHH
Confidence 8842 223445555543 2234555556666788889999999 6899999999999999999888
Q ss_pred hcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 709 KEKV--EDLDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 709 ~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
..+. ++..++.|+..+.| +.+.+.+.+..+
T Consensus 201 ~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl 232 (397)
T PRK14955 201 AEGISVDADALQLIGRKAQG-SMRDAQSILDQV 232 (397)
T ss_pred HcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7664 78888999998886 555666655544
No 145
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3e-13 Score=152.23 Aligned_cols=191 Identities=19% Similarity=0.262 Sum_probs=137.8
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
-+.+++||. +|++++|++.+++.+...+... +.++++|||||||+|||++|+++|+.+.
T Consensus 6 ~~~~k~rP~---------~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 6 VSARKYRPQ---------TFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HHHHHHCCC---------cHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467788877 8999999999999999888652 3567899999999999999999999885
Q ss_pred CcE------------EEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHH
Q 003231 585 ASF------------INVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKN 648 (837)
Q Consensus 585 ~~~------------i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~ 648 (837)
.+. +.++.. .......++.+++.+... .+.||+|||+|.+.. ...+
T Consensus 65 ~~~~~~~~~~~~~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~ 126 (367)
T PRK14970 65 QPGYDDPNEDFSFNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFN 126 (367)
T ss_pred CCCCCCCCCCCCcceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHH
Confidence 421 112111 112234566677665432 357999999998742 2245
Q ss_pred HHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCC
Q 003231 649 EFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEG 726 (837)
Q Consensus 649 ~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G 726 (837)
.|+..++.. +...++|.+|+.+..+.+++.+|+ ..+.++.|+.++...++...+.++++ ++..+..|+..+.|
T Consensus 127 ~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 127 AFLKTLEEP----PAHAIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred HHHHHHhCC----CCceEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 555555442 233566666777788999999998 67899999999999999998888775 77888888888775
Q ss_pred CCHHHHHHHHHHHH
Q 003231 727 YSGSDLKNLCVTAA 740 (837)
Q Consensus 727 ~sg~DL~~L~~~Aa 740 (837)
+.+.+.+.+...+
T Consensus 202 -dlr~~~~~lekl~ 214 (367)
T PRK14970 202 -ALRDALSIFDRVV 214 (367)
T ss_pred -CHHHHHHHHHHHH
Confidence 5555555555443
No 146
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.9e-13 Score=159.03 Aligned_cols=190 Identities=22% Similarity=0.250 Sum_probs=139.2
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
-+..++||. +|++|+|++.+++.|+..+... +.++.+||+||+|+|||++|+++|+.+.
T Consensus 5 ~l~~kyRP~---------~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 5 GTATKRRPR---------DFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHHHhCCC---------CHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 356677777 8999999999999999988651 3456799999999999999999999986
Q ss_pred Cc------------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCCC
Q 003231 585 AS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~~ 636 (837)
+. ++.++... ...-..++.+.+.+.. ....|+||||+|.|..
T Consensus 64 c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---- 133 (563)
T PRK06647 64 CVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---- 133 (563)
T ss_pred cccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH----
Confidence 42 22222110 0112344555544332 3457999999998832
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..++. ++..+++|++|+.+..+.+++++|+ ..+.|..++.++...+++..+...++ ++
T Consensus 134 --------~a~naLLK~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~ 200 (563)
T PRK06647 134 --------SAFNALLKTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYED 200 (563)
T ss_pred --------HHHHHHHHhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 345566666654 3345677777777888999999999 57899999999999999998887775 67
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
..+..|+..+.| +.+++.+++..+
T Consensus 201 eAl~lLa~~s~G-dlR~alslLdkl 224 (563)
T PRK06647 201 EALKWIAYKSTG-SVRDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 888889988887 566666666543
No 147
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=4.1e-13 Score=158.49 Aligned_cols=199 Identities=20% Similarity=0.218 Sum_probs=144.3
Q ss_pred CCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003231 502 PDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 502 ~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~ 581 (837)
...-+..++||. +|++|+|++.+++.|..++... +.++++||+||+|+|||++|+.+|+
T Consensus 10 ~y~~la~KyRP~---------~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 10 PYRVLARKYRPQ---------TFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred cchhHHhhhCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHH
Confidence 356688889988 8999999999999999988652 4567899999999999999999999
Q ss_pred HhCCcEEEEe-------------ccccccc------cc----cccHHHHHHHHHHHHhc----CCeEEEecccccccCCC
Q 003231 582 EAGASFINVS-------------MSTITSK------WF----GEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 582 elg~~~i~v~-------------~s~l~s~------~~----G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r 634 (837)
.+.+.....+ |..+... .+ ...-..++.+++.+... ...|+||||+|.|..
T Consensus 69 ~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-- 146 (598)
T PRK09111 69 ALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-- 146 (598)
T ss_pred hhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--
Confidence 9865422111 0000000 00 01234567777766543 357999999998832
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV-- 712 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~-- 712 (837)
...+.|+..++.. ...+++|.+|+.+..+.+.+++|| ..+.|..++.++...+++..+.+++.
T Consensus 147 ----------~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i 211 (598)
T PRK09111 147 ----------AAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEV 211 (598)
T ss_pred ----------HHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 2345666665542 334666666777778888999999 68999999999999999999988775
Q ss_pred ChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 713 EDLDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 713 ~d~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
++..+..|+..+.| +.+++.+++..+
T Consensus 212 ~~eAl~lIa~~a~G-dlr~al~~Ldkl 237 (598)
T PRK09111 212 EDEALALIARAAEG-SVRDGLSLLDQA 237 (598)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 67778888888876 566766666554
No 148
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.7e-13 Score=156.93 Aligned_cols=192 Identities=22% Similarity=0.344 Sum_probs=137.5
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|..++||. +|++++|++.+++.|...+... +.++.+||+||+|+|||++|+.+|+.+
T Consensus 4 ~~~~~kyRP~---------~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 4 IPFARKYRPK---------FFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred hHHHHhhCCC---------cHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3577788877 8999999999999999988651 345668999999999999999999988
Q ss_pred CCc------------------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCC
Q 003231 584 GAS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~ 635 (837)
++. ++.++.+. ......++.+.+.+... .+.|++|||+|.|..
T Consensus 63 ~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--- 133 (486)
T PRK14953 63 NCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--- 133 (486)
T ss_pred cCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---
Confidence 641 12221110 01223355565555433 357999999998732
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.|+..++.. +..+++|.+|+.++.+.+++++|+ ..+.|+.|+.++...+++.++...++ +
T Consensus 134 ---------~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id 199 (486)
T PRK14953 134 ---------EAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYE 199 (486)
T ss_pred ---------HHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2335566555542 233555555666788888999999 57899999999999999999988776 6
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
+..+..|+..+.| +.+++.+++..++
T Consensus 200 ~~al~~La~~s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 200 EKALDLLAQASEG-GMRDAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 6778888888876 4566666665553
No 149
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.50 E-value=3.5e-13 Score=140.44 Aligned_cols=188 Identities=24% Similarity=0.370 Sum_probs=139.4
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITS 597 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s 597 (837)
.+.+++++|.+..++.|.+-... |-.+ .|..++||+|++|||||++++++..++ |..+|+|...++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~ 93 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD 93 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc
Confidence 56899999999999998766644 2222 578999999999999999999999877 78899998776643
Q ss_pred ccccccHHHHHHHHHHHHhc-CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 598 KWFGEDEKNVRALFTLAAKV-SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 598 ~~~G~~e~~l~~lf~~A~~~-~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
+..+++..+.. .+-|||+||+- +... + .-...|...++|.....+.+|+|.+|+|+.+.
T Consensus 94 ---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~~----d-----~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 94 ---------LPELLDLLRDRPYKFILFCDDLS--FEEG----D-----TEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ---------HHHHHHHHhcCCCCEEEEecCCC--CCCC----c-----HHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 45566665543 45799999974 2211 1 23466777889888888899999999998432
Q ss_pred C---------------c------H--HHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHH----HHHcCCC
Q 003231 677 L---------------D------E--AIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKEL----AAMTEGY 727 (837)
Q Consensus 677 L---------------d------~--aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~L----A~~t~G~ 727 (837)
+ . + +|.+||...|.|..|+.++-.+|++.++...++ +...+..- |..-.|.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~R 233 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGR 233 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 2 1 1 445599999999999999999999999988876 43444333 3344578
Q ss_pred CHHHHHHHHH
Q 003231 728 SGSDLKNLCV 737 (837)
Q Consensus 728 sg~DL~~L~~ 737 (837)
||+--...+.
T Consensus 234 SGRtA~QF~~ 243 (249)
T PF05673_consen 234 SGRTARQFID 243 (249)
T ss_pred CHHHHHHHHH
Confidence 8876555543
No 150
>PRK06893 DNA replication initiation factor; Validated
Probab=99.50 E-value=1e-12 Score=138.33 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=113.5
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITS 597 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s 597 (837)
..+|++.+|.++.. .+..+... +.. .....++|+||||||||+|++++|+++ +....++++.....
T Consensus 12 ~~~fd~f~~~~~~~-~~~~~~~~-------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~ 80 (229)
T PRK06893 12 DETLDNFYADNNLL-LLDSLRKN-------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY 80 (229)
T ss_pred cccccccccCChHH-HHHHHHHH-------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh
Confidence 45899988766532 12211111 111 123468999999999999999999986 44555555532111
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCC
Q 003231 598 KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDL 677 (837)
Q Consensus 598 ~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~L 677 (837)
....++.... ...+|+|||++.+.+... . ...+...++.... .+..++|++++..|..+
T Consensus 81 --------~~~~~~~~~~--~~dlLilDDi~~~~~~~~------~----~~~l~~l~n~~~~-~~~~illits~~~p~~l 139 (229)
T PRK06893 81 --------FSPAVLENLE--QQDLVCLDDLQAVIGNEE------W----ELAIFDLFNRIKE-QGKTLLLISADCSPHAL 139 (229)
T ss_pred --------hhHHHHhhcc--cCCEEEEeChhhhcCChH------H----HHHHHHHHHHHHH-cCCcEEEEeCCCChHHc
Confidence 1112222222 457999999998864321 1 1123333333222 22334455555566555
Q ss_pred c---HHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHH
Q 003231 678 D---EAIIRRFE--RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLC 736 (837)
Q Consensus 678 d---~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~ 736 (837)
+ +.+++|+. ..+.++.|+.++|..|++..+...++ ++..+..|+.++.| +.+.+.+++
T Consensus 140 ~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l 204 (229)
T PRK06893 140 SIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDAL 204 (229)
T ss_pred cccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHH
Confidence 4 89999884 47789999999999999988876665 88889999998885 444554444
No 151
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.50 E-value=1.6e-12 Score=147.46 Aligned_cols=203 Identities=20% Similarity=0.254 Sum_probs=135.5
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccc-
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTITSK- 598 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l~s~- 598 (837)
+.++|.++..+.|...+...+.. ..+.+++|+||||||||++++.+++++ ++.++.++|....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 35899999999998887543221 234579999999999999999999887 578899998654321
Q ss_pred ---------ccc-------cc-HHHHHHHHHHHHh-cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc
Q 003231 599 ---------WFG-------ED-EKNVRALFTLAAK-VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR 660 (837)
Q Consensus 599 ---------~~G-------~~-e~~l~~lf~~A~~-~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~ 660 (837)
..+ .. ...+..+...... ..+.||+|||+|.+.... . ...+..++..++..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~-------~~~l~~l~~~~~~~--- 169 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G-------NDVLYSLLRAHEEY--- 169 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C-------chHHHHHHHhhhcc---
Confidence 111 11 2223333333332 346799999999986211 1 13344454444433
Q ss_pred CCceEEEEEecCCC---CCCcHHHHHHHH-HhhhcCCCCHHHHHHHHHHHHhhc----CCChhhHHHHHHHcCCCC--HH
Q 003231 661 NGERILVLAATNRP---FDLDEAIIRRFE-RRIMVGLPSAENREMILKTLLAKE----KVEDLDFKELAAMTEGYS--GS 730 (837)
Q Consensus 661 ~~~~vlVIaTTN~~---~~Ld~aL~rRF~-~~I~~~~P~~eer~~IL~~~l~~~----~~~d~dl~~LA~~t~G~s--g~ 730 (837)
.+.++.+|+++|.. ..+++.+.+||. ..+.|++++.++..+|++..+... .+++..++.+++.+.+.+ .+
T Consensus 170 ~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r 249 (394)
T PRK00411 170 PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDAR 249 (394)
T ss_pred CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHH
Confidence 23368888888875 357788888873 567999999999999999887642 236667788888875422 34
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003231 731 DLKNLCVTAAYRPVREL 747 (837)
Q Consensus 731 DL~~L~~~Aa~~av~r~ 747 (837)
.+..+|..|+..|..+.
T Consensus 250 ~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 250 VAIDLLRRAGLIAEREG 266 (394)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 45577777777666543
No 152
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=1.5e-12 Score=145.98 Aligned_cols=202 Identities=21% Similarity=0.236 Sum_probs=133.3
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccccc
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG---------ASFINVSMSTIT 596 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg---------~~~i~v~~s~l~ 596 (837)
+++|.++.++.|..++...+.. ..+.+++|+||||||||++++++++++. +.++.++|....
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 5899999999998887642211 2346799999999999999999998762 578889987643
Q ss_pred cc----------cc--cc--------cHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhc
Q 003231 597 SK----------WF--GE--------DEKNVRALFTLAAK-VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWD 655 (837)
Q Consensus 597 s~----------~~--G~--------~e~~l~~lf~~A~~-~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld 655 (837)
+. .. |. .......++..... ..+.||+|||+|.+.+.. . .++..++..++
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-~--------~~L~~l~~~~~ 157 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-D--------DLLYQLSRARS 157 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-c--------HHHHhHhcccc
Confidence 31 10 11 12223444444432 346799999999997321 1 23334433211
Q ss_pred cccccCCceEEEEEecCCCC---CCcHHHHHHHH-HhhhcCCCCHHHHHHHHHHHHhh---cC-CChhhHHHHHHH---c
Q 003231 656 GLLTRNGERILVLAATNRPF---DLDEAIIRRFE-RRIMVGLPSAENREMILKTLLAK---EK-VEDLDFKELAAM---T 724 (837)
Q Consensus 656 ~~~~~~~~~vlVIaTTN~~~---~Ld~aL~rRF~-~~I~~~~P~~eer~~IL~~~l~~---~~-~~d~dl~~LA~~---t 724 (837)
. ....+.++.+|+++|.+. .+++.+.+||. ..+.|++++.+++..|++..+.. .. +++..++.++.. +
T Consensus 158 ~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 236 (365)
T TIGR02928 158 N-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE 236 (365)
T ss_pred c-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Confidence 1 122335688899999875 57888888884 56899999999999999988762 11 344444554444 3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 003231 725 EGYSGSDLKNLCVTAAYRPVREL 747 (837)
Q Consensus 725 ~G~sg~DL~~L~~~Aa~~av~r~ 747 (837)
.|. .+.+.++|..|+..|..+.
T Consensus 237 ~Gd-~R~al~~l~~a~~~a~~~~ 258 (365)
T TIGR02928 237 HGD-ARKAIDLLRVAGEIAEREG 258 (365)
T ss_pred cCC-HHHHHHHHHHHHHHHHHcC
Confidence 453 4555678888887776653
No 153
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.49 E-value=1.8e-12 Score=137.10 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=115.3
Q ss_pred ccccccc-c-chHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 003231 522 VTFADIG-A-LNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTIT 596 (837)
Q Consensus 522 v~fddIi-G-~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~ 596 (837)
.+|++.+ | ...+...+..+... ....+++|+||||||||+|++++|+++ |..+.+++.....
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 4677755 4 44566666655432 123579999999999999999999876 4445566554422
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 597 SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 597 s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
.. ...+++.... ..+|+|||++.+.+... ..+....+++.+ ++ .+...+++++++.|..
T Consensus 86 ~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~~---~~~~lf~l~n~~---~e-----~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 86 WF--------VPEVLEGMEQ--LSLVCIDNIECIAGDEL---WEMAIFDLYNRI---LE-----SGRTRLLITGDRPPRQ 144 (235)
T ss_pred hh--------hHHHHHHhhh--CCEEEEeChhhhcCCHH---HHHHHHHHHHHH---HH-----cCCCeEEEeCCCChHH
Confidence 11 1122222222 36899999998854211 111222222222 11 1222355555566655
Q ss_pred ---CcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 677 ---LDEAIIRRFE--RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 677 ---Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
+.|.+++||. .++.+..|+.+++.++++......++ ++..++.|+.+++| +.+.+.+++.
T Consensus 145 l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~ 211 (235)
T PRK08084 145 LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLD 211 (235)
T ss_pred cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHH
Confidence 5799999996 67788999999999999987776655 88889999999885 5556655554
No 154
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.49 E-value=1e-12 Score=144.27 Aligned_cols=191 Identities=24% Similarity=0.278 Sum_probs=132.6
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
-|.+++||. +|++++|++++++.+..++.. ....+++|+||||||||++++++++++.
T Consensus 6 ~w~~kyrP~---------~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 6 IWVEKYRPR---------TLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred ccchhhCCC---------cHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 477788876 899999999999999988854 1223689999999999999999999872
Q ss_pred -----CcEEEEeccccccccccccHHHHHHH-HHHHHh-----cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHh
Q 003231 585 -----ASFINVSMSTITSKWFGEDEKNVRAL-FTLAAK-----VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTH 653 (837)
Q Consensus 585 -----~~~i~v~~s~l~s~~~G~~e~~l~~l-f~~A~~-----~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ 653 (837)
.+++.+++++... ...++.. ...+.. ..+.+|+|||+|.+.. ...+.|...
T Consensus 64 ~~~~~~~~i~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------~~~~~L~~~ 125 (319)
T PRK00440 64 GEDWRENFLELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------DAQQALRRT 125 (319)
T ss_pred CCccccceEEeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------HHHHHHHHH
Confidence 3456665543211 1112222 222222 2346999999998832 112334444
Q ss_pred hccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHH
Q 003231 654 WDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSD 731 (837)
Q Consensus 654 ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~D 731 (837)
++.. ..+..+|.++|.+..+.+.+.+|+ ..+.|+.++.++...+++.++.+.++ ++..+..++..+.| +.+.
T Consensus 126 le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~ 199 (319)
T PRK00440 126 MEMY----SQNTRFILSCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRK 199 (319)
T ss_pred HhcC----CCCCeEEEEeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 4432 123456667787788888899998 57899999999999999999988775 77889999998876 4445
Q ss_pred HHHHHHHHHH
Q 003231 732 LKNLCVTAAY 741 (837)
Q Consensus 732 L~~L~~~Aa~ 741 (837)
+.+.++.++.
T Consensus 200 ~~~~l~~~~~ 209 (319)
T PRK00440 200 AINALQAAAA 209 (319)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 155
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=8.2e-13 Score=156.91 Aligned_cols=189 Identities=21% Similarity=0.279 Sum_probs=140.2
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|..++|+. +|++++|++.+++.|..++... +..+++||+||+|+|||++|+++|+.+
T Consensus 4 ~pl~~kyRP~---------~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 4 EPLHHKYRPQ---------RFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred chHHHHhCCC---------cHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4577788877 8999999999999999988652 335689999999999999999999998
Q ss_pred CCc--------------------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCC
Q 003231 584 GAS--------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 584 g~~--------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~ 633 (837)
++. +++++.. .......++.++..+... ...|+||||+|.|..
T Consensus 63 ~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~- 135 (620)
T PRK14948 63 NCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST- 135 (620)
T ss_pred cCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-
Confidence 652 2222211 123345677777766543 346999999998832
Q ss_pred CCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC-
Q 003231 634 RTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV- 712 (837)
Q Consensus 634 r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~- 712 (837)
...+.|+..++. ....+++|++|+.+..+.+.+++|+ ..+.|..++.++....+..++.+++.
T Consensus 136 -----------~a~naLLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 136 -----------AAFNALLKTLEE----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred -----------HHHHHHHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 344666666664 3345677777778888999999999 77899999999988888888887654
Q ss_pred -ChhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 713 -EDLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 713 -~d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
++..+..++..+.|- .+++.+++.
T Consensus 200 is~~al~~La~~s~G~-lr~A~~lLe 224 (620)
T PRK14948 200 IEPEALTLVAQRSQGG-LRDAESLLD 224 (620)
T ss_pred CCHHHHHHHHHHcCCC-HHHHHHHHH
Confidence 667788888888874 355555544
No 156
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.48 E-value=4.7e-12 Score=149.56 Aligned_cols=194 Identities=17% Similarity=0.249 Sum_probs=130.1
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccc
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSMST 594 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~s~ 594 (837)
+.|.|.++..+.|..++...+.. ..+...++|+||||||||++++.++.++ .+.+++|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56999999999999888664332 1233446799999999999999998776 26678999965
Q ss_pred ccccc----------c------c-ccHHHHHHHHHHHH--hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhc
Q 003231 595 ITSKW----------F------G-EDEKNVRALFTLAA--KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWD 655 (837)
Q Consensus 595 l~s~~----------~------G-~~e~~l~~lf~~A~--~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld 655 (837)
+...+ . | .....+..+|.... .....||+|||||.|.... + .++-.|+ +
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-----Q----DVLYnLF---R 894 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-----Q----KVLFTLF---D 894 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH-----H----HHHHHHH---H
Confidence 43321 0 1 12234556666542 2235699999999996521 1 2222222 2
Q ss_pred cccccCCceEEEEEecCC---CCCCcHHHHHHHHH-hhhcCCCCHHHHHHHHHHHHhhc--CCChhhHHHHHHHcCCCCH
Q 003231 656 GLLTRNGERILVLAATNR---PFDLDEAIIRRFER-RIMVGLPSAENREMILKTLLAKE--KVEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 656 ~~~~~~~~~vlVIaTTN~---~~~Ld~aL~rRF~~-~I~~~~P~~eer~~IL~~~l~~~--~~~d~dl~~LA~~t~G~sg 729 (837)
.. ...+.+++||+++|. +..+++.+++||.. ++.|++++.+++.+||+..+... .+++..++.+|+.....+
T Consensus 895 ~~-~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S- 972 (1164)
T PTZ00112 895 WP-TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS- 972 (1164)
T ss_pred Hh-hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC-
Confidence 11 123457999999986 45678889898854 48899999999999999988753 237777888888655332
Q ss_pred HHHH---HHHHHHH
Q 003231 730 SDLK---NLCVTAA 740 (837)
Q Consensus 730 ~DL~---~L~~~Aa 740 (837)
+|++ .+|+.|+
T Consensus 973 GDARKALDILRrAg 986 (1164)
T PTZ00112 973 GDIRKALQICRKAF 986 (1164)
T ss_pred CHHHHHHHHHHHHH
Confidence 3444 4444444
No 157
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.47 E-value=1.6e-12 Score=135.79 Aligned_cols=184 Identities=20% Similarity=0.233 Sum_probs=121.9
Q ss_pred ccccccc--cchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 003231 522 VTFADIG--ALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTIT 596 (837)
Q Consensus 522 v~fddIi--G~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~ 596 (837)
.+|++.+ +...+++.+++++.. ....+++|+||+|||||++|+++++++ +.+++.+++..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 4677765 355577777776532 346789999999999999999999887 5788999988775
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 597 SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 597 s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
... ..++.... .+.+|+|||++.+.... .. ...+...++..... + ..+|+.++..+..
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~------~~----~~~L~~~l~~~~~~-~-~~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAGQP------EW----QEALFHLYNRVREA-G-GRLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcCCh------HH----HHHHHHHHHHHHHc-C-CeEEEECCCChHH
Confidence 421 22332222 34699999999874321 01 12222222222111 1 2344443334433
Q ss_pred C---cHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 677 L---DEAIIRRFE--RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 677 L---d~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
+ .+.+.+||. ..+.++.|+.+++..+++.++...++ ++..+..|+..+. -+.+++.+++..+..
T Consensus 137 ~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 137 LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDR 207 (226)
T ss_pred CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 3 278888984 57889999999999999988776554 7777888888755 477888888776554
No 158
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.47 E-value=3.1e-12 Score=134.31 Aligned_cols=178 Identities=19% Similarity=0.214 Sum_probs=116.8
Q ss_pred Cccccccc--cchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 003231 521 GVTFADIG--ALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTI 595 (837)
Q Consensus 521 ~v~fddIi--G~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l 595 (837)
..+|++++ +...+...+..+... .....+++|+||+|||||+||+++++++ +.+++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 35788866 335566666665531 1345689999999999999999999876 678888888765
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC-
Q 003231 596 TSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP- 674 (837)
Q Consensus 596 ~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~- 674 (837)
... + .......+|+|||+|.+.+. .. ..+...++.... .+..+++++++..+
T Consensus 82 ~~~------------~--~~~~~~~~liiDdi~~l~~~-----~~-------~~L~~~~~~~~~-~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------F--DFDPEAELYAVDDVERLDDA-----QQ-------IALFNLFNRVRA-HGQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------H--hhcccCCEEEEeChhhcCch-----HH-------HHHHHHHHHHHH-cCCcEEEEeCCCCHH
Confidence 321 1 11224579999999987321 11 222233322211 22223444443333
Q ss_pred -CCCcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 675 -FDLDEAIIRRFE--RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 675 -~~Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
..+.+.+++||. ..+.++.|+.+++..+++.+....++ ++..++.|+..+.| +.+++.++++.
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 245688998984 58889999999999999988776655 77788888887665 66677666653
No 159
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.2e-12 Score=152.54 Aligned_cols=194 Identities=19% Similarity=0.249 Sum_probs=134.4
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
-+..++||. +|++|+|++.+++.|+.++... +-++++||+||+|||||++|+.+|+.+.
T Consensus 5 ~l~~kyRP~---------~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 5 VIARKYRPS---------KFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred HHHHHHCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 356677877 8999999999999999987652 4566799999999999999999999997
Q ss_pred CcEEE----------Eecc------ccc-------cccccc---cHHHHHHHHHHHHh----cCCeEEEecccccccCCC
Q 003231 585 ASFIN----------VSMS------TIT-------SKWFGE---DEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 585 ~~~i~----------v~~s------~l~-------s~~~G~---~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r 634 (837)
+.-.. -.|. .+. ..+.|. ....++.+.+.+.. ....|+||||+|.|..
T Consensus 64 c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-- 141 (620)
T PRK14954 64 CQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-- 141 (620)
T ss_pred CCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--
Confidence 62100 0000 000 001111 12345555554422 2356999999998842
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV-- 712 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~-- 712 (837)
...+.|+..++.. +..+++|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++..++.
T Consensus 142 ----------~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I 206 (620)
T PRK14954 142 ----------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQI 206 (620)
T ss_pred ----------HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2245666665542 233555555666788989999999 78999999999999999988887664
Q ss_pred ChhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 713 EDLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 713 ~d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
++..++.|+.++.| +.+++.+.+.
T Consensus 207 ~~eal~~La~~s~G-dlr~al~eLe 230 (620)
T PRK14954 207 DADALQLIARKAQG-SMRDAQSILD 230 (620)
T ss_pred CHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 78888999999886 4444444443
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.4e-12 Score=150.68 Aligned_cols=188 Identities=18% Similarity=0.252 Sum_probs=138.5
Q ss_pred HHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA 585 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~ 585 (837)
+..++||. +|++|+|++.+++.|...+... +.++.+||+||+|+|||++|+.+|+.+.+
T Consensus 7 ~~~kyRP~---------~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 7 SARKYRPS---------TFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred HHHHHCCC---------CHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56677877 8999999999999999988652 35567999999999999999999998753
Q ss_pred -------------------------cEEEEeccccccccccccHHHHHHHHHHHHhcC----CeEEEecccccccCCCCC
Q 003231 586 -------------------------SFINVSMSTITSKWFGEDEKNVRALFTLAAKVS----PTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 586 -------------------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~----psVLfIDEID~L~~~r~~ 636 (837)
+++.+++.+- .....++.+...+...+ ..|++|||+|.|..
T Consensus 66 ~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---- 135 (614)
T PRK14971 66 QNLTADGEACNECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---- 135 (614)
T ss_pred CCCCCCCCCCCcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH----
Confidence 2333332210 11344666666654432 46999999998832
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..++.. +..+++|.+|+.+..+-+.+++|+ ..+.|..++.++....++.++..+++ ++
T Consensus 136 --------~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~ 202 (614)
T PRK14971 136 --------AAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEP 202 (614)
T ss_pred --------HHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 2345666666543 334566666667788999999999 78999999999999999999988876 56
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
..+..|+..+.| +.+++.+++..
T Consensus 203 ~al~~La~~s~g-dlr~al~~Lek 225 (614)
T PRK14971 203 EALNVIAQKADG-GMRDALSIFDQ 225 (614)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHH
Confidence 678889988875 55566555544
No 161
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.5e-13 Score=144.85 Aligned_cols=208 Identities=16% Similarity=0.231 Sum_probs=155.7
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
.--++||++..+. -...-.|.+..-+||+.+++..-. =-..+.+.|||||++.+++.||+|.|...|+.+|.+-++
T Consensus 125 ~~~~~s~~~~ggl--~~qirelre~ielpl~np~lf~rv--gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss 200 (388)
T KOG0651|consen 125 DPRNISFENVGGL--FYQIRELREVIELPLTNPELFLRV--GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSS 200 (388)
T ss_pred CccccCHHHhCCh--HHHHHHHHhheEeeccCchhcccc--CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHh
Confidence 3345789999986 555667889999999999993321 235789999999999999999999999999999999998
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
-|-+|+ -|+|.
T Consensus 201 ~lv~ky---iGEsa------------------------------------------------------------------ 211 (388)
T KOG0651|consen 201 ALVDKY---IGESA------------------------------------------------------------------ 211 (388)
T ss_pred hhhhhh---cccHH------------------------------------------------------------------
Confidence 886544 23321
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc-----------HH-HHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS-----------QR-FYNLLD 291 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-----------~~-~~~~lk 291 (837)
.+|...|.-+... +||||||||||....++ ++ .|+++.
T Consensus 212 ---------------------------RlIRemf~yA~~~---~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 212 ---------------------------RLIRDMFRYAREV---IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLN 261 (388)
T ss_pred ---------------------------HHHHHHHHHHhhh---CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHH
Confidence 2788888888887 99999999999954332 11 455444
Q ss_pred HH--HHhccCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 003231 292 KL--LKKLSGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEV 367 (837)
Q Consensus 292 ~~--l~~l~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~v 367 (837)
.| ++. -++|-+|-+ +|+++-.|.+|.| |+..+++|++|++..|+.|+|.|-..-..+=.+ .++.+ +
T Consensus 262 qmdgfd~-l~rVk~Ima-----tNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Gei--d~eai--v 331 (388)
T KOG0651|consen 262 QMDGFDT-LHRVKTIMA-----TNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEI--DDEAI--L 331 (388)
T ss_pred hhccchh-cccccEEEe-----cCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccc--cHHHH--H
Confidence 33 122 257777776 8999999999998 999999999999999999999875444433122 23333 4
Q ss_pred hhcCCCChhHHhhcccC
Q 003231 368 LAANDLECDDLGSICQA 384 (837)
Q Consensus 368 l~~~~~~~~dL~~~~~~ 384 (837)
...+++.+.||...|-.
T Consensus 332 K~~d~f~gad~rn~~tE 348 (388)
T KOG0651|consen 332 KLVDGFNGADLRNVCTE 348 (388)
T ss_pred HHHhccChHHHhhhccc
Confidence 55666777777777765
No 162
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2e-12 Score=153.63 Aligned_cols=190 Identities=19% Similarity=0.281 Sum_probs=136.3
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|.+++||. +|++|+|++.+++.|..++... +.++.+||+||+|+|||++|+.+|+.+
T Consensus 4 ~~l~~kyRP~---------~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 4 QVLYRKWRSQ---------TFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHHHHHhCCC---------CHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888888 9999999999999998888652 345668999999999999999999988
Q ss_pred CCcE-------------------------EEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCC
Q 003231 584 GASF-------------------------INVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 584 g~~~-------------------------i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r 634 (837)
++.. +.++.+. ......++.+.+.+.. ....||||||+|.|..
T Consensus 63 ~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-- 134 (585)
T PRK14950 63 NCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-- 134 (585)
T ss_pred cCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--
Confidence 5422 2222210 1122334555544432 2357999999998842
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV-- 712 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~-- 712 (837)
...+.|+..++.. ...+++|.+++..+.+.+.+++|+ .++.|..++..+...+++.++...++
T Consensus 135 ----------~a~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i 199 (585)
T PRK14950 135 ----------AAFNALLKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINL 199 (585)
T ss_pred ----------HHHHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2345566665543 234566666777778888999998 67899999999999999998888765
Q ss_pred ChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 713 EDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 713 ~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
++..+..|+..+.| +.+++.+++..
T Consensus 200 ~~eal~~La~~s~G-dlr~al~~Lek 224 (585)
T PRK14950 200 EPGALEAIARAATG-SMRDAENLLQQ 224 (585)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 67778888888876 66666666554
No 163
>PRK08727 hypothetical protein; Validated
Probab=99.44 E-value=8.8e-12 Score=131.66 Aligned_cols=144 Identities=22% Similarity=0.308 Sum_probs=96.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCC
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~ 636 (837)
..++|+||+|||||+|++++|.++ |...+++++.++.. .+...+.... ...+|+|||++.+.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 459999999999999999998775 66777777655332 2223333332 357999999998864321
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecC-CCCCC---cHHHHHHH--HHhhhcCCCCHHHHHHHHHHHHhhc
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATN-RPFDL---DEAIIRRF--ERRIMVGLPSAENREMILKTLLAKE 710 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN-~~~~L---d~aL~rRF--~~~I~~~~P~~eer~~IL~~~l~~~ 710 (837)
... .+...++..... + ..+|+|+| .|..+ .+.+++|| ...+.++.|+.+++..|++..+...
T Consensus 111 --~~~-------~lf~l~n~~~~~-~--~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 111 --DEV-------ALFDFHNRARAA-G--ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred --HHH-------HHHHHHHHHHHc-C--CeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 111 122222222111 1 33455554 55544 78999998 4567889999999999999877665
Q ss_pred CC--ChhhHHHHHHHcCC
Q 003231 711 KV--EDLDFKELAAMTEG 726 (837)
Q Consensus 711 ~~--~d~dl~~LA~~t~G 726 (837)
++ ++..+..|+..+.|
T Consensus 179 ~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCCCHHHHHHHHHhCCC
Confidence 54 88888999998874
No 164
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.44 E-value=3.9e-12 Score=151.54 Aligned_cols=199 Identities=21% Similarity=0.300 Sum_probs=124.4
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
+.+...+|+. +|++|+|++.+...+...+.. ..+.+++|+||||||||++|+.++...
T Consensus 142 ~~~~~~~rp~---------~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 142 KSAQSLLRPR---------AFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred hHHhhhcCcC---------cHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3455556655 899999999998887665533 124579999999999999999998665
Q ss_pred ----------CCcEEEEecccccc-------ccccccHHH----HHHHHHH----------HHhcCCeEEEecccccccC
Q 003231 584 ----------GASFINVSMSTITS-------KWFGEDEKN----VRALFTL----------AAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 584 ----------g~~~i~v~~s~l~s-------~~~G~~e~~----l~~lf~~----------A~~~~psVLfIDEID~L~~ 632 (837)
+.+|+.++|..+.. .++|..... .+..+.. ......++|||||++.|-.
T Consensus 200 ~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~ 279 (615)
T TIGR02903 200 KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP 279 (615)
T ss_pred hhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH
Confidence 45789999876521 122221110 0011110 0122357999999998732
Q ss_pred CCCCcchHHHHHHHHHHHHHhhcccc------------------------ccCCceEEEE-EecCCCCCCcHHHHHHHHH
Q 003231 633 QRTRVGEHEAMRKIKNEFMTHWDGLL------------------------TRNGERILVL-AATNRPFDLDEAIIRRFER 687 (837)
Q Consensus 633 ~r~~~~~~~~~~~i~~~Ll~~ld~~~------------------------~~~~~~vlVI-aTTN~~~~Ld~aL~rRF~~ 687 (837)
.....++..++... ...+..+++| +||+.+..+++++++||.
T Consensus 280 ------------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~- 346 (615)
T TIGR02903 280 ------------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA- 346 (615)
T ss_pred ------------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-
Confidence 12222222222110 0012234554 456778899999999994
Q ss_pred hhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 688 RIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 688 ~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
.+.|+.++.+++..|++..+...++ ++..++.|+..+. .++...+++..+
T Consensus 347 ~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~ 398 (615)
T TIGR02903 347 EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADV 398 (615)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHH
Confidence 6788999999999999999887653 5555666666543 344444444333
No 165
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.43 E-value=7e-13 Score=152.14 Aligned_cols=199 Identities=21% Similarity=0.275 Sum_probs=150.9
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+-.++||. .|+|++|++.+...|..++... +-.++.||.||.|||||++||.+|+.++
T Consensus 5 ~L~rKyRP~---------~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalN 63 (515)
T COG2812 5 VLARKYRPK---------TFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALN 63 (515)
T ss_pred HHHHHhCcc---------cHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhc
Confidence 456677877 8999999999999999999762 5567899999999999999999999996
Q ss_pred CcE-------EEE-eccccccc-c---------ccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCcchHHH
Q 003231 585 ASF-------INV-SMSTITSK-W---------FGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRTRVGEHEA 642 (837)
Q Consensus 585 ~~~-------i~v-~~s~l~s~-~---------~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~~~~~~~~ 642 (837)
+.- ..+ .|..+... + -...-..++.+.+.+.- ..+.|.+|||+|.|.
T Consensus 64 C~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS----------- 132 (515)
T COG2812 64 CENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS----------- 132 (515)
T ss_pred CCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------
Confidence 541 111 11111110 0 01133446666666543 346799999999873
Q ss_pred HHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHH
Q 003231 643 MRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKEL 720 (837)
Q Consensus 643 ~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~L 720 (837)
....|.|+..++ .++..|.+|.+|..+..+++.+++|| .++.|...+.++....|..++.++++ ++..+..+
T Consensus 133 -~~afNALLKTLE----EPP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~i 206 (515)
T COG2812 133 -KQAFNALLKTLE----EPPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLI 206 (515)
T ss_pred -HHHHHHHhcccc----cCccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHH
Confidence 245667766554 45677999999999999999999999 78899999999999999999999988 77788889
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 003231 721 AAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 721 A~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
|+..+| +.+|...+...|...
T Consensus 207 a~~a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 207 ARAAEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred HHHcCC-ChhhHHHHHHHHHHc
Confidence 999987 667777776666554
No 166
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.42 E-value=5.4e-12 Score=141.12 Aligned_cols=170 Identities=21% Similarity=0.305 Sum_probs=117.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~ 632 (837)
+...++||||+|+|||+|+++++++. +..+++++...+...++-.....--.-|..-+ .-.+++||||+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45679999999999999999999888 34688888887776655443333334455555 557999999999876
Q ss_pred CCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC---CcHHHHHHHHH--hhhcCCCCHHHHHHHHHHHH
Q 003231 633 QRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD---LDEAIIRRFER--RIMVGLPSAENREMILKTLL 707 (837)
Q Consensus 633 ~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~---Ld~aL~rRF~~--~I~~~~P~~eer~~IL~~~l 707 (837)
+... ++..-.+.|.+. .. .+.+|+.+-..|.. +.|.+++||.. .+.+..|+.+.|..||+...
T Consensus 190 k~~~---qeefFh~FN~l~-------~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 190 KERT---QEEFFHTFNALL-------EN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred ChhH---HHHHHHHHHHHH-------hc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 4311 223333333332 22 22455555555654 45899999965 45788999999999999988
Q ss_pred hhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003231 708 AKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 708 ~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
...++ ++..+..+|..... +.++|..++......
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 77776 78888889988773 566666555444333
No 167
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.39 E-value=6.3e-12 Score=127.97 Aligned_cols=192 Identities=23% Similarity=0.308 Sum_probs=135.6
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|-++|||. .+.||+|.++..+.+.-+... ....+++|.||||||||+-+.++|+++
T Consensus 15 l~wVeKYrP~---------~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 15 LPWVEKYRPS---------VLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred chHHHhhCch---------HHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3489999988 688999999999999887765 345689999999999999999999998
Q ss_pred -C----CcEEEEeccccccccccccHHHHHHHHHHHHhcCC---eEEEecccccccCCCCCcchHHHHHHHHHHHHHhhc
Q 003231 584 -G----ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSP---TIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWD 655 (837)
Q Consensus 584 -g----~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~p---sVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld 655 (837)
| -.++++++++-.+ +.-....++.+-..--..+| .||++||+|++.. +.+.++++.+...
T Consensus 73 LG~~~ke~vLELNASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-----gAQQAlRRtMEiy----- 140 (333)
T KOG0991|consen 73 LGDSYKEAVLELNASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-----GAQQALRRTMEIY----- 140 (333)
T ss_pred hChhhhhHhhhccCccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-----HHHHHHHHHHHHH-----
Confidence 3 2456777776322 11122233222222122233 5999999999853 4556666666543
Q ss_pred cccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHH
Q 003231 656 GLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLK 733 (837)
Q Consensus 656 ~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~ 733 (837)
+ ....+..++|....+-+.+.+|| ..+.+...+..+...-+....+.+.+ .+..++.+.-..+|-....|.
T Consensus 141 ---S---~ttRFalaCN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalN 213 (333)
T KOG0991|consen 141 ---S---NTTRFALACNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALN 213 (333)
T ss_pred ---c---ccchhhhhhcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHH
Confidence 1 12466778899999999999999 77888888887777766666666655 677777777777775555555
Q ss_pred HHH
Q 003231 734 NLC 736 (837)
Q Consensus 734 ~L~ 736 (837)
+|-
T Consensus 214 nLQ 216 (333)
T KOG0991|consen 214 NLQ 216 (333)
T ss_pred HHH
Confidence 553
No 168
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.37 E-value=9.1e-12 Score=130.32 Aligned_cols=192 Identities=20% Similarity=0.342 Sum_probs=118.0
Q ss_pred Cccccccc-cc--hHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 003231 521 GVTFADIG-AL--NEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSM 592 (837)
Q Consensus 521 ~v~fddIi-G~--d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~ 592 (837)
..+|+..+ |- ..+...+..+...+ . .....++||||+|+|||+|.+++++++ +..++++++
T Consensus 4 ~~tFdnfv~g~~N~~a~~~~~~ia~~~----~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYAAAKAIAENP----G-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp T-SCCCS--TTTTHHHHHHHHHHHHST----T-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCccccCCcCCcHHHHHHHHHHHHhcC----C-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 45888864 53 23444444443321 1 234569999999999999999999875 678899998
Q ss_pred cccccccccccHH-HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEec
Q 003231 593 STITSKWFGEDEK-NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAAT 671 (837)
Q Consensus 593 s~l~s~~~G~~e~-~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTT 671 (837)
.++...+...... .+.. |..... ...+|+|||++.+.+.. .....|...++..... + +.+|+++.
T Consensus 73 ~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~~----------~~q~~lf~l~n~~~~~-~-k~li~ts~ 138 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGKQ----------RTQEELFHLFNRLIES-G-KQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTHH----------HHHHHHHHHHHHHHHT-T-SEEEEEES
T ss_pred HHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCch----------HHHHHHHHHHHHHHhh-C-CeEEEEeC
Confidence 8876654322211 1222 222222 45899999999985421 1223333333333322 2 24555555
Q ss_pred CCCC---CCcHHHHHHHHH--hhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 672 NRPF---DLDEAIIRRFER--RIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 672 N~~~---~Ld~aL~rRF~~--~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
..|. .+++.+++||.. .+.+..|+.+.|..|++..+...++ ++..+..|+....+ +.+.|..++..
T Consensus 139 ~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~ 211 (219)
T PF00308_consen 139 RPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNR 211 (219)
T ss_dssp S-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred CCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 5554 357899999965 6788999999999999999988876 78888899998874 66777666554
No 169
>PRK06620 hypothetical protein; Validated
Probab=99.37 E-value=3e-11 Score=125.96 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=107.4
Q ss_pred Cccccccccch---HHHHHHHHHHHcccCCchhhcCCCCCC-CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 521 GVTFADIGALN---EIKESLQELVMLPLRRPDLFKGGLLKP-CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 521 ~v~fddIiG~d---~vk~~L~~~i~~~l~~~e~~~~~~~~p-~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
..+|++++.-+ .+...++++...+ +..| .++++||||||||||+|++++|+..+..++. ....
T Consensus 12 ~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~- 78 (214)
T PRK06620 12 KYHPDEFIVSSSNDQAYNIIKNWQCGF----------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF- 78 (214)
T ss_pred CCCchhhEecccHHHHHHHHHHHHHcc----------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-
Confidence 45788855433 3455555443211 1123 2679999999999999999999988764432 1100
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 597 SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 597 s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
. ... .. ...+|+|||||.+ .......+.+.+ .. . .+.++|+++..|..
T Consensus 79 ------~----~~~----~~-~~d~lliDdi~~~--------~~~~lf~l~N~~-------~e-~-g~~ilits~~~p~~ 126 (214)
T PRK06620 79 ------N----EEI----LE-KYNAFIIEDIENW--------QEPALLHIFNII-------NE-K-QKYLLLTSSDKSRN 126 (214)
T ss_pred ------c----hhH----Hh-cCCEEEEeccccc--------hHHHHHHHHHHH-------Hh-c-CCEEEEEcCCCccc
Confidence 0 011 11 3379999999954 111222222222 11 2 23566666655533
Q ss_pred --CcHHHHHHHHH--hhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 677 --LDEAIIRRFER--RIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 677 --Ld~aL~rRF~~--~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
+ +.+++|+.. ++.+..|+.+++..+++..+...++ ++..++.|+.++.| +.+.+.+++.
T Consensus 127 l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~ 191 (214)
T PRK06620 127 FTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILE 191 (214)
T ss_pred cch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHH
Confidence 5 899999943 5789999999999999998876654 88889999998875 5555555544
No 170
>PRK05642 DNA replication initiation factor; Validated
Probab=99.36 E-value=3.2e-11 Score=127.51 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=104.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCC
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~ 635 (837)
...++|+||+|+|||+|++++|+++ +..++++++.++.... ..+.+.... ..+|+|||++.+.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH
Confidence 4679999999999999999999765 6788888887765421 122222222 36999999998754321
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC---CcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhc
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD---LDEAIIRRFE--RRIMVGLPSAENREMILKTLLAKE 710 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~---Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~ 710 (837)
....|...++.... ..+.+|++++..|.. ..+.+++||. ..+.+..|+.+++..+++..+...
T Consensus 115 ----------~~~~Lf~l~n~~~~--~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~ 182 (234)
T PRK05642 115 ----------WEEALFHLFNRLRD--SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR 182 (234)
T ss_pred ----------HHHHHHHHHHHHHh--cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 11223333333222 123566666655533 3689999995 455678999999999999666655
Q ss_pred CC--ChhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 711 KV--EDLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 711 ~~--~d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
++ ++..++.|+.+.++ +.+.+..++.
T Consensus 183 ~~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 183 GLHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 44 78888999998885 5566655543
No 171
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.35 E-value=9.9e-12 Score=133.57 Aligned_cols=135 Identities=21% Similarity=0.310 Sum_probs=92.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cccccccccHHHH-H-------------------HHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMST------ITSKWFGEDEKNV-R-------------------ALFT 612 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~------l~s~~~G~~e~~l-~-------------------~lf~ 612 (837)
..++||+||||||||++|+++|..+|.+++.++|.. +.+.+.+.....+ . ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 467999999999999999999999999999998764 2222322211111 1 1112
Q ss_pred HHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc------------cCCceEEEEEecCCC-----C
Q 003231 613 LAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT------------RNGERILVLAATNRP-----F 675 (837)
Q Consensus 613 ~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~------------~~~~~vlVIaTTN~~-----~ 675 (837)
.|.. .+.+|+||||+++.+ .+.+.|+..++.... .....+.||+|+|.. .
T Consensus 101 ~A~~-~g~~lllDEi~r~~~------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKP------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHH-cCCEEEEcchhhCCH------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 2222 347999999998632 334444444443210 012357899999975 3
Q ss_pred CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 003231 676 DLDEAIIRRFERRIMVGLPSAENREMILKTLL 707 (837)
Q Consensus 676 ~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l 707 (837)
.+++++++|| ..+.++.|+.++..+|++...
T Consensus 168 ~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 6789999999 788999999999999998764
No 172
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.34 E-value=5.1e-12 Score=139.55 Aligned_cols=161 Identities=21% Similarity=0.320 Sum_probs=102.9
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CC--cEEEEec
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-------GA--SFINVSM 592 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-------g~--~~i~v~~ 592 (837)
..|.+|+|++++++.+.-.+.. ....++||.||||||||++|+++|..+ +. .+..+.+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 5799999999999988755432 123689999999999999999999988 33 2221111
Q ss_pred c---------ccc---------------ccccccc--HHHH---HHHHHH--HHhcCCeEEEecccccccCCCCCcchHH
Q 003231 593 S---------TIT---------------SKWFGED--EKNV---RALFTL--AAKVSPTIIFVDEVDSMLGQRTRVGEHE 641 (837)
Q Consensus 593 s---------~l~---------------s~~~G~~--e~~l---~~lf~~--A~~~~psVLfIDEID~L~~~r~~~~~~~ 641 (837)
. .+. ...+|.. +..+ ...|.. ......++||||||+.+-+
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~--------- 142 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED--------- 142 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH---------
Confidence 0 000 0012210 0000 000110 0011236999999998732
Q ss_pred HHHHHHHHHHHhhccc---------cccCCceEEEEEecCCCC-CCcHHHHHHHHHhhhcCCCCH-HHHHHHHHHHH
Q 003231 642 AMRKIKNEFMTHWDGL---------LTRNGERILVLAATNRPF-DLDEAIIRRFERRIMVGLPSA-ENREMILKTLL 707 (837)
Q Consensus 642 ~~~~i~~~Ll~~ld~~---------~~~~~~~vlVIaTTN~~~-~Ld~aL~rRF~~~I~~~~P~~-eer~~IL~~~l 707 (837)
.+.+.++..|+.. ....+.++++++|+|..+ .+++++++||...+.++.|.. ++|.+|++...
T Consensus 143 ---~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 ---HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ---HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 4445555555432 222345789999999754 689999999998999988876 89999998754
No 173
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.30 E-value=2.1e-11 Score=116.14 Aligned_cols=139 Identities=40% Similarity=0.644 Sum_probs=91.3
Q ss_pred cchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHH
Q 003231 529 ALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEK 605 (837)
Q Consensus 529 G~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~~e~ 605 (837)
|.+.+.+.+...+.. ....+++++||||||||++++.++..+ +.+++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 556666676666543 245689999999999999999999998 8999999988765543222111
Q ss_pred H---HHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc--CCceEEEEEecCCCC--CCc
Q 003231 606 N---VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR--NGERILVLAATNRPF--DLD 678 (837)
Q Consensus 606 ~---l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~--~~~~vlVIaTTN~~~--~Ld 678 (837)
. ....+.......+.+|+|||++.+.. .....++..+...... ...++.+|+++|... .++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLSR------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhhH------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 1 11222334445679999999998721 1122333333332211 134578888888876 788
Q ss_pred HHHHHHHHHhhhcC
Q 003231 679 EAIIRRFERRIMVG 692 (837)
Q Consensus 679 ~aL~rRF~~~I~~~ 692 (837)
+.+.+||+.++.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999998666654
No 174
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.2e-10 Score=129.77 Aligned_cols=189 Identities=16% Similarity=0.103 Sum_probs=126.1
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEE-ec-
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS-------FINV-SM- 592 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~-------~i~v-~~- 592 (837)
..|++|+|++++++.+..++... +.++.+||+||+|+|||++|+.+|+.+.+. .... .|
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~ 87 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP 87 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC
Confidence 37889999999999999988752 456679999999999999999999998541 1100 11
Q ss_pred --c-----------ccc---ccc-c-------cccHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCcchHHHHH
Q 003231 593 --S-----------TIT---SKW-F-------GEDEKNVRALFTLAA----KVSPTIIFVDEVDSMLGQRTRVGEHEAMR 644 (837)
Q Consensus 593 --s-----------~l~---s~~-~-------G~~e~~l~~lf~~A~----~~~psVLfIDEID~L~~~r~~~~~~~~~~ 644 (837)
. ++. ... . .-....++.+..... .....|++|||+|.|..
