Query 003231
Match_columns 837
No_of_seqs 616 out of 3785
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 3.2E-67 1.1E-71 630.9 20.8 538 66-822 199-762 (806)
2 1ypw_A Transitional endoplasmi 100.0 5E-47 1.7E-51 462.1 10.1 539 66-823 199-763 (806)
3 4b4t_J 26S protease regulatory 100.0 7E-44 2.4E-48 397.5 23.1 248 519-806 142-394 (405)
4 4b4t_H 26S protease regulatory 100.0 1E-42 3.5E-47 392.5 23.1 260 519-819 203-467 (467)
5 4b4t_I 26S protease regulatory 100.0 5.6E-43 1.9E-47 391.1 20.5 251 518-808 175-430 (437)
6 4b4t_M 26S protease regulatory 100.0 1.5E-42 5.1E-47 392.1 19.4 250 518-807 174-428 (434)
7 4b4t_L 26S protease subunit RP 100.0 3.6E-42 1.2E-46 389.3 20.1 250 519-808 175-429 (437)
8 4b4t_K 26S protease regulatory 100.0 6.6E-41 2.2E-45 378.4 21.7 247 519-805 166-419 (428)
9 3cf2_A TER ATPase, transitiona 100.0 5.9E-42 2E-46 411.9 9.8 287 520-830 199-488 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.5E-37 8.7E-42 339.2 25.1 303 519-826 6-322 (322)
11 3eie_A Vacuolar protein sortin 100.0 1.7E-37 5.7E-42 340.3 16.8 304 519-827 12-322 (322)
12 2qp9_X Vacuolar protein sortin 100.0 2E-36 6.8E-41 336.5 23.0 308 514-827 40-355 (355)
13 1r6b_X CLPA protein; AAA+, N-t 100.0 4.5E-35 1.5E-39 356.0 31.4 390 254-748 265-720 (758)
14 3hu3_A Transitional endoplasmi 100.0 8.4E-36 2.9E-40 344.0 13.1 280 522-825 201-483 (489)
15 2zan_A Vacuolar protein sortin 100.0 3.8E-35 1.3E-39 335.5 17.6 307 515-826 124-444 (444)
16 3cf0_A Transitional endoplasmi 100.0 6E-35 2E-39 317.2 13.4 287 519-822 9-300 (301)
17 2x8a_A Nuclear valosin-contain 100.0 2.3E-34 7.9E-39 308.8 15.9 259 520-808 5-271 (274)
18 3pxi_A Negative regulator of g 100.0 1.4E-33 4.7E-38 343.0 24.0 428 256-747 256-728 (758)
19 3d8b_A Fidgetin-like protein 1 100.0 1.8E-33 6.3E-38 312.8 23.0 277 519-825 78-356 (357)
20 1qvr_A CLPB protein; coiled co 100.0 9.6E-33 3.3E-37 339.5 26.7 447 255-749 250-825 (854)
21 3b9p_A CG5977-PA, isoform A; A 100.0 1.2E-32 4E-37 297.2 17.9 277 519-825 15-294 (297)
22 3vfd_A Spastin; ATPase, microt 100.0 3.7E-32 1.3E-36 305.5 18.6 277 519-825 109-387 (389)
23 2ce7_A Cell division protein F 100.0 2.3E-31 8E-36 305.0 22.3 264 519-823 10-282 (476)
24 3h4m_A Proteasome-activating n 100.0 5E-31 1.7E-35 282.5 22.1 267 520-826 12-283 (285)
25 1lv7_A FTSH; alpha/beta domain 100.0 4E-30 1.4E-34 272.0 21.5 246 517-803 4-254 (257)
26 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.9E-30 9.9E-35 272.5 14.3 247 521-808 2-256 (262)
27 2dhr_A FTSH; AAA+ protein, hex 100.0 8.4E-30 2.9E-34 293.7 17.2 268 514-823 21-297 (499)
28 1ixz_A ATP-dependent metallopr 100.0 6.6E-28 2.2E-32 254.5 17.6 226 517-745 8-238 (254)
29 1ypw_A Transitional endoplasmi 100.0 2.9E-28 9.9E-33 297.1 15.0 287 520-830 199-488 (806)
30 4b4t_J 26S protease regulatory 99.9 3.5E-27 1.2E-31 263.1 21.7 234 66-434 143-391 (405)
31 2r62_A Cell division protease 99.9 2.7E-30 9.3E-35 274.5 -5.5 252 517-808 3-260 (268)
32 1iy2_A ATP-dependent metallopr 99.9 1.8E-26 6.3E-31 247.1 20.5 223 520-745 35-262 (278)
33 4b4t_I 26S protease regulatory 99.9 1.2E-26 4.1E-31 259.5 18.5 236 64-434 175-425 (437)
34 4b4t_M 26S protease regulatory 99.9 2.3E-26 7.7E-31 260.0 19.9 236 64-434 174-424 (434)
35 4b4t_H 26S protease regulatory 99.9 1.6E-25 5.6E-30 252.6 21.5 234 65-434 203-452 (467)
36 4b4t_L 26S protease subunit RP 99.9 9.3E-26 3.2E-30 255.2 18.5 236 64-434 174-424 (437)
37 4b4t_K 26S protease regulatory 99.9 1.8E-24 6.1E-29 244.3 21.0 232 64-430 165-412 (428)
38 3t15_A Ribulose bisphosphate c 99.9 4.5E-23 1.5E-27 223.0 15.2 175 555-734 32-222 (293)
39 3syl_A Protein CBBX; photosynt 99.8 2.1E-20 7.1E-25 202.1 13.1 216 523-749 28-268 (309)
40 2c9o_A RUVB-like 1; hexameric 99.8 2.2E-22 7.6E-27 230.7 -4.9 201 521-738 33-262 (456)
41 1xwi_A SKD1 protein; VPS4B, AA 99.8 2E-19 6.8E-24 197.0 17.7 215 64-405 5-231 (322)
42 3uk6_A RUVB-like 2; hexameric 99.8 9E-19 3.1E-23 193.9 18.8 199 522-745 41-312 (368)
43 3pfi_A Holliday junction ATP-d 99.8 1.5E-18 5.3E-23 190.1 20.3 205 502-744 15-235 (338)
44 2qp9_X Vacuolar protein sortin 99.8 1.2E-18 4E-23 193.5 16.0 220 60-406 40-270 (355)
45 3cf0_A Transitional endoplasmi 99.8 1.6E-18 5.4E-23 187.9 15.1 240 65-432 9-281 (301)
46 1ofh_A ATP-dependent HSL prote 99.8 2.6E-18 8.9E-23 185.0 15.5 217 527-743 17-273 (310)
47 3eie_A Vacuolar protein sortin 99.8 2.5E-18 8.6E-23 188.0 15.5 216 64-406 11-237 (322)
48 2zan_A Vacuolar protein sortin 99.8 1.6E-18 5.5E-23 198.0 14.0 226 52-405 116-353 (444)
49 2x8a_A Nuclear valosin-contain 99.8 3.6E-18 1.2E-22 182.9 14.7 244 67-434 6-266 (274)
50 1d2n_A N-ethylmaleimide-sensit 99.8 1E-18 3.5E-23 186.1 9.5 205 526-741 34-247 (272)
51 3hws_A ATP-dependent CLP prote 99.7 1.6E-18 5.5E-23 192.5 9.8 221 527-747 17-326 (363)
52 3m6a_A ATP-dependent protease 99.7 6E-18 2.1E-22 197.9 12.5 207 523-746 79-318 (543)
53 3h4m_A Proteasome-activating n 99.7 2.4E-16 8.2E-21 168.3 22.1 235 65-434 11-260 (285)
54 2z4s_A Chromosomal replication 99.7 8.3E-17 2.8E-21 183.6 18.6 198 521-743 101-313 (440)
55 3pvs_A Replication-associated 99.7 5.5E-17 1.9E-21 185.2 17.0 191 504-743 14-222 (447)
56 1hqc_A RUVB; extended AAA-ATPa 99.7 2.6E-17 8.9E-22 178.8 13.5 193 523-743 10-218 (324)
57 2chg_A Replication factor C sm 99.7 5.3E-16 1.8E-20 157.1 21.0 189 505-739 6-207 (226)
58 4fcw_A Chaperone protein CLPB; 99.7 7.6E-17 2.6E-21 174.1 15.0 204 527-749 19-284 (311)
59 3pxg_A Negative regulator of g 99.7 1.4E-17 4.9E-22 191.3 8.9 182 523-743 178-385 (468)
60 3hu3_A Transitional endoplasmi 99.7 2.6E-16 9E-21 181.4 19.2 241 67-434 200-461 (489)
61 1g41_A Heat shock protein HSLU 99.7 2.3E-16 7.9E-21 178.7 18.1 179 526-704 16-346 (444)
62 3d8b_A Fidgetin-like protein 1 99.7 1.4E-15 4.6E-20 168.9 23.5 255 52-434 66-336 (357)
63 3u61_B DNA polymerase accessor 99.7 3.3E-16 1.1E-20 170.7 17.3 193 503-740 13-220 (324)
64 1njg_A DNA polymerase III subu 99.7 1.1E-15 3.7E-20 156.4 19.2 191 504-739 11-231 (250)
65 3bos_A Putative DNA replicatio 99.7 1.9E-15 6.5E-20 155.8 20.8 186 522-743 25-224 (242)
66 2v1u_A Cell division control p 99.7 1.4E-15 4.9E-20 168.1 20.2 201 525-744 19-257 (387)
67 1l8q_A Chromosomal replication 99.7 1.1E-15 3.8E-20 166.7 18.9 195 521-742 7-214 (324)
68 2qz4_A Paraplegin; AAA+, SPG7, 99.7 7.2E-16 2.5E-20 162.1 16.8 233 67-434 2-251 (262)
69 3b9p_A CG5977-PA, isoform A; A 99.7 1.8E-15 6.1E-20 162.6 20.1 254 52-433 3-273 (297)
70 2ce7_A Cell division protein F 99.7 2.1E-15 7.3E-20 172.9 21.9 238 59-432 3-256 (476)
71 1lv7_A FTSH; alpha/beta domain 99.7 2E-15 6.8E-20 159.1 20.1 234 62-432 3-252 (257)
72 3vfd_A Spastin; ATPase, microt 99.7 6.4E-16 2.2E-20 173.3 17.1 241 65-432 109-365 (389)
73 1jbk_A CLPB protein; beta barr 99.7 6.9E-17 2.4E-21 159.8 6.7 157 523-703 20-194 (195)
74 1um8_A ATP-dependent CLP prote 99.6 5.2E-16 1.8E-20 173.0 13.6 220 527-746 23-342 (376)
75 1sxj_A Activator 1 95 kDa subu 99.6 2.7E-16 9.3E-21 182.9 10.7 213 502-739 25-255 (516)
76 2r44_A Uncharacterized protein 99.6 5.6E-16 1.9E-20 169.4 12.4 159 523-710 25-201 (331)
77 1sxj_D Activator 1 41 kDa subu 99.6 2.8E-15 9.7E-20 164.3 17.8 194 503-742 24-241 (353)
78 2qby_B CDC6 homolog 3, cell di 99.6 5.9E-15 2E-19 163.7 20.5 192 525-743 20-252 (384)
79 3pxi_A Negative regulator of g 99.6 6E-16 2E-20 188.0 12.8 183 523-744 178-386 (758)
80 1g8p_A Magnesium-chelatase 38 99.6 3.3E-15 1.1E-19 163.7 17.4 159 521-706 20-231 (350)
81 1r6b_X CLPA protein; AAA+, N-t 99.6 2.4E-15 8.1E-20 182.7 15.9 205 505-741 175-407 (758)
82 1iqp_A RFCS; clamp loader, ext 99.6 1.1E-14 3.7E-19 157.6 18.7 191 504-740 13-216 (327)
83 1qvr_A CLPB protein; coiled co 99.6 1.5E-15 5.3E-20 186.7 13.5 198 523-744 168-393 (854)
84 1in4_A RUVB, holliday junction 99.6 2E-14 6.7E-19 158.0 20.2 194 523-745 23-232 (334)
85 2p65_A Hypothetical protein PF 99.6 9.5E-16 3.2E-20 151.5 8.7 159 504-695 10-187 (187)
86 2qby_A CDC6 homolog 1, cell di 99.6 2.5E-14 8.7E-19 157.8 21.0 200 524-744 19-253 (386)
87 2chq_A Replication factor C sm 99.6 4.5E-15 1.5E-19 160.1 13.9 185 523-740 15-208 (319)
88 1sxj_B Activator 1 37 kDa subu 99.6 1.2E-14 4.2E-19 156.9 16.6 191 504-740 9-213 (323)
89 2c9o_A RUVB-like 1; hexameric 99.6 2.1E-15 7.3E-20 172.7 11.0 108 619-744 296-418 (456)
90 1fnn_A CDC6P, cell division co 99.6 1.1E-13 3.9E-18 153.3 24.4 199 525-745 17-256 (389)
91 2dhr_A FTSH; AAA+ protein, hex 99.6 1.4E-14 4.7E-19 167.1 16.4 237 59-432 20-271 (499)
92 3te6_A Regulatory protein SIR3 99.6 1.7E-14 5.8E-19 157.1 16.1 159 527-709 22-213 (318)
93 1jr3_A DNA polymerase III subu 99.6 2.2E-14 7.5E-19 158.5 16.2 192 505-741 5-226 (373)
94 2r62_A Cell division protease 99.6 9.5E-16 3.3E-20 162.3 5.0 233 61-430 1-251 (268)
95 1ixz_A ATP-dependent metallopr 99.6 7E-14 2.4E-18 147.0 18.3 230 63-429 8-253 (254)
96 1sxj_E Activator 1 40 kDa subu 99.5 4.8E-14 1.6E-18 155.1 16.6 185 523-742 12-243 (354)
97 1iy2_A ATP-dependent metallopr 99.5 2.4E-13 8.1E-18 145.2 20.3 230 64-429 33-277 (278)
98 2bjv_A PSP operon transcriptio 99.5 1.1E-13 3.8E-18 146.3 15.7 193 522-741 3-238 (265)
99 3pxg_A Negative regulator of g 99.5 3E-14 1E-18 163.7 10.4 152 256-433 256-407 (468)
100 1sxj_C Activator 1 40 kDa subu 99.5 4.4E-13 1.5E-17 147.3 17.9 188 503-736 12-212 (340)
101 3f9v_A Minichromosome maintena 99.5 1.6E-14 5.4E-19 170.5 6.1 166 527-710 297-493 (595)
102 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.1E-13 3.8E-18 159.6 10.9 193 527-748 24-271 (500)
103 3t15_A Ribulose bisphosphate c 99.4 6E-13 2.1E-17 143.6 13.8 190 74-396 8-223 (293)
104 1ojl_A Transcriptional regulat 99.4 6.5E-13 2.2E-17 144.1 12.4 191 526-743 3-235 (304)
105 3n70_A Transport activator; si 99.4 1.3E-12 4.5E-17 125.9 10.8 131 526-694 2-142 (145)
106 1a5t_A Delta prime, HOLB; zinc 99.3 1.3E-11 4.5E-16 135.5 16.5 175 529-739 6-208 (334)
107 3co5_A Putative two-component 99.3 4.3E-13 1.5E-17 129.1 3.4 123 526-685 5-132 (143)
108 3k1j_A LON protease, ATP-depen 99.2 6.7E-11 2.3E-15 140.0 16.5 47 523-584 39-85 (604)
109 2gno_A DNA polymerase III, gam 99.2 1E-10 3.6E-15 126.8 16.6 142 529-707 1-152 (305)
110 1w5s_A Origin recognition comp 99.2 1.5E-10 5.2E-15 129.2 17.9 206 525-745 22-275 (412)
111 3cmw_A Protein RECA, recombina 99.2 3.6E-11 1.2E-15 154.1 11.4 154 518-674 1013-1218(1706)
112 4akg_A Glutathione S-transfera 99.1 3.3E-09 1.1E-13 141.6 26.8 90 526-628 1587-1677(2695)
113 3syl_A Protein CBBX; photosynt 99.1 9.4E-11 3.2E-15 126.2 8.5 180 67-350 26-219 (309)
114 1ofh_A ATP-dependent HSL prote 99.1 2E-09 6.9E-14 115.3 17.7 190 46-346 3-213 (310)
115 1jbk_A CLPB protein; beta barr 99.0 3.5E-10 1.2E-14 111.3 7.5 77 266-345 114-195 (195)
116 3vlf_B 26S protease regulatory 99.0 5.3E-10 1.8E-14 98.8 7.7 86 695-819 2-88 (88)
117 2krk_A 26S protease regulatory 99.0 4.7E-10 1.6E-14 98.7 7.0 76 691-804 8-84 (86)
118 3kw6_A 26S protease regulatory 99.0 8.4E-10 2.9E-14 95.1 8.1 74 692-803 1-75 (78)
119 3ec2_A DNA replication protein 98.9 1.4E-09 4.8E-14 107.9 8.9 98 521-630 6-112 (180)
120 4akg_A Glutathione S-transfera 98.9 2.7E-09 9.1E-14 142.5 14.1 142 558-710 1266-1434(2695)
121 3uk6_A RUVB-like 2; hexameric 98.9 2.8E-08 9.5E-13 109.5 17.7 134 268-431 190-329 (368)
122 3hws_A ATP-dependent CLP prote 98.9 5.3E-09 1.8E-13 115.8 11.5 85 47-146 4-88 (363)
123 3pfi_A Holliday junction ATP-d 98.8 7E-08 2.4E-12 105.2 18.8 209 69-431 27-253 (338)
124 3aji_B S6C, proteasome (prosom 98.8 2.7E-09 9.4E-14 93.0 6.0 74 695-806 2-76 (83)
125 3u61_B DNA polymerase accessor 98.8 2.4E-08 8.1E-13 108.4 13.9 156 69-350 24-180 (324)
126 2p65_A Hypothetical protein PF 98.8 8.1E-09 2.8E-13 101.4 9.0 68 266-336 114-187 (187)
127 1g41_A Heat shock protein HSLU 98.8 6.9E-09 2.4E-13 117.6 8.7 179 46-346 3-190 (444)
128 1ny5_A Transcriptional regulat 98.8 2.2E-08 7.5E-13 112.1 12.2 188 526-742 138-369 (387)
129 3cmw_A Protein RECA, recombina 98.8 6.4E-08 2.2E-12 124.4 17.8 81 555-635 1427-1526(1706)
130 2kjq_A DNAA-related protein; s 98.8 2.1E-08 7.1E-13 97.2 9.8 106 558-692 35-146 (149)
131 3m6a_A ATP-dependent protease 98.8 1.2E-08 4.1E-13 119.2 9.4 144 265-430 174-339 (543)
132 2w58_A DNAI, primosome compone 98.7 1.3E-08 4.3E-13 102.7 7.5 113 507-630 7-127 (202)
133 1um8_A ATP-dependent CLP prote 98.7 3.9E-08 1.3E-12 109.2 11.4 85 47-146 10-109 (376)
134 2chg_A Replication factor C sm 98.7 8.3E-07 2.8E-11 89.0 19.3 75 266-349 101-175 (226)
135 2fna_A Conserved hypothetical 98.7 1.1E-07 3.8E-12 103.3 13.1 185 523-738 11-252 (357)
136 3f8t_A Predicted ATPase involv 98.7 3.9E-08 1.3E-12 111.2 9.2 147 527-698 215-385 (506)
137 3dzd_A Transcriptional regulat 98.6 9.3E-08 3.2E-12 106.3 11.7 187 527-741 131-359 (368)
138 2r44_A Uncharacterized protein 98.6 1.2E-06 4.1E-11 95.2 20.1 78 269-349 111-199 (331)
139 2qen_A Walker-type ATPase; unk 98.6 3.8E-07 1.3E-11 98.8 15.8 187 524-738 11-248 (350)
140 2v1u_A Cell division control p 98.6 1.7E-06 5.8E-11 95.1 21.1 94 252-349 117-215 (387)
141 1sxj_A Activator 1 95 kDa subu 98.6 4.1E-07 1.4E-11 105.6 16.2 185 69-349 37-223 (516)
142 1l8q_A Chromosomal replication 98.6 4.3E-07 1.5E-11 98.6 15.0 78 267-349 98-180 (324)
143 2vhj_A Ntpase P4, P4; non- hyd 98.6 2.1E-08 7.2E-13 108.7 4.4 120 557-681 121-242 (331)
144 1d2n_A N-ethylmaleimide-sensit 98.6 1.2E-07 4.1E-12 100.4 9.9 38 107-144 62-99 (272)
145 1g8p_A Magnesium-chelatase 38 98.6 1.2E-06 4E-11 95.5 18.0 76 267-349 144-233 (350)
146 3pvs_A Replication-associated 98.6 1.6E-07 5.4E-12 107.1 10.9 75 266-349 105-179 (447)
147 2z4s_A Chromosomal replication 98.6 4.3E-07 1.5E-11 103.4 14.3 132 267-430 194-330 (440)
148 3bos_A Putative DNA replicatio 98.5 6.4E-07 2.2E-11 91.6 12.8 132 267-430 104-241 (242)
149 4fcw_A Chaperone protein CLPB; 98.5 1.2E-06 4.1E-11 93.9 15.0 85 267-354 119-235 (311)
150 1hqc_A RUVB; extended AAA-ATPa 98.5 4.3E-07 1.5E-11 98.0 11.6 154 69-348 10-181 (324)
151 2qgz_A Helicase loader, putati 98.4 1.6E-07 5.6E-12 101.8 6.8 113 506-630 105-226 (308)
152 2dzn_B 26S protease regulatory 98.4 3.9E-08 1.3E-12 85.6 1.2 68 697-802 1-69 (82)
153 1njg_A DNA polymerase III subu 98.4 5.8E-06 2E-10 83.7 16.2 76 265-349 124-199 (250)
154 2r2a_A Uncharacterized protein 98.3 1.1E-07 3.7E-12 96.8 1.3 125 560-695 6-154 (199)
155 2qby_B CDC6 homolog 3, cell di 98.3 5.7E-06 2E-10 91.1 15.2 88 252-349 122-211 (384)
156 1sxj_B Activator 1 37 kDa subu 98.3 5.9E-06 2E-10 88.6 13.8 74 267-349 107-180 (323)
157 1iqp_A RFCS; clamp loader, ext 98.2 1.1E-05 3.8E-10 86.6 13.8 73 266-347 109-181 (327)
158 2qby_A CDC6 homolog 1, cell di 98.2 3.1E-05 1.1E-09 84.8 17.5 93 252-348 115-210 (386)
159 3vkg_A Dynein heavy chain, cyt 98.2 2.9E-06 1E-10 114.4 10.9 140 559-709 1304-1471(3245)
160 1tue_A Replication protein E1; 98.2 2.2E-06 7.6E-11 87.0 6.8 109 559-693 58-178 (212)
161 2chq_A Replication factor C sm 98.1 2.3E-06 7.8E-11 91.7 7.2 74 266-348 101-174 (319)
162 3cmu_A Protein RECA, recombina 98.1 6.1E-06 2.1E-10 107.5 10.8 117 554-673 1422-1562(2050)
163 1fnn_A CDC6P, cell division co 98.1 5.2E-05 1.8E-09 83.4 16.7 90 252-348 112-206 (389)
164 1jr3_A DNA polymerase III subu 98.1 2.5E-05 8.6E-10 85.6 14.1 75 266-349 118-192 (373)
165 1sxj_D Activator 1 41 kDa subu 98.0 2.7E-05 9.1E-10 84.7 13.4 73 267-348 133-205 (353)
166 3te6_A Regulatory protein SIR3 98.0 3.2E-05 1.1E-09 84.0 13.5 81 264-349 129-212 (318)
167 3vkg_A Dynein heavy chain, cyt 98.0 2.2E-05 7.6E-10 106.1 13.8 134 560-712 605-755 (3245)
168 3co5_A Putative two-component 98.0 3.8E-06 1.3E-10 80.2 4.6 39 107-146 25-63 (143)
169 2bjv_A PSP operon transcriptio 98.0 6.2E-05 2.1E-09 78.9 14.0 65 67-146 2-69 (265)
170 1jr3_D DNA polymerase III, del 98.0 4.5E-05 1.5E-09 83.3 13.0 157 558-740 17-189 (343)
171 1u0j_A DNA replication protein 97.9 9.9E-06 3.4E-10 85.7 5.3 27 559-585 104-130 (267)
172 1sxj_E Activator 1 40 kDa subu 97.8 0.00015 5E-09 79.1 14.0 73 267-348 134-206 (354)
173 1in4_A RUVB, holliday junction 97.8 0.0004 1.4E-08 75.7 16.6 131 267-432 102-250 (334)
174 1ye8_A Protein THEP1, hypothet 97.8 4E-05 1.4E-09 76.3 7.7 28 561-588 2-29 (178)
175 3n70_A Transport activator; si 97.8 1.5E-05 5E-10 76.2 4.2 40 106-146 21-63 (145)
176 3kw6_A 26S protease regulatory 97.6 0.00012 4.1E-09 62.5 7.7 74 333-433 1-74 (78)
177 1a5t_A Delta prime, HOLB; zinc 97.6 0.00029 1E-08 76.8 12.8 72 267-347 108-179 (334)
178 3f9v_A Minichromosome maintena 97.6 8.3E-05 2.8E-09 87.6 7.9 28 111-138 329-356 (595)
179 1sxj_C Activator 1 40 kDa subu 97.6 0.00061 2.1E-08 74.2 14.2 72 267-347 110-181 (340)
180 3hr8_A Protein RECA; alpha and 97.5 0.00031 1.1E-08 77.4 11.2 78 555-632 57-153 (356)
181 2krk_A 26S protease regulatory 97.5 0.00017 5.6E-09 63.2 7.1 76 332-434 8-83 (86)
182 3nbx_X ATPase RAVA; AAA+ ATPas 97.5 0.00029 1E-08 81.1 10.8 74 268-347 110-195 (500)
183 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00033 1.1E-08 70.9 9.6 37 556-592 20-59 (235)
184 1ojl_A Transcriptional regulat 97.5 5.3E-05 1.8E-09 81.7 3.7 41 107-147 23-66 (304)
185 1xp8_A RECA protein, recombina 97.4 0.00067 2.3E-08 75.1 12.0 78 555-632 70-166 (366)
186 2cvh_A DNA repair and recombin 97.4 0.00055 1.9E-08 68.9 10.5 40 555-594 16-55 (220)
187 1z6t_A APAF-1, apoptotic prote 97.4 0.00048 1.6E-08 80.6 11.1 170 525-735 124-327 (591)
188 1n0w_A DNA repair protein RAD5 97.4 0.00059 2E-08 69.8 10.1 79 555-633 20-134 (243)
189 1svm_A Large T antigen; AAA+ f 97.3 0.00026 8.9E-09 78.7 7.7 101 556-677 166-267 (377)
190 2zr9_A Protein RECA, recombina 97.3 0.00043 1.5E-08 76.2 8.9 78 555-632 57-153 (349)
191 1w5s_A Origin recognition comp 97.3 0.0016 5.5E-08 72.0 13.3 93 252-348 125-228 (412)
192 3upu_A ATP-dependent DNA helic 97.3 0.00044 1.5E-08 78.8 8.6 56 523-592 22-82 (459)
193 2gno_A DNA polymerase III, gam 97.2 0.0017 5.7E-08 70.1 12.5 70 268-348 83-152 (305)
194 1qhx_A CPT, protein (chloramph 97.2 0.00045 1.5E-08 67.4 7.2 34 560-593 4-37 (178)
195 3cmu_A Protein RECA, recombina 97.2 0.00073 2.5E-08 88.4 10.4 115 555-671 728-866 (2050)
196 2z43_A DNA repair and recombin 97.2 0.00088 3E-08 72.7 9.6 78 555-632 103-217 (324)
197 1u94_A RECA protein, recombina 97.2 0.00084 2.9E-08 74.0 9.2 78 555-632 59-155 (356)
198 3io5_A Recombination and repai 97.1 0.0018 6.2E-08 70.0 11.0 77 555-632 25-125 (333)
199 3trf_A Shikimate kinase, SK; a 97.1 0.00025 8.5E-09 69.8 3.9 33 559-591 5-37 (185)
200 1v5w_A DMC1, meiotic recombina 97.1 0.0014 4.6E-08 71.9 10.0 78 555-632 118-233 (343)
201 2orw_A Thymidine kinase; TMTK, 97.1 0.00021 7.1E-09 71.4 3.2 31 560-590 4-37 (184)
202 2r8r_A Sensor protein; KDPD, P 97.1 0.0038 1.3E-07 64.3 12.3 33 560-592 7-42 (228)
203 3lda_A DNA repair protein RAD5 97.0 0.002 6.8E-08 72.1 10.4 79 555-633 174-288 (400)
204 3vaa_A Shikimate kinase, SK; s 97.0 0.00036 1.2E-08 69.9 4.0 35 557-591 23-57 (199)
205 4a74_A DNA repair and recombin 97.0 0.0017 5.7E-08 65.8 9.0 40 555-594 21-69 (231)
206 3sfz_A APAF-1, apoptotic pepti 97.0 0.0072 2.4E-07 76.3 16.6 170 525-733 124-325 (1249)
207 2rhm_A Putative kinase; P-loop 96.9 0.00051 1.7E-08 67.8 4.3 34 557-590 3-36 (193)
208 2ehv_A Hypothetical protein PH 96.9 0.0034 1.2E-07 64.3 10.4 38 555-592 26-67 (251)
209 3jvv_A Twitching mobility prot 96.9 0.0018 6.3E-08 71.3 8.4 71 558-628 122-206 (356)
210 2dr3_A UPF0273 protein PH0284; 96.8 0.0055 1.9E-07 62.6 11.3 39 555-593 19-60 (247)
211 3kb2_A SPBC2 prophage-derived 96.8 0.00067 2.3E-08 65.5 4.1 31 561-591 3-33 (173)
212 1vma_A Cell division protein F 96.8 0.013 4.5E-07 63.1 14.7 73 557-629 102-197 (306)
213 2b8t_A Thymidine kinase; deoxy 96.8 0.0025 8.6E-08 65.6 8.6 72 558-630 11-101 (223)
214 3iij_A Coilin-interacting nucl 96.8 0.00073 2.5E-08 66.3 4.1 33 558-590 10-42 (180)
215 2a5y_B CED-4; apoptosis; HET: 96.8 0.0036 1.2E-07 72.8 10.3 165 528-728 131-330 (549)
216 1via_A Shikimate kinase; struc 96.7 0.00069 2.4E-08 66.2 3.5 29 561-589 6-34 (175)
217 2p5t_B PEZT; postsegregational 96.7 0.003 1E-07 65.8 8.4 39 557-595 30-68 (253)
218 2iyv_A Shikimate kinase, SK; t 96.7 0.00077 2.6E-08 66.3 3.6 31 561-591 4-34 (184)
219 1zuh_A Shikimate kinase; alpha 96.7 0.00081 2.8E-08 65.2 3.7 32 559-590 7-38 (168)
220 2i1q_A DNA repair and recombin 96.7 0.0026 9E-08 68.7 7.9 78 555-632 94-218 (322)
221 1pzn_A RAD51, DNA repair and r 96.7 0.0044 1.5E-07 68.1 9.8 40 555-594 127-175 (349)
222 1y63_A LMAJ004144AAA protein; 96.7 0.00088 3E-08 66.3 3.7 33 559-591 10-43 (184)
223 1kag_A SKI, shikimate kinase I 96.7 0.0012 4.3E-08 63.9 4.7 30 560-589 5-34 (173)
224 3dm5_A SRP54, signal recogniti 96.6 0.015 5E-07 65.8 13.8 73 558-630 99-194 (443)
225 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.8E-08 65.5 4.1 33 558-590 8-40 (196)
226 3aji_B S6C, proteasome (prosom 96.6 0.0045 1.5E-07 53.3 7.3 72 336-434 2-73 (83)
227 2cdn_A Adenylate kinase; phosp 96.6 0.0012 4.2E-08 65.9 4.1 32 559-590 20-51 (201)
228 2zts_A Putative uncharacterize 96.6 0.011 3.7E-07 60.4 11.3 39 555-593 26-68 (251)
229 1gvn_B Zeta; postsegregational 96.6 0.0043 1.5E-07 66.2 8.5 38 558-595 32-69 (287)
230 1tev_A UMP-CMP kinase; ploop, 96.6 0.0012 4.1E-08 65.0 3.8 31 559-589 3-33 (196)
231 1zp6_A Hypothetical protein AT 96.6 0.0013 4.5E-08 64.8 4.1 39 557-595 7-45 (191)
232 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0034 1.2E-07 65.8 7.5 37 559-595 4-43 (260)
233 3lw7_A Adenylate kinase relate 96.6 0.0011 3.7E-08 63.7 3.3 29 561-590 3-31 (179)
234 3ec2_A DNA replication protein 96.6 0.0045 1.5E-07 60.6 7.9 69 67-146 6-79 (180)
235 1aky_A Adenylate kinase; ATP:A 96.5 0.0017 5.7E-08 66.0 4.9 33 558-590 3-35 (220)
236 1e6c_A Shikimate kinase; phosp 96.5 0.0012 4E-08 64.0 3.5 30 561-590 4-33 (173)
237 2ze6_A Isopentenyl transferase 96.5 0.0014 4.6E-08 68.7 4.2 32 561-592 3-34 (253)
238 2iut_A DNA translocase FTSK; n 96.5 0.0081 2.8E-07 69.8 10.9 75 619-704 344-420 (574)
239 3vlf_B 26S protease regulatory 96.5 0.0042 1.5E-07 54.3 6.6 72 336-434 2-73 (88)
240 3cm0_A Adenylate kinase; ATP-b 96.5 0.0015 5E-08 64.2 4.0 31 560-590 5-35 (186)
241 3k1j_A LON protease, ATP-depen 96.5 0.013 4.6E-07 68.9 12.7 140 266-430 200-373 (604)
242 3bh0_A DNAB-like replicative h 96.5 0.027 9.1E-07 60.8 14.1 39 555-593 64-105 (315)
243 3be4_A Adenylate kinase; malar 96.5 0.0014 4.7E-08 66.6 3.6 32 559-590 5-36 (217)
244 3kl4_A SRP54, signal recogniti 96.5 0.015 5E-07 65.7 12.2 73 558-630 96-191 (433)
245 3umf_A Adenylate kinase; rossm 96.4 0.0021 7E-08 66.0 4.8 37 557-595 27-63 (217)
246 1zd8_A GTP:AMP phosphotransfer 96.4 0.0015 5.1E-08 66.8 3.8 33 558-590 6-38 (227)
247 2bwj_A Adenylate kinase 5; pho 96.4 0.0016 5.6E-08 64.4 3.8 32 559-590 12-43 (199)
248 3e1s_A Exodeoxyribonuclease V, 96.4 0.0018 6.2E-08 75.9 4.8 33 560-592 205-240 (574)
249 3t61_A Gluconokinase; PSI-biol 96.4 0.0019 6.5E-08 64.6 4.2 32 559-590 18-49 (202)
250 1qf9_A UMP/CMP kinase, protein 96.4 0.0018 6E-08 63.6 3.8 32 559-590 6-37 (194)
251 2eyu_A Twitching motility prot 96.4 0.0044 1.5E-07 65.2 7.0 72 557-628 23-108 (261)
252 2pt5_A Shikimate kinase, SK; a 96.4 0.0017 5.7E-08 62.7 3.5 30 561-590 2-31 (168)
253 3dl0_A Adenylate kinase; phosp 96.4 0.0016 5.5E-08 65.7 3.5 30 561-590 2-31 (216)
254 3fb4_A Adenylate kinase; psych 96.4 0.0017 5.9E-08 65.5 3.5 30 561-590 2-31 (216)
255 1ukz_A Uridylate kinase; trans 96.4 0.002 6.9E-08 64.3 4.0 33 559-591 15-47 (203)
256 1ly1_A Polynucleotide kinase; 96.3 0.0018 6.2E-08 62.9 3.5 29 560-588 3-32 (181)
257 3tlx_A Adenylate kinase 2; str 96.3 0.0021 7.1E-08 66.8 4.2 33 558-590 28-60 (243)
258 2vli_A Antibiotic resistance p 96.3 0.0017 5.8E-08 63.4 3.3 30 559-588 5-34 (183)
259 2r6a_A DNAB helicase, replicat 96.3 0.011 3.8E-07 67.1 10.3 39 555-593 199-241 (454)
260 1knq_A Gluconate kinase; ALFA/ 96.3 0.003 1E-07 61.5 4.8 32 558-589 7-38 (175)
261 2q6t_A DNAB replication FORK h 96.3 0.024 8.1E-07 64.2 13.0 39 555-593 196-238 (444)
262 2fna_A Conserved hypothetical 96.3 0.0071 2.4E-07 65.0 8.3 95 253-348 124-222 (357)