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~------------ 155 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR------------ 155 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH------------
Confidence 0 110 000 0 001223444433332 23457999999999842
Q ss_pred HHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHc
Q 003231 645 KIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMT 724 (837)
Q Consensus 645 ~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t 724 (837)
...+.|+..++. ++.+.++|..|+.+..+.|.+++|| ..+.|+.|+.++...++........+++..+..++..+
T Consensus 156 ~aanaLLk~LEE----pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s 230 (351)
T PRK09112 156 NAANAILKTLEE----PPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRS 230 (351)
T ss_pred HHHHHHHHHHhc----CCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHc
Confidence 234556666654 2334566666777888999999999 79999999999999999875433334455677788888
Q ss_pred CCCCHHHHHHHHHHHH
Q 003231 725 EGYSGSDLKNLCVTAA 740 (837)
Q Consensus 725 ~G~sg~DL~~L~~~Aa 740 (837)
.|- ++...++.....
T Consensus 231 ~G~-pr~Al~ll~~~~ 245 (351)
T PRK09112 231 KGS-VRKALLLLNYGG 245 (351)
T ss_pred CCC-HHHHHHHHhcCc
Confidence 774 444445554443
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.7e-11 Score=142.00 Aligned_cols=181 Identities=23% Similarity=0.415 Sum_probs=137.8
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.+|-++|.++-++++.+.+.. +..++-+|.|+||+|||.++..+|... +..++.+++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 677799999988888887765 334567899999999999999999877 677889999
Q ss_pred ccccc--ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc-hHHHHHHHHHHHHHhhccccccCCceEEEEE
Q 003231 593 STITS--KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG-EHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669 (837)
Q Consensus 593 s~l~s--~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIa 669 (837)
..+.. +|-|+.+..++.+.+...+.++.||||||||.+.+.....+ ..++.+-+...| ..+ .+-+|+
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL---------ARG-eL~~IG 304 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL---------ARG-ELRCIG 304 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH---------hcC-CeEEEE
Confidence 88865 68999999999999999998899999999999998665433 233433333333 122 255555
Q ss_pred ecCC-----CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh----cCC--ChhhHHHHHHHcCCC
Q 003231 670 ATNR-----PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK----EKV--EDLDFKELAAMTEGY 727 (837)
Q Consensus 670 TTN~-----~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~----~~~--~d~dl~~LA~~t~G~ 727 (837)
+|.. ...-|++|-||| ..|.+..|+.++-..||+.+-.. +++ .|..+...+.++.-|
T Consensus 305 ATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 305 ATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred eccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 5532 345689999999 78899999999999999876544 333 666677666665543
No 176
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.27 E-value=9.7e-11 Score=120.29 Aligned_cols=186 Identities=23% Similarity=0.327 Sum_probs=135.7
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITS 597 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s 597 (837)
.+.+.+|+|.+.+++.|.+-- +.|-.+ .|.+++||+|..|||||+|+||+-.+. |..+|+|+..++..
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT-------~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~ 126 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNT-------EQFAEG--LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT 126 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHH-------HHHHcC--CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh
Confidence 478999999999999985433 334332 478899999999999999999998887 67899999877643
Q ss_pred ccccccHHHHHHHHHHHHhcC-CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 598 KWFGEDEKNVRALFTLAAKVS-PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 598 ~~~G~~e~~l~~lf~~A~~~~-psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
+-.+++..+..+ .-|||+||+-- . .+ ..-...|-..++|.....+.+|+|.+|+|+.+.
T Consensus 127 ---------Lp~l~~~Lr~~~~kFIlFcDDLSF--e----~g-----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHL 186 (287)
T COG2607 127 ---------LPDLVELLRARPEKFILFCDDLSF--E----EG-----DDAYKALKSALEGGVEGRPANVLFYATSNRRHL 186 (287)
T ss_pred ---------HHHHHHHHhcCCceEEEEecCCCC--C----CC-----chHHHHHHHHhcCCcccCCCeEEEEEecCCccc
Confidence 445666665543 57999999842 1 11 123345566788888888899999999999544
Q ss_pred Cc--------------H--------HHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhH--HH--HHHHcCCCC
Q 003231 677 LD--------------E--------AIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDF--KE--LAAMTEGYS 728 (837)
Q Consensus 677 Ld--------------~--------aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl--~~--LA~~t~G~s 728 (837)
++ + .+-+||...+.|..++.++-.+|++.++++.++ ++..+ ++ .|..-.|-|
T Consensus 187 l~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RS 266 (287)
T COG2607 187 LPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRS 266 (287)
T ss_pred ccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 42 1 233499999999999999999999999999887 33233 22 233445677
Q ss_pred HHHHHHH
Q 003231 729 GSDLKNL 735 (837)
Q Consensus 729 g~DL~~L 735 (837)
|+--...
T Consensus 267 GR~A~QF 273 (287)
T COG2607 267 GRVAWQF 273 (287)
T ss_pred cHhHHHH
Confidence 7644433
No 177
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.26 E-value=3.7e-11 Score=133.10 Aligned_cols=160 Identities=21% Similarity=0.319 Sum_probs=105.0
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecc-
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG-------ASFINVSMS- 593 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg-------~~~i~v~~s- 593 (837)
..|.+|+|++++|..|...+..| ...++||.||+|||||++||+++..+. .+|. ..+.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~ 79 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSD 79 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCC
Confidence 48999999999999988777552 346899999999999999999987762 2332 0000
Q ss_pred ------cccc---------------cc----ccccHHH------HHHHHHHHH---------hcCCeEEEecccccccCC
Q 003231 594 ------TITS---------------KW----FGEDEKN------VRALFTLAA---------KVSPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 594 ------~l~s---------------~~----~G~~e~~------l~~lf~~A~---------~~~psVLfIDEID~L~~~ 633 (837)
.+.. .+ .|.++.. +.+.|.... +...++||||||+.+.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~- 158 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD- 158 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH-
Confidence 0000 00 1112221 111111111 11247999999998843
Q ss_pred CCCcchHHHHHHHHHHHHHhhcc---------ccccCCceEEEEEecCCCC-CCcHHHHHHHHHhhhcCCCC-HHHHHHH
Q 003231 634 RTRVGEHEAMRKIKNEFMTHWDG---------LLTRNGERILVLAATNRPF-DLDEAIIRRFERRIMVGLPS-AENREMI 702 (837)
Q Consensus 634 r~~~~~~~~~~~i~~~Ll~~ld~---------~~~~~~~~vlVIaTTN~~~-~Ld~aL~rRF~~~I~~~~P~-~eer~~I 702 (837)
.+...|+..|+. .....+.++++|+|.|..+ .+.+++++||...+.+..|+ .+.+.+|
T Consensus 159 -----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 159 -----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred -----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHH
Confidence 333444444432 2222345789999888765 69999999999999999997 6999999
Q ss_pred HHHHH
Q 003231 703 LKTLL 707 (837)
Q Consensus 703 L~~~l 707 (837)
++...
T Consensus 228 l~~~~ 232 (350)
T CHL00081 228 VEQRT 232 (350)
T ss_pred HHhhh
Confidence 98754
No 178
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.6e-10 Score=127.51 Aligned_cols=172 Identities=17% Similarity=0.264 Sum_probs=120.4
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEeccc
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS--------FINVSMST 594 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~--------~i~v~~s~ 594 (837)
+|++|+|++.+++.+...+... +.++.+||+||+|+|||++|+++|+.+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 6899999999999999888542 456678999999999999999999987332 22332210
Q ss_pred cccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEe
Q 003231 595 ITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAA 670 (837)
Q Consensus 595 l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaT 670 (837)
+.. -.-..++.+.+.+... ...|++||++|.+.. ...|.|+..++. ++..+++|.+
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~------------~a~naLLK~LEe----pp~~t~~il~ 129 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE------------QAQNAFLKTIEE----PPKGVFIILL 129 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH------------HHHHHHHHHhcC----CCCCeEEEEE
Confidence 111 1223466666544332 356999999998832 334566666654 3344666666
Q ss_pred cCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCH
Q 003231 671 TNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 671 TN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg 729 (837)
|+.++.+.+.+++|+ ..+.|..|+.++....+...+. ..++..+..++..+.|-.+
T Consensus 130 ~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 130 CENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYN--DIKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred eCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhc--CCCHHHHHHHHHHcCCCHH
Confidence 678899999999999 6899999999988877765443 3455666777777776444
No 179
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.24 E-value=1.9e-10 Score=133.01 Aligned_cols=218 Identities=20% Similarity=0.281 Sum_probs=138.1
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcc----cC-------------CchhhcC----CCCCCCce
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLP----LR-------------RPDLFKG----GLLKPCRG 561 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~----l~-------------~~e~~~~----~~~~p~~~ 561 (837)
.+-|-.++++. .|.|+.|-+.+-..+..+++++ +. ..+++.. ....+.+-
T Consensus 258 ~kLWVdky~Pk---------~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKi 328 (877)
T KOG1969|consen 258 DKLWVDKYRPK---------KFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKI 328 (877)
T ss_pred cceeecccChh---------HHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccce
Confidence 34677777777 8999999999888888777651 11 1122211 11123345
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHH----HhcCCeEEEecccccccCCCCCc
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLA----AKVSPTIIFVDEVDSMLGQRTRV 637 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A----~~~~psVLfIDEID~L~~~r~~~ 637 (837)
+||+||||-||||||+.+|+++|+.+++|++++-.+.. .....+..+...- ....|.+|+|||||--.
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------ 400 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------ 400 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc------
Confidence 89999999999999999999999999999999843311 1112222222211 12468999999999432
Q ss_pred chHHHHHHHHHHHHH---hhccccccCC----------ceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHH
Q 003231 638 GEHEAMRKIKNEFMT---HWDGLLTRNG----------ERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMI 702 (837)
Q Consensus 638 ~~~~~~~~i~~~Ll~---~ld~~~~~~~----------~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~I 702 (837)
..+.+-++..+.. +..|-..... -.-.|||.||... .|+|+. -|..++.|..|......+-
T Consensus 401 --~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 401 --RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred --HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHH
Confidence 1222222222211 1111100000 1246899999864 466654 5778999999999999999
Q ss_pred HHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003231 703 LKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVR 745 (837)
Q Consensus 703 L~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~ 745 (837)
|+.++..+++ +...+..|++.++ .||++.++.-...+.+
T Consensus 477 L~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 477 LNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLASN 517 (877)
T ss_pred HHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHh
Confidence 9999988877 4445555555554 5888888776665554
No 180
>PRK09087 hypothetical protein; Validated
Probab=99.23 E-value=3.1e-10 Score=119.35 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=91.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcch
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGE 639 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~ 639 (837)
+.++|+||+|+|||+|++++|...+..++ +..++... ++..... .+|+|||++.+.. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~------~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSD-----------AANAAAE---GPVLIEDIDAGGF------D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchH-----------HHHhhhc---CeEEEECCCCCCC------C
Confidence 45999999999999999999988766544 32222111 1111111 5899999997621 1
Q ss_pred HHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC--C-CcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhcCC--
Q 003231 640 HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF--D-LDEAIIRRFE--RRIMVGLPSAENREMILKTLLAKEKV-- 712 (837)
Q Consensus 640 ~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~--~-Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~~~-- 712 (837)
.+....+++.+ .. . .+.+||+++..|. . ..+.+++||. ..+.+..|+.++|..|++..+...++
T Consensus 103 ~~~lf~l~n~~-------~~-~-g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSV-------RQ-A-GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHH-------Hh-C-CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 22222333332 21 1 2345565555443 2 3688999995 67788999999999999999987765
Q ss_pred ChhhHHHHHHHcCC
Q 003231 713 EDLDFKELAAMTEG 726 (837)
Q Consensus 713 ~d~dl~~LA~~t~G 726 (837)
++..++.|+.+..|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 78888999998873
No 181
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.23 E-value=1.1e-10 Score=139.86 Aligned_cols=159 Identities=21% Similarity=0.322 Sum_probs=107.3
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------------------
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA------------------- 583 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el------------------- 583 (837)
.|.+|+|++.++..+.-+...+ ...+|||.||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5788999999998886665432 23579999999999999999999887
Q ss_pred ----------------CCcEEEEeccccccccccccHHHHHHHHHH---------HHhcCCeEEEecccccccCCCCCcc
Q 003231 584 ----------------GASFINVSMSTITSKWFGEDEKNVRALFTL---------AAKVSPTIIFVDEVDSMLGQRTRVG 638 (837)
Q Consensus 584 ----------------g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~---------A~~~~psVLfIDEID~L~~~r~~~~ 638 (837)
..+|+.+.++......+|... +...+.. ......+|||||||+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------ 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------
Confidence 256777666544334444321 1111100 0011237999999998843
Q ss_pred hHHHHHHHHHHHHHhhccc---------cccCCceEEEEEecCCC-CCCcHHHHHHHHHhhhcCCCC-HHHHHHHHHHHH
Q 003231 639 EHEAMRKIKNEFMTHWDGL---------LTRNGERILVLAATNRP-FDLDEAIIRRFERRIMVGLPS-AENREMILKTLL 707 (837)
Q Consensus 639 ~~~~~~~i~~~Ll~~ld~~---------~~~~~~~vlVIaTTN~~-~~Ld~aL~rRF~~~I~~~~P~-~eer~~IL~~~l 707 (837)
.+.+.|+..|+.. ......++++|+|+|.. ..+.+++++||+..+.++.+. .+++.+|++..+
T Consensus 141 ------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 141 ------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred ------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 4455566655432 11122468999999964 468899999999888887764 677888887654
Q ss_pred h
Q 003231 708 A 708 (837)
Q Consensus 708 ~ 708 (837)
.
T Consensus 215 ~ 215 (633)
T TIGR02442 215 A 215 (633)
T ss_pred h
Confidence 3
No 182
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.23 E-value=9.8e-11 Score=127.93 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=95.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc--cccccHH----------HHHHHHHHHHhcCCeEEEecc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK--WFGEDEK----------NVRALFTLAAKVSPTIIFVDE 626 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~--~~G~~e~----------~l~~lf~~A~~~~psVLfIDE 626 (837)
.+++||.||||||||++|+.+|..++.+++++++...... ++|...- .....+..|.+ .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999998765544 4443211 01123334444 458899999
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHhhcc---c-------cccCCceEEEEEecCCCC------------CCcHHHHHH
Q 003231 627 VDSMLGQRTRVGEHEAMRKIKNEFMTHWDG---L-------LTRNGERILVLAATNRPF------------DLDEAIIRR 684 (837)
Q Consensus 627 ID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~---~-------~~~~~~~vlVIaTTN~~~------------~Ld~aL~rR 684 (837)
+|..-+ .+.+.|...++. + .......+.||||+|... .+++++++|
T Consensus 143 in~a~p------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDR 210 (327)
T TIGR01650 143 YDAGRP------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDR 210 (327)
T ss_pred hhccCH------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhh
Confidence 997733 222332222221 1 011234689999999843 568999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHh
Q 003231 685 FERRIMVGLPSAENREMILKTLLA 708 (837)
Q Consensus 685 F~~~I~~~~P~~eer~~IL~~~l~ 708 (837)
|-..+.+++|+.++-.+|+.....
T Consensus 211 F~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 211 WSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeeEeeCCCCCHHHHHHHHHhhcc
Confidence 966778999999999999876643
No 183
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.22 E-value=2e-10 Score=123.55 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=64.8
Q ss_pred EEEEecCC------------CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHH
Q 003231 666 LVLAATNR------------PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSD 731 (837)
Q Consensus 666 lVIaTTN~------------~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~D 731 (837)
+||++||+ |+-++..+++|+ .+|...+++.++..+|++.....+.+ ++..++.|+....--|-+.
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRY 400 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRY 400 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHH
Confidence 67777787 778899999999 78888899999999999999888776 8888999998877666666
Q ss_pred HHHHHHHHHHHHHHH
Q 003231 732 LKNLCVTAAYRPVRE 746 (837)
Q Consensus 732 L~~L~~~Aa~~av~r 746 (837)
--+|+.-|...|-++
T Consensus 401 a~qLL~pa~iiA~~r 415 (450)
T COG1224 401 AVQLLTPASIIAKRR 415 (450)
T ss_pred HHHhccHHHHHHHHh
Confidence 667766666666554
No 184
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=9.6e-11 Score=124.36 Aligned_cols=132 Identities=23% Similarity=0.373 Sum_probs=90.4
Q ss_pred cccchHHHHHHHHHHHcccCCchhh-cCCCC-CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLF-KGGLL-KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED 603 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~-~~~~~-~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s-~~~G~~ 603 (837)
++|++.+|+.|.-++...-++-... ....+ -...++||.||+|||||.||+.+|+.++.||..-++..|.. .|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 8999999998876664422211111 11111 12357999999999999999999999999999999998865 488887
Q ss_pred HHH-HHHHHHHH----HhcCCeEEEecccccccCCCCCcchH-H-HHHHHHHHHHHhhcccc
Q 003231 604 EKN-VRALFTLA----AKVSPTIIFVDEVDSMLGQRTRVGEH-E-AMRKIKNEFMTHWDGLL 658 (837)
Q Consensus 604 e~~-l~~lf~~A----~~~~psVLfIDEID~L~~~r~~~~~~-~-~~~~i~~~Ll~~ld~~~ 658 (837)
-.+ +..++..| .+...+||+|||||++..+..++.-. + ...-+.+.|+..++|..
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTv 204 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTV 204 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCce
Confidence 554 44454433 23346899999999998765443211 1 12356677888887653
No 185
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.21 E-value=1.1e-10 Score=129.13 Aligned_cols=158 Identities=21% Similarity=0.326 Sum_probs=101.4
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE-------
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-------GASFI------- 588 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-------g~~~i------- 588 (837)
.|..|+|++++|..|.-.+..| ...+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5788999999998886555432 25689999999999999999999877 22221
Q ss_pred --EEec-------------------ccccc-----ccccccHHHHHHHH-------H--HHHhcCCeEEEecccccccCC
Q 003231 589 --NVSM-------------------STITS-----KWFGEDEKNVRALF-------T--LAAKVSPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 589 --~v~~-------------------s~l~s-----~~~G~~e~~l~~lf-------~--~A~~~~psVLfIDEID~L~~~ 633 (837)
..+| .++.. ..+|... +...+ . ...+...++|||||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d--~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLD--IERALTEGVKAFEPGLLARANRGILYIDEVNLLED- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchh--HhhHhhcCCEEeecCcceeccCCEEEecChHhCCH-
Confidence 0000 01111 1222210 11100 0 00112247999999998732
Q ss_pred CCCcchHHHHHHHHHHHHHhhcc---------ccccCCceEEEEEecCCCC-CCcHHHHHHHHHhhhcCCCCH-HHHHHH
Q 003231 634 RTRVGEHEAMRKIKNEFMTHWDG---------LLTRNGERILVLAATNRPF-DLDEAIIRRFERRIMVGLPSA-ENREMI 702 (837)
Q Consensus 634 r~~~~~~~~~~~i~~~Ll~~ld~---------~~~~~~~~vlVIaTTN~~~-~Ld~aL~rRF~~~I~~~~P~~-eer~~I 702 (837)
.+.+.|+..|+. .....+.++++|+|+|..+ .+.+++++||...+.++.|.. ++|.+|
T Consensus 146 -----------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 146 -----------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred -----------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHH
Confidence 344444444432 2222335689999998754 799999999999999998875 889999
Q ss_pred HHHHH
Q 003231 703 LKTLL 707 (837)
Q Consensus 703 L~~~l 707 (837)
++...
T Consensus 215 L~~~~ 219 (337)
T TIGR02030 215 VERRT 219 (337)
T ss_pred HHhhh
Confidence 98743
No 186
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.18 E-value=1.7e-11 Score=125.38 Aligned_cols=145 Identities=26% Similarity=0.344 Sum_probs=68.4
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------------------
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG------------------ 584 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg------------------ 584 (837)
.|.||+|++.+|..+.-+... .+++||+||||||||++|+++...+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 478999999999999877754 36899999999999999999998761
Q ss_pred ----------CcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhh
Q 003231 585 ----------ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHW 654 (837)
Q Consensus 585 ----------~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~l 654 (837)
.||.....+.-....+|......-..+..| ..+||||||+..+- +.+++.|.+-+
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislA---h~GVLflDE~~ef~------------~~vld~Lr~pl 130 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLA---HRGVLFLDELNEFD------------RSVLDALRQPL 130 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGG---TTSEEEECETTTS-------------HHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHh---cCCEEEechhhhcC------------HHHHHHHHHHH
Confidence 111111111100111111110000011112 23899999998662 35666666666
Q ss_pred ccccc---------cCCceEEEEEecCC-----------------------CCCCcHHHHHHHHHhhhcCCCCHH
Q 003231 655 DGLLT---------RNGERILVLAATNR-----------------------PFDLDEAIIRRFERRIMVGLPSAE 697 (837)
Q Consensus 655 d~~~~---------~~~~~vlVIaTTN~-----------------------~~~Ld~aL~rRF~~~I~~~~P~~e 697 (837)
+.... .-+.++++|+|+|. ...+...+++|||..+.++..+.+
T Consensus 131 e~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 131 EDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp HHSBEEEEETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred HCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 54321 12246899999987 134567777888887777665544
No 187
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.18 E-value=7.8e-11 Score=118.55 Aligned_cols=115 Identities=24% Similarity=0.347 Sum_probs=79.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEeccccccccccccHHHHHHHHHH----HHhcCCeEEEecccc
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGA----SFINVSMSTITSKWFGEDEKNVRALFTL----AAKVSPTIIFVDEVD 628 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~----~~i~v~~s~l~s~~~G~~e~~l~~lf~~----A~~~~psVLfIDEID 628 (837)
+|..++||.||+|||||.+|+++|..+.. +++.++|+++.... .....+..++.. .......||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 36678999999999999999999999996 99999999987710 001111111111 111122599999999
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHhhccccccCC-------ceEEEEEecCCC
Q 003231 629 SMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNG-------ERILVLAATNRP 674 (837)
Q Consensus 629 ~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-------~~vlVIaTTN~~ 674 (837)
++++. .+.+.......+.+.|++.+++....+. .++++|+|+|--
T Consensus 79 Ka~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 79 KAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 99875 3334445556788899999886654322 368999999874
No 188
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.17 E-value=6.1e-10 Score=113.57 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=102.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGAS------------------------FINVSMSTITSKWFGEDEKNVRALFT 612 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~ 612 (837)
+.++.+||+||+|+|||++|+.+++.+... +..+.... .. .....++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHH
Confidence 456789999999999999999999987432 22221110 00 12345566666
Q ss_pred HHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHh
Q 003231 613 LAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERR 688 (837)
Q Consensus 613 ~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~ 688 (837)
.+... ...||+|||+|.+.. ...+.|+..++.. +...++|.+|+.+..+.+++++|+ ..
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~ 149 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QV 149 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EE
Confidence 65543 357999999998842 2345566666552 234566667777789999999999 68
Q ss_pred hhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCC
Q 003231 689 IMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGY 727 (837)
Q Consensus 689 I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~ 727 (837)
+.|+.|+.++...+++.. ++++..+..++..+.|.
T Consensus 150 ~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ----GISEEAAELLLALAGGS 184 (188)
T ss_pred eeCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHcCCC
Confidence 999999999998888775 46667788888887764
No 189
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=3.7e-10 Score=126.65 Aligned_cols=182 Identities=21% Similarity=0.220 Sum_probs=121.0
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-----------EEE-
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASF-----------INV- 590 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~-----------i~v- 590 (837)
+|++|+|++.+++.|..++... +.++.+||+||+|+||+++|.++|+.+-+.- ..+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~ 84 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA 84 (365)
T ss_pred chhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 7899999999999999988762 4567899999999999999999999883210 000
Q ss_pred ---ec-----------cccc--cc-ccc--------ccHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCcchHH
Q 003231 591 ---SM-----------STIT--SK-WFG--------EDEKNVRALFTLAA----KVSPTIIFVDEVDSMLGQRTRVGEHE 641 (837)
Q Consensus 591 ---~~-----------s~l~--s~-~~G--------~~e~~l~~lf~~A~----~~~psVLfIDEID~L~~~r~~~~~~~ 641 (837)
.| .++. .. +.+ -.-..++.+...+. ...+.|++|||+|.+..
T Consensus 85 ~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~--------- 155 (365)
T PRK07471 85 IDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA--------- 155 (365)
T ss_pred CCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH---------
Confidence 00 0100 00 000 01233555554433 23568999999998832
Q ss_pred HHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHH
Q 003231 642 AMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELA 721 (837)
Q Consensus 642 ~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA 721 (837)
...+.|+..++. +..+.++|.+|+.+..+.+.+++|+ ..+.|+.|+.++..+++...... ..+..+..++
T Consensus 156 ---~aanaLLK~LEe----pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~--~~~~~~~~l~ 225 (365)
T PRK07471 156 ---NAANALLKVLEE----PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD--LPDDPRAALA 225 (365)
T ss_pred ---HHHHHHHHHHhc----CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc--CCHHHHHHHH
Confidence 344566666553 2344677778888888999999999 78999999999998888765321 1333345677
Q ss_pred HHcCCCCHHHHHHHH
Q 003231 722 AMTEGYSGSDLKNLC 736 (837)
Q Consensus 722 ~~t~G~sg~DL~~L~ 736 (837)
..+.|-.+ ...+++
T Consensus 226 ~~s~Gsp~-~Al~ll 239 (365)
T PRK07471 226 ALAEGSVG-RALRLA 239 (365)
T ss_pred HHcCCCHH-HHHHHh
Confidence 77776444 444444
No 190
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=8.8e-10 Score=123.53 Aligned_cols=210 Identities=19% Similarity=0.270 Sum_probs=141.0
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----EEEEecccccccc--
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS-----FINVSMSTITSKW-- 599 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~-----~i~v~~s~l~s~~-- 599 (837)
+.+.++.++++...+.-.++. ..+.+++++||||||||.+++.+++++.-. +++|+|..+.+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 788899999988887653332 234469999999999999999999998433 8999998765442
Q ss_pred -------------cccc-HHHHHHHHHHHHh-cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCce
Q 003231 600 -------------FGED-EKNVRALFTLAAK-VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGER 664 (837)
Q Consensus 600 -------------~G~~-e~~l~~lf~~A~~-~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~ 664 (837)
.|.. ......+++.... ....||+|||+|.|..... .++-.|... ......+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~----~~~~~~~ 156 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRA----PGENKVK 156 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhh----cccccee
Confidence 1222 2223333443333 3456888999999976432 233333322 2223567
Q ss_pred EEEEEecCCC---CCCcHHHHHHH-HHhhhcCCCCHHHHHHHHHHHHhhc----CCChhhHHHHHHHcCCC--CHHHHHH
Q 003231 665 ILVLAATNRP---FDLDEAIIRRF-ERRIMVGLPSAENREMILKTLLAKE----KVEDLDFKELAAMTEGY--SGSDLKN 734 (837)
Q Consensus 665 vlVIaTTN~~---~~Ld~aL~rRF-~~~I~~~~P~~eer~~IL~~~l~~~----~~~d~dl~~LA~~t~G~--sg~DL~~ 734 (837)
+.+|+.+|.. ..+++.+.++| ...|.|++++.+|...|++...... .+++..++.+|....-. ..+---.
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aid 236 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAID 236 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHH
Confidence 8999999986 46788999877 3557999999999999998876542 22555566555544322 4455567
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHH
Q 003231 735 LCVTAAYRPVRELIQEERKKDMEK 758 (837)
Q Consensus 735 L~~~Aa~~av~r~~~~~~~~~~~~ 758 (837)
+|+.|+..|-++...........+
T Consensus 237 ilr~A~eiAe~~~~~~v~~~~v~~ 260 (366)
T COG1474 237 ILRRAGEIAEREGSRKVSEDHVRE 260 (366)
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHH
Confidence 889898888877665555444433
No 191
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.16 E-value=2.1e-10 Score=108.72 Aligned_cols=119 Identities=27% Similarity=0.402 Sum_probs=90.6
Q ss_pred eEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCcccc
Q 003231 112 ILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENK 191 (837)
Q Consensus 112 ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (837)
|||+||++++++.|||+||++++++++.+|...+...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~------------------------------------------ 38 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSY------------------------------------------ 38 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSS------------------------------------------
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccc------------------------------------------
Confidence 79999999999999999999999999999998875211
Q ss_pred ccccccCCccccccccccCCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCC-cEE
Q 003231 192 GTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETS-SVI 270 (837)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~-p~I 270 (837)
..+ ..+.+.+++....+.. |+|
T Consensus 39 ------------------------------------------------------~~~---~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 39 ------------------------------------------------------AGD---SEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp ------------------------------------------------------TTH---HHHHHHHHHHHHHHTSTSEE
T ss_pred ------------------------------------------------------ccc---ccccccccccccccccccee
Confidence 000 1223444444444446 999
Q ss_pred EEEccchhHhhhc--------HHHHHHHHHHHHhccC---CEEEEecccccCCCCCCchhHHHH-ccCCceeeeCC
Q 003231 271 LYLRDVDKLLFQS--------QRFYNLLDKLLKKLSG---SVLVLGSRMLEPEDDCRDVDERLT-ILFPYNLEVKL 334 (837)
Q Consensus 271 lfi~di~~~l~~~--------~~~~~~lk~~l~~l~g---~v~iiGs~~~~~~~~~~~~d~al~-rrF~~~IeI~~ 334 (837)
|||||+|.+.... .+..+.|-..+++... ++.+||+ ++....+|++|. .||..+|++++
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~t-----tn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIAT-----TNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEE-----ESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEe-----eCChhhCCHhHHhCCCcEEEEcCC
Confidence 9999999988665 3466666677777665 5999987 666889999999 99999998874
No 192
>PHA02244 ATPase-like protein
Probab=99.14 E-value=4e-10 Score=124.49 Aligned_cols=124 Identities=22% Similarity=0.223 Sum_probs=80.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc---ccHHHHHHHHHHHHhcCCeEEEecccccccCCCC
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFG---EDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G---~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~ 635 (837)
..++||+||||||||++|+++|..++.+|+.++...-.....| ........-|..+.+ ..++|||||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p--- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIP--- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCCH---
Confidence 4579999999999999999999999999999874210011111 111111112233333 458999999998743
Q ss_pred CcchHHHHHHHHHHHHHhhccc-------cccCCceEEEEEecCCC-----------CCCcHHHHHHHHHhhhcCCCCH
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGL-------LTRNGERILVLAATNRP-----------FDLDEAIIRRFERRIMVGLPSA 696 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~-------~~~~~~~vlVIaTTN~~-----------~~Ld~aL~rRF~~~I~~~~P~~ 696 (837)
.+...|...++.. ......++.+|+|+|.+ ..+++++++|| ..+.|++|+.
T Consensus 195 ---------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 195 ---------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred ---------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 2222222222211 11223468999999983 56799999999 6799999984
No 193
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=4.2e-10 Score=123.83 Aligned_cols=180 Identities=19% Similarity=0.265 Sum_probs=122.9
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS----------FINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~----------~i~v~~ 592 (837)
.|++|+|++.+++.+...+... +.++.+||+||+|+||+++|.++|+.+-+. +...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999998662 456789999999999999999999987321 111111
Q ss_pred cccc---------cc--------ccc--------ccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHH
Q 003231 593 STIT---------SK--------WFG--------EDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAM 643 (837)
Q Consensus 593 s~l~---------s~--------~~G--------~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~ 643 (837)
+++. ++ ..| -.-..++.+...+... ...|++||++|.|..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 1211 00 000 0112355665555432 357999999998842
Q ss_pred HHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003231 644 RKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAM 723 (837)
Q Consensus 644 ~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~ 723 (837)
...|.|+..++.. + +.++|.+|+.++.+-|.+++|+ ..+.|+.|+.++..++|......... +.+...++..
T Consensus 139 -~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~-~~~~~~l~~~ 210 (314)
T PRK07399 139 -AAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL-NINFPELLAL 210 (314)
T ss_pred -HHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc-hhHHHHHHHH
Confidence 3446677666553 2 3466777788899999999999 88999999999999999876433221 2335778888
Q ss_pred cCCCCHHHHH
Q 003231 724 TEGYSGSDLK 733 (837)
Q Consensus 724 t~G~sg~DL~ 733 (837)
+.|-.+.-+.
T Consensus 211 a~Gs~~~al~ 220 (314)
T PRK07399 211 AQGSPGAAIA 220 (314)
T ss_pred cCCCHHHHHH
Confidence 8875444333
No 194
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.12 E-value=6.7e-10 Score=125.66 Aligned_cols=142 Identities=20% Similarity=0.268 Sum_probs=89.1
Q ss_pred ccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecc---
Q 003231 524 FADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA--S-----FINVSMS--- 593 (837)
Q Consensus 524 fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~--~-----~i~v~~s--- 593 (837)
++++.+.++..+.+...+.. .++++|+||||||||++|+.+|..+.. . ++.++.+
T Consensus 174 l~d~~i~e~~le~l~~~L~~---------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI---------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc---------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 34567777777777665532 468999999999999999999998843 1 2222211
Q ss_pred -cccccc----cccc--HHHHHHHHHHHHhc--CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccc-------
Q 003231 594 -TITSKW----FGED--EKNVRALFTLAAKV--SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL------- 657 (837)
Q Consensus 594 -~l~s~~----~G~~--e~~l~~lf~~A~~~--~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~------- 657 (837)
+++..+ .|.. ...+..+...|... .|.+||||||++... .++..+++..++.-
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-----------~kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-----------SKVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-----------HHhhhhhhhhccccccccccc
Confidence 222111 1111 12234455566554 479999999997632 23344444444421
Q ss_pred -----------cccCCceEEEEEecCCCC----CCcHHHHHHHHHhhhcC
Q 003231 658 -----------LTRNGERILVLAATNRPF----DLDEAIIRRFERRIMVG 692 (837)
Q Consensus 658 -----------~~~~~~~vlVIaTTN~~~----~Ld~aL~rRF~~~I~~~ 692 (837)
.-..+.++.||||+|..+ .+|.|++||| ..|.+.
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~ 356 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIE 356 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEec
Confidence 012235799999999976 7999999999 455554
No 195
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4e-10 Score=120.49 Aligned_cols=69 Identities=32% Similarity=0.389 Sum_probs=53.4
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCC-CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGG-LLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI 595 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~-~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l 595 (837)
|+|++++|+.+.-++....++..+-... .--.|+++|..||+|+|||.+||.+|+-.++||+.|.++.+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 8999999999987776543333322211 11247899999999999999999999999999999887644
No 196
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.10 E-value=1.1e-09 Score=120.07 Aligned_cols=102 Identities=22% Similarity=0.192 Sum_probs=61.6
Q ss_pred CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC------------CCCCcHHHHHHHH
Q 003231 619 PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR------------PFDLDEAIIRRFE 686 (837)
Q Consensus 619 psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~------------~~~Ld~aL~rRF~ 686 (837)
|+||||||++.|-- .-+..|-..++.- -. -+||.+||+ |+-++..|++|+
T Consensus 279 pGVLFIDEvHmLDi------------EcFsfLnralEs~----~s-PiiIlATNRg~~~irGt~~~sphGiP~DlLDRl- 340 (398)
T PF06068_consen 279 PGVLFIDEVHMLDI------------ECFSFLNRALESE----LS-PIIILATNRGITKIRGTDIISPHGIPLDLLDRL- 340 (398)
T ss_dssp E-EEEEESGGGSBH------------HHHHHHHHHHTST----T---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-
T ss_pred cceEEecchhhccH------------HHHHHHHHHhcCC----CC-cEEEEecCceeeeccCccCcCCCCCCcchHhhc-
Confidence 78999999998721 1112222222221 11 366777775 577889999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 687 RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 687 ~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
.+|...+++.++..+|++..+..+++ ++..++.|+......+-+.--+|+..
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~ 394 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITP 394 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHH
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhh
Confidence 88889999999999999999998877 67777777776665555544444443
No 197
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.09 E-value=1.8e-10 Score=111.27 Aligned_cols=112 Identities=25% Similarity=0.409 Sum_probs=70.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc--cccccHH------HHHHHHHHHHhcCCeEEEecccccccC
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK--WFGEDEK------NVRALFTLAAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~--~~G~~e~------~l~~lf~~A~~~~psVLfIDEID~L~~ 632 (837)
+|||+||||||||++|+.+|..++.+++.+.++..... .+|.-.- .....+..+.. .++++|||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 58999999999999999999999999999988764321 1111000 00000001111 46899999999763
Q ss_pred CCCCcchHHHHHHHHHHHHHhhcccccc---------CCc------eEEEEEecCCCC----CCcHHHHHHH
Q 003231 633 QRTRVGEHEAMRKIKNEFMTHWDGLLTR---------NGE------RILVLAATNRPF----DLDEAIIRRF 685 (837)
Q Consensus 633 ~r~~~~~~~~~~~i~~~Ll~~ld~~~~~---------~~~------~vlVIaTTN~~~----~Ld~aL~rRF 685 (837)
..+...|+..++.-... ... ++.+|+|+|... .+++++++||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 24444444444432211 011 389999999988 8999999998
No 198
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.4e-10 Score=117.87 Aligned_cols=191 Identities=23% Similarity=0.274 Sum_probs=145.5
Q ss_pred ccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCe---
Q 003231 60 VLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESK--- 136 (837)
Q Consensus 60 vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~--- 136 (837)
++|+-+-+=-||+.=|= -+.|+-|++=|..-|+..+. +-..+|-+-+|=|||.|||+.+++.|.||||++.-.+
T Consensus 131 ~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~ 207 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTND 207 (423)
T ss_pred eccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecC
Confidence 77887766667777663 78899999999988887764 3456799999999999999999999999999988776
Q ss_pred ------EEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccC
Q 003231 137 ------LLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEG 210 (837)
Q Consensus 137 ------ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (837)
|+-+.++.+.
T Consensus 208 ~y~~~~liEinshsLF---------------------------------------------------------------- 223 (423)
T KOG0744|consen 208 RYYKGQLIEINSHSLF---------------------------------------------------------------- 223 (423)
T ss_pred ccccceEEEEehhHHH----------------------------------------------------------------
Confidence 1112222222
Q ss_pred CCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEE--EEccchhHhhhc-----
Q 003231 211 SSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVIL--YLRDVDKLLFQS----- 283 (837)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Il--fi~di~~~l~~~----- 283 (837)
+.|+.+.-.+|..+|+=+.++.+...+.+ .|||||.+=.-+
T Consensus 224 --------------------------------SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S 271 (423)
T KOG0744|consen 224 --------------------------------SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASS 271 (423)
T ss_pred --------------------------------HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhc
Confidence 44666666688889988888887766554 699999944211
Q ss_pred -------HHHHHHHHHHHHhcc--CCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHH
Q 003231 284 -------QRFYNLLDKLLKKLS--GSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKV 354 (837)
Q Consensus 284 -------~~~~~~lk~~l~~l~--g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~ 354 (837)
.+..|.+-..++++- .||+++.. .|=...+|.|+-.|---+.-|++|..+.++.|+|.-+++.+..
T Consensus 272 ~~EpsDaIRvVNalLTQlDrlK~~~NvliL~T-----SNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~ 346 (423)
T KOG0744|consen 272 RNEPSDAIRVVNALLTQLDRLKRYPNVLILAT-----SNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISS 346 (423)
T ss_pred CCCCchHHHHHHHHHHHHHHhccCCCEEEEec-----cchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhc
Confidence 345555555555443 38888864 4556779999999999999999999999999999999988863
No 199
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.07 E-value=3.1e-09 Score=111.20 Aligned_cols=186 Identities=20% Similarity=0.310 Sum_probs=132.2
Q ss_pred HHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-G 584 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-g 584 (837)
|..+++++ +|+.+.+.++....++.+... ....++++|||+|+||-|.+.++-+++ |
T Consensus 3 Wvdkyrpk---------sl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG 60 (351)
T KOG2035|consen 3 WVDKYRPK---------SLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYG 60 (351)
T ss_pred chhhcCcc---------hhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhC
Confidence 44566666 778899999888888776642 235689999999999999999999988 2
Q ss_pred --CcEEEEecccc-------------ccc--------cccc-cHHHHHHHHHHHHhcC---------CeEEEeccccccc
Q 003231 585 --ASFINVSMSTI-------------TSK--------WFGE-DEKNVRALFTLAAKVS---------PTIIFVDEVDSML 631 (837)
Q Consensus 585 --~~~i~v~~s~l-------------~s~--------~~G~-~e~~l~~lf~~A~~~~---------psVLfIDEID~L~ 631 (837)
.+=..+....+ .+. -.|. ..-.+..++....+.+ ..|++|-|+|.|.
T Consensus 61 ~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT 140 (351)
T KOG2035|consen 61 VGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT 140 (351)
T ss_pred CCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh
Confidence 22111211111 111 1222 2334556665554433 3699999999985
Q ss_pred CCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcC
Q 003231 632 GQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEK 711 (837)
Q Consensus 632 ~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~ 711 (837)
. ..+.++++.+.... .++.+|..+|....+-+++++|+ ..+.++.|+.++...++...+.+++
T Consensus 141 ~-----dAQ~aLRRTMEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 141 R-----DAQHALRRTMEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred H-----HHHHHHHHHHHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 3 24555666655442 23677888899999999999999 7889999999999999999999998
Q ss_pred C--ChhhHHHHHHHcCCCCHH
Q 003231 712 V--EDLDFKELAAMTEGYSGS 730 (837)
Q Consensus 712 ~--~d~dl~~LA~~t~G~sg~ 730 (837)
+ +..-+..+|+.++|--.+
T Consensus 204 l~lp~~~l~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 204 LQLPKELLKRIAEKSNRNLRR 224 (351)
T ss_pred ccCcHHHHHHHHHHhcccHHH
Confidence 7 777788888888764443
No 200
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.07 E-value=3e-10 Score=126.07 Aligned_cols=153 Identities=26% Similarity=0.423 Sum_probs=100.8
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc--cccccH
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK--WFGEDE 604 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~--~~G~~e 604 (837)
++|.++++..+...+.. .+++||.||||||||++|+++|..++.+|+++.|..-... .+|...
T Consensus 26 ~~g~~~~~~~~l~a~~~---------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLA---------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHc---------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 77888777777666543 4689999999999999999999999999999999754322 222211
Q ss_pred HHHH----HHHHHHHh-cCC---eEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcc-------cc-ccCCceEEEE
Q 003231 605 KNVR----ALFTLAAK-VSP---TIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDG-------LL-TRNGERILVL 668 (837)
Q Consensus 605 ~~l~----~lf~~A~~-~~p---sVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~-------~~-~~~~~~vlVI 668 (837)
-... ..|..... ... +|+|+|||++..+ .+.+.|+..|+. .. ..-+..++||
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~vi 158 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVI 158 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCH------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEE
Confidence 1110 00000000 001 4999999997643 444555555543 22 2223568999
Q ss_pred EecC-----CCCCCcHHHHHHHHHhhhcCCCC-HHHHHHHHHHH
Q 003231 669 AATN-----RPFDLDEAIIRRFERRIMVGLPS-AENREMILKTL 706 (837)
Q Consensus 669 aTTN-----~~~~Ld~aL~rRF~~~I~~~~P~-~eer~~IL~~~ 706 (837)
+|+| ....+++++++||...+.+++|+ ..+...++...
T Consensus 159 aT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 159 ATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred EccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhC
Confidence 9999 45678999999998889999994 44444444443
No 201
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.3e-09 Score=118.96 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=111.6
Q ss_pred ccccccc-chHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 003231 523 TFADIGA-LNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS--------------- 586 (837)
Q Consensus 523 ~fddIiG-~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~--------------- 586 (837)
.|+.|.| ++.+++.+...+... +.++.+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4777888 899999999888642 456778999999999999999999987321
Q ss_pred ---------EEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHh
Q 003231 587 ---------FINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTH 653 (837)
Q Consensus 587 ---------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ 653 (837)
+..+... +.. -.-..++.+.+.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~------------~a~NaLLK~ 133 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA------------SAANSLLKF 133 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH------------HHHHHHHHH
Confidence 2222111 000 112345555554432 2346999999998832 344667776
Q ss_pred hccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003231 654 WDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAM 723 (837)
Q Consensus 654 ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~ 723 (837)
++. ++..+++|.+|+.+..+.|.+++|+ ..+.|..|+.++...+++. .+++......++..
T Consensus 134 LEE----Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~----~gi~~~~~~~l~~~ 194 (329)
T PRK08058 134 LEE----PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE----EGISESLATLLAGL 194 (329)
T ss_pred hcC----CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH----cCCChHHHHHHHHH
Confidence 664 3445777778888889999999999 8899999999888766653 34543334344444
No 202
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.04 E-value=3.7e-09 Score=113.84 Aligned_cols=208 Identities=18% Similarity=0.214 Sum_probs=130.1
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---------GASFINVSMSTITS 597 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---------g~~~i~v~~s~l~s 597 (837)
-||+..+.+.+..+-.+ +.+|. .....++||+|++|.|||++++.++... .+|++.+.+..-.+
T Consensus 36 WIgY~~A~~~L~~L~~L-l~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEEL-LEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred eecCHHHHHHHHHHHHH-HhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 68888887777766654 44443 1334679999999999999999999876 25777777643221
Q ss_pred c--------------c-c-cccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccC
Q 003231 598 K--------------W-F-GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRN 661 (837)
Q Consensus 598 ~--------------~-~-G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 661 (837)
. + . .........+....+...+.+|+|||++.++.... ... .++++.+..+...-
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-----~~q----r~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-----RKQ----REFLNALKFLGNEL 179 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH-----HHH----HHHHHHHHHHhhcc
Confidence 1 1 0 11122233455666778889999999999764221 122 23333333332222
Q ss_pred CceEEEEEecCCC--CCCcHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHhhcCC---C---h-hhHHHHHHHcCCCCHHH
Q 003231 662 GERILVLAATNRP--FDLDEAIIRRFERRIMVGL-PSAENREMILKTLLAKEKV---E---D-LDFKELAAMTEGYSGSD 731 (837)
Q Consensus 662 ~~~vlVIaTTN~~--~~Ld~aL~rRF~~~I~~~~-P~~eer~~IL~~~l~~~~~---~---d-~dl~~LA~~t~G~sg~D 731 (837)
.-.++.++|-... -.-|+.+.+||. .+.++. ...++...++..+-...++ + + .-...|-.+++|..| +
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~ 257 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLASRFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-E 257 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHhccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-H
Confidence 3335555554332 344789999994 444443 2344556666666555443 2 2 223567778888776 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003231 732 LKNLCVTAAYRPVRELIQEER 752 (837)
Q Consensus 732 L~~L~~~Aa~~av~r~~~~~~ 752 (837)
|..++..||..|++...+.+.
T Consensus 258 l~~ll~~aA~~AI~sG~E~It 278 (302)
T PF05621_consen 258 LSRLLNAAAIAAIRSGEERIT 278 (302)
T ss_pred HHHHHHHHHHHHHhcCCceec
Confidence 999999999999997655443
No 203
>PRK04132 replication factor C small subunit; Provisional
Probab=99.03 E-value=2.9e-09 Score=129.29 Aligned_cols=159 Identities=19% Similarity=0.188 Sum_probs=120.9
Q ss_pred CCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcC------CeEEEe
Q 003231 558 PCRGILLFG--PPGTGKTMLAKAIANEA-----GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVS------PTIIFV 624 (837)
Q Consensus 558 p~~~iLL~G--PpGtGKT~LAralA~el-----g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~------psVLfI 624 (837)
|.-+-+..| |++.|||++|+++|+++ +.+++++++++..+ ...++.++..+.... ..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444567779 99999999999999998 56899999998432 234666655443222 369999
Q ss_pred cccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHH
Q 003231 625 DEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILK 704 (837)
Q Consensus 625 DEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~ 704 (837)
||+|.|.. ...+.|+..|+. ++.++.+|++||.+..+.+++++|| ..+.|+.|+.++...+++
T Consensus 637 DEaD~Lt~------------~AQnALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQ------------DAQQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCH------------HHHHHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 99999842 234556665554 2346889999999999999999999 889999999999999999
Q ss_pred HHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 705 TLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 705 ~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
.++.++++ ++..+..++..++|-. +..-++++.++
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~GDl-R~AIn~Lq~~~ 736 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEGDM-RRAINILQAAA 736 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 99887765 6888999999999844 44445555444
No 204
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.03 E-value=2.3e-09 Score=115.20 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=61.6
Q ss_pred CcEEEEEccchhHhhhc-----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHH
Q 003231 267 SSVILYLRDVDKLLFQS-----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHL 341 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~-----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl 341 (837)
.+.||||||+|.+..+. .+..+.+-..++...+++++|.+...++.+....++++|.+||+..|.++.++.+++.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 46799999999965322 2334444455566677888777655554455566789999999989999999999999
Q ss_pred HHHHHHHH
Q 003231 342 VNWKAKLE 349 (837)
Q Consensus 342 ~Ilk~~l~ 349 (837)
+||+..+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99997653
No 205
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.02 E-value=1.8e-09 Score=118.77 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=103.1
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------------------
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG--------------------- 584 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg--------------------- 584 (837)
+++|.+.+...+...+.... +.++.+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 57788888888777775311 2333699999999999999999999996
Q ss_pred ---CcEEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccc
Q 003231 585 ---ASFINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL 657 (837)
Q Consensus 585 ---~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~ 657 (837)
..++++++++....- -....++.+.+..... +.-|++|||+|.|.. ...+.++..+..
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc-
Confidence 467888887754321 1234455554444333 357999999999853 334555555443
Q ss_pred cccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHH
Q 003231 658 LTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMI 702 (837)
Q Consensus 658 ~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~I 702 (837)
+..+..+|.+||.+..+-+.+++|+ ..+.|+.|+.......
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHH
Confidence 4456899999999999999999999 7778877555444333
No 206
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.5e-09 Score=117.54 Aligned_cols=98 Identities=29% Similarity=0.531 Sum_probs=72.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccccc-HHHHHHHHHHH----HhcCCeEEEecccccccCC
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED-EKNVRALFTLA----AKVSPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s-~~~G~~-e~~l~~lf~~A----~~~~psVLfIDEID~L~~~ 633 (837)
.+|||.||+|+|||.||+.||+-++.||...+|..|.. .|+|+. +..+.+++..| .+.+.+|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 57999999999999999999999999999999999865 588886 55567776665 3445699999999999743
Q ss_pred CCCcchH-H-HHHHHHHHHHHhhccc
Q 003231 634 RTRVGEH-E-AMRKIKNEFMTHWDGL 657 (837)
Q Consensus 634 r~~~~~~-~-~~~~i~~~Ll~~ld~~ 657 (837)
..+.... + ...-+.+.|+..+++.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 3221111 0 1124566777777654
No 207
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.02 E-value=1.3e-09 Score=102.67 Aligned_cols=128 Identities=32% Similarity=0.468 Sum_probs=81.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccccc--------------cccccHHHHHHHHHHHHhcCCeE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGAS---FINVSMSTITSK--------------WFGEDEKNVRALFTLAAKVSPTI 621 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~---~i~v~~s~l~s~--------------~~G~~e~~l~~lf~~A~~~~psV 621 (837)
...++|+||||||||++++.+|..+... ++.++++..... ...........++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999765 888888765432 11234556678888888888899
Q ss_pred EEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC-CCCCcHHHHHHHHHhhhcCCC
Q 003231 622 IFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR-PFDLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 622 LfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~-~~~Ld~aL~rRF~~~I~~~~P 694 (837)
|||||++.+...... ............. .........+|+++|. ....+..+..|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE-----ALLLLLEELRLLL---LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH-----HHHHhhhhhHHHH---HHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999998643211 0000000000000 0112234688888886 344455566677777666543
No 208
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=6.3e-09 Score=115.22 Aligned_cols=151 Identities=20% Similarity=0.289 Sum_probs=105.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGAS------------------------FINVSMSTITSKWFGEDEKNVRALFT 612 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~ 612 (837)
+.++.+||+||+|+|||++|+++|+.+.+. ++.+...+- ++ .-.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 456789999999999999999999988442 222222100 00 012345666666
Q ss_pred HHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHh
Q 003231 613 LAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERR 688 (837)
Q Consensus 613 ~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~ 688 (837)
.+... ...|++||++|+|.. ...|.|+..++. ++.++++|.+|+.+..+.|.+++|+ ..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~------------~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR------------NAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQ 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH------------HHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-ee
Confidence 65543 357999999999842 445667766654 3456888899999999999999999 67
Q ss_pred hhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCH
Q 003231 689 IMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 689 I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg 729 (837)
+.|+.|+.++....+..... ...+.+...++..+.|-.+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALP--ESDERERIELLTLAGGSPL 198 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcc--cCChHHHHHHHHHcCCCHH
Confidence 99999999988887765431 1244555666777776444
No 209
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=5.6e-08 Score=104.36 Aligned_cols=192 Identities=17% Similarity=0.234 Sum_probs=116.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-cEEE--Eecccccc--------ccccc-----cH-HHHHHHH----HHHHhc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGA-SFIN--VSMSTITS--------KWFGE-----DE-KNVRALF----TLAAKV 617 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~-~~i~--v~~s~l~s--------~~~G~-----~e-~~l~~lf----~~A~~~ 617 (837)
...++|+||+|+|||++++.++..+.. .++. +....+.. ...|. .. ..+..+. ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 346899999999999999999998752 2221 11111100 01111 11 1112221 222345
Q ss_pred CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC--CCCC----cHHHHHHHHHhhhc
Q 003231 618 SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR--PFDL----DEAIIRRFERRIMV 691 (837)
Q Consensus 618 ~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~--~~~L----d~aL~rRF~~~I~~ 691 (837)
.+.+|+|||++.+.. .....+.. +-.........+.|+.+... ...+ ...+.+|+...+.+
T Consensus 123 ~~~vliiDe~~~l~~------------~~~~~l~~-l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l 189 (269)
T TIGR03015 123 KRALLVVDEAQNLTP------------ELLEELRM-LSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHL 189 (269)
T ss_pred CCeEEEEECcccCCH------------HHHHHHHH-HhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeC
Confidence 678999999998732 11122211 11111111222333333322 1111 12466687778889
Q ss_pred CCCCHHHHHHHHHHHHhhc------CCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHh
Q 003231 692 GLPSAENREMILKTLLAKE------KVEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAA 765 (837)
Q Consensus 692 ~~P~~eer~~IL~~~l~~~------~~~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~ 765 (837)
+..+.++...++...+... .+++..++.|++.+.|+.. .|..+|..|...|..+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~------------------- 249 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE------------------- 249 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc-------------------
Confidence 9999999999999887643 2467788999999999865 5999998888777653
Q ss_pred hcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhh
Q 003231 766 KSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVA 802 (837)
Q Consensus 766 ~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ 802 (837)
....|+.++++.|+.+++
T Consensus 250 -------------------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 -------------------EKREIGGEEVREVIAEID 267 (269)
T ss_pred -------------------CCCCCCHHHHHHHHHHhh
Confidence 124689999999988765
No 210
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.98 E-value=3.9e-09 Score=123.84 Aligned_cols=167 Identities=23% Similarity=0.250 Sum_probs=102.5
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEE---eccccccccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS-FINV---SMSTITSKWFGE 602 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~-~i~v---~~s~l~s~~~G~ 602 (837)
|.|++.+|..|.-.+..... +..-.+...+...++||+|+||||||++|+++++.+... |+.. ++..+....+..
T Consensus 205 i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 89999998888766644211 111112223344589999999999999999999987533 3221 222221111100
Q ss_pred c---HHHH-HHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccc---------cccCCceEEEEE
Q 003231 603 D---EKNV-RALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL---------LTRNGERILVLA 669 (837)
Q Consensus 603 ~---e~~l-~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~---------~~~~~~~vlVIa 669 (837)
. +..+ ...+. ....++++|||++.+-. .....|+..|+.. ...-+.++.|||
T Consensus 284 ~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~~------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 284 PETREFTLEGGALV---LADNGVCCIDEFDKMDD------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred cCcceEEecCccEE---ecCCCEEEEechhhCCH------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 0 0000 00111 12347999999998843 2233344444322 122235689999
Q ss_pred ecCCCC-------------CCcHHHHHHHHHhh-hcCCCCHHHHHHHHHHHHhh
Q 003231 670 ATNRPF-------------DLDEAIIRRFERRI-MVGLPSAENREMILKTLLAK 709 (837)
Q Consensus 670 TTN~~~-------------~Ld~aL~rRF~~~I-~~~~P~~eer~~IL~~~l~~ 709 (837)
|+|+.. .|++++++|||..+ ..+.|+.+...+|+++++..
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 999752 68999999998765 45889999999999987654
No 211
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.98 E-value=4.9e-09 Score=116.35 Aligned_cols=189 Identities=16% Similarity=0.228 Sum_probs=109.0
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK----- 598 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~----- 598 (837)
|+|.....+.+.+.+.... ....+|||+|++||||+++|++|.... +.||+.++|..+...
T Consensus 1 liG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 3566666666666655421 234679999999999999999998766 479999999876432
Q ss_pred cccccHHH-------HHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------cCCce
Q 003231 599 WFGEDEKN-------VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-------RNGER 664 (837)
Q Consensus 599 ~~G~~e~~-------l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~~ 664 (837)
.+|..... ....|+.| ..++||||||+.|.. .+...|+..++.... ....+
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL------------LVQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred HhccccccccCcccccCCchhhC---CCCEEEeCChHhCCH------------HHHHHHHHHHHcCcEEecCCCceeccc
Confidence 22221110 11123333 358999999998843 333444444433211 11235
Q ss_pred EEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHH----HHHHHHHHhhc----C------CChhhHHHHHHH
Q 003231 665 ILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENR----EMILKTLLAKE----K------VEDLDFKELAAM 723 (837)
Q Consensus 665 vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer----~~IL~~~l~~~----~------~~d~dl~~LA~~ 723 (837)
+.||++|+.. ..+.+.+..||. .+.+..|...+| ..+++.++... + +++..+..|...
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 7888888763 345677778883 345555655554 34445544321 1 233333333332
Q ss_pred c-CCCCHHHHHHHHHHHHHHH
Q 003231 724 T-EGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 724 t-~G~sg~DL~~L~~~Aa~~a 743 (837)
. +| +-++|++++..|+..+
T Consensus 214 ~WPG-NvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 214 HWPG-NVRELKNVVERSVYRH 233 (329)
T ss_pred CCCc-hHHHHHHHHHHHHHhC
Confidence 2 22 3467777776666543
No 212
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=5e-09 Score=124.30 Aligned_cols=201 Identities=16% Similarity=0.241 Sum_probs=121.7
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...|.++++|. ++++++|+++.++.|..++... ..+ ..+...++|+||||||||++++.+|.+
T Consensus 71 ~~pW~eKyrP~---------~ldel~~~~~ki~~l~~~l~~~-~~~-------~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 71 NEPWVEKYKPE---------TQHELAVHKKKIEEVETWLKAQ-VLE-------NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred cCchHHHhCCC---------CHHHhcCcHHHHHHHHHHHHhc-ccc-------cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35699999988 8999999999999998887652 111 134456999999999999999999999
Q ss_pred hCCcEEE-Eecc---ccccc------------cccccHHHHHHHHHHHHh----------cCCeEEEecccccccCCCCC
Q 003231 583 AGASFIN-VSMS---TITSK------------WFGEDEKNVRALFTLAAK----------VSPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 583 lg~~~i~-v~~s---~l~s~------------~~G~~e~~l~~lf~~A~~----------~~psVLfIDEID~L~~~r~~ 636 (837)
++..+++ ++.. ..... .+......++.++..+.. ....|||||||+.++.. .
T Consensus 134 l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~- 211 (637)
T TIGR00602 134 LGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D- 211 (637)
T ss_pred hhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-
Confidence 9876544 2211 10000 011223334445554432 24579999999987531 1
Q ss_pred cchHHHHHHHHHHHHH-hhccccccCCceEEEEEecCCCC----------C----CcHHHHH--HHHHhhhcCCCCHHHH
Q 003231 637 VGEHEAMRKIKNEFMT-HWDGLLTRNGERILVLAATNRPF----------D----LDEAIIR--RFERRIMVGLPSAENR 699 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~-~ld~~~~~~~~~vlVIaTTN~~~----------~----Ld~aL~r--RF~~~I~~~~P~~eer 699 (837)
.. .++.++. ... ..+.-.+|+++|..+. . +.+++++ |. .+|.|++.+....
T Consensus 212 ---~~----~lq~lLr~~~~----e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l 279 (637)
T TIGR00602 212 ---TR----ALHEILRWKYV----SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIM 279 (637)
T ss_pred ---HH----HHHHHHHHHhh----cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHH
Confidence 11 2222222 111 1122123333332221 1 4478886 55 5789999999998
Q ss_pred HHHHHHHHhhcCC---------ChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 700 EMILKTLLAKEKV---------EDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 700 ~~IL~~~l~~~~~---------~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
.+.|+.++..+.. ....+..|+....| |++.++..
T Consensus 280 ~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~ 323 (637)
T TIGR00602 280 KKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINS 323 (637)
T ss_pred HHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHH
Confidence 8888888876532 12456666665544 66555443
No 213
>CHL00181 cbbX CbbX; Provisional
Probab=98.97 E-value=2.3e-09 Score=116.70 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=64.3
Q ss_pred CcEEEEEccchhHhhh------cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHH
Q 003231 267 SSVILYLRDVDKLLFQ------SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETH 340 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~------~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~r 340 (837)
.+-||||||+|.+... ..+..+.|-..++...++++||+++..+.-......+++|.+||+++|++++++.++.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 4579999999995432 2445566666677667789999885443323334557899999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003231 341 LVNWKAKLEED 351 (837)
Q Consensus 341 l~Ilk~~l~~d 351 (837)
.+||+.++.+.
T Consensus 202 ~~I~~~~l~~~ 212 (287)
T CHL00181 202 LQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 214
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.96 E-value=1.3e-08 Score=121.22 Aligned_cols=135 Identities=17% Similarity=0.292 Sum_probs=91.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccccccccccHHHHHHHHHH---------HHhcCCeEEEeccc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGA--SFINVSMSTITSKWFGEDEKNVRALFTL---------AAKVSPTIIFVDEV 627 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~--~~i~v~~s~l~s~~~G~~e~~l~~lf~~---------A~~~~psVLfIDEI 627 (837)
..+|||.|+||||||++|++++..++. +|+.+.........+|... +...+.. ..+...++||||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 578999999999999999999998753 6888886433334444421 1110000 00122379999999
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHhhcccc---------ccCCceEEEEEecCCCC---CCcHHHHHHHHHhhhcC-CC
Q 003231 628 DSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL---------TRNGERILVLAATNRPF---DLDEAIIRRFERRIMVG-LP 694 (837)
Q Consensus 628 D~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~---------~~~~~~vlVIaTTN~~~---~Ld~aL~rRF~~~I~~~-~P 694 (837)
+.+-+ .+.+.|+..|+... .....++.||+|+|... .+.+++++||...+.+. .|
T Consensus 94 ~rl~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~ 161 (589)
T TIGR02031 94 NLLDD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVA 161 (589)
T ss_pred hhCCH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCC
Confidence 98843 44455555554321 11224689999999865 79999999998877664 45
Q ss_pred CHHHHHHHHHHHH
Q 003231 695 SAENREMILKTLL 707 (837)
Q Consensus 695 ~~eer~~IL~~~l 707 (837)
+.++|.+|++..+
T Consensus 162 ~~~er~eil~~~~ 174 (589)
T TIGR02031 162 SQDLRVEIVRRER 174 (589)
T ss_pred CHHHHHHHHHHHH
Confidence 7788999998866
No 215
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.96 E-value=2.9e-09 Score=125.90 Aligned_cols=194 Identities=20% Similarity=0.270 Sum_probs=120.5
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK 598 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~ 598 (837)
.+|++++|.....+.+.+.+.... ....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 368889999999888888776521 234679999999999999999999875 579999999887432
Q ss_pred -----cccccHHHH-------HHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc------
Q 003231 599 -----WFGEDEKNV-------RALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR------ 660 (837)
Q Consensus 599 -----~~G~~e~~l-------~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~------ 660 (837)
.+|...... ...+..+ ..++||||||+.|.. .+...|+..++.....
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~------------~~Q~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISP------------AFQAKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCH------------HHHHHHHHHHhcCcEEECCCCc
Confidence 122211100 0112222 358999999999843 3334445444432111
Q ss_pred -CCceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCH----HHHHHHHHHHHhhcC--------CChhhHHHH
Q 003231 661 -NGERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSA----ENREMILKTLLAKEK--------VEDLDFKEL 720 (837)
Q Consensus 661 -~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~----eer~~IL~~~l~~~~--------~~d~dl~~L 720 (837)
...++.+|+||+.. ..+.+.+..|+. .+.+..|.. ++...++++++.... +++..+..|
T Consensus 327 ~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 327 TLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred eEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 01247888888763 356677777883 344444544 344455666655321 244445555
Q ss_pred HHHc-CCCCHHHHHHHHHHHHHHH
Q 003231 721 AAMT-EGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 721 A~~t-~G~sg~DL~~L~~~Aa~~a 743 (837)
.... +| +-++|++++..|+..+
T Consensus 406 ~~~~WPG-NvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 406 MSCKWPG-NVRELENCLERTATLS 428 (534)
T ss_pred HhCCCCC-hHHHHHHHHHHHHHhC
Confidence 5442 32 4578888888776643
No 216
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.93 E-value=3.9e-09 Score=120.43 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=92.7
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecc-cccccccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA--SFINVSMS-TITSKWFGED 603 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~--~~i~v~~s-~l~s~~~G~~ 603 (837)
|+|.+++++.+..++. ...++||.||||||||++|++++..++. +|..+.+. ......+|..
T Consensus 22 i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 22 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred ccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 8999999998877663 3468999999999999999999998743 44443332 1122333421
Q ss_pred -HHHH--HHHHHHHHhc---CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc-------CCceEEEEEe
Q 003231 604 -EKNV--RALFTLAAKV---SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR-------NGERILVLAA 670 (837)
Q Consensus 604 -e~~l--~~lf~~A~~~---~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~-------~~~~vlVIaT 670 (837)
-... ..-|...... ...+||+|||.++.+ .+.+.|+..|..-... -+.+++ ++|
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp------------~~QsaLLeam~Er~~t~g~~~~~lp~rfi-v~A 153 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP------------AILNTLLTAINERRFRNGAHEEKIPMRLL-VTA 153 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCH------------HHHHHHHHHHHhCeEecCCeEEeCCCcEE-EEE
Confidence 0000 1112211111 234999999987643 5666677666332211 112344 444
Q ss_pred cCCCC---CCcHHHHHHHHHhhhcCCCC-HHHHHHHHHH
Q 003231 671 TNRPF---DLDEAIIRRFERRIMVGLPS-AENREMILKT 705 (837)
Q Consensus 671 TN~~~---~Ld~aL~rRF~~~I~~~~P~-~eer~~IL~~ 705 (837)
||... ...+++..||-..+.+++|+ .++...|+..
T Consensus 154 TN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 154 SNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred CCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 47432 24469999998888999997 4565777765
No 217
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.92 E-value=2.2e-08 Score=119.42 Aligned_cols=49 Identities=33% Similarity=0.446 Sum_probs=42.4
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS 586 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~ 586 (837)
-|++++|++++++.+..++.. ..+++|+||||||||++|+++|..++..
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 577899999999999888854 2489999999999999999999998644
No 218
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.92 E-value=4.1e-09 Score=122.47 Aligned_cols=145 Identities=23% Similarity=0.305 Sum_probs=90.8
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------------------
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG------------------ 584 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg------------------ 584 (837)
.|++|.|+..+++.+...+ ....+++|.||||||||++++.++..+.
T Consensus 190 d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 7899999999987765544 2346899999999999999999987441
Q ss_pred ----------CcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhh
Q 003231 585 ----------ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHW 654 (837)
Q Consensus 585 ----------~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~l 654 (837)
.||...+++......+|.........+..| ..++|||||++.+.. .+...|+..|
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~~------------~~~~~L~~~L 319 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFKR------------SVLDALREPI 319 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCCH------------HHHHHHHHHH
Confidence 122222222211112222111111123333 338999999998732 3444455544
Q ss_pred cccc---------ccCCceEEEEEecCCC------C-----------------CCcHHHHHHHHHhhhcCCCCHH
Q 003231 655 DGLL---------TRNGERILVLAATNRP------F-----------------DLDEAIIRRFERRIMVGLPSAE 697 (837)
Q Consensus 655 d~~~---------~~~~~~vlVIaTTN~~------~-----------------~Ld~aL~rRF~~~I~~~~P~~e 697 (837)
+... .....++.+|+++|.- . .+...+++|||..+.++.++.+
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 4321 1112468999999862 1 4788899999998888877654
No 219
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.90 E-value=2.6e-09 Score=121.38 Aligned_cols=193 Identities=25% Similarity=0.331 Sum_probs=118.6
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITS 597 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s 597 (837)
..+|++|+|.......+.+.+... .+...+|||.|.+||||..+|++|.+.. +.|||.+||..+..
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 458999999999988888877652 2456789999999999999999998877 68999999987643
Q ss_pred c-----cccccHH--------HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhc-------cc
Q 003231 598 K-----WFGEDEK--------NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWD-------GL 657 (837)
Q Consensus 598 ~-----~~G~~e~--------~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld-------~~ 657 (837)
. .||...+ .-..+|+.|.. +.||||||..|.- .+...|+..+. |.
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl------------~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL------------PLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH------------HHHHHHHHHHhhceEEecCC
Confidence 3 3444322 12345555544 8999999998732 22233333332 11
Q ss_pred cccCCceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHH----HHHHHHHhhc----C-----CChhhH
Q 003231 658 LTRNGERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENRE----MILKTLLAKE----K-----VEDLDF 717 (837)
Q Consensus 658 ~~~~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~----~IL~~~l~~~----~-----~~d~dl 717 (837)
.....-.|.||+|||+. ..+...|.-|+ .++.+..|...+|. .+..+++.+. + +++..+
T Consensus 375 t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~ 453 (560)
T COG3829 375 TKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDAL 453 (560)
T ss_pred CCceeeEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHH
Confidence 12223469999999984 12222333355 45566667655553 3444455431 1 122333
Q ss_pred HHHHHH-cCCCCHHHHHHHHHHHHH
Q 003231 718 KELAAM-TEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 718 ~~LA~~-t~G~sg~DL~~L~~~Aa~ 741 (837)
..|... .+| +-++|+|++.+|..
T Consensus 454 ~~L~~y~WPG-NVRELeNviER~v~ 477 (560)
T COG3829 454 ALLLRYDWPG-NVRELENVIERAVN 477 (560)
T ss_pred HHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 333221 233 33677777766664
No 220
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8.2e-09 Score=112.63 Aligned_cols=137 Identities=18% Similarity=0.259 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHH------HHHHHHHHHHhc---cCCE-EEEecccccCCCCCCchhHH
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQSQR------FYNLLDKLLKKL---SGSV-LVLGSRMLEPEDDCRDVDER 321 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~------~~~~lk~~l~~l---~g~v-~iiGs~~~~~~~~~~~~d~a 321 (837)
.|..||.-+.+- ..-++|||||.|-||+.++. --..|..+|=+- +-.| +++. +|++-+.|.|
T Consensus 430 kiH~lFDWakkS--~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlA------tNrpgdlDsA 501 (630)
T KOG0742|consen 430 KIHKLFDWAKKS--RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLA------TNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHhhc--ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEec------cCCccchhHH
Confidence 455566655542 34699999999999988731 222333444331 2234 4553 8999999999
Q ss_pred HHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhccc---chhHHHH-----HhhcC---CCChhHHhhcccCCCCCCh
Q 003231 322 LTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQD---NKNHIAE-----VLAAN---DLECDDLGSICQADTMVLS 390 (837)
Q Consensus 322 l~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~---n~~~i~~-----vl~~~---~~~~~dL~~~~~~d~~l~~ 390 (837)
++.||--.|++++|-+|+|.++|+.+|++|..+-.... .+.++-+ ..... +--|.+-+..+.. |||
T Consensus 502 V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeG---fSG 578 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEG---FSG 578 (630)
T ss_pred HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccC---CcH
Confidence 99999999999999999999999999999985422221 1122211 11111 1357777777788 999
Q ss_pred hhHHHHHHH
Q 003231 391 NYIEEIVVS 399 (837)
Q Consensus 391 ~~Ie~iv~~ 399 (837)
-+|-.+|.+
T Consensus 579 REiakLva~ 587 (630)
T KOG0742|consen 579 REIAKLVAS 587 (630)
T ss_pred HHHHHHHHH
Confidence 999998754
No 221
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.90 E-value=9.9e-09 Score=113.87 Aligned_cols=158 Identities=17% Similarity=0.228 Sum_probs=100.5
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK- 598 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~- 598 (837)
.|++++|.....+.+.+.+.... ....+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 46779999988888888776521 234679999999999999999998765 479999999986422
Q ss_pred ----cccccHHH-------HHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-c------
Q 003231 599 ----WFGEDEKN-------VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-R------ 660 (837)
Q Consensus 599 ----~~G~~e~~-------l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-~------ 660 (837)
++|..... ....+..+ ..++||||||+.|.. .+...|+..++.... .
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~------------~~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM------------LVQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCH------------HHHHHHHHHHhcCcEEeCCCCce
Confidence 23322110 01123322 358999999999843 333444444433211 1
Q ss_pred CCceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHH----HHHHHHH
Q 003231 661 NGERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENRE----MILKTLL 707 (837)
Q Consensus 661 ~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~----~IL~~~l 707 (837)
...++.||+||+.. ..+.+.+..|| ..+.+..|...+|. .++++++
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl 194 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFA 194 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHH
Confidence 11247888888763 35667788888 34455566665553 3444444
No 222
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.88 E-value=1.6e-08 Score=118.42 Aligned_cols=192 Identities=21% Similarity=0.292 Sum_probs=117.1
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEEEe
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE-----------AGASFINVS 591 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e-----------lg~~~i~v~ 591 (837)
+|++|+|.....+.+.+.+...- ....+|||+|++||||+++|++|... .+.||+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 68899999999988888876521 23468999999999999999999887 367999999
Q ss_pred ccccccc-----cccccHHH--------HHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc
Q 003231 592 MSTITSK-----WFGEDEKN--------VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL 658 (837)
Q Consensus 592 ~s~l~s~-----~~G~~e~~--------l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~ 658 (837)
|..+... .+|..+.. -..+|+.|. .+.||||||+.|.. .+...|+..++...
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~------------~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPL------------PLQTRLLRVLEEKE 350 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCH------------HHHHHHHhhhhcCe
Confidence 9887433 33432211 112444443 48999999999843 33344444443321
Q ss_pred c-------cCCceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHH----HHHHHHHhh----cC--CCh
Q 003231 659 T-------RNGERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENRE----MILKTLLAK----EK--VED 714 (837)
Q Consensus 659 ~-------~~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~----~IL~~~l~~----~~--~~d 714 (837)
. ...-++.||++||.. ..+.+.+..|+ ..+.+..|...+|. .+++.++.+ .+ ++.
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 429 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSA 429 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 1 111246888888764 12334455566 44566667666654 445555554 22 122
Q ss_pred hhHH-------HHHHH-cCCCCHHHHHHHHHHHHHH
Q 003231 715 LDFK-------ELAAM-TEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 715 ~dl~-------~LA~~-t~G~sg~DL~~L~~~Aa~~ 742 (837)
..+. .|... .+| +-++|++++.+++..
T Consensus 430 ~a~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i~ 464 (538)
T PRK15424 430 ALRQGLQQCETLLLHYDWPG-NVRELRNLMERLALF 464 (538)
T ss_pred HHHHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHh
Confidence 1111 11111 222 347888888877763
No 223
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.88 E-value=6.4e-08 Score=108.64 Aligned_cols=84 Identities=15% Similarity=0.352 Sum_probs=67.1
Q ss_pred CChHHHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHH
Q 003231 47 VSGEQIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLA 126 (837)
Q Consensus 47 ~~~~~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~La 126 (837)
+|+.++.++|.+.||=- ++.|..|.-|+|.|.+...+..-.+. ...+++|||.||+++++++||
T Consensus 1 ltP~~I~~~Ld~~IiGQ---------------~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQ---------------DNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTGVGKTEIA 64 (441)
T ss_pred CCHHHHHHHHhhhccCH---------------HHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCCCCHHHHH
Confidence 35667777777666543 78999999999999777655332222 234589999999999999999
Q ss_pred HHHhhhhCCeEEEeeccccc
Q 003231 127 KALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 127 kALA~~~~a~ll~ld~~~~~ 146 (837)
||||+..+++++-+|.+.|.
T Consensus 65 raLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 65 RRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred HHHHHHhCCeEEEeecceee
Confidence 99999999999999998886
No 224
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.87 E-value=6.8e-09 Score=104.24 Aligned_cols=122 Identities=20% Similarity=0.356 Sum_probs=76.8
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK----- 598 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~----- 598 (837)
|+|.+...+.+.+.+.... ..+.+|||+|++||||+.+|++|.+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 4677777777776665521 234689999999999999999999876 579999999887543
Q ss_pred cccccHH-------HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc-------CCce
Q 003231 599 WFGEDEK-------NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR-------NGER 664 (837)
Q Consensus 599 ~~G~~e~-------~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~-------~~~~ 664 (837)
.+|.... ....+|+.|.. ++||||||+.|.+ .+...|+..++..... ..-+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPP------------ELQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-H------------HHHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhhHH------------HHHHHHHHHHhhchhcccccccccccc
Confidence 3443211 11245666555 8999999999843 3444455555432111 1136
Q ss_pred EEEEEecCCC
Q 003231 665 ILVLAATNRP 674 (837)
Q Consensus 665 vlVIaTTN~~ 674 (837)
+.||+||+..
T Consensus 135 ~RiI~st~~~ 144 (168)
T PF00158_consen 135 VRIIASTSKD 144 (168)
T ss_dssp EEEEEEESS-
T ss_pred ceEEeecCcC
Confidence 8999999874
No 225
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.87 E-value=2.1e-08 Score=122.05 Aligned_cols=194 Identities=22% Similarity=0.318 Sum_probs=117.3
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK 598 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~ 598 (837)
..|++++|.....+.+.+.+.... ....+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 367889999998888877776521 234579999999999999999998865 679999999876432
Q ss_pred -----cccccHH-------HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------
Q 003231 599 -----WFGEDEK-------NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT------- 659 (837)
Q Consensus 599 -----~~G~~e~-------~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~------- 659 (837)
.+|.... .....|+.+ ..++||||||+.|.. .+...|+..++....
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~~------------~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMPL------------ELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCCH------------HHHHHHHHHHHhCCEEeCCCCC
Confidence 3332110 111233333 348999999998842 333444444433211
Q ss_pred cCCceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHHH----HHHHHHhhc----C-----CChhhHHH
Q 003231 660 RNGERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENREM----ILKTLLAKE----K-----VEDLDFKE 719 (837)
Q Consensus 660 ~~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~~----IL~~~l~~~----~-----~~d~dl~~ 719 (837)
....++.+|++|+.. ..+...+..|+ ..+.+..|...+|.+ +++.++.+. + +++..+..
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~ 585 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRT 585 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 112357889988764 23344455555 345566777666643 344444331 1 23333444
Q ss_pred HHHH-cCCCCHHHHHHHHHHHHHHH
Q 003231 720 LAAM-TEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 720 LA~~-t~G~sg~DL~~L~~~Aa~~a 743 (837)
|... .+| +-++|++++..|+..+
T Consensus 586 L~~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 586 LSNMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred HHhCCCCC-cHHHHHHHHHHHHHhC
Confidence 4332 222 4477888887777643
No 226
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=5.9e-08 Score=107.80 Aligned_cols=152 Identities=13% Similarity=0.169 Sum_probs=103.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGAS------------------------FINVSMSTITSKWFGEDEKNVRALFT 612 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~ 612 (837)
+.++.+||+||+|+||+++|.++|..+-+. +..+....- .. .-.-..++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHH
Confidence 567789999999999999999999988321 122211100 00 012334566655
Q ss_pred HHHh----cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHh
Q 003231 613 LAAK----VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERR 688 (837)
Q Consensus 613 ~A~~----~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~ 688 (837)
.+.. ....|++||++|+|.. ...|.|+..++. ++.++++|.+|+.++.+.|.+++|+ ..
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~------------~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~ 161 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTD------------AAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RL 161 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCH------------HHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-cc
Confidence 5443 3457999999999842 345667766654 4567899999999999999999999 57
Q ss_pred hhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHH
Q 003231 689 IMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSD 731 (837)
Q Consensus 689 I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~D 731 (837)
+.|+.|+.++....|.. ..+.+..+...++..+.|-.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~---~~~~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSR---EVTMSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHH---ccCCCHHHHHHHHHHcCCCHHHH
Confidence 89999998887776653 22345555666777777755433
No 227
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.86 E-value=2.8e-08 Score=111.54 Aligned_cols=86 Identities=15% Similarity=0.298 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHH
Q 003231 46 GVSGEQIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQML 125 (837)
Q Consensus 46 ~~~~~~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~L 125 (837)
.+++.++.+.|.+.||-- ++.|..|..|++-|.+...+..-.+ -.-.++.|||.||+++++++|
T Consensus 3 ~~~p~~I~~~Ld~~IiGQ---------------e~AkkalavAl~~~~~r~~l~~~~~-~e~~~~~ILliGp~G~GKT~L 66 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQ---------------DDAKRAVAIALRNRWRRMQLPEELR-DEVTPKNILMIGPTGVGKTEI 66 (443)
T ss_pred CCCHHHHHHHhccccCCH---------------HHHHHHHHHHHHHHHHHhcCCcccc-cccCCceEEEECCCCCCHHHH
Confidence 357778888887776654 7899999999999987765532211 112358899999999999999
Q ss_pred HHHHhhhhCCeEEEeeccccch
Q 003231 126 AKALAHFFESKLLLLDVNDFSL 147 (837)
Q Consensus 126 akALA~~~~a~ll~ld~~~~~~ 147 (837)
||+||+.++++++.+|.+.|..
T Consensus 67 Ar~LAk~l~~~fi~vD~t~f~e 88 (443)
T PRK05201 67 ARRLAKLANAPFIKVEATKFTE 88 (443)
T ss_pred HHHHHHHhCChheeecchhhcc
Confidence 9999999999999999988864
No 228
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.86 E-value=9.9e-09 Score=123.91 Aligned_cols=193 Identities=19% Similarity=0.298 Sum_probs=118.5
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITS- 597 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s- 597 (837)
.+|++++|.+...+.+.+.+.... ....+|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 478999999988888777665521 234569999999999999999998876 47999999987643
Q ss_pred ----ccccccH----HHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc-CC------
Q 003231 598 ----KWFGEDE----KNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR-NG------ 662 (837)
Q Consensus 598 ----~~~G~~e----~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~-~~------ 662 (837)
.++|... ......|+.| ..++||||||+.|.. .+...|+..++..... .+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~------------~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP------------ELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH------------HHHHHHHHHHhcCcEEeCCCCceEE
Confidence 2344220 0001123222 358999999999843 3334444444332111 11
Q ss_pred ceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHH----HHHHHHHhhc--------CCChhhHHHHHHH
Q 003231 663 ERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENRE----MILKTLLAKE--------KVEDLDFKELAAM 723 (837)
Q Consensus 663 ~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~----~IL~~~l~~~--------~~~d~dl~~LA~~ 723 (837)
-++.||+||+.. ..+.+.+..|+ ..+.+..|...+|. .+++.++... .+++..+..|...
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 257889988863 34455565666 45566677776663 3344444332 1244444445443
Q ss_pred c-CCCCHHHHHHHHHHHHHH
Q 003231 724 T-EGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 724 t-~G~sg~DL~~L~~~Aa~~ 742 (837)
. +| +-++|++++..|+..
T Consensus 535 ~WPG-NvreL~~~l~~~~~~ 553 (638)
T PRK11388 535 RWPG-NDFELRSVIENLALS 553 (638)
T ss_pred CCCC-hHHHHHHHHHHHHHh
Confidence 3 22 457788887776654
No 229
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.86 E-value=1.3e-08 Score=114.00 Aligned_cols=195 Identities=19% Similarity=0.236 Sum_probs=119.1
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE----AGASFINVSMSTITS 597 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e----lg~~~i~v~~s~l~s 597 (837)
..+++++|.+...+.+.+-+... .....+||+.|++||||+.+|+.|... .+.|||.+||..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 36778999988888877777651 134567999999999999999999743 367999999998765
Q ss_pred c-----cccccH-------HHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc------
Q 003231 598 K-----WFGEDE-------KNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT------ 659 (837)
Q Consensus 598 ~-----~~G~~e-------~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~------ 659 (837)
. .||..+ ..-..+|+.|.. ++||+|||..|.+ .....++..++....
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~------------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPP------------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCH------------hHHHHHHHHHHcCceEecCCC
Confidence 4 233222 222345555444 8999999999854 233444555554222
Q ss_pred -cCCceEEEEEecCCC--CCCcH--HHHH-HHHHhhhcCCCCHHHH----HHHHHHHHhh----cCC--Chhh---HHHH
Q 003231 660 -RNGERILVLAATNRP--FDLDE--AIIR-RFERRIMVGLPSAENR----EMILKTLLAK----EKV--EDLD---FKEL 720 (837)
Q Consensus 660 -~~~~~vlVIaTTN~~--~~Ld~--aL~r-RF~~~I~~~~P~~eer----~~IL~~~l~~----~~~--~d~d---l~~L 720 (837)
.....|.+|++|+.. ..+-. .+.+ |+.. .+..|+..+| ..++++++.. .+. .... +..|
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~--~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTRRLNIL--TITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhhhhcCc--eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 233468888888752 22222 3444 4433 4455655554 3344444443 333 2222 2222
Q ss_pred HH-HcCCCCHHHHHHHHHHHHHHHHH
Q 003231 721 AA-MTEGYSGSDLKNLCVTAAYRPVR 745 (837)
Q Consensus 721 A~-~t~G~sg~DL~~L~~~Aa~~av~ 745 (837)
-. ..+| +-++|++++..++..+.-
T Consensus 287 ~~y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 287 LAYDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred HhCCCCC-cHHHHHHHHHHHHHHhcc
Confidence 22 2344 457999999998887743
No 230
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.85 E-value=1.7e-08 Score=118.19 Aligned_cols=193 Identities=21% Similarity=0.303 Sum_probs=115.3
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK 598 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~ 598 (837)
.+|++|+|.....+.+.+.+...- ....+|||+|++||||+++|++|.... +.||+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 478899999998888888775421 234689999999999999999998765 679999999877432
Q ss_pred -----cccccHH--------HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc------
Q 003231 599 -----WFGEDEK--------NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT------ 659 (837)
Q Consensus 599 -----~~G~~e~--------~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~------ 659 (837)
.+|..+. ....+|+.|. .+.||||||+.|.. .+...|+..++....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~------------~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPL------------PLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCH------------HHHHHHHHHHhcCcEEecCCC
Confidence 3333221 1123444443 48999999999843 233344444432211
Q ss_pred -cCCceEEEEEecCCCC-------CCcHHHHHHHHHhhhcCCCCHHHHH----HHHHHHHhhcC------CChhhHHH--
Q 003231 660 -RNGERILVLAATNRPF-------DLDEAIIRRFERRIMVGLPSAENRE----MILKTLLAKEK------VEDLDFKE-- 719 (837)
Q Consensus 660 -~~~~~vlVIaTTN~~~-------~Ld~aL~rRF~~~I~~~~P~~eer~----~IL~~~l~~~~------~~d~dl~~-- 719 (837)
.....+.+|++||..- .+.+.+..|+ ..+.+..|...+|. .+++.++.... +++..+..
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 1112457888887641 2333444455 33555666665554 44555554421 23233322
Q ss_pred -----HHHH-cCCCCHHHHHHHHHHHHHH
Q 003231 720 -----LAAM-TEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 720 -----LA~~-t~G~sg~DL~~L~~~Aa~~ 742 (837)
|... .+| +-++|++++..++..
T Consensus 422 ~~~~~L~~y~WPG-NvrEL~nvier~~i~ 449 (526)
T TIGR02329 422 GVADPLQRYPWPG-NVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHhCCCCc-hHHHHHHHHHHHHHh
Confidence 2211 122 347777777777664
No 231
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=7.4e-08 Score=106.24 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=101.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGAS------------------------FINVSMSTITSKWFGEDEKNVRALFT 612 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~ 612 (837)
+.++.+||+||+|+||+++|+++|+.+-+. |+.+...+ ++. -....++.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHH
Confidence 456789999999999999999999988331 12221110 011 12344666655
Q ss_pred HHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHh
Q 003231 613 LAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERR 688 (837)
Q Consensus 613 ~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~ 688 (837)
.+... ...|++||++|.|.. .-.|.|+..++. ++.++++|.+|+.+..+.|.+++|+ ..
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~------------~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~llpTI~SRC-~~ 160 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTE------------AAANALLKTLEE----PRPNTYFLLQADLSAALLPTIYSRC-QT 160 (325)
T ss_pred HHhhccccCCceEEEEechhhhCH------------HHHHHHHHHhcC----CCCCeEEEEEECChHhCchHHHhhc-eE
Confidence 55433 346999999999842 344666666654 4566888889999999999999999 78
Q ss_pred hhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCH
Q 003231 689 IMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 689 I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg 729 (837)
+.|+.|+.++....|..... ..+.....++..+.|-.+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSS---AEISEILTALRINYGRPL 198 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhc---cChHHHHHHHHHcCCCHH
Confidence 89999999888877765432 233334455566665443
No 232
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.84 E-value=7.6e-10 Score=104.81 Aligned_cols=106 Identities=28% Similarity=0.430 Sum_probs=58.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-cccc-ccccc-----cHHH----HHHHHHHHHhcCCeEEEeccccc
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSMS-TITS-KWFGE-----DEKN----VRALFTLAAKVSPTIIFVDEVDS 629 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s-~l~s-~~~G~-----~e~~----l~~lf~~A~~~~psVLfIDEID~ 629 (837)
|+||.|+||+|||++|+++|+.+|..|.+|.+. ++.. +..|. .... -.-+| ..|+++|||++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999998774 3321 11111 0000 00111 26999999998
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHhhccc-------cccCCceEEEEEecCCCC-----CCcHHHHHHH
Q 003231 630 MLGQRTRVGEHEAMRKIKNEFMTHWDGL-------LTRNGERILVLAATNRPF-----DLDEAIIRRF 685 (837)
Q Consensus 630 L~~~r~~~~~~~~~~~i~~~Ll~~ld~~-------~~~~~~~vlVIaTTN~~~-----~Ld~aL~rRF 685 (837)
..+ ++.+.++..|... ...-+..++||||-|+.+ .|++++++||
T Consensus 74 app------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 APP------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S-H------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred CCH------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 643 4445555555432 233345689999999864 7889999988
No 233
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.84 E-value=1.8e-08 Score=118.61 Aligned_cols=194 Identities=20% Similarity=0.267 Sum_probs=115.0
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITS 597 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s 597 (837)
..+|++++|.....+.+.+.+.... .....|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 3489999999987777766664311 234569999999999999999987665 47999999988754
Q ss_pred c-----cccccH-------HHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc-cc----
Q 003231 598 K-----WFGEDE-------KNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL-TR---- 660 (837)
Q Consensus 598 ~-----~~G~~e-------~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~-~~---- 660 (837)
. .+|... .....+|+.|. .+.||||||+.|.+ .+...|+..+.... ..
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSP------------RMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCH------------HHHHHHHHHHhcCCcccCCCC
Confidence 2 233221 01112344333 48999999999843 23334444443321 11
Q ss_pred --CCceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHH----HHHHHHHhh----cC-----CChhhHH
Q 003231 661 --NGERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENRE----MILKTLLAK----EK-----VEDLDFK 718 (837)
Q Consensus 661 --~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~----~IL~~~l~~----~~-----~~d~dl~ 718 (837)
...++.||+||+.+ ..+.+.+..|+ ..+.+..|...+|. .+++.++.. .+ +++..+.
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~ 412 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT 412 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 11257788888764 23566777787 33566667665554 333444432 22 1333333
Q ss_pred HHHHH-cCCCCHHHHHHHHHHHHHH
Q 003231 719 ELAAM-TEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 719 ~LA~~-t~G~sg~DL~~L~~~Aa~~ 742 (837)
.|... .+| .-++|++++..|+..
T Consensus 413 ~L~~y~WPG-NvreL~nvl~~a~~~ 436 (520)
T PRK10820 413 VLTRYGWPG-NVRQLKNAIYRALTQ 436 (520)
T ss_pred HHhcCCCCC-HHHHHHHHHHHHHHh
Confidence 33332 222 346777777666654
No 234
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=5.2e-08 Score=107.25 Aligned_cols=169 Identities=21% Similarity=0.222 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------EEE
Q 003231 531 NEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS---------------------FIN 589 (837)
Q Consensus 531 d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~---------------------~i~ 589 (837)
..+++.+...+... +-++.+||+||+|+||+++|.++|+.+-+. +..
T Consensus 10 ~~~~~~l~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 10 QRAYDQTVAALDAG------------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 44566666665441 456789999999999999999999887321 111
Q ss_pred Ee--ccccccc-cccccHHHHHHHHHHHHhcC----CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCC
Q 003231 590 VS--MSTITSK-WFGEDEKNVRALFTLAAKVS----PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNG 662 (837)
Q Consensus 590 v~--~s~l~s~-~~G~~e~~l~~lf~~A~~~~----psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 662 (837)
+. ...-..+ ...-.-..++.+.+.+...+ ..|++||++|.|.. .-.|.|+..++. ++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~------------~AaNaLLKtLEE----Pp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR------------AACNALLKTLEE----PS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH------------HHHHHHHHHhhC----CC
Confidence 11 1000000 00012334566666554433 46999999999842 344666666554 44
Q ss_pred ceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHHH
Q 003231 663 ERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSDL 732 (837)
Q Consensus 663 ~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~DL 732 (837)
.++++|.+|+.++.+.|.+++|| ..+.|+.|+.++....|.. .+.+..+...++..+.|-.+..+
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~----~~~~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA----QGVSERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH----cCCChHHHHHHHHHcCCCHHHHH
Confidence 56788888899999999999999 7889999999877776653 34555556667777777655444
No 235
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.83 E-value=1.8e-08 Score=109.58 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=62.9
Q ss_pred CcEEEEEccchhHhhh------cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHH
Q 003231 267 SSVILYLRDVDKLLFQ------SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETH 340 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~------~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~r 340 (837)
.+-||||||+|.+... ..+..+.|-..++...++++||++++.+.-......+++|.+||+.+|++++++.+++
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 5689999999984322 1334445555666656789999886654333334468999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003231 341 LVNWKAKLEED 351 (837)
Q Consensus 341 l~Ilk~~l~~d 351 (837)
..|++.++.+.
T Consensus 201 ~~I~~~~l~~~ 211 (284)
T TIGR02880 201 LVIAGLMLKEQ 211 (284)
T ss_pred HHHHHHHHHHh
Confidence 99999876653
No 236
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.82 E-value=1.8e-08 Score=114.71 Aligned_cols=196 Identities=20% Similarity=0.288 Sum_probs=122.8
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK- 598 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~- 598 (837)
.+.+++|...+.+.+.+.+... .....+|||+|++||||..+|++|.... +.||+.+||..+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4556999999999999888662 1344679999999999999999998877 569999999876543
Q ss_pred ----cccccHHH-------HHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc-------cc
Q 003231 599 ----WFGEDEKN-------VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL-------TR 660 (837)
Q Consensus 599 ----~~G~~e~~-------l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~-------~~ 660 (837)
.||+..+. -...|+.|.. +.||||||..|.- .+...|+..+.... ..
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl------------~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL------------ELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH------------HHHHHHHHHHHcCeeEecCCCcc
Confidence 45543321 1124444433 8999999998842 23333333333211 11
Q ss_pred CCceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHHH----HHHHHHhh----cCC--ChhhHHHHHHH
Q 003231 661 NGERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENREM----ILKTLLAK----EKV--EDLDFKELAAM 723 (837)
Q Consensus 661 ~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~~----IL~~~l~~----~~~--~d~dl~~LA~~ 723 (837)
-.-.|.||++||.. ..+-+.|.-|+ .++.+..|...+|.+ ++++++.+ .+. ..+.-+.++.+
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 22368999999984 34556666688 677888887766643 34444433 211 22333333333
Q ss_pred cC-CCC--HHHHHHHHHHHHHHHHH
Q 003231 724 TE-GYS--GSDLKNLCVTAAYRPVR 745 (837)
Q Consensus 724 t~-G~s--g~DL~~L~~~Aa~~av~ 745 (837)
.. .|. -++|+|++..++..+-.
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcCCc
Confidence 22 232 26666766666665433
No 237
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.81 E-value=3.5e-08 Score=109.18 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=49.0
Q ss_pred ccc-ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 003231 523 TFA-DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA-------SFINVSM 592 (837)
Q Consensus 523 ~fd-dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~-------~~i~v~~ 592 (837)
-|+ +++|++++++++.+++..... + .-...+.++|+||||+|||++|++||+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~------g-~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ------G-LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh------c-CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 455 799999999999888765321 1 1123467899999999999999999999965 7777765
No 238
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.81 E-value=2.5e-08 Score=99.63 Aligned_cols=133 Identities=23% Similarity=0.314 Sum_probs=89.1
Q ss_pred cchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------
Q 003231 529 ALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA----------------------- 585 (837)
Q Consensus 529 G~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~----------------------- 585 (837)
|++++++.|..++... +.+..+||+||+|+||+++|+++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 7889999999888762 45678999999999999999999998721
Q ss_pred cEEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccC
Q 003231 586 SFINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRN 661 (837)
Q Consensus 586 ~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 661 (837)
.++.++...... .-....++.+...+... ..-|++|||+|.|.. ...+.|+..|+. +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~------------~a~NaLLK~LEe----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE------------EAQNALLKTLEE----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H------------HHHHHHHHHHHS----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH------------HHHHHHHHHhcC----C
Confidence 233333222100 11234556666554433 356999999999842 455677776664 4
Q ss_pred CceEEEEEecCCCCCCcHHHHHHHHHhhhcCC
Q 003231 662 GERILVLAATNRPFDLDEAIIRRFERRIMVGL 693 (837)
Q Consensus 662 ~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~ 693 (837)
+.++.+|.+|+.+..+-|.+++|+ ..+.|+.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 566899999999999999999998 5666654
No 239
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.81 E-value=3.7e-08 Score=115.72 Aligned_cols=194 Identities=16% Similarity=0.224 Sum_probs=119.2
Q ss_pred ccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc--
Q 003231 524 FADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK-- 598 (837)
Q Consensus 524 fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~-- 598 (837)
+.+++|.....+.+.+.+...- ....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 4569999999888888876521 235689999999999999999999875 579999999887432
Q ss_pred ---cccccHHH-------HHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------cC
Q 003231 599 ---WFGEDEKN-------VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-------RN 661 (837)
Q Consensus 599 ---~~G~~e~~-------l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~ 661 (837)
.+|..... ....|+.+ ..++||||||+.|.. .+...|+..++.... ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL------------ALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCH------------HHHHHHHHHHhcCCEeeCCCCcce
Confidence 23322110 01123333 348999999999843 333444444432211 11
Q ss_pred CceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHH----HHHHHHHhhc----C-----CChhhHHHHH
Q 003231 662 GERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENRE----MILKTLLAKE----K-----VEDLDFKELA 721 (837)
Q Consensus 662 ~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~----~IL~~~l~~~----~-----~~d~dl~~LA 721 (837)
...+.||++||.. ..+.+.+..|+ ..+.+..|...+|. .++++++.+. + +++..+..|.
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 1257889988874 24566666676 34556667665553 3344444321 1 1333444444
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHH
Q 003231 722 AMTEGYSGSDLKNLCVTAAYRPV 744 (837)
Q Consensus 722 ~~t~G~sg~DL~~L~~~Aa~~av 744 (837)
...=-.+-++|++++..|+..+-
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcC
Confidence 33211245788888888877654
No 240
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.79 E-value=1.4e-07 Score=104.98 Aligned_cols=168 Identities=23% Similarity=0.314 Sum_probs=108.8
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec---------
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSM--------- 592 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~--------- 592 (837)
..|.-++|++..+..|...... ....++||.|+.|+|||+++|+||.-+.---+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4677899999998887543322 245789999999999999999999988211111111
Q ss_pred ----c-------------------ccccccccccHHH------HHHHHH----------HHHhcCCeEEEecccccccCC
Q 003231 593 ----S-------------------TITSKWFGEDEKN------VRALFT----------LAAKVSPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 593 ----s-------------------~l~s~~~G~~e~~------l~~lf~----------~A~~~~psVLfIDEID~L~~~ 633 (837)
. .++..-.|.++.. +.+..+ .++. ..+||+|||+..|..
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~d- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccccH-
Confidence 0 0111112333331 111111 1111 237999999998742
Q ss_pred CCCcchHHHHHHHHHHHHHhhcc---------ccccCCceEEEEEecCCC-CCCcHHHHHHHHHhhhcCCC-CHHHHHHH
Q 003231 634 RTRVGEHEAMRKIKNEFMTHWDG---------LLTRNGERILVLAATNRP-FDLDEAIIRRFERRIMVGLP-SAENREMI 702 (837)
Q Consensus 634 r~~~~~~~~~~~i~~~Ll~~ld~---------~~~~~~~~vlVIaTTN~~-~~Ld~aL~rRF~~~I~~~~P-~~eer~~I 702 (837)
.+.+.|+..+.. +.-.-+-++++|+|+|.- ..|-|.|++||...+.+..| +.++|.+|
T Consensus 159 -----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 159 -----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred -----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHH
Confidence 455555554443 333344579999999986 57999999999999988766 68899999
Q ss_pred HHHHHhhcCCChh
Q 003231 703 LKTLLAKEKVEDL 715 (837)
Q Consensus 703 L~~~l~~~~~~d~ 715 (837)
.+..+.-...++.
T Consensus 228 i~r~~~f~~~Pe~ 240 (423)
T COG1239 228 IRRRLAFEAVPEA 240 (423)
T ss_pred HHHHHHhhcCcHH
Confidence 9887765433433
No 241
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.79 E-value=6.6e-08 Score=101.81 Aligned_cols=100 Identities=21% Similarity=0.198 Sum_probs=65.9
Q ss_pred CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC-------------CCCCcHHHHHHH
Q 003231 619 PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR-------------PFDLDEAIIRRF 685 (837)
Q Consensus 619 psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~-------------~~~Ld~aL~rRF 685 (837)
|+||||||++.|-- ..+..|...++.- -.-+||.+||+ |+.+++.+++|+
T Consensus 297 PGVLFIDEVhMLDi------------EcFTyL~kalES~-----iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl 359 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDI------------ECFTYLHKALESP-----IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL 359 (456)
T ss_pred CcceEeeehhhhhh------------HHHHHHHHHhcCC-----CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe
Confidence 78999999987611 1222222222221 11366667776 677899999998
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHH
Q 003231 686 ERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLC 736 (837)
Q Consensus 686 ~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~ 736 (837)
.+|..-.++.++.++|++.....+++ ++..+..|+.....-|-+.-..|+
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl 411 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLL 411 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhc
Confidence 67777777888999999988887776 777788888765544444333333
No 242
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.78 E-value=3.5e-08 Score=111.02 Aligned_cols=196 Identities=21% Similarity=0.300 Sum_probs=123.3
Q ss_pred CCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 517 ANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 517 ~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
.++....+.+|||...+...+.+.|... .+....|||.|.+||||..+||+|.... +.||+.+||.