263 1kht_A Adenylate kinase; phosp 96.3 0.0023 7.8E-08 62.8 4.0 29 560-588 4-37 (192)
264 1ak2_A Adenylate kinase isoenz 96.3 0.003 1E-07 64.8 5.0 32 559-590 16-47 (233)
265 1nlf_A Regulatory protein REPA 96.3 0.012 4.2E-07 61.9 9.9 29 555-583 26-54 (279)
266 2fz4_A DNA repair protein RAD2 96.3 0.017 5.9E-07 59.6 10.7 33 561-593 110-142 (237)
267 3sr0_A Adenylate kinase; phosp 96.3 0.0027 9.1E-08 64.6 4.4 33 561-595 2-34 (206)
268 4eun_A Thermoresistant glucoki 96.2 0.0034 1.2E-07 62.8 4.9 32 558-589 28-59 (200)
269 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0017 5.8E-08 71.3 2.8 53 528-589 2-54 (359)
270 1zak_A Adenylate kinase; ATP:A 96.2 0.0027 9.3E-08 64.5 4.0 31 559-589 5-35 (222)
271 2pez_A Bifunctional 3'-phospho 96.1 0.0049 1.7E-07 60.3 5.2 36 558-593 4-42 (179)
272 2v54_A DTMP kinase, thymidylat 96.1 0.0042 1.4E-07 61.7 4.8 33 559-591 4-37 (204)
273 4gp7_A Metallophosphoesterase; 96.1 0.013 4.5E-07 57.1 8.2 21 558-578 8-28 (171)
274 2pbr_A DTMP kinase, thymidylat 96.1 0.0044 1.5E-07 60.8 4.7 31 561-591 2-35 (195)
275 1e4v_A Adenylate kinase; trans 96.0 0.004 1.4E-07 62.9 4.4 30 561-590 2-31 (214)
276 2ius_A DNA translocase FTSK; n 96.0 0.029 9.9E-07 64.6 12.0 75 620-705 299-375 (512)
277 2ewv_A Twitching motility prot 96.0 0.0059 2E-07 67.6 5.7 72 557-628 134-219 (372)
278 1cke_A CK, MSSA, protein (cyti 96.0 0.0054 1.8E-07 62.1 5.0 30 560-589 6-35 (227)
279 2jaq_A Deoxyguanosine kinase; 96.0 0.0043 1.5E-07 61.4 4.1 29 561-589 2-30 (205)
280 3crm_A TRNA delta(2)-isopenten 95.9 0.0044 1.5E-07 67.3 4.3 34 560-593 6-39 (323)
281 2xb4_A Adenylate kinase; ATP-b 95.9 0.0049 1.7E-07 62.9 4.3 30 561-590 2-31 (223)
282 1nks_A Adenylate kinase; therm 95.9 0.0033 1.1E-07 61.7 2.8 33 561-593 3-38 (194)
283 2if2_A Dephospho-COA kinase; a 95.9 0.0039 1.3E-07 62.2 3.4 30 561-591 3-32 (204)
284 2z0h_A DTMP kinase, thymidylat 95.8 0.0064 2.2E-07 59.9 4.8 30 562-591 3-35 (197)
285 3uie_A Adenylyl-sulfate kinase 95.8 0.006 2.1E-07 61.0 4.5 37 558-594 24-63 (200)
286 1ex7_A Guanylate kinase; subst 95.8 0.0065 2.2E-07 60.7 4.5 25 560-584 2-26 (186)
287 3bgw_A DNAB-like replicative h 95.8 0.062 2.1E-06 60.9 13.2 39 555-593 193-234 (444)
288 2bbw_A Adenylate kinase 4, AK4 95.8 0.006 2E-07 63.1 4.3 30 559-588 27-56 (246)
289 1g5t_A COB(I)alamin adenosyltr 95.8 0.019 6.3E-07 57.9 7.7 113 560-688 29-174 (196)
290 1q57_A DNA primase/helicase; d 95.7 0.059 2E-06 61.8 13.1 39 555-593 238-280 (503)
291 1vt4_I APAF-1 related killer D 95.7 0.024 8.3E-07 70.0 9.6 44 527-582 130-173 (1221)
292 3ake_A Cytidylate kinase; CMP 95.6 0.0075 2.6E-07 60.0 4.4 31 561-591 4-34 (208)
293 3r20_A Cytidylate kinase; stru 95.6 0.0082 2.8E-07 62.2 4.7 31 559-589 9-39 (233)
294 2px0_A Flagellar biosynthesis 95.6 0.047 1.6E-06 58.4 10.8 36 558-593 104-143 (296)
295 3a8t_A Adenylate isopentenyltr 95.6 0.0058 2E-07 66.6 3.5 35 559-593 40-74 (339)
296 3nwj_A ATSK2; P loop, shikimat 95.6 0.0084 2.9E-07 62.7 4.6 33 559-591 48-80 (250)
297 2grj_A Dephospho-COA kinase; T 95.6 0.0064 2.2E-07 61.0 3.5 31 561-591 14-44 (192)
298 1uf9_A TT1252 protein; P-loop, 95.6 0.007 2.4E-07 59.9 3.8 31 559-590 8-38 (203)
299 2wwf_A Thymidilate kinase, put 95.5 0.0038 1.3E-07 62.5 1.7 29 558-586 9-37 (212)
300 1jjv_A Dephospho-COA kinase; P 95.5 0.0071 2.4E-07 60.4 3.7 28 561-589 4-31 (206)
301 2plr_A DTMP kinase, probable t 95.5 0.0085 2.9E-07 59.7 4.0 32 559-590 4-37 (213)
302 1nn5_A Similar to deoxythymidy 95.4 0.0046 1.6E-07 61.9 1.9 27 558-584 8-34 (215)
303 1p9r_A General secretion pathw 95.4 0.048 1.7E-06 61.2 10.4 93 522-628 144-246 (418)
304 2kjq_A DNAA-related protein; s 95.4 0.027 9.1E-07 53.9 7.1 62 267-334 83-147 (149)
305 4e22_A Cytidylate kinase; P-lo 95.4 0.012 4E-07 61.4 5.0 32 558-589 26-57 (252)
306 2yhs_A FTSY, cell division pro 95.4 0.2 6.9E-06 57.3 15.4 27 557-583 291-317 (503)
307 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.011 3.9E-07 64.2 4.9 72 558-629 170-251 (330)
308 1uj2_A Uridine-cytidine kinase 95.4 0.014 4.8E-07 60.6 5.4 39 559-597 22-68 (252)
309 1vht_A Dephospho-COA kinase; s 95.3 0.013 4.5E-07 59.1 4.8 31 559-590 4-34 (218)
310 3b6e_A Interferon-induced heli 95.3 0.052 1.8E-06 53.9 9.1 24 560-583 49-72 (216)
311 2dzn_B 26S protease regulatory 95.3 0.016 5.4E-07 49.8 4.6 68 338-432 1-68 (82)
312 2qor_A Guanylate kinase; phosp 95.2 0.011 3.8E-07 59.2 3.9 28 557-584 10-37 (204)
313 3foz_A TRNA delta(2)-isopenten 95.2 0.013 4.4E-07 63.2 4.5 35 559-593 10-44 (316)
314 2yvu_A Probable adenylyl-sulfa 95.2 0.019 6.5E-07 56.4 5.4 36 558-593 12-50 (186)
315 2qt1_A Nicotinamide riboside k 95.2 0.0094 3.2E-07 59.7 3.2 33 557-589 19-52 (207)
316 1q3t_A Cytidylate kinase; nucl 95.2 0.016 5.5E-07 59.5 5.1 33 557-589 14-46 (236)
317 4a1f_A DNAB helicase, replicat 95.1 0.037 1.3E-06 60.4 8.0 39 555-593 42-83 (338)
318 2qen_A Walker-type ATPase; unk 95.1 0.062 2.1E-06 57.4 9.7 81 267-347 128-215 (350)
319 1w36_D RECD, exodeoxyribonucle 95.0 0.037 1.3E-06 65.3 8.2 24 560-583 165-188 (608)
320 2h92_A Cytidylate kinase; ross 95.0 0.017 5.7E-07 58.3 4.6 31 560-590 4-34 (219)
321 3zvl_A Bifunctional polynucleo 95.0 0.02 6.9E-07 64.2 5.6 32 558-589 257-288 (416)
322 1kgd_A CASK, peripheral plasma 94.9 0.016 5.4E-07 57.0 4.0 26 559-584 5-30 (180)
323 2f6r_A COA synthase, bifunctio 94.9 0.014 4.8E-07 61.9 3.8 31 559-590 75-105 (281)
324 2j41_A Guanylate kinase; GMP, 94.8 0.015 5.1E-07 57.7 3.7 26 558-583 5-30 (207)
325 2gxq_A Heat resistant RNA depe 94.8 0.042 1.5E-06 54.4 7.0 19 560-578 39-57 (207)
326 3d3q_A TRNA delta(2)-isopenten 94.8 0.014 4.9E-07 63.7 3.7 33 560-592 8-40 (340)
327 2j37_W Signal recognition part 94.8 0.098 3.3E-06 60.1 10.8 35 558-592 100-137 (504)
328 1zu4_A FTSY; GTPase, signal re 94.8 0.41 1.4E-05 51.6 15.2 36 557-592 103-141 (320)
329 1m7g_A Adenylylsulfate kinase; 94.8 0.021 7.1E-07 57.5 4.5 37 558-594 24-64 (211)
330 3exa_A TRNA delta(2)-isopenten 94.7 0.016 5.5E-07 62.6 3.8 34 560-593 4-37 (322)
331 2xxa_A Signal recognition part 94.7 0.1 3.4E-06 58.9 10.5 73 557-629 98-194 (433)
332 3fdi_A Uncharacterized protein 94.7 0.019 6.6E-07 57.8 4.1 30 560-589 7-36 (201)
333 3tau_A Guanylate kinase, GMP k 94.7 0.017 5.8E-07 58.2 3.7 27 558-584 7-33 (208)
334 1ltq_A Polynucleotide kinase; 94.7 0.017 5.8E-07 61.3 3.9 31 560-590 3-34 (301)
335 2xau_A PRE-mRNA-splicing facto 94.6 0.072 2.4E-06 64.6 9.6 59 522-582 72-132 (773)
336 2oap_1 GSPE-2, type II secreti 94.6 0.026 9E-07 65.1 5.4 70 559-628 260-343 (511)
337 2bdt_A BH3686; alpha-beta prot 94.6 0.023 7.8E-07 55.9 4.2 25 561-585 4-28 (189)
338 1w4r_A Thymidine kinase; type 94.6 0.028 9.6E-07 56.5 4.9 71 558-630 19-103 (195)
339 1rz3_A Hypothetical protein rb 94.6 0.047 1.6E-06 54.5 6.5 37 558-594 21-60 (201)
340 3tr0_A Guanylate kinase, GMP k 94.6 0.022 7.4E-07 56.5 4.0 27 558-584 6-32 (205)
341 3eph_A TRNA isopentenyltransfe 94.5 0.021 7.2E-07 63.7 4.0 33 559-591 2-34 (409)
342 3asz_A Uridine kinase; cytidin 94.4 0.022 7.6E-07 56.9 3.7 27 558-584 5-31 (211)
343 3llm_A ATP-dependent RNA helic 94.3 0.2 6.8E-06 51.1 10.8 23 559-581 76-98 (235)
344 1lvg_A Guanylate kinase, GMP k 94.3 0.022 7.5E-07 57.0 3.4 27 558-584 3-29 (198)
345 1ny5_A Transcriptional regulat 94.2 0.17 5.7E-06 56.1 10.7 44 104-147 155-201 (387)
346 2qmh_A HPR kinase/phosphorylas 94.0 0.024 8.1E-07 57.3 3.0 33 559-592 34-66 (205)
347 1xx6_A Thymidine kinase; NESG, 94.0 0.11 3.6E-06 52.1 7.8 71 558-630 7-93 (191)
348 2axn_A 6-phosphofructo-2-kinas 93.9 0.076 2.6E-06 61.4 7.4 37 559-595 35-74 (520)
349 2v3c_C SRP54, signal recogniti 93.9 0.083 2.8E-06 59.6 7.5 36 558-593 98-136 (432)
350 4b3f_X DNA-binding protein smu 93.9 0.15 5E-06 60.5 10.0 33 561-593 207-242 (646)
351 2w58_A DNAI, primosome compone 93.9 0.043 1.5E-06 54.4 4.6 89 52-149 6-97 (202)
352 3a00_A Guanylate kinase, GMP k 93.9 0.03 1E-06 55.1 3.4 25 560-584 2-26 (186)
353 1j8m_F SRP54, signal recogniti 93.9 0.18 6.1E-06 53.9 9.7 72 559-630 98-192 (297)
354 3c8u_A Fructokinase; YP_612366 93.9 0.03 1E-06 56.2 3.5 28 557-584 20-47 (208)
355 1cr0_A DNA primase/helicase; R 93.8 0.061 2.1E-06 56.9 5.9 37 556-592 32-72 (296)
356 1jr3_D DNA polymerase III, del 93.8 1.1 3.7E-05 48.3 16.0 79 267-348 76-155 (343)
357 3e70_C DPA, signal recognition 93.8 0.12 4.3E-06 56.0 8.4 27 557-583 127-153 (328)
358 3dzd_A Transcriptional regulat 93.8 0.19 6.6E-06 55.2 10.1 43 105-147 148-192 (368)
359 1tf7_A KAIC; homohexamer, hexa 93.7 0.091 3.1E-06 60.7 7.6 76 556-631 278-384 (525)
360 3gmt_A Adenylate kinase; ssgci 93.6 0.044 1.5E-06 56.5 4.1 30 561-590 10-39 (230)
361 3b9q_A Chloroplast SRP recepto 93.5 0.082 2.8E-06 56.7 6.3 27 557-583 98-124 (302)
362 3hdt_A Putative kinase; struct 93.5 0.047 1.6E-06 56.0 4.0 30 560-589 15-44 (223)
363 3ney_A 55 kDa erythrocyte memb 93.4 0.045 1.5E-06 55.1 3.8 27 558-584 18-44 (197)
364 1ls1_A Signal recognition part 93.4 0.15 5.3E-06 54.3 8.2 73 558-630 97-192 (295)
365 1htw_A HI0065; nucleotide-bind 93.4 0.052 1.8E-06 52.6 4.0 27 557-583 31-57 (158)
366 2ffh_A Protein (FFH); SRP54, s 93.4 0.36 1.2E-05 54.2 11.4 73 558-630 97-192 (425)
367 1znw_A Guanylate kinase, GMP k 93.4 0.048 1.6E-06 54.7 3.9 28 557-584 18-45 (207)
368 1gtv_A TMK, thymidylate kinase 93.3 0.023 7.9E-07 56.7 1.5 24 561-584 2-25 (214)
369 1z6g_A Guanylate kinase; struc 93.3 0.045 1.5E-06 55.6 3.7 27 557-583 21-47 (218)
370 3thx_B DNA mismatch repair pro 93.2 0.25 8.7E-06 60.7 10.6 24 558-581 672-695 (918)
371 1x6v_B Bifunctional 3'-phospho 93.2 0.062 2.1E-06 63.3 5.0 35 559-593 52-89 (630)
372 2og2_A Putative signal recogni 93.1 0.1 3.4E-06 57.5 6.3 27 557-583 155-181 (359)
373 1odf_A YGR205W, hypothetical 3 93.1 0.083 2.8E-06 56.3 5.4 27 558-584 30-56 (290)
374 1c9k_A COBU, adenosylcobinamid 93.1 0.056 1.9E-06 53.6 3.8 32 562-594 2-33 (180)
375 4eaq_A DTMP kinase, thymidylat 93.1 0.061 2.1E-06 55.2 4.2 33 558-590 25-59 (229)
376 2pl3_A Probable ATP-dependent 93.0 0.11 3.8E-06 52.7 6.0 19 559-577 62-80 (236)
377 1s96_A Guanylate kinase, GMP k 92.9 0.06 2.1E-06 55.0 3.8 28 557-584 14-41 (219)
378 2zj8_A DNA helicase, putative 92.9 0.24 8.1E-06 59.3 9.6 35 558-592 38-76 (720)
379 3iuy_A Probable ATP-dependent 92.8 0.19 6.6E-06 50.6 7.5 19 560-578 58-76 (228)
380 2jeo_A Uridine-cytidine kinase 92.8 0.065 2.2E-06 55.2 4.0 29 558-586 24-52 (245)
381 2gza_A Type IV secretion syste 92.8 0.12 4.3E-06 56.6 6.4 71 558-628 174-262 (361)
382 2v9p_A Replication protein E1; 92.5 0.075 2.6E-06 57.1 4.1 31 557-587 124-154 (305)
383 3lxw_A GTPase IMAP family memb 92.5 0.29 1E-05 50.5 8.4 24 559-582 21-44 (247)
384 2ged_A SR-beta, signal recogni 92.4 0.13 4.3E-06 50.1 5.3 26 558-583 47-72 (193)
385 3p32_A Probable GTPase RV1496/ 92.4 0.25 8.5E-06 54.0 8.1 34 558-591 78-114 (355)
386 1a7j_A Phosphoribulokinase; tr 92.3 0.054 1.8E-06 57.8 2.6 37 560-596 6-45 (290)
387 3thx_A DNA mismatch repair pro 92.2 0.44 1.5E-05 58.7 10.8 22 560-581 663-684 (934)
388 3lnc_A Guanylate kinase, GMP k 92.0 0.049 1.7E-06 55.5 1.8 26 558-583 26-52 (231)
389 3lxx_A GTPase IMAP family memb 92.0 0.27 9.3E-06 50.1 7.5 25 559-583 29-53 (239)
390 2va8_A SSO2462, SKI2-type heli 92.0 0.3 1E-05 58.3 9.0 35 558-592 45-83 (715)
391 2j9r_A Thymidine kinase; TK1, 91.9 0.26 8.7E-06 50.2 6.9 33 559-591 28-63 (214)
392 3f8t_A Predicted ATPase involv 91.9 4.2 0.00014 46.2 17.3 40 388-435 447-486 (506)
393 2i3b_A HCR-ntpase, human cance 91.8 0.087 3E-06 52.5 3.3 23 561-583 3-25 (189)
394 1sky_E F1-ATPase, F1-ATP synth 91.8 0.17 5.7E-06 57.5 5.9 24 560-583 152-175 (473)
395 1xjc_A MOBB protein homolog; s 91.7 0.18 6.1E-06 49.5 5.3 33 559-591 4-39 (169)
396 1p5z_B DCK, deoxycytidine kina 91.6 0.053 1.8E-06 56.5 1.6 31 558-588 23-54 (263)
397 3aez_A Pantothenate kinase; tr 91.6 0.11 3.8E-06 56.0 4.1 27 557-583 88-114 (312)
398 3tbk_A RIG-I helicase domain; 91.5 0.9 3.1E-05 51.5 11.9 34 560-593 20-61 (555)
399 1np6_A Molybdopterin-guanine d 91.5 0.12 4E-06 50.9 3.9 26 558-583 5-30 (174)
400 3tqf_A HPR(Ser) kinase; transf 91.5 0.15 5E-06 50.3 4.5 30 558-588 15-44 (181)
401 2ocp_A DGK, deoxyguanosine kin 91.5 0.13 4.6E-06 52.6 4.4 28 560-587 3-31 (241)
402 1m8p_A Sulfate adenylyltransfe 91.4 0.13 4.3E-06 60.2 4.6 37 558-594 395-435 (573)
403 2qm8_A GTPase/ATPase; G protei 91.4 0.35 1.2E-05 52.6 7.8 27 557-583 53-79 (337)
404 3oiy_A Reverse gyrase helicase 91.3 0.27 9.2E-06 54.3 7.0 22 560-581 37-58 (414)
405 3tqc_A Pantothenate kinase; bi 91.3 0.23 8E-06 53.7 6.2 28 557-584 90-117 (321)
406 1sq5_A Pantothenate kinase; P- 91.3 0.12 4.2E-06 55.3 4.0 27 558-584 79-105 (308)
407 1rj9_A FTSY, signal recognitio 91.2 0.12 4.2E-06 55.4 3.9 26 558-583 101-126 (304)
408 2v6i_A RNA helicase; membrane, 91.2 0.25 8.7E-06 55.4 6.7 17 560-576 3-19 (431)
409 1wb9_A DNA mismatch repair pro 91.1 0.65 2.2E-05 56.4 10.5 25 558-582 606-630 (800)
410 4edh_A DTMP kinase, thymidylat 91.0 0.18 6.2E-06 51.1 4.8 32 559-590 6-40 (213)
411 2fwr_A DNA repair protein RAD2 90.9 0.19 6.4E-06 56.7 5.3 34 560-593 109-142 (472)
412 3tif_A Uncharacterized ABC tra 90.9 0.11 3.6E-06 53.7 2.9 27 557-583 29-55 (235)
413 3k53_A Ferrous iron transport 90.8 0.27 9.2E-06 51.3 6.1 24 559-582 3-26 (271)
414 3ice_A Transcription terminati 90.8 0.31 1.1E-05 54.0 6.6 33 558-590 173-210 (422)
415 2cbz_A Multidrug resistance-as 90.6 0.11 3.9E-06 53.5 2.9 27 557-583 29-55 (237)
416 4i1u_A Dephospho-COA kinase; s 90.6 0.15 5E-06 51.9 3.6 31 560-591 10-40 (210)
417 1g8f_A Sulfate adenylyltransfe 90.5 0.22 7.6E-06 57.2 5.5 27 559-585 395-421 (511)
418 2pcj_A ABC transporter, lipopr 90.5 0.1 3.5E-06 53.4 2.3 27 557-583 28-54 (224)
419 3kta_A Chromosome segregation 90.4 0.15 5.2E-06 49.5 3.5 24 561-584 28-51 (182)
420 2wsm_A Hydrogenase expression/ 90.4 0.19 6.5E-06 50.2 4.3 26 559-584 30-55 (221)
421 2onk_A Molybdate/tungstate ABC 90.2 0.14 4.9E-06 52.9 3.2 26 557-583 23-48 (240)
422 2p6r_A Afuhel308 helicase; pro 90.2 0.27 9.1E-06 58.7 6.0 34 559-592 40-76 (702)
423 3tmk_A Thymidylate kinase; pho 90.1 0.3 1E-05 49.8 5.5 30 559-588 5-34 (216)
424 1b0u_A Histidine permease; ABC 90.1 0.13 4.6E-06 53.8 2.9 28 557-584 30-57 (262)
425 2p67_A LAO/AO transport system 90.0 0.66 2.3E-05 50.3 8.5 26 558-583 55-80 (341)
426 2hf9_A Probable hydrogenase ni 89.9 0.32 1.1E-05 48.6 5.5 26 558-583 37-62 (226)
427 3v9p_A DTMP kinase, thymidylat 89.9 0.23 8E-06 50.9 4.5 25 559-583 25-49 (227)
428 1mv5_A LMRA, multidrug resista 89.9 0.14 4.7E-06 53.0 2.8 27 557-583 26-52 (243)
429 2zu0_C Probable ATP-dependent 89.7 0.17 5.8E-06 53.2 3.4 26 557-582 44-69 (267)
430 1oix_A RAS-related protein RAB 89.7 0.17 5.8E-06 49.7 3.1 24 560-583 30-53 (191)
431 2f9l_A RAB11B, member RAS onco 89.7 0.17 5.9E-06 49.8 3.2 23 560-582 6-28 (199)
432 1nrj_B SR-beta, signal recogni 89.6 0.21 7.3E-06 49.6 3.9 26 558-583 11-36 (218)
433 3eiq_A Eukaryotic initiation f 89.6 0.46 1.6E-05 51.9 6.9 22 559-580 77-98 (414)
434 1bif_A 6-phosphofructo-2-kinas 89.6 0.1 3.5E-06 59.3 1.7 33 559-591 39-74 (469)
435 2ghi_A Transport protein; mult 89.6 0.16 5.3E-06 53.3 2.9 27 557-583 44-70 (260)
436 2olj_A Amino acid ABC transpor 89.4 0.16 5.5E-06 53.3 2.9 28 557-584 48-75 (263)
437 2ixe_A Antigen peptide transpo 89.4 0.16 5.5E-06 53.5 2.9 28 557-584 43-70 (271)
438 2d2e_A SUFC protein; ABC-ATPas 89.4 0.16 5.6E-06 52.7 2.9 26 557-582 27-52 (250)
439 3fvq_A Fe(3+) IONS import ATP- 89.4 0.18 6.3E-06 55.3 3.4 27 557-583 28-54 (359)
440 2gk6_A Regulator of nonsense t 89.3 0.29 9.9E-06 57.7 5.3 23 561-583 197-219 (624)
441 2dyk_A GTP-binding protein; GT 89.3 0.21 7E-06 46.7 3.3 24 560-583 2-25 (161)
442 1g6h_A High-affinity branched- 89.3 0.14 4.9E-06 53.4 2.4 28 557-584 31-58 (257)
443 1sgw_A Putative ABC transporte 89.3 0.14 4.6E-06 52.2 2.2 27 557-583 33-59 (214)
444 2f1r_A Molybdopterin-guanine d 89.3 0.14 4.9E-06 50.1 2.2 24 560-583 3-26 (171)
445 3ly5_A ATP-dependent RNA helic 89.3 0.5 1.7E-05 49.0 6.5 20 560-579 92-111 (262)
446 3vkw_A Replicase large subunit 89.2 0.31 1.1E-05 55.0 5.2 25 558-582 160-184 (446)
447 3l9o_A ATP-dependent RNA helic 89.2 0.64 2.2E-05 58.5 8.6 33 560-592 200-235 (1108)
448 2pze_A Cystic fibrosis transme 89.2 0.15 5E-06 52.3 2.4 27 557-583 32-58 (229)
449 2gks_A Bifunctional SAT/APS ki 89.2 0.51 1.7E-05 54.7 7.2 37 559-595 372-411 (546)
450 2ff7_A Alpha-hemolysin translo 89.2 0.15 5.1E-06 53.0 2.4 27 557-583 33-59 (247)
451 2qgz_A Helicase loader, putati 89.2 0.25 8.5E-06 53.0 4.2 79 60-149 113-196 (308)
452 1ji0_A ABC transporter; ATP bi 89.1 0.15 5.2E-06 52.6 2.4 28 557-584 30-57 (240)
453 1vpl_A ABC transporter, ATP-bi 89.1 0.18 6E-06 52.8 2.9 27 557-583 39-65 (256)
454 4ag6_A VIRB4 ATPase, type IV s 89.1 0.36 1.2E-05 53.2 5.6 35 558-592 34-71 (392)
455 2yz2_A Putative ABC transporte 89.0 0.18 6.1E-06 52.9 2.9 27 557-583 31-57 (266)
456 3gfo_A Cobalt import ATP-bindi 89.0 0.15 5.2E-06 53.9 2.4 27 557-583 32-58 (275)
457 3b85_A Phosphate starvation-in 89.0 0.15 5E-06 51.6 2.1 24 559-582 22-45 (208)
458 3cr8_A Sulfate adenylyltranfer 88.9 0.17 5.8E-06 58.8 2.8 38 558-595 368-409 (552)
459 1lw7_A Transcriptional regulat 88.9 0.23 7.7E-06 54.4 3.7 28 559-586 170-197 (365)
460 3sop_A Neuronal-specific septi 88.9 0.22 7.5E-06 52.4 3.5 23 561-583 4-26 (270)
461 2qi9_C Vitamin B12 import ATP- 88.8 0.16 5.6E-06 52.8 2.4 28 557-584 24-51 (249)
462 4g1u_C Hemin import ATP-bindin 88.8 0.16 5.5E-06 53.3 2.3 27 557-583 35-61 (266)
463 1z2a_A RAS-related protein RAB 88.7 0.23 7.8E-06 46.6 3.2 24 560-583 6-29 (168)
464 1upt_A ARL1, ADP-ribosylation 88.7 0.29 1E-05 46.1 4.0 26 557-582 5-30 (171)
465 3iby_A Ferrous iron transport 88.7 0.54 1.9E-05 48.9 6.3 23 560-582 2-24 (256)
466 2yyz_A Sugar ABC transporter, 88.7 0.22 7.6E-06 54.7 3.4 27 557-583 27-53 (359)
467 2it1_A 362AA long hypothetical 88.6 0.22 7.6E-06 54.7 3.4 27 557-583 27-53 (362)
468 2p5s_A RAS and EF-hand domain 88.6 0.25 8.6E-06 48.5 3.5 26 557-582 26-51 (199)
469 2ce2_X GTPase HRAS; signaling 88.6 0.24 8.2E-06 46.1 3.2 23 561-583 5-27 (166)
470 3rlf_A Maltose/maltodextrin im 88.5 0.23 7.8E-06 55.0 3.4 27 557-583 27-53 (381)
471 2wji_A Ferrous iron transport 88.4 0.23 7.9E-06 47.2 3.0 23 560-582 4-26 (165)
472 1kao_A RAP2A; GTP-binding prot 88.4 0.25 8.4E-06 46.2 3.2 24 560-583 4-27 (167)
473 2ihy_A ABC transporter, ATP-bi 88.4 0.18 6E-06 53.5 2.4 28 557-584 45-72 (279)
474 3d31_A Sulfate/molybdate ABC t 88.4 0.2 6.7E-06 54.9 2.8 27 557-583 24-50 (348)
475 2zej_A Dardarin, leucine-rich 88.4 0.19 6.6E-06 48.7 2.5 21 561-581 4-24 (184)
476 1wp9_A ATP-dependent RNA helic 88.4 1 3.5E-05 49.6 8.7 33 561-593 25-61 (494)
477 1v43_A Sugar-binding transport 88.4 0.24 8E-06 54.8 3.4 27 557-583 35-61 (372)
478 1u8z_A RAS-related protein RAL 88.3 0.25 8.6E-06 46.1 3.1 24 560-583 5-28 (168)
479 1z47_A CYSA, putative ABC-tran 88.3 0.21 7.2E-06 54.8 2.9 26 558-583 40-65 (355)
480 2nq2_C Hypothetical ABC transp 88.3 0.18 6.2E-06 52.5 2.3 27 557-583 29-55 (253)
481 4f4c_A Multidrug resistance pr 88.2 1 3.5E-05 57.7 9.6 28 557-584 442-469 (1321)
482 2nzj_A GTP-binding protein REM 88.1 0.25 8.4E-06 46.8 3.0 23 560-582 5-27 (175)
483 3lv8_A DTMP kinase, thymidylat 88.1 0.31 1E-05 50.4 3.9 25 559-583 27-51 (236)
484 1ek0_A Protein (GTP-binding pr 88.0 0.29 9.8E-06 45.9 3.4 24 560-583 4-27 (170)
485 3trf_A Shikimate kinase, SK; a 87.9 0.21 7.3E-06 48.4 2.5 34 109-142 5-38 (185)
486 1ewq_A DNA mismatch repair pro 87.9 0.67 2.3E-05 55.9 7.2 24 559-582 576-599 (765)
487 1ky3_A GTP-binding protein YPT 87.8 0.27 9.3E-06 46.7 3.1 26 558-583 7-32 (182)
488 1g16_A RAS-related protein SEC 87.8 0.28 9.7E-06 46.0 3.2 23 560-582 4-26 (170)
489 1z0j_A RAB-22, RAS-related pro 87.8 0.28 9.7E-06 46.0 3.2 24 560-583 7-30 (170)
490 1g29_1 MALK, maltose transport 87.7 0.24 8.1E-06 54.8 2.9 26 558-583 28-53 (372)
491 2lkc_A Translation initiation 87.7 0.35 1.2E-05 45.9 3.8 24 558-581 7-30 (178)
492 3def_A T7I23.11 protein; chlor 87.7 2.1 7.3E-05 44.2 10.1 25 559-583 36-60 (262)
493 2gj8_A MNME, tRNA modification 87.6 0.3 1E-05 46.9 3.3 24 559-582 4-27 (172)
494 1wms_A RAB-9, RAB9, RAS-relate 87.6 0.31 1.1E-05 46.3 3.4 23 560-582 8-30 (177)
495 1qhx_A CPT, protein (chloramph 87.5 0.24 8.4E-06 47.6 2.6 36 110-145 4-39 (178)
496 3ld9_A DTMP kinase, thymidylat 87.5 0.36 1.2E-05 49.4 4.0 27 559-585 21-47 (223)
497 3gd7_A Fusion complex of cysti 87.5 0.28 9.7E-06 54.5 3.4 27 557-583 45-71 (390)
498 1z08_A RAS-related protein RAB 87.5 0.3 1E-05 46.0 3.2 23 560-582 7-29 (170)
499 3q85_A GTP-binding protein REM 87.5 0.29 9.9E-06 46.1 3.0 21 561-581 4-24 (169)
500 3a1s_A Iron(II) transport prot 87.4 0.67 2.3E-05 48.2 6.1 22 560-581 6-27 (258)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.2e-67 Score=630.92 Aligned_cols=538 Identities=26% Similarity=0.439 Sum_probs=382.0
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 66 IKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 66 ~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
-+|+|+++.++ ++.|..|.+.+..+|+|+++.+.. =...+++|||+||+++++++||||+|++.|++|+.++.+++
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~--g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSC--CCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHHHhhc--CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 46999999999 999999999999999999984332 23578999999999999999999999999999999999888
Q ss_pred chhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcc
Q 003231 146 SLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMS 225 (837)
Q Consensus 146 ~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (837)
..+|
T Consensus 275 ~sk~---------------------------------------------------------------------------- 278 (806)
T 3cf2_A 275 MSKL---------------------------------------------------------------------------- 278 (806)
T ss_dssp HSSC----------------------------------------------------------------------------
T ss_pred hccc----------------------------------------------------------------------------
Confidence 6433
Q ss_pred cccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHHhc
Q 003231 226 SISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLKKL 297 (837)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~~l 297 (837)
.++....+..+|+.+.. .+|+||||||||.+...+ .+..+.|...++.+
T Consensus 279 --------------------~gese~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~ 335 (806)
T 3cf2_A 279 --------------------AGESESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp --------------------TTHHHHHHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC
T ss_pred --------------------chHHHHHHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc
Confidence 22233356667777655 499999999999976432 22334444444332
Q ss_pred --cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCC
Q 003231 298 --SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDL 373 (837)
Q Consensus 298 --~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~ 373 (837)
.++|+|||+ +|++..+|++|.| ||...|+|++|+.++|.+||+.++.. .....++
T Consensus 336 ~~~~~V~VIaa-----TN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~----------------~~~~~dv 394 (806)
T 3cf2_A 336 KQRAHVIVMAA-----TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN----------------MKLADDV 394 (806)
T ss_dssp CGGGCEEEEEE-----CSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS----------------SEECTTC
T ss_pred cccCCEEEEEe-----cCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC----------------CCCCccc
Confidence 258999998 8999999999999 99999999999999999999986521 1224568
Q ss_pred ChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCC------cccc---CCceeecHHhHHHHHHHhhhhhhccccccc
Q 003231 374 ECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNED------PEYR---NGKLVISSKSLSHGLSIFQECKRFGKDSLK 444 (837)
Q Consensus 374 ~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~------~~~~---~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 444 (837)
+...|+..+.+ |++++|..++..|+.+++.+..+ .... .+.+.|+++||..|+..+++..