T Consensus 215 ~~~~~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCA 283 (550)
T COG3604 215 LSEVVLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCA 283 (550)
T ss_pred ccchhcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecc
Confidence 3344567888999999999998888763 1345689999999999999999998877 6799999998
Q ss_pred ccccc-----cccccHHHHHHHHHHHHhc--------CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc-c
Q 003231 594 TITSK-----WFGEDEKNVRALFTLAAKV--------SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL-T 659 (837)
Q Consensus 594 ~l~s~-----~~G~~e~~l~~lf~~A~~~--------~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~-~ 659 (837)
.+... .||...+ .|.-|... ..+.||+|||..|.. .+...|+..+.... .
T Consensus 284 AlPesLlESELFGHeKG----AFTGA~~~r~GrFElAdGGTLFLDEIGelPL------------~lQaKLLRvLQegEie 347 (550)
T COG3604 284 ALPESLLESELFGHEKG----AFTGAINTRRGRFELADGGTLFLDEIGELPL------------ALQAKLLRVLQEGEIE 347 (550)
T ss_pred ccchHHHHHHHhccccc----ccccchhccCcceeecCCCeEechhhccCCH------------HHHHHHHHHHhhccee
Confidence 77543 4555433 33333222 237999999988742 22222333222111 1
Q ss_pred ------cCCceEEEEEecCCCCCCcHHHHH---------HHHHhhhcCCCCHHHHH----HHHHHHHhh----cCC----
Q 003231 660 ------RNGERILVLAATNRPFDLDEAIIR---------RFERRIMVGLPSAENRE----MILKTLLAK----EKV---- 712 (837)
Q Consensus 660 ------~~~~~vlVIaTTN~~~~Ld~aL~r---------RF~~~I~~~~P~~eer~----~IL~~~l~~----~~~---- 712 (837)
.-.-.|.|||+||+ +|..++++ |+ .++.+..|...+|. .+.++++.+ .+.
T Consensus 348 RvG~~r~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ 424 (550)
T COG3604 348 RVGGDRTIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILS 424 (550)
T ss_pred ecCCCceeEEEEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccc
Confidence 11135899999998 34444444 44 34455556655542 233444433 222
Q ss_pred -ChhhHHHHHHH-cCCCCHHHHHHHHHHHHHHH
Q 003231 713 -EDLDFKELAAM-TEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 713 -~d~dl~~LA~~-t~G~sg~DL~~L~~~Aa~~a 743 (837)
+...++.|... .+| +-++|++++..|+..|
T Consensus 425 ls~~Al~~L~~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 425 LSAEALELLSSYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred cCHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHh
Confidence 33444444443 223 3489999999999977
No 243
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.76 E-value=1.2e-08 Score=108.94 Aligned_cols=179 Identities=17% Similarity=0.247 Sum_probs=117.5
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.|.+.+++. .++++++++++...+.++... ....++|+|||||+|||+...+.|..+-
T Consensus 30 pwvekyrP~---------~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly 87 (360)
T KOG0990|consen 30 PWVEKYRPP---------FLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFY 87 (360)
T ss_pred CCccCCCCc---------hhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhc
Confidence 455666655 788999999999999887543 2234899999999999999999999885
Q ss_pred Cc------EEEEeccccccccccccHHHHHHHHHHHHh-------cCCeEEEecccccccCCCCCcchHHHHHHHHHHHH
Q 003231 585 AS------FINVSMSTITSKWFGEDEKNVRALFTLAAK-------VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 651 (837)
Q Consensus 585 ~~------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~-------~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll 651 (837)
.+ +..++.++-.+ .+-... --..|...+. ..+..+++||.|.+.. ..+.+++++...+
T Consensus 88 ~~~~~~~m~lelnaSd~rg--id~vr~-qi~~fast~~~~~fst~~~fKlvILDEADaMT~-----~AQnALRRviek~- 158 (360)
T KOG0990|consen 88 SPHPTTSMLLELNASDDRG--IDPVRQ-QIHLFASTQQPTTYSTHAAFKLVILDEADAMTR-----DAQNALRRVIEKY- 158 (360)
T ss_pred CCCCchhHHHHhhccCccC--CcchHH-HHHHHHhhccceeccccCceeEEEecchhHhhH-----HHHHHHHHHHHHh-
Confidence 43 12233332111 111111 1234444442 2567999999998843 2233444433322
Q ss_pred HhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcC
Q 003231 652 THWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTE 725 (837)
Q Consensus 652 ~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~ 725 (837)
..++.+...+|.+..+.|++++|| ..+.|...+.+.....+.+++..+.. ..+-...++..+.
T Consensus 159 ----------t~n~rF~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~ 223 (360)
T KOG0990|consen 159 ----------TANTRFATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSV 223 (360)
T ss_pred ----------ccceEEEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhH
Confidence 234666677899999999999999 67788888888888888888776654 3444444444443
No 244
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=8.9e-08 Score=106.34 Aligned_cols=132 Identities=18% Similarity=0.203 Sum_probs=92.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------------------EEEeccccc---------------
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASF-------------------------INVSMSTIT--------------- 596 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~-------------------------i~v~~s~l~--------------- 596 (837)
+.++++||+||+|+||+++|+++|+.+.+.. ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5678999999999999999999999884421 112111000
Q ss_pred ---cc----c-ccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCce
Q 003231 597 ---SK----W-FGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGER 664 (837)
Q Consensus 597 ---s~----~-~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~ 664 (837)
++ . -.-.-..++.+...+... ...|++||++|+|.. ...|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~------------~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV------------AAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH------------HHHHHHHHHhcC----CCcC
Confidence 00 0 001123455555554332 346999999999843 445677776663 5567
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 003231 665 ILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKT 705 (837)
Q Consensus 665 vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~ 705 (837)
+++|.+|+.++.+.|.+++|+ ..+.|+.|+.++..+.|..
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 899999999999999999999 7899999999988888765
No 245
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.76 E-value=1.7e-07 Score=109.07 Aligned_cols=199 Identities=18% Similarity=0.232 Sum_probs=128.4
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSMSTIT 596 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~s~l~ 596 (837)
+.+.+.-...|..++...+.. + .....+.+.|-||||||.+++.+..++ .+.|++|++-.+.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-Q-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-C-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 667777777777777653322 1 123469999999999999999998866 4778889887665
Q ss_pred cc----------ccccc------HHHHHHHHHHH-HhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc
Q 003231 597 SK----------WFGED------EKNVRALFTLA-AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT 659 (837)
Q Consensus 597 s~----------~~G~~------e~~l~~lf~~A-~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~ 659 (837)
+. +-|+. -..+..-|... .+..++||+|||+|.|+... +..+..+-.+..
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-------------QdVlYn~fdWpt 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-------------QDVLYNIFDWPT 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-------------HHHHHHHhcCCc
Confidence 43 12221 11222223311 23357899999999998643 233444445566
Q ss_pred cCCceEEEEEecCCCCCCc----HHHHHHHH-HhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCH--HH
Q 003231 660 RNGERILVLAATNRPFDLD----EAIIRRFE-RRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSG--SD 731 (837)
Q Consensus 660 ~~~~~vlVIaTTN~~~~Ld----~aL~rRF~-~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg--~D 731 (837)
..+.+++||+..|..+... ..+-+|++ .++.|.+++.++.++|+...+..... .+...+-+|+.....|| +.
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRr 616 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARR 616 (767)
T ss_pred CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHH
Confidence 6778899999988864322 23334543 56789999999999999988876533 44555556666555555 23
Q ss_pred HHHHHHHHHHHHHHH
Q 003231 732 LKNLCVTAAYRPVRE 746 (837)
Q Consensus 732 L~~L~~~Aa~~av~r 746 (837)
...+|++|+-.|-.+
T Consensus 617 aldic~RA~Eia~~~ 631 (767)
T KOG1514|consen 617 ALDICRRAAEIAEER 631 (767)
T ss_pred HHHHHHHHHHHhhhh
Confidence 335566665555443
No 246
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.6e-09 Score=118.89 Aligned_cols=47 Identities=36% Similarity=0.543 Sum_probs=41.2
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|.||.|++.+|..+.-+... .+++||+||||||||++|+.+..-+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 3789999999999999877754 5789999999999999999987655
No 247
>PRK12377 putative replication protein; Provisional
Probab=98.72 E-value=4.8e-08 Score=103.98 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=70.1
Q ss_pred HHhhCCCccCCCCCCcccccccc----chHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 507 EKRIRPEVIPANEIGVTFADIGA----LNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 507 ~~~l~~~~i~~~~~~v~fddIiG----~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
+..+....+++.....+|+.... +..++..+..++... . ....+++|+||||||||+||.++|++
T Consensus 56 ~~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~-------~----~~~~~l~l~G~~GtGKThLa~AIa~~ 124 (248)
T PRK12377 56 EKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADEL-------M----TGCTNFVFSGKPGTGKNHLAAAIGNR 124 (248)
T ss_pred HHHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHHH-------H----hcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34445556676666778888753 333444444444331 1 12368999999999999999999998
Q ss_pred h---CCcEEEEecccccccccccc--HHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 583 A---GASFINVSMSTITSKWFGED--EKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 583 l---g~~~i~v~~s~l~s~~~G~~--e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
+ |..++.++..++....-..- ......++... ....+|+|||+...
T Consensus 125 l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 125 LLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 8 67888888887765421110 00111233322 34689999999754
No 248
>PRK08116 hypothetical protein; Validated
Probab=98.69 E-value=5.3e-08 Score=105.06 Aligned_cols=171 Identities=20% Similarity=0.237 Sum_probs=91.9
Q ss_pred hhCCCccCCCCCCccccccccchH---HHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 003231 509 RIRPEVIPANEIGVTFADIGALNE---IKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-- 583 (837)
Q Consensus 509 ~l~~~~i~~~~~~v~fddIiG~d~---vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-- 583 (837)
......+++.....+|++...-+. ++..+.+++.. |... .....+++|+||||||||+||.++|+++
T Consensus 69 l~~~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~-~~~~~gl~l~G~~GtGKThLa~aia~~l~~ 140 (268)
T PRK08116 69 LKSNSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEM-KKENVGLLLWGSVGTGKTYLAACIANELIE 140 (268)
T ss_pred HHHhcCCCHHHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhh-ccCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334445555555668887653333 33334433332 1111 1234579999999999999999999986
Q ss_pred -CCcEEEEecccccccccc----ccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc
Q 003231 584 -GASFINVSMSTITSKWFG----EDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL 658 (837)
Q Consensus 584 -g~~~i~v~~s~l~s~~~G----~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~ 658 (837)
+.+++.++.+++...+.. ........++.... ...+|+|||+...-. .+. ....|...++...
T Consensus 141 ~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~~-------t~~---~~~~l~~iin~r~ 208 (268)
T PRK08116 141 KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAERD-------TEW---AREKVYNIIDSRY 208 (268)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCCC-------CHH---HHHHHHHHHHHHH
Confidence 788999998877654321 11111222333222 346999999964211 111 1223333333322
Q ss_pred ccCCceEEEEEecCCC-CC----CcHHHHHHHH---HhhhcCCCCHHHHHHHHH
Q 003231 659 TRNGERILVLAATNRP-FD----LDEAIIRRFE---RRIMVGLPSAENREMILK 704 (837)
Q Consensus 659 ~~~~~~vlVIaTTN~~-~~----Ld~aL~rRF~---~~I~~~~P~~eer~~IL~ 704 (837)
. .+ ..+|.|||.+ .. ++..+.+|+- ..|.+..++ -|..+.+
T Consensus 209 ~-~~--~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d--~R~~~~~ 257 (268)
T PRK08116 209 R-KG--LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS--YRKEIAK 257 (268)
T ss_pred H-CC--CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC--hhHHHHH
Confidence 1 11 3567777764 23 4567777752 223444444 3554444
No 249
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=4.5e-07 Score=101.42 Aligned_cols=187 Identities=16% Similarity=0.200 Sum_probs=127.4
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccc--
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTITSK-- 598 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l~s~-- 598 (837)
.+.|.+.-.+.++++++.++.. ...+++.+.|-||||||.+...+-... ....++++|..+...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 4899999999999999876543 456789999999999999999776554 234578888765332
Q ss_pred --------c----ccc-cHHHHHHHHHHHH-hc-CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCc
Q 003231 599 --------W----FGE-DEKNVRALFTLAA-KV-SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGE 663 (837)
Q Consensus 599 --------~----~G~-~e~~l~~lf~~A~-~~-~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 663 (837)
+ .+. .+......|+.-. .. .+-||++||+|.|+.... ..+..+..+....+.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-------------~vLy~lFewp~lp~s 288 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-------------TVLYTLFEWPKLPNS 288 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-------------ceeeeehhcccCCcc
Confidence 1 111 1122223333322 22 367889999999974331 223333344445677
Q ss_pred eEEEEEecCCCCCCcHHHHH---HH---HHhhhcCCCCHHHHHHHHHHHHhhcCC---ChhhHHHHHHHcCCCCHHHHHH
Q 003231 664 RILVLAATNRPFDLDEAIIR---RF---ERRIMVGLPSAENREMILKTLLAKEKV---EDLDFKELAAMTEGYSGSDLKN 734 (837)
Q Consensus 664 ~vlVIaTTN~~~~Ld~aL~r---RF---~~~I~~~~P~~eer~~IL~~~l~~~~~---~d~dl~~LA~~t~G~sg~DL~~ 734 (837)
++++|+.+|..+.-|-.|.+ |. +..+.|++++.++..+|+...+..... .+..++-.|....|.|| |++.
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRk 367 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRK 367 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHH
Confidence 89999999987544433333 21 456799999999999999999888765 34567788899998887 6664
Q ss_pred H
Q 003231 735 L 735 (837)
Q Consensus 735 L 735 (837)
+
T Consensus 368 a 368 (529)
T KOG2227|consen 368 A 368 (529)
T ss_pred H
Confidence 4
No 250
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.67 E-value=9e-08 Score=101.67 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=88.6
Q ss_pred HHhhCCCccCCCCCCccccccccc-hH---HHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 507 EKRIRPEVIPANEIGVTFADIGAL-NE---IKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 507 ~~~l~~~~i~~~~~~v~fddIiG~-d~---vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...+....+++.....+|++..-. +. ++..+.+++.. +. ....+++|+||||||||+|+.++|.+
T Consensus 54 ~~~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~----~~~~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 54 QRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD----GNIASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred HHHHHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc----cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 334445556666667788886532 22 33334333322 11 12358999999999999999999998
Q ss_pred h---CCcEEEEeccccccccccc---cHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcc
Q 003231 583 A---GASFINVSMSTITSKWFGE---DEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDG 656 (837)
Q Consensus 583 l---g~~~i~v~~s~l~s~~~G~---~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~ 656 (837)
+ |..++.++..++....... .......++.... ...+|+|||++.... .+....++..++..
T Consensus 123 l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~-------s~~~~~~l~~Ii~~--- 190 (244)
T PRK07952 123 LLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE-------SRYEKVIINQIVDR--- 190 (244)
T ss_pred HHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-------CHHHHHHHHHHHHH---
Confidence 8 7888889888876543221 1111223444332 468999999987531 12222344444332
Q ss_pred ccccCCceEEEEEecCCC-----CCCcHHHHHHH
Q 003231 657 LLTRNGERILVLAATNRP-----FDLDEAIIRRF 685 (837)
Q Consensus 657 ~~~~~~~~vlVIaTTN~~-----~~Ld~aL~rRF 685 (837)
- . ..+..+|.|||.. ..++..+.+|+
T Consensus 191 R-y--~~~~~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 191 R-S--SSKRPTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred H-H--hCCCCEEEeCCCCHHHHHHHhChHHHHHH
Confidence 1 1 1124667788864 23445555555
No 251
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.67 E-value=2.2e-07 Score=108.46 Aligned_cols=208 Identities=16% Similarity=0.233 Sum_probs=124.6
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
.+.|.++++|. +.+|+..+..-++.++.++...+. +..+.+-+||+||||||||++++.+|++
T Consensus 6 ~~~W~~ky~P~---------~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 6 SEPWVEKYAPK---------TLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred cCccchhcCCC---------CHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 45688888887 888999998888888888865221 1134557899999999999999999999
Q ss_pred hCCcEEEEe-ccccc------ccccccc------HHH---HHHH-HHHHHh-----------cCCeEEEecccccccCCC
Q 003231 583 AGASFINVS-MSTIT------SKWFGED------EKN---VRAL-FTLAAK-----------VSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 583 lg~~~i~v~-~s~l~------s~~~G~~------e~~---l~~l-f~~A~~-----------~~psVLfIDEID~L~~~r 634 (837)
+|+.+.+.. ...+. ..+.+.. ... ...+ +..++. ..+.||+|||+-.++...
T Consensus 69 lg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~ 148 (519)
T PF03215_consen 69 LGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD 148 (519)
T ss_pred hCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh
Confidence 999888753 22211 0111110 011 1111 111111 235799999997654311
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCc-eEEEEEe-c------CCC--------CCCcHHHHH--HHHHhhhcCCCCH
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGE-RILVLAA-T------NRP--------FDLDEAIIR--RFERRIMVGLPSA 696 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~-~vlVIaT-T------N~~--------~~Ld~aL~r--RF~~~I~~~~P~~ 696 (837)
. ..+...|...+.. ... .+++|.| + |.. ..+++.++. ++ .+|.|++-..
T Consensus 149 -----~---~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~ 215 (519)
T PF03215_consen 149 -----T---SRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAP 215 (519)
T ss_pred -----H---HHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCH
Confidence 1 2233333322222 112 4666666 1 111 135677776 34 6688998888
Q ss_pred HHHHHHHHHHHhhc-----C---CCh-h-hHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 003231 697 ENREMILKTLLAKE-----K---VED-L-DFKELAAMTEGYSGSDLKNLCVTAAYRPV 744 (837)
Q Consensus 697 eer~~IL~~~l~~~-----~---~~d-~-dl~~LA~~t~G~sg~DL~~L~~~Aa~~av 744 (837)
.-..+.|+.++..+ + .++ . .++.|+..+. +||+.++..-.+.+.
T Consensus 216 T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 216 TFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 88888888887765 1 122 2 3667776654 488877765555554
No 252
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=5.8e-07 Score=98.97 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------cE
Q 003231 531 NEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA-----------------------SF 587 (837)
Q Consensus 531 d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~-----------------------~~ 587 (837)
..+.+.+...+... +.++.+||+||.|+||+++|+++|+.+-+ .|
T Consensus 9 ~~~~~~l~~~~~~~------------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 9 VPVWQNWKAGLDAG------------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 45566666665431 56778999999999999999999998732 12
Q ss_pred EEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCc
Q 003231 588 INVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGE 663 (837)
Q Consensus 588 i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 663 (837)
+.+.... .++. -....++.+.+.+... ...|++||++|.|.. ...|.|+..++. ++.
T Consensus 77 ~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~------------~AaNaLLKtLEE----Pp~ 137 (319)
T PRK06090 77 HVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE------------SASNALLKTLEE----PAP 137 (319)
T ss_pred EEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH------------HHHHHHHHHhcC----CCC
Confidence 2222211 0011 1233456555554433 357999999999842 345667766654 456
Q ss_pred eEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCH
Q 003231 664 RILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 664 ~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg 729 (837)
++++|.+|+.++.+-|.+++|+ ..+.|+.|+.++..+.+.. .+.+ ....++..+.|-.+
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~----~~~~--~~~~~l~l~~G~p~ 196 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG----QGIT--VPAYALKLNMGSPL 196 (319)
T ss_pred CeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH----cCCc--hHHHHHHHcCCCHH
Confidence 6889999999999999999999 7889999999888777653 2222 12345555665433
No 253
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.63 E-value=6.6e-07 Score=110.21 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=55.3
Q ss_pred CCcEEEEEccchhHhhhcH-HHHHHHHHHHHh---------c------cCCEEEEecccccCCCCCCchhHHHHccCCce
Q 003231 266 TSSVILYLRDVDKLLFQSQ-RFYNLLDKLLKK---------L------SGSVLVLGSRMLEPEDDCRDVDERLTILFPYN 329 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~-~~~~~lk~~l~~---------l------~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~ 329 (837)
..| ||||||||++-.+.. +.++.|-..|+. + .+++.+|++ +|....++++|.+||. .
T Consensus 414 ~~~-villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~T-----tN~~~~i~~~L~~R~~-v 486 (775)
T TIGR00763 414 KNP-LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIAT-----ANSIDTIPRPLLDRME-V 486 (775)
T ss_pred CCC-EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEe-----cCCchhCCHHHhCCee-E
Confidence 456 678999999665321 233333333321 1 036777765 5667889999999997 8
Q ss_pred eeeCCCChHHHHHHHHHHHH
Q 003231 330 LEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 330 IeI~~P~~e~rl~Ilk~~l~ 349 (837)
|+++.|+.+++..||+.++.
T Consensus 487 i~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 487 IELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred EecCCCCHHHHHHHHHHHHH
Confidence 99999999999999998874
No 254
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.63 E-value=1.7e-07 Score=108.34 Aligned_cols=193 Identities=17% Similarity=0.245 Sum_probs=113.5
Q ss_pred ccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-
Q 003231 524 FADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW- 599 (837)
Q Consensus 524 fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~- 599 (837)
+.+++|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 445777777777766655431 0234679999999999999999998776 4789999998874331
Q ss_pred ----ccccHHH-------HHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------cC
Q 003231 600 ----FGEDEKN-------VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-------RN 661 (837)
Q Consensus 600 ----~G~~e~~-------l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~ 661 (837)
+|..... ....+. ....++||||||+.|.. .+...|+..++.... ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~------------~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDLPL------------NLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhCCH------------HHHHHHHHHHhhCeEEeCCCCcee
Confidence 2211100 001111 22358999999999843 333344444432211 11
Q ss_pred CceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHHH----HHHHHHhhc----C-----CChhhHHHHH
Q 003231 662 GERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENREM----ILKTLLAKE----K-----VEDLDFKELA 721 (837)
Q Consensus 662 ~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~~----IL~~~l~~~----~-----~~d~dl~~LA 721 (837)
..++.+|+||+.. ..+.+.+..|+ ..+.+..|...+|.+ +++.++... + +++..+..|.
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALE 350 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 1257888888764 35667777777 456667777766654 444444331 1 2334444444
Q ss_pred HHcCCCCHHHHHHHHHHHHHHH
Q 003231 722 AMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 722 ~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
...=--+-++|++++..|+..+
T Consensus 351 ~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 351 AHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred hCCCCChHHHHHHHHHHHHHhC
Confidence 3321124577777777776543
No 255
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.61 E-value=1.3e-07 Score=114.71 Aligned_cols=166 Identities=15% Similarity=0.182 Sum_probs=100.2
Q ss_pred cccchHHHHHHHHHHHcccCCchhhc--------CCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEe
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFK--------GGLLKPCRGILLFGPPGTGKTMLAKAIANEAG-------ASFINVS 591 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~--------~~~~~p~~~iLL~GPpGtGKT~LAralA~elg-------~~~i~v~ 591 (837)
|.|++.+|..|.-.+........-+. ....+...+|||+|+||||||.+|+++++... .++..+.
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg 531 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG 531 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcccc
Confidence 99999999998666654332211010 12234556899999999999999999998652 3444444
Q ss_pred ccccccccccc--cHHHH-HHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccc---------cc
Q 003231 592 MSTITSKWFGE--DEKNV-RALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL---------LT 659 (837)
Q Consensus 592 ~s~l~s~~~G~--~e~~l-~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~---------~~ 659 (837)
+..... +.+. .+..+ ...+. ....++++|||++.+.. .....|+..|+.. ..
T Consensus 532 LTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms~------------~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 532 LTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKCHN------------ESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred ccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhCCH------------HHHHHHHHHHhCCEEEEecCCcce
Confidence 433211 0000 00000 00111 12247999999999842 2233344444322 22
Q ss_pred cCCceEEEEEecCCC-------------CCCcHHHHHHHHHhh-hcCCCCHHHHHHHHHHHHh
Q 003231 660 RNGERILVLAATNRP-------------FDLDEAIIRRFERRI-MVGLPSAENREMILKTLLA 708 (837)
Q Consensus 660 ~~~~~vlVIaTTN~~-------------~~Ld~aL~rRF~~~I-~~~~P~~eer~~IL~~~l~ 708 (837)
.-+.++.||||+|+. -.|++.+++|||.++ .++.|+.+.-..|..+++.
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 234578999999984 257899999998775 4578888777777666654
No 256
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.60 E-value=1.6e-06 Score=96.38 Aligned_cols=210 Identities=13% Similarity=0.133 Sum_probs=126.8
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchh
Q 003231 69 TFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLK 148 (837)
Q Consensus 69 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~ 148 (837)
+|++|-+- ++.+..|..+.-..... ....+.+||+||++++++.||+++|++.++.+.......+..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~- 89 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK- 89 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-
Confidence 49999986 88887776665432221 134567999999999999999999999997765433222100
Q ss_pred hhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccccc
Q 003231 149 MQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSIS 228 (837)
Q Consensus 149 ~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (837)
T Consensus 90 -------------------------------------------------------------------------------- 89 (328)
T PRK00080 90 -------------------------------------------------------------------------------- 89 (328)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHHHHHHHHHHHHhcc----------
Q 003231 229 SLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLS---------- 298 (837)
Q Consensus 229 ~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~---------- 298 (837)
...|..++..+ ..+.||||||||.+-....++ +-..++...
T Consensus 90 ------------------------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~e~---l~~~~e~~~~~~~l~~~~~ 140 (328)
T PRK00080 90 ------------------------PGDLAAILTNL--EEGDVLFIDEIHRLSPVVEEI---LYPAMEDFRLDIMIGKGPA 140 (328)
T ss_pred ------------------------hHHHHHHHHhc--ccCCEEEEecHhhcchHHHHH---HHHHHHhcceeeeeccCcc
Confidence 00022222232 246799999999953222232 222233211
Q ss_pred --------CCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhc
Q 003231 299 --------GSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAA 370 (837)
Q Consensus 299 --------g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~ 370 (837)
.++.+||+ +++...++.+|..||...+++.+|+.++..+|++...... ++....
T Consensus 141 ~~~~~~~l~~~~li~a-----t~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~----~~~~~~--------- 202 (328)
T PRK00080 141 ARSIRLDLPPFTLIGA-----TTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL----GVEIDE--------- 202 (328)
T ss_pred ccceeecCCCceEEee-----cCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----CCCcCH---------
Confidence 13556776 4455678899999998889999999999999999754321 111111
Q ss_pred CCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHh
Q 003231 371 NDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 371 ~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
-.+..|...|.. .| -.+..+......++..... -.|+.+.+..+++.+
T Consensus 203 --~~~~~ia~~~~G---~p-R~a~~~l~~~~~~a~~~~~--------~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 203 --EGALEIARRSRG---TP-RIANRLLRRVRDFAQVKGD--------GVITKEIADKALDML 250 (328)
T ss_pred --HHHHHHHHHcCC---Cc-hHHHHHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHh
Confidence 134556667766 33 3344444444444433211 136777777777643
No 257
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.59 E-value=9.2e-07 Score=93.65 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=59.6
Q ss_pred CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 003231 674 PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVREL 747 (837)
Q Consensus 674 ~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~ 747 (837)
|+-++-.|++|. .+|...+++.++..+||+..+..+.+ ++..++.|.......+-+.--+|+..|.+.+.+|-
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk 413 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK 413 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 677888999998 77888888999999999999988776 66777777777666677777788888888887764
No 258
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.57 E-value=8e-08 Score=111.50 Aligned_cols=145 Identities=23% Similarity=0.311 Sum_probs=90.0
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec------
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG----ASFINVSM------ 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg----~~~i~v~~------ 592 (837)
.|.++.|+..+++.+.-.+ ....+++|+||||+|||++++.++..+. -..+++..
T Consensus 189 d~~~v~Gq~~~~~al~laa---------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA---------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhheec---------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 6778999887776653222 3457899999999999999999997652 11111111
Q ss_pred c-----cc-----cc--------ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhh
Q 003231 593 S-----TI-----TS--------KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHW 654 (837)
Q Consensus 593 s-----~l-----~s--------~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~l 654 (837)
. .+ .+ ..+|.....-...+..|.. ++|||||++.+-. .+...|+..|
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~~------------~~~~~L~~~L 318 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFER------------RTLDALREPI 318 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCCH------------HHHHHHHHHH
Confidence 0 00 00 0122211111123344333 8999999987632 4445555555
Q ss_pred ccccc---------cCCceEEEEEecCCCC---------------------CCcHHHHHHHHHhhhcCCCCHH
Q 003231 655 DGLLT---------RNGERILVLAATNRPF---------------------DLDEAIIRRFERRIMVGLPSAE 697 (837)
Q Consensus 655 d~~~~---------~~~~~vlVIaTTN~~~---------------------~Ld~aL~rRF~~~I~~~~P~~e 697 (837)
+.... ....++.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 33221 1234689999999742 4778999999999999988765
No 259
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.53 E-value=4.4e-07 Score=108.23 Aligned_cols=48 Identities=29% Similarity=0.424 Sum_probs=41.5
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
..|++|+|++++++.|..++.. .++++|+||||||||++|++++..+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3788999999999999887754 24799999999999999999998774
No 260
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.52 E-value=1e-06 Score=102.61 Aligned_cols=193 Identities=19% Similarity=0.271 Sum_probs=113.1
Q ss_pred ccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc--
Q 003231 524 FADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK-- 598 (837)
Q Consensus 524 fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~-- 598 (837)
+.+++|.......+.+.+... ......++|.|++|||||++|+++.... +.+|+.++|..+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred cccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 445788877777766655431 1234579999999999999999999876 579999999887432
Q ss_pred ---cccccHHHH-------HHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------cC
Q 003231 599 ---WFGEDEKNV-------RALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-------RN 661 (837)
Q Consensus 599 ---~~G~~e~~l-------~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~ 661 (837)
.+|...... ...|. ....+.||||||+.|.. .....|+..++.... ..
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l~~------------~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDMPL------------DVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccCCH------------HHHHHHHHHHhcCcEEeCCCCCeE
Confidence 122211100 01122 22357999999999843 233344444433211 11
Q ss_pred CceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHH----HHHHHHHHhhc----C-----CChhhHHHHH
Q 003231 662 GERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENR----EMILKTLLAKE----K-----VEDLDFKELA 721 (837)
Q Consensus 662 ~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer----~~IL~~~l~~~----~-----~~d~dl~~LA 721 (837)
..++.||+||+.. ..+.+.+..|| ..+.+..|...+| ..++++++... + +++..+..|.
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 349 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT 349 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 1246888888763 35677888888 3345555554444 44555555432 1 1333344443
Q ss_pred HHcCCCCHHHHHHHHHHHHHHH
Q 003231 722 AMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 722 ~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
...=--+-++|+++++.|+..+
T Consensus 350 ~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 350 RLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred hCCCCChHHHHHHHHHHHHHhC
Confidence 3321124478888887776644
No 261
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=6.8e-07 Score=99.02 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---cccc-ccccHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGA-------------------------SFINVSMSTI---TSKW-FGEDEKNV 607 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~-------------------------~~i~v~~s~l---~s~~-~G~~e~~l 607 (837)
+.++.+||+||+|+|||++|+.+|+.+.+ .|+.+++..- .++. -.-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 56778999999999999999999998732 2333433110 0000 00124456
Q ss_pred HHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHH
Q 003231 608 RALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIR 683 (837)
Q Consensus 608 ~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~r 683 (837)
+.+.+.+... ...|++||+++.|-. ...+.++..++... ..+.+|.+|+.+..+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL------------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH------------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7777666543 356999999998832 33455666665541 235666788888899999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHH
Q 003231 684 RFERRIMVGLPSAENREMILKT 705 (837)
Q Consensus 684 RF~~~I~~~~P~~eer~~IL~~ 705 (837)
|+ ..+.|+.|+.++....|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 8889999999887777653
No 262
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.50 E-value=1.8e-06 Score=98.49 Aligned_cols=85 Identities=25% Similarity=0.415 Sum_probs=62.2
Q ss_pred ccCCCccccccccc-cccccHHHHHHHHHHHHhhcccccccccc-cccCCCCCceEeecChhHHHHHHHHHHhhhhCCeE
Q 003231 60 VLDGKDIKTTFDEF-PYYLSERTRMLLTSAAYVHLKHSEISKHT-RNLSPASRTILLSGPAELYQQMLAKALAHFFESKL 137 (837)
Q Consensus 60 vv~~~~~~vsf~~f-pyylse~tk~~L~~~~~~hL~~~~~~~~~-~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~l 137 (837)
+.+|++|.-.++++ -+ -|+.|..|..|+|-|.+.-...... .+.....+.|||.||++.++++|||+||+.++.+|
T Consensus 59 ~~~p~~i~~~L~~~ViG--q~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIG--QERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred CCCHHHHHHHHhhHeeC--hHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 44455555555442 22 2889999999999887764321111 13444668899999999999999999999999999
Q ss_pred EEeeccccc
Q 003231 138 LLLDVNDFS 146 (837)
Q Consensus 138 l~ld~~~~~ 146 (837)
..+|.+.+.
T Consensus 137 ~~id~~~l~ 145 (412)
T PRK05342 137 AIADATTLT 145 (412)
T ss_pred eecchhhcc
Confidence 999988764
No 263
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.49 E-value=1e-06 Score=104.32 Aligned_cols=125 Identities=11% Similarity=0.103 Sum_probs=87.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccccH--HHH--------HHHHHHHHhcCCeEEEecc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAG--ASFINVSMSTITSKWFGEDE--KNV--------RALFTLAAKVSPTIIFVDE 626 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg--~~~i~v~~s~l~s~~~G~~e--~~l--------~~lf~~A~~~~psVLfIDE 626 (837)
..||+|.|++|+||++++++++..+. .||+.+..+--....+|... ..+ ..++..| ..+||||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe 101 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAM 101 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecC
Confidence 47899999999999999999999885 58888776554444555431 111 1111111 237999999
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHhhccc---------cccCCceEEEEEecCCC---CCCcHHHHHHHHHhhhcCCC
Q 003231 627 VDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL---------LTRNGERILVLAATNRP---FDLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 627 ID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~---------~~~~~~~vlVIaTTN~~---~~Ld~aL~rRF~~~I~~~~P 694 (837)
+..+-+ .++..|+..|+.. ...-+.++++|+|-|.. ..|++++++||+..+.++.|
T Consensus 102 ~n~~~~------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 102 AERLEP------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred cccCCH------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 998743 5666676666533 22334568899985432 45899999999999999988
Q ss_pred CHHH
Q 003231 695 SAEN 698 (837)
Q Consensus 695 ~~ee 698 (837)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7654
No 264
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.49 E-value=2.2e-07 Score=96.42 Aligned_cols=180 Identities=24% Similarity=0.357 Sum_probs=97.0
Q ss_pred ccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEec-ccccc----cc
Q 003231 528 GALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA---SFINVSM-STITS----KW 599 (837)
Q Consensus 528 iG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~---~~i~v~~-s~l~s----~~ 599 (837)
+|.+...+.|.+++.. .+...++|+||.|+|||+|++.+...+.- ..+.+.. ..... ..
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5666777777766643 24578999999999999999999998832 1222221 11000 00
Q ss_pred ------------------------------ccccHHHHHHHHHHHHhcC-CeEEEeccccccc-CCCCCcchHHHHHHHH
Q 003231 600 ------------------------------FGEDEKNVRALFTLAAKVS-PTIIFVDEVDSML-GQRTRVGEHEAMRKIK 647 (837)
Q Consensus 600 ------------------------------~G~~e~~l~~lf~~A~~~~-psVLfIDEID~L~-~~r~~~~~~~~~~~i~ 647 (837)
.......+..++....+.. ..||+|||++.+. ..... ..+.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~-------~~~~ 141 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED-------KDFL 141 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT-------HHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch-------HHHH
Confidence 0112344556666655443 4899999999997 22211 2444
Q ss_pred HHHHHhhccccccCCceEEEEEecCCC-----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc-C--CChhhHHH
Q 003231 648 NEFMTHWDGLLTRNGERILVLAATNRP-----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE-K--VEDLDFKE 719 (837)
Q Consensus 648 ~~Ll~~ld~~~~~~~~~vlVIaTTN~~-----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~-~--~~d~dl~~ 719 (837)
..+...++......+ ..+|+++++.. ..-...+..|+.. +.++..+.++..++++..+... . .++.+++.
T Consensus 142 ~~l~~~~~~~~~~~~-~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 219 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQN-VSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEE 219 (234)
T ss_dssp HHHHHHHHH----TT-EEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHH
T ss_pred HHHHHHHhhccccCC-ceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHH
Confidence 455555555333322 23334444320 1112234557755 8999999999999999876654 2 27888899
Q ss_pred HHHHcCCCCH
Q 003231 720 LAAMTEGYSG 729 (837)
Q Consensus 720 LA~~t~G~sg 729 (837)
+...+.|+.+
T Consensus 220 i~~~~gG~P~ 229 (234)
T PF01637_consen 220 IYSLTGGNPR 229 (234)
T ss_dssp HHHHHTT-HH
T ss_pred HHHHhCCCHH
Confidence 9999998644
No 265
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.48 E-value=1.7e-06 Score=94.95 Aligned_cols=61 Identities=23% Similarity=0.202 Sum_probs=45.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEee
Q 003231 69 TFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLD 141 (837)
Q Consensus 69 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld 141 (837)
||++|=+. ++.+..|..+.-..... ....+.+||+||+++++++||+++|++++.++..++
T Consensus 2 ~~~~~iG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 2 LLAEFIGQ--EKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CHHHHcCH--HHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 67888886 88888877766433222 133466999999999999999999999987765543
No 266
>PRK08181 transposase; Validated
Probab=98.48 E-value=3.3e-07 Score=98.76 Aligned_cols=71 Identities=24% Similarity=0.358 Sum_probs=50.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-cHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGE-DEKNVRALFTLAAKVSPTIIFVDEVDSML 631 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~-~e~~l~~lf~~A~~~~psVLfIDEID~L~ 631 (837)
..+++|+||||||||+||.++|.++ |..++.+++.++....... ........+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 4679999999999999999999765 7888889888876653211 111222333332 246799999998764
No 267
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.46 E-value=6.8e-07 Score=98.60 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=59.7
Q ss_pred CcEEEEEccchhHhhhc-HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQS-QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~-~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
.-.||||||||. |..+ +|+ |-|.+++ |-|.+|||||-+ -.+++..||..|-+ .++..+=+.++-.+.++
T Consensus 104 r~tiLflDEIHR-fnK~QQD~---lLp~vE~--G~iilIGATTEN---PsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 104 RRTILFLDEIHR-FNKAQQDA---LLPHVEN--GTIILIGATTEN---PSFELNPALLSRAR-VFELKPLSSEDIKKLLK 173 (436)
T ss_pred CceEEEEehhhh-cChhhhhh---hhhhhcC--CeEEEEeccCCC---CCeeecHHHhhhhh-eeeeecCCHHHHHHHHH
Confidence 359999999999 5555 566 6688997 999999999854 46899999999986 88999889998888888
Q ss_pred HHH
Q 003231 346 AKL 348 (837)
Q Consensus 346 ~~l 348 (837)
.-+
T Consensus 174 ra~ 176 (436)
T COG2256 174 RAL 176 (436)
T ss_pred HHH
Confidence 633
No 268
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.43 E-value=4.5e-06 Score=94.91 Aligned_cols=67 Identities=25% Similarity=0.444 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhcccccc--cccc-cccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 79 ERTRMLLTSAAYVHLKHSEI--SKHT-RNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 79 e~tk~~L~~~~~~hL~~~~~--~~~~-~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
|+.|..|.-|+|-|.+.-.. .... .+..-....|||.|||+.++++|||+||+.+++++..+|.+.+
T Consensus 83 e~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 83 EQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 88999999999999887432 1111 1123345789999999999999999999999999988887665
No 269
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.43 E-value=3.2e-06 Score=97.99 Aligned_cols=192 Identities=20% Similarity=0.251 Sum_probs=110.0
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK--- 598 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~--- 598 (837)
..++|.......+.+.+.... .....+|++|++||||+++|+++.... +.+|+.++|..+...
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~ 211 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIA-----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE 211 (457)
T ss_pred cceecccHHHhHHHHHHHHHc-----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH
Confidence 346776665555554443311 234579999999999999999998765 579999999887433
Q ss_pred --cccccHHH-------HHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------cCC
Q 003231 599 --WFGEDEKN-------VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-------RNG 662 (837)
Q Consensus 599 --~~G~~e~~-------l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~ 662 (837)
.+|..... ....+.. ...++||||||+.|.. .+...|+..++.... ...
T Consensus 212 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~------------~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 212 SELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPL------------VLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCH------------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 22221100 0011222 2347999999999843 233444444432211 111
Q ss_pred ceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHHH----HHHHHHhhc---------CCChhhHHHHHH
Q 003231 663 ERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENREM----ILKTLLAKE---------KVEDLDFKELAA 722 (837)
Q Consensus 663 ~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~~----IL~~~l~~~---------~~~d~dl~~LA~ 722 (837)
.++.||+|||.. ..+.+.+..|+ ..+.+..|...+|.. ++..++.+. .+++..+..|..
T Consensus 277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 355 (457)
T PRK11361 277 VDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTA 355 (457)
T ss_pred eceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHc
Confidence 247889988864 24666677777 346666777666643 334443321 123333344433
Q ss_pred HcCCCCHHHHHHHHHHHHHHH
Q 003231 723 MTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 723 ~t~G~sg~DL~~L~~~Aa~~a 743 (837)
..=--.-++|++++..|+..+
T Consensus 356 ~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 356 WSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred CCCCCcHHHHHHHHHHHHHhC
Confidence 321124578888887776543
No 270
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.42 E-value=5.4e-07 Score=99.86 Aligned_cols=70 Identities=24% Similarity=0.483 Sum_probs=49.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc---cHHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGE---DEKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~---~e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
..+++|+||||||||+||.++|+++ |..++.+++.++....... ........+... ....+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 3789999999999999999999987 7889999988876543211 001111112222 23579999999765
No 271
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.41 E-value=6.3e-06 Score=95.64 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=56.9
Q ss_pred CcEEEEEccchhHhhhc----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc--eeeeCCCChHHH
Q 003231 267 SSVILYLRDVDKLLFQS----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY--NLEVKLPEDETH 340 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~--~IeI~~P~~e~r 340 (837)
.+-+|+|||||. +.+. .+++++|....++ |..+||+|+..- .....++++|..||.+ .++|++|+.++|
T Consensus 211 ~~dlLiiDDi~~-l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p--~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 211 SVDVLLIDDIQF-LAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPP--KELPGLEERLRSRFEWGLTVDIEPPDLETR 285 (450)
T ss_pred cCCEEEEehhhh-hcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCH--HHHHHHHHHHHhHhcCCeeEEecCCCHHHH
Confidence 356899999998 4443 3588888888886 666777663311 1112267889999964 799999999999
Q ss_pred HHHHHHHHH
Q 003231 341 LVNWKAKLE 349 (837)
Q Consensus 341 l~Ilk~~l~ 349 (837)
..|++....
T Consensus 286 ~~il~~~~~ 294 (450)
T PRK00149 286 IAILKKKAE 294 (450)
T ss_pred HHHHHHHHH
Confidence 999998543
No 272
>PRK06921 hypothetical protein; Provisional
Probab=98.36 E-value=1.1e-06 Score=94.74 Aligned_cols=69 Identities=25% Similarity=0.328 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEeccccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDS 629 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~ 629 (837)
...+++|+||||+|||+|+.++|+++ |..+++++..++....... .......+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 35689999999999999999999986 6777888876654432111 01111222221 2458999999954
No 273
>PF13173 AAA_14: AAA domain
Probab=98.33 E-value=5.4e-07 Score=86.18 Aligned_cols=69 Identities=25% Similarity=0.441 Sum_probs=48.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAG--ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg--~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
+.++|+||+|||||++++.+++.+. -+++.+++.+.......... +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 78888888775442111111 222222222225689999999987
No 274
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.32 E-value=6.5e-07 Score=86.76 Aligned_cols=60 Identities=27% Similarity=0.569 Sum_probs=44.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG---ASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSML 631 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~ 631 (837)
....|||+|++||||+++|+++....+ .+|+.++|..+. ..+++.+ ..+.|||+|+|.|.
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC
Confidence 346799999999999999999998875 366767776543 2344443 56899999999984
No 275
>PRK06526 transposase; Provisional
Probab=98.32 E-value=6.8e-07 Score=95.71 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=48.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-cHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGE-DEKNVRALFTLAAKVSPTIIFVDEVDSML 631 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~-~e~~l~~lf~~A~~~~psVLfIDEID~L~ 631 (837)
...+++|+||||||||+||.+++.++ |..++.+++.++....... ....+...+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 45689999999999999999998876 7777777777665543211 111122222222 346899999999764
No 276
>PRK15115 response regulator GlrR; Provisional
Probab=98.32 E-value=9.3e-06 Score=93.84 Aligned_cols=168 Identities=21% Similarity=0.317 Sum_probs=98.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccccHHH-------HHHHHHHHHhcCCeEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW-----FGEDEKN-------VRALFTLAAKVSPTIIF 623 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~-----~G~~e~~-------l~~lf~~A~~~~psVLf 623 (837)
...++|+|++|||||++|+++.... +.+|+.++|..+.... +|..... ...++. ....++||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEE
Confidence 3569999999999999999998875 5799999998864332 1111100 000111 22347999
Q ss_pred ecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------cCCceEEEEEecCCC-------CCCcHHHHHHHHHhh
Q 003231 624 VDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-------RNGERILVLAATNRP-------FDLDEAIIRRFERRI 689 (837)
Q Consensus 624 IDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I 689 (837)
||||+.|.. .....|+..++.... ....++.+|+||+.. ..+.+.+..|+ ..+
T Consensus 234 l~~i~~l~~------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~ 300 (444)
T PRK15115 234 LDEIGDMPA------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVV 300 (444)
T ss_pred EEccccCCH------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-cee
Confidence 999999843 233344444432211 111257888888763 23445555566 345
Q ss_pred hcCCCCHHHHHH----HHHHHHhhc----C-----CChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003231 690 MVGLPSAENREM----ILKTLLAKE----K-----VEDLDFKELAAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 690 ~~~~P~~eer~~----IL~~~l~~~----~-----~~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
.+..|...+|.+ +++.++... + +++..+..|....=.-+.++|++++..|+..
T Consensus 301 ~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred eecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 666777777642 344554431 1 2444455555443112457777777776654
No 277
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.31 E-value=3.8e-06 Score=97.49 Aligned_cols=193 Identities=18% Similarity=0.276 Sum_probs=109.9
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc---
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW--- 599 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~--- 599 (837)
.++|.......+.+.+.. +. .....+++.|.+||||+++|+++.... +.+|+.++|..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~-~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-LS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred ceeecCHHHHHHHHHHHH-Hh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 367777666666655543 11 233579999999999999999998775 5799999998874322
Q ss_pred --ccccHHHHHHHH----HHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------cCCceEE
Q 003231 600 --FGEDEKNVRALF----TLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-------RNGERIL 666 (837)
Q Consensus 600 --~G~~e~~l~~lf----~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~~vl 666 (837)
+|.......... ........++||||||+.|.. .+...|+..++.... .....+.
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~------------~~q~~ll~~l~~~~~~~~~~~~~~~~~~r 271 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL------------DAQTRLLRVLADGEFYRVGGRTPIKVDVR 271 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH------------HHHHHHHHHHhcCcEEECCCCceeeeeeE
Confidence 222111000000 001122358999999998843 223334443332211 1112467
Q ss_pred EEEecCCC-------CCCcHHHHHHHHHhhhcCCCCH----HHHHHHHHHHHhhc----C-----CChhhHHHHHHHcCC
Q 003231 667 VLAATNRP-------FDLDEAIIRRFERRIMVGLPSA----ENREMILKTLLAKE----K-----VEDLDFKELAAMTEG 726 (837)
Q Consensus 667 VIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~----eer~~IL~~~l~~~----~-----~~d~dl~~LA~~t~G 726 (837)
||+||+.. ..+.+.+..|+. .+.+..|.. ++...+++.++... + +++..+..|... +
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~ 348 (463)
T TIGR01818 272 IVAATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--R 348 (463)
T ss_pred EEEeCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--C
Confidence 88888764 356667777773 344444543 45555555554432 1 234444444443 2
Q ss_pred CC--HHHHHHHHHHHHHHHH
Q 003231 727 YS--GSDLKNLCVTAAYRPV 744 (837)
Q Consensus 727 ~s--g~DL~~L~~~Aa~~av 744 (837)
|. -++|++++..|+..+-
T Consensus 349 wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred CCChHHHHHHHHHHHHHhCC
Confidence 33 4788888888776553
No 278
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.30 E-value=1.3e-06 Score=96.10 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=69.3
Q ss_pred HHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-- 583 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-- 583 (837)
...+++..-+|..-...+|+++...+.-...+...+...+ +.+... ...++++|+||+|||||+||.++|+++
T Consensus 108 ~~~~i~~a~~p~~~~~atf~~~~~~~~~~~~~~~~~~~fi---~~~~~~--~~~~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 108 IKKRIQSIYMPKDLLQASLADIDLDDRDRLDALMAALDFL---EAYPPG--EKVKGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred HHHHHHHcCCCHhHhcCcHHHhcCCChHHHHHHHHHHHHH---HHhhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4444555555554445688887644422222222221111 111111 245799999999999999999999998
Q ss_pred -CCcEEEEecccccccccccc-HHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 584 -GASFINVSMSTITSKWFGED-EKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 584 -g~~~i~v~~s~l~s~~~G~~-e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
|.++..+.++++........ ...+...+.... ...+|+|||+..-
T Consensus 183 ~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 183 KGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred cCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 78888888887765432110 111223333322 4579999999753
No 279
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.30 E-value=4.8e-07 Score=91.78 Aligned_cols=71 Identities=31% Similarity=0.494 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-cHHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGE-DEKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~-~e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
...+++|+||||||||+||.+++.++ |.++..++.+++....... ........+.... ...+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 45789999999999999999999877 8899999998886653211 1111223333333 3579999999643
No 280
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1e-05 Score=93.98 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=57.2
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
.-||||||+|.+ . .+..+.|-+.++..++.+++|++++ ++..++++|..|+. .+++.+|+.++...+++..
T Consensus 118 ~kVvIIDE~h~L-t--~~a~~~LLk~LE~p~~~vv~Ilatt-----n~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i 188 (472)
T PRK14962 118 YKVYIIDEVHML-T--KEAFNALLKTLEEPPSHVVFVLATT-----NLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEV 188 (472)
T ss_pred eEEEEEEChHHh-H--HHHHHHHHHHHHhCCCcEEEEEEeC-----ChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHH
Confidence 459999999995 2 2345556777888888999888755 24478999999996 9999999999988888865
Q ss_pred H
Q 003231 348 L 348 (837)
Q Consensus 348 l 348 (837)
.
T Consensus 189 ~ 189 (472)
T PRK14962 189 A 189 (472)
T ss_pred H
Confidence 4
No 281
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=8.4e-06 Score=88.42 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=80.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--------ccccccc-cc----ccHHHHHHHHHHHHhc----CC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSM--------STITSKW-FG----EDEKNVRALFTLAAKV----SP 619 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~--------s~l~s~~-~G----~~e~~l~~lf~~A~~~----~p 619 (837)
+.++.+||+||+|+||+.+|.++|..+-+.--.-.| +++.--. .| -.-..++.+...+... +.