T Consensus 395 dl~~lA~~T~G---fsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~-------- 463 (806)
T 3cf2_A 395 DLEQVANETHG---HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA-------- 463 (806)
T ss_dssp CHHHHHHHCCS---CCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC--------
T ss_pred CHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc--------
Confidence 88899999999 99999999999888777654311 1000 1356789999999887221100
Q ss_pred cccccccccccchhhhhhhccCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccc
Q 003231 445 METNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTF 524 (837)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~f 524 (837)
++. .....+.++|
T Consensus 464 -----------------------------------------------------------------~r~--~~~~~p~v~w 476 (806)
T 3cf2_A 464 -----------------------------------------------------------------LRE--TVVEVPQVTW 476 (806)
T ss_dssp -----------------------------------------------------------------CCC--CCCBCCCCCS
T ss_pred -----------------------------------------------------------------ccc--ccccCCCCCH
Confidence 000 0111235789
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccH
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDE 604 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e 604 (837)
++|+|++++++.|++.+.+|+++|+.|...+.++++++|||||||||||++|+++|.+++.+|+.++++++.++|+|+++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese 556 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHH
Q 003231 605 KNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAII 682 (837)
Q Consensus 605 ~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~ 682 (837)
+.++.+|..|+..+||||||||||.+++.|... ..+...++++++|+.+||++... .+|+||+|||+|+.||++++
T Consensus 557 ~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~All 634 (806)
T 3cf2_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAIL 634 (806)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHH
T ss_pred HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHc
Confidence 999999999999999999999999999888543 34556789999999999998544 45999999999999999999
Q ss_pred H--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 003231 683 R--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKK 759 (837)
Q Consensus 683 r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~ 759 (837)
| ||++.|+|++|+.++|.+||+.++++.++ .+++++.||+.|+||||+||.++|++|++.|+++.++.........
T Consensus 635 RpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~- 713 (806)
T 3cf2_A 635 RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERER- 713 (806)
T ss_dssp STTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC----------
T ss_pred CCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-
Confidence 9 99999999999999999999999998887 7899999999999999999999999999999998765432111100
Q ss_pred HHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhh
Q 003231 760 KREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLY 822 (837)
Q Consensus 760 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~dig 822 (837)
....... ........++|+++||.+|+++++||++.+. ...+..|.+.+
T Consensus 714 ------~~~~~~~------~~~~~~~~~~i~~~df~~al~~~~pSvs~~~--l~~y~~~~~~f 762 (806)
T 3cf2_A 714 ------QTNPSAM------EVEEDDPVPEIRRDHFEEAMRFARRSVSDND--IRKYEMFAQTL 762 (806)
T ss_dssp --------------------------CCC----CCTTTC-----------------CCCC---
T ss_pred ------ccCcccc------ccccccccCccCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHH
Confidence 0000000 0111234578999999999999999998542 33444454444
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=5e-47 Score=462.13 Aligned_cols=539 Identities=26% Similarity=0.432 Sum_probs=383.3
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 66 IKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 66 ~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
-.|+|+++.++ +..+..|.+.+..+++++++.+.. -...+++|||+||+++++++||||||+..+..++.++..++
T Consensus 199 ~~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l--~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l 274 (806)
T 1ypw_A 199 NEVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp SSCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSS--CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHH
T ss_pred CCCCHHHhCCh--HHHHHHHHHHHHHHhhCHHHHHhc--CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHh
Confidence 35899999998 999999999999999999874332 13567889999999999999999999999999998887666
Q ss_pred chhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcc
Q 003231 146 SLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMS 225 (837)
Q Consensus 146 ~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (837)
..++
T Consensus 275 ~~~~---------------------------------------------------------------------------- 278 (806)
T 1ypw_A 275 MSKL---------------------------------------------------------------------------- 278 (806)
T ss_dssp SSSS----------------------------------------------------------------------------
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 4211
Q ss_pred cccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHHhc
Q 003231 226 SISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLKKL 297 (837)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~~l 297 (837)
.++..-.+..+|+-+..- .|.||||||+|.++..+ .+..+.|..++..+
T Consensus 279 --------------------~g~~~~~l~~vf~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~ 335 (806)
T 1ypw_A 279 --------------------AGESESNLRKAFEEAEKN---APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHH---CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS
T ss_pred --------------------hhhHHHHHHHHHHHHHhc---CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhh
Confidence 000111344455555543 89999999999976432 12333343444422
Q ss_pred --cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCC
Q 003231 298 --SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDL 373 (837)
Q Consensus 298 --~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~ 373 (837)
..+|++|++ +|++..+|+++.| ||...|.+.+|+.++|+.||+.++.+ +....+.
T Consensus 336 ~~~~~v~vI~a-----tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~----------------~~l~~~~ 394 (806)
T 1ypw_A 336 KQRAHVIVMAA-----TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN----------------MKLADDV 394 (806)
T ss_dssp CTTSCCEEEEE-----CSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT----------------SCCCTTC
T ss_pred cccccEEEecc-----cCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc----------------CCCcccc
Confidence 247888887 6777889999998 99999999999999999999975321 1122345
Q ss_pred ChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCcc-cc--------CCceeecHHhHHHHHHHhhhhhhccccccc
Q 003231 374 ECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPE-YR--------NGKLVISSKSLSHGLSIFQECKRFGKDSLK 444 (837)
Q Consensus 374 ~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~-~~--------~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 444 (837)
+...+...+.. +++..+..++..|...++.+..... .. ...+.++.+++..++...++
T Consensus 395 ~l~~la~~t~g---~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~---------- 461 (806)
T 1ypw_A 395 DLEQVANETHG---HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP---------- 461 (806)
T ss_dssp CTHHHHHSCSS---CCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCC----------
T ss_pred hhHHHHHhhcC---cchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCc----------
Confidence 66777777777 8888888887777666654432110 00 01223444444444431100
Q ss_pred cccccccccccchhhhhhhccCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccc
Q 003231 445 METNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTF 524 (837)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~f 524 (837)
.. .+. .....+.++|
T Consensus 462 ------------------------------------------------s~---------------~~~--~~~~~~~v~~ 476 (806)
T 1ypw_A 462 ------------------------------------------------SA---------------LRE--TVVEVPQVTW 476 (806)
T ss_dssp ------------------------------------------------CC---------------CCC--CCCCCCCCSS
T ss_pred ------------------------------------------------hh---------------hhh--hcccCccccc
Confidence 00 000 0011235689
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccH
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDE 604 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e 604 (837)
++++|++++++.|.+++..++.+++.|...+..++.++||+||||||||++|+++|.+++.+|+.++++++.++|+|+.+
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~ 556 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSS
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccH
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHH
Q 003231 605 KNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAII 682 (837)
Q Consensus 605 ~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~ 682 (837)
..++.+|..++...|+||||||||.+++.+... .......+++++|+..|++.... .+++||+|||+++.+|++++
T Consensus 557 ~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~all 634 (806)
T 1ypw_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAIL 634 (806)
T ss_dssp HHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTS
T ss_pred HHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc--CCeEEEEecCCcccCCHHHh
Confidence 999999999999999999999999998877543 23456789999999999987443 46999999999999999999
Q ss_pred H--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 003231 683 R--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKK 759 (837)
Q Consensus 683 r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~ 759 (837)
| ||+..|+|+.|+.++|..||+.++++..+ .++++..|+..+.||+++||.++|++|+..|+++.++..........
T Consensus 635 rpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~ 714 (806)
T 1ypw_A 635 RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714 (806)
T ss_dssp SGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------
T ss_pred CccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 9 99999999999999999999999988777 78889999999999999999999999999999986543221110000
Q ss_pred HHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhc
Q 003231 760 KREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYG 823 (837)
Q Consensus 760 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG 823 (837)
...... ........++++++||..|++.++|+++.+ ....+..|.+.++
T Consensus 715 -------~~~~~~------~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 715 -------TNPSAM------EVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTLQ 763 (806)
T ss_dssp -------------------------CCTTTTTTSSCCCCCC-----------------------
T ss_pred -------cccccc------ccccccccCccCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHHH
Confidence 000000 001123457899999999999999998754 3556677776543
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-44 Score=397.52 Aligned_cols=248 Identities=33% Similarity=0.558 Sum_probs=228.6
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.|.++|+||+|++++|+.|++++.+|+++|++|...+.+|++|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 35789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
|+|+++..++.+|..|+..+||||||||||.+++.|... +......+++++|+..||++... .+|+||+|||+|+.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLDI 299 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChhh
Confidence 999999999999999999999999999999999877543 23446678899999999998543 45999999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
|||+++| ||++.|+|+.|+.++|.+||+.++++.++ .+++++.||..|+||||+||.++|++|++.|+++.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~------ 373 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER------ 373 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT------
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999999 99999999999999999999999999887 78999999999999999999999999999998741
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccc
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFA 806 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~ 806 (837)
...++++||..|++++.+...
T Consensus 374 --------------------------------~~~vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 374 --------------------------------RIHVTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp --------------------------------CSBCCHHHHHHHHHHHHHHHT
T ss_pred --------------------------------CCCcCHHHHHHHHHHHhCccc
Confidence 136899999999999987653
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-42 Score=392.54 Aligned_cols=260 Identities=33% Similarity=0.556 Sum_probs=229.2
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.|.++|+||+|++++|+.|++.+.+|+.+|+.|...+++|++|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
|+|+++..++.+|..|+..+||||||||+|.+++.|... +......+++++++..|++.... .+|+||+|||+|+.
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPNT 360 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTTS
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCccc
Confidence 999999999999999999999999999999999887543 33456677889999999987543 45999999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
||++++| ||++.|+|+.|+.++|.+||+.++++..+ .+++++.||..|+||||+||.++|++|++.|+++.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~------ 434 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------ 434 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT------
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999999 99999999999999999999999999887 78999999999999999999999999999998751
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHH
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWN 819 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~ 819 (837)
...++++||..|++++.+...+-. ....+.+||
T Consensus 435 --------------------------------~~~it~~Df~~Al~kV~~g~~k~s-~~~~y~~~n 467 (467)
T 4b4t_H 435 --------------------------------RKVATEKDFLKAVDKVISGYKKFS-STSRYMQYN 467 (467)
T ss_dssp --------------------------------CSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred --------------------------------CCccCHHHHHHHHHHHhcCcccch-hHHHHHhhC
Confidence 135899999999999988776432 234566775
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-43 Score=391.14 Aligned_cols=251 Identities=32% Similarity=0.579 Sum_probs=229.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 003231 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS 597 (837)
Q Consensus 518 ~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s 597 (837)
..+.++|+||+|++++|+.|++.+.+|+.+|+.|...+.++++|+|||||||||||++|+++|.+++.+|+.++++++.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc--hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC
Q 003231 598 KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG--EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF 675 (837)
Q Consensus 598 ~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~ 675 (837)
+|+|+++..++.+|..|+..+||||||||+|.+++.|.... ......+++++|+..||+.... .+++||+|||+|+
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCChh
Confidence 99999999999999999999999999999999998875432 2345667888999999987543 4599999999999
Q ss_pred CCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 003231 676 DLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEER 752 (837)
Q Consensus 676 ~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~ 752 (837)
.|||+++| ||++.|+|+.|+.++|.+||+.++++..+ .+++++.||..|+||||+||.++|++|++.|+++.
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~----- 407 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER----- 407 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999999 99999999999999999999999999887 78899999999999999999999999999998741
Q ss_pred hHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccccc
Q 003231 753 KKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASE 808 (837)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~ 808 (837)
...++++||..|++++.++...+
T Consensus 408 ---------------------------------~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 408 ---------------------------------RMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp ---------------------------------CSCBCHHHHHHHHHHHHHHHCCC
T ss_pred ---------------------------------CCccCHHHHHHHHHHHhCCCChh
Confidence 13589999999999999887643
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-42 Score=392.07 Aligned_cols=250 Identities=34% Similarity=0.574 Sum_probs=229.5
Q ss_pred CCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 003231 518 NEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS 597 (837)
Q Consensus 518 ~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s 597 (837)
..+.++|+||+|++++|+.|.+.+.+|+.+|+.|...+.++++|+|||||||||||++|+++|.+++.+|+.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc--hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC
Q 003231 598 KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG--EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF 675 (837)
Q Consensus 598 ~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~ 675 (837)
+|+|+++..++.+|..|+..+||||||||+|.+++.|.... ......+++++|+..||+.... .+|+||||||+|+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRVD 331 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCch
Confidence 99999999999999999999999999999999998886543 2345667889999999998543 4599999999999
Q ss_pred CCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 003231 676 DLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEER 752 (837)
Q Consensus 676 ~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~ 752 (837)
.|||+++| ||++.|+|+.|+.++|.+||+.++++..+ .+++++.||..|+||||+||.++|++|++.|+++.
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~----- 406 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG----- 406 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999887 78999999999999999999999999999998741
Q ss_pred hHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccc
Q 003231 753 KKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFAS 807 (837)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~ 807 (837)
..+++++||..|+++++|+..+
T Consensus 407 ---------------------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 ---------------------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp ---------------------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred ---------------------------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 1468999999999999887554
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-42 Score=389.26 Aligned_cols=250 Identities=37% Similarity=0.628 Sum_probs=228.0
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|+||+|++++++.|++.+.+|+.+|++|...+.+|++|+|||||||||||++|+++|.+++++|+.++++++.++
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc--hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG--EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
|+|+++..++.+|..|+..+||||||||+|.+++.|...+ ......+++++|+..||+.... .+++||+|||+|+.
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPDT 332 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTTS
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCchh
Confidence 9999999999999999999999999999999998875432 3345677889999999998543 45999999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
|||+++| ||++.|+|+.|+.++|.+||+.++++... .++|++.||..|+||||+||.++|++|++.|+++.
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~------ 406 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD------ 406 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT------
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999998 69999999999999999999999998877 78999999999999999999999999999998741
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccccc
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASE 808 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~ 808 (837)
...|+++||..|++++.++...+
T Consensus 407 --------------------------------~~~i~~~d~~~Al~~v~~~~k~e 429 (437)
T 4b4t_L 407 --------------------------------RDHINPDDLMKAVRKVAEVKKLE 429 (437)
T ss_dssp --------------------------------CSSBCHHHHHHHHHHHHHTCC--
T ss_pred --------------------------------CCCCCHHHHHHHHHHHHhccCcc
Confidence 13689999999999999876544
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-41 Score=378.37 Aligned_cols=247 Identities=36% Similarity=0.570 Sum_probs=224.7
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|+||+|++++|+.|.+.+.+|+.+|+.|...+..+++|+|||||||||||++|+++|++++++|+.++++++.++
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 35689999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
|+|+++..++.+|..|+..+||||||||+|.+++.|... .......+++++|+..||++... .+++||+|||+|+.
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRADT 323 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSSS
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChhh
Confidence 999999999999999999999999999999999887442 23345678899999999998554 35999999999999
Q ss_pred CcHHHHH--HHHHhhhcC-CCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 003231 677 LDEAIIR--RFERRIMVG-LPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEER 752 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~-~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~ 752 (837)
|||+++| ||+..|+|| +|+.++|..||+.++++..+ .+++++.||..|+||||+||.++|++|++.|+++.
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~----- 398 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN----- 398 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----
Confidence 9999999 999999996 89999999999999999887 78999999999999999999999999999998741
Q ss_pred hHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHh-hhcc
Q 003231 753 KKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQV-AASF 805 (837)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v-~ps~ 805 (837)
...++++||..|+.++ +++.
T Consensus 399 ---------------------------------~~~i~~~d~~~A~~~~~~~~~ 419 (428)
T 4b4t_K 399 ---------------------------------RYVILQSDLEEAYATQVKTDN 419 (428)
T ss_dssp ---------------------------------CSSBCHHHHHHHHHHHSCSCC
T ss_pred ---------------------------------CCCCCHHHHHHHHHHhhCccC
Confidence 1358999999999764 4443
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.9e-42 Score=411.93 Aligned_cols=287 Identities=38% Similarity=0.604 Sum_probs=257.4
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW 599 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~ 599 (837)
+.++|+||+|++++++.|++++.+|+++|++|...+.+|++|||||||||||||+||+++|++++.+|+.++++++.++|
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcH
Q 003231 600 FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDE 679 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~ 679 (837)
.|+++..++.+|..|++++||||||||||.+++.+... ..+..++++++|+..|+++... .+|+||+|||+++.+|+
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~-~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC-CCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSCT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC-CChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcCH
Confidence 99999999999999999999999999999999887654 3345678999999999998654 35999999999999999
Q ss_pred HHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 003231 680 AIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDM 756 (837)
Q Consensus 680 aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~ 756 (837)
+++| ||++.|+++.|+.++|.+||+.++++..+ .++++..||..|+||+|+||.+||++|++.|+++........+.
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~ 435 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCC
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999 99999999999999999999999988777 78999999999999999999999999999999987654322110
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCCCcccc
Q 003231 757 EKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKK 830 (837)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~~~r~~ 830 (837)
.. .........++++||..|+..++|+..++.....|.++|+|++|++.+|++
T Consensus 436 ------------~~---------~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~ 488 (806)
T 3cf2_A 436 ------------TI---------DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp ------------CC---------SHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH
T ss_pred ------------cc---------chhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHH
Confidence 00 001122356899999999999999999999999999999999999988876
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=339.23 Aligned_cols=303 Identities=39% Similarity=0.640 Sum_probs=245.1
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-GASFINVSMSTITS 597 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-g~~~i~v~~s~l~s 597 (837)
.+.++|+||+|++++++.|++.+..|++++++|.+. ..|++++||+||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 356899999999999999999999999999999853 5788999999999999999999999999 89999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCC
Q 003231 598 KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDL 677 (837)
Q Consensus 598 ~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~L 677 (837)
+|.|..+..++.+|..++...|+||||||||.+.+.+... ......++.++|+..+++... ...+++||+|||+++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999998877553 445677889999999998743 23569999999999999
Q ss_pred cHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 003231 678 DEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKD 755 (837)
Q Consensus 678 d~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~ 755 (837)
+++++|||+..++++.|+.++|..|++.++...+. ++.++..|+..+.||+|+||.++|++|++.|+++.........
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999987754 7899999999999999999999999999999998754211000
Q ss_pred HHHHHHHH-------Hhhcc----cchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcC
Q 003231 756 MEKKKREE-------AAKSS----EDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGE 824 (837)
Q Consensus 756 ~~~~~~~~-------~~~~~----~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~ 824 (837)
........ ..... ....+.............++|+++||..|+++++||++.+ -...+..|++.||.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTTCS
T ss_pred hccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHHcc
Confidence 00000000 00000 0000000000011123346899999999999999999865 36778899999997
Q ss_pred CC
Q 003231 825 GG 826 (837)
Q Consensus 825 ~~ 826 (837)
+|
T Consensus 321 ~~ 322 (322)
T 1xwi_A 321 EG 322 (322)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.7e-37 Score=340.32 Aligned_cols=304 Identities=38% Similarity=0.632 Sum_probs=240.9
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|++|+|++++++.|.+++..|+.+++.|... ..+++++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN-RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT-CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 346799999999999999999999999999999874 4778999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCc
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLD 678 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld 678 (837)
++|..+..++.+|..++...|+||||||||.+.+.+... .....+++.++++..+++... ...+++||+|||.++.++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGT-SCCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC-cchHHHHHHHHHHHHhccccc-cCCceEEEEecCChhhCC
Confidence 999999999999999999999999999999998766432 334556888999999998743 345699999999999999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 003231 679 EAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDM 756 (837)
Q Consensus 679 ~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~ 756 (837)
+++++||+..++++.|+.++|.+|++.++..... ++.++..|+..+.||+++||.++|++|++.++++..........
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9999999999999999999999999999988764 78899999999999999999999999999999997654322111
Q ss_pred HHHHHHHHh-hcc-c---chhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCCCc
Q 003231 757 EKKKREEAA-KSS-E---DASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGS 827 (837)
Q Consensus 757 ~~~~~~~~~-~~~-~---~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~~~ 827 (837)
......... ... + ...+.............++|+++||..|++.++||++.+ ....+.+|++.||.+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~~~~ 322 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQEGN 322 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTT--HHHHHHHHHHHHC----
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhcCCCC
Confidence 000000000 000 0 000000000001122347899999999999999999875 36778999999998763
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2e-36 Score=336.48 Aligned_cols=308 Identities=38% Similarity=0.628 Sum_probs=234.7
Q ss_pred ccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 514 VIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 514 ~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
.+....+.++|++|+|++++++.|.+++..|+.++++|.. +..+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 3444556789999999999999999999999999999987 457889999999999999999999999999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC
Q 003231 594 TITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR 673 (837)
Q Consensus 594 ~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~ 673 (837)
++.+.++|..+..++.+|..++...|+||||||||.+.+.+... .....+++.++|+..+++... ...+++||+|||.
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~-~~~~~~~~~~~ll~~l~~~~~-~~~~v~vI~atn~ 196 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNI 196 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESC
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC-cchHHHHHHHHHHHHhhcccc-cCCCeEEEeecCC
Confidence 99999999999999999999999999999999999998766442 445667888999999988743 2346999999999
Q ss_pred CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003231 674 PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEE 751 (837)
Q Consensus 674 ~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~ 751 (837)
++.++++++|||+..++++.|+.++|..|++.++...+. ++.++..|+..+.||+|+||.++|++|++.|+++.....
T Consensus 197 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 197 PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988763 789999999999999999999999999999999865321
Q ss_pred hhHhHHHHHHHHHhhcccch-h-----hhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCC
Q 003231 752 RKKDMEKKKREEAAKSSEDA-S-----ETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEG 825 (837)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~-~-----~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~ 825 (837)
........... .....+.. . +.............++|+++||..|+++++||++.+ ....+..|++.||.+
T Consensus 277 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~--~~~~~~~~~~~~~~~ 353 (355)
T 2qp9_X 277 HFKDVSTEDDE-TRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQE 353 (355)
T ss_dssp EEEECCC------CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHH--HHHHHHHHHHHTC--
T ss_pred hhhhhcccccc-ccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhccC
Confidence 10000000000 00000000 0 000000011223457899999999999999999865 367789999999987
Q ss_pred Cc
Q 003231 826 GS 827 (837)
Q Consensus 826 ~~ 827 (837)
|+
T Consensus 354 ~~ 355 (355)
T 2qp9_X 354 GN 355 (355)
T ss_dssp --
T ss_pred CC
Confidence 64
No 13
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=4.5e-35 Score=356.01 Aligned_cols=390 Identities=15% Similarity=0.206 Sum_probs=286.8
Q ss_pred HHHHHHHHHhhcCCcEEEEEccchhHhh------hcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC
Q 003231 254 QSLYKVLVSITETSSVILYLRDVDKLLF------QSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP 327 (837)
Q Consensus 254 ~~L~~v~~~~~~~~p~Ilfi~di~~~l~------~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~ 327 (837)
+.+..++..+.+.++.||||||+|.++. +..++.++|++++++ |++.|||+++..++.+...+|++|.+||+
T Consensus 265 ~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~ 342 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEE
T ss_pred HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCce
Confidence 3456666666667899999999999652 356788999999986 89999999999988888999999999997
Q ss_pred ceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhc
Q 003231 328 YNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMD 407 (837)
Q Consensus 328 ~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~ 407 (837)
.|.|.+|+.+++..||+.++.++...+.+....+.+. .+..++..++.|+++|++.|+.+++++....+..
T Consensus 343 -~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~--------~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~ 413 (758)
T 1r6b_X 343 -KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVR--------AAVELAVKYINDRHLPDKAIDVIDEAGARARLMP 413 (758)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHH--------HHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSS
T ss_pred -EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH--------HHHHHhhhhcccccCchHHHHHHHHHHHHHhccc
Confidence 8999999999999999998877666555444433333 5667888999999999999999998887766632
Q ss_pred CCCccccCCceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhhhhccCCCCCCCccccccccccccccc
Q 003231 408 NEDPEYRNGKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVTAKTESKENPASESRSEMEKSVPVVKK 487 (837)
Q Consensus 408 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (837)
.. .++..|+.+++..+++.+-.
T Consensus 414 ~~-----~~~~~v~~~di~~~~~~~~~----------------------------------------------------- 435 (758)
T 1r6b_X 414 VS-----KRKKTVNVADIESVVARIAR----------------------------------------------------- 435 (758)
T ss_dssp SC-----CCCCSCCHHHHHHHHHHHSC-----------------------------------------------------
T ss_pred cc-----ccCCccCHHHHHHHHHHhcC-----------------------------------------------------
Confidence 21 12335889999998872210
Q ss_pred CCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcc---cCCchhhcCCCCCCCceEEE
Q 003231 488 DSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLP---LRRPDLFKGGLLKPCRGILL 564 (837)
Q Consensus 488 ~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~---l~~~e~~~~~~~~p~~~iLL 564 (837)
.|.......+......+...+.. +++|++++++.+...+... +..+ .+|..++||
T Consensus 436 --ip~~~~~~~~~~~l~~l~~~l~~-------------~v~g~~~~~~~l~~~i~~~~~g~~~~-------~~p~~~~ll 493 (758)
T 1r6b_X 436 --IPEKSVSQSDRDTLKNLGDRLKM-------------LVFGQDKAIEALTEAIKMARAGLGHE-------HKPVGSFLF 493 (758)
T ss_dssp --CCCCCSSSSHHHHHHHHHHHHTT-------------TSCSCHHHHHHHHHHHHHHHTTCSCT-------TSCSEEEEE
T ss_pred --CCccccchhHHHHHHHHHHHHHh-------------hccCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEE
Confidence 00000000000011223334443 3899999999998877642 1111 146678999
Q ss_pred EcCCCChHHHHHHHHHHHhCCcEEEEeccccccc------------cccccHHHHHHHHHHHHhcCCeEEEecccccccC
Q 003231 565 FGPPGTGKTMLAKAIANEAGASFINVSMSTITSK------------WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 565 ~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~------------~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~ 632 (837)
+||||||||++|+++|..++.+|+.++|+++... |+|..+. ..+....+..+++||||||||++.+
T Consensus 494 ~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~ 571 (758)
T 1r6b_X 494 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP 571 (758)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH
T ss_pred ECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH
Confidence 9999999999999999999999999999988653 3332222 2245555667789999999998743
Q ss_pred CCCCcchHHHHHHHHHHHHHhhccccccC-------CceEEEEEecCCCC-------------------------CCcHH
Q 003231 633 QRTRVGEHEAMRKIKNEFMTHWDGLLTRN-------GERILVLAATNRPF-------------------------DLDEA 680 (837)
Q Consensus 633 ~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~-------~~~vlVIaTTN~~~-------------------------~Ld~a 680 (837)
.+.+.|++.++.....+ -.+++||+|||... .++|+
T Consensus 572 ------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 639 (758)
T 1r6b_X 572 ------------DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 639 (758)
T ss_dssp ------------HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHH
T ss_pred ------------HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHH
Confidence 56777777777543221 13588999999853 57899
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhhc-----------CCChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Q 003231 681 IIRRFERRIMVGLPSAENREMILKTLLAKE-----------KVEDLDFKELAAMT--EGYSGSDLKNLCVTAAYRPVREL 747 (837)
Q Consensus 681 L~rRF~~~I~~~~P~~eer~~IL~~~l~~~-----------~~~d~dl~~LA~~t--~G~sg~DL~~L~~~Aa~~av~r~ 747 (837)
|++||+.++.|+.|+.+++..|++.++... .+++..++.|+... ..+..++|.++++.+...++.+.
T Consensus 640 l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~ 719 (758)
T 1r6b_X 640 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred HHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 999999899999999999999999887632 23667778888764 24668899999988888766654
Q ss_pred H
Q 003231 748 I 748 (837)
Q Consensus 748 ~ 748 (837)
+
T Consensus 720 ~ 720 (758)
T 1r6b_X 720 L 720 (758)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=8.4e-36 Score=343.98 Aligned_cols=280 Identities=39% Similarity=0.623 Sum_probs=232.3
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFG 601 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G 601 (837)
++|++|+|++.+++.|.+++..++.++++|...+..++.++||+||||||||++|+++|.+++.+|+.++|+++.+.++|
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g 280 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTT
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcc
Confidence 58999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHH
Q 003231 602 EDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAI 681 (837)
Q Consensus 602 ~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL 681 (837)
+....++.+|..+....|++|||||||.+.+.+... ..+...++.+.|+..|++... ..+++||+|||+++.+++++
T Consensus 281 ~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~al 357 (489)
T 3hu3_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPAL 357 (489)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGGG
T ss_pred hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHHH
Confidence 999999999999999999999999999999876543 345667888999999987643 34699999999999999999
Q ss_pred HH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Q 003231 682 IR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEK 758 (837)
Q Consensus 682 ~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~ 758 (837)
++ ||+..+.++.|+.++|.+||+.++....+ .+.++..++..+.||+++||.+||++|+..++++........+
T Consensus 358 ~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~--- 434 (489)
T 3hu3_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--- 434 (489)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC---
T ss_pred hCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccc---
Confidence 99 99999999999999999999999988777 7788999999999999999999999999999887532211000
Q ss_pred HHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCC
Q 003231 759 KKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEG 825 (837)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~ 825 (837)
.. .........+++++||..|+++++|+..++.....|.++|+||||-.
T Consensus 435 -----------~~-------~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 435 -----------ET-------IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp -----------SS-------CCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred -----------cc-------cchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 00 00011234679999999999999999999999999999999999964
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3.8e-35 Score=335.51 Aligned_cols=307 Identities=38% Similarity=0.624 Sum_probs=236.3
Q ss_pred cCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecc
Q 003231 515 IPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-GASFINVSMS 593 (837)
Q Consensus 515 i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-g~~~i~v~~s 593 (837)
+....+.++|++|+|++++++.|.+++..|+.++++|.. ...+++++||+||||||||++|+++|.++ +.+|+.++++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 344456789999999999999999999999999999875 34678999999999999999999999999 8999999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC
Q 003231 594 TITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR 673 (837)
Q Consensus 594 ~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~ 673 (837)
++.+.|+|..+..++.+|..++...|+||||||||.+++.+... .....+++.++|+..+++... ...+++||+|||+
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~ 280 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNI 280 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEESC
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCccc-CCCCEEEEecCCC
Confidence 99999999999999999999999999999999999998876543 344567888999999988743 2356999999999
Q ss_pred CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003231 674 PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEE 751 (837)
Q Consensus 674 ~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~ 751 (837)
++.++++++|||+..++++.|+.++|..|++.++...+. ++.++..|+..++||+|+||.++|++|++.|+++.....
T Consensus 281 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~ 360 (444)
T 2zan_A 281 PWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 360 (444)
T ss_dssp GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred ccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999987764 789999999999999999999999999999999875431
Q ss_pred hhHhHHHHHHHH-----Hhhcccc-hhhh-----HHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHH
Q 003231 752 RKKDMEKKKREE-----AAKSSED-ASET-----KEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWND 820 (837)
Q Consensus 752 ~~~~~~~~~~~~-----~~~~~~~-~~~~-----~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~d 820 (837)
............ .....+. ..+. ............++|+++||..|+++++||++.+ -...+..|++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~--~~~~~~~~~~ 438 (444)
T 2zan_A 361 HFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQ--DLLKLKKFTE 438 (444)
T ss_dssp EEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHH--HHHHHHHHTS
T ss_pred hhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHH--HHHHHHHHHH
Confidence 100000000000 0000000 0000 0000001112346899999999999999999765 3677889999
Q ss_pred hhcCCC
Q 003231 821 LYGEGG 826 (837)
Q Consensus 821 igG~~~ 826 (837)
.||.+|
T Consensus 439 ~~~~~~ 444 (444)
T 2zan_A 439 DFGQEG 444 (444)
T ss_dssp SCTTTC
T ss_pred HHcCCC
Confidence 999765
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=6e-35 Score=317.19 Aligned_cols=287 Identities=36% Similarity=0.603 Sum_probs=233.5
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|++|+|++++++.|.+++..++.+|+.|...+..++.++||+||||||||++|+++|.+++.+|+.++++++.+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 34679999999999999999999999999999988788899999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
++|..+..++.+|..+....|+||||||+|.+.+.+... .......++.+.++..+++... ..+++||+|||+++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence 999999999999999999999999999999997654321 0111223567888888887643 346999999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
++++++| ||+..++++.|+.++|.+|++.++...++ .++++..++..+.||+|+||.++|+.|+..|+++.+.....
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~ 246 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999998 99999999999999999999999988776 68899999999999999999999999999999987644321
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhh
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLY 822 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~dig 822 (837)
.... ... ... .. + ........+++++||.+|+++++||++.+ ....+..|++.+
T Consensus 247 ~~~~---~~~----~~~-~~---~--~~~~~~~~~v~~~~~~~al~~~~~s~~~~--~~~~~~~~~~~~ 300 (301)
T 3cf0_A 247 RERE---RQT----NPS-AM---E--VEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTL 300 (301)
T ss_dssp --------------------------------CCCBCHHHHHHHHTTCCCSSCHH--HHHHHHHHHHHH
T ss_pred hhhh---ccc----ccc-cc---c--ccccccCCccCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHh
Confidence 1000 000 000 00 0 00112346899999999999999998753 245677898865
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=308.78 Aligned_cols=259 Identities=36% Similarity=0.604 Sum_probs=209.4
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW 599 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~ 599 (837)
+.++|+||+|++++++.|.+.+..|+.+++.+...++.+++|++|+||||||||+|++++|.+++.+++.+++.++.+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 46799999999999999999999999999999988889999999999999999999999999999999999999999989
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcH
Q 003231 600 FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDE 679 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~ 679 (837)
.|..+..++.+|..+....|+++|+||+|.+.+.+... ......++.+.++..|++...+ ..++++++||+|+.+|+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDP 161 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhccccc--CCEEEEeecCChhhCCH
Confidence 99999999999999988899999999999987654322 1223346778899999987433 45899999999999999
Q ss_pred HHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhc---CC-ChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003231 680 AIIR--RFERRIMVGLPSAENREMILKTLLAKE---KV-EDLDFKELAAMT--EGYSGSDLKNLCVTAAYRPVRELIQEE 751 (837)
Q Consensus 680 aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~---~~-~d~dl~~LA~~t--~G~sg~DL~~L~~~Aa~~av~r~~~~~ 751 (837)
+++| ||++.|+++.|+.++|.+||+.+++.. .. .++++..+|..+ +||+|+||.++|++|++.|+++.+...