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 457789999999999999999999988432000001 1110000 01 1233455665555443 34
Q ss_pred eEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCC
Q 003231 620 TIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 620 sVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P 694 (837)
.|++||++|.|.. ...|.|+..++. ++.++++|..|+.+..+.|.+++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt~------------~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMTL------------DAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcCH------------HHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 6999999999843 344666666554 4566888888899999999999999 66667554
No 282
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.28 E-value=3.1e-06 Score=90.64 Aligned_cols=71 Identities=28% Similarity=0.440 Sum_probs=50.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHH-H-HHHHHHHHHhcCCeEEEecccccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEK-N-VRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~~e~-~-l~~lf~~A~~~~psVLfIDEID~L 630 (837)
.+.+++|+||||||||+||.|+|+++ |..++.++.++++...-..-.. . -..+.... ....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 45789999999999999999999988 8899999999887753221110 1 11122212 23579999999765
No 283
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.26 E-value=9.2e-06 Score=93.22 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=58.3
Q ss_pred CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 266 TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
.+..||||||||.+-.. ..+.|-+.++. |.+++||+||.. ....++.+|..|+. .+.+.+|++++...+++
T Consensus 91 g~~~vL~IDEi~~l~~~---~q~~LL~~le~--~~iilI~att~n---~~~~l~~aL~SR~~-~~~~~~ls~e~i~~lL~ 161 (413)
T PRK13342 91 GRRTILFIDEIHRFNKA---QQDALLPHVED--GTITLIGATTEN---PSFEVNPALLSRAQ-VFELKPLSEEDIEQLLK 161 (413)
T ss_pred CCceEEEEechhhhCHH---HHHHHHHHhhc--CcEEEEEeCCCC---hhhhccHHHhccce-eeEeCCCCHHHHHHHHH
Confidence 36789999999995332 23345566775 899999997643 24568899999995 99999999999999998
Q ss_pred HHHHH
Q 003231 346 AKLEE 350 (837)
Q Consensus 346 ~~l~~ 350 (837)
..+.+
T Consensus 162 ~~l~~ 166 (413)
T PRK13342 162 RALED 166 (413)
T ss_pred HHHHH
Confidence 75543
No 284
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=3.1e-06 Score=80.35 Aligned_cols=73 Identities=23% Similarity=0.384 Sum_probs=48.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEeccccccc--------------ccc--ccHHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA--------GASFINVSMSTITSK--------------WFG--EDEKNVRALFTLA 614 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el--------g~~~i~v~~s~l~s~--------------~~G--~~e~~l~~lf~~A 614 (837)
.+.++++||||+|||++++.++..+ ..+++.+++...... ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4679999999999999999999988 788888887654321 011 1222334444444
Q ss_pred HhcCCeEEEeccccccc
Q 003231 615 AKVSPTIIFVDEVDSML 631 (837)
Q Consensus 615 ~~~~psVLfIDEID~L~ 631 (837)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55554699999999874
No 285
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.25 E-value=1.9e-05 Score=87.11 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=59.1
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.+-||+|||+|.+ +..++.+.|+..++..++++.+|.+ +++...++++|.+||. .+.++.|+.+++..+++.
T Consensus 100 ~~~vliiDe~d~l--~~~~~~~~L~~~le~~~~~~~~Ilt-----~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRL--GLADAQRHLRSFMEAYSKNCSFIIT-----ANNKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccc--cCHHHHHHHHHHHHhcCCCceEEEE-----cCChhhchHHHHhhce-EEEeCCCCHHHHHHHHHH
Confidence 5679999999984 2233556677778887788777765 3445678999999996 999999999999999987
Q ss_pred HHHHH
Q 003231 347 KLEED 351 (837)
Q Consensus 347 ~l~~d 351 (837)
.+.+.
T Consensus 172 ~~~~~ 176 (316)
T PHA02544 172 MIVRC 176 (316)
T ss_pred HHHHH
Confidence 54433
No 286
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.24 E-value=3.4e-05 Score=88.09 Aligned_cols=212 Identities=17% Similarity=0.267 Sum_probs=116.7
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
.+.|.++++|. +.+++.-+..-+..++.++... ..+... -+.+-+||+||+||||||.++.+|++
T Consensus 69 ~elW~eKy~P~---------t~eeLAVHkkKI~eVk~WL~~~----~~~~~~--l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 69 FELWVEKYKPR---------TLEELAVHKKKISEVKQWLKQV----AEFTPK--LGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred cchhHHhcCcc---------cHHHHhhhHHhHHHHHHHHHHH----HHhccC--CCceEEEEeCCCCCCchhHHHHHHHh
Confidence 34577777776 7888888877777777777521 111110 23456899999999999999999999
Q ss_pred hCCcEEEEec-------ccccccc------ccccHHHHHHHHHHHHh------------cCCeEEEecccccccCCCCCc
Q 003231 583 AGASFINVSM-------STITSKW------FGEDEKNVRALFTLAAK------------VSPTIIFVDEVDSMLGQRTRV 637 (837)
Q Consensus 583 lg~~~i~v~~-------s~l~s~~------~G~~e~~l~~lf~~A~~------------~~psVLfIDEID~L~~~r~~~ 637 (837)
+|+.+++..- +.+.... +...-.........+.+ ..+.+|||||+-..+...
T Consensus 134 lg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d--- 210 (634)
T KOG1970|consen 134 LGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD--- 210 (634)
T ss_pred hCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---
Confidence 9999988552 1111111 11111111222333322 135699999997654321
Q ss_pred chHHHHHHHHHHHHHhhccccccCCceEEEEEecCC--CCCCcHHHH--------HHHHHhhhcCCCCHHHHHHHHHHHH
Q 003231 638 GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR--PFDLDEAII--------RRFERRIMVGLPSAENREMILKTLL 707 (837)
Q Consensus 638 ~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~--~~~Ld~aL~--------rRF~~~I~~~~P~~eer~~IL~~~l 707 (837)
..+..+.++..+ -.. +.--+|++.|+. ++..++..+ -|. ..|.|++-...-..+.|+.++
T Consensus 211 -~~~~f~evL~~y----~s~----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric 280 (634)
T KOG1970|consen 211 -DSETFREVLRLY----VSI----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRIC 280 (634)
T ss_pred -hHHHHHHHHHHH----Hhc----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHH
Confidence 122222232222 111 111144444433 222222111 144 456788888888888888888
Q ss_pred hhcCC--Ch---hhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003231 708 AKEKV--ED---LDFKELAAMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 708 ~~~~~--~d---~dl~~LA~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
..+.. .. -+...+-..+.| +++||+.++..-.+.+
T Consensus 281 ~~e~~~~s~~k~~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 281 RIEANKKSGIKVPDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred HHhcccccCCcCchhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 76544 21 123334444443 4558888877665554
No 287
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=3.3e-05 Score=84.00 Aligned_cols=171 Identities=14% Similarity=0.104 Sum_probs=104.5
Q ss_pred cchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE----------------EEec
Q 003231 529 ALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFI----------------NVSM 592 (837)
Q Consensus 529 G~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i----------------~v~~ 592 (837)
.++.+++.++.++... +.++.+||+|| +||+++|+.+|..+-+.-- .-+-
T Consensus 6 ~q~~~~~~L~~~~~~~------------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQD------------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHcC------------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3456677777766542 56788999996 6899999999987732110 0001
Q ss_pred ccccccc-cc--ccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceE
Q 003231 593 STITSKW-FG--EDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERI 665 (837)
Q Consensus 593 s~l~s~~-~G--~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~v 665 (837)
+++.--. .| -.-..++.+...+... ...|++||++|+|.. ...|.|+..++. ++.++
T Consensus 72 PD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~------------~AaNaLLKtLEE----Pp~~t 135 (290)
T PRK07276 72 SDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV------------NAANSLLKVIEE----PQSEI 135 (290)
T ss_pred CCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH------------HHHHHHHHHhcC----CCCCe
Confidence 1111000 01 1234566666555433 347999999999843 344667666654 45568
Q ss_pred EEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 666 LVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 666 lVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
++|.+|+.+..+-|.+++|+ ..+.|+. +.+...+++ ...+++......++. ..| +.+....+..
T Consensus 136 ~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L----~~~g~~~~~a~~la~-~~~-s~~~A~~l~~ 199 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLL----EQKGLLKTQAELLAK-LAQ-STSEAEKLAQ 199 (290)
T ss_pred EEEEEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHH----HHcCCChHHHHHHHH-HCC-CHHHHHHHhC
Confidence 88888888999999999999 7778865 444444444 344554433344444 444 5555555553
No 288
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.24 E-value=1.7e-05 Score=92.30 Aligned_cols=171 Identities=23% Similarity=0.296 Sum_probs=98.4
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eeccccccc--ccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFIN-VSMSTITSK--WFGED 603 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~-v~~s~l~s~--~~G~~ 603 (837)
|.|++++|+-|.-.+... .+.+.-+....+..-+|||+|.||||||.+.+.+++.+..-.+. -..+.-++- |+-..
T Consensus 431 Iye~edvKkglLLqLfGG-t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd 509 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFGG-TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD 509 (804)
T ss_pred hhcccchhhhHHHHHhcC-CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec
Confidence 899999999886655442 23332233334556789999999999999999999877332221 001100000 00000
Q ss_pred HHHHHHHHHHH---HhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHH------HhhccccccCCceEEEEEecCCC
Q 003231 604 EKNVRALFTLA---AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM------THWDGLLTRNGERILVLAATNRP 674 (837)
Q Consensus 604 e~~l~~lf~~A---~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll------~~ld~~~~~~~~~vlVIaTTN~~ 674 (837)
.. .+++.-+. -....+|-.|||+|+|-. ..+.++.+.| ...-|+...-+.+.-|||++|+.
T Consensus 510 ~d-tkqlVLesGALVLSD~GiCCIDEFDKM~d---------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~ 579 (804)
T KOG0478|consen 510 PD-TRQLVLESGALVLSDNGICCIDEFDKMSD---------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPI 579 (804)
T ss_pred Cc-cceeeeecCcEEEcCCceEEchhhhhhhH---------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccc
Confidence 00 00111110 112357899999999832 1122222222 22234445556678899999963
Q ss_pred -------------CCCcHHHHHHHHHhh-hcCCCCHHHHHHHHHHHHh
Q 003231 675 -------------FDLDEAIIRRFERRI-MVGLPSAENREMILKTLLA 708 (837)
Q Consensus 675 -------------~~Ld~aL~rRF~~~I-~~~~P~~eer~~IL~~~l~ 708 (837)
-.|+|.|++|||.++ .++.||...-..+..++..
T Consensus 580 ~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 580 RSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred cccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 157899999998776 4577777655555555544
No 289
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.21 E-value=1.6e-06 Score=93.75 Aligned_cols=141 Identities=21% Similarity=0.377 Sum_probs=78.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC-c--EEEEeccccccccccccHHHHHHHHHHH-----------HhcCCeEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGA-S--FINVSMSTITSKWFGEDEKNVRALFTLA-----------AKVSPTIIF 623 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~-~--~i~v~~s~l~s~~~G~~e~~l~~lf~~A-----------~~~~psVLf 623 (837)
..+++||+||+|||||++++.+-..+.- . ...++++.... ...+..+++.. ...+..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 3578999999999999999988776632 2 33455543211 11222221111 011236999
Q ss_pred ecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCC------ceEEEEEecCCCC---CCcHHHHHHHHHhhhcCCC
Q 003231 624 VDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNG------ERILVLAATNRPF---DLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 624 IDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~------~~vlVIaTTN~~~---~Ld~aL~rRF~~~I~~~~P 694 (837)
|||++.-.+...+ .... -.++.+++.. .+...... .++.+||+++.+. .+++.++|.| .++.++.|
T Consensus 106 iDDlN~p~~d~yg--tq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p 180 (272)
T PF12775_consen 106 IDDLNMPQPDKYG--TQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYP 180 (272)
T ss_dssp EETTT-S---TTS----HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----
T ss_pred ecccCCCCCCCCC--CcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCC
Confidence 9999965443332 2221 2334444332 12222211 3578889888642 4677777777 67889999
Q ss_pred CHHHHHHHHHHHHhh
Q 003231 695 SAENREMILKTLLAK 709 (837)
Q Consensus 695 ~~eer~~IL~~~l~~ 709 (837)
+.+....|+..++..
T Consensus 181 ~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 181 SDESLNTIFSSILQS 195 (272)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999999888764
No 290
>PRK09183 transposase/IS protein; Provisional
Probab=98.21 E-value=2.9e-06 Score=91.28 Aligned_cols=72 Identities=24% Similarity=0.407 Sum_probs=49.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-cHHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGE-DEKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~-~e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
...+++|+||||||||+||.+++..+ |..+..+++.++...+... ....+..++... ...+.+++|||++.+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 45689999999999999999997664 7788888877765432211 111233444433 235689999999865
No 291
>PRK04195 replication factor C large subunit; Provisional
Probab=98.20 E-value=3.8e-05 Score=89.90 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=103.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchh
Q 003231 69 TFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLK 148 (837)
Q Consensus 69 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~ 148 (837)
+|+++-+. +..+..|.+.+-.+.+ + ...+.+||+||+++++++||+|||++++..++.++.+++...
T Consensus 12 ~l~dlvg~--~~~~~~l~~~l~~~~~-------g----~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~ 78 (482)
T PRK04195 12 TLSDVVGN--EKAKEQLREWIESWLK-------G----KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA 78 (482)
T ss_pred CHHHhcCC--HHHHHHHHHHHHHHhc-------C----CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH
Confidence 47776664 8888888877644441 1 126789999999999999999999999998888887665310
Q ss_pred hhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccccc
Q 003231 149 MQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSIS 228 (837)
Q Consensus 149 ~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (837)
..+.++ .+...
T Consensus 79 --------------------~~i~~~---i~~~~---------------------------------------------- 89 (482)
T PRK04195 79 --------------------DVIERV---AGEAA---------------------------------------------- 89 (482)
T ss_pred --------------------HHHHHH---HHHhh----------------------------------------------
Confidence 001111 00000
Q ss_pred CCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcH-HHHHHHHHHHHhccCCEEEEecc
Q 003231 229 SLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQ-RFYNLLDKLLKKLSGSVLVLGSR 307 (837)
Q Consensus 229 ~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~-~~~~~lk~~l~~l~g~v~iiGs~ 307 (837)
....++ ...+-||+|||+|.+..... ...+.|...+..-...++|++.
T Consensus 90 -----------------------~~~sl~-------~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n- 138 (482)
T PRK04195 90 -----------------------TSGSLF-------GARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTAN- 138 (482)
T ss_pred -----------------------ccCccc-------CCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEecc-
Confidence 000011 02578999999999543221 2445555666665566777642
Q ss_pred cccCCCCCCchhH-HHHccCCceeeeCCCChHHHHHHHHHHHH
Q 003231 308 MLEPEDDCRDVDE-RLTILFPYNLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 308 ~~~~~~~~~~~d~-al~rrF~~~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
+...... .|.++.. .|++++|+.++...+|+..+.
T Consensus 139 ------~~~~~~~k~Lrsr~~-~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 139 ------DPYDPSLRELRNACL-MIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred ------CccccchhhHhccce-EEEecCCCHHHHHHHHHHHHH
Confidence 3334444 6666764 999999999999999987653
No 292
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.19 E-value=3e-05 Score=82.85 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=65.4
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CcEEE--Eecccccc-c
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---G--ASFIN--VSMSTITS-K 598 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g--~~~i~--v~~s~l~s-~ 598 (837)
+.||.-+++.|..++...+.++. .+.|--+=|+|+|||||..+++.||+.+ | -+++. +..-.+.. +
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 89999999999999987655544 2334456799999999999999999876 2 12211 10001100 0
Q ss_pred cc-cccHHHHHHHHHHHHhcCCeEEEecccccccC
Q 003231 599 WF-GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 599 ~~-G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~ 632 (837)
++ ...++..+.+...+..++.++.++||+|+|.+
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 11 11223334555566778889999999999954
No 293
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.18 E-value=0.00015 Score=81.43 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHH-HHHHHHHH-HHhcc-CCEEEEecccccCCCCCCchhHHHHccC-C
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQSQR-FYNLLDKL-LKKLS-GSVLVLGSRMLEPEDDCRDVDERLTILF-P 327 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~-~~~~lk~~-l~~l~-g~v~iiGs~~~~~~~~~~~~d~al~rrF-~ 327 (837)
+++.+++.+.. ..+|+||+|||+|.+....++ ++++++-. ...++ .+|.+|+.+..- .-...++.++.++| +
T Consensus 116 ~~~~l~~~l~~--~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~--~~~~~l~~~~~s~~~~ 191 (365)
T TIGR02928 116 VFRRLYKELNE--RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL--KFRENLDPRVKSSLCE 191 (365)
T ss_pred HHHHHHHHHHh--cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc--chHhhcCHHHhccCCc
Confidence 35555555542 346899999999997633344 44443210 12333 467777753211 11124677887777 4
Q ss_pred ceeeeCCCChHHHHHHHHHHHH
Q 003231 328 YNLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 328 ~~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
..|.+++++.++...|++..++
T Consensus 192 ~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 192 EEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ceeeeCCCCHHHHHHHHHHHHH
Confidence 6799999999999999997653
No 294
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.18 E-value=1.9e-05 Score=85.82 Aligned_cols=152 Identities=21% Similarity=0.335 Sum_probs=99.8
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK 598 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~ 598 (837)
..|+.|++.....+.+.+-.... . --...+||.|.+||||-.+|++..... ..||+.++|..+...
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~----A-------mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~ 269 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKL----A-------MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED 269 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHh----h-------ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh
Confidence 47888888877666554433220 0 123459999999999999999987665 689999999877543
Q ss_pred -----cccccH--HHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc-ccCC------ce
Q 003231 599 -----WFGEDE--KNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL-TRNG------ER 664 (837)
Q Consensus 599 -----~~G~~e--~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~-~~~~------~~ 664 (837)
.+|... ..-..+|+.|.. +.+|+|||..|.+ ++...|+..+.+.. ..-+ -.
T Consensus 270 ~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp------------~lQaKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 270 AAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSP------------RLQAKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred HhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCH------------HHHHHHHHHhcCCceeecCCcceEEEE
Confidence 444433 334567887766 8999999988743 44444554444332 2111 26
Q ss_pred EEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHH
Q 003231 665 ILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENRE 700 (837)
Q Consensus 665 vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~ 700 (837)
|.|||||..+ ..+.+.+.-|+ .++.+..|...+|.
T Consensus 335 VRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~ 376 (511)
T COG3283 335 VRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERP 376 (511)
T ss_pred EEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCc
Confidence 8999999764 23445555576 56677777666553
No 295
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.17 E-value=1.5e-05 Score=84.06 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=78.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG 638 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~ 638 (837)
..+-.++||+|||||.+++.+|+.+|.+++.++|++-.+ ...+.++|.-+... .+.+++||+++|-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~------- 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLS------- 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS-------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhhh-------
Confidence 356678999999999999999999999999999988543 34566777766654 4899999999883
Q ss_pred hHHHHHHHHHHHHHhhccccccC------------CceEEEEEecCCC----CCCcHHHHHHHHHhhhcCCCCHHHHHHH
Q 003231 639 EHEAMRKIKNEFMTHWDGLLTRN------------GERILVLAATNRP----FDLDEAIIRRFERRIMVGLPSAENREMI 702 (837)
Q Consensus 639 ~~~~~~~i~~~Ll~~ld~~~~~~------------~~~vlVIaTTN~~----~~Ld~aL~rRF~~~I~~~~P~~eer~~I 702 (837)
.+.+.-+.+++....+.+.... +...-++.|.|.. ..+++.++.-| +.+.+..||.....
T Consensus 98 -~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~-- 173 (231)
T PF12774_consen 98 -EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIA-- 173 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHH--
T ss_pred -HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHH--
Confidence 2233222222222222111111 1124455566643 56888887777 77888888876544
Q ss_pred HHHHHhhcCC
Q 003231 703 LKTLLAKEKV 712 (837)
Q Consensus 703 L~~~l~~~~~ 712 (837)
+.++...++
T Consensus 174 -ei~L~s~GF 182 (231)
T PF12774_consen 174 -EILLLSQGF 182 (231)
T ss_dssp -HHHHHCCCT
T ss_pred -HHHHHHcCc
Confidence 444555554
No 296
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.13 E-value=3.3e-05 Score=88.47 Aligned_cols=78 Identities=26% Similarity=0.418 Sum_probs=55.6
Q ss_pred cEEEEEccchhHhhhc----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc--eeeeCCCChHHHH
Q 003231 268 SVILYLRDVDKLLFQS----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY--NLEVKLPEDETHL 341 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~--~IeI~~P~~e~rl 341 (837)
+-+|+|||+|. +.+. .+++++|..+.++ |..+||+++.. ......++++|..||.+ .|+|++|+.++|.
T Consensus 200 ~dlLiiDDi~~-l~~~~~~~~~l~~~~n~~~~~--~~~iiits~~~--p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 200 VDLLLIDDIQF-LAGKERTQEEFFHTFNALHEN--GKQIVLTSDRP--PKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred CCEEEEehhhh-hcCCHHHHHHHHHHHHHHHHC--CCCEEEecCCC--HHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 35899999998 4443 3488888877775 55566665211 11123367888889964 7999999999999
Q ss_pred HHHHHHHHH
Q 003231 342 VNWKAKLEE 350 (837)
Q Consensus 342 ~Ilk~~l~~ 350 (837)
.||+..+..
T Consensus 275 ~il~~~~~~ 283 (405)
T TIGR00362 275 AILQKKAEE 283 (405)
T ss_pred HHHHHHHHH
Confidence 999976543
No 297
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.12 E-value=1.4e-05 Score=92.01 Aligned_cols=155 Identities=17% Similarity=0.318 Sum_probs=89.0
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW---- 599 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~---- 599 (837)
++|.......+...+... ......++++|.+||||+++|+++.... +.+|+.++|..+....
T Consensus 141 lig~s~~~~~~~~~i~~~-----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALV-----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred eEecCHHHHHHHHHHhhc-----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 455555555554444321 1234679999999999999999998665 5799999998764332
Q ss_pred -ccccHHHH-------HHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc-------CCce
Q 003231 600 -FGEDEKNV-------RALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR-------NGER 664 (837)
Q Consensus 600 -~G~~e~~l-------~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~-------~~~~ 664 (837)
+|...... ...+. ....++||||||+.|.. .....++..++..... ...+
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~~------------~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDISP------------MMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCCH------------HHHHHHHHHHccCcEEeCCCCceeeec
Confidence 22111100 00111 22468999999999853 2233344444332111 1124
Q ss_pred EEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHHHHH----HHHHHHHh
Q 003231 665 ILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAENRE----MILKTLLA 708 (837)
Q Consensus 665 vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~eer~----~IL~~~l~ 708 (837)
+.+|+||+.. ..+.+.+..|+ ..+.+..|...+|. .+++.++.
T Consensus 275 ~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~~Di~~l~~~~l~ 328 (441)
T PRK10365 275 VRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRREDIPLLAGHFLQ 328 (441)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhcchhHHHHHHHHHH
Confidence 6678777653 23555566666 44566667666554 34455544
No 298
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.11 E-value=1.9e-05 Score=85.07 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=52.6
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhc----------------cCCEEEEecccccCCCCCCchhHHHHccCCcee
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKL----------------SGSVLVLGSRMLEPEDDCRDVDERLTILFPYNL 330 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l----------------~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~I 330 (837)
++-+|+||||+. + ..++.+.|...|+.- ..+.+||.+..-..+.-..+.+++|.+|| ..+
T Consensus 105 ~g~~lllDEi~r-~--~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i 180 (262)
T TIGR02640 105 EGFTLVYDEFTR-S--KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRL-ITI 180 (262)
T ss_pred cCCEEEEcchhh-C--CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhc-EEE
Confidence 457999999999 2 245666676777641 01334444322222222345689999999 599
Q ss_pred eeCCCChHHHHHHHHHH
Q 003231 331 EVKLPEDETHLVNWKAK 347 (837)
Q Consensus 331 eI~~P~~e~rl~Ilk~~ 347 (837)
.|..|+.+.-.+|++.+
T Consensus 181 ~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 181 FMDYPDIDTETAILRAK 197 (262)
T ss_pred ECCCCCHHHHHHHHHHh
Confidence 99999999999999975
No 299
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.11 E-value=1.9e-05 Score=94.00 Aligned_cols=175 Identities=23% Similarity=0.293 Sum_probs=98.6
Q ss_pred cccchHHHHHHHHHHHcccCCchhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eeccc---ccccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFK-GGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFIN-VSMST---ITSKWFG 601 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~-~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~-v~~s~---l~s~~~G 601 (837)
|.|++++|+.|.-.+..+... ... +..++..-++||.|.||||||.|.+.+++.+...++. -.++. |.....-
T Consensus 288 IyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~r 365 (682)
T COG1241 288 IYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVR 365 (682)
T ss_pred ccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEE
Confidence 999999999987666443221 111 1223445689999999999999999999877443322 22211 1110000
Q ss_pred ccHHHHHHHHHHH---HhcCCeEEEecccccccCCCCCcchHHHHHHHH-HHHHHhh-ccccccCCceEEEEEecCCCC-
Q 003231 602 EDEKNVRALFTLA---AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIK-NEFMTHW-DGLLTRNGERILVLAATNRPF- 675 (837)
Q Consensus 602 ~~e~~l~~lf~~A---~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~-~~Ll~~l-d~~~~~~~~~vlVIaTTN~~~- 675 (837)
... .....-.+ -...++|.+|||+|+|-.. ...++-..+ ++.+..- -|+...-+.+.-|+|++|+.+
T Consensus 366 d~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~~-----dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~G 438 (682)
T COG1241 366 DKV--TGEWVLEAGALVLADGGVCCIDEFDKMNEE-----DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFG 438 (682)
T ss_pred ccC--CCeEEEeCCEEEEecCCEEEEEeccCCChH-----HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCC
Confidence 000 00000000 0123589999999988321 111111111 1111100 122223345678899999854
Q ss_pred ------------CCcHHHHHHHHHhhhc-CCCCHHHHHHHHHHHHhhc
Q 003231 676 ------------DLDEAIIRRFERRIMV-GLPSAENREMILKTLLAKE 710 (837)
Q Consensus 676 ------------~Ld~aL~rRF~~~I~~-~~P~~eer~~IL~~~l~~~ 710 (837)
.|++.+++|||.++.+ +.|+.+.-..|..+++..+
T Consensus 439 ryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 439 RYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred cCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 4688999999877654 6788777777777776655
No 300
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=8.9e-05 Score=81.24 Aligned_cols=157 Identities=11% Similarity=0.015 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEeccccccc
Q 003231 532 EIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA-------------SFINVSMSTITSK 598 (837)
Q Consensus 532 ~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~-------------~~i~v~~s~l~s~ 598 (837)
.+++.++..+... +-.+.+||+|+.|.||+.+|+.+++.+-+ .++.++.. +.
T Consensus 3 ~~~~~l~~~i~~~------------~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~ 67 (299)
T PRK07132 3 NWIKFLDNSATQN------------KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK 67 (299)
T ss_pred hHHHHHHHHHHhC------------CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC
Confidence 4566666666431 35567899999999999999999998722 12223210 01
Q ss_pred cccccHHHHHHHHHHHHh-----cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC
Q 003231 599 WFGEDEKNVRALFTLAAK-----VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR 673 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~-----~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~ 673 (837)
. -.-..++.+.+.... ....|++||++|.+.. ...+.|+..++. ++..+++|.+|+.
T Consensus 68 ~--i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~------------~a~NaLLK~LEE----Pp~~t~~il~~~~ 129 (299)
T PRK07132 68 D--LSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSN------------SLLNALLKTIEE----PPKDTYFLLTTKN 129 (299)
T ss_pred c--CCHHHHHHHHHHhccCCcccCCceEEEEecccccCH------------HHHHHHHHHhhC----CCCCeEEEEEeCC
Confidence 0 112334555544422 2457999999998732 334566666654 3455677777778
Q ss_pred CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCC
Q 003231 674 PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEG 726 (837)
Q Consensus 674 ~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G 726 (837)
+..+-+.+++|+ ..+.|..|+.++....+... +.++.....+|..+.|
T Consensus 130 ~~kll~TI~SRc-~~~~f~~l~~~~l~~~l~~~----~~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 130 INKVLPTIVSRC-QVFNVKEPDQQKILAKLLSK----NKEKEYNWFYAYIFSN 177 (299)
T ss_pred hHhChHHHHhCe-EEEECCCCCHHHHHHHHHHc----CCChhHHHHHHHHcCC
Confidence 889999999999 78899999988877666542 3444444445555554
No 301
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.08 E-value=2e-05 Score=81.99 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=48.8
Q ss_pred CcEEEEEccchhHhhhc-HHHHHHHHHHHHhccCCE-EEEecccc--------------cCCCCCCchhHHHHccCCcee
Q 003231 267 SSVILYLRDVDKLLFQS-QRFYNLLDKLLKKLSGSV-LVLGSRML--------------EPEDDCRDVDERLTILFPYNL 330 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~-~~~~~~lk~~l~~l~g~v-~iiGs~~~--------------~~~~~~~~~d~al~rrF~~~I 330 (837)
..-||||||||. |..+ +++ |-+.++. |.| ++||..+. ..+.+...++..|..||....
T Consensus 101 ~~~ILFIDEIHR-lnk~~qe~---LlpamEd--~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~ 174 (233)
T PF05496_consen 101 EGDILFIDEIHR-LNKAQQEI---LLPAMED--GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVL 174 (233)
T ss_dssp TT-EEEECTCCC---HHHHHH---HHHHHHC--SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEE
T ss_pred CCcEEEEechhh-ccHHHHHH---HHHHhcc--CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceec
Confidence 456999999999 5544 343 5567775 777 46676432 345567788999999999777
Q ss_pred eeCCCChHHHHHHHHH
Q 003231 331 EVKLPEDETHLVNWKA 346 (837)
Q Consensus 331 eI~~P~~e~rl~Ilk~ 346 (837)
....=+.++-.+|.+.
T Consensus 175 ~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 175 RLEFYSEEELAKIVKR 190 (233)
T ss_dssp E----THHHHHHHHHH
T ss_pred chhcCCHHHHHHHHHH
Confidence 7888888888888874
No 302
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.08 E-value=4.2e-05 Score=88.45 Aligned_cols=202 Identities=18% Similarity=0.204 Sum_probs=119.1
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-c---ccccccccc
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVS-M---STITSKWFG 601 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~-~---s~l~s~~~G 601 (837)
.|.|++.+|.-|.-.+......... .+-.++..-+|+++|.||+||+-+.++++..+...++.-- . +.|....+-
T Consensus 346 sIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvk 424 (764)
T KOG0480|consen 346 SIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVK 424 (764)
T ss_pred cccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEe
Confidence 4999999999988777664433332 3333455567999999999999999999987754443211 1 111111110
Q ss_pred ccHHHHHHHHHHHH---hcCCeEEEecccccccCCCCCcchHHH-HHHHHHHHHHhh-ccccccCCceEEEEEecCCCC-
Q 003231 602 EDEKNVRALFTLAA---KVSPTIIFVDEVDSMLGQRTRVGEHEA-MRKIKNEFMTHW-DGLLTRNGERILVLAATNRPF- 675 (837)
Q Consensus 602 ~~e~~l~~lf~~A~---~~~psVLfIDEID~L~~~r~~~~~~~~-~~~i~~~Ll~~l-d~~~~~~~~~vlVIaTTN~~~- 675 (837)
..+.. ...-+|- -...+|-.|||+|+|--+ ++-+ +..+-++-+..- -|+...-+.|.-|||++|+..
T Consensus 425 D~esg--df~iEAGALmLADnGICCIDEFDKMd~~-----dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~G 497 (764)
T KOG0480|consen 425 DEESG--DFTIEAGALMLADNGICCIDEFDKMDVK-----DQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGG 497 (764)
T ss_pred cCCCC--ceeeecCcEEEccCceEEechhcccChH-----hHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCC
Confidence 00000 0000010 113479999999998421 1111 111111111111 122223345678899998842
Q ss_pred ------------CCcHHHHHHHHHhh-hcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 676 ------------DLDEAIIRRFERRI-MVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 676 ------------~Ld~aL~rRF~~~I-~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
.+++++++|||..+ .++.|++..-..|-++++..+.. ++. ......|+..+++..+..|.
T Consensus 498 hYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~-----~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 498 HYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA-----TERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred ccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc-----ccccccccHHHHHHHHHHHH
Confidence 57899999998665 56889999888999888877643 221 11114688888887777664
No 303
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.07 E-value=3.1e-05 Score=82.05 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=52.7
Q ss_pred EEEEEccchhHhhhcH----HHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHHHH
Q 003231 269 VILYLRDVDKLLFQSQ----RFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETHLV 342 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~~----~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~rl~ 342 (837)
-+|+|||||. +.+.. .+++++....++ |+..+|++++ ..........++|..||. ..++|++|+++++++
T Consensus 99 dlliiDdi~~-~~~~~~~~~~lf~l~n~~~e~--g~~~li~ts~-~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 99 SLVCIDNIEC-IAGDELWEMAIFDLYNRILES--GRTRLLITGD-RPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred CEEEEeChhh-hcCCHHHHHHHHHHHHHHHHc--CCCeEEEeCC-CChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 4789999998 54432 367777777774 7655555433 222223346799999993 399999999999999
Q ss_pred HHHH
Q 003231 343 NWKA 346 (837)
Q Consensus 343 Ilk~ 346 (837)
+++.
T Consensus 175 ~l~~ 178 (235)
T PRK08084 175 ALQL 178 (235)
T ss_pred HHHH
Confidence 9986
No 304
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.07 E-value=0.00013 Score=86.20 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=66.4
Q ss_pred cCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhH
Q 003231 298 SGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDD 377 (837)
Q Consensus 298 ~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~d 377 (837)
+-.+++|||||.+ +.+++++|.+|+. .|.+++++.++...|++..+.+.. ..-..+.+. -
T Consensus 231 ~~d~rlI~ATt~~----p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~----i~is~~al~-----------~ 290 (531)
T TIGR02902 231 PADFRLIGATTRN----PEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIG----INLEKHALE-----------L 290 (531)
T ss_pred ccceEEEEEecCC----cccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcC----CCcCHHHHH-----------H
Confidence 3457888886654 5578999999996 899999999999999998654321 111111111 1
Q ss_pred HhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 378 LGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 378 L~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
|..-+. ...++..+++.|..++...+ +..|+.+|++..+.
T Consensus 291 I~~y~~-----n~Rel~nll~~Aa~~A~~~~--------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 291 IVKYAS-----NGREAVNIVQLAAGIALGEG--------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHhhh-----hHHHHHHHHHHHHHHHhhCC--------CcEEcHHHHHHHhC
Confidence 111111 34677788888877665432 34599999999987
No 305
>PF05729 NACHT: NACHT domain
Probab=98.03 E-value=4.1e-05 Score=75.15 Aligned_cols=140 Identities=16% Similarity=0.270 Sum_probs=74.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEecccccccc------------ccccHHHHHH-HHHHHHhcC
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAG--------AS-FINVSMSTITSKW------------FGEDEKNVRA-LFTLAAKVS 618 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg--------~~-~i~v~~s~l~s~~------------~G~~e~~l~~-lf~~A~~~~ 618 (837)
-++|+|+||+|||++++.++..+. .. ++.+.+.+..... .......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998771 12 2334443332210 0111111111 112233455
Q ss_pred CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHH--HhhhcCCCCH
Q 003231 619 PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFE--RRIMVGLPSA 696 (837)
Q Consensus 619 psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~--~~I~~~~P~~ 696 (837)
..+|+||.+|.+...... .........+..+ +... ...+ +.++.|++. ..... +.+++. ..+.++..+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l---~~~~-~~~~--~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQL---LPQA-LPPG--VKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHH---hhhc-cCCC--CeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 678999999998653211 0111112222222 2221 1122 344444432 22222 444443 3478888899
Q ss_pred HHHHHHHHHHHhh
Q 003231 697 ENREMILKTLLAK 709 (837)
Q Consensus 697 eer~~IL~~~l~~ 709 (837)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988764
No 306
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.97 E-value=5.9e-05 Score=85.06 Aligned_cols=205 Identities=22% Similarity=0.234 Sum_probs=115.4
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHH
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKN 606 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~ 606 (837)
|.|++++|+.|.-++.....+.- -.+-.++..-+|+|.|.||+.|+-|.+.+.+-.....+..... +.-+|-+...
T Consensus 344 IyGheDVKKaLLLlLVGgvd~~~-~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAAV 419 (721)
T KOG0482|consen 344 IYGHEDVKKALLLLLVGGVDKSP-GDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAAV 419 (721)
T ss_pred hccchHHHHHHHHHhhCCCCCCC-CCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchhh
Confidence 99999999999877765332211 0111223455799999999999999999988764333321110 0112222111
Q ss_pred HHHHHHH-------H-HhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHH--HhhccccccCCceEEEEEecCCCC-
Q 003231 607 VRALFTL-------A-AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM--THWDGLLTRNGERILVLAATNRPF- 675 (837)
Q Consensus 607 l~~lf~~-------A-~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll--~~ld~~~~~~~~~vlVIaTTN~~~- 675 (837)
++.-... | --...+|-.|||+|++.... ..+.-.++.+-. ..--|+...-+.+..|+|++|+.+
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D-----RtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayG 494 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD-----RTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYG 494 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh-----hHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCcccc
Confidence 1110000 0 00124788999999995421 112222222211 112245555567889999998742
Q ss_pred ------------CCcHHHHHHHHHhhhc-CCCCHHHHHHHHHHHHhhcC--------CChhhHHH------HHHHcCCCC
Q 003231 676 ------------DLDEAIIRRFERRIMV-GLPSAENREMILKTLLAKEK--------VEDLDFKE------LAAMTEGYS 728 (837)
Q Consensus 676 ------------~Ld~aL~rRF~~~I~~-~~P~~eer~~IL~~~l~~~~--------~~d~dl~~------LA~~t~G~s 728 (837)
.|+.++++|||..+.+ +.|+.+.-..+.+++.--+. +..++.+. +|+...-+.
T Consensus 495 RYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~v 574 (721)
T KOG0482|consen 495 RYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVV 574 (721)
T ss_pred ccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCC
Confidence 5789999999876644 77888777777766543221 12233322 344444466
Q ss_pred HHHHHHHHHHHH
Q 003231 729 GSDLKNLCVTAA 740 (837)
Q Consensus 729 g~DL~~L~~~Aa 740 (837)
+.+|...+..|-
T Consensus 575 p~~l~dyi~~AY 586 (721)
T KOG0482|consen 575 PEALADYITGAY 586 (721)
T ss_pred CHHHHHHHHHHH
Confidence 666666665443
No 307
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=9.7e-05 Score=85.43 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=54.2
Q ss_pred CcEEEEEccchhHhhhc---HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHHH
Q 003231 267 SSVILYLRDVDKLLFQS---QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETHL 341 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~---~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~rl 341 (837)
++-+|+|||++.+.... .++++.+..+.++ |..+|++++ .. ......+++.|..||. ..++|.+|+.+.|.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd-~~-p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSD-RE-PQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECC-CC-HHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 57799999999854322 3588888877775 666666652 11 0112235667777784 47789999999999
Q ss_pred HHHHHHH
Q 003231 342 VNWKAKL 348 (837)
Q Consensus 342 ~Ilk~~l 348 (837)
.|++...
T Consensus 270 ~IL~~~~ 276 (440)
T PRK14088 270 KIARKML 276 (440)
T ss_pred HHHHHHH
Confidence 9999743
No 308
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.94 E-value=0.00067 Score=77.16 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhh-c-HHHHHHHHHHHHhccC-CEEEEecccccCCCCCCchhHHHHccC-C
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQ-S-QRFYNLLDKLLKKLSG-SVLVLGSRMLEPEDDCRDVDERLTILF-P 327 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~-~-~~~~~~lk~~l~~l~g-~v~iiGs~~~~~~~~~~~~d~al~rrF-~ 327 (837)
+++.+.+.+.+ ...++||+|||+|.+... . ..+++++. .+..+.+ +|.+||...-... ....++.+..+| +
T Consensus 125 ~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~~-~~~~~~~~~v~vI~i~~~~~~--~~~l~~~~~s~~~~ 199 (394)
T PRK00411 125 LFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLLR-AHEEYPGARIGVIGISSDLTF--LYILDPRVKSVFRP 199 (394)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHHH-hhhccCCCeEEEEEEECCcch--hhhcCHHHHhcCCc
Confidence 45555555543 346899999999997622 2 33555543 3444444 5555554221111 112566666555 5
Q ss_pred ceeeeCCCChHHHHHHHHHHH
Q 003231 328 YNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 328 ~~IeI~~P~~e~rl~Ilk~~l 348 (837)
..|.+++++.++...||+..+
T Consensus 200 ~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHH
Confidence 679999999999999999765
No 309
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00013 Score=85.45 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=58.3
Q ss_pred EEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHH
Q 003231 269 VILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
-|++|||+|.+ . ....+.|.+.|+..+..+++|.+| ++...+.+.|..|.. .+++..++.++...+++..+
T Consensus 130 KVvIIDEa~~L-s--~~a~naLLk~LEepp~~~vfI~aT-----te~~kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 130 KIFIIDEVHML-S--KGAFNALLKTLEEPPPHIIFIFAT-----TEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred EEEEEEChhhc-C--HHHHHHHHHHHhhcCCCEEEEEEe-----CChHHhhHHHHhcce-EEEccCCCHHHHHHHHHHHH
Confidence 48999999984 2 355666777888888888877764 344568899999996 99999999999999999876
Q ss_pred HH
Q 003231 349 EE 350 (837)
Q Consensus 349 ~~ 350 (837)
.+
T Consensus 201 ~~ 202 (507)
T PRK06645 201 KQ 202 (507)
T ss_pred HH
Confidence 53
No 310
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.94 E-value=4.1e-05 Score=74.68 Aligned_cols=71 Identities=25% Similarity=0.431 Sum_probs=47.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----------------------ccc--cHHHHHHHHHHH
Q 003231 562 ILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW----------------------FGE--DEKNVRALFTLA 614 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~----------------------~G~--~e~~l~~lf~~A 614 (837)
++|+||||+|||+++..++..+ +.+++.+++....... ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 5677777665432210 000 111112234455
Q ss_pred HhcCCeEEEecccccccC
Q 003231 615 AKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 615 ~~~~psVLfIDEID~L~~ 632 (837)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 666789999999998864
No 311
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.92 E-value=1.5e-06 Score=96.76 Aligned_cols=163 Identities=28% Similarity=0.364 Sum_probs=83.8
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-----cc-----
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMST-----IT----- 596 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~-----l~----- 596 (837)
|.|++.+|..|.-.+..+..... -.+...+..-++||.|.||+|||.|.+.+++.....+ ++++.. +.
T Consensus 26 i~g~~~iK~aill~L~~~~~~~~-~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 26 IYGHEDIKKAILLQLFGGVEKND-PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTT-HHHHHHHCCCCTT--SCCC-CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECC
T ss_pred CcCcHHHHHHHHHHHHhcccccc-ccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceecc
Confidence 89999888876433322211110 0011124456899999999999999998876553333 333221 11
Q ss_pred ----cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc---------ccCCc
Q 003231 597 ----SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL---------TRNGE 663 (837)
Q Consensus 597 ----s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~---------~~~~~ 663 (837)
+.|.-+.. .+-.| ..+|++|||+|++-. .....+...|+... ..-+.
T Consensus 104 d~~~~~~~leaG-----alvla---d~GiccIDe~dk~~~------------~~~~~l~eaMEqq~isi~kagi~~~l~a 163 (331)
T PF00493_consen 104 DPVTGEWVLEAG-----ALVLA---DGGICCIDEFDKMKE------------DDRDALHEAMEQQTISIAKAGIVTTLNA 163 (331)
T ss_dssp CGGTSSECEEE------HHHHC---TTSEEEECTTTT--C------------HHHHHHHHHHHCSCEEECTSSSEEEEE-
T ss_pred ccccceeEEeCC-----chhcc---cCceeeecccccccc------------hHHHHHHHHHHcCeeccchhhhcccccc
Confidence 11111111 12222 348999999999843 12334444444322 11234
Q ss_pred eEEEEEecCCCC-------------CCcHHHHHHHHHhhh-cCCCCHHHHHHHHHHHHhhcC
Q 003231 664 RILVLAATNRPF-------------DLDEAIIRRFERRIM-VGLPSAENREMILKTLLAKEK 711 (837)
Q Consensus 664 ~vlVIaTTN~~~-------------~Ld~aL~rRF~~~I~-~~~P~~eer~~IL~~~l~~~~ 711 (837)
+.-|+|++|+.. .+++.+++|||.++. .+.|+.+.-..|.++++..+.
T Consensus 164 r~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~ 225 (331)
T PF00493_consen 164 RCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHR 225 (331)
T ss_dssp --EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred hhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccc
Confidence 678999999854 467899999998765 477887777788887776653
No 312
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.91 E-value=0.00011 Score=89.54 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=57.8
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
...||||||||.+-...++ .|-+.+++ |.+++||+||-. ..+.++++|..|.. .|.+++++.++...+|+.
T Consensus 109 ~~~IL~IDEIh~Ln~~qQd---aLL~~lE~--g~IiLI~aTTen---p~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQD---ALLPWVEN--GTITLIGATTEN---PYFEVNKALVSRSR-LFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred CceEEEEeChhhCCHHHHH---HHHHHhcC--ceEEEEEecCCC---hHhhhhhHhhcccc-ceecCCCCHHHHHHHHHH
Confidence 4679999999995332232 34456665 889999997653 34578899998875 899999999999999998
Q ss_pred HHHH
Q 003231 347 KLEE 350 (837)
Q Consensus 347 ~l~~ 350 (837)
.+.+
T Consensus 180 ~l~~ 183 (725)
T PRK13341 180 ALQD 183 (725)
T ss_pred HHHH
Confidence 7764
No 313
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.91 E-value=0.00015 Score=76.32 Aligned_cols=160 Identities=21% Similarity=0.280 Sum_probs=112.3
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCC---eEEEeecc
Q 003231 67 KTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFES---KLLLLDVN 143 (837)
Q Consensus 67 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a---~ll~ld~~ 143 (837)
.|.+++.-+| |..|..|+.-...+++- + ...-+||+|+.++++.+|+|||.++|.. +|+-|+-.
T Consensus 23 ~~~l~~L~Gi--e~Qk~~l~~Nt~~Fl~G---------~--pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 23 PIRLDDLIGI--ERQKEALIENTEQFLQG---------L--PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCHHHhcCH--HHHHHHHHHHHHHHHcC---------C--CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 4678999999 99999999887766654 2 3567999999999999999999997754 44444443
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
++.
T Consensus 90 ~L~----------------------------------------------------------------------------- 92 (249)
T PF05673_consen 90 DLG----------------------------------------------------------------------------- 92 (249)
T ss_pred Hhc-----------------------------------------------------------------------------
Confidence 332
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHHHHHHHHHHHH----hccC
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQRFYNLLDKLLK----KLSG 299 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~----~l~g 299 (837)
-+..|+.++.. .....|||+||.. |......|..||..|+ ..+.
T Consensus 93 ----------------------------~l~~l~~~l~~--~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~P~ 140 (249)
T PF05673_consen 93 ----------------------------DLPELLDLLRD--RPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEARPD 140 (249)
T ss_pred ----------------------------cHHHHHHHHhc--CCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccCCC
Confidence 12224444442 3478999999964 7777778888888886 3344
Q ss_pred CEEEEeccc--------c-c-------CCCCCCchhHHH--HccCCceeeeCCCChHHHHHHHHHHH
Q 003231 300 SVLVLGSRM--------L-E-------PEDDCRDVDERL--TILFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 300 ~v~iiGs~~--------~-~-------~~~~~~~~d~al--~rrF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
||++..... + | +-+..+.+++.| +-||...|.+.+|+.++=++|.+.++
T Consensus 141 NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 141 NVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYA 207 (249)
T ss_pred cEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHH
Confidence 777664311 0 1 111223345554 47999999999999999999999754
No 314
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.90 E-value=0.00022 Score=88.85 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=91.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------ccccccccHHH---HHHHHHHHHhcCCeEEEecccccc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI------TSKWFGEDEKN---VRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l------~s~~~G~~e~~---l~~lf~~A~~~~psVLfIDEID~L 630 (837)
-.+||.||+-+|||++...+|++.|..|++++-.+- .+.|+....+. -..++-.|.+.. --|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 359999999999999999999999999999987543 33333222111 122333444433 57889999854
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhcccc----------ccCCceEEEEEecCCCC------CCcHHHHHHHHHhhhcCCC
Q 003231 631 LGQRTRVGEHEAMRKIKNEFMTHWDGLL----------TRNGERILVLAATNRPF------DLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 631 ~~~r~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~~vlVIaTTN~~~------~Ld~aL~rRF~~~I~~~~P 694 (837)
.. .++..|-.++|+-+ ..+...++++||-|+|- .|..|+++|| ..++|..-
T Consensus 968 pT------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddi 1034 (4600)
T COG5271 968 PT------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDI 1034 (4600)
T ss_pred cH------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccC
Confidence 21 33333333333321 12345688899999873 5788999999 88899888
Q ss_pred CHHHHHHHHHHHH
Q 003231 695 SAENREMILKTLL 707 (837)
Q Consensus 695 ~~eer~~IL~~~l 707 (837)
..++...||+..+
T Consensus 1035 pedEle~ILh~rc 1047 (4600)
T COG5271 1035 PEDELEEILHGRC 1047 (4600)
T ss_pred cHHHHHHHHhccC
Confidence 8899999987654
No 315
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00012 Score=77.95 Aligned_cols=121 Identities=8% Similarity=0.057 Sum_probs=78.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE--------------EEEecccccccc-c--cccHHHHHHHHHHHHh---
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASF--------------INVSMSTITSKW-F--GEDEKNVRALFTLAAK--- 616 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~--------------i~v~~s~l~s~~-~--G~~e~~l~~lf~~A~~--- 616 (837)
.+++.+||+||+|+||..+|.++|+.+-+.- ..-+-+++.--+ . .-....++.+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4678899999999999999999998873210 000011111000 0 0122334444443321
Q ss_pred --cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCC
Q 003231 617 --VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 617 --~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P 694 (837)
....|++|+++|+|.. ...|.|+..++. ++.++++|.+|+.++.+.|.+++|+ ..+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~~------------~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK------------QSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhCH------------HHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 2357999999999842 345667666654 5567899999999999999999998 55666655
No 316
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.89 E-value=0.00043 Score=85.27 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=54.0
Q ss_pred CcEEEEEccchhHhhh-cHHHHHHHHHHHHhc---------------cCCEEEEecccccCCCCCCchhHHHHccCCcee
Q 003231 267 SSVILYLRDVDKLLFQ-SQRFYNLLDKLLKKL---------------SGSVLVLGSRMLEPEDDCRDVDERLTILFPYNL 330 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~-~~~~~~~lk~~l~~l---------------~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~I 330 (837)
.| ||||||||++-.. ..+..+.|-..|+.- -++|++|++ + | ...++++|..||. .|
T Consensus 417 ~~-villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T-a----N-~~~i~~aLl~R~~-ii 488 (784)
T PRK10787 417 NP-LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT-S----N-SMNIPAPLLDRME-VI 488 (784)
T ss_pred CC-EEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEc-C----C-CCCCCHHHhccee-ee
Confidence 56 5789999995422 122344555555420 157887873 2 2 3469999999997 89
Q ss_pred eeCCCChHHHHHHHHHHHH
Q 003231 331 EVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 331 eI~~P~~e~rl~Ilk~~l~ 349 (837)
++..+++++-++|.+.+|.
T Consensus 489 ~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 489 RLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ecCCCCHHHHHHHHHHhhh
Confidence 9999999999999999885
No 317
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00018 Score=83.03 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=57.2
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|.+ +.++.|.|-+.|+.-++.+++|.+| ++...+...|..|.+ ++.+..++.++-...++.
T Consensus 121 ~~KV~IIDEah~L---s~~A~NALLKtLEEPp~~viFILaT-----te~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~ 191 (484)
T PRK14956 121 KYKVYIIDEVHML---TDQSFNALLKTLEEPPAHIVFILAT-----TEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSEK 191 (484)
T ss_pred CCEEEEEechhhc---CHHHHHHHHHHhhcCCCceEEEeec-----CChhhccHHHHhhhh-eeeecCCCHHHHHHHHHH
Confidence 4579999999994 3456677777888888999998874 446778999999996 999999998876666665
Q ss_pred H
Q 003231 347 K 347 (837)
Q Consensus 347 ~ 347 (837)
.