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~ 241 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999 999999999999999999999998642 23 688999999874 599999999999999999998754321
Q ss_pred hhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccccc
Q 003231 752 RKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASE 808 (837)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~ 808 (837)
.. . ......+++++||..|+++++||+..+
T Consensus 242 ~~------------------~---------~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 242 KS------------------G---------NEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------------------------CCBCHHHHHHHHTTCCCCC---
T ss_pred cc------------------c---------ccccCCeecHHHHHHHHHHhcCCCChh
Confidence 10 0 001224799999999999999998754
No 18
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-33 Score=342.96 Aligned_cols=428 Identities=15% Similarity=0.159 Sum_probs=263.2
Q ss_pred HHHHHHHhhcCCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCC
Q 003231 256 LYKVLVSITETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLP 335 (837)
Q Consensus 256 L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P 335 (837)
+..++....+.+|+||||| +..++.+.|++.|++ |.++|||+|+..++.+..++|++|.|||. .|.|++|
T Consensus 256 l~~~~~~~~~~~~~iLfiD-------~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p 325 (758)
T 3pxi_A 256 LKKVMDEIRQAGNIILFID-------AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQP 325 (758)
T ss_dssp HHHHHHHHHTCCCCEEEEC-------C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCC
T ss_pred HHHHHHHHHhcCCEEEEEc-------CchhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCC
Confidence 4444445555689999999 677889999999996 99999999999988888899999999994 8999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccC
Q 003231 336 EDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRN 415 (837)
Q Consensus 336 ~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~ 415 (837)
+.+++..||+.++.++...+........+. .+.+++..|+.|+++|+++|+.++.++....+.....|.
T Consensus 326 ~~~~~~~il~~~~~~~~~~~~~~i~~~al~--------~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~--- 394 (758)
T 3pxi_A 326 SVDESIQILQGLRDRYEAHHRVSITDDAIE--------AAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPP--- 394 (758)
T ss_dssp CHHHHHHHHHHTTTTSGGGSSCSCCHHHHH--------HHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--C---
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHH--------HHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCc---
Confidence 999999999986655444333332222222 577889999999999999999999999888887655443
Q ss_pred CceeecHHhHHHHHHHhhhhhhccccccccccccccccccchhhhh----hhc---cC---CCCCCCccccccccccccc
Q 003231 416 GKLVISSKSLSHGLSIFQECKRFGKDSLKMETNADGAKETGEEAVT----AKT---ES---KENPASESRSEMEKSVPVV 485 (837)
Q Consensus 416 ~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~---~~~~~~~~~~~~~~~~~~~ 485 (837)
...+++..+..++..+.. .....+++.+.....+.... ... .. .....+. +..+....+.
T Consensus 395 -----~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v--~~~~i~~~v~ 464 (758)
T 3pxi_A 395 -----NLKELEQKLDEVRKEKDA---AVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEV--TVDDIAMVVS 464 (758)
T ss_dssp -----CTHHHHHHHHHHHHHHHH---HHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---C--CTHHHHHHHH
T ss_pred -----chhhHHHHHHHHHHHHHH---HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccc--CHHHHHHHHH
Confidence 113344333322211000 00000000000000000000 000 00 0000000 0000000111
Q ss_pred ccCCCCCCCCCCCCCCCCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEE
Q 003231 486 KKDSENPPPAKAPEFPPDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLF 565 (837)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~ 565 (837)
.....|..............+...+. ++++|++.+++.+...+....... ....+|..++||+
T Consensus 465 ~~~~ip~~~~~~~~~~~l~~l~~~l~-------------~~viGq~~a~~~l~~~i~~~~~~~----~~~~~p~~~~Ll~ 527 (758)
T 3pxi_A 465 SWTGVPVSKIAQTETDKLLNMENILH-------------SRVIGQDEAVVAVAKAVRRARAGL----KDPKRPIGSFIFL 527 (758)
T ss_dssp TTC-------CHHHHSCC-CHHHHHH-------------TTSCSCHHHHHHHHHHHHHHTTTC----SCTTSCSEEEEEE
T ss_pred HHhCCChHHhhHHHHHHHHHHHHHHh-------------CcCcChHHHHHHHHHHHHHHHccc----CCCCCCceEEEEE
Confidence 11111111111111111122333332 348999999999998887521110 0112455589999
Q ss_pred cCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHH
Q 003231 566 GPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEA 642 (837)
Q Consensus 566 GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~ 642 (837)
||||||||++|+++|..+ +.+|+.++|+++...+... ...++...+..+++||||||||.+.+
T Consensus 528 Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~---------- 593 (758)
T 3pxi_A 528 GPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAHP---------- 593 (758)
T ss_dssp SCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSCH----------
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccCH----------
Confidence 999999999999999998 7899999999998876654 22344555666789999999998743
Q ss_pred HHHHHHHHHHhhcccccc-------CCceEEEEEecCCCCC------------CcHHHHHHHHHhhhcCCCCHHHHHHHH
Q 003231 643 MRKIKNEFMTHWDGLLTR-------NGERILVLAATNRPFD------------LDEAIIRRFERRIMVGLPSAENREMIL 703 (837)
Q Consensus 643 ~~~i~~~Ll~~ld~~~~~-------~~~~vlVIaTTN~~~~------------Ld~aL~rRF~~~I~~~~P~~eer~~IL 703 (837)
.+.+.|+..++..... ...+++||+|||.+.. +.|++++||+.++.|++|+.+++..|+
T Consensus 594 --~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~ 671 (758)
T 3pxi_A 594 --DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIV 671 (758)
T ss_dssp --HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHH
T ss_pred --HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHH
Confidence 5666777777654322 2245799999997654 789999999889999999999999999
Q ss_pred HHHHhhc-------C----CChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Q 003231 704 KTLLAKE-------K----VEDLDFKELAAMT--EGYSGSDLKNLCVTAAYRPVREL 747 (837)
Q Consensus 704 ~~~l~~~-------~----~~d~dl~~LA~~t--~G~sg~DL~~L~~~Aa~~av~r~ 747 (837)
+.++... + +++..++.|+... ..+..++|++++..+...++.+.
T Consensus 672 ~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~ 728 (758)
T 3pxi_A 672 SLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEE 728 (758)
T ss_dssp HHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 8877652 1 2666777777642 24567889998887777666554
No 19
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=312.78 Aligned_cols=277 Identities=40% Similarity=0.725 Sum_probs=232.7
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|++|+|++.+++.|.+++..++.+++.|.... .+++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3467999999999999999999999999999887543 678899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCc
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLD 678 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld 678 (837)
+.|..+..++.+|..+....|+||||||||.|.+.+.. +......++.+.++..+++.......+++||+|||.++.++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 99999999999999999999999999999999876543 23445678888999999987655566799999999999999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcC--CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 003231 679 EAIIRRFERRIMVGLPSAENREMILKTLLAKEK--VEDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDM 756 (837)
Q Consensus 679 ~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~--~~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~ 756 (837)
+++++||+..++++.|+.++|..|++.++...+ +++.++..|+..+.||+++||..||..|+..+++++.....
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~---- 311 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI---- 311 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh----
Confidence 999999998999999999999999999998765 47889999999999999999999999999999886421100
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCC
Q 003231 757 EKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEG 825 (837)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~ 825 (837)
. .......++|+++||..|+++++|+...+ ....+..|++.||.+
T Consensus 312 ----~------------------~~~~~~~~~i~~~d~~~al~~~~ps~~~~--~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 312 ----A------------------TITPDQVRPIAYIDFENAFRTVRPSVSPK--DLELYENWNKTFGCG 356 (357)
T ss_dssp -----------------------------CCCBCHHHHHHHHHHHGGGCCCC--CHHHHHHHHHHHSCC
T ss_pred ----c------------------cccccccCCcCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhCCC
Confidence 0 00112347899999999999999998765 367789999999975
No 20
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=9.6e-33 Score=339.47 Aligned_cols=447 Identities=16% Similarity=0.182 Sum_probs=267.3
Q ss_pred HHHHHHHHhhcC-CcEEEEEccchhHhhh-----cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCc
Q 003231 255 SLYKVLVSITET-SSVILYLRDVDKLLFQ-----SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 255 ~L~~v~~~~~~~-~p~Ilfi~di~~~l~~-----~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~ 328 (837)
.+..++..+... +|+||||||+|.+... ..++.+.|++++++ |++.|||+++.+++.+ ..+|.+|.+||+
T Consensus 250 ~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~-~~~d~aL~rRf~- 325 (854)
T 1qvr_A 250 RLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYRE-IEKDPALERRFQ- 325 (854)
T ss_dssp HHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHH-HTTCTTTCSCCC-
T ss_pred HHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhh-hccCHHHHhCCc-
Confidence 345555555443 7999999999996622 26788999999997 8999999999888776 788999999998
Q ss_pred eeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcC
Q 003231 329 NLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDN 408 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~ 408 (837)
.|.|++|+.+++..||+.++.++...+......+.+. .+.+++..|+.|+++|+++|+.+++++...++...
T Consensus 326 ~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~--------~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~ 397 (854)
T 1qvr_A 326 PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAII--------AAATLSHRYITERRLPDKAIDLIDEAAARLRMALE 397 (854)
T ss_dssp CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHH--------HHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHH--------HHHHHHhhhcccccChHHHHHHHHHHHHHHHhhcc
Confidence 6999999999999999998877776555444333333 57788999999999999999999999998887654
Q ss_pred CCccc-c-----------------CC-------c---eeecHHhHHHHHHHhhhhhhccc--------------------
Q 003231 409 EDPEY-R-----------------NG-------K---LVISSKSLSHGLSIFQECKRFGK-------------------- 440 (837)
Q Consensus 409 ~~~~~-~-----------------~~-------~---~~i~~~~~~~~l~~~~~~~~~~~-------------------- 440 (837)
..|.- . .+ + +.=....+...+..+.......+
T Consensus 398 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (854)
T 1qvr_A 398 SAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 477 (854)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33320 0 00 0 00000001111100000000000
Q ss_pred -ccccccccccccccc-chhhhh----hhcc--CCC--C-CCCcccccccccccccccCCCCCCCCCCCCCCCCchHHHh
Q 003231 441 -DSLKMETNADGAKET-GEEAVT----AKTE--SKE--N-PASESRSEMEKSVPVVKKDSENPPPAKAPEFPPDNEFEKR 509 (837)
Q Consensus 441 -~~~~~~~~~~~~~~~-~~~~~~----~~~~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 509 (837)
+.....++..++... +..+.. ...+ ... . ..+.. ..+....+......|.... ...+....
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~l~~~v~~~~~ip~~~~------~~~~~~~l 549 (854)
T 1qvr_A 478 ELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVT--EEDIAEIVSRWTGIPVSKL------LEGEREKL 549 (854)
T ss_dssp HHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEEC--HHHHHHHHHTTSSCHHHHT------TCCHHHHH
T ss_pred HHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcC--HHHHHHHHHHHhCCChHhh------cHHHHHHH
Confidence 000000000110000 000000 0000 000 0 00000 0000000000011100000 00111100
Q ss_pred hCCCccCCCCCCccccccccchHHHHHHHHHHHcc---cCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---
Q 003231 510 IRPEVIPANEIGVTFADIGALNEIKESLQELVMLP---LRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA--- 583 (837)
Q Consensus 510 l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~---l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el--- 583 (837)
..- ...-+++|+|++.+++.+...+... +..|. +|..++||+||||||||++|+++|..+
T Consensus 550 ~~l-------~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~-------~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 550 LRL-------EEELHKRVVGQDEAIRAVADAIRRARAGLKDPN-------RPIGSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp HSH-------HHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSS-------SCSEEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred HHH-------HHHHhcccCCcHHHHHHHHHHHHHHhcccCCCC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 000 0112456999999999999888652 12222 456789999999999999999999999
Q ss_pred CCcEEEEeccccccc-----cc-------cccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHH
Q 003231 584 GASFINVSMSTITSK-----WF-------GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 651 (837)
Q Consensus 584 g~~~i~v~~s~l~s~-----~~-------G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll 651 (837)
+.+|+.++|+++... .+ |... ...+....+..+++|||||||+.+.+ .+.+.|+
T Consensus 616 ~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~------------~~~~~Ll 681 (854)
T 1qvr_A 616 EEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHP------------DVFNILL 681 (854)
T ss_dssp GGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSCH------------HHHHHHH
T ss_pred CCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCH------------HHHHHHH
Confidence 789999999987653 22 3222 12344555566779999999998742 5677888
Q ss_pred HhhccccccC-------CceEEEEEecCC--------------------------CCCCcHHHHHHHHHhhhcCCCCHHH
Q 003231 652 THWDGLLTRN-------GERILVLAATNR--------------------------PFDLDEAIIRRFERRIMVGLPSAEN 698 (837)
Q Consensus 652 ~~ld~~~~~~-------~~~vlVIaTTN~--------------------------~~~Ld~aL~rRF~~~I~~~~P~~ee 698 (837)
..++.....+ -.+++||+|||. ...+.|+|++||+.++.|.+|+.++
T Consensus 682 ~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~ed 761 (854)
T 1qvr_A 682 QILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQ 761 (854)
T ss_dssp HHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHH
T ss_pred HHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHH
Confidence 8887543221 135889999997 2357899999999999999999999
Q ss_pred HHHHHHHHHhhc-----------CCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHH
Q 003231 699 REMILKTLLAKE-----------KVEDLDFKELAAMTE--GYSGSDLKNLCVTAAYRPVRELIQ 749 (837)
Q Consensus 699 r~~IL~~~l~~~-----------~~~d~dl~~LA~~t~--G~sg~DL~~L~~~Aa~~av~r~~~ 749 (837)
+..|++.++... .+++..++.|+...- .+..++|+++++.+...++.+.+-
T Consensus 762 i~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 762 IRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999887631 136777888888754 567899999999988888776543
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-32 Score=297.19 Aligned_cols=277 Identities=45% Similarity=0.789 Sum_probs=224.2
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|++|+|++.+++.|.+++..++.++++|.... .++.++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4567999999999999999999999998999887543 567899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc-CCceEEEEEecCCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR-NGERILVLAATNRPFDL 677 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~-~~~~vlVIaTTN~~~~L 677 (837)
+.|.....++.+|..+....|+||||||+|.+...+... ..+...++.+.++..+++.... .+.+++||+|||.++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 999999999999999999999999999999998765432 2223356677888888876432 23569999999999999
Q ss_pred cHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 003231 678 DEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKD 755 (837)
Q Consensus 678 d~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~ 755 (837)
++++++||+..+.++.|+.++|..|++.++...+. ++.++..++..+.||+++||.++|+.|+..++++.......
T Consensus 173 ~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~-- 250 (297)
T 3b9p_A 173 DEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK-- 250 (297)
T ss_dssp CHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-------
T ss_pred CHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc--
Confidence 99999999999999999999999999999987654 78889999999999999999999999999998864221100
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCC
Q 003231 756 MEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEG 825 (837)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~ 825 (837)
........+|+++||..|+.+++||...+ ....+..|++.||..
T Consensus 251 ------------------------~~~~~~~~~i~~~d~~~a~~~~~~s~~~~--~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 251 ------------------------CLDISAMRAITEQDFHSSLKRIRRSVAPQ--SLNSYEKWSQDYGDI 294 (297)
T ss_dssp ---------------------------CCCCCCCCHHHHHHHTTSCCCSSCHH--HHHHHHHHC------
T ss_pred ------------------------cccccccCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCe
Confidence 00112346899999999999999998654 356788999999964
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.98 E-value=3.7e-32 Score=305.54 Aligned_cols=277 Identities=45% Similarity=0.791 Sum_probs=222.7
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
...++|++|+|++.+++.|.+++..++.++++|.... .+.+++||+||||||||++|+++|.+++.+|+.++|+++.+.
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 3467999999999999999999999888888887654 567899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCc
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLD 678 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld 678 (837)
+.|..+..++.+|..++...|+||||||||.|+..+.. .......++.+.|+..+++.......+++||+|||.++.++
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 99999999999999999999999999999999876543 23345667888899999987665567799999999999999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 003231 679 EAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDM 756 (837)
Q Consensus 679 ~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~ 756 (837)
+++++||+..++++.|+.++|..|++.++...+. .+.++..|+..+.||++++|..||..|+..+++++.....
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~---- 342 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQV---- 342 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC------
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhh----
Confidence 9999999888999999999999999999987654 7889999999999999999999999999999886421100
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCC
Q 003231 757 EKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEG 825 (837)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~ 825 (837)
........+.|+++||..|+++++++...+ ....+..|++.||..
T Consensus 343 ----------------------~~~~~~~~~~i~~~d~~~al~~~~~s~~~~--~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 343 ----------------------KNMSASEMRNIRLSDFTESLKKIKRSVSPQ--TLEAYIRWNKDFGDT 387 (389)
T ss_dssp -----------------------CCSSSCCCCCCHHHHHHHHHHCCCSSCHH--HHHHHHHHHHHCC--
T ss_pred ----------------------hccchhhcCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCc
Confidence 000112346899999999999999987643 466788999999974
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=2.3e-31 Score=304.96 Aligned_cols=264 Identities=35% Similarity=0.550 Sum_probs=221.0
Q ss_pred CCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 003231 519 EIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK 598 (837)
Q Consensus 519 ~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~ 598 (837)
.+.++|+||+|++++++.+.+++.. +.+++.|...+.++++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5678999999999999999999876 778888988888899999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCC
Q 003231 599 WFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFD 676 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~ 676 (837)
++|.....++.+|..+....|+||||||+|.+.+.+... +......++++.|+..|+++... .+++||+|||+++.
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDI 166 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG--GTEEEEEEESCGGG
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEecCChhh
Confidence 999999999999999999999999999999998766431 22334456788899999876433 45999999999999
Q ss_pred CcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003231 677 LDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERK 753 (837)
Q Consensus 677 Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~ 753 (837)
++++++| ||++.+.++.|+.++|.+|++.+++..++ .++++..++..+.||+|+||.++|++|+..+.++
T Consensus 167 Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------- 239 (476)
T 2ce7_A 167 LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------- 239 (476)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-------
T ss_pred hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc-------
Confidence 9999988 99999999999999999999999988777 6788999999999999999999999999887642
Q ss_pred HhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccccccc----chhhhHHHHHhhc
Q 003231 754 KDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGS----VMNELKQWNDLYG 823 (837)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~----~~~~~~~W~digG 823 (837)
....++++||..|+.++.+...+... .....+.|.+.|+
T Consensus 240 -------------------------------~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~ 282 (476)
T 2ce7_A 240 -------------------------------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGH 282 (476)
T ss_dssp -------------------------------TCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhh
Confidence 11468999999999988765443221 2345678888876
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=5e-31 Score=282.51 Aligned_cols=267 Identities=37% Similarity=0.595 Sum_probs=218.0
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW 599 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~ 599 (837)
+.++|++|+|++++++.|.+++..++..++.+...+..++.++||+||||||||++|+++|.+++.+++.++++++...+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 45789999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc--hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCC
Q 003231 600 FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG--EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDL 677 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~L 677 (837)
.|.....++.+|..+....|+||||||+|.+.+.+.... ........+..++..+++... ..+++||+|||.++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDIL 169 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGB
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhc
Confidence 999999999999999999999999999999987654321 222334555666666665533 3459999999999999
Q ss_pred cHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003231 678 DEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKK 754 (837)
Q Consensus 678 d~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~ 754 (837)
++++++ ||+..+.++.|+.++|.+|++.++....+ .+.++..++..+.|++++||..+|+.|+..|+++.
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~------- 242 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL------- 242 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 999999 99999999999999999999999988777 67889999999999999999999999999887641
Q ss_pred hHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCCC
Q 003231 755 DMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGG 826 (837)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~~ 826 (837)
...|+++||.+|++++.+...........+-.|...+|..+
T Consensus 243 -------------------------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 243 -------------------------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp -------------------------------CSSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred -------------------------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 13699999999999998877655555666678888877654
No 25
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=4e-30 Score=272.01 Aligned_cols=246 Identities=41% Similarity=0.619 Sum_probs=208.9
Q ss_pred CCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 517 ANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 517 ~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
...+..+|++|+|++.+++.+.+++.. +.+++.+...+..+++++||+||||||||++|+++|.+++.+++.++++++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 345567999999999999999998876 7788888877778889999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC
Q 003231 597 SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP 674 (837)
Q Consensus 597 s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~ 674 (837)
..+.|.....++.+|..+....|++|||||+|.+.+.+... +......+..+.++..+++... ..+++||+|||.+
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 160 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCc
Confidence 99999999999999999998889999999999998765431 1223344677888888887643 3469999999999
Q ss_pred CCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003231 675 FDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEE 751 (837)
Q Consensus 675 ~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~ 751 (837)
+.+++++++ ||+..+.++.|+.++|.+|++.++....+ ++.++..++..+.||+++||.++|+.|+..|.++
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~----- 235 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 235 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 99999999999999999999999988777 6788999999999999999999999999887653
Q ss_pred hhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhh
Q 003231 752 RKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAA 803 (837)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~p 803 (837)
....++++||.+|++++..
T Consensus 236 ---------------------------------~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 236 ---------------------------------NKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ---------------------------------TCSSBCHHHHHHHHHHHTT
T ss_pred ---------------------------------CCCcccHHHHHHHHHHHhc
Confidence 1246999999999998753
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=2.9e-30 Score=272.45 Aligned_cols=247 Identities=33% Similarity=0.523 Sum_probs=193.0
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWF 600 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~ 600 (837)
.++|++|+|++++++.|.+++.. +..++.|...+..+++++||+||||||||++|+++|++++.+++.++++++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 57899999999999999999877 78888888778888999999999999999999999999999999999999998888
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc---hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCC
Q 003231 601 GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG---EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDL 677 (837)
Q Consensus 601 G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~---~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~L 677 (837)
|.....++.+|..+....|+||||||+|.+...+.... ........++.++..+++... ..+++||+|||.++.+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADIL 158 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhhc
Confidence 88888999999999988899999999999976553211 012233456677777776532 3469999999999999
Q ss_pred cHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCCC---hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 003231 678 DEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKVE---DLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEER 752 (837)
Q Consensus 678 d~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~~---d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~ 752 (837)
++++++ ||+..++++.|+.++|.+|++.++...+.. +.....++..+.||++++|.++|+.|+..|+++.
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~----- 233 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG----- 233 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999 999999999999999999999999887762 2345789999999999999999999988876531
Q ss_pred hHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccccc
Q 003231 753 KKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASE 808 (837)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~ 808 (837)
...|+++||..|++++.++..+.
T Consensus 234 ---------------------------------~~~i~~~d~~~a~~~~~~~~~~~ 256 (262)
T 2qz4_A 234 ---------------------------------HTSVHTLNFEYAVERVLAGTAKK 256 (262)
T ss_dssp ------------------------------------CCBCCHHHHHHHHHHHHHCC
T ss_pred ---------------------------------CCCCCHHHHHHHHHHhccChhhh
Confidence 13588889999999998876543
No 27
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=8.4e-30 Score=293.66 Aligned_cols=268 Identities=35% Similarity=0.545 Sum_probs=227.0
Q ss_pred ccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 514 VIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 514 ~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
++... +.++|+||+|+++++..+.+++.. +..+..|...+.+.++++||+||||||||+||+++|.+++.+|+.++++
T Consensus 21 ~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~ 98 (499)
T 2dhr_A 21 VLTEA-PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 98 (499)
T ss_dssp EECSC-CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eeccC-CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 33334 678999999999999999999876 7788888888888899999999999999999999999999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEec
Q 003231 594 TITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAAT 671 (837)
Q Consensus 594 ~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTT 671 (837)
++...++|.....++.+|+.+....|+|+||||||.+...+... .......+.+++++..|++... ...++++++|
T Consensus 99 ~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAat 176 (499)
T 2dhr_A 99 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAAT 176 (499)
T ss_dssp GGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEec
Confidence 99988899888889999999888889999999999997665421 1234455778889999988743 3458999999
Q ss_pred CCCCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 003231 672 NRPFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELI 748 (837)
Q Consensus 672 N~~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~ 748 (837)
|+|+.+|++++| ||++.+.++.|+.++|.+||+.+++...+ +++++..+|..+.||+|+||.++|++|+..|.++
T Consensus 177 n~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~-- 254 (499)
T 2dhr_A 177 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE-- 254 (499)
T ss_dssp SCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT--
T ss_pred CChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--
Confidence 999999999998 89999999999999999999998877766 6788999999999999999999999998877542
Q ss_pred HHHhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccc----hhhhHHHHHhhc
Q 003231 749 QEERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSV----MNELKQWNDLYG 823 (837)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~----~~~~~~W~digG 823 (837)
....|+++||..|+.++.+...+.... ....+.|.++|+
T Consensus 255 ------------------------------------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~ 297 (499)
T 2dhr_A 255 ------------------------------------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGH 297 (499)
T ss_dssp ------------------------------------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHH
T ss_pred ------------------------------------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHH
Confidence 124699999999999998876543322 235679999886
No 28
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=6.6e-28 Score=254.53 Aligned_cols=226 Identities=38% Similarity=0.592 Sum_probs=190.6
Q ss_pred CCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 517 ANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 517 ~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
...+.++|++++|+++++..+..++.. +..+..+...+...+++++|+||||||||+|++++|..++.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 344567999999999999999998876 5667777777778888999999999999999999999999999999999888
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC
Q 003231 597 SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP 674 (837)
Q Consensus 597 s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~ 674 (837)
..+.+.....+..+|+.+....|+++|+||+|.+...+... .......+..+.++..+++... ...++++++||.|
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p 164 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 164 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCc
Confidence 77788778888899999887789999999999987654321 1223445677888888887643 3448999999999
Q ss_pred CCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003231 675 FDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVR 745 (837)
Q Consensus 675 ~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~ 745 (837)
+.+|++++| ||+..+.++.|+.++|.+|++.+++...+ .+.++..++..+.||+++||.++|++|+..|.+
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~ 238 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 238 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998 89999999999999999999998877766 678899999999999999999999999887764
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=2.9e-28 Score=297.10 Aligned_cols=287 Identities=38% Similarity=0.612 Sum_probs=248.2
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW 599 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~ 599 (837)
..++|++|+|++.+++.|.+++..++.+|++|...+..++.++||+||||||||++|+++|.+++.+++.+++.++.+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcH
Q 003231 600 FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDE 679 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~ 679 (837)
.|..+..++.+|..+....|++|||||+|.+++.+... ..+...++.+.++..+++.... ..+++|+|||+++.+++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcCH
Confidence 99999999999999999999999999999998876542 3455677888899999887543 45899999999999999
Q ss_pred HHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 003231 680 AIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDM 756 (837)
Q Consensus 680 aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~ 756 (837)
++++ ||+..+.++.|+.++|.+|++.++....+ .+.++..++..+.||+++|+..+|.+|+..++++........+
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~- 434 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED- 434 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH-
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh-
Confidence 9998 99999999999999999999999888777 7788999999999999999999999999988876432111000
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHHHhhcCCCcccc
Q 003231 757 EKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKK 830 (837)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~digG~~~~r~~ 830 (837)
............++++||..|+....|+..++.....+.+.|+|++|+..+|+.
T Consensus 435 --------------------~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~ 488 (806)
T 1ypw_A 435 --------------------ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp --------------------HHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHH
T ss_pred --------------------hccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhh
Confidence 000011233467889999999999999998888888899999999999998764
No 30
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-27 Score=263.12 Aligned_cols=234 Identities=12% Similarity=0.179 Sum_probs=192.4
Q ss_pred cccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 66 IKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 66 ~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
-+|||+++.++ ++.|..|.+++..+|+||++.+ +--.+.+++|||+|||++++++||||+|++.+++|+.++.+++
T Consensus 143 p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~f~--~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 143 PDSTYDMVGGL--TKQIKEIKEVIELPVKHPELFE--SLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp CSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHH--HHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 47999999999 9999999999999999999832 2224568999999999999999999999999999999999888
Q ss_pred chhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcc
Q 003231 146 SLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMS 225 (837)
Q Consensus 146 ~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (837)
..+
T Consensus 219 ~sk----------------------------------------------------------------------------- 221 (405)
T 4b4t_J 219 VQK----------------------------------------------------------------------------- 221 (405)
T ss_dssp SCS-----------------------------------------------------------------------------
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 643
Q ss_pred cccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHHhc
Q 003231 226 SISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLKKL 297 (837)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~~l 297 (837)
|.++....|..+|+.+.+. .|+||||||||.++..+ .+.-..+..+|..+
T Consensus 222 -------------------~vGese~~vr~lF~~Ar~~---aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 279 (405)
T 4b4t_J 222 -------------------YIGEGSRMVRELFVMAREH---APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQL 279 (405)
T ss_dssp -------------------STTHHHHHHHHHHHHHHHT---CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHH
T ss_pred -------------------ccchHHHHHHHHHHHHHHh---CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 3344445788899999886 99999999999977432 12222333444443
Q ss_pred c-----CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhc
Q 003231 298 S-----GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAA 370 (837)
Q Consensus 298 ~-----g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~ 370 (837)
+ .+|+|||+ ||++..+|+||.| ||..+|+|++|+.++|.+||+.++.+ .-..
T Consensus 280 Dg~~~~~~V~vIaA-----TNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~----------------~~l~ 338 (405)
T 4b4t_J 280 DGFETSKNIKIIMA-----TNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK----------------MNLT 338 (405)
T ss_dssp HTTTCCCCEEEEEE-----ESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT----------------SBCC
T ss_pred hccCCCCCeEEEec-----cCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC----------------CCCC
Confidence 3 38999998 9999999999999 99999999999999999999986531 1234
Q ss_pred CCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 371 NDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 371 ~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
.+++...|+..|.+ |++++|..++..|+-+++.++ +..|+++||+.|+..+..
T Consensus 339 ~dvdl~~lA~~t~G---~SGADi~~l~~eA~~~Air~~--------~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 339 RGINLRKVAEKMNG---CSGADVKGVCTEAGMYALRER--------RIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp SSCCHHHHHHHCCS---CCHHHHHHHHHHHHHHHHHTT--------CSBCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHcC--------CCCcCHHHHHHHHHHHhC
Confidence 56888999999999 999999999999999888643 345899999999986654
No 31
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=2.7e-30 Score=274.53 Aligned_cols=252 Identities=35% Similarity=0.552 Sum_probs=205.7
Q ss_pred CCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 003231 517 ANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT 596 (837)
Q Consensus 517 ~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~ 596 (837)
+..+.++|++|+|++.+++.+.+++.. +.+++.|...+..+++++||+||||||||++|+++|.+++.+++.++++++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 445567999999999999999998876 7888888877778888999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcch---HHHHHHHHHHHHHhhccccccCCceEEEEEecCC
Q 003231 597 SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGE---HEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR 673 (837)
Q Consensus 597 s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~---~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~ 673 (837)
..+.|.....++.+|..+....|+||||||+|.+.+.+...+. .....++++.++..+++... ...+++||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~ 160 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNR 160 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCC
Confidence 8888888777888999999889999999999999765422110 00111344566666666432 2345899999999
Q ss_pred CCCCcHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 003231 674 PFDLDEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQE 750 (837)
Q Consensus 674 ~~~Ld~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~ 750 (837)
++.+++++++ ||+..+.++.|+.++|.+|++.++....+ .+.++..++..+.||+|+||.++|+.|+..|..+
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~---- 236 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN---- 236 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS----
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----
Confidence 9999999998 99999999999999999999999987766 6778889999999999999999999888766431
Q ss_pred HhhHhHHHHHHHHHhhcccchhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhccccc
Q 003231 751 ERKKDMEKKKREEAAKSSEDASETKEEAKEERVITLRPLNMEDMRQAKNQVAASFASE 808 (837)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~ 808 (837)
....++.+||..|+.++.|+..+.
T Consensus 237 ----------------------------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 ----------------------------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp ----------------------------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred ----------------------------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 124689999999999888877643
No 32
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=1.8e-26 Score=247.13 Aligned_cols=223 Identities=39% Similarity=0.598 Sum_probs=188.2
Q ss_pred CCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 003231 520 IGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKW 599 (837)
Q Consensus 520 ~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~ 599 (837)
+.++|++|+|++++++.+..++.. +..+..+...+...+++++|+||||||||+|++++|..++.+++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 467999999999999999998876 5667777777777888899999999999999999999999999999999888777
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCc--chHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCC
Q 003231 600 FGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRV--GEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDL 677 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~L 677 (837)
.+.....+..+|+.+....|+++|+||+|.+...+... .........++.++..+++... ...++++++||.|+.+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDIL 191 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTSS
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchhC
Confidence 77777888899999988889999999999887654321 1123345667778888887643 3348999999999999
Q ss_pred cHHHHH--HHHHhhhcCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003231 678 DEAIIR--RFERRIMVGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVR 745 (837)
Q Consensus 678 d~aL~r--RF~~~I~~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~ 745 (837)
|++++| ||+..+.++.|+.++|.+|++.+++...+ .++++..++..++|++++||.++|+.|+..+.+
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 262 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999998 89999999999999999999999887666 678899999999999999999999999887754
No 33
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-26 Score=259.52 Aligned_cols=236 Identities=14% Similarity=0.187 Sum_probs=193.9
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-+|||+++.++ |+.|..|.+++..+|+|+++. .+.-.+.+++|||+|||++++++||||+|++++++|+.++.+
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~f--~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPELY--EEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHHH--HHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHHH--HhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 5678999999999 999999999999999999983 332346789999999999999999999999999999999998
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
+|..+
T Consensus 251 ~l~sk--------------------------------------------------------------------------- 255 (437)
T 4b4t_I 251 ELIQK--------------------------------------------------------------------------- 255 (437)
T ss_dssp GGCCS---------------------------------------------------------------------------
T ss_pred Hhhhc---------------------------------------------------------------------------
Confidence 88643
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~ 295 (837)
|.++....+..+|+.+.+. .|+||||||+|.++..+ .+.-..+..+|.
T Consensus 256 ---------------------~vGesek~ir~lF~~Ar~~---aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~ 311 (437)
T 4b4t_I 256 ---------------------YLGDGPRLCRQIFKVAGEN---APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 311 (437)
T ss_dssp ---------------------SSSHHHHHHHHHHHHHHHT---CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHH
T ss_pred ---------------------cCchHHHHHHHHHHHHHhc---CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHH
Confidence 3344445788899999886 89999999999977443 122223333333
Q ss_pred hc-----cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 296 KL-----SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 296 ~l-----~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.+ .++|+|||+ ||++..+|+||.| ||..+|+|++|+.++|.+||+.++.+ .-
T Consensus 312 ~lDg~~~~~~ViVIaA-----TNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~----------------~~ 370 (437)
T 4b4t_I 312 QLDGFDDRGDVKVIMA-----TNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK----------------MN 370 (437)
T ss_dssp HHHHCCCSSSEEEEEE-----ESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT----------------SC
T ss_pred HhhCcCCCCCEEEEEe-----CCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC----------------CC
Confidence 33 248999998 8999999999999 99999999999999999999987532 11
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
...+++...|+..+.+ |++++|..++..|+.+++.++ +..|+.+||+.|+..+..
T Consensus 371 l~~dvdl~~LA~~T~G---fSGADI~~l~~eA~~~Air~~--------~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 371 LSEDVNLETLVTTKDD---LSGADIQAMCTEAGLLALRER--------RMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp BCSCCCHHHHHHHCCS---CCHHHHHHHHHHHHHHHHHTT--------CSCBCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHcC--------CCccCHHHHHHHHHHHhC
Confidence 2356788999999999 999999999999999988654 345899999999986654
No 34
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-26 Score=260.03 Aligned_cols=236 Identities=15% Similarity=0.226 Sum_probs=194.3
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-+|||+++.++ ++.|..|.+++..+|+||++ |.+.-.+.+++|||+|||++++++||||+|++++++|+.++.+
T Consensus 174 ~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~--f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 174 EKPTETYSDVGGL--DKQIEELVEAIVLPMKRADK--FKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHH--HHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 4568999999999 99999999999999999998 3332346789999999999999999999999999999999998
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
+|..+
T Consensus 250 ~l~~~--------------------------------------------------------------------------- 254 (434)
T 4b4t_M 250 QLVQM--------------------------------------------------------------------------- 254 (434)
T ss_dssp GGCSS---------------------------------------------------------------------------
T ss_pred hhhhc---------------------------------------------------------------------------
Confidence 88643
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~ 295 (837)
|.++....+..+|..+... .|+||||||+|.++..+ .+.-..+..+|.
T Consensus 255 ---------------------~vGese~~ir~lF~~A~~~---aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 255 ---------------------YIGEGAKLVRDAFALAKEK---APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp ---------------------CSSHHHHHHHHHHHHHHHH---CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred ---------------------ccchHHHHHHHHHHHHHhc---CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 3333445788899999887 99999999999977433 123333444454
Q ss_pred hccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 296 KLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 296 ~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.+.| +|+|||+ ||++..+|+||.| ||..+|+|++|+.++|.+||+.++.+ ..
T Consensus 311 ~ldg~~~~~~ViVIaa-----TNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~----------------~~ 369 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAA-----TNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK----------------MT 369 (434)
T ss_dssp HHTTSCSSCSSEEEEE-----CSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH----------------SC
T ss_pred HhhccCCCCCEEEEEe-----CCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC----------------CC
Confidence 4433 7899998 8999999999998 99999999999999999999987632 22
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
...+++...|+..+.+ |++++|..++..|+.+++.++. -.|+.+||..|+..+++
T Consensus 370 ~~~dvdl~~lA~~t~G---~sGADi~~l~~eA~~~a~r~~~--------~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 370 TDDDINWQELARSTDE---FNGAQLKAVTVEAGMIALRNGQ--------SSVKHEDFVEGISEVQA 424 (434)
T ss_dssp BCSCCCHHHHHHHCSS---CCHHHHHHHHHHHHHHHHHHTC--------SSBCHHHHHHHHHSCSS
T ss_pred CCCcCCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHcCC--------CCcCHHHHHHHHHHHhC
Confidence 3356788899999999 9999999999999988886544 24899999999985544
No 35
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.6e-25 Score=252.59 Aligned_cols=234 Identities=13% Similarity=0.180 Sum_probs=191.0
Q ss_pred ccccccccccccccHHHHHHHHHHHHhhccccccc-ccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 65 DIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEIS-KHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 65 ~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
.-+|||+++.++ ++.|..|.+++..+|+++++. +++ .+.+++|||+||+++++++||||+|++.+++|+.++.+
T Consensus 203 ~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 203 KPDVTYSDVGGC--KDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp SCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 346999999999 999999999999999999983 233 36799999999999999999999999999999999998
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
+|..+
T Consensus 278 ~L~sk--------------------------------------------------------------------------- 282 (467)
T 4b4t_H 278 ELVQK--------------------------------------------------------------------------- 282 (467)
T ss_dssp GGCCC---------------------------------------------------------------------------
T ss_pred Hhhcc---------------------------------------------------------------------------
Confidence 88643
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~ 295 (837)
|.++....+..+|..+... .|+||||||+|.++..+ .+....+-.+|.
T Consensus 283 ---------------------~vGesek~ir~lF~~Ar~~---aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 338 (467)
T 4b4t_H 283 ---------------------YVGEGARMVRELFEMARTK---KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT 338 (467)
T ss_dssp ---------------------SSSHHHHHHHHHHHHHHHT---CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH
T ss_pred ---------------------cCCHHHHHHHHHHHHHHhc---CCceEeecccccccccccCcCCCccHHHHHHHHHHHH
Confidence 3333444788899988886 99999999999977432 122222333344
Q ss_pred hc-----cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 296 KL-----SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 296 ~l-----~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.+ .++|+|||+ ||++..+|+||.| ||..+|+|++|+.++|.+||+.++.+ +-
T Consensus 339 ~lDg~~~~~~ViVIaA-----TNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~----------------~~ 397 (467)
T 4b4t_H 339 QLDGFDPRGNIKVMFA-----TNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS----------------MS 397 (467)
T ss_dssp HHHSSCCTTTEEEEEE-----CSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT----------------SC
T ss_pred HhhccCCCCcEEEEeC-----CCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC----------------CC
Confidence 33 248999998 8999999999999 99999999999999999999986531 12
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
...+++...|+.+|.+ |++++|..++..|+-+++.++. -.|+.+||+.|+..+..
T Consensus 398 l~~dvdl~~LA~~T~G---fSGADI~~l~~eAa~~Air~~~--------~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 398 VERGIRWELISRLCPN---STGAELRSVCTEAGMFAIRARR--------KVATEKDFLKAVDKVIS 452 (467)
T ss_dssp BCSSCCHHHHHHHCCS---CCHHHHHHHHHHHHHHHHHHTC--------SSBCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHcCC--------CccCHHHHHHHHHHHhc
Confidence 3356888999999999 9999999999999988886543 24899999999986543
No 36
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.3e-26 Score=255.21 Aligned_cols=236 Identities=17% Similarity=0.217 Sum_probs=191.9
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-+|||+++.++ ++.|..|.+++..+|+|+++.+.. =.+.+++|||+|||++++++||||+|++++++|+.++.+
T Consensus 174 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~f~~~--g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 174 EQGEITFDGIGGL--TEQIRELREVIELPLKNPEIFQRV--GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp ESCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHHHHHH--CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cCCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHHHHhC--CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 3458999999999 999999999999999999983322 246789999999999999999999999999999999998
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
++..+
T Consensus 250 ~l~sk--------------------------------------------------------------------------- 254 (437)
T 4b4t_L 250 GIVDK--------------------------------------------------------------------------- 254 (437)
T ss_dssp GTCCS---------------------------------------------------------------------------
T ss_pred hhccc---------------------------------------------------------------------------
Confidence 88643
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~ 295 (837)
|.++....+..+|..+... .|+||||||+|.++..+ .+.-..+..+|.
T Consensus 255 ---------------------~~Gese~~ir~~F~~A~~~---~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 310 (437)
T 4b4t_L 255 ---------------------YIGESARIIREMFAYAKEH---EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310 (437)
T ss_dssp ---------------------SSSHHHHHHHHHHHHHHHS---CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH
T ss_pred ---------------------cchHHHHHHHHHHHHHHhc---CCceeeeecccccccccccCCCCcchHHHHHHHHHHH
Confidence 3333445788899988876 99999999999977432 122223334444
Q ss_pred hcc-----CCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 296 KLS-----GSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 296 ~l~-----g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.++ ++|+|||+ ||++..+|+||.| ||..+|+|++|+.++|.+||+.++.+ ..
T Consensus 311 ~lDg~~~~~~vivI~A-----TNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~----------------~~ 369 (437)
T 4b4t_L 311 QMDGFDNLGQTKIIMA-----TNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK----------------VK 369 (437)
T ss_dssp HHHSSSCTTSSEEEEE-----ESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT----------------SC
T ss_pred HhhcccCCCCeEEEEe-----cCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC----------------CC
Confidence 443 37899998 8999999999998 59999999999999999999987632 12
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
...+++...|+.++.+ |++++|..++..|+.+++..+. -.|+.+||..|+..+.+
T Consensus 370 ~~~d~dl~~lA~~t~G---~sGADi~~l~~eA~~~air~~~--------~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 370 KTGEFDFEAAVKMSDG---FNGADIRNCATEAGFFAIRDDR--------DHINPDDLMKAVRKVAE 424 (437)
T ss_dssp BCSCCCHHHHHHTCCS---CCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHHHh
Confidence 2346788899999999 9999999999999999886543 24899999999986655
No 37
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.8e-24 Score=244.35 Aligned_cols=232 Identities=16% Similarity=0.211 Sum_probs=187.8
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-+|||+++.++ ++.|..|.+++..+|+|+++.+.. =.+.+++|||+|||++++++||||+|++++++|+.++.+
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~~~~~--g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADLYEQI--GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHH--CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHHHHhC--CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 3457999999999 999999999999999999983322 136789999999999999999999999999999999998
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
++..+
T Consensus 241 ~l~~~--------------------------------------------------------------------------- 245 (428)
T 4b4t_K 241 EFVHK--------------------------------------------------------------------------- 245 (428)
T ss_dssp GTCCS---------------------------------------------------------------------------
T ss_pred hhhcc---------------------------------------------------------------------------
Confidence 87543
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc-----------HHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS-----------QRFYNLLDK 292 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-----------~~~~~~lk~ 292 (837)
|.++....|..+|..+... .|+||||||+|.++..+ .+..+.|-.
T Consensus 246 ---------------------~~Ge~e~~ir~lF~~A~~~---aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~ 301 (428)
T 4b4t_K 246 ---------------------YLGEGPRMVRDVFRLAREN---APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT 301 (428)
T ss_dssp ---------------------SCSHHHHHHHHHHHHHHHT---CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH
T ss_pred ---------------------ccchhHHHHHHHHHHHHHc---CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH
Confidence 3333344778899988876 89999999999977443 123333333
Q ss_pred HHHhc--cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeC-CCChHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 003231 293 LLKKL--SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVK-LPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEV 367 (837)
Q Consensus 293 ~l~~l--~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~-~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~v 367 (837)
.++.+ ..+|+|||+ ||++..+|+||.| ||..+|+|+ +|+.++|..||+.++.+.
T Consensus 302 ~ldg~~~~~~v~vI~a-----TN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~---------------- 360 (428)
T 4b4t_K 302 QMDGFDQSTNVKVIMA-----TNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM---------------- 360 (428)
T ss_dssp HHHHSCSSCSEEEEEE-----ESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS----------------
T ss_pred HhhCCCCCCCEEEEEe-----cCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC----------------
Confidence 33322 247999998 8999999999999 999999995 999999999999876321
Q ss_pred hhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 368 LAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 368 l~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
-...+++...|+..|.+ |++++|..++..|+-+++.++. -.|+.+||+.|+.
T Consensus 361 ~l~~~~dl~~lA~~t~G---~sgadi~~l~~eA~~~a~r~~~--------~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 361 SLAPEADLDSLIIRNDS---LSGAVIAAIMQEAGLRAVRKNR--------YVILQSDLEEAYA 412 (428)
T ss_dssp CBCTTCCHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHHH
T ss_pred CCCcccCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCC--------CCCCHHHHHHHHH
Confidence 12346788899999999 9999999999999988886543 3489999999997
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.89 E-value=4.5e-23 Score=223.03 Aligned_cols=175 Identities=18% Similarity=0.278 Sum_probs=133.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHH----HhcCCeEEEecccccc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLA----AKVSPTIIFVDEVDSM 630 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A----~~~~psVLfIDEID~L 630 (837)
+.+++.++||+||||||||++|+++|++++.+|+.++++++.+.++|..+..++.+|..+ +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 457789999999999999999999999999999999999999999999999999999998 5678999999999999
Q ss_pred cCCCCCcch-HHHHHHHHHHHHHhhcccc---------ccCCceEEEEEecCCCCCCcHHHHH--HHHHhhhcCCCCHHH
Q 003231 631 LGQRTRVGE-HEAMRKIKNEFMTHWDGLL---------TRNGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPSAEN 698 (837)
Q Consensus 631 ~~~r~~~~~-~~~~~~i~~~Ll~~ld~~~---------~~~~~~vlVIaTTN~~~~Ld~aL~r--RF~~~I~~~~P~~ee 698 (837)
++.+.+... ......+.+.|+..+|+.. .....+++||+|||+++.++++++| ||+..+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 875443211 1123456688888887442 1133569999999999999999997 8877776 579999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHHHHH
Q 003231 699 REMILKTLLAKEKVEDLDFKELAAMTEGYSGSDLKN 734 (837)
Q Consensus 699 r~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~DL~~ 734 (837)
|.+|++.++... ++++..++..+.||++++|..
T Consensus 190 r~~Il~~~~~~~---~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTD---NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGG---CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCC---CCCHHHHHHHhCCCCcccHHH
Confidence 999999888765 456778888889999988864
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.82 E-value=2.1e-20 Score=202.09 Aligned_cols=216 Identities=16% Similarity=0.179 Sum_probs=167.0
Q ss_pred ccc-ccccchHHHHHHHHHHHcccCCchhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEe
Q 003231 523 TFA-DIGALNEIKESLQELVMLPLRRPDLFKGGL---LKPCRGILLFGPPGTGKTMLAKAIANEA-------GASFINVS 591 (837)
Q Consensus 523 ~fd-dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~---~~p~~~iLL~GPpGtGKT~LAralA~el-------g~~~i~v~ 591 (837)
.++ +|+|++.+++.|.+++..+. .+..+...+ ..+..++||+||||||||++|+++|+.+ ..+++.++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred HHHHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 344 69999999999999887643 233332211 2456689999999999999999999988 34899999
Q ss_pred ccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEec
Q 003231 592 MSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAAT 671 (837)
Q Consensus 592 ~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTT 671 (837)
++++.+.++|.....+..+|..+ .++||||||+|.+.+.+.... ......+.|+..++.. ..+++||++|
T Consensus 107 ~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~---~~~~~~~~Ll~~l~~~----~~~~~~i~~~ 176 (309)
T 3syl_A 107 RDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD---YGQEAIEILLQVMENN----RDDLVVILAG 176 (309)
T ss_dssp GGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C---CTHHHHHHHHHHHHHC----TTTCEEEEEE
T ss_pred HHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc---ccHHHHHHHHHHHhcC----CCCEEEEEeC
Confidence 99999999999988888888876 458999999999986543211 1234556666666643 3457888888
Q ss_pred CCCC-----CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHc-------CCCCHHHHHHHHH
Q 003231 672 NRPF-----DLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMT-------EGYSGSDLKNLCV 737 (837)
Q Consensus 672 N~~~-----~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t-------~G~sg~DL~~L~~ 737 (837)
|... .++|++++||+..+.|+.|+.+++..|++.++...+. ++..+..++..+ ...+++++.+++.
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 7642 3568999999999999999999999999999998766 677777787763 2235899999999
Q ss_pred HHHHHHHHHHHH
Q 003231 738 TAAYRPVRELIQ 749 (837)
Q Consensus 738 ~Aa~~av~r~~~ 749 (837)
.|+..+..+.+.
T Consensus 257 ~a~~~~~~r~~~ 268 (309)
T 3syl_A 257 RARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988887654
No 40
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.82 E-value=2.2e-22 Score=230.66 Aligned_cols=201 Identities=22% Similarity=0.256 Sum_probs=139.7
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccc
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG--ASFINVSMSTITSK 598 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg--~~~i~v~~s~l~s~ 598 (837)
...|++|+|++++++.+..++.. +.. +..+++++||+||||||||++|+++|++++ .+|+.++++++.++
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~-~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVEL-IKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-HHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHH-HHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 34789999999999999887754 211 235678999999999999999999999999 99999999999999
Q ss_pred cccccHHHHHHHHHHH---HhcCCeEEEecccccccCCCCCcchHHH---HH---------------HHHHHHHHhhccc
Q 003231 599 WFGEDEKNVRALFTLA---AKVSPTIIFVDEVDSMLGQRTRVGEHEA---MR---------------KIKNEFMTHWDGL 657 (837)
Q Consensus 599 ~~G~~e~~l~~lf~~A---~~~~psVLfIDEID~L~~~r~~~~~~~~---~~---------------~i~~~Ll~~ld~~ 657 (837)
++|..+. ++.+|..+ +...|+||||||+|.+++.+........ .. ++.+.++..++..
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999887 89999999 7788999999999999987754321111 11 1122344445433
Q ss_pred cccCCceEEEEEecCCCCCCcHHHHH--HHHH--hhhcCCCC--HHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHH
Q 003231 658 LTRNGERILVLAATNRPFDLDEAIIR--RFER--RIMVGLPS--AENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSD 731 (837)
Q Consensus 658 ~~~~~~~vlVIaTTN~~~~Ld~aL~r--RF~~--~I~~~~P~--~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~D 731 (837)
....+..++|++|||+++.++++++| ||+. .+.++.|+ .++|.+|++.+.. .+++.++..+.| |+|
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~------~dl~~~a~~t~g--gad 255 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL------HDLDVANARPQG--GQD 255 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH------HHHHHTC----------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH------HHHHHHHHhCCC--hhH
Confidence 23345567778999999999999876 9988 56777774 4677777764432 378899999999 999
Q ss_pred HHHHHHH
Q 003231 732 LKNLCVT 738 (837)
Q Consensus 732 L~~L~~~ 738 (837)
|.++|..
T Consensus 256 l~~l~~~ 262 (456)
T 2c9o_A 256 ILSMMGQ 262 (456)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 9999954
No 41
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=197.04 Aligned_cols=215 Identities=19% Similarity=0.271 Sum_probs=160.2
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhh-CCeEEEeec
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFF-ESKLLLLDV 142 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~-~a~ll~ld~ 142 (837)
+.-+|+|+++.++ ++.|..|.+++..+++++++.+ . ....+++|||+||+++++++||||+|+++ +++++.++.
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~--~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT--G-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGGSC--T-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHHHh--C-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 3457899999998 9999999999999999999844 2 34567899999999999999999999999 999999888
Q ss_pred cccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCC
Q 003231 143 NDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNAS 222 (837)
Q Consensus 143 ~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (837)
.++..+| .|
T Consensus 80 ~~l~~~~---~g-------------------------------------------------------------------- 88 (322)
T 1xwi_A 80 SDLVSKW---LG-------------------------------------------------------------------- 88 (322)
T ss_dssp CSSCCSS---CC--------------------------------------------------------------------
T ss_pred HHHHhhh---hh--------------------------------------------------------------------
Confidence 7765322 11
Q ss_pred CcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHH
Q 003231 223 DMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLL 294 (837)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l 294 (837)
.....+..+|+.+..- +|.||||||||.+...+ .+..+.|-..+
T Consensus 89 -------------------------~~~~~~~~lf~~a~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 140 (322)
T 1xwi_A 89 -------------------------ESEKLVKNLFQLAREN---KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQM 140 (322)
T ss_dssp -------------------------SCHHHHHHHHHHHHHT---SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhc---CCcEEEeecHHHhccccccccchHHHHHHHHHHHHH
Confidence 1122566677776654 89999999999965332 12333333333
Q ss_pred Hhc---cCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcC
Q 003231 295 KKL---SGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAAN 371 (837)
Q Consensus 295 ~~l---~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~ 371 (837)
+.+ .++|+|||+ +|++..+|++|.|||...|.|++|+.++|..||+.++.+... . -.
T Consensus 141 d~~~~~~~~v~vI~a-----tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~-----------l~ 200 (322)
T 1xwi_A 141 QGVGVDNDGILVLGA-----TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN----S-----------LT 200 (322)
T ss_dssp HCSSSCCTTEEEEEE-----ESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB----C-----------CC
T ss_pred hcccccCCCEEEEEe-----cCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC----C-----------CC
Confidence 322 467999998 577889999999999999999999999999999986532110 0 01
Q ss_pred CCChhHHhhcccCCCCCChhhHHHHHHHHHHhhh
Q 003231 372 DLECDDLGSICQADTMVLSNYIEEIVVSAISHHL 405 (837)
Q Consensus 372 ~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l 405 (837)
+.++..|...+.+ +++++|..++..|+-.++
T Consensus 201 ~~~l~~la~~t~G---~sgadl~~l~~~A~~~a~ 231 (322)
T 1xwi_A 201 EADFRELGRKTDG---YSGADISIIVRDALMQPV 231 (322)
T ss_dssp HHHHHHHHHTCTT---CCHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHH
Confidence 2345556666666 788888888877765554
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.80 E-value=9e-19 Score=193.93 Aligned_cols=199 Identities=19% Similarity=0.208 Sum_probs=145.4
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA--SFINVSMSTITSKW 599 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~--~~i~v~~s~l~s~~ 599 (837)
.+|++++|++.+++.+..+... +.. +..+++++||+||||||||++|+++|+.++. +++.+++..+...+
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~-~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEM-IRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHH-HHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHHHH-HHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 4699999999999887666544 111 1235689999999999999999999999974 88888877644333
Q ss_pred ccc-------------------------------------------------cHHHHHHHHHHHHhc---------CCeE
Q 003231 600 FGE-------------------------------------------------DEKNVRALFTLAAKV---------SPTI 621 (837)
Q Consensus 600 ~G~-------------------------------------------------~e~~l~~lf~~A~~~---------~psV 621 (837)
.+. ....++..+..+... .|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 221 123344444443321 2679
Q ss_pred EEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEec-----------CCCCCCcHHHHHHHHHhhh
Q 003231 622 IFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAAT-----------NRPFDLDEAIIRRFERRIM 690 (837)
Q Consensus 622 LfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTT-----------N~~~~Ld~aL~rRF~~~I~ 690 (837)
|||||+|.+.. ...+.|+..++.. ...++++++. |.+..+++++++||.. +.
T Consensus 193 l~IDEi~~l~~------------~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~ 255 (368)
T 3uk6_A 193 LFIDEVHMLDI------------ESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VS 255 (368)
T ss_dssp EEEESGGGSBH------------HHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EE
T ss_pred EEEhhccccCh------------HHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EE
Confidence 99999998842 3445555555432 2235555554 3577899999999954 89
Q ss_pred cCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003231 691 VGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVR 745 (837)
Q Consensus 691 ~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~ 745 (837)
|+.|+.+++..|++..+...+. ++..++.++..+.+.+++++.++|..|+..|..
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887654 788899999999856889999999988887654
No 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=1.5e-18 Score=190.10 Aligned_cols=205 Identities=21% Similarity=0.258 Sum_probs=150.7
Q ss_pred CCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003231 502 PDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 502 ~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~ 581 (837)
..+.|..++++. +|++++|++.+++.+..++....... .+..++||+||||||||++|+++|+
T Consensus 15 ~~~~~~~~~~p~---------~~~~iiG~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 15 FDETYETSLRPS---------NFDGYIGQESIKKNLNVFIAAAKKRN--------ECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp --------CCCC---------SGGGCCSCHHHHHHHHHHHHHHHHTT--------SCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred hhhhhhhccCCC---------CHHHhCChHHHHHHHHHHHHHHHhcC--------CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 345677777766 89999999999999999887632111 3567899999999999999999999
Q ss_pred HhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc--
Q 003231 582 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-- 659 (837)
Q Consensus 582 elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-- 659 (837)
.++.+|+.+++..+. ....+...+.. ...+++||||||+.+.. ...+.|+..++....
T Consensus 78 ~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~------------~~~~~Ll~~l~~~~~~~ 137 (338)
T 3pfi_A 78 EMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLSP------------AIEEVLYPAMEDYRLDI 137 (338)
T ss_dssp HTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCC--
T ss_pred HhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcCH------------HHHHHHHHHHHhccchh
Confidence 999999999997653 22233333332 24579999999998842 233444444443210
Q ss_pred ------------cCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcC
Q 003231 660 ------------RNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTE 725 (837)
Q Consensus 660 ------------~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~ 725 (837)
....++++|++||....+++++++||+..+.++.|+.+++..+++.++...+. ++..+..++..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~ 217 (338)
T 3pfi_A 138 IIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR 217 (338)
T ss_dssp -------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT
T ss_pred hcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC
Confidence 01114899999999999999999999889999999999999999999987765 7778888998776
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 003231 726 GYSGSDLKNLCVTAAYRPV 744 (837)
Q Consensus 726 G~sg~DL~~L~~~Aa~~av 744 (837)
| ..+.+.+++..+...+.
T Consensus 218 G-~~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 218 S-TPRIALRLLKRVRDFAD 235 (338)
T ss_dssp T-CHHHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHHH
Confidence 6 56788888887765543
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.78 E-value=1.2e-18 Score=193.46 Aligned_cols=220 Identities=19% Similarity=0.260 Sum_probs=159.3
Q ss_pred ccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEE
Q 003231 60 VLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLL 139 (837)
Q Consensus 60 vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ 139 (837)
.+..+.-.++|+++.++ +..|..|.+++..+++++++.+. ....+++|||+||+++++++||||+|++++++++.
T Consensus 40 ~~~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp -------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred hhcccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34456668999999998 99999999999999999988443 34567899999999999999999999999999999
Q ss_pred eeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCccccc
Q 003231 140 LDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRR 219 (837)
Q Consensus 140 ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (837)
++..++..+| .|
T Consensus 115 v~~~~l~~~~---~g----------------------------------------------------------------- 126 (355)
T 2qp9_X 115 VSSSDLVSKW---MG----------------------------------------------------------------- 126 (355)
T ss_dssp EEHHHHHSCC----------------------------------------------------------------------
T ss_pred eeHHHHhhhh---cc-----------------------------------------------------------------
Confidence 9887764322 11
Q ss_pred CCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHH
Q 003231 220 NASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLD 291 (837)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk 291 (837)
.....+..+|+.+..- .|.||||||||.+...+ .+..+.|-
T Consensus 127 ----------------------------~~~~~~~~~f~~a~~~---~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll 175 (355)
T 2qp9_X 127 ----------------------------ESEKLVKQLFAMAREN---KPSIIFIDQVDALTGTRGEGESEASRRIKTELL 175 (355)
T ss_dssp -----------------------------CHHHHHHHHHHHHHT---SSEEEEEECGGGGTC------CTHHHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHHc---CCeEEEEechHhhcccCCCCcchHHHHHHHHHH
Confidence 1112556677776654 89999999999965321 22333333
Q ss_pred HHHHhc---cCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 292 KLLKKL---SGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 292 ~~l~~l---~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
..++.+ ..+|+|||+ +|.+..+|++|.|||...|.|++|+.++|..||+.++.+...
T Consensus 176 ~~l~~~~~~~~~v~vI~a-----tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--------------- 235 (355)
T 2qp9_X 176 VQMNGVGNDSQGVLVLGA-----TNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS--------------- 235 (355)
T ss_dssp HHHHHCC---CCEEEEEE-----ESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB---------------
T ss_pred HHhhcccccCCCeEEEee-----cCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC---------------
Confidence 334322 468999998 677788999999999999999999999999999986532100
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhh
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLM 406 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~ 406 (837)
.-.+.+...|...+.+ +++.+|..++..|+..++.
T Consensus 236 ~~~~~~l~~la~~t~G---~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 236 VLTKEDYRTLGAMTEG---YSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp CCCHHHHHHHHHHTTT---CCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHH
Confidence 0012345566667766 7888888888888776664
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.77 E-value=1.6e-18 Score=187.92 Aligned_cols=240 Identities=15% Similarity=0.246 Sum_probs=177.3
Q ss_pred ccccccccccccccHHHHHHHHHHHHhhccccccc-ccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 65 DIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEIS-KHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 65 ~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
.-.++|+++.++ ++.|..|.+++-.+++++++. +++ ...+++|||+||+++++++||||||++.+++++.++..
T Consensus 9 ~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~ 83 (301)
T 3cf0_A 9 VPQVTWEDIGGL--EDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83 (301)
T ss_dssp CCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcC---CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence 346899999998 999999999999999998862 222 25678999999999999999999999999999999988
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
++..+| +|.+.+
T Consensus 84 ~l~~~~---~g~~~~----------------------------------------------------------------- 95 (301)
T 3cf0_A 84 ELLTMW---FGESEA----------------------------------------------------------------- 95 (301)
T ss_dssp HHHHHH---HTTCTT-----------------------------------------------------------------
T ss_pred HHHhhh---cCchHH-----------------------------------------------------------------
Confidence 776544 333211
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc-----------HHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS-----------QRFYNLLDK 292 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-----------~~~~~~lk~ 292 (837)
.+..+|+.+... .|.||||||||.+...+ .+..+.|-.
T Consensus 96 ----------------------------~~~~~f~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~ 144 (301)
T 3cf0_A 96 ----------------------------NVREIFDKARQA---APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 144 (301)
T ss_dssp ----------------------------HHHHHHHHHHHT---CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHhc---CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHH
Confidence 344466666554 89999999999976432 223344444
Q ss_pred HHHhc--cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 293 LLKKL--SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 293 ~l~~l--~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.++.+ ..+|+|||+ +|++..+|+++.| ||...|.|++|+.++|..||+.++.+. -
T Consensus 145 ~l~~~~~~~~v~vi~a-----tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~----------------~ 203 (301)
T 3cf0_A 145 EMDGMSTKKNVFIIGA-----TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS----------------P 203 (301)
T ss_dssp HHHSSCTTSSEEEEEE-----ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS----------------C
T ss_pred HhhcccCCCCEEEEEe-----cCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC----------------C
Confidence 44432 247999998 6777889999999 999999999999999999999765321 0
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCC------------cc---c--cCCceeecHHhHHHHHHH
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNED------------PE---Y--RNGKLVISSKSLSHGLSI 431 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~------------~~---~--~~~~~~i~~~~~~~~l~~ 431 (837)
...+++...|..++.+ +++++|..++..|+..++.+... +. . ......|++++|+.||..
T Consensus 204 ~~~~~~~~~la~~~~g---~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~ 280 (301)
T 3cf0_A 204 VAKDVDLEFLAKMTNG---FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 280 (301)
T ss_dssp BCSSCCHHHHHHTCSS---CCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTT
T ss_pred CCccchHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHH
Confidence 1245677788888877 89999999998887766543210 00 0 011246899999999984
Q ss_pred h
Q 003231 432 F 432 (837)
Q Consensus 432 ~ 432 (837)
.
T Consensus 281 ~ 281 (301)
T 3cf0_A 281 A 281 (301)
T ss_dssp C
T ss_pred c
Confidence 4
No 46
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=2.6e-18 Score=184.96 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=152.5
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCC-CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccccc-
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGG-LLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGED- 603 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~-~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s-~~~G~~- 603 (837)
|+|++++++.+...+..+..+..+.... ...++.++||+||||||||++|+++|+.++.+++.++|+++.. .++|..
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~ 96 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV 96 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGST
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccH
Confidence 8999999999998886643332221100 0135678999999999999999999999999999999998876 565543
Q ss_pred HHHHHHHHHHH-----HhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc------CCceEEEEEe--
Q 003231 604 EKNVRALFTLA-----AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR------NGERILVLAA-- 670 (837)
Q Consensus 604 e~~l~~lf~~A-----~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~------~~~~vlVIaT-- 670 (837)
...++.++..+ ....++||||||+|.+.+.....+.......+.+.|+..+++.... ...++++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~ 176 (310)
T 1ofh_A 97 DSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGA 176 (310)
T ss_dssp THHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCC
Confidence 34456655532 1123689999999999876543333333334567777777754211 1235778887
Q ss_pred --cCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHH----H-------HhhcC----CChhhHHHHHHHcC-------C
Q 003231 671 --TNRPFDLDEAIIRRFERRIMVGLPSAENREMILKT----L-------LAKEK----VEDLDFKELAAMTE-------G 726 (837)
Q Consensus 671 --TN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~----~-------l~~~~----~~d~dl~~LA~~t~-------G 726 (837)
++.+..+++++++||+..+.|+.|+.+++..|++. + +...+ +++..++.|+..+. +
T Consensus 177 ~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 256 (310)
T 1ofh_A 177 FQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTEN 256 (310)
T ss_dssp CSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCC
T ss_pred cccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccc
Confidence 45778899999999998899999999999999983 2 22222 36677777877762 3
Q ss_pred CCHHHHHHHHHHHHHHH
Q 003231 727 YSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 727 ~sg~DL~~L~~~Aa~~a 743 (837)
...+.+.++|..+...+
T Consensus 257 g~~R~l~~~l~~~~~~~ 273 (310)
T 1ofh_A 257 IGARRLHTVMERLMDKI 273 (310)
T ss_dssp CTTHHHHHHHHHHSHHH
T ss_pred cCcHHHHHHHHHHHHhh
Confidence 56778888877665543
No 47
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.77 E-value=2.5e-18 Score=188.01 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=163.1
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-+++|+++.++ +..|..|.+++..+++++++.+.. ...+++|||+||+++++++||||+|++.+++++.++..
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKGN---RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGCCTT---CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHHhcC---CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 4456899999998 999999999999999999885442 34578999999999999999999999999999999887
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
++..+|
T Consensus 86 ~l~~~~-------------------------------------------------------------------------- 91 (322)
T 3eie_A 86 DLVSKW-------------------------------------------------------------------------- 91 (322)
T ss_dssp HHHTTT--------------------------------------------------------------------------
T ss_pred HHhhcc--------------------------------------------------------------------------
Confidence 764322
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~ 295 (837)
.+.....+..+|+.+... +|.||||||||.+...+ .+..+.+-..+.
T Consensus 92 ----------------------~g~~~~~~~~~f~~a~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 92 ----------------------MGESEKLVKQLFAMAREN---KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp ----------------------GGGHHHHHHHHHHHHHHT---SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred ----------------------cchHHHHHHHHHHHHHhc---CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 122233566777777665 89999999999965432 123333333343
Q ss_pred h---ccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCC
Q 003231 296 K---LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAAND 372 (837)
Q Consensus 296 ~---l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~ 372 (837)
. ..++|+|||+ +|.+..+|++|.|||...|.|++|+.++|..||+.++.+.. . ...+
T Consensus 147 ~~~~~~~~v~vi~a-----tn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~----~-----------~~~~ 206 (322)
T 3eie_A 147 GVGNDSQGVLVLGA-----TNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP----C-----------VLTK 206 (322)
T ss_dssp GGGTSCCCEEEEEE-----ESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC----C-----------CCCH
T ss_pred cccccCCceEEEEe-----cCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC----C-----------CCCH
Confidence 2 2468999998 67788899999999999999999999999999998653210 0 0011
Q ss_pred CChhHHhhcccCCCCCChhhHHHHHHHHHHhhhh
Q 003231 373 LECDDLGSICQADTMVLSNYIEEIVVSAISHHLM 406 (837)
Q Consensus 373 ~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~ 406 (837)
.+...|...+.+ +++.+|..++..|...++.