T Consensus 192 i 192 (484)
T PRK14956 192 L 192 (484)
T ss_pred H
Confidence 3
No 318
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.89 E-value=0.00037 Score=77.24 Aligned_cols=72 Identities=10% Similarity=0.078 Sum_probs=49.5
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
+-+|+|||+|. +. .+..+.|...++..+....+|-+++ +...+.+.|..|+. .+++.+|+.++...+++..
T Consensus 126 ~~vlilDe~~~-l~--~~~~~~L~~~le~~~~~~~~Il~~~-----~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~ 196 (337)
T PRK12402 126 YKTILLDNAEA-LR--EDAQQALRRIMEQYSRTCRFIIATR-----QPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESI 196 (337)
T ss_pred CcEEEEeCccc-CC--HHHHHHHHHHHHhccCCCeEEEEeC-----ChhhCchhhcCCce-EEEecCCCHHHHHHHHHHH
Confidence 35999999998 43 2344556677776665544443322 23456678888885 8999999999998888875
Q ss_pred H
Q 003231 348 L 348 (837)
Q Consensus 348 l 348 (837)
+
T Consensus 197 ~ 197 (337)
T PRK12402 197 A 197 (337)
T ss_pred H
Confidence 4
No 319
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.88 E-value=0.00015 Score=76.20 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=50.9
Q ss_pred cEEEEEccchhHhhhc----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc--eeeeCCCChHHHH
Q 003231 268 SVILYLRDVDKLLFQS----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY--NLEVKLPEDETHL 341 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~--~IeI~~P~~e~rl 341 (837)
.=+|+|||+|. +.+. ..+++++....++ |.-+|+.|...- ..-..+++.|..||.+ .++|.+|+++.|.
T Consensus 98 ~DlL~iDDi~~-l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P--~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 98 ADLLIIDDIQF-LAGKQRTQEELFHLFNRLIES--GKQLILTSDRPP--SELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp SSEEEEETGGG-GTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-T--TTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred CCEEEEecchh-hcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCC--ccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 46889999999 5554 2488888888886 666666552221 1123467889888877 8999999999999
Q ss_pred HHHHHHH
Q 003231 342 VNWKAKL 348 (837)
Q Consensus 342 ~Ilk~~l 348 (837)
+|++...
T Consensus 173 ~il~~~a 179 (219)
T PF00308_consen 173 RILQKKA 179 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999743
No 320
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=7.6e-05 Score=86.29 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=57.1
Q ss_pred CcEEEEEccchhHhhhc----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHH
Q 003231 267 SSVILYLRDVDKLLFQS----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETH 340 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~r 340 (837)
++-+|+|||++. +.+. .++++.|..+.+. |..+|++++... .....++++|..||. ..++|.+|+.++|
T Consensus 202 ~~dvLiIDDiq~-l~~k~~~qeelf~l~N~l~~~--~k~IIlts~~~p--~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 202 NVDALFIEDIEV-FSGKGATQEEFFHTFNSLHTE--GKLIVISSTCAP--QDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred cCCEEEEcchhh-hcCChhhHHHHHHHHHHHHHC--CCcEEEecCCCH--HHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 456899999998 5442 3578888777764 677777663221 112357899999996 6899999999999
Q ss_pred HHHHHHHHH
Q 003231 341 LVNWKAKLE 349 (837)
Q Consensus 341 l~Ilk~~l~ 349 (837)
..||+....
T Consensus 277 ~~iL~~k~~ 285 (445)
T PRK12422 277 RSFLERKAE 285 (445)
T ss_pred HHHHHHHHH
Confidence 999997543
No 321
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00017 Score=85.63 Aligned_cols=119 Identities=14% Similarity=0.092 Sum_probs=75.9
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|. |. ....+.|.+.|+..++.+.+|.++ ++...+...+..|.. +|++.+++.++-.+.++.
T Consensus 118 k~KV~IIDEVh~-LS--~~A~NALLKtLEEPP~~v~FILaT-----td~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~ 188 (702)
T PRK14960 118 RFKVYLIDEVHM-LS--THSFNALLKTLEEPPEHVKFLFAT-----TDPQKLPITVISRCL-QFTLRPLAVDEITKHLGA 188 (702)
T ss_pred CcEEEEEechHh-cC--HHHHHHHHHHHhcCCCCcEEEEEE-----CChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHH
Confidence 346999999998 43 246677888899888888887764 334556778889996 999999999998888887
Q ss_pred HHHHHHHHhhcccchhHHHH-HhhcCC---CChhHHhh-cccCCCCCChhhHHHHHH
Q 003231 347 KLEEDMKVLQFQDNKNHIAE-VLAAND---LECDDLGS-ICQADTMVLSNYIEEIVV 398 (837)
Q Consensus 347 ~l~~d~~~~~~~~n~~~i~~-vl~~~~---~~~~dL~~-~~~~d~~l~~~~Ie~iv~ 398 (837)
.+.+.. +....+.+.. +..++| .....|.. +...+..++.+.|..++.
T Consensus 189 Il~kEg----I~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG 241 (702)
T PRK14960 189 ILEKEQ----IAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhc
Confidence 665432 2233333332 223333 11111111 222344567777777654
No 322
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00021 Score=84.59 Aligned_cols=77 Identities=23% Similarity=0.338 Sum_probs=54.2
Q ss_pred CcEEEEEccchhHhhhc----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc--eeeeCCCChHHH
Q 003231 267 SSVILYLRDVDKLLFQS----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY--NLEVKLPEDETH 340 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~--~IeI~~P~~e~r 340 (837)
++=+|+||||+.+ .+. .+++++|..+.++ |.-+||.|+.. -.....++++|..||.+ .++|.+|++|.|
T Consensus 377 ~~DLLlIDDIq~l-~gke~tqeeLF~l~N~l~e~--gk~IIITSd~~--P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 377 EMDILLVDDIQFL-EDKESTQEEFFHTFNTLHNA--NKQIVLSSDRP--PKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred cCCEEEEehhccc-cCCHHHHHHHHHHHHHHHhc--CCCEEEecCCC--hHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 3568999999984 342 3588999888875 44444433111 11223578899999955 559999999999
Q ss_pred HHHHHHHH
Q 003231 341 LVNWKAKL 348 (837)
Q Consensus 341 l~Ilk~~l 348 (837)
..||+.+.
T Consensus 452 ~aIL~kka 459 (617)
T PRK14086 452 IAILRKKA 459 (617)
T ss_pred HHHHHHHH
Confidence 99999754
No 323
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.87 E-value=6.9e-05 Score=81.25 Aligned_cols=161 Identities=23% Similarity=0.356 Sum_probs=100.4
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEecccc--c-----
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN---EAGASFINVSMSTI--T----- 596 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~---elg~~~i~v~~s~l--~----- 596 (837)
+.|..+..+.+.+++....-. ....++++.||.|+|||++....-. +.|-+|+.+..... .
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 788888888888887663322 3467899999999999998765533 55666665543221 1
Q ss_pred --------------cccccccHHHHHHHHHHHHhc----CCeEEE-ecccccccCCCCCcchHHHHHHHHHHHHHhhccc
Q 003231 597 --------------SKWFGEDEKNVRALFTLAAKV----SPTIIF-VDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL 657 (837)
Q Consensus 597 --------------s~~~G~~e~~l~~lf~~A~~~----~psVLf-IDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~ 657 (837)
.+.+|.....+..++...... ...||| +||||.+++.. .+.++..+-+.
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfDi 164 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHHH
Confidence 112344444444444433321 122555 58999887632 23344444444
Q ss_pred cccCCceEEEEEecCCCCC---CcHHHHHHHHHh-hhc-CCCCHHHHHHHHHHHHh
Q 003231 658 LTRNGERILVLAATNRPFD---LDEAIIRRFERR-IMV-GLPSAENREMILKTLLA 708 (837)
Q Consensus 658 ~~~~~~~vlVIaTTN~~~~---Ld~aL~rRF~~~-I~~-~~P~~eer~~IL~~~l~ 708 (837)
......+++||+.|.+.+. |...+.+||..+ |++ +.....+-..+++..+.
T Consensus 165 sqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 165 SQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 4434456899988877654 446778899766 444 44568888899888873
No 324
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.86 E-value=5.5e-05 Score=85.05 Aligned_cols=103 Identities=19% Similarity=0.370 Sum_probs=58.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccccccccc------cHHHHHHHHHHHHhcCCeEEEecccc
Q 003231 556 LKPCRGILLFGPPGTGKTMLAKAIANEAGA-SFINVSMSTITSKWFGE------DEKNVRALFTLAAKVSPTIIFVDEVD 628 (837)
Q Consensus 556 ~~p~~~iLL~GPpGtGKT~LAralA~elg~-~~i~v~~s~l~s~~~G~------~e~~l~~lf~~A~~~~psVLfIDEID 628 (837)
..+++|++||||+|+|||+|+-.+...+.. .-.++....++...... ...-+..+.....+ ...||++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 357899999999999999999999888754 22233333332211000 11112222222222 23599999997
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC
Q 003231 629 SMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP 674 (837)
Q Consensus 629 ~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~ 674 (837)
-- ..+.--.+.+++..+.. .++++|+|+|++
T Consensus 138 V~-----DiaDAmil~rLf~~l~~----------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----DIADAMILKRLFEALFK----------RGVVLVATSNRP 168 (362)
T ss_pred cc-----chhHHHHHHHHHHHHHH----------CCCEEEecCCCC
Confidence 42 11222233344444321 348999999984
No 325
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00023 Score=80.38 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=55.0
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
.-|++|||+|.+ . ....+.|-+.++..++.+.+|.++ ++...+.+.|..|+. .+++.+|+.++...+++..
T Consensus 120 ~kviIIDEa~~l-~--~~a~naLLk~lEe~~~~~~fIl~t-----~~~~~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~ 190 (363)
T PRK14961 120 FKVYLIDEVHML-S--RHSFNALLKTLEEPPQHIKFILAT-----TDVEKIPKTILSRCL-QFKLKIISEEKIFNFLKYI 190 (363)
T ss_pred ceEEEEEChhhc-C--HHHHHHHHHHHhcCCCCeEEEEEc-----CChHhhhHHHHhhce-EEeCCCCCHHHHHHHHHHH
Confidence 459999999994 2 334555667788878888777653 334568889998995 9999999999999888875
Q ss_pred H
Q 003231 348 L 348 (837)
Q Consensus 348 l 348 (837)
+
T Consensus 191 ~ 191 (363)
T PRK14961 191 L 191 (363)
T ss_pred H
Confidence 4
No 326
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.85 E-value=0.00028 Score=73.74 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=46.7
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhC---CeEEEeecc
Q 003231 67 KTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFE---SKLLLLDVN 143 (837)
Q Consensus 67 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~---a~ll~ld~~ 143 (837)
.-|||+|=+--++++...|...+. ...++-|||+||++.+++.||+++|++.. .+++.+|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA---------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh---------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 467888853345667777666542 13467899999999999999999999874 566666665
Q ss_pred cc
Q 003231 144 DF 145 (837)
Q Consensus 144 ~~ 145 (837)
.+
T Consensus 76 ~~ 77 (226)
T TIGR03420 76 EL 77 (226)
T ss_pred HH
Confidence 55
No 327
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.8e-05 Score=90.91 Aligned_cols=162 Identities=23% Similarity=0.378 Sum_probs=110.3
Q ss_pred ccccccc-hHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 524 FADIGAL-NEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 524 fddIiG~-d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
++-++|. ++-.+.+.+.+.. +..++-+|.|.||+|||.++.-+|+.. +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 4556675 5544454444433 223678999999999999999999876 345677777
Q ss_pred ccccc--ccccccHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEE
Q 003231 593 STITS--KWFGEDEKNVRALFTLAAK-VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669 (837)
Q Consensus 593 s~l~s--~~~G~~e~~l~~lf~~A~~-~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIa 669 (837)
..+.. ++.|+.+..++.+...+.. ....||||||++.+.+...+.+ .....+.|-..+. .+ .+.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~----~~d~~nlLkp~L~-----rg-~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG----AIDAANLLKPLLA-----RG-GLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch----HHHHHHhhHHHHh-----cC-CeEEEe
Confidence 65543 4678889999999998884 3567889999999987655422 2222232222211 12 277787
Q ss_pred ecCCC-----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh
Q 003231 670 ATNRP-----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK 709 (837)
Q Consensus 670 TTN~~-----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~ 709 (837)
||..- ..-+|++-+|| ..+.++.|+.+....||+..-..
T Consensus 322 atT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhhhhhhhhhh
Confidence 66531 24589999999 56788999988888888776555
No 328
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.82 E-value=4.7e-05 Score=70.60 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=36.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSML 631 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~ 631 (837)
|.|+||||+|||++|+.||+.+.-.+-.-....+... .. -.+.+ .-+..+ .++++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~---~~---~~~~w-~gY~~q-~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTR---NP---GDKFW-DGYQGQ-PVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeC---CC---ccchh-hccCCC-cEEEEeecCccc
Confidence 5799999999999999999888533311111111100 00 01122 223333 689999998654
No 329
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00023 Score=80.96 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=52.2
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCE-EEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSV-LVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v-~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
.-|+||||+|.+ +..+.|.|-+.|+.-+.++ .|+++ ++...+.+.|.+|.+ .|.+++|+.++..+.|.
T Consensus 118 ~kViiIDead~m---~~~aanaLLk~LEep~~~~~fIL~a------~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 118 WRIVVIEDADRL---TERAANALLKAVEEPPPRTVWLLCA------PSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLV 186 (394)
T ss_pred cEEEEEechhhc---CHHHHHHHHHHhhcCCCCCeEEEEE------CChHHChHHHHhhCe-EEECCCCCHHHHHHHHH
Confidence 459999999995 2344566777788765555 47764 236788999999996 99999999999877776
No 330
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.81 E-value=0.00012 Score=72.00 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
....++++||||+|||+++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34679999999999999999999877
No 331
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.81 E-value=9.3e-05 Score=76.57 Aligned_cols=79 Identities=20% Similarity=0.407 Sum_probs=53.7
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc-----------------------cccHHHH
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWF-----------------------GEDEKNV 607 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~-----------------------G~~e~~l 607 (837)
+|+.+..-++++||||+|||+++..++... |...++++..++....+ .+....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 456677789999999999999999998654 67788888865211100 0001123
Q ss_pred HHHHHHHHhcCCeEEEecccccccC
Q 003231 608 RALFTLAAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 608 ~~lf~~A~~~~psVLfIDEID~L~~ 632 (837)
..+...+....+.+|+||-+..+..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 3344445555789999999998864
No 332
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.79 E-value=0.00029 Score=77.68 Aligned_cols=77 Identities=12% Similarity=0.180 Sum_probs=54.8
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEe---------------c-cccc------CCCCCCchhHHHHc
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLG---------------S-RMLE------PEDDCRDVDERLTI 324 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiG---------------s-~~~~------~~~~~~~~d~al~r 324 (837)
.++||++||++. .+.+..+.|+..|+. .|.+.+-+ + ++.+ .|.-....++|+..
T Consensus 134 ~g~illlDEin~---a~p~~~~~L~~lLE~-~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 134 HNVALCFDEYDA---GRPDVMFVIQRVLEA-GGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred CCeEEEechhhc---cCHHHHHHHHHHhcc-CCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 689999999997 256778888888985 22333322 1 1111 12224456999999
Q ss_pred cCCceeeeCCCChHHHHHHHHHH
Q 003231 325 LFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 325 rF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
||-.++.+.-|+.+.-.+|++..
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhh
Confidence 99877899999999999999864
No 333
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.79 E-value=0.00012 Score=79.16 Aligned_cols=157 Identities=19% Similarity=0.143 Sum_probs=82.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hCCc---EEEEeccccccc---------cc---------cccHHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANE--AGAS---FINVSMSTITSK---------WF---------GEDEKNVRALFTLA 614 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~e--lg~~---~i~v~~s~l~s~---------~~---------G~~e~~l~~lf~~A 614 (837)
..+.+.|+|++|+|||+||+.+++. .... .+.++.+.-... .+ ..........+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4677999999999999999999977 3222 222333221110 00 11122233333333
Q ss_pred HhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCC
Q 003231 615 AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 615 ~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P 694 (837)
-...+++|+||+++... ....+...+.. ...+..||.||....... .+... ...+.++..
T Consensus 98 L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~L 157 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVAG-SLGGT-DKVIELEPL 157 (287)
T ss_dssp HCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGGT-THHSC-EEEEECSS-
T ss_pred hccccceeeeeeecccc--------------ccccccccccc----cccccccccccccccccc-ccccc-ccccccccc
Confidence 44458999999998541 11222221111 111245666776542211 11100 256888899
Q ss_pred CHHHHHHHHHHHHhhcC----C-ChhhHHHHHHHcCCCCHHHHHHH
Q 003231 695 SAENREMILKTLLAKEK----V-EDLDFKELAAMTEGYSGSDLKNL 735 (837)
Q Consensus 695 ~~eer~~IL~~~l~~~~----~-~d~dl~~LA~~t~G~sg~DL~~L 735 (837)
+.++..+++........ . .+.....+++.+.|. +-.|..+
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 99999999998876544 1 234467888988874 4444433
No 334
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.76 E-value=0.00019 Score=92.62 Aligned_cols=172 Identities=18% Similarity=0.259 Sum_probs=96.2
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEecccc---c
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASF---INVSMSTI---T 596 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~---i~v~~s~l---~ 596 (837)
.+++++|.+...+.|..++... ....+-+-|+||+|+||||||++++..+..+| +.++...+ .
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~-----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE-----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc-----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 5677999999999998877531 12356789999999999999999988874332 11211000 0
Q ss_pred cccc-------c----ccHHHHH-------------HHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHH
Q 003231 597 SKWF-------G----EDEKNVR-------------ALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMT 652 (837)
Q Consensus 597 s~~~-------G----~~e~~l~-------------~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~ 652 (837)
..+. . -....+. ......-..++.+|+|||++.. .....+..
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~~ 316 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALAG 316 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHHh
Confidence 0000 0 0000001 1111222345678999998742 22233332
Q ss_pred hhccccccCCceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhH----HHHHHHcCC
Q 003231 653 HWDGLLTRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKVEDLDF----KELAAMTEG 726 (837)
Q Consensus 653 ~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl----~~LA~~t~G 726 (837)
..+.. ..+ -.||.||.+. .+.+ ..+..+.++.|+.++..+++..++-....+..++ .++++.+.|
T Consensus 317 ~~~~~--~~G--srIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 317 QTQWF--GSG--SRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGN 387 (1153)
T ss_pred hCccC--CCC--cEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCC
Confidence 22211 122 3455566643 3333 2356788889999999999887765443322232 345666776
Q ss_pred CC
Q 003231 727 YS 728 (837)
Q Consensus 727 ~s 728 (837)
..
T Consensus 388 LP 389 (1153)
T PLN03210 388 LP 389 (1153)
T ss_pred Cc
Confidence 55
No 335
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.75 E-value=3.4e-05 Score=94.61 Aligned_cols=195 Identities=18% Similarity=0.254 Sum_probs=120.8
Q ss_pred cccccchHHHHHHHHHHHcccC-CchhhcCCCCCCC-c-eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc-
Q 003231 525 ADIGALNEIKESLQELVMLPLR-RPDLFKGGLLKPC-R-GILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWF- 600 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~-~~e~~~~~~~~p~-~-~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~- 600 (837)
.++.|.......+..++...-+ ++..|........ . .++++||||+|||+.+..+|.++|+.+++.+.++.-+++.
T Consensus 320 k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l 399 (871)
T KOG1968|consen 320 KALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKEL 399 (871)
T ss_pred HhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHH
Confidence 3455555554455555544211 2222322211111 1 3699999999999999999999999999999987765532
Q ss_pred ----cc--cHHHHHHHH---HH--HHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEE
Q 003231 601 ----GE--DEKNVRALF---TL--AAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669 (837)
Q Consensus 601 ----G~--~e~~l~~lf---~~--A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIa 669 (837)
|. ....+...+ .. .......||++||+|-+.+ .+. ..+..+..... ...+-+|+
T Consensus 400 ~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dR--------g~v~~l~~l~~------ks~~Piv~ 464 (871)
T KOG1968|consen 400 LNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDR--------GGVSKLSSLCK------KSSRPLVC 464 (871)
T ss_pred HhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhh--------hhHHHHHHHHH------hccCCeEE
Confidence 11 111122222 00 0111234999999998865 221 22333333222 12357888
Q ss_pred ecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 670 ATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 670 TTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
|+|........-+.|....+.|+.|+.+.+..-+..++..+.+ .+..++.+...+ ++||++....
T Consensus 465 ~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 465 TCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred EecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHH
Confidence 8998777666555555567899999999999888888877765 677777777766 5577665543
No 336
>PRK08116 hypothetical protein; Validated
Probab=97.73 E-value=0.00035 Score=75.57 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=62.1
Q ss_pred HHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHh
Q 003231 51 QIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALA 130 (837)
Q Consensus 51 ~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA 130 (837)
.++.-+....+|++--+.|||||.. .+....+ ..+|.-.++. +. .....+.+++|+||++.+++.||.|+|
T Consensus 65 ~~~~l~~~s~i~~~~~~~tFdnf~~--~~~~~~a-~~~a~~y~~~--~~----~~~~~~~gl~l~G~~GtGKThLa~aia 135 (268)
T PRK08116 65 RIERLKSNSLLDEKFRNSTFENFLF--DKGSEKA-YKIARKYVKK--FE----EMKKENVGLLLWGSVGTGKTYLAACIA 135 (268)
T ss_pred HHHHHHHhcCCCHHHHhcchhcccC--ChHHHHH-HHHHHHHHHH--HH----hhccCCceEEEECCCCCCHHHHHHHHH
Confidence 3344456678888989999999984 3444332 2222222221 11 112345689999999999999999999
Q ss_pred hhh---CCeEEEeeccccchhhh
Q 003231 131 HFF---ESKLLLLDVNDFSLKMQ 150 (837)
Q Consensus 131 ~~~---~a~ll~ld~~~~~~~~~ 150 (837)
+++ +.+.+.++..+|..++.
T Consensus 136 ~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 136 NELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred HHHHHcCCeEEEEEHHHHHHHHH
Confidence 986 78888888888776553
No 337
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00083 Score=78.88 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=56.1
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.+-||+|||+|.+ +.+..+.|-..|+..+..+++|.. +++...+.+.+..|.. .+++.+|+.++-...++.
T Consensus 116 ~~kVVIIDEad~l---s~~a~naLLk~LEep~~~t~~Il~-----t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~ 186 (504)
T PRK14963 116 GRKVYILDEAHMM---SKSAFNALLKTLEEPPEHVIFILA-----TTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRR 186 (504)
T ss_pred CCeEEEEECcccc---CHHHHHHHHHHHHhCCCCEEEEEE-----cCChhhCChHHhcceE-EEEecCCCHHHHHHHHHH
Confidence 4568999999974 234556666778876677766655 3445678899999996 999999999999888887
Q ss_pred HHH
Q 003231 347 KLE 349 (837)
Q Consensus 347 ~l~ 349 (837)
.+.
T Consensus 187 i~~ 189 (504)
T PRK14963 187 LLE 189 (504)
T ss_pred HHH
Confidence 654
No 338
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0011 Score=81.78 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=59.1
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|. |. ....|.|.+.|+..+..+++|-.+ ++...+-+.|..|.. +|++..++.++-...|+.
T Consensus 120 ~~KV~IIDEad~-lt--~~a~NaLLK~LEEpP~~~~fIl~t-----t~~~kLl~TIrSRc~-~v~F~~l~~~~l~~~L~~ 190 (824)
T PRK07764 120 RYKIFIIDEAHM-VT--PQGFNALLKIVEEPPEHLKFIFAT-----TEPDKVIGTIRSRTH-HYPFRLVPPEVMRGYLER 190 (824)
T ss_pred CceEEEEechhh-cC--HHHHHHHHHHHhCCCCCeEEEEEe-----CChhhhhHHHHhhee-EEEeeCCCHHHHHHHHHH
Confidence 345999999999 43 467788889999999999888763 334457788888986 999999999988888887
Q ss_pred HHHH
Q 003231 347 KLEE 350 (837)
Q Consensus 347 ~l~~ 350 (837)
.+.+
T Consensus 191 il~~ 194 (824)
T PRK07764 191 ICAQ 194 (824)
T ss_pred HHHH
Confidence 6543
No 339
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.67 E-value=0.00051 Score=76.85 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=52.8
Q ss_pred EEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHH
Q 003231 269 VILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
-|++|||+|.+ . .+..+.|-+.++..++.+++|-. +++...+.++|.+|+. .+++.+|+.++...+++..+
T Consensus 119 ~vviidea~~l-~--~~~~~~Ll~~le~~~~~~~lIl~-----~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~ 189 (355)
T TIGR02397 119 KVYIIDEVHML-S--KSAFNALLKTLEEPPEHVVFILA-----TTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKIL 189 (355)
T ss_pred eEEEEeChhhc-C--HHHHHHHHHHHhCCccceeEEEE-----eCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHH
Confidence 48999999984 2 34455566677777777775543 2345567788999996 99999999999988888754
No 340
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.67 E-value=0.00012 Score=90.94 Aligned_cols=137 Identities=25% Similarity=0.336 Sum_probs=90.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc--ccccc-------HHH-HHHHHHHHHhcCCeEEEeccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK--WFGED-------EKN-VRALFTLAAKVSPTIIFVDEV 627 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~--~~G~~-------e~~-l~~lf~~A~~~~psVLfIDEI 627 (837)
..+++||.|.||+|||+|..++|+..|-.+++++.++-..- .+|.. +-. ..+-|-.|.+. ..-+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehh
Confidence 45679999999999999999999999999999998864321 22211 111 22334444443 478899999
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHhhccc---c-------ccCCceEEEEEecCCC------CCCcHHHHHHHHHhhhc
Q 003231 628 DSMLGQRTRVGEHEAMRKIKNEFMTHWDGL---L-------TRNGERILVLAATNRP------FDLDEAIIRRFERRIMV 691 (837)
Q Consensus 628 D~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~---~-------~~~~~~vlVIaTTN~~------~~Ld~aL~rRF~~~I~~ 691 (837)
.... ..++..|-..+|.- . -....++.|+||-|+. ..|+..+++|| .++.+
T Consensus 1621 NLaS------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~ 1687 (4600)
T COG5271 1621 NLAS------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKM 1687 (4600)
T ss_pred hhhH------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEe
Confidence 7431 12333333333321 1 1123568889998874 46899999999 67788
Q ss_pred CCCCHHHHHHHHHHHHh
Q 003231 692 GLPSAENREMILKTLLA 708 (837)
Q Consensus 692 ~~P~~eer~~IL~~~l~ 708 (837)
+..+.++...|...+..
T Consensus 1688 d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1688 DGLTTDDITHIANKMYP 1704 (4600)
T ss_pred cccccchHHHHHHhhCC
Confidence 88777777777665544
No 341
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00064 Score=79.16 Aligned_cols=73 Identities=10% Similarity=0.104 Sum_probs=58.6
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
.-|++|||+|. |. ..+.|.|-+.|+.-+..+.+|.++ ++...+.+.|..|.. .+++..++.++....++..
T Consensus 117 ~KVvIIDEah~-Ls--~~A~NaLLK~LEePp~~v~fIlat-----te~~Kl~~tI~SRc~-~~~f~~l~~~el~~~L~~i 187 (491)
T PRK14964 117 FKVYIIDEVHM-LS--NSAFNALLKTLEEPAPHVKFILAT-----TEVKKIPVTIISRCQ-RFDLQKIPTDKLVEHLVDI 187 (491)
T ss_pred ceEEEEeChHh-CC--HHHHHHHHHHHhCCCCCeEEEEEe-----CChHHHHHHHHHhhe-eeecccccHHHHHHHHHHH
Confidence 34999999998 43 456777888899988888888774 345568889999996 9999999999988888875
Q ss_pred HH
Q 003231 348 LE 349 (837)
Q Consensus 348 l~ 349 (837)
+.
T Consensus 188 a~ 189 (491)
T PRK14964 188 AK 189 (491)
T ss_pred HH
Confidence 54
No 342
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00051 Score=82.53 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=58.8
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.--|++|||+|.+ +.+..|.|-+.|+..+..+++|-. +++...+...|..|.. +|.+..++.++-.+.|+.
T Consensus 119 r~KVIIIDEah~L---T~~A~NALLKtLEEPP~~v~FILa-----Ttd~~KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~ 189 (830)
T PRK07003 119 RFKVYMIDEVHML---TNHAFNAMLKTLEEPPPHVKFILA-----TTDPQKIPVTVLSRCL-QFNLKQMPAGHIVSHLER 189 (830)
T ss_pred CceEEEEeChhhC---CHHHHHHHHHHHHhcCCCeEEEEE-----ECChhhccchhhhheE-EEecCCcCHHHHHHHHHH
Confidence 3468999999994 235566677788888888887766 3456678888999996 999999999999988887
Q ss_pred HHHH
Q 003231 347 KLEE 350 (837)
Q Consensus 347 ~l~~ 350 (837)
.+.+
T Consensus 190 Il~~ 193 (830)
T PRK07003 190 ILGE 193 (830)
T ss_pred HHHH
Confidence 6653
No 343
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00036 Score=82.71 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=59.9
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.--|++|||+|. | +....|.|-+.|+.-++.+++|.. +++...+...|..|.. ++.+..++.++-.+.|+.
T Consensus 124 r~KViIIDEah~-L--s~~AaNALLKTLEEPP~~v~FILa-----Ttep~kLlpTIrSRCq-~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 124 RFKVYMIDEVHM-L--TNHAFNAMLKTLEEPPEHVKFILA-----TTDPQKIPVTVLSRCL-QFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred CceEEEEEChHh-c--CHHHHHHHHHhhccCCCCceEEEE-----eCChHhhhhHHHHHHH-hcccCCCChHHHHHHHHH
Confidence 346999999999 4 345667777789988889888877 4456778899999996 999999999999888887
Q ss_pred HHH
Q 003231 347 KLE 349 (837)
Q Consensus 347 ~l~ 349 (837)
.+.
T Consensus 195 Il~ 197 (700)
T PRK12323 195 ILG 197 (700)
T ss_pred HHH
Confidence 664
No 344
>PRK06893 DNA replication initiation factor; Validated
Probab=97.64 E-value=0.00022 Score=75.32 Aligned_cols=77 Identities=9% Similarity=0.175 Sum_probs=51.4
Q ss_pred CcEEEEEccchhHhhhc----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHH
Q 003231 267 SSVILYLRDVDKLLFQS----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETH 340 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~r 340 (837)
+.-+|+||||+.+ .+. ..+++++...-++ .+.++|+++++.-.. ....+++|..|+. ..+++++|+++++
T Consensus 91 ~~dlLilDDi~~~-~~~~~~~~~l~~l~n~~~~~-~~~illits~~~p~~--l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 91 QQDLVCLDDLQAV-IGNEEWELAIFDLFNRIKEQ-GKTLLLISADCSPHA--LSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred cCCEEEEeChhhh-cCChHHHHHHHHHHHHHHHc-CCcEEEEeCCCChHH--ccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 3468999999984 333 2366767665553 124567776432211 1224477888774 4889999999999
Q ss_pred HHHHHHH
Q 003231 341 LVNWKAK 347 (837)
Q Consensus 341 l~Ilk~~ 347 (837)
.+||+..
T Consensus 167 ~~iL~~~ 173 (229)
T PRK06893 167 IIVLQRN 173 (229)
T ss_pred HHHHHHH
Confidence 9999974
No 345
>PHA00729 NTP-binding motif containing protein
Probab=97.64 E-value=6.5e-05 Score=78.64 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGAS 586 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~ 586 (837)
.+++|+|+||||||++|.++|..++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999999999998633
No 346
>PLN03025 replication factor C subunit; Provisional
Probab=97.61 E-value=0.00044 Score=76.64 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=50.8
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.+-|++|||+|.+-..+ -+.|...++..++..++|=. .|....+.++|..|.. .|++.+|++++....++.
T Consensus 99 ~~kviiiDE~d~lt~~a---q~aL~~~lE~~~~~t~~il~-----~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~ 169 (319)
T PLN03025 99 RHKIVILDEADSMTSGA---QQALRRTMEIYSNTTRFALA-----CNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMK 169 (319)
T ss_pred CeEEEEEechhhcCHHH---HHHHHHHHhcccCCceEEEE-----eCCccccchhHHHhhh-cccCCCCCHHHHHHHHHH
Confidence 46799999999954433 34455667766655443222 2344567788998885 999999999999888886
Q ss_pred H
Q 003231 347 K 347 (837)
Q Consensus 347 ~ 347 (837)
.
T Consensus 170 i 170 (319)
T PLN03025 170 V 170 (319)
T ss_pred H
Confidence 4
No 347
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00061 Score=81.61 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=56.3
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
.-|++|||+|. |. ....+.|.+.|+..++.+.+|.++ ++...+...|..|+. .|.+..++.++-...|+..
T Consensus 120 ~KVIIIDEad~-Ls--~~A~NALLKtLEEPp~~v~fILaT-----td~~kL~~TIrSRC~-~f~f~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 120 YKVYIIDEVHM-LS--KSAFNAMLKTLEEPPEHVKFILAT-----TDPHKVPVTVLSRCL-QFVLRNMTAQQVADHLAHV 190 (709)
T ss_pred cEEEEEECccc-cC--HHHHHHHHHHHHhCCCCcEEEEEe-----CCccccchHHHHHHh-hhhcCCCCHHHHHHHHHHH
Confidence 35999999998 43 345677778888888888877764 334556677777884 8999999999999988876
Q ss_pred HHH
Q 003231 348 LEE 350 (837)
Q Consensus 348 l~~ 350 (837)
+.+
T Consensus 191 l~k 193 (709)
T PRK08691 191 LDS 193 (709)
T ss_pred HHH
Confidence 654
No 348
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0007 Score=76.44 Aligned_cols=163 Identities=20% Similarity=0.220 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchhhhhhcCCC
Q 003231 77 LSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLKMQNKYGCA 156 (837)
Q Consensus 77 lse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~~~~~~g~~ 156 (837)
+.+..|..+++-..-.++.+++ |.+.=-+=-|+-||+|||++++..|+=|+|+|++ .|++||..
T Consensus 205 Md~~~K~~I~~Dl~~F~k~k~~--YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~-----ydIydLeL--------- 268 (457)
T KOG0743|consen 205 MDPDLKERIIDDLDDFIKGKDF--YKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN-----YDIYDLEL--------- 268 (457)
T ss_pred cChhHHHHHHHHHHHHHhcchH--HHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC-----CceEEeee---------
Confidence 4688999999999999999999 5555557789999999999999999999999855 67777642
Q ss_pred CCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcccccCCCCCCCC
Q 003231 157 RKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSISSLGASPSP 236 (837)
Q Consensus 157 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (837)
+++ .
T Consensus 269 ----------t~v--------------------------------~---------------------------------- 272 (457)
T KOG0743|consen 269 ----------TEV--------------------------------K---------------------------------- 272 (457)
T ss_pred ----------ccc--------------------------------c----------------------------------
Confidence 110 0
Q ss_pred CCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHH-------HH-----HHHHHHHHhccCCEEEE
Q 003231 237 APLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQR-------FY-----NLLDKLLKKLSGSVLVL 304 (837)
Q Consensus 237 ~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~-------~~-----~~lk~~l~~l~g~v~ii 304 (837)
.=..|.+++... .+..||.|-|||..+.-+.+ +. =.|-++|+-++|---.+
T Consensus 273 ---------------~n~dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc 335 (457)
T KOG0743|consen 273 ---------------LDSDLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC 335 (457)
T ss_pred ---------------CcHHHHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccC
Confidence 000156666554 35579999999998843211 11 11334455444422222
Q ss_pred ec-cc-ccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHH
Q 003231 305 GS-RM-LEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 305 Gs-~~-~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
|. ++ +-.||.....|.||.| |+-.||.++-=..++-....+..|
T Consensus 336 g~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 336 GDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred CCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 21 11 1236777889999999 999999999888877666666544
No 349
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00087 Score=81.98 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=59.3
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.--|++|||+|.+ +.++.|.|-+.|+.-++.+++|++|| +...+...|..|.. ++.+++++.++-...|+.
T Consensus 119 k~KViIIDEAh~L---T~eAqNALLKtLEEPP~~vrFILaTT-----e~~kLl~TIlSRCq-~f~fkpLs~eEI~~~L~~ 189 (944)
T PRK14949 119 RFKVYLIDEVHML---SRSSFNALLKTLEEPPEHVKFLLATT-----DPQKLPVTVLSRCL-QFNLKSLTQDEIGTQLNH 189 (944)
T ss_pred CcEEEEEechHhc---CHHHHHHHHHHHhccCCCeEEEEECC-----CchhchHHHHHhhe-EEeCCCCCHHHHHHHHHH
Confidence 3469999999994 45677788889999899999888743 33457778887885 999999999998888887
Q ss_pred HHHH
Q 003231 347 KLEE 350 (837)
Q Consensus 347 ~l~~ 350 (837)
.+..
T Consensus 190 il~~ 193 (944)
T PRK14949 190 ILTQ 193 (944)
T ss_pred HHHH
Confidence 5543
No 350
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.58 E-value=8e-05 Score=86.76 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=48.0
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-g~~~i~v~~ 592 (837)
-|+|++|+++++++|.+.+......-+ .....++|.||||+|||+||+.||+.+ ..+++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~-------~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLE-------EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcC-------CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 588999999999999888743211111 234579999999999999999999988 356666654
No 351
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.57 E-value=0.0003 Score=78.33 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=34.8
Q ss_pred CCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccc
Q 003231 108 ASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 108 ~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~ 146 (837)
+.+.+||-||+++++++|||+||+.++.++..+..++..
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 457789999999999999999999999999998887654
No 352
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.55 E-value=0.00048 Score=77.88 Aligned_cols=99 Identities=23% Similarity=0.399 Sum_probs=63.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc--------ccHHHHHHHHHHHHhc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK------WFG--------EDEKNVRALFTLAAKV 617 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~------~~G--------~~e~~l~~lf~~A~~~ 617 (837)
++.+..-++|+||||+|||+|+..+|..+ +.++++++..+-... .+| ..+..+..++..+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45667789999999999999999998765 457778876542221 011 1123355666666777
Q ss_pred CCeEEEecccccccCCCC--CcchHHHHHHHHHHHHHh
Q 003231 618 SPTIIFVDEVDSMLGQRT--RVGEHEAMRKIKNEFMTH 653 (837)
Q Consensus 618 ~psVLfIDEID~L~~~r~--~~~~~~~~~~i~~~Ll~~ 653 (837)
.|.+|+||+|..+..... ..+.....+.....|...
T Consensus 158 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~l 195 (372)
T cd01121 158 KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRF 195 (372)
T ss_pred CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHH
Confidence 899999999998864321 122233344444444443
No 353
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.55 E-value=8.6e-05 Score=77.71 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=57.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc--cc-c---c----ccccHHHHHHHHHHHH--hcCCeEEEecc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI--TS-K---W----FGEDEKNVRALFTLAA--KVSPTIIFVDE 626 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l--~s-~---~----~G~~e~~l~~lf~~A~--~~~psVLfIDE 626 (837)
+..+||||+||+|||++|+.++. ...++..+.+.- .+ . . ....-..+...+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 45699999999999999999973 233333443210 00 0 0 0011122223333322 24578999999
Q ss_pred cccccC------CCCC-c--chHHHHHHHHHHHHHhhccccccCCceEEEEEec
Q 003231 627 VDSMLG------QRTR-V--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAAT 671 (837)
Q Consensus 627 ID~L~~------~r~~-~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTT 671 (837)
|+.|.. .+.. . ........+.+.|+..+..+.. .+.+|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~-~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE-SNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh-CCCcEEEEEee
Confidence 998843 1111 0 0111222344455555555533 45556666644
No 354
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.54 E-value=0.0012 Score=69.42 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=46.7
Q ss_pred CcEEEEEccchhHhhhc--HHHHHHHHHHHHhccCC-EEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHHH
Q 003231 267 SSVILYLRDVDKLLFQS--QRFYNLLDKLLKKLSGS-VLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETHL 341 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~--~~~~~~lk~~l~~l~g~-v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~rl 341 (837)
.+-+|+|||+|. +... ..+++.+...-++ +. ++++.++... ........|..||. ..|++++|+++++.
T Consensus 90 ~~~~liiDdi~~-l~~~~~~~L~~~~~~~~~~--~~~~vl~~~~~~~---~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~ 163 (227)
T PRK08903 90 EAELYAVDDVER-LDDAQQIALFNLFNRVRAH--GQGALLVAGPAAP---LALPLREDLRTRLGWGLVYELKPLSDADKI 163 (227)
T ss_pred cCCEEEEeChhh-cCchHHHHHHHHHHHHHHc--CCcEEEEeCCCCH---HhCCCCHHHHHHHhcCeEEEecCCCHHHHH
Confidence 345799999997 4432 2355655544333 55 3555443211 12235677887773 59999999999888
Q ss_pred HHHHH
Q 003231 342 VNWKA 346 (837)
Q Consensus 342 ~Ilk~ 346 (837)
.+++.
T Consensus 164 ~~l~~ 168 (227)
T PRK08903 164 AALKA 168 (227)
T ss_pred HHHHH
Confidence 88775
No 355
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.54 E-value=0.00041 Score=70.08 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=46.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc------ccc-----------------------cH-----
Q 003231 562 ILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW------FGE-----------------------DE----- 604 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~------~G~-----------------------~e----- 604 (837)
+|++||||||||+++..++.+. |.+++.++..+-.... +|. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999987654 6677777654321110 010 00
Q ss_pred HHHHHHHHHHHhcCCeEEEecccccccC
Q 003231 605 KNVRALFTLAAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 605 ~~l~~lf~~A~~~~psVLfIDEID~L~~ 632 (837)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123444455566889999999988754
No 356
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0011 Score=79.06 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=55.9
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-||+|||+|.+ . .+..+.|-+.|+..++++++|..+ ++...+...|..|+. .|+++.+++++-..+|+.
T Consensus 119 ~~kVIIIDEad~L-t--~~a~naLLk~LEEP~~~~ifILaT-----t~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~ 189 (624)
T PRK14959 119 RYKVFIIDEAHML-T--REAFNALLKTLEEPPARVTFVLAT-----TEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTK 189 (624)
T ss_pred CceEEEEEChHhC-C--HHHHHHHHHHhhccCCCEEEEEec-----CChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHH
Confidence 4569999999994 2 344566677788777888877763 344566777888886 899999999999888886
Q ss_pred HHH
Q 003231 347 KLE 349 (837)
Q Consensus 347 ~l~ 349 (837)
.+.
T Consensus 190 il~ 192 (624)
T PRK14959 190 VLG 192 (624)
T ss_pred HHH
Confidence 554
No 357
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.50 E-value=9.5e-05 Score=69.35 Aligned_cols=31 Identities=42% Similarity=0.764 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSM 592 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~ 592 (837)
|+|.||||+||||+|+.||+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876654
No 358
>PRK06620 hypothetical protein; Validated
Probab=97.50 E-value=0.00053 Score=71.72 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=54.4
Q ss_pred EEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc--eeeeCCCChHHHHHHHHH
Q 003231 269 VILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY--NLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~--~IeI~~P~~e~rl~Ilk~ 346 (837)
-+|+|||||.| .+ ..+.+++....+. |..++|+|++...+ ..+ ++|..||.+ .++|++|+++.+..+++.
T Consensus 87 d~lliDdi~~~-~~-~~lf~l~N~~~e~--g~~ilits~~~p~~---l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 87 NAFIIEDIENW-QE-PALLHIFNIINEK--QKYLLLTSSDKSRN---FTL-PDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred CEEEEeccccc-hH-HHHHHHHHHHHhc--CCEEEEEcCCCccc---cch-HHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 47899999964 22 3577777777775 88899999776552 346 788888843 699999999999999987
Q ss_pred H
Q 003231 347 K 347 (837)
Q Consensus 347 ~ 347 (837)
.
T Consensus 159 ~ 159 (214)
T PRK06620 159 H 159 (214)
T ss_pred H
Confidence 4
No 359
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.50 E-value=0.00058 Score=79.22 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=55.0
Q ss_pred CcEEEEEccchhHhhhc----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHH
Q 003231 267 SSVILYLRDVDKLLFQS----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETH 340 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~r 340 (837)
++-+|.|||++. +.+. ..+++++....++ |.-+|+.|...-+ .....+++|..||. ..++|++|+.++|
T Consensus 206 ~~dvLiIDDiq~-l~~k~~~~e~lf~l~N~~~~~--~k~iIltsd~~P~--~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 206 QNDVLIIDDVQF-LSYKEKTNEIFFTIFNNFIEN--DKQLFFSSDKSPE--LLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred cCCEEEEecccc-ccCCHHHHHHHHHHHHHHHHc--CCcEEEECCCCHH--HHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 345899999997 4433 3488888888775 5555665422211 12245788888885 5788999999999
Q ss_pred HHHHHHHHH
Q 003231 341 LVNWKAKLE 349 (837)
Q Consensus 341 l~Ilk~~l~ 349 (837)
..|++..++
T Consensus 281 ~~iL~~~~~ 289 (450)
T PRK14087 281 TAIIKKEIK 289 (450)
T ss_pred HHHHHHHHH
Confidence 999998543
No 360
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.48 E-value=0.00052 Score=71.95 Aligned_cols=40 Identities=33% Similarity=0.548 Sum_probs=33.5
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
+++.+..-++++||||+|||++|..+|... +.+.+++++.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 355667779999999999999999998755 7788888877
No 361
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.48 E-value=0.00069 Score=78.52 Aligned_cols=99 Identities=25% Similarity=0.403 Sum_probs=65.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc------ccc--------cHHHHHHHHHHHHhc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW------FGE--------DEKNVRALFTLAAKV 617 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~------~G~--------~e~~l~~lf~~A~~~ 617 (837)
++.+...++|+||||+|||+|+..+|... +.++++++..+-.... +|. .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 55667789999999999999999998765 6788888876533211 111 122355666667777
Q ss_pred CCeEEEecccccccCCCCC--cchHHHHHHHHHHHHHh
Q 003231 618 SPTIIFVDEVDSMLGQRTR--VGEHEAMRKIKNEFMTH 653 (837)
Q Consensus 618 ~psVLfIDEID~L~~~r~~--~~~~~~~~~i~~~Ll~~ 653 (837)
.|.+|+||++..+...... .+.....+.....|...
T Consensus 156 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 8999999999988653211 22333344444444443
No 362
>PF14516 AAA_35: AAA-like domain
Probab=97.48 E-value=0.0035 Score=70.01 Aligned_cols=168 Identities=15% Similarity=0.220 Sum_probs=93.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-------------------------------
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGE------------------------------- 602 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~------------------------------- 602 (837)
++...+.+.||..+|||++...+.+.+ |...+.+++..+....+..
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 356789999999999999999987666 7888888887653321000
Q ss_pred cHHHHHHHHHHH---HhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc-----CCceEEEEEecCCC
Q 003231 603 DEKNVRALFTLA---AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR-----NGERILVLAATNRP 674 (837)
Q Consensus 603 ~e~~l~~lf~~A---~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~-----~~~~vlVIaTTN~~ 674 (837)
........|+.. ....|-||+|||||.++... .+...|+..+..+... .-.++.+|.+....
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~----------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~ 178 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP----------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTE 178 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc----------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcc
Confidence 111223333321 12357899999999997532 1112222222222211 11233333222221
Q ss_pred CCCcHHH-HH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 003231 675 FDLDEAI-IR--RFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSDLKNLCV 737 (837)
Q Consensus 675 ~~Ld~aL-~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~DL~~L~~ 737 (837)
..+.... .+ .+...+.++.-+.++...+++.+-.. .....++.|-..+.|.. -=+..+|.
T Consensus 179 ~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~~~~l~~~tgGhP-~Lv~~~~~ 241 (331)
T PF14516_consen 179 DYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQLEQLMDWTGGHP-YLVQKACY 241 (331)
T ss_pred cccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHHHHHHHHHHCCCH-HHHHHHHH
Confidence 1111100 01 22345677777888888877765322 35555899999999864 33444443
No 363
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.47 E-value=0.00069 Score=74.86 Aligned_cols=79 Identities=27% Similarity=0.277 Sum_probs=53.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------cccccHHHHHHHHHHHH
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK----------------WFGEDEKNVRALFTLAA 615 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~----------------~~G~~e~~l~~lf~~A~ 615 (837)
++.+.+.++|+||||||||+||..++.+. |.+.+.+++...... .....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45667789999999999999999887655 677777776542221 01112333333334445
Q ss_pred hcCCeEEEecccccccCC
Q 003231 616 KVSPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~~ 633 (837)
...+.+|+||-+-.+.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999988753
No 364
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0013 Score=78.37 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=57.8
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|.+ +..+.|.|.+.|+..+..+++|.+|+ ++..+...|..|.. .+++.+|+.++-...++.
T Consensus 119 ~~kViIIDE~~~L---t~~a~naLLKtLEepp~~~ifIlatt-----~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 119 KYKVYIIDEVHML---STGAFNALLKTLEEPPAHVIFILATT-----EPHKIPATILSRCQ-RFDFKRISVEDIVERLKY 189 (559)
T ss_pred CeEEEEEECcccC---CHHHHHHHHHHhcCCCCCeEEEEEeC-----ChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHH
Confidence 4569999999984 23466677778888888888777643 35668889999996 999999999988888877
Q ss_pred HHH
Q 003231 347 KLE 349 (837)
Q Consensus 347 ~l~ 349 (837)
.+.
T Consensus 190 i~~ 192 (559)
T PRK05563 190 ILD 192 (559)
T ss_pred HHH
Confidence 554
No 365
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.47 E-value=0.0011 Score=62.73 Aligned_cols=39 Identities=28% Similarity=0.476 Sum_probs=33.4
Q ss_pred CCCceEeecChhHHHHHHHHHHhhhh---CCeEEEeeccccc
Q 003231 108 ASRTILLSGPAELYQQMLAKALAHFF---ESKLLLLDVNDFS 146 (837)
Q Consensus 108 ~~~~ILL~gP~e~yq~~LakALA~~~---~a~ll~ld~~~~~ 146 (837)
..+.|+++||+++++++|+++++++. +.+++.++...+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 45679999999999999999999998 8888888776654
No 366
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0034 Score=73.89 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=54.3
Q ss_pred EEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHH
Q 003231 269 VILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
-|++|||+|. |. .++.|.|-+.|+..+..+.+|.+|| +...+...|..|.. .+++..++.++-...++..+
T Consensus 121 kV~iIDE~~~-ls--~~a~naLLk~LEepp~~~~fIlatt-----d~~kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 121 KVYLIDEVHM-LS--GHSFNALLKTLEEPPSHVKFILATT-----DHHKLPVTVLSRCL-QFHLAQLPPLQIAAHCQHLL 191 (509)
T ss_pred EEEEEEChHh-cC--HHHHHHHHHHHhccCCCeEEEEEEC-----ChHhchHHHHHHhh-hhhcCCCCHHHHHHHHHHHH
Confidence 4899999999 43 3456777789999888998888753 34456666888885 89999988887776666554
Q ss_pred H
Q 003231 349 E 349 (837)
Q Consensus 349 ~ 349 (837)
.
T Consensus 192 ~ 192 (509)
T PRK14958 192 K 192 (509)
T ss_pred H
Confidence 3
No 367
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0015 Score=77.55 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=57.8
Q ss_pred EEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHH
Q 003231 270 ILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 270 Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
|++|||+|. |. ..+.+.|-+.|+..++.+++|..+ ++...+...|.+|+. .+++.+|+.++....++..+.