T Consensus 207 ~~l~~la~~t~g---~sg~di~~l~~~a~~~a~r 237 (322)
T 3eie_A 207 EDYRTLGAMTEG---YSGSDIAVVVKDALMQPIR 237 (322)
T ss_dssp HHHHHHHHTTTT---CCHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHH
Confidence 244566667766 8888999888888666654
No 48
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.76 E-value=1.6e-18 Score=197.97 Aligned_cols=226 Identities=19% Similarity=0.280 Sum_probs=156.5
Q ss_pred HHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhh
Q 003231 52 IEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAH 131 (837)
Q Consensus 52 ~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~ 131 (837)
+++.+.+.++ .+.-.++|+++.++ +..|..|.+++..+++++++.. . ....+++|||+||+++++++||||+|+
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~--~-~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT--G-KRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp --------CB-CCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTTTS--G-GGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHhh--c-cCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4444444444 45668999999998 9999999999999999998843 2 235678999999999999999999999
Q ss_pred hh-CCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccC
Q 003231 132 FF-ESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEG 210 (837)
Q Consensus 132 ~~-~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (837)
++ +++++.++..++..+| .|.+.+
T Consensus 190 ~~~~~~~~~v~~~~l~~~~---~g~~~~---------------------------------------------------- 214 (444)
T 2zan_A 190 EANNSTFFSISSSDLVSKW---LGESEK---------------------------------------------------- 214 (444)
T ss_dssp HCCSSEEEEECCC------------CCC----------------------------------------------------
T ss_pred HcCCCCEEEEeHHHHHhhh---cchHHH----------------------------------------------------
Confidence 99 9999999988875433 121100
Q ss_pred CCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcH----H-
Q 003231 211 SSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQ----R- 285 (837)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~----~- 285 (837)
.+..+|+.+.. .+|.||||||||.+...+. +
T Consensus 215 -----------------------------------------~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~ 250 (444)
T 2zan_A 215 -----------------------------------------LVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEA 250 (444)
T ss_dssp -----------------------------------------THHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGG
T ss_pred -----------------------------------------HHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccH
Confidence 34556666655 4899999999999653321 1
Q ss_pred HHHHHHHHHHhc------cCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhccc
Q 003231 286 FYNLLDKLLKKL------SGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQD 359 (837)
Q Consensus 286 ~~~~lk~~l~~l------~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~ 359 (837)
...++..+|..+ .++|+|||+ +|++..+|++|.|||...|.|++|+.++|..||+.++.+.. ..
T Consensus 251 ~~~~~~~lL~~l~~~~~~~~~v~vI~a-----tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~----~~- 320 (444)
T 2zan_A 251 ARRIKTEFLVQMQGVGVDNDGILVLGA-----TNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ----NS- 320 (444)
T ss_dssp GHHHHHHHHTTTTCSSCCCSSCEEEEE-----ESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC----EE-
T ss_pred HHHHHHHHHHHHhCcccCCCCEEEEec-----CCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC----CC-
Confidence 122233334433 357999998 57788999999999999999999999999999998653210 00
Q ss_pred chhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhh
Q 003231 360 NKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHL 405 (837)
Q Consensus 360 n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l 405 (837)
-.+.+...|...+.+ +++.+|..++..|+-.++
T Consensus 321 ----------l~~~~l~~la~~t~G---~sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 321 ----------LTEADFQELGRKTDG---YSGADISIIVRDALMQPV 353 (444)
T ss_dssp ----------CCHHHHHHHHHHTTT---CCHHHHHHHHHHHHTHHH
T ss_pred ----------CCHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHH
Confidence 012344556666666 788888888777765554
No 49
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=182.91 Aligned_cols=244 Identities=17% Similarity=0.238 Sum_probs=169.2
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccc
Q 003231 67 KTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 67 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~ 146 (837)
+|+|+++.++ ++.|..|.+++..++++++..+... + ..+++|||+||+++++++|+||||+..+..++.++..++.
T Consensus 6 ~~~~~di~g~--~~~~~~l~~~i~~~~~~~~~l~~~~-l-~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~ 81 (274)
T 2x8a_A 6 NVTWADIGAL--EDIREELTMAILAPVRNPDQFKALG-L-VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELL 81 (274)
T ss_dssp ------CCHH--HHHHHHHHHHHTHHHHSHHHHHHTT-C-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTC
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcC-C-CCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHH
Confidence 6899999998 9999999999999999988744332 3 4456699999999999999999999999998888876653
Q ss_pred hhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccc
Q 003231 147 LKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSS 226 (837)
Q Consensus 147 ~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (837)
.+
T Consensus 82 ~~------------------------------------------------------------------------------ 83 (274)
T 2x8a_A 82 NM------------------------------------------------------------------------------ 83 (274)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 21
Q ss_pred ccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcH-----HHHHHHHHHHHhccC--
Q 003231 227 ISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQ-----RFYNLLDKLLKKLSG-- 299 (837)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~-----~~~~~lk~~l~~l~g-- 299 (837)
|..+....+..+|+-+... .|+|+||||+|.+...+. .....+...+..++|
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~---~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~ 142 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNS---APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE 142 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHT---CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC
T ss_pred ------------------hhhHHHHHHHHHHHHHHhc---CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc
Confidence 1111222455667666554 899999999998653221 111233445555555
Q ss_pred ---CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCC
Q 003231 300 ---SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLE 374 (837)
Q Consensus 300 ---~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~ 374 (837)
.++++++ +|++..+|+++.| ||...|.|++|+.++|..||+.++..... .....+++
T Consensus 143 ~~~~~i~ia~-----tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~-------------~~~~~~~~ 204 (274)
T 2x8a_A 143 ARQQVFIMAA-----TNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK-------------PPLDADVN 204 (274)
T ss_dssp STTCEEEEEE-----ESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT-------------TBBCTTCC
T ss_pred ccCCEEEEee-----cCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC-------------CCCccccC
Confidence 4667776 7888999999999 99999999999999999999986422110 11234567
Q ss_pred hhHHhhc--ccCCCCCChhhHHHHHHHHHHhhhhcCCC---ccccCCceeecHHhHHHHHHHhhh
Q 003231 375 CDDLGSI--CQADTMVLSNYIEEIVVSAISHHLMDNED---PEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 375 ~~dL~~~--~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~---~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
...|+.. |.+ |++++|..++..|+..++.+... .....+.+.|+++||+.|+..+++
T Consensus 205 ~~~la~~~~~~g---~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 205 LEAIAGDLRCDC---YTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp HHHHHTCSGGGS---CCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred HHHHHHhhccCC---cCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence 7777775 447 89999999999998877754211 111234567999999999985543
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.75 E-value=1e-18 Score=186.10 Aligned_cols=205 Identities=21% Similarity=0.231 Sum_probs=140.8
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccccc--
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGED-- 603 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~-- 603 (837)
.++|.+...+.+....... .+.+......++.++||+||||||||++|+++|..++.+|+.+++++. ++|..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~ 107 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSET 107 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHH
T ss_pred CCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchH
Confidence 3677777666655531110 011111123567899999999999999999999999999999988752 33333
Q ss_pred --HHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcH-H
Q 003231 604 --EKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDE-A 680 (837)
Q Consensus 604 --e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~-a 680 (837)
...++.+|..+....++||||||||.+++.+.... .....+++.|...+++.. ..+.+++||+|||.++.+++ .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~l~~L~~~~~~~~-~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP--RFSNLVLQALLVLLKKAP-PQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT--BCCHHHHHHHHHHTTCCC-STTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh--hHHHHHHHHHHHHhcCcc-CCCCCEEEEEecCChhhcchhh
Confidence 35678889888888889999999999976543211 112345555655565542 24457899999999988887 6
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCC----CHHHHHHHHHHHHH
Q 003231 681 IIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGY----SGSDLKNLCVTAAY 741 (837)
Q Consensus 681 L~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~----sg~DL~~L~~~Aa~ 741 (837)
+++||...+.+|.++ +|.+|...+.....+++.++..++..+.|| ..+++.+++..|..
T Consensus 185 l~~rf~~~i~~p~l~--~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 185 MLNAFSTTIHVPNIA--TGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp CTTTSSEEEECCCEE--EHHHHHHHHHHHTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred hhcccceEEcCCCcc--HHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 778997777775554 344454444444556888899999999987 56667666655543
No 51
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.74 E-value=1.6e-18 Score=192.55 Aligned_cols=221 Identities=21% Similarity=0.287 Sum_probs=153.9
Q ss_pred cccchHHHHHHHHHHHcccCCchhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc-ccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFK--GGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSK-WFGED 603 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~--~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~-~~G~~ 603 (837)
|+|++.+++.+..++.....+..... .....++.++||+||||||||++|+++|..++.+|+.++|+++... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 79999999999998854322211110 1112367789999999999999999999999999999999998754 77775
Q ss_pred -HHHHHHHHHHH----HhcCCeEEEecccccccCCCCCcc--hHHHHHHHHHHHHHhhccccc---------cCC-----
Q 003231 604 -EKNVRALFTLA----AKVSPTIIFVDEVDSMLGQRTRVG--EHEAMRKIKNEFMTHWDGLLT---------RNG----- 662 (837)
Q Consensus 604 -e~~l~~lf~~A----~~~~psVLfIDEID~L~~~r~~~~--~~~~~~~i~~~Ll~~ld~~~~---------~~~----- 662 (837)
...+..+|..+ ....++||||||||.+.+.+.... .......+.+.|+..|++... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55667777665 344578999999999987654432 222334578888888884311 011
Q ss_pred ---ceEEEEEecCCC----------CC-----------------------------------CcHHHHHHHHHhhhcCCC
Q 003231 663 ---ERILVLAATNRP----------FD-----------------------------------LDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 663 ---~~vlVIaTTN~~----------~~-----------------------------------Ld~aL~rRF~~~I~~~~P 694 (837)
.++++|+++|.. .. +.|+|++||+.++.|.+|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 223444444421 11 789999999999999999
Q ss_pred CHHHHHHHHHH----HHh-------hcC----CChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 003231 695 SAENREMILKT----LLA-------KEK----VEDLDFKELAAM--TEGYSGSDLKNLCVTAAYRPVREL 747 (837)
Q Consensus 695 ~~eer~~IL~~----~l~-------~~~----~~d~dl~~LA~~--t~G~sg~DL~~L~~~Aa~~av~r~ 747 (837)
+.+++.+|+.. ++. ..+ +++..++.|+.. ...+..++|++++..+...++.+.
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 99999999875 322 112 256677778764 234566889999888887776643
No 52
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.73 E-value=6e-18 Score=197.87 Aligned_cols=207 Identities=19% Similarity=0.261 Sum_probs=140.3
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-----
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS----- 597 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s----- 597 (837)
-.++++|++++++.+.+.+........ .+..+++|+||||||||++|+++|..++.+++.+++..+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~~-------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTKS-------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSSS-------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhccc-------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 345699999999999887754222211 15668999999999999999999999999999999877543
Q ss_pred ----ccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc-----------CC
Q 003231 598 ----KWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR-----------NG 662 (837)
Q Consensus 598 ----~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~-----------~~ 662 (837)
.++|.....+...|..+....| ||||||||.+.+.+.. ...+.|+..++..... +.
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4666666777777777765554 9999999999764321 2345566666543211 11
Q ss_pred ceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh-----cCC-------ChhhHHHHHHHcCC-CCH
Q 003231 663 ERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK-----EKV-------EDLDFKELAAMTEG-YSG 729 (837)
Q Consensus 663 ~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~-----~~~-------~d~dl~~LA~~t~G-~sg 729 (837)
.+++||+|||.++.+++++++|| .+|.|+.|+.+++..|++.++.. .++ ++..+..++..+.+ ...
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred cceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 45899999999999999999999 57899999999999999887622 222 45666777765553 344
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003231 730 SDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 730 ~DL~~L~~~Aa~~av~r 746 (837)
++|++.+..++..+..+
T Consensus 302 R~L~~~i~~~~~~aa~~ 318 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKA 318 (543)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66666665555544444
No 53
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=2.4e-16 Score=168.31 Aligned_cols=235 Identities=16% Similarity=0.279 Sum_probs=178.0
Q ss_pred ccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccc
Q 003231 65 DIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVND 144 (837)
Q Consensus 65 ~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~ 144 (837)
.-+++|++++++ +..+..|.+.+..+++++++.+... ...++.|||+||+++++++||||+|++++.+++.++..+
T Consensus 11 ~~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 86 (285)
T 3h4m_A 11 RPNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKVG--IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86 (285)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHC--CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHH
Confidence 346899999998 9999999999999999987733321 246778999999999999999999999999999988766
Q ss_pred cchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCc
Q 003231 145 FSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDM 224 (837)
Q Consensus 145 ~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (837)
+...+
T Consensus 87 ~~~~~--------------------------------------------------------------------------- 91 (285)
T 3h4m_A 87 LVKKF--------------------------------------------------------------------------- 91 (285)
T ss_dssp GCCCS---------------------------------------------------------------------------
T ss_pred HHHhc---------------------------------------------------------------------------
Confidence 64211
Q ss_pred ccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhh--------cHHHHHHHHHHHHh
Q 003231 225 SSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQ--------SQRFYNLLDKLLKK 296 (837)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~--------~~~~~~~lk~~l~~ 296 (837)
.+...-.+..+|+.+.. ..|.||||||+|.+... ..+....+...|..
T Consensus 92 ---------------------~~~~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 147 (285)
T 3h4m_A 92 ---------------------IGEGASLVKDIFKLAKE---KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE 147 (285)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHH---TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH
T ss_pred ---------------------cchHHHHHHHHHHHHHH---cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH
Confidence 11112244556665554 48999999999997532 22233333344443
Q ss_pred c-----cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhh
Q 003231 297 L-----SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLA 369 (837)
Q Consensus 297 l-----~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~ 369 (837)
+ .+++++||+ +|....+|+++.| ||...|.+++|+.++|.+||+.++.. ...
T Consensus 148 ~~~~~~~~~~~vI~t-----tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~----------------~~~ 206 (285)
T 3h4m_A 148 MDGFDARGDVKIIGA-----TNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK----------------MNL 206 (285)
T ss_dssp HHTTCSSSSEEEEEE-----CSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT----------------SCB
T ss_pred hhCCCCCCCEEEEEe-----CCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc----------------CCC
Confidence 2 358999998 5677889999999 99999999999999999999975321 111
Q ss_pred cCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 370 ANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 370 ~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
..+.+...|...+.. +++.+|..++..|..+++.+... .|+.++|..++..+..
T Consensus 207 ~~~~~~~~l~~~~~g---~~~~~i~~l~~~a~~~a~~~~~~--------~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 207 AEDVNLEEIAKMTEG---CVGAELKAICTEAGMNAIRELRD--------YVTMDDFRKAVEKIME 260 (285)
T ss_dssp CTTCCHHHHHHHCTT---CCHHHHHHHHHHHHHHHHHTTCS--------SBCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhccC--------cCCHHHHHHHHHHHHh
Confidence 235677888888888 89999999999999999875532 3899999999986654
No 54
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.72 E-value=8.3e-17 Score=183.61 Aligned_cols=198 Identities=16% Similarity=0.276 Sum_probs=135.4
Q ss_pred Cccccccc-cchH--HHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 003231 521 GVTFADIG-ALNE--IKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSM 592 (837)
Q Consensus 521 ~v~fddIi-G~d~--vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~ 592 (837)
..+|++++ |..+ +...+..++..+ + . ..+++|+||||||||+||+++|+.+ +.+++.+++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 35899977 6443 334444433321 1 2 5689999999999999999999988 889999999
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecC
Q 003231 593 STITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATN 672 (837)
Q Consensus 593 s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN 672 (837)
.++...+.+.........|.......+.||||||++.+.+.+ ...+.|+..++.... ....+||+|.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~----------~~q~~l~~~l~~l~~--~~~~iIitt~~ 236 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT----------GVQTELFHTFNELHD--SGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH----------HHHHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh----------HHHHHHHHHHHHHHH--CCCeEEEEECC
Confidence 887554433222211123333333367999999999986421 112223333332221 22355565555
Q ss_pred CCCC---CcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003231 673 RPFD---LDEAIIRRFE--RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 673 ~~~~---Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
.+.. +++.+++||. ..+.++.|+.++|..|++..+...++ ++..+..|+..+.| +.+++.+++..+...+
T Consensus 237 ~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 237 EPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 5554 8899999996 68899999999999999999876554 67778999999886 7888988887776654
No 55
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.71 E-value=5.5e-17 Score=185.23 Aligned_cols=191 Identities=28% Similarity=0.401 Sum_probs=142.3
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHH---HHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIK---ESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIA 580 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk---~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA 580 (837)
..|..++++. +|++++|++.++ ..|...+... ...++||+||||||||++|+++|
T Consensus 14 ~pla~r~rP~---------~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 14 QPLAARMRPE---------NLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp CCHHHHTCCC---------STTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CChHHHhCCC---------CHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHH
Confidence 4678888877 899999999999 7777777541 23689999999999999999999
Q ss_pred HHhCCcEEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcc
Q 003231 581 NEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDG 656 (837)
Q Consensus 581 ~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~ 656 (837)
+.++.+|+.+++... ....++.++..+.. ..++||||||||.+... ..+.|+..++.
T Consensus 72 ~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~ 132 (447)
T 3pvs_A 72 RYANADVERISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED 132 (447)
T ss_dssp HHTTCEEEEEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT
T ss_pred HHhCCCeEEEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc
Confidence 999999999987542 23445566665543 35799999999998532 22344554443
Q ss_pred ccccCCceEEEEEec--CCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh-------cC--CChhhHHHHHHHcC
Q 003231 657 LLTRNGERILVLAAT--NRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK-------EK--VEDLDFKELAAMTE 725 (837)
Q Consensus 657 ~~~~~~~~vlVIaTT--N~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~-------~~--~~d~dl~~LA~~t~ 725 (837)
..+++|++| |....+++++++|| .++.++.|+.+++..+++..+.. .. +++..++.|+..+.
T Consensus 133 ------~~v~lI~att~n~~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~ 205 (447)
T 3pvs_A 133 ------GTITFIGATTENPSFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVN 205 (447)
T ss_dssp ------TSCEEEEEESSCGGGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHC
T ss_pred ------CceEEEecCCCCcccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCC
Confidence 224555544 44568999999999 57889999999999999999876 22 37778899999987
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 003231 726 GYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 726 G~sg~DL~~L~~~Aa~~a 743 (837)
| ..+.+.+++..|+..+
T Consensus 206 G-d~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 206 G-DARRALNTLEMMADMA 222 (447)
T ss_dssp S-CHHHHHHHHHHHHHHS
T ss_pred C-CHHHHHHHHHHHHHhc
Confidence 6 5677778877666543
No 56
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=2.6e-17 Score=178.80 Aligned_cols=193 Identities=21% Similarity=0.261 Sum_probs=143.0
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccc
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGE 602 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~ 602 (837)
+|++++|.+.+++.+..++...... ..++.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~----- 76 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK----- 76 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-----
Confidence 7999999999999998888642110 024578999999999999999999999999999999887632
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc--------------CCceEEEE
Q 003231 603 DEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR--------------NGERILVL 668 (837)
Q Consensus 603 ~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~--------------~~~~vlVI 668 (837)
...+...+..+ ...+++|||||++.+.. .....++..++..... ...++++|
T Consensus 77 -~~~l~~~l~~~-~~~~~~l~lDEi~~l~~------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 77 -PGDLAAILANS-LEEGDILFIDEIHRLSR------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -HHHHHHHHTTT-CCTTCEEEETTTTSCCH------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -hHHHHHHHHHh-ccCCCEEEEECCccccc------------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 22222222221 13578999999998842 1223333333322100 11247899
Q ss_pred EecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003231 669 AATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 669 aTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
++||.+..+++++++||+..+.++.|+.+++..+++.++...+. ++..+..|+..+.|+ ++.+.+++..+...+
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 99999999999999999878999999999999999999876554 777889999998764 578888887765444
No 57
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.71 E-value=5.3e-16 Score=157.09 Aligned_cols=189 Identities=23% Similarity=0.250 Sum_probs=136.2
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA- 583 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el- 583 (837)
.|..++++. .|++++|.+++++.+..++... ...+++|+||||||||++|+++++.+
T Consensus 6 ~~~~~~~p~---------~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 6 IWVEKYRPR---------TLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CHHHHTSCS---------SGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hHHHhcCCC---------CHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 455666555 7899999999999999888641 23359999999999999999999986
Q ss_pred ----CCcEEEEeccccccccccccHHHHHHHHHHHH------hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHh
Q 003231 584 ----GASFINVSMSTITSKWFGEDEKNVRALFTLAA------KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTH 653 (837)
Q Consensus 584 ----g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~------~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ 653 (837)
...++.++++..... ..+...+.... ...+.+|||||+|.+.+ ...+.++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~ 125 (226)
T 2chg_A 64 GENWRDNFIEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRT 125 (226)
T ss_dssp GGGGGGGEEEEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------HHHHHHHHH
T ss_pred ccccccceEEeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------HHHHHHHHH
Confidence 466888887654321 22222222222 24578999999998843 122334444
Q ss_pred hccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHH
Q 003231 654 WDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSD 731 (837)
Q Consensus 654 ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~D 731 (837)
++.. ..++.+|++||.+..+++.+.+||. .+.++.|+.+++..+++.++...+. ++..+..++..+.| ..+.
T Consensus 126 l~~~----~~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~ 199 (226)
T 2chg_A 126 MEMY----SKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRK 199 (226)
T ss_dssp HHHT----TTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHH
T ss_pred HHhc----CCCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 4432 2347888899999999999999995 8899999999999999998876554 67778888888876 4455
Q ss_pred HHHHHHHH
Q 003231 732 LKNLCVTA 739 (837)
Q Consensus 732 L~~L~~~A 739 (837)
+.+++..+
T Consensus 200 l~~~l~~~ 207 (226)
T 2chg_A 200 AINALQGA 207 (226)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.70 E-value=7.6e-17 Score=174.07 Aligned_cols=204 Identities=16% Similarity=0.244 Sum_probs=149.0
Q ss_pred cccchHHHHHHHHHHHccc---CCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc--
Q 003231 527 IGALNEIKESLQELVMLPL---RRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK-- 598 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l---~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~-- 598 (837)
++|++.+++.+...+.... ..+ .+|..++||+||||||||++|+++|..+ +.+++.++|+.+...
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDP-------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCT-------TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 8999999999998886531 222 2456689999999999999999999998 667999999876542
Q ss_pred ---cccccHH-----HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCC-------c
Q 003231 599 ---WFGEDEK-----NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNG-------E 663 (837)
Q Consensus 599 ---~~G~~e~-----~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-------~ 663 (837)
++|.... ....+.......+++||||||+|.+.+ .+.+.|+..++....... .
T Consensus 92 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------------~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP------------DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH------------HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH------------HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 1221100 001233344455669999999998842 445566666654332211 3
Q ss_pred eEEEEEecCC--------------------------CCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc-------
Q 003231 664 RILVLAATNR--------------------------PFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE------- 710 (837)
Q Consensus 664 ~vlVIaTTN~--------------------------~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~------- 710 (837)
++++|+|||. ...+++++++||+..+.+++|+.+++..|++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 5779999998 4468899999999899999999999999999877652
Q ss_pred --C--CChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHH
Q 003231 711 --K--VEDLDFKELAAMTE--GYSGSDLKNLCVTAAYRPVRELIQ 749 (837)
Q Consensus 711 --~--~~d~dl~~LA~~t~--G~sg~DL~~L~~~Aa~~av~r~~~ 749 (837)
. +++..++.|+...- ....++|++++..+...++.+.+.
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred CcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 26777888888654 567899999999998888776543
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.70 E-value=1.4e-17 Score=191.34 Aligned_cols=182 Identities=21% Similarity=0.322 Sum_probs=133.6
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.|++|+|++..++.+...+.. ....++||+||||||||++|+++|..+ +.+|+.+++
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 788999999999998888754 234689999999999999999999997 788999998
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecC
Q 003231 593 STITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATN 672 (837)
Q Consensus 593 s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN 672 (837)
+ ..+.|..+..++.+|..+....++||||| +. . ...+.|+..+. ...+.+|++||
T Consensus 245 ~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~------~----~a~~~L~~~L~------~g~v~vI~at~ 299 (468)
T 3pxg_A 245 G---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA------I----DASNILKPSLA------RGELQCIGATT 299 (468)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT------SSSCEEEEECC
T ss_pred C---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc------h----hHHHHHHHhhc------CCCEEEEecCC
Confidence 8 66778878889999999998889999999 10 0 12233333332 23588999999
Q ss_pred CCC-----CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh----cCC--ChhhHHHHHHHcCCCC-----HHHHHHHH
Q 003231 673 RPF-----DLDEAIIRRFERRIMVGLPSAENREMILKTLLAK----EKV--EDLDFKELAAMTEGYS-----GSDLKNLC 736 (837)
Q Consensus 673 ~~~-----~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~----~~~--~d~dl~~LA~~t~G~s-----g~DL~~L~ 736 (837)
.+. .+++++++||. .+.|+.|+.+++..|++.++.. +++ ++..+..++..+.+|. +.....++
T Consensus 300 ~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 300 LDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp TTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHH
Confidence 876 68999999995 6999999999999999988765 333 7777888888776554 34677777
Q ss_pred HHHHHHH
Q 003231 737 VTAAYRP 743 (837)
Q Consensus 737 ~~Aa~~a 743 (837)
..|+..+
T Consensus 379 ~~a~~~~ 385 (468)
T 3pxg_A 379 DEAGSKV 385 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
No 60
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.69 E-value=2.6e-16 Score=181.43 Aligned_cols=241 Identities=15% Similarity=0.263 Sum_probs=178.8
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccc
Q 003231 67 KTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 67 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~ 146 (837)
.++|+++.+. +..+..|.+.+...++++++.+... ...+++|||+||+++++++||||+|++++++|+.++..++.
T Consensus 200 ~~~~~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g--~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 200 EVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCCGGGCCSC--HHHHHHHHHHTHHHHHCHHHHHHHT--CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCCHHHcCCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 4689999997 9999999999999999988743321 35678899999999999999999999999999999987775
Q ss_pred hhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccc
Q 003231 147 LKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSS 226 (837)
Q Consensus 147 ~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (837)
.++ +|
T Consensus 276 ~~~---~g------------------------------------------------------------------------ 280 (489)
T 3hu3_A 276 SKL---AG------------------------------------------------------------------------ 280 (489)
T ss_dssp TSC---TT------------------------------------------------------------------------
T ss_pred hhh---cc------------------------------------------------------------------------
Confidence 322 01
Q ss_pred ccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHHhc-
Q 003231 227 ISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLKKL- 297 (837)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~~l- 297 (837)
...-.+..+|+-+.. ..|.||||||||.+...+ .+..+.|-..|+.+
T Consensus 281 ---------------------~~~~~~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 281 ---------------------ESESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp ---------------------HHHHHHHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred ---------------------hhHHHHHHHHHHHHh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc
Confidence 111133445555544 489999999999966432 13334444444432
Q ss_pred -cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCC
Q 003231 298 -SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLE 374 (837)
Q Consensus 298 -~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~ 374 (837)
.++|+||++ +|++..+|++|.| ||...|.|++|+.++|..||+.++.. .....+.+
T Consensus 337 ~~~~v~vIaa-----Tn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~----------------~~l~~~~~ 395 (489)
T 3hu3_A 337 QRAHVIVMAA-----TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN----------------MKLADDVD 395 (489)
T ss_dssp TTSCEEEEEE-----ESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT----------------SCBCTTCC
T ss_pred cCCceEEEEe-----cCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc----------------CCCcchhh
Confidence 358999998 6777889999998 99999999999999999999975421 11234566
Q ss_pred hhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCcc-cc--------CCceeecHHhHHHHHHHhhh
Q 003231 375 CDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPE-YR--------NGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 375 ~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~-~~--------~~~~~i~~~~~~~~l~~~~~ 434 (837)
..+|...+.. +++.+|..++..|+..++.+..+.. .. ...+.|++++|+.|+..+++
T Consensus 396 l~~la~~t~g---~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~p 461 (489)
T 3hu3_A 396 LEQVANETHG---HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (489)
T ss_dssp HHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHH
T ss_pred HHHHHHHccC---CcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCc
Confidence 7888888888 9999999999999888877543211 00 12346899999999985544
No 61
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.69 E-value=2.3e-16 Score=178.66 Aligned_cols=179 Identities=26% Similarity=0.351 Sum_probs=134.0
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCC-CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccc-
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLL-KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITS-KWFGE- 602 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~-~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s-~~~G~- 602 (837)
+|+|++++|+.|..++..+.+++.++..... .+++++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 4899999999999999887777666554322 35688999999999999999999999999999999999888 48885
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 003231 603 DEKNVRALFTLAA------------------------------------------------------------------- 615 (837)
Q Consensus 603 ~e~~l~~lf~~A~------------------------------------------------------------------- 615 (837)
.+..++.+|..+.
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 5666666655441
Q ss_pred -----------------------------------------------------------------------h-cCCeEEE
Q 003231 616 -----------------------------------------------------------------------K-VSPTIIF 623 (837)
Q Consensus 616 -----------------------------------------------------------------------~-~~psVLf 623 (837)
+ .+.+|||
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 0 0235899
Q ss_pred ecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc------CCceEEEEEec----CCCCCCcHHHHHHHHHhhhcCC
Q 003231 624 VDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR------NGERILVLAAT----NRPFDLDEAIIRRFERRIMVGL 693 (837)
Q Consensus 624 IDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~------~~~~vlVIaTT----N~~~~Ld~aL~rRF~~~I~~~~ 693 (837)
+||||++.....+.+..-...-+.+.|+..+++.... +..++++|||. +.+.++-|+|++||+.++.|+.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 9999999865432222222334677888888874221 33568999887 3445566999999998899999
Q ss_pred CCHHHHHHHHH
Q 003231 694 PSAENREMILK 704 (837)
Q Consensus 694 P~~eer~~IL~ 704 (837)
++.++...|+.
T Consensus 336 lt~~e~~~Il~ 346 (444)
T 1g41_A 336 LSAADFERILT 346 (444)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999983
No 62
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.69 E-value=1.4e-15 Score=168.85 Aligned_cols=255 Identities=13% Similarity=0.201 Sum_probs=177.8
Q ss_pred HHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhh
Q 003231 52 IEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAH 131 (837)
Q Consensus 52 ~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~ 131 (837)
+-+.+.+.+++. .-.++|+++-+. +..+..|.+.+..+++++++.+ .+...++.|||+||+++++++||||+|+
T Consensus 66 ~~~~i~~~i~~~-~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 66 MIELIMNEIMDH-GPPVNWEDIAGV--EFAKATIKEIVVWPMLRPDIFT---GLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp HHHHHHHHTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHhhcccC-CCCCCHHHhCCh--HHHHHHHHHHHHHHhhChHhHh---hccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 334455666654 347899999987 9999999999999999988733 2346788999999999999999999999
Q ss_pred hhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCC
Q 003231 132 FFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGS 211 (837)
Q Consensus 132 ~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (837)
+++.+++.++.+++..++
T Consensus 140 ~~~~~~~~i~~~~l~~~~-------------------------------------------------------------- 157 (357)
T 3d8b_A 140 QSGATFFSISASSLTSKW-------------------------------------------------------------- 157 (357)
T ss_dssp HTTCEEEEEEGGGGCCSS--------------------------------------------------------------
T ss_pred HcCCeEEEEehHHhhccc--------------------------------------------------------------
Confidence 999999999887764321
Q ss_pred CCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------
Q 003231 212 SFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS-------- 283 (837)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-------- 283 (837)
.+.....+..+|..+.. .+|.||||||||.+...+
T Consensus 158 ----------------------------------~g~~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~ 200 (357)
T 3d8b_A 158 ----------------------------------VGEGEKMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESS 200 (357)
T ss_dssp ----------------------------------TTHHHHHHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHH
T ss_pred ----------------------------------cchHHHHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHH
Confidence 11112245566766655 389999999999965432
Q ss_pred HHHHHHHHHHHHh----ccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhccc
Q 003231 284 QRFYNLLDKLLKK----LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQD 359 (837)
Q Consensus 284 ~~~~~~lk~~l~~----l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~ 359 (837)
.+..+.|...+.. ...+|+|||+ +|...++|+++.|||...+.|++|+.++|..||+.++.... ..
T Consensus 201 ~~~~~~lL~~l~~~~~~~~~~v~vI~a-----tn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~----~~- 270 (357)
T 3d8b_A 201 RRIKTEFLVQLDGATTSSEDRILVVGA-----TNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ----CC- 270 (357)
T ss_dssp HHHHHHHHHHHHC----CCCCEEEEEE-----ESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC----BC-
T ss_pred HHHHHHHHHHHhcccccCCCCEEEEEe-----cCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC----CC-
Confidence 1233333333332 2358999998 56678899999999999999999999999999997653210 00
Q ss_pred chhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCcc----ccCCceeecHHhHHHHHHHhhh
Q 003231 360 NKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPE----YRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 360 n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~----~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
+ .+..+..|...+.. +++.+|..++..|.-.++..-.... ...+...|+.++|+.++..+++
T Consensus 271 -l---------~~~~l~~la~~t~G---~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 271 -L---------SEEEIEQIVQQSDA---FSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp -C---------CHHHHHHHHHHTTT---CCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred -c---------cHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 0 01234445555655 7778888887777666554221100 1122346999999999986654
No 63
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=3.3e-16 Score=170.68 Aligned_cols=193 Identities=21% Similarity=0.201 Sum_probs=141.7
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...|..+++|. +|++++|++++++.+..++... +.++.+|++||||||||++|+++|++
T Consensus 13 ~~~~~~k~rP~---------~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 13 EHILEQKYRPS---------TIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp CSSHHHHSCCC---------STTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred cchHHHhhCCC---------CHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 45688899887 8999999999999999988741 34567888999999999999999999
Q ss_pred hCCcEEEEeccccccccccccHHHHHHHHHHHHhc-----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccc
Q 003231 583 AGASFINVSMSTITSKWFGEDEKNVRALFTLAAKV-----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL 657 (837)
Q Consensus 583 lg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~-----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~ 657 (837)
++.+++.+++++.. ...++..+...... .+.||||||+|.+.+ . ...+.|+..++..
T Consensus 72 l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------~----~~~~~L~~~le~~ 133 (324)
T 3u61_B 72 VNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------A----ESQRHLRSFMEAY 133 (324)
T ss_dssp TTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------H----HHHHHHHHHHHHH
T ss_pred hCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------H----HHHHHHHHHHHhC
Confidence 99999999987632 33444444443322 468999999999841 1 2233444444432
Q ss_pred cccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHH-------HhhcCC--Ch-hhHHHHHHHcCCC
Q 003231 658 LTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTL-------LAKEKV--ED-LDFKELAAMTEGY 727 (837)
Q Consensus 658 ~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~-------l~~~~~--~d-~dl~~LA~~t~G~ 727 (837)
..++.+|+|||.+..+++++++|| ..+.|+.|+.+++..|++.+ +...++ ++ ..++.++..+.|.
T Consensus 134 ----~~~~~iI~~~n~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd 208 (324)
T 3u61_B 134 ----SSNCSIIITANNIDGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD 208 (324)
T ss_dssp ----GGGCEEEEEESSGGGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC
T ss_pred ----CCCcEEEEEeCCccccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC
Confidence 234788889999999999999999 57999999999876665443 333444 56 7788899988775
Q ss_pred CHHHHHHHHHHHH
Q 003231 728 SGSDLKNLCVTAA 740 (837)
Q Consensus 728 sg~DL~~L~~~Aa 740 (837)
.. ++.+.+..++
T Consensus 209 ~R-~a~~~L~~~~ 220 (324)
T 3u61_B 209 FR-KTIGELDSYS 220 (324)
T ss_dssp TT-HHHHHHHHHG
T ss_pred HH-HHHHHHHHHh
Confidence 44 4445554443
No 64
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.68 E-value=1.1e-15 Score=156.43 Aligned_cols=191 Identities=23% Similarity=0.315 Sum_probs=138.9
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|..++++. .|++++|.+..++.|..++... +.+..++|+||||+|||++|+++++.+
T Consensus 11 ~~~~~~~~p~---------~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 11 QVLARKWRPQ---------TFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CCHHHHTCCC---------SGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhhccCCc---------cHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456666665 7889999999999999888641 234579999999999999999999987
Q ss_pred CCc------------------------EEEEeccccccccccccHHHHHHHHHHHH----hcCCeEEEecccccccCCCC
Q 003231 584 GAS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAA----KVSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 584 g~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~----~~~psVLfIDEID~L~~~r~ 635 (837)
+.. ++.++... ......++.++..+. ...+.+|||||+|.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~--- 140 (250)
T 1njg_A 70 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--- 140 (250)
T ss_dssp HCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---
T ss_pred cCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH---
Confidence 432 22222211 012233445554432 22478999999998732
Q ss_pred CcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C
Q 003231 636 RVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E 713 (837)
Q Consensus 636 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~ 713 (837)
...+.++..++.. ..++.+|++||.+..+++.+++|+ ..+.++.|+.++..++++.++...+. +
T Consensus 141 ---------~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~ 206 (250)
T 1njg_A 141 ---------HSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHE 206 (250)
T ss_dssp ---------HHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBC
T ss_pred ---------HHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 2334455555432 345788888998889999999997 78899999999999999999877654 6
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 714 DLDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 714 d~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
+..++.++..+.| .++.+.+++..|
T Consensus 207 ~~~~~~l~~~~~G-~~~~~~~~~~~~ 231 (250)
T 1njg_A 207 PRALQLLARAAEG-SLRDALSLTDQA 231 (250)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7778899999987 677888887655
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.67 E-value=1.9e-15 Score=155.78 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=128.9
Q ss_pred cccccccc---chHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 003231 522 VTFADIGA---LNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTI 595 (837)
Q Consensus 522 v~fddIiG---~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l 595 (837)
.+|++++| ...+.+.+..++.. ....+++|+||||||||++|++++.++ +.+++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 47888886 24666777666643 245789999999999999999999887 478899999887
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceE-EEEEecCCC
Q 003231 596 TSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERI-LVLAATNRP 674 (837)
Q Consensus 596 ~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~v-lVIaTTN~~ 674 (837)
....... +.. ...+.+|||||++.+.... .....++..++...... .+ +|++++..+
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~----------~~~~~l~~~l~~~~~~~--~~~ii~~~~~~~ 149 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGHP----------LWEEAIFDLYNRVAEQK--RGSLIVSASASP 149 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH----------HHHHHHHHHHHHHHHHC--SCEEEEEESSCT
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCCH----------HHHHHHHHHHHHHHHcC--CCeEEEEcCCCH
Confidence 6543211 111 1346899999999885421 01122333333221111 23 444444444
Q ss_pred C---CCcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 003231 675 F---DLDEAIIRRFE--RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 675 ~---~Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~a 743 (837)
. .+.+.+.+||. ..+.++.|+.+++.++++.++...+. ++..++.++..+.| +.+++.+++..+...+
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 3 45689999996 78899999999999999999886654 77788899998876 6788888887766654
No 66
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.67 E-value=1.4e-15 Score=168.09 Aligned_cols=201 Identities=17% Similarity=0.139 Sum_probs=141.4
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccc
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---------GASFINVSMSTI 595 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---------g~~~i~v~~s~l 595 (837)
++++|.+..++.+..++...+.. ..+.+++|+||||||||++|+++++.+ +.+++.++|...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 57999999999998877542211 346789999999999999999999988 889999998764
Q ss_pred cccc----------------ccccH-HHHHHHHHHHHhc-CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccc
Q 003231 596 TSKW----------------FGEDE-KNVRALFTLAAKV-SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL 657 (837)
Q Consensus 596 ~s~~----------------~G~~e-~~l~~lf~~A~~~-~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~ 657 (837)
.+.. .|... ..+..++...... .+.||||||+|.+...+ .....+..++..+...
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQEL 162 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhc
Confidence 3321 12222 2244444444333 37899999999985421 0123344444433322
Q ss_pred cccCCceEEEEEecCCC---CCCcHHHHHHHHH-hhhcCCCCHHHHHHHHHHHHhh----cCCChhhHHHHHHHcC---C
Q 003231 658 LTRNGERILVLAATNRP---FDLDEAIIRRFER-RIMVGLPSAENREMILKTLLAK----EKVEDLDFKELAAMTE---G 726 (837)
Q Consensus 658 ~~~~~~~vlVIaTTN~~---~~Ld~aL~rRF~~-~I~~~~P~~eer~~IL~~~l~~----~~~~d~dl~~LA~~t~---G 726 (837)
.. +.++.+|++||.+ ..+++.+.+||.. .+.|+.|+.+++..|++..+.. ..+++..++.++..+. |
T Consensus 163 ~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 240 (387)
T 2v1u_A 163 GD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG 240 (387)
T ss_dssp -------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC
T ss_pred CC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc
Confidence 10 3468899999887 7889999999975 8999999999999999998864 2336777888888887 6
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 003231 727 YSGSDLKNLCVTAAYRPV 744 (837)
Q Consensus 727 ~sg~DL~~L~~~Aa~~av 744 (837)
..+.+.++|..|+..+.
T Consensus 241 -~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 241 -DARRALDLLRVAGEIAE 257 (387)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 46677888888876554
No 67
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.67 E-value=1.1e-15 Score=166.69 Aligned_cols=195 Identities=22% Similarity=0.270 Sum_probs=134.9
Q ss_pred Cccccccc-cc--hHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 003231 521 GVTFADIG-AL--NEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMST 594 (837)
Q Consensus 521 ~v~fddIi-G~--d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~ 594 (837)
..+|++++ |. ..+...+..++..+ . ....+++|+||||||||++|+++++.+ +.+++.+++.+
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~----~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL----G-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT----T-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc----C-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 45788886 43 34455555555432 1 245789999999999999999999998 89999999988
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC
Q 003231 595 ITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP 674 (837)
Q Consensus 595 l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~ 674 (837)
+...+.+.........|..... .++||||||++.+.+.+ ...+.++..++.... ....+|+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~----------~~~~~l~~~l~~~~~--~~~~iii~~~~~~ 142 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE----------RTQIEFFHIFNTLYL--LEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH----------HHHHHHHHHHHHHHH--TTCEEEEEESSCG
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh----------HHHHHHHHHHHHHHH--CCCeEEEEecCCh
Confidence 7655444332222223333332 47899999999985421 111222222222211 1235667777776
Q ss_pred C---CCcHHHHHHHH--HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003231 675 F---DLDEAIIRRFE--RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 675 ~---~Ld~aL~rRF~--~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
. .+++++++||. ..+.+++ +.+++..|++..+...++ ++..++.|+..+ | ..+++.+++..+...
T Consensus 143 ~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 143 QKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 5 68999999996 5678888 999999999999886654 778899999999 5 677888888776655
No 68
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.67 E-value=7.2e-16 Score=162.09 Aligned_cols=233 Identities=17% Similarity=0.208 Sum_probs=155.6
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcccccc-cccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 67 KTTFDEFPYYLSERTRMLLTSAAYVHLKHSEI-SKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 67 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
+++|+++-++ ++.|..|.+.+.. +++++. ..++ ...++.|||+||+++++++||||+|++.+.+++.++..++
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~ 75 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPERFLQLG---AKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEF 75 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC---------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTT
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHHcC---CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 5899999998 9999999887765 555543 2332 2567889999999999999999999999999999988776
Q ss_pred chhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcc
Q 003231 146 SLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMS 225 (837)
Q Consensus 146 ~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (837)
...+ +.
T Consensus 76 ~~~~----~~---------------------------------------------------------------------- 81 (262)
T 2qz4_A 76 VEVI----GG---------------------------------------------------------------------- 81 (262)
T ss_dssp SSSS----TT----------------------------------------------------------------------
T ss_pred Hhhc----cC----------------------------------------------------------------------
Confidence 4211 00
Q ss_pred cccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc---------HHHHHHHHHHHHh
Q 003231 226 SISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS---------QRFYNLLDKLLKK 296 (837)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~---------~~~~~~lk~~l~~ 296 (837)
...-.+..+|+.+.. ..|.||||||+|.+...+ .+....+..+|..
T Consensus 82 ----------------------~~~~~~~~~~~~a~~---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 136 (262)
T 2qz4_A 82 ----------------------LGAARVRSLFKEARA---RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE 136 (262)
T ss_dssp ----------------------HHHHHHHHHHHHHHH---TCSEEEEEECC-------------------CHHHHHHHHH
T ss_pred ----------------------hhHHHHHHHHHHHHh---cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHH
Confidence 001133445555544 379999999999965432 1122223333333
Q ss_pred c-----cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhh
Q 003231 297 L-----SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLA 369 (837)
Q Consensus 297 l-----~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~ 369 (837)
+ ..++++||+ +|....+|+++.| ||...+.|++|+.++|..||+.++.+.. ....
T Consensus 137 ~~~~~~~~~~~vi~~-----tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~----~~~~--------- 198 (262)
T 2qz4_A 137 MDGMGTTDHVIVLAS-----TNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK----LTQS--------- 198 (262)
T ss_dssp HHTCCTTCCEEEEEE-----ESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT----CCBT---------
T ss_pred hhCcCCCCCEEEEec-----CCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC----CCcc---------
Confidence 2 247889987 5667789999999 9999999999999999999998764321 1100
Q ss_pred cCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhh
Q 003231 370 ANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 370 ~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
.++.+..|...+.. +++.+|..++..|+.+++.+.. -.|+.++|+.++..+..
T Consensus 199 -~~~~~~~l~~~~~g---~~~~~l~~l~~~a~~~a~~~~~--------~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 199 -STFYSQRLAELTPG---FSGADIANICNEAALHAAREGH--------TSVHTLNFEYAVERVLA 251 (262)
T ss_dssp -HHHHHHHHHHTCTT---CCHHHHHHHHHHHHTC----------------CCBCCHHHHHHHHHH
T ss_pred -hhhHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHcCC--------CCCCHHHHHHHHHHhcc
Confidence 11234567777777 8999999999999888765432 34888999999986654
No 69
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.67 E-value=1.8e-15 Score=162.65 Aligned_cols=254 Identities=16% Similarity=0.244 Sum_probs=178.1
Q ss_pred HHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhh
Q 003231 52 IEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAH 131 (837)
Q Consensus 52 ~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~ 131 (837)
+.+.+.+.+++. .-.++|++|.++ +..+..|.+++..++.++++.. .+...++.|||+||+++++++||||+|+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 3 LVQLILDEIVEG-GAKVEWTDIAGQ--DVAKQALQEMVILPSVRPELFT---GLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp HHHHHHTTTBCC-SSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGGSC---GGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHHHh---cCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 445566666653 457999999997 9999999999999999888732 3456788999999999999999999999
Q ss_pred hhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCC
Q 003231 132 FFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGS 211 (837)
Q Consensus 132 ~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (837)
+++.+++.++..++..++
T Consensus 77 ~~~~~~~~i~~~~l~~~~-------------------------------------------------------------- 94 (297)
T 3b9p_A 77 ECSATFLNISAASLTSKY-------------------------------------------------------------- 94 (297)
T ss_dssp HTTCEEEEEESTTTSSSS--------------------------------------------------------------
T ss_pred HhCCCeEEeeHHHHhhcc--------------------------------------------------------------
Confidence 999999988876653211
Q ss_pred CCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------
Q 003231 212 SFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS-------- 283 (837)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-------- 283 (837)
.++....+..+|..+... +|.||||||+|.++..+
T Consensus 95 ----------------------------------~~~~~~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~ 137 (297)
T 3b9p_A 95 ----------------------------------VGDGEKLVRALFAVARHM---QPSIIFIDEVDSLLSERSSSEHEAS 137 (297)
T ss_dssp ----------------------------------CSCHHHHHHHHHHHHHHT---CSEEEEEETGGGTSBCC-----CCS
T ss_pred ----------------------------------cchHHHHHHHHHHHHHHc---CCcEEEeccHHHhccccccCcchHH
Confidence 011122455566666554 89999999999976432
Q ss_pred HHHHHHHHHHHHhcc-----CCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcc
Q 003231 284 QRFYNLLDKLLKKLS-----GSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQ 358 (837)
Q Consensus 284 ~~~~~~lk~~l~~l~-----g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~ 358 (837)
.+..+.|-..++.+. +++++||+ +|++..+|+++.+||...+.+++|+.++|..||+.++.+.. ..
T Consensus 138 ~~~~~~ll~~l~~~~~~~~~~~v~vi~~-----tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~----~~ 208 (297)
T 3b9p_A 138 RRLKTEFLVEFDGLPGNPDGDRIVVLAA-----TNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG----SP 208 (297)
T ss_dssp HHHHHHHHHHHHHCC------CEEEEEE-----ESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS----CC
T ss_pred HHHHHHHHHHHhcccccCCCCcEEEEee-----cCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC----CC
Confidence 233333434444443 46889988 66777899999999999999999999999999997653210 00
Q ss_pred cchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCcc----ccCCceeecHHhHHHHHHHhh
Q 003231 359 DNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPE----YRNGKLVISSKSLSHGLSIFQ 433 (837)
Q Consensus 359 ~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~----~~~~~~~i~~~~~~~~l~~~~ 433 (837)
+ .+.....|...+.+ +++.+|..++..|.-.++....... .......|+.+||..|+..++
T Consensus 209 --~---------~~~~~~~la~~~~g---~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 209 --L---------DTEALRRLAKITDG---YSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp --S---------CHHHHHHHHHHTTT---CCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred --C---------CHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 0 11233445556666 7888888888887666654322100 001223589999999988443
No 70
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.67 E-value=2.1e-15 Score=172.85 Aligned_cols=238 Identities=16% Similarity=0.185 Sum_probs=170.5
Q ss_pred cccCCC-ccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeE
Q 003231 59 QVLDGK-DIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKL 137 (837)
Q Consensus 59 ~vv~~~-~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~l 137 (837)
.++.++ ...++|+++.+. +..|..|.+.+.. ++++.. |..-=...+++|||+||+++++++||||+|++.+++|
T Consensus 3 ~~~~~~~~~~~~f~di~G~--~~~~~~l~e~v~~-l~~~~~--~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f 77 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGA--EEAIEELKEVVEF-LKDPSK--FNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF 77 (476)
T ss_dssp --CCCCCSCCCCGGGCCSC--HHHHHHHHHHHHH-HHCTHH--HHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceeccCCCCCCCHHHhCCc--HHHHHHHHHHHHH-hhChHH--HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 345555 789999999998 9999999987654 665543 2211124567899999999999999999999999999
Q ss_pred EEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCccc
Q 003231 138 LLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKH 217 (837)
Q Consensus 138 l~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (837)
+.++.++|...+ .|
T Consensus 78 ~~is~~~~~~~~---~g--------------------------------------------------------------- 91 (476)
T 2ce7_A 78 FHISGSDFVELF---VG--------------------------------------------------------------- 91 (476)
T ss_dssp EEEEGGGTTTCC---TT---------------------------------------------------------------
T ss_pred eeCCHHHHHHHH---hc---------------------------------------------------------------
Confidence 998887775321 00
Q ss_pred ccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHH
Q 003231 218 RRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNL 289 (837)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~ 289 (837)
...--+..+|+-+.. ..|+||||||||.+...+ .+....
T Consensus 92 ------------------------------~~~~~~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~ 138 (476)
T 2ce7_A 92 ------------------------------VGAARVRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQT 138 (476)
T ss_dssp ------------------------------HHHHHHHHHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHH
T ss_pred ------------------------------ccHHHHHHHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHH
Confidence 000123345555544 489999999999954321 111122
Q ss_pred HHHHHHhc-----cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchh
Q 003231 290 LDKLLKKL-----SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKN 362 (837)
Q Consensus 290 lk~~l~~l-----~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~ 362 (837)
+..+|..+ ..+|+||++ +|++..+|+++.| ||...|.|++|+.++|..||+.++.+.
T Consensus 139 l~~LL~~ld~~~~~~~viVIaa-----Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~----------- 202 (476)
T 2ce7_A 139 LNQLLVEMDGFDSKEGIIVMAA-----TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK----------- 202 (476)
T ss_dssp HHHHHHHHHHSCGGGTEEEEEE-----ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-----------
T ss_pred HHHHHHHHhccCCCCCEEEEEe-----cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC-----------
Confidence 33333322 257999998 6777889999998 999999999999999999999764321
Q ss_pred HHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHh
Q 003231 363 HIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 363 ~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
-...+++...|+..+.. +++.+|..++..|+.++...+. -.|+.++|+.++..+
T Consensus 203 -----~l~~~v~l~~la~~t~G---~sgadL~~lv~~Aal~A~~~~~--------~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 203 -----PLAEDVNLEIIAKRTPG---FVGADLENLVNEAALLAAREGR--------DKITMKDFEEAIDRV 256 (476)
T ss_dssp -----CBCTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHHHHH
T ss_pred -----CCcchhhHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHcCC--------CeecHHHHHHHHHHH
Confidence 12245667778888888 8999999999999888765432 248999999999843
No 71
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=2e-15 Score=159.15 Aligned_cols=234 Identities=16% Similarity=0.214 Sum_probs=164.7
Q ss_pred CCCccccccccccccccHHHHHHHHHHHHhhcccccc-cccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEe
Q 003231 62 DGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEI-SKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLL 140 (837)
Q Consensus 62 ~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~l 140 (837)
+.+...++|+++.++ ++.|..|.+.+-. +++++. .+++ ...+++|||+||+++++++||||||++.+++++.+
T Consensus 3 ~~~~~~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 3 TEDQIKTTFADVAGC--DEAKEEVAELVEY-LREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp EECSSCCCGGGSCSC--HHHHHHTHHHHHH-HHCGGGC--------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CccCCCCCHHHhcCc--HHHHHHHHHHHHH-HhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 456678999999998 9999999887643 666543 2221 24567899999999999999999999999999888
Q ss_pred eccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccC
Q 003231 141 DVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRN 220 (837)
Q Consensus 141 d~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (837)
+..++...+ .|.
T Consensus 77 ~~~~~~~~~---~~~----------------------------------------------------------------- 88 (257)
T 1lv7_A 77 SGSDFVEMF---VGV----------------------------------------------------------------- 88 (257)
T ss_dssp CSCSSTTSC---CCC-----------------------------------------------------------------
T ss_pred eHHHHHHHh---hhh-----------------------------------------------------------------
Confidence 877664211 000
Q ss_pred CCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHH
Q 003231 221 ASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDK 292 (837)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~ 292 (837)
..-.+..+|+-+.. ..|.||||||||.+...+ .+....+..
T Consensus 89 ----------------------------~~~~~~~~~~~a~~---~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ 137 (257)
T 1lv7_A 89 ----------------------------GASRVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ 137 (257)
T ss_dssp ----------------------------CHHHHHHHHHHHHT---TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHH---cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHH
Confidence 00123345554433 479999999999965422 111122333
Q ss_pred HHHhc-----cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 003231 293 LLKKL-----SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIA 365 (837)
Q Consensus 293 ~l~~l-----~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~ 365 (837)
+|..+ ..++++|++ +|.+..+|+++.| ||...|.|++|+.++|..||+.++.+.
T Consensus 138 ll~~l~~~~~~~~~~vI~~-----tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-------------- 198 (257)
T 1lv7_A 138 MLVEMDGFEGNEGIIVIAA-----TNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-------------- 198 (257)
T ss_dssp HHHHHHTCCSSSCEEEEEE-----ESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--------------
T ss_pred HHHHhhCcccCCCEEEEEe-----eCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC--------------
Confidence 33332 347889987 5666789999998 999999999999999999998764321
Q ss_pred HHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHh
Q 003231 366 EVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 366 ~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
-...+.+...+...+.+ +++.+|..++..|+.++..++. -.|+.++|+.++..+
T Consensus 199 --~l~~~~~~~~la~~~~G---~~~~dl~~l~~~a~~~a~~~~~--------~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 199 --PLAPDIDAAIIARGTPG---FSGADLANLVNEAALFAARGNK--------RVVSMVEFEKAKDKI 252 (257)
T ss_dssp --CBCTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHHHHH
T ss_pred --CCCccccHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhCC--------CcccHHHHHHHHHHH
Confidence 01234455566666766 8999999999999888876543 248999999999844
No 72
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.66 E-value=6.4e-16 Score=173.33 Aligned_cols=241 Identities=19% Similarity=0.248 Sum_probs=168.9
Q ss_pred ccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccc
Q 003231 65 DIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVND 144 (837)
Q Consensus 65 ~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~ 144 (837)
.-.++|+++.+. +..+..|.+.+..++.++++.. .+...++.|||+||+++++++||+|+|++++++++.++..+
T Consensus 109 ~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 109 GTAVKFDDIAGQ--DLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCCCChHHhCCH--HHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 357899999997 9999999999999999888733 24456889999999999999999999999999999999887
Q ss_pred cchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCc
Q 003231 145 FSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDM 224 (837)
Q Consensus 145 ~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (837)
+..++ .|.
T Consensus 184 l~~~~---~g~--------------------------------------------------------------------- 191 (389)
T 3vfd_A 184 LTSKY---VGE--------------------------------------------------------------------- 191 (389)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhccc---cch---------------------------------------------------------------------
Confidence 75422 011
Q ss_pred ccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc--------HHHHHHHHHHHH-
Q 003231 225 SSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS--------QRFYNLLDKLLK- 295 (837)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~--------~~~~~~lk~~l~- 295 (837)
....+..+|+.+... +|.||||||||.++..+ .+..+.|-..++
T Consensus 192 ------------------------~~~~~~~~~~~a~~~---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 244 (389)
T 3vfd_A 192 ------------------------GEKLVRALFAVAREL---QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG 244 (389)
T ss_dssp ------------------------CHHHHHHHHHHHHHS---SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHhc---CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc
Confidence 112566677777665 89999999999975432 122222222232
Q ss_pred ---hccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCC
Q 003231 296 ---KLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAAND 372 (837)
Q Consensus 296 ---~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~ 372 (837)
....+|+|||+ +|....+|+++.+||...|.|++|+.++|..||+.++.+. ... + .+
T Consensus 245 ~~~~~~~~v~vI~a-----tn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~--l---------~~ 304 (389)
T 3vfd_A 245 VQSAGDDRVLVMGA-----TNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQ----GSP--L---------TQ 304 (389)
T ss_dssp HC-----CEEEEEE-----ESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTS----CCC--S---------CH
T ss_pred ccccCCCCEEEEEe-----cCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhc----CCC--C---------CH
Confidence 22467999998 5667889999999999899999999999999999754321 000 0 01
Q ss_pred CChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccc----cCCceeecHHhHHHHHHHh
Q 003231 373 LECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEY----RNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 373 ~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~----~~~~~~i~~~~~~~~l~~~ 432 (837)
..+..|...+.. +++.+|..++..|.-.++..-..... ..+...|+.++|..++..+
T Consensus 305 ~~~~~la~~~~g---~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 305 KELAQLARMTDG---YSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 133455666666 78889999988887776654222111 1233468999999998743
No 73
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=6.9e-17 Score=159.78 Aligned_cols=157 Identities=24% Similarity=0.391 Sum_probs=114.6
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred cccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 788999999999988887643 235689999999999999999999987 788999998
Q ss_pred cccc--cccccccHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEE
Q 003231 593 STIT--SKWFGEDEKNVRALFTLAAK-VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669 (837)
Q Consensus 593 s~l~--s~~~G~~e~~l~~lf~~A~~-~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIa 669 (837)
..+. ..+.+.....+..++..+.. ..+.||||||+|.+.+.+...... .+.+.+...++ ..++.+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~----~~~~~l~~~~~------~~~~~~i~ 156 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM----DAGNMLKPALA------RGELHCVG 156 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC----CCHHHHHHHHH------TTSCCEEE
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH----HHHHHHHHhhc------cCCeEEEE
Confidence 8775 34455566677777776644 457899999999997543211111 11122222222 12467788
Q ss_pred ecCCCC-----CCcHHHHHHHHHhhhcCCCCHHHHHHHH
Q 003231 670 ATNRPF-----DLDEAIIRRFERRIMVGLPSAENREMIL 703 (837)
Q Consensus 670 TTN~~~-----~Ld~aL~rRF~~~I~~~~P~~eer~~IL 703 (837)
+||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 888765 78999999996 6899999999998875
No 74
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.65 E-value=5.2e-16 Score=173.01 Aligned_cols=220 Identities=20% Similarity=0.272 Sum_probs=139.9
Q ss_pred cccchHHHHHHHHHHHcccCCchhh-----------------cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLF-----------------KGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~-----------------~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
|+|++++++.|..++..+..+.... ......+..++||+||||||||++|+++|+.++.+|+.
T Consensus 23 viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 23 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 8999999999998884332222110 00112456789999999999999999999999999999
Q ss_pred Eeccccc-ccccccc-HHHHHHHHHHH----HhcCCeEEEecccccccCCCCCcch--HHHHHHHHHHHHHhhccccc--
Q 003231 590 VSMSTIT-SKWFGED-EKNVRALFTLA----AKVSPTIIFVDEVDSMLGQRTRVGE--HEAMRKIKNEFMTHWDGLLT-- 659 (837)
Q Consensus 590 v~~s~l~-s~~~G~~-e~~l~~lf~~A----~~~~psVLfIDEID~L~~~r~~~~~--~~~~~~i~~~Ll~~ld~~~~-- 659 (837)
+++..+. ..++|.. ...+..++..+ ....++||||||+|.+...+..... ......+.+.|+..+++...
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 182 (376)
T 1um8_A 103 SDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNI 182 (376)
T ss_dssp EEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC-
T ss_pred ecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceec
Confidence 9998876 3455654 44455555432 2336799999999999765322110 00111366777777775310
Q ss_pred -c--------------CCceEEEEEecCC-----------------------------------------CCCCcHHHHH
Q 003231 660 -R--------------NGERILVLAATNR-----------------------------------------PFDLDEAIIR 683 (837)
Q Consensus 660 -~--------------~~~~vlVIaTTN~-----------------------------------------~~~Ld~aL~r 683 (837)
. ...++++|+|+|. ...+.|++++
T Consensus 183 ~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~ 262 (376)
T 1um8_A 183 PPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG 262 (376)
T ss_dssp --------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT
T ss_pred ccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhc
Confidence 0 0133577777662 1136789999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHH----HHh-------hc----CCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Q 003231 684 RFERRIMVGLPSAENREMILKT----LLA-------KE----KVEDLDFKELAAMTE--GYSGSDLKNLCVTAAYRPVRE 746 (837)
Q Consensus 684 RF~~~I~~~~P~~eer~~IL~~----~l~-------~~----~~~d~dl~~LA~~t~--G~sg~DL~~L~~~Aa~~av~r 746 (837)
||+.++.|+.++.++...|+.. ++. .. .+++..+..|+.... ....+.|.+++..+...++.+
T Consensus 263 R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~ 342 (376)
T 1um8_A 263 RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFD 342 (376)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHT
T ss_pred CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhh
Confidence 9988899999999999999862 221 11 126667777777643 346788888888777766654
No 75
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.7e-16 Score=182.87 Aligned_cols=213 Identities=21% Similarity=0.233 Sum_probs=141.6
Q ss_pred CCchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHccc-CCchhhcCCCC---CCCceEEEEcCCCChHHHHHH
Q 003231 502 PDNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPL-RRPDLFKGGLL---KPCRGILLFGPPGTGKTMLAK 577 (837)
Q Consensus 502 ~~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l-~~~e~~~~~~~---~p~~~iLL~GPpGtGKT~LAr 577 (837)
...-|..+++|. +|++|+|++.+++.|.+++.... ..+..|+..+. .+++++||+||||||||++|+
T Consensus 25 ~~~lW~ekyrP~---------~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 25 SDKLWTVKYAPT---------NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp -CCCHHHHTCCS---------SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHH
T ss_pred cCCCcccccCCC---------CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHH
Confidence 345788899887 89999999999999999987522 11233333222 256799999999999999999
Q ss_pred HHHHHhCCcEEEEeccccccccccccHH-------HHHHHHHHH-----HhcCCeEEEecccccccCCCCCcchHHHHHH
Q 003231 578 AIANEAGASFINVSMSTITSKWFGEDEK-------NVRALFTLA-----AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRK 645 (837)
Q Consensus 578 alA~elg~~~i~v~~s~l~s~~~G~~e~-------~l~~lf~~A-----~~~~psVLfIDEID~L~~~r~~~~~~~~~~~ 645 (837)
++|++++.+++.++++++.........- .+..+|..+ ....++||||||+|.+..... .
T Consensus 96 ~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~---------~ 166 (516)
T 1sxj_A 96 LVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR---------G 166 (516)
T ss_dssp HHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST---------T
T ss_pred HHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH---------H
Confidence 9999999999999999876543211100 012223322 224578999999999975321 1
Q ss_pred HHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHH
Q 003231 646 IKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAM 723 (837)
Q Consensus 646 i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~ 723 (837)
..+.|...++. .+..+++++++.....+.+ +++|+ ..+.|+.|+.+++..++..++...++ ++..+..|+..
T Consensus 167 ~l~~L~~~l~~----~~~~iIli~~~~~~~~l~~-l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~ 240 (516)
T 1sxj_A 167 GVGQLAQFCRK----TSTPLILICNERNLPKMRP-FDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240 (516)
T ss_dssp HHHHHHHHHHH----CSSCEEEEESCTTSSTTGG-GTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHh----cCCCEEEEEcCCCCccchh-hHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 12333333332 2233555555444344543 55554 68899999999999999988876554 77778999998
Q ss_pred cCCCCHHHHHHHHHHH
Q 003231 724 TEGYSGSDLKNLCVTA 739 (837)
Q Consensus 724 t~G~sg~DL~~L~~~A 739 (837)
+.|- .+.+.++++.+
T Consensus 241 s~Gd-iR~~i~~L~~~ 255 (516)
T 1sxj_A 241 TRGD-IRQVINLLSTI 255 (516)
T ss_dssp TTTC-HHHHHHHHTHH
T ss_pred cCCc-HHHHHHHHHHH
Confidence 8763 33444444433
No 76
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=5.6e-16 Score=169.43 Aligned_cols=159 Identities=21% Similarity=0.214 Sum_probs=108.9
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--cccc
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT--SKWF 600 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~--s~~~ 600 (837)
.+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++..-. ....
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 566799999999988777643 25899999999999999999999999999998874211 1111
Q ss_pred cccHHH-HHHHHHHHHhcC---CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccc-------cccCCceEEEEE
Q 003231 601 GEDEKN-VRALFTLAAKVS---PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL-------LTRNGERILVLA 669 (837)
Q Consensus 601 G~~e~~-l~~lf~~A~~~~---psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~-------~~~~~~~vlVIa 669 (837)
|..... ....|. .... .+||||||++.+.+ ...+.|+..++.. ....+.+++||+
T Consensus 90 g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 90 GTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPA------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp EEEEEETTTTEEE--EEECTTCSSEEEEETGGGSCH------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred CceeecCCCCceE--eccCcccccEEEEEccccCCH------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 110000 000000 0111 37999999998742 2333444444321 112334578889
Q ss_pred ecCCCC-----CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc
Q 003231 670 ATNRPF-----DLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE 710 (837)
Q Consensus 670 TTN~~~-----~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~ 710 (837)
|+|... .+++++++||+..+.++.|+.+++.+|++..+...
T Consensus 156 t~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred ecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence 988543 38999999997789999999999999999887653
No 77
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.8e-15 Score=164.34 Aligned_cols=194 Identities=19% Similarity=0.208 Sum_probs=139.6
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...|..+++|. +|++++|++++++.+..++... ...++||+||||||||++|+++|+.
T Consensus 24 ~~~~~~k~~p~---------~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 24 QQPWVEKYRPK---------NLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp --CHHHHTCCS---------STTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CccHHHhcCCC---------CHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45688888877 8999999999999998887541 2234999999999999999999998
Q ss_pred hC------CcEEEEeccccccccccccHHHHHHHHHHHH----------------hcCCeEEEecccccccCCCCCcchH
Q 003231 583 AG------ASFINVSMSTITSKWFGEDEKNVRALFTLAA----------------KVSPTIIFVDEVDSMLGQRTRVGEH 640 (837)
Q Consensus 583 lg------~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~----------------~~~psVLfIDEID~L~~~r~~~~~~ 640 (837)
++ ..++.+++++... ...++..+.... ...+.||||||+|.+.+
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-------- 147 (353)
T 1sxj_D 82 LYGPDLMKSRILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-------- 147 (353)
T ss_dssp HHHHHHHTTSEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------
T ss_pred hCCCcccccceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------
Confidence 64 4688888876422 111222221111 12356999999998843
Q ss_pred HHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHH
Q 003231 641 EAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFK 718 (837)
Q Consensus 641 ~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~ 718 (837)
...+.|+..++.. ..+..+|++||.+..+.+++++||. .+.|+.|+.++...+++..+...++ ++..+.
T Consensus 148 ----~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~ 218 (353)
T 1sxj_D 148 ----DAQSALRRTMETY----SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLE 218 (353)
T ss_dssp ----HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHH
T ss_pred ----HHHHHHHHHHHhc----CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 2234455555443 2235667788999999999999994 8899999999999999998876654 788899
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHH
Q 003231 719 ELAAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 719 ~LA~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
.++..+.|. .+.+.+++..++..