T Consensus 122 VIIIDEad~-Lt--~~A~NaLLKtLEEPp~~tvfIL~T-----t~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 122 VYIIDEAHM-LS--TSAWNALLKTLEEPPKHVVFIFAT-----TEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred EEEEechHh-CC--HHHHHHHHHHHHhCCCcEEEEEEC-----CChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHH
Confidence 899999998 43 346677888899888888877764 345678889999997 999999999999888887654
Q ss_pred H
Q 003231 350 E 350 (837)
Q Consensus 350 ~ 350 (837)
+
T Consensus 193 k 193 (605)
T PRK05896 193 K 193 (605)
T ss_pred H
Confidence 3
No 368
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0037 Score=74.84 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhcCCc-----EEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC
Q 003231 253 LQSLYKVLVSITETSS-----VILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP 327 (837)
Q Consensus 253 ~~~L~~v~~~~~~~~p-----~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~ 327 (837)
|+.+.+++... ...| -|++|||+|. |. .+.+|.|.+.|+..++.+.+|..| ++...+...|..|..
T Consensus 106 Vd~iReli~~~-~~~p~~g~~KV~IIDEvh~-Ls--~~a~NaLLKtLEEPP~~~~fIL~T-----td~~kil~TIlSRc~ 176 (618)
T PRK14951 106 VDEVQQLLEQA-VYKPVQGRFKVFMIDEVHM-LT--NTAFNAMLKTLEEPPEYLKFVLAT-----TDPQKVPVTVLSRCL 176 (618)
T ss_pred HHHHHHHHHHH-HhCcccCCceEEEEEChhh-CC--HHHHHHHHHhcccCCCCeEEEEEE-----CCchhhhHHHHHhce
Confidence 44555555443 2234 4999999999 43 345777888899888888877664 234456677888885
Q ss_pred ceeeeCCCChHHHHHHHHHHHH
Q 003231 328 YNLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 328 ~~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
+|++..++.++-...|+..+.
T Consensus 177 -~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 177 -QFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred -eeecCCCCHHHHHHHHHHHHH
Confidence 999999999998888886654
No 369
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0044 Score=74.45 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=58.9
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.--|++|||+|. |. ....|.|-+.|+.-++.+++|.+|| +...+...|..|.. .|.++.++.++-...|+.
T Consensus 119 ~~KV~IIDEah~-Ls--~~a~NALLKtLEEPp~~v~FIL~Tt-----~~~kLl~TI~SRC~-~~~f~~Ls~~ei~~~L~~ 189 (647)
T PRK07994 119 RFKVYLIDEVHM-LS--RHSFNALLKTLEEPPEHVKFLLATT-----DPQKLPVTILSRCL-QFHLKALDVEQIRQQLEH 189 (647)
T ss_pred CCEEEEEechHh-CC--HHHHHHHHHHHHcCCCCeEEEEecC-----CccccchHHHhhhe-EeeCCCCCHHHHHHHHHH
Confidence 345999999998 43 4567777789999889999888743 34567788888885 999999999999888887
Q ss_pred HHH
Q 003231 347 KLE 349 (837)
Q Consensus 347 ~l~ 349 (837)
.+.
T Consensus 190 il~ 192 (647)
T PRK07994 190 ILQ 192 (647)
T ss_pred HHH
Confidence 654
No 370
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.40 E-value=0.00057 Score=65.02 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=48.3
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...++..++.. |.||.-+++.+..++...+..+. .+.|--+-|+||||||||.+++.||+.
T Consensus 16 ~~~L~~~L~~~-------------l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 16 ITGLEKDLQRN-------------LFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHHH-------------ccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 44567777666 99999999999999987665432 122345669999999999999999998
Q ss_pred h
Q 003231 583 A 583 (837)
Q Consensus 583 l 583 (837)
+
T Consensus 77 l 77 (127)
T PF06309_consen 77 L 77 (127)
T ss_pred H
Confidence 6
No 371
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.40 E-value=0.0003 Score=79.60 Aligned_cols=174 Identities=27% Similarity=0.333 Sum_probs=96.0
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-c---cccccccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVS-M---STITSKWFGE 602 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~-~---s~l~s~~~G~ 602 (837)
|.|.+++|+.+.-++...- +..+=.+..++..-++||.|.|||.|+-|.+-+-+-..+.++.-. . ..|.....-.
T Consensus 333 IfG~~DiKkAiaClLFgGs-rK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD 411 (729)
T KOG0481|consen 333 IFGHEDIKKAIACLLFGGS-RKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRD 411 (729)
T ss_pred hcCchhHHHHHHHHhhcCc-cccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEec
Confidence 8999999999988776532 222222333344567999999999999999988765533332210 0 0111000000
Q ss_pred cHHHHHHHHHH--H-HhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC----
Q 003231 603 DEKNVRALFTL--A-AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF---- 675 (837)
Q Consensus 603 ~e~~l~~lf~~--A-~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~---- 675 (837)
.. .+.++-+ | --...+|++|||+|+|-. .+...-++++.+.. +-..--|+...-+.+.-|+|++|.++
T Consensus 412 ~~--tReFylEGGAMVLADgGVvCIDEFDKMre-~DRVAIHEAMEQQT--ISIAKAGITT~LNSRtSVLAAANpvfGRyD 486 (729)
T KOG0481|consen 412 PS--TREFYLEGGAMVLADGGVVCIDEFDKMRE-DDRVAIHEAMEQQT--ISIAKAGITTTLNSRTSVLAAANPVFGRYD 486 (729)
T ss_pred CC--cceEEEecceEEEecCCEEEeehhhccCc-hhhhHHHHHHHhhh--HHHhhhcceeeecchhhhhhhcCCcccccc
Confidence 00 0000000 0 011348999999999833 12222334333221 11222355555667788999999852
Q ss_pred ---------CCcHHHHHHHHHhhhcCCCCHHHH-HHHHHHH
Q 003231 676 ---------DLDEAIIRRFERRIMVGLPSAENR-EMILKTL 706 (837)
Q Consensus 676 ---------~Ld~aL~rRF~~~I~~~~P~~eer-~~IL~~~ 706 (837)
++-+.+++|||.++.+..-..+++ ..|.++.
T Consensus 487 d~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHV 527 (729)
T KOG0481|consen 487 DTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHV 527 (729)
T ss_pred ccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHh
Confidence 345899999998887755443333 3333433
No 372
>PRK05642 DNA replication initiation factor; Validated
Probab=97.39 E-value=0.00093 Score=70.84 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=53.4
Q ss_pred EEEEccchhHhhhc----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHHHHH
Q 003231 270 ILYLRDVDKLLFQS----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETHLVN 343 (837)
Q Consensus 270 Ilfi~di~~~l~~~----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~rl~I 343 (837)
+|+|||++. +.+. .++++++....++ |..+++++++-.. ......++|..||. ..++|++|++++++.|
T Consensus 100 ~LiiDDi~~-~~~~~~~~~~Lf~l~n~~~~~--g~~ilits~~~p~--~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 100 LVCLDDLDV-IAGKADWEEALFHLFNRLRDS--GRRLLLAASKSPR--ELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred EEEEechhh-hcCChHHHHHHHHHHHHHHhc--CCEEEEeCCCCHH--HcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 688999997 4432 3488888776665 7888998865432 22334678888883 3888999999999999
Q ss_pred HHH
Q 003231 344 WKA 346 (837)
Q Consensus 344 lk~ 346 (837)
++.
T Consensus 175 l~~ 177 (234)
T PRK05642 175 LQL 177 (234)
T ss_pred HHH
Confidence 995
No 373
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.38 E-value=0.0015 Score=66.47 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=52.4
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|.+ . .++.+.|.+.|+..+....+|-. +++...+.++|..|.. .|++.+|+.++..++++.
T Consensus 96 ~~kviiide~~~l-~--~~~~~~Ll~~le~~~~~~~~il~-----~~~~~~l~~~i~sr~~-~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 96 GRRVVIIEDAERM-N--EAAANALLKTLEEPPPNTLFILI-----TPSPEKLLPTIRSRCQ-VLPFPPLSEEALLQWLIR 166 (188)
T ss_pred CeEEEEEechhhh-C--HHHHHHHHHHhcCCCCCeEEEEE-----ECChHhChHHHHhhcE-EeeCCCCCHHHHHHHHHH
Confidence 4568999999994 3 23455566777776655554433 2234678999999996 999999999999888876
No 374
>PRK08118 topology modulation protein; Reviewed
Probab=97.37 E-value=0.00038 Score=69.94 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=29.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSM 592 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~ 592 (837)
.|+++||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999988774
No 375
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.36 E-value=0.0026 Score=69.75 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=51.1
Q ss_pred CcEEEEEccchhHhhhc-HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQS-QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~-~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
.-.||||||||. |..+ +|. |-|+.++ |.|..||+||-. -.+-+..||..|-+ .|....=..+.-..||.
T Consensus 222 rkTilFiDEiHR-FNksQQD~---fLP~VE~--G~I~lIGATTEN---PSFqln~aLlSRC~-VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 222 RKTILFIDEIHR-FNKSQQDT---FLPHVEN--GDITLIGATTEN---PSFQLNAALLSRCR-VFVLEKLPVNAVVTILM 291 (554)
T ss_pred ceeEEEeHHhhh-hhhhhhhc---ccceecc--CceEEEecccCC---CccchhHHHHhccc-eeEeccCCHHHHHHHHH
Confidence 458999999999 4444 443 5688887 999999998843 46788999999887 55544444555556666
Q ss_pred H
Q 003231 346 A 346 (837)
Q Consensus 346 ~ 346 (837)
.
T Consensus 292 r 292 (554)
T KOG2028|consen 292 R 292 (554)
T ss_pred H
Confidence 4
No 376
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.36 E-value=0.00018 Score=69.40 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=31.2
Q ss_pred eEeecChhHHHHHHHHHHhhhhCCeEEEeeccccc
Q 003231 112 ILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 112 ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~ 146 (837)
|||.||+++++..||++||+-++.+++.+-.+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~ 36 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDT 36 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEecccc
Confidence 89999999999999999999999999998776653
No 377
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0022 Score=77.12 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhc----CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc
Q 003231 253 LQSLYKVLVSITE----TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 253 ~~~L~~v~~~~~~----~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~ 328 (837)
++.+.+++..... ...-|++|||+|. | +.++.+.|-+.|+.-++.+++|+.++ +...+-+.|..|..
T Consensus 103 vd~IReii~~a~~~p~~~~~KViIIDEad~-L--t~~a~naLLK~LEePp~~tvfIL~t~-----~~~~llpTIrSRc~- 173 (620)
T PRK14948 103 VDNIRELIERAQFAPVQARWKVYVIDECHM-L--STAAFNALLKTLEEPPPRVVFVLATT-----DPQRVLPTIISRCQ- 173 (620)
T ss_pred HHHHHHHHHHHhhChhcCCceEEEEECccc-c--CHHHHHHHHHHHhcCCcCeEEEEEeC-----ChhhhhHHHHhhee-
Confidence 4455555543321 1235899999998 4 34577778888998888998888743 34457778888885
Q ss_pred eeeeCCCChHHHHHHHHHHHH
Q 003231 329 NLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
.+++..|+.++-...++....
T Consensus 174 ~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 174 RFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred EEEecCCCHHHHHHHHHHHHH
Confidence 999999988877766665443
No 378
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0017 Score=77.59 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=57.6
Q ss_pred EEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHH
Q 003231 269 VILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
=|++|||+|. |. ..+.|.|.+.|+..++.+++|..| ++...+.+.|..|.. .|++..++.++-...++..+
T Consensus 121 KVvIIdev~~-Lt--~~a~naLLk~LEepp~~~~fIl~t-----~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 121 KIFIIDEVHM-LS--TNAFNALLKTLEEPPPHVKFIFAT-----TEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred eEEEEEChhh-CC--HHHHHHHHHHHHcCCCCeEEEEEe-----CChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHH
Confidence 3899999998 43 456788889999988888887764 345678889999996 99999999888777777655
Q ss_pred HH
Q 003231 349 EE 350 (837)
Q Consensus 349 ~~ 350 (837)
.+
T Consensus 192 ~~ 193 (576)
T PRK14965 192 DQ 193 (576)
T ss_pred HH
Confidence 43
No 379
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.34 E-value=0.001 Score=76.22 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=24.9
Q ss_pred CCCceEeecChhHHHHHHHHHHhhhhC
Q 003231 108 ASRTILLSGPAELYQQMLAKALAHFFE 134 (837)
Q Consensus 108 ~~~~ILL~gP~e~yq~~LakALA~~~~ 134 (837)
..+.|+|+||+++++++|||+||+.+.
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999999999875
No 380
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.34 E-value=0.0014 Score=72.14 Aligned_cols=101 Identities=18% Similarity=0.366 Sum_probs=58.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEeccccccc-------cccccHHHHHHHHHHHHhcCCeEEEecccc
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASF-INVSMSTITSK-------WFGEDEKNVRALFTLAAKVSPTIIFVDEVD 628 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~-i~v~~s~l~s~-------~~G~~e~~l~~lf~~A~~~~psVLfIDEID 628 (837)
.+++|+.|+||-|+|||+|.-..-..+..+- .++....++.. ..|+.. -+..+-.... ....||+|||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl~~iA~~~~-~~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PLPPIADELA-AETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-ccHHHHHHHH-hcCCEEEeeeee
Confidence 5789999999999999999999988774422 22332222211 123321 1111111111 123699999997
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC
Q 003231 629 SMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP 674 (837)
Q Consensus 629 ~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~ 674 (837)
- ...+.--.+.+++++|+. ..|++++|+|.+
T Consensus 141 V-----tDI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~~ 171 (367)
T COG1485 141 V-----TDIADAMILGRLLEALFA----------RGVVLVATSNTA 171 (367)
T ss_pred e-----cChHHHHHHHHHHHHHHH----------CCcEEEEeCCCC
Confidence 3 112223334455555532 248999999974
No 381
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.31 E-value=0.0013 Score=69.53 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=49.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc-----------------------c
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK------WFG-----------------------E 602 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~------~~G-----------------------~ 602 (837)
++.+...+++.||||||||++|..++... |...++++..+-... .+| .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 34566789999999999999986665544 566777665421110 000 0
Q ss_pred --cHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003231 603 --DEKNVRALFTLAAKVSPTIIFVDEVDSML 631 (837)
Q Consensus 603 --~e~~l~~lf~~A~~~~psVLfIDEID~L~ 631 (837)
....+..+...+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 12334445555555678999999998765
No 382
>PRK07261 topology modulation protein; Provisional
Probab=97.30 E-value=0.00054 Score=69.06 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=29.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSMST 594 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~ 594 (837)
-++++|+||+||||||+.++..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999999988776543
No 383
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0034 Score=74.23 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=58.5
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|. |. ..+.+.|-+.|+..++.+.+|.+|| +...+...|..|.. .+++.+++.++-...++.
T Consensus 119 ~~kViIIDEa~~-ls--~~a~naLLK~LEepp~~v~fIL~Tt-----d~~kil~tI~SRc~-~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 119 RYKVYLIDEVHM-LS--KQSFNALLKTLEEPPEYVKFILATT-----DYHKIPVTILSRCI-QLHLKHISQADIKDQLKI 189 (546)
T ss_pred CcEEEEEechhh-cc--HHHHHHHHHHHhcCCCCceEEEEEC-----ChhhhhhhHHHhee-eEEeCCCCHHHHHHHHHH
Confidence 456999999999 43 4566778889999889998888753 34556677888885 999999999998877776
Q ss_pred HHHH
Q 003231 347 KLEE 350 (837)
Q Consensus 347 ~l~~ 350 (837)
.+.+
T Consensus 190 il~~ 193 (546)
T PRK14957 190 ILAK 193 (546)
T ss_pred HHHH
Confidence 5544
No 384
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.28 E-value=0.00093 Score=75.67 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=39.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSML 631 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~ 631 (837)
...++++.||+|||||+++.+++... | -.+++..|... ... ..+. .-....+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~----L~~---~~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN----IST---RQIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH----HHH---HHHh--hhccCCEEEEEcCCCCc
Confidence 45689999999999999999988762 4 22233333221 111 1111 11235899999998864
No 385
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.28 E-value=0.0034 Score=72.89 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 266 TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
...-|++|||+|.+= .+..+.|-+.++..++.+++|.++ ++...+.+.|..|+. .|++..|++++-...++
T Consensus 120 ~~~kvvIIdead~lt---~~~~n~LLk~lEep~~~~~~Il~t-----~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~ 190 (451)
T PRK06305 120 SRYKIYIIDEVHMLT---KEAFNSLLKTLEEPPQHVKFFLAT-----TEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLA 190 (451)
T ss_pred CCCEEEEEecHHhhC---HHHHHHHHHHhhcCCCCceEEEEe-----CChHhcchHHHHhce-EEeCCCCCHHHHHHHHH
Confidence 457899999999942 335566778888888888887763 344678899999996 99999999998888777
Q ss_pred HHH
Q 003231 346 AKL 348 (837)
Q Consensus 346 ~~l 348 (837)
..+
T Consensus 191 ~~~ 193 (451)
T PRK06305 191 LIA 193 (451)
T ss_pred HHH
Confidence 644
No 386
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0037 Score=73.21 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=55.0
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|.+- .++.+.|-..|+..++.+++|.++ ++...+.++|..|++ .|++.+|+.++....++.
T Consensus 119 ~~KVvIIDEad~Lt---~~a~naLLk~LEepp~~~v~Il~t-----t~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~ 189 (486)
T PRK14953 119 KYKVYIIDEAHMLT---KEAFNALLKTLEEPPPRTIFILCT-----TEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKR 189 (486)
T ss_pred CeeEEEEEChhhcC---HHHHHHHHHHHhcCCCCeEEEEEE-----CCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHH
Confidence 35699999999842 344566667788877666655553 345567889999997 899999999999888887
Q ss_pred HHH
Q 003231 347 KLE 349 (837)
Q Consensus 347 ~l~ 349 (837)
++.
T Consensus 190 i~k 192 (486)
T PRK14953 190 ICN 192 (486)
T ss_pred HHH
Confidence 543
No 387
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.28 E-value=0.0015 Score=72.25 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=53.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------cccccHHHHHHHHHHHH
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK----------------WFGEDEKNVRALFTLAA 615 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~----------------~~G~~e~~l~~lf~~A~ 615 (837)
++.+.+-+.++||||+|||+||-.++... |...++++...-... .....+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45666779999999999999999987554 777888877442111 01112223333333345
Q ss_pred hcCCeEEEecccccccCC
Q 003231 616 KVSPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~~ 633 (837)
...+.+|+||-+-.+.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999988763
No 388
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.27 E-value=0.013 Score=71.33 Aligned_cols=93 Identities=16% Similarity=0.222 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHH-HHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc-e
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQSQR-FYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY-N 329 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~-~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~-~ 329 (837)
.++.+|..+.+ .....+||+|||||.+....++ +|+++.-... ..+.|.+||.+.-- .-+..+++++..||.. .
T Consensus 855 vLerLF~~L~k-~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~-s~SKLiLIGISNdl--DLperLdPRLRSRLg~ee 930 (1164)
T PTZ00112 855 ILDRLFNQNKK-DNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK-INSKLVLIAISNTM--DLPERLIPRCRSRLAFGR 930 (1164)
T ss_pred HHHHHHhhhhc-ccccceEEEeehHhhhCccHHHHHHHHHHHhhc-cCCeEEEEEecCch--hcchhhhhhhhhcccccc
Confidence 56677776543 2335679999999997654444 7777764332 34678888874321 1133456777777754 4
Q ss_pred eeeCCCChHHHHHHHHHHH
Q 003231 330 LEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 330 IeI~~P~~e~rl~Ilk~~l 348 (837)
|.+++++.++...||+..+
T Consensus 931 IvF~PYTaEQL~dILk~RA 949 (1164)
T PTZ00112 931 LVFSPYKGDEIEKIIKERL 949 (1164)
T ss_pred ccCCCCCHHHHHHHHHHHH
Confidence 8889999999999999743
No 389
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00024 Score=76.58 Aligned_cols=85 Identities=25% Similarity=0.403 Sum_probs=60.5
Q ss_pred cCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEe
Q 003231 61 LDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLL 140 (837)
Q Consensus 61 v~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~l 140 (837)
-.|.+|.--.|+|=-= -|+.|.+|-=|+|-|-|.-.....-.+..=..--|||-||++.+++.||+.||+-..++|-+-
T Consensus 50 PtP~eik~~Ld~YVIG-Qe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 50 PTPKEIKAHLDEYVIG-QEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred CChHHHHHHhhhheec-chhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 3444444444432110 378999999999999765332212122333444699999999999999999999999999999
Q ss_pred eccccc
Q 003231 141 DVNDFS 146 (837)
Q Consensus 141 d~~~~~ 146 (837)
|.+.++
T Consensus 129 DATtLT 134 (408)
T COG1219 129 DATTLT 134 (408)
T ss_pred cccchh
Confidence 999986
No 390
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.27 E-value=0.00028 Score=70.24 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
++..++|+||||||||++|+.+|..++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999888543
No 391
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.0058 Score=64.62 Aligned_cols=174 Identities=19% Similarity=0.230 Sum_probs=100.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccccc-----cc----ccc--------HHHHHHHHHHHHhc-CC
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAG---ASFINVSMSTITSK-----WF----GED--------EKNVRALFTLAAKV-SP 619 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg---~~~i~v~~s~l~s~-----~~----G~~--------e~~l~~lf~~A~~~-~p 619 (837)
-+.++|+-|+|||.++|++..-++ .-.+.++...+... ++ ... +..-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 578999999999999997766553 22234444332111 11 111 11222333333333 45
Q ss_pred eEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCC-cH---HHHHHHHHhhhcCCCC
Q 003231 620 TIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDL-DE---AIIRRFERRIMVGLPS 695 (837)
Q Consensus 620 sVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~L-d~---aL~rRF~~~I~~~~P~ 695 (837)
.++++||++.+... .-+..+.+.+. -.+. ...-+++.++-..--..+ -+ ++..|++.+|.+++.+
T Consensus 133 v~l~vdEah~L~~~-----~le~Lrll~nl----~~~~--~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDS-----ALEALRLLTNL----EEDS--SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChh-----HHHHHHHHHhh----cccc--cCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 89999999988541 22233222221 1111 111235555543221111 12 3334776668888899
Q ss_pred HHHHHHHHHHHHhhcC----C-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 003231 696 AENREMILKTLLAKEK----V-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 696 ~eer~~IL~~~l~~~~----~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r 746 (837)
.++-...++..+...+ + ++..+..++..+.|| ++-|.++|..|...|...
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYSA 256 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHHc
Confidence 9988888888887643 2 567788889999984 668888888877776653
No 392
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.25 E-value=0.00079 Score=67.53 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=38.4
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS---FINVSMSTI 595 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~---~i~v~~s~l 595 (837)
++|.++..+.+..++.. ... ..++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQS---------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HHc---------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 68888888888887741 111 345789999999999999999998777333 777777655
No 393
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.25 E-value=0.0088 Score=68.99 Aligned_cols=38 Identities=32% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTI 595 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l 595 (837)
++..++|+|++|+|||+++..+|..+ |..+..+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 46789999999999999999999877 566666666543
No 394
>PRK04132 replication factor C small subunit; Provisional
Probab=97.25 E-value=0.0042 Score=76.55 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=60.0
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
.-|++|||+|. |. .++.+.|.+.++..++++.+|.. .|+...+.+.|..|.+ .|.+++|++++-...|+..
T Consensus 631 ~KVvIIDEaD~-Lt--~~AQnALLk~lEep~~~~~FILi-----~N~~~kIi~tIrSRC~-~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 631 FKIIFLDEADA-LT--QDAQQALRRTMEMFSSNVRFILS-----CNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CEEEEEECccc-CC--HHHHHHHHHHhhCCCCCeEEEEE-----eCChhhCchHHhhhce-EEeCCCCCHHHHHHHHHHH
Confidence 36999999999 43 45677788899988889998876 5667788899999986 9999999999888888865
Q ss_pred HH
Q 003231 348 LE 349 (837)
Q Consensus 348 l~ 349 (837)
.+
T Consensus 702 ~~ 703 (846)
T PRK04132 702 AE 703 (846)
T ss_pred HH
Confidence 43
No 395
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.24 E-value=0.0068 Score=67.58 Aligned_cols=75 Identities=23% Similarity=0.306 Sum_probs=51.1
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHh-------------ccCCEEEEecccccCCCCCCchhHHHHccCCceeeeC
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKK-------------LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVK 333 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~-------------l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~ 333 (837)
..=|||||||+. +. .+..+.|-..++. ++.++++|+++--. .....++|..||...|.+.
T Consensus 128 ~~GiL~lDEInr-l~--~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~----e~~l~~aLldRF~~~v~v~ 200 (334)
T PRK13407 128 NRGYLYIDEVNL-LE--DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPE----EGELRPQLLDRFGLSVEVR 200 (334)
T ss_pred CCCeEEecChHh-CC--HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcc----cCCCCHHHHhhcceEEEcC
Confidence 445799999999 32 2333333334432 34456777652221 2348999999999999999
Q ss_pred CCCh-HHHHHHHHHHH
Q 003231 334 LPED-ETHLVNWKAKL 348 (837)
Q Consensus 334 ~P~~-e~rl~Ilk~~l 348 (837)
.|.+ ++|++|++...
T Consensus 201 ~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 201 SPRDVETRVEVIRRRD 216 (334)
T ss_pred CCCcHHHHHHHHHHhh
Confidence 9988 99999999753
No 396
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0028 Score=71.91 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=62.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccccccc----------------cccccHHHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA-------GASFINVSMSTITSK----------------WFGEDEKNVRALFTLAA 615 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el-------g~~~i~v~~s~l~s~----------------~~G~~e~~l~~lf~~A~ 615 (837)
+..++|+||+|+||||++..+|..+ |..+..+++..+... ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4679999999999999999999765 234444444332110 1112223333333332
Q ss_pred hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHH
Q 003231 616 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRF 685 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF 685 (837)
....+|+||.+.+... .... +.++...++... .+...++|+.+|.....+. .+.++|
T Consensus 253 -~~~DlVLIDTaGr~~~------~~~~----l~el~~~l~~~~-~~~e~~LVlsat~~~~~~~-~~~~~~ 309 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK------DFMK----LAEMKELLNACG-RDAEFHLAVSSTTKTSDVK-EIFHQF 309 (388)
T ss_pred -CCCCEEEEcCCCCCcc------CHHH----HHHHHHHHHhcC-CCCeEEEEEcCCCCHHHHH-HHHHHh
Confidence 3468999999987632 1111 223333333221 1224678887777765555 344455
No 397
>PRK09087 hypothetical protein; Validated
Probab=97.24 E-value=0.001 Score=70.15 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=54.4
Q ss_pred EEEEccchhHhhhc-HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHHHHHHHH
Q 003231 270 ILYLRDVDKLLFQS-QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 270 Ilfi~di~~~l~~~-~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~rl~Ilk~ 346 (837)
.|.|||+|.+ ... ..+++++....++ |..++|+|++...+- ....++|..||. ..++|++|+++.|.+|++.
T Consensus 90 ~l~iDDi~~~-~~~~~~lf~l~n~~~~~--g~~ilits~~~p~~~--~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 90 PVLIEDIDAG-GFDETGLFHLINSVRQA--GTSLLMTSRLWPSSW--NVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred eEEEECCCCC-CCCHHHHHHHHHHHHhC--CCeEEEECCCChHHh--ccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 5778999973 333 4488888888886 788888875543221 123567888883 4999999999999999998
Q ss_pred HH
Q 003231 347 KL 348 (837)
Q Consensus 347 ~l 348 (837)
..
T Consensus 165 ~~ 166 (226)
T PRK09087 165 LF 166 (226)
T ss_pred HH
Confidence 54
No 398
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0035 Score=74.70 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=59.0
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
--|++|||+|.+ +..+.|.|-+.|+..++.+++|..| ++...+.+.|..|-. ++++..++.++-.+.++..
T Consensus 119 ~KVvIIDEah~L---t~~A~NALLK~LEEpp~~~~fIL~t-----te~~kll~TI~SRc~-~~~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 119 YRIFIVDEAHMV---TTAGFNALLKIVEEPPEHLIFIFAT-----TEPEKVLPTIRSRTH-HYPFRLLPPRTMRALIARI 189 (584)
T ss_pred ceEEEEECCCcC---CHHHHHHHHHHHhcCCCCeEEEEEe-----CChHhhHHHHHHhce-EEEeeCCCHHHHHHHHHHH
Confidence 348899999994 3457888889999999999988874 334578888888875 9999999999888777765
Q ss_pred HHH
Q 003231 348 LEE 350 (837)
Q Consensus 348 l~~ 350 (837)
+.+
T Consensus 190 ~~~ 192 (584)
T PRK14952 190 CEQ 192 (584)
T ss_pred HHH
Confidence 543
No 399
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.23 E-value=0.00065 Score=79.48 Aligned_cols=171 Identities=26% Similarity=0.326 Sum_probs=98.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccccc-----ccccccHHHHHHHHHHHHh-----cCCeEEEecc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA--GASFINVSMSTITS-----KWFGEDEKNVRALFTLAAK-----VSPTIIFVDE 626 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el--g~~~i~v~~s~l~s-----~~~G~~e~~l~~lf~~A~~-----~~psVLfIDE 626 (837)
.-.+|+.|.|||||-.+|+++.... ..||+.++|..+.. .+||.........+..-++ -..+.+|+||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFlde 415 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDE 415 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHH
Confidence 3569999999999999999997665 57999999987643 3455544332222222111 1237999999
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHhhcccc-c-----cCCceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCC
Q 003231 627 VDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL-T-----RNGERILVLAATNRP-------FDLDEAIIRRFERRIMVGL 693 (837)
Q Consensus 627 ID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~-~-----~~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~ 693 (837)
|..|.- .+...|+..+.... . ...-.|.||+||++. ..+.+.+.-|+ ..+.+..
T Consensus 416 Igd~p~------------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~l 482 (606)
T COG3284 416 IGDMPL------------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITL 482 (606)
T ss_pred hhhchH------------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeecc
Confidence 987731 22233333332211 1 122358899999874 23334444455 3445566
Q ss_pred CCHHHH---HHHHHHHHhhcCC-----ChhhHHH-HHHHcCCCCHHHHHHHHHHHHHHH
Q 003231 694 PSAENR---EMILKTLLAKEKV-----EDLDFKE-LAAMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 694 P~~eer---~~IL~~~l~~~~~-----~d~dl~~-LA~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
|...+| ...|..++.++.. ++..+.. ++...+| +-++|.+++..++..+
T Consensus 483 P~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~ 540 (606)
T COG3284 483 PPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS 540 (606)
T ss_pred CchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC
Confidence 666554 4456666655443 2333332 2333454 4567888877766543
No 400
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.22 E-value=0.0013 Score=71.05 Aligned_cols=93 Identities=23% Similarity=0.282 Sum_probs=61.3
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG---ASFINVS-MSTITS 597 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~-~s~l~s 597 (837)
.++++++-.+...+.+.+++.. +...++|.||+|+|||++++++...+. ..++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 3677777666777777666643 345699999999999999999987763 3344432 222211
Q ss_pred c-----ccc-ccHHHHHHHHHHHHhcCCeEEEecccc
Q 003231 598 K-----WFG-EDEKNVRALFTLAAKVSPTIIFVDEVD 628 (837)
Q Consensus 598 ~-----~~G-~~e~~l~~lf~~A~~~~psVLfIDEID 628 (837)
. .+. .........+..+.+..|.+|+|+|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1 111 111235567777788899999999995
No 401
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.22 E-value=0.0098 Score=65.35 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=50.8
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.+-+|+|||+|.+-. +..+.|...++..+....+|-. .+....+.+++.+|+. .+++++|++++...+++.
T Consensus 102 ~~~vviiDe~~~l~~---~~~~~L~~~le~~~~~~~lIl~-----~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~ 172 (319)
T PRK00440 102 PFKIIFLDEADNLTS---DAQQALRRTMEMYSQNTRFILS-----CNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRY 172 (319)
T ss_pred CceEEEEeCcccCCH---HHHHHHHHHHhcCCCCCeEEEE-----eCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHH
Confidence 456999999998522 2334456667765655554432 2233456678888987 799999999998888887
Q ss_pred HHH
Q 003231 347 KLE 349 (837)
Q Consensus 347 ~l~ 349 (837)
.+.
T Consensus 173 ~~~ 175 (319)
T PRK00440 173 IAE 175 (319)
T ss_pred HHH
Confidence 554
No 402
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.21 E-value=0.0034 Score=58.55 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=32.4
Q ss_pred CCceEeecChhHHHHHHHHHHhhhhCCe---EEEeeccccc
Q 003231 109 SRTILLSGPAELYQQMLAKALAHFFESK---LLLLDVNDFS 146 (837)
Q Consensus 109 ~~~ILL~gP~e~yq~~LakALA~~~~a~---ll~ld~~~~~ 146 (837)
++.|+|.||++.++++|+++||+.+... .+.++.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 5689999999999999999999999997 7777765543
No 403
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.20 E-value=0.0004 Score=80.26 Aligned_cols=153 Identities=25% Similarity=0.319 Sum_probs=85.2
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE---------Eecccc--
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFIN---------VSMSTI-- 595 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~---------v~~s~l-- 595 (837)
|.|++++|..+.-++.....+...- +-.++..-++||+|.|||||+-+.|.+++-....++. +.+.-.
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~~-khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPGG-KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCCC-CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 8999999999887776543222211 1122344579999999999999999999877544432 111111
Q ss_pred --ccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC
Q 003231 596 --TSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR 673 (837)
Q Consensus 596 --~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~ 673 (837)
...|.-+.. .+-.| ..+|.+|||+|+|..+ +...-++++.+.--.+-. -|+...-..+..||+|+|+
T Consensus 530 PvtrEWTLEaG-----ALVLA---DkGvClIDEFDKMndq-DRtSIHEAMEQQSISISK--AGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 530 PVTREWTLEAG-----ALVLA---DKGVCLIDEFDKMNDQ-DRTSIHEAMEQQSISISK--AGIVTSLQARCTVIAAANP 598 (854)
T ss_pred CccceeeeccC-----eEEEc---cCceEEeehhhhhccc-ccchHHHHHHhcchhhhh--hhHHHHHHhhhhhheecCC
Confidence 111211110 01112 2379999999999643 222334444321100000 0111112345788999987
Q ss_pred C-----------C--CCcHHHHHHHHHhhhc
Q 003231 674 P-----------F--DLDEAIIRRFERRIMV 691 (837)
Q Consensus 674 ~-----------~--~Ld~aL~rRF~~~I~~ 691 (837)
. . .|...+++|||....+
T Consensus 599 igGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred CCCccCCccchhhccccccchhhhcceeeee
Confidence 2 1 5667899999754433
No 404
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.19 E-value=0.0049 Score=74.34 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=37.0
Q ss_pred CEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHH
Q 003231 300 SVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 300 ~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
.+++||+||.+ ...++++|..||. .+.+.+.+.++...||+..+.
T Consensus 323 ~~VLI~aTt~~----~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 323 DFVLIGATTRD----PEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred eEEEEEecccc----ccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHH
Confidence 57888887765 3467899999997 889999999999999998654
No 405
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.0033 Score=76.09 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=59.5
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
.-|++|||+|. |. ..+.+.|.+.|+..++.+++|.++ .+...+...|..|.+ +|++.+|+.++-...++..
T Consensus 119 ~KV~IIDEa~~-LT--~~A~NALLKtLEEPP~~tifILaT-----te~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~i 189 (725)
T PRK07133 119 YKIYIIDEVHM-LS--KSAFNALLKTLEEPPKHVIFILAT-----TEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFI 189 (725)
T ss_pred CEEEEEEChhh-CC--HHHHHHHHHHhhcCCCceEEEEEc-----CChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHH
Confidence 35999999998 43 346777888899988898888774 345678889999997 9999999999998888875
Q ss_pred HHH
Q 003231 348 LEE 350 (837)
Q Consensus 348 l~~ 350 (837)
+.+
T Consensus 190 l~k 192 (725)
T PRK07133 190 LEK 192 (725)
T ss_pred HHH
Confidence 543
No 406
>PRK08727 hypothetical protein; Validated
Probab=97.17 E-value=0.0059 Score=64.70 Aligned_cols=77 Identities=9% Similarity=0.102 Sum_probs=48.7
Q ss_pred CcEEEEEccchhHhhhc---HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccC--CceeeeCCCChHHHH
Q 003231 267 SSVILYLRDVDKLLFQS---QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILF--PYNLEVKLPEDETHL 341 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~---~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF--~~~IeI~~P~~e~rl 341 (837)
+.-+|.|||+|.+-... ..+++++....++ .+.|++.+.. .-..-...+++|..|| ...+++++|+++++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~-~~~vI~ts~~---~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~ 168 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAA-GITLLYTARQ---MPDGLALVLPDLRSRLAQCIRIGLPVLDDVARA 168 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHc-CCeEEEECCC---ChhhhhhhhHHHHHHHhcCceEEecCCCHHHHH
Confidence 34589999999843222 2255655555443 1234444431 1122234578898886 347899999999999
Q ss_pred HHHHHH
Q 003231 342 VNWKAK 347 (837)
Q Consensus 342 ~Ilk~~ 347 (837)
.|++..
T Consensus 169 ~iL~~~ 174 (233)
T PRK08727 169 AVLRER 174 (233)
T ss_pred HHHHHH
Confidence 999963
No 407
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.17 E-value=0.00094 Score=76.76 Aligned_cols=171 Identities=23% Similarity=0.332 Sum_probs=97.7
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---------EEecccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFI---------NVSMSTITS 597 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i---------~v~~s~l~s 597 (837)
|.|++.+|+.|.-++.... ...+-.+..++..-+||+.|.|-+.|+-|.|.+.+.....+- -+.+.--..
T Consensus 303 I~GH~~vKkAillLLlGGv-Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD 381 (818)
T KOG0479|consen 303 IYGHDYVKKAILLLLLGGV-EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTD 381 (818)
T ss_pred cccHHHHHHHHHHHHhccc-eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeec
Confidence 9999999999988776532 122223334445567999999999999999999876532221 111110011
Q ss_pred ccccccHHHHHH-HHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhh--ccccccCCceEEEEEecCCC
Q 003231 598 KWFGEDEKNVRA-LFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHW--DGLLTRNGERILVLAATNRP 674 (837)
Q Consensus 598 ~~~G~~e~~l~~-lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~l--d~~~~~~~~~vlVIaTTN~~ 674 (837)
+- ..+..+.+ ..-.| ..+|++|||+|+|..- ...+.-.++.+-...+ -|+...-+.+.-|+|+.|+.
T Consensus 382 ~e--TGERRLEAGAMVLA---DRGVVCIDEFDKMsDi-----DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPv 451 (818)
T KOG0479|consen 382 QE--TGERRLEAGAMVLA---DRGVVCIDEFDKMSDI-----DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPV 451 (818)
T ss_pred cc--cchhhhhcCceEEc---cCceEEehhcccccch-----hHHHHHHHHhcceEEeEeccchhhhccceeeeeecCcc
Confidence 11 11222210 00111 2489999999998431 1222223332221111 24444456788999999984
Q ss_pred C-------------CCcHHHHHHHHHhhhc-CCCCHHHHHHHHHHHHh
Q 003231 675 F-------------DLDEAIIRRFERRIMV-GLPSAENREMILKTLLA 708 (837)
Q Consensus 675 ~-------------~Ld~aL~rRF~~~I~~-~~P~~eer~~IL~~~l~ 708 (837)
+ .|+..+++|||..+.+ +.-+...-..|-.+.++
T Consensus 452 yG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 452 YGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 3 4688999999876543 44555554555444443
No 408
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0026 Score=75.29 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=55.5
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
.-|++|||+|. |. ..+.|.|-+.|+..++.+.+|..|+ +...+...|..|.. .+++..|+.++-...++..
T Consensus 120 ~kVvIIDEad~-ls--~~a~naLLK~LEepp~~~~fIL~t~-----d~~kil~tI~SRc~-~~~f~~l~~~~i~~~L~~i 190 (527)
T PRK14969 120 FKVYIIDEVHM-LS--KSAFNAMLKTLEEPPEHVKFILATT-----DPQKIPVTVLSRCL-QFNLKQMPPPLIVSHLQHI 190 (527)
T ss_pred ceEEEEcCccc-CC--HHHHHHHHHHHhCCCCCEEEEEEeC-----ChhhCchhHHHHHH-HHhcCCCCHHHHHHHHHHH
Confidence 34999999998 43 3466777788999889999888752 33445556777885 9999999999888877765
Q ss_pred HH
Q 003231 348 LE 349 (837)
Q Consensus 348 l~ 349 (837)
+.
T Consensus 191 l~ 192 (527)
T PRK14969 191 LE 192 (527)
T ss_pred HH
Confidence 54
No 409
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0031 Score=72.19 Aligned_cols=87 Identities=8% Similarity=0.043 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhc----CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc
Q 003231 253 LQSLYKVLVSITE----TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 253 ~~~L~~v~~~~~~----~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~ 328 (837)
++.+.+++..++. ..--|++|||+|.+ . ....+.|.+.|+..++..++|..+ ++...+-+.|.+|..
T Consensus 109 id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-~--~~~~~~LLk~LEep~~~t~~Il~t-----~~~~kl~~tl~sR~~- 179 (397)
T PRK14955 109 VDDIRLLRENVRYGPQKGRYRVYIIDEVHML-S--IAAFNAFLKTLEEPPPHAIFIFAT-----TELHKIPATIASRCQ- 179 (397)
T ss_pred HHHHHHHHHHHhhchhcCCeEEEEEeChhhC-C--HHHHHHHHHHHhcCCCCeEEEEEe-----CChHHhHHHHHHHHH-
Confidence 4455555544421 12248999999994 3 234555667788877777766543 234567788888886
Q ss_pred eeeeCCCChHHHHHHHHHHH
Q 003231 329 NLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l 348 (837)
.+++.++++++-.+.++..+
T Consensus 180 ~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 180 RFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HhhcCCCCHHHHHHHHHHHH
Confidence 89999999888777777543
No 410
>PHA02624 large T antigen; Provisional
Probab=97.16 E-value=0.0024 Score=75.17 Aligned_cols=122 Identities=18% Similarity=0.257 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV 637 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~ 637 (837)
..+.++|+||||||||+++++|++.++...+.++++.-.+. |...-....-+.+|||+-.-+......
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~L 497 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDL 497 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccC
Confidence 34579999999999999999999999777777875542211 222222223588899985433211100
Q ss_pred chHHHHHHHHHHHHHhhccccc-c-----CCc----eEEEEEecCCCCCCcHHHHHHHHHhhhcCC
Q 003231 638 GEHEAMRKIKNEFMTHWDGLLT-R-----NGE----RILVLAATNRPFDLDEAIIRRFERRIMVGL 693 (837)
Q Consensus 638 ~~~~~~~~i~~~Ll~~ld~~~~-~-----~~~----~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~ 693 (837)
.....+ .-...|...+||-.. . .+. --..|.|||. ..++..+.-||..++.|..
T Consensus 498 p~G~~~-dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 498 PSGQGM-NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred Cccccc-chhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000000 111344556666511 0 000 0134667776 5678888889988888743
No 411
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.16 E-value=0.00012 Score=73.77 Aligned_cols=23 Identities=48% Similarity=0.819 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el 583 (837)
+++|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 412
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0017 Score=74.19 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=68.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchH
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEH 640 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~ 640 (837)
-++++||.+||||++++.+.....-.++.++..++......- ......+..+.......||||||+.+-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh--------
Confidence 799999999999999998888875557777766654432211 1111222222222457999999997621
Q ss_pred HHHHHHHHHHHHhhccccccCCceEEEEEecCCC--CCCcHHHHHHHHHhhhcCCCCHHHHHH
Q 003231 641 EAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP--FDLDEAIIRRFERRIMVGLPSAENREM 701 (837)
Q Consensus 641 ~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~--~~Ld~aL~rRF~~~I~~~~P~~eer~~ 701 (837)
.. +.+..+ .|.. ..++++.+++... ....+.+..|. ..+.+.+.+..+...
T Consensus 109 -W~-~~lk~l---~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 -WE-RALKYL---YDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred -HH-HHHHHH---Hccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 11 112222 2221 1134444333221 23334455575 566777777777754
No 413
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.14 E-value=0.0024 Score=66.52 Aligned_cols=40 Identities=33% Similarity=0.518 Sum_probs=32.6
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
+++.+...++++||||+|||++|..+|.+. |.+.++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 355667779999999999999999998765 5677777654
No 414
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.0046 Score=73.62 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=58.3
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|.+ +..+.|.|-+.|+..++.+++|.++ ++...+.++|..|+. .+++.+|+.++....++.
T Consensus 119 ~~KVvIIDEa~~L---s~~a~naLLK~LEepp~~~vfI~~t-----te~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~ 189 (563)
T PRK06647 119 RYRVYIIDEVHML---SNSAFNALLKTIEEPPPYIVFIFAT-----TEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKK 189 (563)
T ss_pred CCEEEEEEChhhc---CHHHHHHHHHhhccCCCCEEEEEec-----CChHHhHHHHHHhce-EEEecCCCHHHHHHHHHH
Confidence 4568999999994 3456777888899988899988764 334568889999997 899999999988888876
Q ss_pred HH
Q 003231 347 KL 348 (837)
Q Consensus 347 ~l 348 (837)
..
T Consensus 190 i~ 191 (563)
T PRK06647 190 VC 191 (563)
T ss_pred HH
Confidence 54
No 415
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.12 E-value=0.0025 Score=67.26 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
++.....++++||||+|||+++.+++.+. |.+.++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 55677789999999999999999997653 6777777664
No 416
>PRK09354 recA recombinase A; Provisional
Probab=97.12 E-value=0.0032 Score=70.29 Aligned_cols=78 Identities=24% Similarity=0.262 Sum_probs=52.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------cccccHHHHHHHHHHHH
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK----------------WFGEDEKNVRALFTLAA 615 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~----------------~~G~~e~~l~~lf~~A~ 615 (837)
++...+.++|+||||||||+||-.++... |...++++...-... .....+..+..+-..++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45666779999999999999999887554 777788876542111 01112223333333345
Q ss_pred hcCCeEEEecccccccC
Q 003231 616 KVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~ 632 (837)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999998875
No 417
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.07 E-value=0.022 Score=61.13 Aligned_cols=155 Identities=10% Similarity=0.093 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHh-hcCCcEEEEEccchhHhhhcHHHHHHHHHHHHhc--cC---CEEEEecccccCCCCCCchhHHHHcc
Q 003231 252 FLQSLYKVLVSI-TETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKL--SG---SVLVLGSRMLEPEDDCRDVDERLTIL 325 (837)
Q Consensus 252 ~~~~L~~v~~~~-~~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l--~g---~v~iiGs~~~~~~~~~~~~d~al~rr 325 (837)
++..|...+... .+.++++|+|||+|.+-. +..+.++-+..-. .+ .|+++|...+.+.-. ......+.+|
T Consensus 107 ~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~---~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~-~~~~~~l~~r 182 (269)
T TIGR03015 107 LLRELEDFLIEQFAAGKRALLVVDEAQNLTP---ELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQ-SPQLQQLRQR 182 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcccCCH---HHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHc-CchhHHHHhh
Confidence 445555555433 356789999999998322 2233343222211 11 234555433211101 1224567888
Q ss_pred CCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhh
Q 003231 326 FPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHL 405 (837)
Q Consensus 326 F~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l 405 (837)
+...+++++.+.++....+...+...... ....+. .-.+.-|...+.. .|. .|-.+...+...+.
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~~~g~~--~~~~~~---------~~~~~~i~~~s~G---~p~-~i~~l~~~~~~~a~ 247 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGNR--DAPVFS---------EGAFDAIHRFSRG---IPR-LINILCDRLLLSAF 247 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHHHcCCC--CCCCcC---------HHHHHHHHHHcCC---ccc-HHHHHHHHHHHHHH
Confidence 87899999999999888887654322100 000000 0123334445555 333 36666666666665
Q ss_pred hcCCCccccCCceeecHHhHHHHHHHhh
Q 003231 406 MDNEDPEYRNGKLVISSKSLSHGLSIFQ 433 (837)
Q Consensus 406 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 433 (837)
.++. -.|+.++++.++..++
T Consensus 248 ~~~~--------~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 248 LEEK--------REIGGEEVREVIAEID 267 (269)
T ss_pred HcCC--------CCCCHHHHHHHHHHhh
Confidence 5443 2489999999988554
No 418
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.07 E-value=0.001 Score=64.11 Aligned_cols=33 Identities=48% Similarity=0.822 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
+++.||||+|||++|+.++..++..+ ++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHHHH
Confidence 78999999999999999999999444 4544443
No 419
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0071 Score=68.34 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=51.5
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.+-||+|||+|.+-. ...+.|-..++..+....+|.++ ++...+.+++.+|+. .|++.+|++++...++..
T Consensus 108 ~~kiviIDE~~~l~~---~~~~~ll~~le~~~~~~~~Il~~-----~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 108 KYKIYIIDEVHMLSS---AAFNAFLKTLEEPPAHAIFILAT-----TEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAG 178 (367)
T ss_pred CcEEEEEeChhhcCH---HHHHHHHHHHhCCCCceEEEEEe-----CCcccCCHHHHhcce-eEecCCccHHHHHHHHHH
Confidence 356999999998432 23444555667656665555542 345677889999997 899999999988877776
Q ss_pred HH
Q 003231 347 KL 348 (837)
Q Consensus 347 ~l 348 (837)
.+
T Consensus 179 ~~ 180 (367)
T PRK14970 179 IA 180 (367)
T ss_pred HH
Confidence 43
No 420
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.04 E-value=0.0095 Score=75.02 Aligned_cols=154 Identities=18% Similarity=0.257 Sum_probs=83.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc---c-------c-----cc---------------cHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK---W-------F-----GE---------------DEKNVR 608 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~---~-------~-----G~---------------~e~~l~ 608 (837)
.+-++++||+|.|||+++...+...+ ++.-++...--+. + + +. ....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 45699999999999999999987776 5555544311110 0 0 00 011122
Q ss_pred HHHHHHHh-cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHH
Q 003231 609 ALFTLAAK-VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFER 687 (837)
Q Consensus 609 ~lf~~A~~-~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~ 687 (837)
.++..... ..|.+|+|||++.+-.. .....+..++.. . +.++.+|.++.....+.-.-++.-+.
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~~--------~~~~~l~~l~~~---~----~~~~~lv~~sR~~~~~~~~~l~~~~~ 175 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITNP--------EIHEAMRFFLRH---Q----PENLTLVVLSRNLPPLGIANLRVRDQ 175 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCCh--------HHHHHHHHHHHh---C----CCCeEEEEEeCCCCCCchHhHHhcCc
Confidence 33333332 46889999999987321 122233333322 1 22244444554422232111111112
Q ss_pred hhhcC----CCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCH
Q 003231 688 RIMVG----LPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 688 ~I~~~----~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg 729 (837)
.+.++ ..+.++-..++...+.. .++..++..|.+.|+|+..
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~-~~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSS-PIEAAESSRLCDDVEGWAT 220 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCC-CCCHHHHHHHHHHhCChHH
Confidence 23333 55778888877654432 3477788899999998754
No 421
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.04 E-value=0.0039 Score=65.19 Aligned_cols=41 Identities=32% Similarity=0.433 Sum_probs=32.5
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA---G------ASFINVSMST 594 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el---g------~~~i~v~~s~ 594 (837)
+++.+..-+.|+||||+|||++|..+|... + ..+++++..+
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 355677789999999999999999998764 3 5667777654
No 422
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.04 E-value=0.0011 Score=70.50 Aligned_cols=70 Identities=33% Similarity=0.578 Sum_probs=49.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHH------HhCCcEEEEeccccccc-----cccccHHHHHHHHHHH--------HhcCC
Q 003231 559 CRGILLFGPPGTGKTMLAKAIAN------EAGASFINVSMSTITSK-----WFGEDEKNVRALFTLA--------AKVSP 619 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~------elg~~~i~v~~s~l~s~-----~~G~~e~~l~~lf~~A--------~~~~p 619 (837)
...+||.||+|.||+.||+.|-. ++..+|++++|..+.+. .+|. ++..|.-| +....
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh----vkgaftga~~~r~gllrsadg 283 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH----VKGAFTGARESREGLLRSADG 283 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh----hccccccchhhhhhhhccCCC
Confidence 45699999999999999998853 45789999999988654 2332 22222222 22235
Q ss_pred eEEEecccccccC
Q 003231 620 TIIFVDEVDSMLG 632 (837)
Q Consensus 620 sVLfIDEID~L~~ 632 (837)
++||+|||..|..
T Consensus 284 gmlfldeigelga 296 (531)
T COG4650 284 GMLFLDEIGELGA 296 (531)
T ss_pred ceEehHhhhhcCc
Confidence 8999999998853
No 423
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.03 E-value=0.026 Score=63.15 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=50.9
Q ss_pred CCcEEEEEccchhHhhhcHHHHHHHHHHHHh-------------ccCCEEEEecccccCCCCCCchhHHHHccCCceeee
Q 003231 266 TSSVILYLRDVDKLLFQSQRFYNLLDKLLKK-------------LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEV 332 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~-------------l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI 332 (837)
...=+||||||+. +.. +.-+.|-..++. ++-++.+|+++-.+ .....++|..||..+|.+
T Consensus 130 A~~GvL~lDEi~~-L~~--~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~----eg~l~~~LldRf~l~i~l 202 (337)
T TIGR02030 130 ANRGILYIDEVNL-LED--HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPE----EGELRPQLLDRFGLHAEI 202 (337)
T ss_pred ccCCEEEecChHh-CCH--HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccc----cCCCCHHHHhhcceEEEC
Confidence 3556899999999 432 222222233332 23356677653222 234889999999999999
Q ss_pred CCCCh-HHHHHHHHHHH
Q 003231 333 KLPED-ETHLVNWKAKL 348 (837)
Q Consensus 333 ~~P~~-e~rl~Ilk~~l 348 (837)
..|.+ ++|+.|++...
T Consensus 203 ~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 203 RTVRDVELRVEIVERRT 219 (337)
T ss_pred CCCCCHHHHHHHHHhhh
Confidence 99987 89999998743
No 424
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.03 E-value=0.0016 Score=65.71 Aligned_cols=37 Identities=35% Similarity=0.555 Sum_probs=33.3
Q ss_pred ceEeecChhHHHHHHHHHHhhhhCC----eEEEeeccccch
Q 003231 111 TILLSGPAELYQQMLAKALAHFFES----KLLLLDVNDFSL 147 (837)
Q Consensus 111 ~ILL~gP~e~yq~~LakALA~~~~a----~ll~ld~~~~~~ 147 (837)
-+||.||++++++.|||+||+++.. +|+.+|++.|..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 3788899999999999999999997 999999999863
No 425
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.03 E-value=0.0013 Score=67.90 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=43.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEec-ccccc---------ccccccHHHHHHHHHHHHhcCCeEEEecc
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGA----SFINVSM-STITS---------KWFGEDEKNVRALFTLAAKVSPTIIFVDE 626 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~----~~i~v~~-s~l~s---------~~~G~~e~~l~~lf~~A~~~~psVLfIDE 626 (837)
-+++.||+|+|||+++++++..+.. .++.+.. .++.. ..+|.........+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4899999999999999999888742 2222221 11111 01222223345566667777899999999
Q ss_pred cc
Q 003231 627 VD 628 (837)
Q Consensus 627 ID 628 (837)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 426
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.03 E-value=0.0011 Score=71.45 Aligned_cols=97 Identities=24% Similarity=0.410 Sum_probs=61.4
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-ccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG---ASFINVS-MSTIT 596 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~-~s~l~ 596 (837)
..++++++-.....+.+.+++.... +....+++.||+|+|||++++++...+. ..++.+. ..++.
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v-----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV-----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH-----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred cccHhhccCchhhHHHHHHHHhhcc-----------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 4477777776666666666665421 2357899999999999999999998883 3444433 22221
Q ss_pred cc------cc-cccHHHHHHHHHHHHhcCCeEEEecccc
Q 003231 597 SK------WF-GEDEKNVRALFTLAAKVSPTIIFVDEVD 628 (837)
Q Consensus 597 s~------~~-G~~e~~l~~lf~~A~~~~psVLfIDEID 628 (837)
-. +. .........++..+.+..|.+|+|+|+-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 11 11 1123346677888888899999999995
No 427
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.011 Score=71.00 Aligned_cols=88 Identities=7% Similarity=0.059 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhc----CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc
Q 003231 253 LQSLYKVLVSITE----TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 253 ~~~L~~v~~~~~~----~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~ 328 (837)
++.+.+++..++. ..-=|++|||+|.+ . ....+.|.+.|+..++.+++|..+ ++...+-+.|..|..
T Consensus 109 vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-t--~~a~naLLK~LEePp~~tv~IL~t-----~~~~kLl~TI~SRc~- 179 (620)
T PRK14954 109 VDDIRQLRENVRYGPQKGRYRVYIIDEVHML-S--TAAFNAFLKTLEEPPPHAIFIFAT-----TELHKIPATIASRCQ- 179 (620)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-C--HHHHHHHHHHHhCCCCCeEEEEEe-----CChhhhhHHHHhhce-
Confidence 4445555544421 12348999999994 3 345677888899988887776653 234567788888996
Q ss_pred eeeeCCCChHHHHHHHHHHHH
Q 003231 329 NLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
.|++..|+.++-...++..+.
T Consensus 180 ~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 180 RFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred EEecCCCCHHHHHHHHHHHHH
Confidence 999999999887666665443
No 428
>PRK14974 cell division protein FtsY; Provisional
Probab=97.02 E-value=0.0071 Score=67.48 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=45.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------cc---------cc-cHHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK----------WF---------GE-DEKNVRALFTLA 614 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~----------~~---------G~-~e~~l~~lf~~A 614 (837)
.+.-++|.||||+||||++..+|..+ |..+..+++..+... .. |. ....+....+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35679999999999999999988766 555655554422110 00 10 112223334444
Q ss_pred HhcCCeEEEeccccccc
Q 003231 615 AKVSPTIIFVDEVDSML 631 (837)
Q Consensus 615 ~~~~psVLfIDEID~L~ 631 (837)
......+|+||....+.
T Consensus 219 ~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 219 KARGIDVVLIDTAGRMH 235 (336)
T ss_pred HhCCCCEEEEECCCccC
Confidence 44556799999987663
No 429
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.02 E-value=0.0037 Score=64.54 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=42.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---------------cc----c-ccHHHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK---------------WF----G-EDEKNVRALFTLAA 615 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~---------------~~----G-~~e~~l~~lf~~A~ 615 (837)
|+-++|.||+|+||||.+..+|..+ +..+.-+++..+... ++ . .....+...++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999999998776 444444444322110 01 1 11223444555555
Q ss_pred hcCCeEEEecccccc
Q 003231 616 KVSPTIIFVDEVDSM 630 (837)
Q Consensus 616 ~~~psVLfIDEID~L 630 (837)
.....+||||=..+.
T Consensus 81 ~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS 95 (196)
T ss_dssp HTTSSEEEEEE-SSS
T ss_pred hcCCCEEEEecCCcc
Confidence 555679999987543
No 430
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0043 Score=69.98 Aligned_cols=114 Identities=18% Similarity=0.333 Sum_probs=61.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecccccc----------cccc------ccHHHHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA----G-ASFINVSMSTITS----------KWFG------EDEKNVRALFTLAA 615 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el----g-~~~i~v~~s~l~s----------~~~G------~~e~~l~~lf~~A~ 615 (837)
.....++|.||+|+|||+++..||..+ | ..+..+++..+.. +..| .....+...+. .
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~--~ 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA--E 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--H
Confidence 345679999999999999999999764 3 2444455443310 0001 11111222222 2
Q ss_pred hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHH
Q 003231 616 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRF 685 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF 685 (837)
.....+||||....... . ..+.+.+..+... .....+++|+.+|+....+... ..+|
T Consensus 213 l~~~DlVLIDTaG~~~~-------d----~~l~e~La~L~~~-~~~~~~lLVLsAts~~~~l~ev-i~~f 269 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQR-------D----RTVSDQIAMLHGA-DTPVQRLLLLNATSHGDTLNEV-VQAY 269 (374)
T ss_pred hcCCCEEEEcCCCCCcc-------c----HHHHHHHHHHhcc-CCCCeEEEEecCccChHHHHHH-HHHH
Confidence 23458999999964321 1 1122223333322 1223467888888777666544 3445
No 431
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.01 E-value=0.0088 Score=61.69 Aligned_cols=35 Identities=43% Similarity=0.579 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
.+.+++.||||||||++++.++..+ |..++.+.++
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 3568899999999999999987665 6677776654
No 432
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.00 E-value=0.0043 Score=72.08 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=55.5
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc------ccc--------cHHHHHHHHHHHHh
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW------FGE--------DEKNVRALFTLAAK 616 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~------~G~--------~e~~l~~lf~~A~~ 616 (837)
+++.+..-++|.|+||+|||+|+..+|... +.++++++..+-.... +|. .+..+..+...+.+
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 355677789999999999999999998765 4577788765432210 111 11234556666677
Q ss_pred cCCeEEEecccccccC
Q 003231 617 VSPTIIFVDEVDSMLG 632 (837)
Q Consensus 617 ~~psVLfIDEID~L~~ 632 (837)
..|.+|+||.|..+..
T Consensus 169 ~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 169 ENPQACVIDSIQTLYS 184 (454)
T ss_pred cCCcEEEEecchhhcc
Confidence 7899999999998864
No 433
>PRK13947 shikimate kinase; Provisional
Probab=96.99 E-value=0.00067 Score=67.78 Aligned_cols=31 Identities=39% Similarity=0.583 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
+|+|.|+||||||++++.+|+.+|++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997655
No 434
>PRK04296 thymidine kinase; Provisional
Probab=96.99 E-value=0.0037 Score=64.09 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=41.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc----ccc---ccccccc-----HHHHHHHHHHH--HhcCCeEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA---GASFINVSMS----TIT---SKWFGED-----EKNVRALFTLA--AKVSPTIIF 623 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s----~l~---s~~~G~~-----e~~l~~lf~~A--~~~~psVLf 623 (837)
-.+++||+|+|||+++..++..+ +..++.+... ... ....|.. ......++..+ ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999999988776 5565555431 100 0111110 01122333333 234568999
Q ss_pred ecccccc
Q 003231 624 VDEVDSM 630 (837)
Q Consensus 624 IDEID~L 630 (837)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999755
No 435
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.012 Score=70.70 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=56.7
Q ss_pred EEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHH
Q 003231 269 VILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
=|++|||+|.+ +....|.|.+.|+..++.+.+|-.+ ++...+...|..|.. .|++..|+.++-...++..+
T Consensus 134 KVvIIDEad~L---s~~a~naLLKtLEePp~~~~fIl~t-----te~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 134 KVYIIDEVHML---STAAFNALLKTLEEPPPHVKFIFAT-----TEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIA 204 (598)
T ss_pred EEEEEEChHhC---CHHHHHHHHHHHHhCCCCeEEEEEe-----CChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHH
Confidence 48999999994 3456788888899988888877653 333446677888996 99999999999988888766
Q ss_pred H
Q 003231 349 E 349 (837)
Q Consensus 349 ~ 349 (837)
.
T Consensus 205 ~ 205 (598)
T PRK09111 205 A 205 (598)
T ss_pred H
Confidence 4
No 436
>PRK03839 putative kinase; Provisional
Probab=96.97 E-value=0.00064 Score=68.75 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
.|+|.|+||+||||+++.+|+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999997654
No 437
>PHA02774 E1; Provisional
Probab=96.94 E-value=0.0035 Score=73.48 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFIN-VSM 592 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~-v~~ 592 (837)
.+.++|+||||||||++|.+|++.++..++. ++.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3579999999999999999999999655543 553
No 438
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.93 E-value=0.00077 Score=69.24 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=54.9
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEeccccccccc----cccHH-------------HHHHHHHHHHhcCCe
Q 003231 562 ILLFGPPGTGKTMLAKAI-ANEA---GASFINVSMSTITSKWF----GEDEK-------------NVRALFTLAAKVSPT 620 (837)
Q Consensus 562 iLL~GPpGtGKT~LAral-A~el---g~~~i~v~~s~l~s~~~----G~~e~-------------~l~~lf~~A~~~~ps 620 (837)
.+++|.||+|||..|-.. .... |.+++. +...|.-..+ +.... .......-......+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999988666 4333 666554 4332221111 11000 000111111111468
Q ss_pred EEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhc
Q 003231 621 IIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMV 691 (837)
Q Consensus 621 VLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~ 691 (837)
+|+|||+..+++.+..... ...... ..+.. ....++-|+.+|-.+..+++.+++..+..+.+
T Consensus 82 liviDEa~~~~~~r~~~~~--~~~~~~----~~l~~---hRh~g~diiliTQ~~~~id~~ir~lve~~~~~ 143 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK--KVPEII----EFLAQ---HRHYGWDIILITQSPSQIDKFIRDLVEYHYHC 143 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH----HGGGG---CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEE
T ss_pred EEEEECChhhcCCCccccc--cchHHH----HHHHH---hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEE
Confidence 9999999999987755210 011222 22222 23345788889999999999998755444443
No 439
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.0073 Score=61.87 Aligned_cols=24 Identities=50% Similarity=0.696 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg 584 (837)
=++|+|+||+|||++|+.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999993
No 440
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.93 E-value=0.0079 Score=63.81 Aligned_cols=41 Identities=29% Similarity=0.459 Sum_probs=31.5
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMST 594 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~ 594 (837)
+|+.+...+|++||||+|||++|..++.+. |-+.++++..+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 456778889999999999999999876542 66676666543
No 441
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.93 E-value=0.0042 Score=65.37 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA---------GASFINVSMST 594 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el---------g~~~i~v~~s~ 594 (837)
+++.+..-+.|+||||+|||++|..+|... +...++++..+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 355667779999999999999999998553 25677777654
No 442
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.91 E-value=0.0045 Score=64.91 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=51.5
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc----------------------c-------c
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMSTITSK----------------------W-------F 600 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s~l~s~----------------------~-------~ 600 (837)
+|+.+...+|+.||||+|||+++..++... |-+.+.++..+-... + .
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 456677889999999999999999876443 788888776432111 0 0
Q ss_pred ----cccHHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 601 ----GEDEKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 601 ----G~~e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
......+..+...+....+.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 112233445555556677899999999998
No 443
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.03 Score=66.13 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=57.4
Q ss_pred EEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHH
Q 003231 269 VILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
-|++|||+|.+ +.++.+.|.+.|+..+..+.+|-++ ++...+.+.|..|.. ++++.+++.++-...++..+
T Consensus 119 KVvIIDEad~L---t~~A~NALLK~LEEpp~~t~FIL~t-----td~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il 189 (535)
T PRK08451 119 KIFIIDEVHML---TKEAFNALLKTLEEPPSYVKFILAT-----TDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTIL 189 (535)
T ss_pred EEEEEECcccC---CHHHHHHHHHHHhhcCCceEEEEEE-----CChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHH
Confidence 48999999994 3567778888999988888877663 335678889999986 99999999988888877655
Q ss_pred H
Q 003231 349 E 349 (837)
Q Consensus 349 ~ 349 (837)
.
T Consensus 190 ~ 190 (535)
T PRK08451 190 E 190 (535)
T ss_pred H
Confidence 4
No 444
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.90 E-value=0.00085 Score=65.50 Aligned_cols=31 Identities=32% Similarity=0.655 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
+|+|+||||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988554
No 445
>PRK00625 shikimate kinase; Provisional
Probab=96.90 E-value=0.00087 Score=67.79 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
.|+|+|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 446
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.88 E-value=0.002 Score=69.79 Aligned_cols=69 Identities=28% Similarity=0.366 Sum_probs=43.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-ccccccc-------cccc------cHHHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGA----------SFINVS-MSTITSK-------WFGE------DEKNVRALFTLAA 615 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~----------~~i~v~-~s~l~s~-------~~G~------~e~~l~~lf~~A~ 615 (837)
.+++|.||+|+|||++.+.++..+.. .+..++ ..++... .+|. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999988732 222221 1122111 0111 1112334666777
Q ss_pred hcCCeEEEecccc
Q 003231 616 KVSPTIIFVDEVD 628 (837)
Q Consensus 616 ~~~psVLfIDEID 628 (837)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 447
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.87 E-value=0.0016 Score=73.06 Aligned_cols=71 Identities=21% Similarity=0.356 Sum_probs=46.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEe-ccccc---------cccccccHHHHHHHHHHHHhcCCeEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG----ASFINVS-MSTIT---------SKWFGEDEKNVRALFTLAAKVSPTIIF 623 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg----~~~i~v~-~s~l~---------s~~~G~~e~~l~~lf~~A~~~~psVLf 623 (837)
+...+++.||+|+||||+++++...+. ..++.+. ..++. ...+|.........+..+.+..|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 446799999999999999999998764 2333322 11111 111232223355666777788999999
Q ss_pred ecccc
Q 003231 624 VDEVD 628 (837)
Q Consensus 624 IDEID 628 (837)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99994
No 448
>PHA02244 ATPase-like protein
Probab=96.87 E-value=0.016 Score=65.10 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=32.4
Q ss_pred CCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEee
Q 003231 106 SPASRTILLSGPAELYQQMLAKALAHFFESKLLLLD 141 (837)
Q Consensus 106 ~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld 141 (837)
...+..|||.||+++++++||+|||+..+.+|+.++
T Consensus 116 l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345667999999999999999999999999998876
No 449
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.016 Score=65.44 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----c-----
Q 003231 531 NEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITS----K----- 598 (837)
Q Consensus 531 d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s----~----- 598 (837)
..+++.+.+.+...+..+..+. ..++.++|.||+|+||||++..||..+ |..+..+++..... .
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~~----~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVFE----KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhccccccc----cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 3455555555443232222111 234679999999999999999999877 44555555533210 0
Q ss_pred -------cccccHHHHHHHHHHHHh-cCCeEEEecccccc
Q 003231 599 -------WFGEDEKNVRALFTLAAK-VSPTIIFVDEVDSM 630 (837)
Q Consensus 599 -------~~G~~e~~l~~lf~~A~~-~~psVLfIDEID~L 630 (837)
........+...+..+.. ....+||||-..+.
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 112234445455544443 24679999987654
No 450
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.0027 Score=65.87 Aligned_cols=72 Identities=28% Similarity=0.387 Sum_probs=47.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEec-cccccccccc-------------cHHHHHHHHHHHHh
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA--G------ASFINVSM-STITSKWFGE-------------DEKNVRALFTLAAK 616 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el--g------~~~i~v~~-s~l~s~~~G~-------------~e~~l~~lf~~A~~ 616 (837)
..+.|+.||||||||++.|-+|+-+ | ..+..++- +++..-..|. ..-+-..+....+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 3568999999999999999999877 2 23344443 2332211111 12223345666788
Q ss_pred cCCeEEEecccccc
Q 003231 617 VSPTIIFVDEVDSM 630 (837)
Q Consensus 617 ~~psVLfIDEID~L 630 (837)
+.|.||++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 89999999999754
No 451
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.84 E-value=0.016 Score=67.23 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=25.7
Q ss_pred CCCCceEeecChhHHHHHHHHHHhhhhCC
Q 003231 107 PASRTILLSGPAELYQQMLAKALAHFFES 135 (837)
Q Consensus 107 ~~~~~ILL~gP~e~yq~~LakALA~~~~a 135 (837)
-+..-|||.|||+.++++||||||+.++.
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 35677999999999999999999998864
No 452
>PRK13695 putative NTPase; Provisional
Probab=96.82 E-value=0.0051 Score=61.90 Aligned_cols=23 Identities=48% Similarity=0.639 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el 583 (837)
.++|.|++|+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988765
No 453
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.81 E-value=0.035 Score=67.37 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=48.4
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHh-------------ccCCEEEEecccccCCCCCCchhHHHHccCCceeeeC
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKK-------------LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVK 333 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~-------------l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~ 333 (837)
..=|||||||+. +.. +.-+.|-..++. ++-++.+|++.-. ......++|..||..+|++.
T Consensus 126 ~~GiL~lDEi~~-l~~--~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np----~eg~l~~~L~dR~~l~i~v~ 198 (633)
T TIGR02442 126 HRGILYIDEVNL-LDD--HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP----EEGDLRPQLLDRFGLCVDVA 198 (633)
T ss_pred CCCeEEeChhhh-CCH--HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC----CCCCCCHHHHhhcceEEEcc
Confidence 335999999999 432 223333334442 1234778875221 12357899999999899998
Q ss_pred CCC-hHHHHHHHHHHH
Q 003231 334 LPE-DETHLVNWKAKL 348 (837)
Q Consensus 334 ~P~-~e~rl~Ilk~~l 348 (837)
.|. .+++..+++..+
T Consensus 199 ~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 199 APRDPEERVEIIRRRL 214 (633)
T ss_pred CCCchHHHHHHHHHHH
Confidence 876 477888887544
No 454
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.80 E-value=0.0095 Score=60.09 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=45.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc-----------------cccHHHHHHHHHHHHhcCCeEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWF-----------------GEDEKNVRALFTLAAKVSPTIIF 623 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~-----------------G~~e~~l~~lf~~A~~~~psVLf 623 (837)
.+|+.||||+|||++|..++..++.+++++........-. -+....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4899999999999999999999887777766543221100 00001233333221 23457899
Q ss_pred ecccccccC
Q 003231 624 VDEVDSMLG 632 (837)
Q Consensus 624 IDEID~L~~ 632 (837)
||-+..+..
T Consensus 82 ID~Lt~~~~ 90 (170)
T PRK05800 82 VDCLTTWVT 90 (170)
T ss_pred ehhHHHHHH
Confidence 999988853
No 455
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.79 E-value=0.0065 Score=64.85 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=62.8
Q ss_pred HHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHh
Q 003231 51 QIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALA 130 (837)
Q Consensus 51 ~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA 130 (837)
.++..+.+.-+++..-+-|||+|-.. ++..+.++..|.- |..+.....+.++|+||++.+++.|+.|+|
T Consensus 52 ~~~~~~~~s~i~~~~~~~tFdnf~~~-~~~q~~al~~a~~----------~~~~~~~~~~~~~l~G~~GtGKThLa~aia 120 (244)
T PRK07952 52 KMQRTFNRSGIRPLHQNCSFENYRVE-CEGQMNALSKARQ----------YVEEFDGNIASFIFSGKPGTGKNHLAAAIC 120 (244)
T ss_pred HHHHHHHHcCCCccccCCccccccCC-CchHHHHHHHHHH----------HHHhhccCCceEEEECCCCCCHHHHHHHHH
Confidence 34445677788888889999999764 3444444443332 122222234689999999999999999999
Q ss_pred hhh---CCeEEEeeccccchhh
Q 003231 131 HFF---ESKLLLLDVNDFSLKM 149 (837)
Q Consensus 131 ~~~---~a~ll~ld~~~~~~~~ 149 (837)
+++ |.+.+.+++.+|...+
T Consensus 121 ~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 121 NELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred HHHHhcCCeEEEEEHHHHHHHH
Confidence 998 7788888888876544
No 456
>PRK14532 adenylate kinase; Provisional
Probab=96.79 E-value=0.0011 Score=67.34 Aligned_cols=36 Identities=33% Similarity=0.611 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.++|.||||+||||+|+.||+.+|+.++ ++.++..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45454443
No 457
>PRK10536 hypothetical protein; Provisional
Probab=96.79 E-value=0.013 Score=62.65 Aligned_cols=54 Identities=30% Similarity=0.244 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMST 594 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s~ 594 (837)
.|-+.......+..++.. ..-+++.||+|||||+||.++|.+. .+..+.+..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~---------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 56 PILARNEAQAHYLKAIES---------------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred cccCCCHHHHHHHHHHhc---------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 356666655555554422 2368999999999999999999852 24444444433
No 458
>PF13173 AAA_14: AAA domain
Probab=96.79 E-value=0.0041 Score=59.37 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=47.4
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhc-cCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKL-SGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDET 339 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l-~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~ 339 (837)
++.+||||||+.. .++...+|...++. ...|++.||...... .+..+.|..|.- .+++.|.+-++
T Consensus 61 ~~~~i~iDEiq~~----~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~---~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 61 GKKYIFIDEIQYL----PDWEDALKFLVDNGPNIKIILTGSSSSLLS---KDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred CCcEEEEehhhhh----ccHHHHHHHHHHhccCceEEEEccchHHHh---hcccccCCCeEE-EEEECCCCHHH
Confidence 7899999999993 56777788888875 358888898555432 245677777875 88888876543
No 459
>PRK06762 hypothetical protein; Provisional
Probab=96.77 E-value=0.0032 Score=62.67 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
.-++|+|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4588999999999999999999997666666665443
No 460
>PRK13949 shikimate kinase; Provisional
Probab=96.77 E-value=0.0012 Score=66.54 Aligned_cols=32 Identities=50% Similarity=0.725 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
+.|+|+||||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988766
No 461
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.75 E-value=0.013 Score=59.04 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=45.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc----------------c-ccccHHHHHHHHHHHHhcCCeEEEe
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK----------------W-FGEDEKNVRALFTLAAKVSPTIIFV 624 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~----------------~-~G~~e~~l~~lf~~A~~~~psVLfI 624 (837)
+|+.||+|+|||++|..++...+.+.+++....-... | ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999888778877765432211 0 1112223333332211 4679999
Q ss_pred cccccccC
Q 003231 625 DEVDSMLG 632 (837)
Q Consensus 625 DEID~L~~ 632 (837)
|-+..+..
T Consensus 80 Dclt~~~~ 87 (169)
T cd00544 80 DCLTLWVT 87 (169)
T ss_pred EcHhHHHH
Confidence 99887754
No 462
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.021 Score=68.71 Aligned_cols=74 Identities=9% Similarity=0.086 Sum_probs=53.4
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|. |. .+..+.|.+.|+..+...++|..+ ++...+.+.|..|.. .+++..++.++-..+++.
T Consensus 120 ~~kVvIIDEa~~-L~--~~a~naLLk~LEepp~~tv~Il~t-----~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~ 190 (585)
T PRK14950 120 RYKVYIIDEVHM-LS--TAAFNALLKTLEEPPPHAIFILAT-----TEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRK 190 (585)
T ss_pred CeEEEEEeChHh-CC--HHHHHHHHHHHhcCCCCeEEEEEe-----CChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHH
Confidence 345899999998 43 345666777788877776655442 334557778888886 899999999988887776
Q ss_pred HHH
Q 003231 347 KLE 349 (837)
Q Consensus 347 ~l~ 349 (837)
...
T Consensus 191 ~a~ 193 (585)
T PRK14950 191 IAA 193 (585)
T ss_pred HHH
Confidence 543
No 463
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.74 E-value=0.0013 Score=66.54 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS 597 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s 597 (837)
++++||||+|||++|+.+|..+|+.. ++++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998644 55655543
No 464
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.72 E-value=0.039 Score=61.90 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=50.7
Q ss_pred CCcEEEEEccchhHhhhc-HH-HHHHHHHH---H------HhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCC
Q 003231 266 TSSVILYLRDVDKLLFQS-QR-FYNLLDKL---L------KKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKL 334 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~-~~-~~~~lk~~---l------~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~ 334 (837)
...=|||||||+. +... +. +.+.++.- + .+++-++++|++.-.+ .....++|..||..+|.+.-
T Consensus 143 A~~GiL~lDEInr-L~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~----eg~l~~~LldRf~l~i~l~~ 217 (350)
T CHL00081 143 ANRGILYVDEVNL-LDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPE----EGELRPQLLDRFGMHAEIRT 217 (350)
T ss_pred cCCCEEEecChHh-CCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc----cCCCCHHHHHHhCceeecCC
Confidence 3567899999999 4322 21 22222110 0 1134466777643222 23489999999999999999
Q ss_pred CCh-HHHHHHHHHHH
Q 003231 335 PED-ETHLVNWKAKL 348 (837)
Q Consensus 335 P~~-e~rl~Ilk~~l 348 (837)
|.+ +.+++|++..+
T Consensus 218 ~~~~~~e~~il~~~~ 232 (350)
T CHL00081 218 VKDPELRVKIVEQRT 232 (350)
T ss_pred CCChHHHHHHHHhhh
Confidence 985 99999999753
No 465
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0013 Score=63.96 Aligned_cols=33 Identities=42% Similarity=0.756 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
..+||++|-||||||+++.++|...|++++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 457999999999999999999999999988664
No 466
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.72 E-value=0.0058 Score=71.63 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=62.0
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-cccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG---ASFINVSM-STIT 596 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~~-s~l~ 596 (837)
..++++++-.++..+.+..++.. +..-++++||+|+|||++.+++...+. .+++.+.- -++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 44788888778888888877743 334589999999999999998877763 33444321 1121
Q ss_pred ccc-----ccc-cHHHHHHHHHHHHhcCCeEEEecccc
Q 003231 597 SKW-----FGE-DEKNVRALFTLAAKVSPTIIFVDEVD 628 (837)
Q Consensus 597 s~~-----~G~-~e~~l~~lf~~A~~~~psVLfIDEID 628 (837)
-.. +.. ........+..+.++.|.||+|.|+-
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 111 111 11224456667778899999999995
No 467
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.71 E-value=0.013 Score=60.63 Aligned_cols=72 Identities=22% Similarity=0.395 Sum_probs=43.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-----CCcEE-------------EEeccccccc---cccccHHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA-----GASFI-------------NVSMSTITSK---WFGEDEKNVRALFTLAAK 616 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i-------------~v~~s~l~s~---~~G~~e~~l~~lf~~A~~ 616 (837)
...-++|.||+|+|||++++.++... |.++- .++..+-... .+......+..+++.+..
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~ 103 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK 103 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccC
Confidence 34678999999999999999998533 44321 1111110000 011112345566666554
Q ss_pred cCCeEEEeccccc
Q 003231 617 VSPTIIFVDEVDS 629 (837)
Q Consensus 617 ~~psVLfIDEID~ 629 (837)
..|.+|++||.-.
T Consensus 104 ~~p~llllDEp~~ 116 (199)
T cd03283 104 GEPVLFLLDEIFK 116 (199)
T ss_pred CCCeEEEEecccC
Confidence 5789999999854
No 468
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.71 E-value=0.072 Score=58.78 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC------cEEEEec
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGA------SFINVSM 592 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~------~~i~v~~ 592 (837)
.++..|.|+|+=|+|||++.+.+-..+.- .++.+++
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~ 59 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNA 59 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcc
Confidence 45678999999999999999999888743 3555665
No 469
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.69 E-value=0.021 Score=62.26 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcCCcEEEEEccchhHhhhc----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCce
Q 003231 254 QSLYKVLVSITETSSVILYLRDVDKLLFQS----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYN 329 (837)
Q Consensus 254 ~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~ 329 (837)
+....++..+ ++=+|-|||+|.+|.|+ .+++|.||-+-+.+.=+|+++| |.+.++ ..--|..|.+||. .
T Consensus 135 ~~~~~llr~~---~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG--t~~A~~-al~~D~QLa~RF~-~ 207 (302)
T PF05621_consen 135 QQVLRLLRRL---GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG--TREAYR-ALRTDPQLASRFE-P 207 (302)
T ss_pred HHHHHHHHHc---CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec--cHHHHH-HhccCHHHHhccC-C
Confidence 3344677776 99999999999999887 3499999999888877888888 444333 5667999999997 7
Q ss_pred eeeCCCC-hHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhh----cccCCCCCChhhHHHHHHHHHHhh
Q 003231 330 LEVKLPE-DETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGS----ICQADTMVLSNYIEEIVVSAISHH 404 (837)
Q Consensus 330 IeI~~P~-~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~----~~~~d~~l~~~~Ie~iv~~a~~~~ 404 (837)
+.++.=+ +++-.+.+.. ++...-.....++.-.+|.. ++-. ++ .+|-.|+..|+-.+
T Consensus 208 ~~Lp~W~~d~ef~~LL~s--------------~e~~LPLr~~S~l~~~~la~~i~~~s~G---~i-G~l~~ll~~aA~~A 269 (302)
T PF05621_consen 208 FELPRWELDEEFRRLLAS--------------FERALPLRKPSNLASPELARRIHERSEG---LI-GELSRLLNAAAIAA 269 (302)
T ss_pred ccCCCCCCCcHHHHHHHH--------------HHHhCCCCCCCCCCCHHHHHHHHHHcCC---ch-HHHHHHHHHHHHHH
Confidence 7665322 2222233222 22222222333355555544 3333 33 35666778888888
Q ss_pred hhcCCCccccCCceeecHHhHHH
Q 003231 405 LMDNEDPEYRNGKLVISSKSLSH 427 (837)
Q Consensus 405 l~~~~~~~~~~~~~~i~~~~~~~ 427 (837)
+.... =.|+.+.|+.
T Consensus 270 I~sG~--------E~It~~~l~~ 284 (302)
T PF05621_consen 270 IRSGE--------ERITREILDK 284 (302)
T ss_pred HhcCC--------ceecHHHHhh
Confidence 76554 2366665544
No 470
>PRK10436 hypothetical protein; Provisional
Probab=96.69 E-value=0.0061 Score=70.82 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=62.9
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-ccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG---ASFINVS-MSTIT 596 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~-~s~l~ 596 (837)
..++++++-.+...+.+.+++.. +..-+|++||+|+||||+..++..+++ .+++.+. +-++.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 34788888777788888877743 456799999999999999988777763 3333332 11211
Q ss_pred cc-----cccc-cHHHHHHHHHHHHhcCCeEEEecccc
Q 003231 597 SK-----WFGE-DEKNVRALFTLAAKVSPTIIFVDEVD 628 (837)
Q Consensus 597 s~-----~~G~-~e~~l~~lf~~A~~~~psVLfIDEID 628 (837)
-. .++. ........+..+.++.|.||+|.||-
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 11 1111 11235566777788899999999994
No 471
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.69 E-value=0.0033 Score=70.80 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.-.+|+||||+|||+|++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3589999999999999999998773
No 472
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.69 E-value=0.004 Score=69.50 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=48.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEE-ecccccc-----------cc--ccccHHHHHHHHHHHHhcCCeE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGA--SFINV-SMSTITS-----------KW--FGEDEKNVRALFTLAAKVSPTI 621 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~--~~i~v-~~s~l~s-----------~~--~G~~e~~l~~lf~~A~~~~psV 621 (837)
...+++++||+|+|||+++++++..... .++.+ +..++.- .. .|...-....++..+.+..|.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 3578999999999999999999988742 33322 1112210 00 1112224567888888999999
Q ss_pred EEecccc
Q 003231 622 IFVDEVD 628 (837)
Q Consensus 622 LfIDEID 628 (837)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999995
No 473
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.68 E-value=0.0053 Score=67.56 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=47.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEec-cccc-------cccccccHHHHHHHHHHHHhcCCeEEEec
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAG-----ASFINVSM-STIT-------SKWFGEDEKNVRALFTLAAKVSPTIIFVD 625 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg-----~~~i~v~~-s~l~-------s~~~G~~e~~l~~lf~~A~~~~psVLfID 625 (837)
..++++.||+|+|||+++++++..+. ..++.+.- .++. .-..+........++..+.+..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999998862 33333321 1111 00111112256778888889999999999
Q ss_pred ccc
Q 003231 626 EVD 628 (837)
Q Consensus 626 EID 628 (837)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 994
No 474
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0014 Score=65.85 Aligned_cols=32 Identities=31% Similarity=0.566 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
.+++|.|++|+||||+.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998665
No 475
>PRK13948 shikimate kinase; Provisional
Probab=96.67 E-value=0.0019 Score=65.88 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=32.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
+++..|+|.|++|+|||++++.+|..+|.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 46788999999999999999999999999998665
No 476
>PRK06217 hypothetical protein; Validated
Probab=96.67 E-value=0.0016 Score=66.25 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
.|+|.|+||+||||+|++|++.++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999887655
No 477
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.66 E-value=0.016 Score=62.35 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=31.4
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
+|+.+...++++||||||||++|..+|... |-+.++++..
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 466677789999999999999999987643 5666666654
No 478
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.65 E-value=0.0016 Score=62.82 Aligned_cols=30 Identities=33% Similarity=0.699 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
+++.|+||||||++|+.+|..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998766
No 479
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.64 E-value=0.0058 Score=70.39 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=66.1
Q ss_pred CCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eeccc
Q 003231 516 PANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFIN-VSMST 594 (837)
Q Consensus 516 ~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~-v~~s~ 594 (837)
+......+|++++......+.+..++.. |..-+|+.||+|+|||+...++.++++.+... ++..+
T Consensus 229 ~~~~~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiED 294 (500)
T COG2804 229 DKDQVILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIED 294 (500)
T ss_pred ccccccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeC
Confidence 3334456788998888888888887754 45568899999999999999999998654432 22222
Q ss_pred ---ccccccccc------HHHHHHHHHHHHhcCCeEEEecccc
Q 003231 595 ---ITSKWFGED------EKNVRALFTLAAKVSPTIIFVDEVD 628 (837)
Q Consensus 595 ---l~s~~~G~~------e~~l~~lf~~A~~~~psVLfIDEID 628 (837)
+.-.-+.+. .-.....++...++.|.||+|.||.
T Consensus 295 PVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 295 PVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred CeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 111111110 0112345566678899999999995
No 480
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.64 E-value=0.019 Score=60.74 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s 593 (837)
|+.+..-++|.|+||+|||+++..+|... |.+++.+++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 45677789999999999999999887654 7788777754
No 481
>PF13479 AAA_24: AAA domain
Probab=96.64 E-value=0.0091 Score=62.35 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=39.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEeccccc-cc------cccccHHHHHHHHHHH--HhcCCeEEEecccc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGAS-FINVSMSTIT-SK------WFGEDEKNVRALFTLA--AKVSPTIIFVDEVD 628 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~-~i~v~~s~l~-s~------~~G~~e~~l~~lf~~A--~~~~psVLfIDEID 628 (837)
+..++||||||+|||++|..+ +-+ |+.+...... .. +.-.+-..+.+.+..+ ......+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 456999999999999999988 222 2233333110 00 0011223344444332 23467899999887
Q ss_pred cc
Q 003231 629 SM 630 (837)
Q Consensus 629 ~L 630 (837)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
No 482
>PRK14531 adenylate kinase; Provisional
Probab=96.63 E-value=0.0019 Score=65.71 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
..++++||||+|||++++.+|..+|++++. +.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999987754 44443
No 483
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0085 Score=71.17 Aligned_cols=111 Identities=22% Similarity=0.280 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhhcH--H-H---HHHHHHHHHh------------ccCCEEEEecccccCCC
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQSQ--R-F---YNLLDKLLKK------------LSGSVLVLGSRMLEPED 313 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~--~-~---~~~lk~~l~~------------l~g~v~iiGs~~~~~~~ 313 (837)
+||.|.++=.. +|+|| +||||+ +..+. | + ...|+|.-++ || +|+.|.. .|
T Consensus 407 IiQ~mkka~~~----NPv~L-LDEIDK-m~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS-~VmFiaT-----AN 474 (782)
T COG0466 407 IIQGMKKAGVK----NPVFL-LDEIDK-MGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS-KVMFIAT-----AN 474 (782)
T ss_pred HHHHHHHhCCc----CCeEE-eechhh-ccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh-heEEEee-----cC
Confidence 66777665444 78765 899999 54431 1 2 2222222211 22 5665542 45
Q ss_pred CCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhH
Q 003231 314 DCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYI 393 (837)
Q Consensus 314 ~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~I 393 (837)
....++..|.-||+ .|++.==.+++-+.|=|.|| +...+..||+.-.+|. +++.+|
T Consensus 475 sl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~L---------------iPk~~~~~gL~~~el~--------i~d~ai 530 (782)
T COG0466 475 SLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHL---------------IPKQLKEHGLKKGELT--------ITDEAI 530 (782)
T ss_pred ccccCChHHhccee-eeeecCCChHHHHHHHHHhc---------------chHHHHHcCCCcccee--------ecHHHH
Confidence 55669999999999 99999999999999999876 3345556666555433 889999
Q ss_pred HHHHH
Q 003231 394 EEIVV 398 (837)
Q Consensus 394 e~iv~ 398 (837)
..|++
T Consensus 531 ~~iI~ 535 (782)
T COG0466 531 KDIIR 535 (782)
T ss_pred HHHHH
Confidence 88874
No 484
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.025 Score=68.19 Aligned_cols=87 Identities=9% Similarity=0.104 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhcCCcE-----EEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC
Q 003231 253 LQSLYKVLVSITETSSV-----ILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP 327 (837)
Q Consensus 253 ~~~L~~v~~~~~~~~p~-----Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~ 327 (837)
++.+..++..+ ...|. |++|||+|.+ +..+.+.|.+.|+..++..++|.+++ +...+-+.|..|..
T Consensus 103 vd~Ir~li~~~-~~~P~~~~~KVvIIdea~~L---s~~a~naLLK~LEepp~~tifIL~tt-----~~~kIl~tI~SRc~ 173 (614)
T PRK14971 103 VDDIRNLIEQV-RIPPQIGKYKIYIIDEVHML---SQAAFNAFLKTLEEPPSYAIFILATT-----EKHKILPTILSRCQ 173 (614)
T ss_pred HHHHHHHHHHH-hhCcccCCcEEEEEECcccC---CHHHHHHHHHHHhCCCCCeEEEEEeC-----CchhchHHHHhhhh
Confidence 34455555433 33444 8999999995 45677888899999888888777643 34678889999996
Q ss_pred ceeeeCCCChHHHHHHHHHHHH
Q 003231 328 YNLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 328 ~~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
.|++.++++++-...++..+.
T Consensus 174 -iv~f~~ls~~ei~~~L~~ia~ 194 (614)
T PRK14971 174 -IFDFNRIQVADIVNHLQYVAS 194 (614)
T ss_pred -eeecCCCCHHHHHHHHHHHHH
Confidence 899999999988887776544
No 485
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.61 E-value=0.011 Score=74.08 Aligned_cols=140 Identities=21% Similarity=0.289 Sum_probs=81.0
Q ss_pred CCCceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhc--------------CCeE
Q 003231 557 KPCRGILLFGPPGTGKTML-AKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKV--------------SPTI 621 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~L-AralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~--------------~psV 621 (837)
...++++++||||+|||+| +-++-+++-..++.++.+.-.. ++..++.+-+..... ...|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 3468999999999999996 4566777777777776543211 122222221111100 1259
Q ss_pred EEecccccccCCCCCcchH---HHHHHHHHH--H----HHhhccccccCCceEEEEEecCCCCCCc-----HHHHHHHHH
Q 003231 622 IFVDEVDSMLGQRTRVGEH---EAMRKIKNE--F----MTHWDGLLTRNGERILVLAATNRPFDLD-----EAIIRRFER 687 (837)
Q Consensus 622 LfIDEID~L~~~r~~~~~~---~~~~~i~~~--L----l~~ld~~~~~~~~~vlVIaTTN~~~~Ld-----~aL~rRF~~ 687 (837)
||.|||+ | |....-..+ -+++.++.. | ...|- .-.++++.+++|++.+.. ..++||- .
T Consensus 1567 LFcDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wv-----TI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v 1638 (3164)
T COG5245 1567 LFCDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWV-----TICGIILYGACNPGTDEGRVKYYERFIRKP-V 1638 (3164)
T ss_pred EEeeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHh-----hhcceEEEccCCCCCCcccCccHHHHhcCc-e
Confidence 9999999 3 322211111 122222221 1 11111 114689999999986543 4444443 5
Q ss_pred hhhcCCCCHHHHHHHHHHHHhh
Q 003231 688 RIMVGLPSAENREMILKTLLAK 709 (837)
Q Consensus 688 ~I~~~~P~~eer~~IL~~~l~~ 709 (837)
.+++.+|.......|...++..
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHH
Confidence 5788899999999998877654
No 486
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.017 Score=64.90 Aligned_cols=100 Identities=22% Similarity=0.360 Sum_probs=72.8
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccccc--------------cccccHHHHHHHHHHHHhc
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA--GASFINVSMSTITSK--------------WFGEDEKNVRALFTLAAKV 617 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el--g~~~i~v~~s~l~s~--------------~~G~~e~~l~~lf~~A~~~ 617 (837)
+++-|..-+|+-|.||.|||||.-.+|..+ ..++++|+..+-... ..-..+.++..+...+...
T Consensus 88 GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 88 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 455667779999999999999999998877 237999998764332 1223466788888888889
Q ss_pred CCeEEEecccccccCCCC--CcchHHHHHHHHHHHHHh
Q 003231 618 SPTIIFVDEVDSMLGQRT--RVGEHEAMRKIKNEFMTH 653 (837)
Q Consensus 618 ~psVLfIDEID~L~~~r~--~~~~~~~~~~i~~~Ll~~ 653 (837)
.|.+++||-|..+....- .++.-...+....+|+..
T Consensus 168 ~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 168 KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 999999999999986542 234444555565665543
No 487
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.61 E-value=0.0018 Score=63.22 Aligned_cols=28 Identities=43% Similarity=0.821 Sum_probs=25.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
++|.|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998877654
No 488
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.60 E-value=0.0017 Score=65.44 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMST 594 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~ 594 (837)
+-++|.||||+|||++|+.++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 46899999999999999999999988777665443
No 489
>PRK14530 adenylate kinase; Provisional
Probab=96.59 E-value=0.0021 Score=67.09 Aligned_cols=30 Identities=37% Similarity=0.666 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
.|+|.||||+||||+|+.||+.+|++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999887743
No 490
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.59 E-value=0.0018 Score=65.78 Aligned_cols=33 Identities=39% Similarity=0.710 Sum_probs=27.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
|+|+||||+|||++|+.||..+|+.++. +.++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 7999999999999999999999877654 44443
No 491
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.58 E-value=0.012 Score=63.69 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=37.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc---cc-ccccHHHHHHHHHHHH---hcCCeEEEecccccc
Q 003231 562 ILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITS---KW-FGEDEKNVRALFTLAA---KVSPTIIFVDEVDSM 630 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s---~~-~G~~e~~l~~lf~~A~---~~~psVLfIDEID~L 630 (837)
|+|+|.||+|||++|+.|+..+ +..++.++-..+.- .| -...++.++..+..+- -....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999999876 56777777544431 12 1233444444433321 123479999998765
No 492
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.56 E-value=0.0073 Score=72.16 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=62.8
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-ccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG---ASFINVSMS-TIT 596 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~~s-~l~ 596 (837)
..++++++-.+...+.+.+++.. +...+|++||+|+||||+..++...++ .+++.+.-. ++.
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~--------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK--------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 35788888778888888877753 445689999999999999988887774 234332211 111
Q ss_pred -----ccccc-ccHHHHHHHHHHHHhcCCeEEEecccc
Q 003231 597 -----SKWFG-EDEKNVRALFTLAAKVSPTIIFVDEVD 628 (837)
Q Consensus 597 -----s~~~G-~~e~~l~~lf~~A~~~~psVLfIDEID 628 (837)
...+. .........+..+.++.|.||+|.||-
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11111 111234566777788899999999995
No 493
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.56 E-value=0.011 Score=64.57 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA----G-ASFINVSMST 594 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el----g-~~~i~v~~s~ 594 (837)
.+..++|+||+|+||||++..+|..+ | ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45679999999999999999998766 3 5666666654
No 494
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.56 E-value=0.067 Score=57.96 Aligned_cols=90 Identities=20% Similarity=0.340 Sum_probs=59.0
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHH
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEK 605 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~ 605 (837)
+++-.+++.+.|.++.+. ++ .|..+.||.|.+|+||+++++..|...+..++.+..+.-.+ ..+-..
T Consensus 9 ~lVlf~~ai~hi~ri~Rv-L~----------~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV-LS----------QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp -----HHHHHHHHHHHHH-HC----------STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred ceeeHHHHHHHHHHHHHH-Hc----------CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 477778888888877765 33 35688999999999999999999999999999887653111 112234
Q ss_pred HHHHHHHHHH-hcCCeEEEecccc
Q 003231 606 NVRALFTLAA-KVSPTIIFVDEVD 628 (837)
Q Consensus 606 ~l~~lf~~A~-~~~psVLfIDEID 628 (837)
.++.++..|. +..+.+++|+|-+
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHHhccCCCeEEEecCcc
Confidence 4666666554 4567888887754
No 495
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.54 E-value=0.052 Score=60.30 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
++.-++|.||+|+||||++..+|..+ |..+.-+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45678999999999999999999877 4555555543
No 496
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.54 E-value=0.027 Score=62.63 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=45.9
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI 595 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l 595 (837)
+.+.+..+..+..++-. ++. .-|..+.|+|-.|||||.+.+++-+.++.+.+.++|-+.
T Consensus 8 v~~Re~qi~~L~~Llg~---~~~-------~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN---NSC-------TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred ccchHHHHHHHHHHhCC---CCc-------ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 56777777777766622 222 345678999999999999999999999999998887553
No 497
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.54 E-value=0.054 Score=65.13 Aligned_cols=151 Identities=9% Similarity=0.110 Sum_probs=80.0
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHh-------------ccCCEEEEecccccCCCCCCchhHHHHccCCceeeeC
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKK-------------LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVK 333 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~-------------l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~ 333 (837)
..=|||||||+. +.. ..-+.|-..++. ++-++++|++..-.+ ......++|..||..+|.+.
T Consensus 84 ~~GvL~lDEi~r-l~~--~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e--~~g~L~~~LldRf~l~v~~~ 158 (589)
T TIGR02031 84 PRGVLYVDMANL-LDD--GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE--GGGGLPDHLLDRLALHVSLE 158 (589)
T ss_pred CCCcEeccchhh-CCH--HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc--ccCCCCHHHHHhccCeeecC
Confidence 456899999999 432 222223333432 123567776433222 11367899999999888776
Q ss_pred -CCChHHHHHHHHHHHHHHHHHhhcccchhHHHH-HhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCc
Q 003231 334 -LPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAE-VLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDP 411 (837)
Q Consensus 334 -~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~-vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~ 411 (837)
+|..++|..|++..+......... ....... +.. ......+..++++.++.|+..++.+.+.....+
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~--~~~~~~~~i~~---------ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~ 227 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMND--ELELLRGQIEA---------ARELLPQVTISAEQVKELVLTAASLGISGHRAD 227 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcch--hhHHHHHHHHH---------HHHhcCCccCCHHHHHHHHHHHHHcCCCCccHH
Confidence 567777999998765322111000 0000000 001 111233344667777777766655554211100
Q ss_pred c----------ccCCceeecHHhHHHHHHHhh
Q 003231 412 E----------YRNGKLVISSKSLSHGLSIFQ 433 (837)
Q Consensus 412 ~----------~~~~~~~i~~~~~~~~l~~~~ 433 (837)
. .=+++-.|+.+|++.++.++=
T Consensus 228 i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 228 LFAVRAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 0 013444688889988887543
No 498
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.53 E-value=0.019 Score=61.90 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s 593 (837)
++.+...++|.||||+|||+++..+|..+ |.+++.+++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 44667789999999999999999887664 6677777653
No 499
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.53 E-value=0.06 Score=58.47 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
.+++.++|.||+|+|||+++..+|..+ |..+.-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 346778899999999999999998776 5566656654
No 500
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.037 Score=63.27 Aligned_cols=70 Identities=20% Similarity=0.352 Sum_probs=41.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc-------c---cc---ccHHHHHHHHHHHHhcCCeE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMSTITSK-------W---FG---EDEKNVRALFTLAAKVSPTI 621 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s~l~s~-------~---~G---~~e~~l~~lf~~A~~~~psV 621 (837)
+..++|.||+|+||||++..+|..+ |..+..+++..+... | .| .....+..+...+......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999999999754 444555555432111 0 00 11112334444444455678
Q ss_pred EEecccc
Q 003231 622 IFVDEVD 628 (837)
Q Consensus 622 LfIDEID 628 (837)
||||=..
T Consensus 303 VLIDTaG 309 (432)
T PRK12724 303 ILIDTAG 309 (432)
T ss_pred EEEeCCC
Confidence 8888643
Done!