T Consensus 219 ~l~~~~~G~-~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 219 RILDISAGD-LRRGITLLQSASKG 241 (353)
T ss_dssp HHHHHTSSC-HHHHHHHHHHTHHH
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHh
Confidence 999999874 55566666655544
No 78
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=5.9e-15 Score=163.70 Aligned_cols=192 Identities=20% Similarity=0.243 Sum_probs=138.2
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEecc
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-----------GASFINVSMS 593 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-----------g~~~i~v~~s 593 (837)
++++|.++.++.+..++...... ..+++++|+||||||||++|+++++++ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 46999999999999887653221 345689999999999999999999988 8999999987
Q ss_pred ccc-cc----------c-------cccc-HHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHH-HHHHHHh
Q 003231 594 TIT-SK----------W-------FGED-EKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKI-KNEFMTH 653 (837)
Q Consensus 594 ~l~-s~----------~-------~G~~-e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i-~~~Ll~~ 653 (837)
... .. . .+.. ...+..++..+.... .||||||+|.+...... .. +..++..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~--------~~~l~~l~~~ 161 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGG--------DIVLYQLLRS 161 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTS--------HHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCC--------ceeHHHHhcC
Confidence 643 11 0 1111 233444444444433 49999999998643211 22 3333322
Q ss_pred hccccccCCceEEEEEecCCC---CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh----cCCChhhHHHHHHHcC-
Q 003231 654 WDGLLTRNGERILVLAATNRP---FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK----EKVEDLDFKELAAMTE- 725 (837)
Q Consensus 654 ld~~~~~~~~~vlVIaTTN~~---~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~----~~~~d~dl~~LA~~t~- 725 (837)
. .++.+|+|||.+ ..+++.+++||...+.|++|+.+++..|++..+.. ..+++..++.++..+.
T Consensus 162 ~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 162 D--------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C--------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 1 458889999887 67899999998779999999999999999998864 2346777888888887
Q ss_pred --CCCHHHHHHHHHHHHHHH
Q 003231 726 --GYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 726 --G~sg~DL~~L~~~Aa~~a 743 (837)
| ..+.+.++|..|...+
T Consensus 234 ~~G-~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 234 EHG-DARKAVNLLFRAAQLA 252 (384)
T ss_dssp TCC-CHHHHHHHHHHHHHHT
T ss_pred ccC-CHHHHHHHHHHHHHHh
Confidence 4 3456677777776554
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=6e-16 Score=188.02 Aligned_cols=183 Identities=20% Similarity=0.307 Sum_probs=134.0
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.|++|+|+++.++.+...+.. ....++||+||||||||++|+++|..+ +.+++.+++
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 788999999999999888754 345689999999999999999999997 888998888
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecC
Q 003231 593 STITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATN 672 (837)
Q Consensus 593 s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN 672 (837)
..+|.|+.+..++.+|..+....++||||| +. ....+.|+..+. ...+.+|++||
T Consensus 245 ---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~----------~~~~~~L~~~l~------~~~v~~I~at~ 299 (758)
T 3pxi_A 245 ---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA----------IDASNILKPSLA------RGELQCIGATT 299 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT------SSSCEEEEECC
T ss_pred ---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc----------hhHHHHHHHHHh------cCCEEEEeCCC
Confidence 556788888899999999999889999999 10 012233333332 23588999999
Q ss_pred CCC-----CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh----cC--CChhhHHHHHHHcC-----CCCHHHHHHHH
Q 003231 673 RPF-----DLDEAIIRRFERRIMVGLPSAENREMILKTLLAK----EK--VEDLDFKELAAMTE-----GYSGSDLKNLC 736 (837)
Q Consensus 673 ~~~-----~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~----~~--~~d~dl~~LA~~t~-----G~sg~DL~~L~ 736 (837)
... .+++++++|| ..+.|+.|+.+++..|++.++.. ++ +++..+..++..+. ++.+.....++
T Consensus 300 ~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll 378 (758)
T 3pxi_A 300 LDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (758)
T ss_dssp TTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred hHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHH
Confidence 887 7999999999 66999999999999999987765 22 26666777776654 45567777777
Q ss_pred HHHHHHHH
Q 003231 737 VTAAYRPV 744 (837)
Q Consensus 737 ~~Aa~~av 744 (837)
..|+..+.
T Consensus 379 ~~a~~~~~ 386 (758)
T 3pxi_A 379 DEAGSKVR 386 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 80
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.63 E-value=3.3e-15 Score=163.74 Aligned_cols=159 Identities=19% Similarity=0.330 Sum_probs=100.4
Q ss_pred CccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------c-------
Q 003231 521 GVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA-------S------- 586 (837)
Q Consensus 521 ~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~-------~------- 586 (837)
..+|++++|++++++.+......+ ...++||+||||||||++|+++|+.++. +
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 358999999999887765444321 2346999999999999999999998863 2
Q ss_pred -------------------EEEEeccccccccccccHHHHHHHHHHH---------HhcCCeEEEecccccccCCCCCcc
Q 003231 587 -------------------FINVSMSTITSKWFGEDEKNVRALFTLA---------AKVSPTIIFVDEVDSMLGQRTRVG 638 (837)
Q Consensus 587 -------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A---------~~~~psVLfIDEID~L~~~r~~~~ 638 (837)
++.+.........+|... +...+... ....++||||||++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------ 158 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLED------ 158 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------
Confidence 222111111111122100 01111111 111368999999998843
Q ss_pred hHHHHHHHHHHHHHhhccc---ccc------CCceEEEEEecCCCC-CCcHHHHHHHHHhhhcCCC-CHHHHHHHHHHH
Q 003231 639 EHEAMRKIKNEFMTHWDGL---LTR------NGERILVLAATNRPF-DLDEAIIRRFERRIMVGLP-SAENREMILKTL 706 (837)
Q Consensus 639 ~~~~~~~i~~~Ll~~ld~~---~~~------~~~~vlVIaTTN~~~-~Ld~aL~rRF~~~I~~~~P-~~eer~~IL~~~ 706 (837)
...+.|+..++.. ... .+.++++|+|||... .+++++++||+..+.++.| +.+++..|++..
T Consensus 159 ------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 159 ------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp ------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 2333444444321 011 113689999999744 8999999999877999998 677888888764
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=2.4e-15 Score=182.71 Aligned_cols=205 Identities=20% Similarity=0.302 Sum_probs=150.5
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA- 583 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el- 583 (837)
++...+++. .|++++|.++.++.+.+.+.. ....++||+||||||||++|+++|..+
T Consensus 175 ~l~~~~~~~---------~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 175 NLNQLARVG---------GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp BHHHHHHTT---------CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHhcC---------CCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 455666655 789999999999998887753 345789999999999999999999987
Q ss_pred ---------CCcEEEEeccccc--cccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHH
Q 003231 584 ---------GASFINVSMSTIT--SKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMT 652 (837)
Q Consensus 584 ---------g~~~i~v~~s~l~--s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~ 652 (837)
+..++.+++..+. .++.|..+..++.+|..+....++||||||+|.+.+.+...... ....+.|..
T Consensus 233 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~---~~~~~~L~~ 309 (758)
T 1r6b_X 233 QGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ---VDAANLIKP 309 (758)
T ss_dssp HTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH---HHHHHHHSS
T ss_pred hCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch---HHHHHHHHH
Confidence 6778888888876 45788889999999999988888999999999998765432111 122222222
Q ss_pred hhccccccCCceEEEEEecCCC-----CCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh----cC--CChhhHHHHH
Q 003231 653 HWDGLLTRNGERILVLAATNRP-----FDLDEAIIRRFERRIMVGLPSAENREMILKTLLAK----EK--VEDLDFKELA 721 (837)
Q Consensus 653 ~ld~~~~~~~~~vlVIaTTN~~-----~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~----~~--~~d~dl~~LA 721 (837)
.+ . ...+.+|++||.+ ..+++++.+||. .+.|+.|+.+++..|++.++.. +. +.+..+..++
T Consensus 310 ~l----~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~ 382 (758)
T 1r6b_X 310 LL----S--SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAV 382 (758)
T ss_dssp CS----S--SCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HH----h--CCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 22 1 2347788888753 467899999996 7999999999999999987754 22 3666677777
Q ss_pred HHcCC-----CCHHHHHHHHHHHHH
Q 003231 722 AMTEG-----YSGSDLKNLCVTAAY 741 (837)
Q Consensus 722 ~~t~G-----~sg~DL~~L~~~Aa~ 741 (837)
..+.| +.+..+..++.+|+.
T Consensus 383 ~~s~~~i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 383 ELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp HHHHHHCTTSCTTHHHHHHHHHHHH
T ss_pred HHhhhhcccccCchHHHHHHHHHHH
Confidence 76655 345566777766654
No 82
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=1.1e-14 Score=157.64 Aligned_cols=191 Identities=22% Similarity=0.284 Sum_probs=140.3
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|..+++|. +|++++|++++++.+..++... ...++||+||||||||++|+++|+.+
T Consensus 13 ~~~~~k~~p~---------~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 13 KPWVEKYRPQ---------RLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp SCHHHHTCCC---------STTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CchhhccCCC---------CHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4577777776 8999999999999999888641 23359999999999999999999986
Q ss_pred C-----CcEEEEeccccccccccccHHHHHHHHHH-HHh-----cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHH
Q 003231 584 G-----ASFINVSMSTITSKWFGEDEKNVRALFTL-AAK-----VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMT 652 (837)
Q Consensus 584 g-----~~~i~v~~s~l~s~~~G~~e~~l~~lf~~-A~~-----~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~ 652 (837)
. ..++.+++++..+. ..++..+.. +.. ..+.||||||+|.+.. ...+.|+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~ 132 (327)
T 1iqp_A 71 FGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------DAQQALRR 132 (327)
T ss_dssp HGGGHHHHEEEEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH------------HHHHHHHH
T ss_pred cCCcccCceEEeeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------------HHHHHHHH
Confidence 3 35788887654221 111222221 111 3478999999998842 22344444
Q ss_pred hhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHH
Q 003231 653 HWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGS 730 (837)
Q Consensus 653 ~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~ 730 (837)
.++.. ...+.+|++||.+..+.+.+.+||. .+.|+.|+.++...+++..+...++ ++..++.++..+.| +.+
T Consensus 133 ~le~~----~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r 206 (327)
T 1iqp_A 133 TMEMF----SSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMR 206 (327)
T ss_dssp HHHHT----TTTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHH
T ss_pred HHHhc----CCCCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHH
Confidence 44432 2347788889999999999999994 7899999999999999999887765 77888899998876 555
Q ss_pred HHHHHHHHHH
Q 003231 731 DLKNLCVTAA 740 (837)
Q Consensus 731 DL~~L~~~Aa 740 (837)
.+.++++.++
T Consensus 207 ~~~~~l~~~~ 216 (327)
T 1iqp_A 207 RAINILQAAA 216 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=1.5e-15 Score=186.69 Aligned_cols=198 Identities=22% Similarity=0.334 Sum_probs=135.5
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSM 592 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~ 592 (837)
.|++++|.++.++.+.+.+.. ...+++||+||||||||++|+++|..+ +.+++.+++
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 789999999998888887754 234679999999999999999999988 889999999
Q ss_pred cccc--cccccccHHHHHHHHHHHHhc-CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEE
Q 003231 593 STIT--SKWFGEDEKNVRALFTLAAKV-SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLA 669 (837)
Q Consensus 593 s~l~--s~~~G~~e~~l~~lf~~A~~~-~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIa 669 (837)
+.+. ..+.|..+..++.+|..+... .++||||||+|.+.+.+...+... ..+.+...+.. ..+.+|+
T Consensus 235 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~----~~~~L~~~l~~------~~i~~I~ 304 (854)
T 1qvr_A 235 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVD----AGNMLKPALAR------GELRLIG 304 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHHT------TCCCEEE
T ss_pred HHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHH----HHHHHHHHHhC------CCeEEEE
Confidence 9886 467888888999999998875 689999999999986543322222 22233333321 2467888
Q ss_pred ecCCCC----CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc----CC--ChhhHHHHHHHcC-----CCCHHHHHH
Q 003231 670 ATNRPF----DLDEAIIRRFERRIMVGLPSAENREMILKTLLAKE----KV--EDLDFKELAAMTE-----GYSGSDLKN 734 (837)
Q Consensus 670 TTN~~~----~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~----~~--~d~dl~~LA~~t~-----G~sg~DL~~ 734 (837)
+||.+. .+++++++||+ .+.|+.|+.+++..|++.++... ++ .+..+..++..+. .|.+.....
T Consensus 305 at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 305 ATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp EECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred ecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 887653 57899999996 59999999999999998776632 33 6777777777654 456777777
Q ss_pred HHHHHHHHHH
Q 003231 735 LCVTAAYRPV 744 (837)
Q Consensus 735 L~~~Aa~~av 744 (837)
++.+|+...-
T Consensus 384 lldea~a~~~ 393 (854)
T 1qvr_A 384 LIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777765543
No 84
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.60 E-value=2e-14 Score=158.03 Aligned_cols=194 Identities=19% Similarity=0.228 Sum_probs=137.7
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccc
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGE 602 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~ 602 (837)
+|++++|++.+++.+...+.....+ . .++.+++|+||||+|||+||+++|..++.++...+++.+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~-~-------~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMR-G-------EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHH-T-------CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhc-C-------CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 7899999999999988777542111 0 34578999999999999999999999999887776654321
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc-------cc-------CCceEEEE
Q 003231 603 DEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL-------TR-------NGERILVL 668 (837)
Q Consensus 603 ~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~-------~~-------~~~~vlVI 668 (837)
...+..++.. ...+.|+||||++.+.+ ...+.++..+.... .. .-..+.++
T Consensus 90 -~~~l~~~~~~--~~~~~v~~iDE~~~l~~------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 90 -QGDMAAILTS--LERGDVLFIDEIHRLNK------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -HHHHHHHHHH--CCTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -HHHHHHHHHH--ccCCCEEEEcchhhcCH------------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 1223333322 23468999999998853 11122222222110 00 01236677
Q ss_pred EecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 003231 669 AATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVR 745 (837)
Q Consensus 669 aTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~ 745 (837)
++|+.+..+++++++||...+.+++|+.+++.+|++......++ ++..+..++.++.| +++++.+++..+...|..
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 89999999999999999777899999999999999998876554 67778899999887 567888888877665543
No 85
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.60 E-value=9.5e-16 Score=151.47 Aligned_cols=159 Identities=19% Similarity=0.380 Sum_probs=114.7
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.++.+++++. .|++++|.+...+.+.+.+.. ....++||+||||||||++|++++..+
T Consensus 10 ~~l~~~~~~~---------~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 10 RDLTALARAG---------KLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEHHHHHHTT---------CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---------ccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3466666665 788999999988888877643 235689999999999999999999987
Q ss_pred ----------CCcEEEEecccccc--ccccccHHHHHHHHHHHHhc-CCeEEEecccccccCCCC-CcchHHHHHHHHHH
Q 003231 584 ----------GASFINVSMSTITS--KWFGEDEKNVRALFTLAAKV-SPTIIFVDEVDSMLGQRT-RVGEHEAMRKIKNE 649 (837)
Q Consensus 584 ----------g~~~i~v~~s~l~s--~~~G~~e~~l~~lf~~A~~~-~psVLfIDEID~L~~~r~-~~~~~~~~~~i~~~ 649 (837)
+.+++.+++..+.. .+.+.....+..++..+... .+.||||||+|.+.+.+. ..... .+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~----~~~~~ 143 (187)
T 2p65_A 68 VQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGAL----DAGNI 143 (187)
T ss_dssp HTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSC----CTHHH
T ss_pred HhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccch----HHHHH
Confidence 78899998877652 24455566677777777665 678999999999975443 11111 12222
Q ss_pred HHHhhccccccCCceEEEEEecCCCC-----CCcHHHHHHHHHhhhcCCCC
Q 003231 650 FMTHWDGLLTRNGERILVLAATNRPF-----DLDEAIIRRFERRIMVGLPS 695 (837)
Q Consensus 650 Ll~~ld~~~~~~~~~vlVIaTTN~~~-----~Ld~aL~rRF~~~I~~~~P~ 695 (837)
+...++. .++++|++||.+. .+++++++||. .+.++.|+
T Consensus 144 l~~~~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 144 LKPMLAR------GELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHHT------TCSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHHhc------CCeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 3222221 3478888888764 68999999996 58888875
No 86
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=2.5e-14 Score=157.80 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=139.8
Q ss_pred ccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecccccc
Q 003231 524 FADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA------GASFINVSMSTITS 597 (837)
Q Consensus 524 fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el------g~~~i~v~~s~l~s 597 (837)
+++++|.++.++.+..++...+.. ..+..++|+||||||||+++++++..+ +.+++.++|.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 467999999999988876542211 345689999999999999999999988 88999999764322
Q ss_pred c----------------ccccc-HHHHHHHHHHHHhcC-CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc
Q 003231 598 K----------------WFGED-EKNVRALFTLAAKVS-PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT 659 (837)
Q Consensus 598 ~----------------~~G~~-e~~l~~lf~~A~~~~-psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~ 659 (837)
. ..+.. ......++....... |.||||||++.+...... ..+..++..++..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~~-- 159 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSEV-- 159 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHSC--
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhhc--
Confidence 1 01111 222444444444443 899999999998643211 3344555555433
Q ss_pred cCCceEEEEEecCCC---CCCcHHHHHHHHH-hhhcCCCCHHHHHHHHHHHHhh----cCCChhhHHHHHHHcC---CCC
Q 003231 660 RNGERILVLAATNRP---FDLDEAIIRRFER-RIMVGLPSAENREMILKTLLAK----EKVEDLDFKELAAMTE---GYS 728 (837)
Q Consensus 660 ~~~~~vlVIaTTN~~---~~Ld~aL~rRF~~-~I~~~~P~~eer~~IL~~~l~~----~~~~d~dl~~LA~~t~---G~s 728 (837)
...++.+|++||.+ ..+++.+.+||.. .+.++.++.+++.+|++..+.. ..+++..+..++..+. | .
T Consensus 160 -~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~ 237 (386)
T 2qby_A 160 -NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-D 237 (386)
T ss_dssp -CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-C
T ss_pred -CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-C
Confidence 23468888888876 4678899999853 7899999999999999987764 2346777788888877 6 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 003231 729 GSDLKNLCVTAAYRPV 744 (837)
Q Consensus 729 g~DL~~L~~~Aa~~av 744 (837)
.+.+.++|..|+..+.
T Consensus 238 ~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 238 ARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566778887766554
No 87
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.59 E-value=4.5e-15 Score=160.06 Aligned_cols=185 Identities=22% Similarity=0.237 Sum_probs=132.7
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTITS 597 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l~s 597 (837)
+|++++|++.+++.+..++.. ....++||+||||||||++|+++|+.+ +.+++.+++++..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred CHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 899999999999988776643 122349999999999999999999987 45688888876432
Q ss_pred ccccccHHHHHHHHHHH-H-hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC
Q 003231 598 KWFGEDEKNVRALFTLA-A-KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF 675 (837)
Q Consensus 598 ~~~G~~e~~l~~lf~~A-~-~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~ 675 (837)
. ......+....... . ...+.||||||+|.+.. ...+.|+..++. ...++.+|++||.+.
T Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~----~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 82 I--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEM----YSKSCRFILSCNYVS 143 (319)
T ss_dssp T--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSS----SSSSEEEEEEESCGG
T ss_pred h--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHh----cCCCCeEEEEeCChh
Confidence 1 11112222221000 0 13478999999998842 223444444443 334578888999999
Q ss_pred CCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 676 DLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 676 ~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
.+.+.+++|| ..+.|+.|+.+++..++..++...+. ++..++.++..+.| ..+.+.++++.++
T Consensus 144 ~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 144 RIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp GSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred hcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999 48999999999999999999887765 77788888887776 4455556655544
No 88
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=1.2e-14 Score=156.94 Aligned_cols=191 Identities=19% Similarity=0.183 Sum_probs=140.8
Q ss_pred chHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 504 NEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 504 ~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..|..+++|. .|++++|++.+++.+..++... +.+ ++||+||||+|||++|+++|+.+
T Consensus 9 ~~~~~~~~p~---------~~~~~~g~~~~~~~l~~~l~~~------------~~~-~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 9 LPWVEKYRPQ---------VLSDIVGNKETIDRLQQIAKDG------------NMP-HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCHHHHTCCS---------SGGGCCSCTHHHHHHHHHHHSC------------CCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHhcCCC---------CHHHHHCCHHHHHHHHHHHHcC------------CCC-eEEEECcCCCCHHHHHHHHHHHh
Confidence 3577777776 7899999999999999888641 223 39999999999999999999986
Q ss_pred -----CCcEEEEeccccccccccccHHHHHHHHHHHH-------hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHH
Q 003231 584 -----GASFINVSMSTITSKWFGEDEKNVRALFTLAA-------KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 651 (837)
Q Consensus 584 -----g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~-------~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll 651 (837)
+.+++.+++++..+ ...++.++.... ...+.||||||+|.+.. ...+.|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~ 128 (323)
T 1sxj_B 67 LGRSYADGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------GAQQALR 128 (323)
T ss_dssp HGGGHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------HHHHTTH
T ss_pred cCCcccCCEEEecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------HHHHHHH
Confidence 45688888765321 234455555443 22378999999998842 1223344
Q ss_pred HhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHcCCCCH
Q 003231 652 THWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMTEGYSG 729 (837)
Q Consensus 652 ~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t~G~sg 729 (837)
..++. ...++.+|++||.+..+.+.+++|+ ..+.|+.|+.+++..+++..+...+. ++..+..++..+.|. .
T Consensus 129 ~~le~----~~~~~~~il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~ 202 (323)
T 1sxj_B 129 RTMEL----YSNSTRFAFACNQSNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-M 202 (323)
T ss_dssp HHHHH----TTTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-H
T ss_pred HHHhc----cCCCceEEEEeCChhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 44433 2234677888899999999999998 48999999999999999998876654 677888999998874 4
Q ss_pred HHHHHHHHHHH
Q 003231 730 SDLKNLCVTAA 740 (837)
Q Consensus 730 ~DL~~L~~~Aa 740 (837)
+.+.+++..++
T Consensus 203 r~a~~~l~~~~ 213 (323)
T 1sxj_B 203 RQAINNLQSTV 213 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555444
No 89
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.59 E-value=2.1e-15 Score=172.72 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=79.5
Q ss_pred CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEe---------cC---CCCCCcHHHHHHHH
Q 003231 619 PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAA---------TN---RPFDLDEAIIRRFE 686 (837)
Q Consensus 619 psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaT---------TN---~~~~Ld~aL~rRF~ 686 (837)
|.|+||||+|.|.. ...+.|+..++.. ...++|++| ++ .+..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~~------------~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI------------ECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCBH------------HHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcCH------------HHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 36999999999842 4556666666542 233655566 33 26789999999995
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhhcCC--ChhhHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Q 003231 687 RRIMVGLPSAENREMILKTLLAKEKV--EDLDFKELAAMT-EGYSGSDLKNLCVTAAYRPV 744 (837)
Q Consensus 687 ~~I~~~~P~~eer~~IL~~~l~~~~~--~d~dl~~LA~~t-~G~sg~DL~~L~~~Aa~~av 744 (837)
. +.|+.|+.++..+|++..+...+. ++..+..++..+ .| +++...+++..|...|.
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~ 418 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAK 418 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHH
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHh
Confidence 5 699999999999999988765554 777788888887 65 67777777776655554
No 90
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=1.1e-13 Score=153.27 Aligned_cols=199 Identities=16% Similarity=0.103 Sum_probs=141.3
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCc--eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCR--GILLFGPPGTGKTMLAKAIANEA----GASFINVSMSTITSK 598 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~--~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s~l~s~ 598 (837)
++++|.++.++.+..++...... ..+. +++|+||||||||+++++++..+ +.+++.++|......
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 57999999999998888653211 1233 89999999999999999999998 678999998764321
Q ss_pred ---------c-------ccccH-HHHHHHHHHHHh-cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc
Q 003231 599 ---------W-------FGEDE-KNVRALFTLAAK-VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR 660 (837)
Q Consensus 599 ---------~-------~G~~e-~~l~~lf~~A~~-~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~ 660 (837)
. .+... .....+...... ..|.||||||++.+. ......|+..+......
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~------------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA------------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC------------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc------------hHHHHHHHHHHHhCCCC
Confidence 0 11111 222222222222 347899999999871 13445555555443211
Q ss_pred CCceEEEEEecCCC---CCCcHHHHHHHHH-hhhcCCCCHHHHHHHHHHHHhh----cCCChhhHHHHHHHc--------
Q 003231 661 NGERILVLAATNRP---FDLDEAIIRRFER-RIMVGLPSAENREMILKTLLAK----EKVEDLDFKELAAMT-------- 724 (837)
Q Consensus 661 ~~~~vlVIaTTN~~---~~Ld~aL~rRF~~-~I~~~~P~~eer~~IL~~~l~~----~~~~d~dl~~LA~~t-------- 724 (837)
...++.+|++||.+ ..+++.+.+||.. .+.|++++.++...+++..+.. ..+++..++.++..+
T Consensus 156 ~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 156 GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCT
T ss_pred CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCC
Confidence 11358888888887 6789999999965 7899999999999999988765 234778889999999
Q ss_pred -CCCCHHHHHHHHHHHHHHHHH
Q 003231 725 -EGYSGSDLKNLCVTAAYRPVR 745 (837)
Q Consensus 725 -~G~sg~DL~~L~~~Aa~~av~ 745 (837)
.| ..+.+.++|..|+..+..
T Consensus 236 ~~G-~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 236 NRG-DARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp TSC-CHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHHHHH
Confidence 44 567788888888776654
No 91
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.58 E-value=1.4e-14 Score=167.05 Aligned_cols=237 Identities=17% Similarity=0.211 Sum_probs=170.2
Q ss_pred cccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEE
Q 003231 59 QVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLL 138 (837)
Q Consensus 59 ~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll 138 (837)
.++... ..++|+++.++ ++.|..|.+.+.. ++++.. |..-=...+++|||+||+++++++||||+|++.+++++
T Consensus 20 ~~~~~~-~~~~f~dv~G~--~~~k~~l~~lv~~-l~~~~~--~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 20 RVLTEA-PKVTFKDVAGA--EEAKEELKEIVEF-LKNPSR--FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp EEECSC-CCCCTTSSCSC--HHHHHHHHHHHHH-HHCGGG--TTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred eeeccC-CCCCHHHcCCc--HHHHHHHHHHHHH-hhchhh--hhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 344444 78999999998 9999999988764 555433 21111245677999999999999999999999999999
Q ss_pred EeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccc
Q 003231 139 LLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHR 218 (837)
Q Consensus 139 ~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (837)
.++..+|...+ .|
T Consensus 94 ~i~g~~~~~~~---~g---------------------------------------------------------------- 106 (499)
T 2dhr_A 94 TASGSDFVEMF---VG---------------------------------------------------------------- 106 (499)
T ss_dssp EEEGGGGTSSC---TT----------------------------------------------------------------
T ss_pred EEehhHHHHhh---hh----------------------------------------------------------------
Confidence 99888774211 00
Q ss_pred cCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhh--------cHHHHHHH
Q 003231 219 RNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQ--------SQRFYNLL 290 (837)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~--------~~~~~~~l 290 (837)
....-+..+|+-+ ....|.||||||||.+... ..+....+
T Consensus 107 -----------------------------~~~~~v~~lfq~a---~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l 154 (499)
T 2dhr_A 107 -----------------------------VGAARVRDLFETA---KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL 154 (499)
T ss_dssp -----------------------------HHHHHHHHHTTTS---SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH
T ss_pred -----------------------------hHHHHHHHHHHHH---HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH
Confidence 0000122233222 2347999999999985421 23344455
Q ss_pred HHHHHhccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhH
Q 003231 291 DKLLKKLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNH 363 (837)
Q Consensus 291 k~~l~~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~ 363 (837)
..+|..++| .+++|++ +|++..+|++|.| ||...|.|++|+.++|..||+.++..
T Consensus 155 ~~LL~~Ldg~~~~~~viviAa-----tn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~------------- 216 (499)
T 2dhr_A 155 NQLLVEMDGFEKDTAIVVMAA-----TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------------- 216 (499)
T ss_dssp HHHHHHGGGCCSSCCCEEEEC-----CSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS-------------
T ss_pred HHHHHHhcccccCccEEEEEe-----cCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc-------------
Confidence 566665554 4678877 6777789999998 89999999999999999999875321
Q ss_pred HHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHh
Q 003231 364 IAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 364 i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
.....+++...|+..+.. +++.+|+.++..|+.++..++. -.|+.++|+.++...
T Consensus 217 ---~~l~~dv~l~~lA~~t~G---~~gadL~~lv~~Aa~~A~~~~~--------~~It~~dl~~al~~v 271 (499)
T 2dhr_A 217 ---KPLAEDVDLALLAKRTPG---FVGADLENLLNEAALLAAREGR--------RKITMKDLEEAADRV 271 (499)
T ss_dssp ---SCCCCSSTTHHHHTTSCS---CCHHHHHHHHHHHHHHHTTTCC--------SSCCSHHHHHHHHHH
T ss_pred ---CCCChHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhCC--------CccCHHHHHHHHHHH
Confidence 123456677888888888 8999999999999888764332 248899999999843
No 92
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.7e-14 Score=157.14 Aligned_cols=159 Identities=11% Similarity=0.104 Sum_probs=116.9
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----------GASFINVSMSTIT 596 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----------g~~~i~v~~s~l~ 596 (837)
|.|.++..+.|..++...+.. ..+.+++|+||||||||++++++++++ .+.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 788888888888777653321 356889999999999999999999998 4678999987754
Q ss_pred cc----------c------ccccHHHHHHHHHHH--HhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc
Q 003231 597 SK----------W------FGEDEKNVRALFTLA--AKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL 658 (837)
Q Consensus 597 s~----------~------~G~~e~~l~~lf~~A--~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~ 658 (837)
+. . .+.....+..+|... ....+.||||||+|.|.. + .++..|+...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~-------q----~~L~~l~~~~---- 157 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS-------E----KILQYFEKWI---- 157 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC-------T----HHHHHHHHHH----
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc-------c----hHHHHHHhcc----
Confidence 43 1 233456677788764 345678999999999961 1 2333333321
Q ss_pred ccCCceEEEEEecCCCCCC----cHHHHHHHH-HhhhcCCCCHHHHHHHHHHHHhh
Q 003231 659 TRNGERILVLAATNRPFDL----DEAIIRRFE-RRIMVGLPSAENREMILKTLLAK 709 (837)
Q Consensus 659 ~~~~~~vlVIaTTN~~~~L----d~aL~rRF~-~~I~~~~P~~eer~~IL~~~l~~ 709 (837)
.....+++||+++|..+.. ++++++||. .+|.|++++.++...|++..+..
T Consensus 158 ~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 158 SSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 2244579999999997653 445677986 57999999999999999988876
No 93
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.57 E-value=2.2e-14 Score=158.46 Aligned_cols=192 Identities=23% Similarity=0.299 Sum_probs=141.1
Q ss_pred hHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 505 EFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 505 e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.|..++++. +|++++|++++++.+...+... +.++.+||+||||||||++|+++|+.++
T Consensus 5 ~l~~k~rp~---------~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 5 VLARKWRPQ---------TFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHTCCC---------STTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHhhCCC---------chhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356666766 7899999999999999888541 3456799999999999999999999885
Q ss_pred Cc------------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEecccccccCCCCC
Q 003231 585 AS------------------------FINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDSMLGQRTR 636 (837)
Q Consensus 585 ~~------------------------~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~L~~~r~~ 636 (837)
.. ++.++...- .....++.++..+.. ..+.||||||+|.+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~---- 133 (373)
T 1jr3_A 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---- 133 (373)
T ss_dssp CTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH----
T ss_pred CCCCCCCCCCcccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH----
Confidence 42 233332210 111235556665543 2368999999998832
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--Ch
Q 003231 637 VGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--ED 714 (837)
Q Consensus 637 ~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~d 714 (837)
...+.|+..++. ...++++|++|+.+..+.+.+++|+ ..+.++.|+.++...+++.++...++ ++
T Consensus 134 --------~~~~~Ll~~le~----~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~ 200 (373)
T 1jr3_A 134 --------HSFNALLKTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 (373)
T ss_dssp --------HHHHHHHHHHHS----CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCH
T ss_pred --------HHHHHHHHHHhc----CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 233455555543 2345788888888888999999998 78899999999999999999887665 67
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003231 715 LDFKELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 715 ~dl~~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
..+..++..+.| +.+++.+++..+..
T Consensus 201 ~a~~~l~~~~~G-~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 201 RALQLLARAAEG-SLRDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 778889999977 67788888876653
No 94
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.57 E-value=9.5e-16 Score=162.33 Aligned_cols=233 Identities=17% Similarity=0.238 Sum_probs=160.6
Q ss_pred cCCCccccccccccccccHHHHHHHHHHHHhhcccccc-cccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEE
Q 003231 61 LDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEI-SKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLL 139 (837)
Q Consensus 61 v~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ 139 (837)
++++...++|+++.++ +..+..|.+.+. .+++++. .+++ ...+++|||+||+++++++||||||++.+.+++.
T Consensus 1 i~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 1 INAEKPNVRFKDMAGN--EEAKEEVVEIVD-FLKYPERYANLG---AKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CCCCCCCCCSTTSSSC--TTTHHHHHHHHH-HHHCHHHHHHHS---CCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CCccCCCCCHHHhCCc--HHHHHHHHHHHH-HHHChHHHHHCC---CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4667788999999998 888888888655 3666654 2222 2456779999999999999999999999999888
Q ss_pred eeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCccccc
Q 003231 140 LDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRR 219 (837)
Q Consensus 140 ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (837)
++..++...+ .|.+.+
T Consensus 75 v~~~~~~~~~---~~~~~~------------------------------------------------------------- 90 (268)
T 2r62_A 75 MGGSSFIEMF---VGLGAS------------------------------------------------------------- 90 (268)
T ss_dssp CCSCTTTTSC---SSSCSS-------------------------------------------------------------
T ss_pred echHHHHHhh---cchHHH-------------------------------------------------------------
Confidence 8776664321 010000
Q ss_pred CCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHH---------HHHHH
Q 003231 220 NASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQR---------FYNLL 290 (837)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~---------~~~~l 290 (837)
.+..+|+.+.. ..|.||||||+|.+...+.. ....+
T Consensus 91 --------------------------------~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~ 135 (268)
T 2r62_A 91 --------------------------------RVRDLFETAKK---QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTL 135 (268)
T ss_dssp --------------------------------SSSTTHHHHHH---SCSCEEEESCGGGTTC----------CCCSCSST
T ss_pred --------------------------------HHHHHHHHHHh---cCCeEEEEeChhhhcccccccccCCCchhHHHHH
Confidence 00013333333 37999999999996532210 00112
Q ss_pred HHHHHhc------cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchh
Q 003231 291 DKLLKKL------SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKN 362 (837)
Q Consensus 291 k~~l~~l------~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~ 362 (837)
..+|..+ .++|++||+ +|....+|.++.| ||...|.|++|+.++|..||+.++..
T Consensus 136 ~~ll~~l~~~~~~~~~v~vi~t-----tn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~------------ 198 (268)
T 2r62_A 136 NQLLAEMDGFGSENAPVIVLAA-----TNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG------------ 198 (268)
T ss_dssp TTTTTTTTCSSCSCSCCEEEEC-----BSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS------------
T ss_pred HHHHHHhhCcccCCCCEEEEEe-----cCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc------------
Confidence 2223322 235889987 5666778999999 99999999999999999999875421
Q ss_pred HHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 363 HIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 363 ~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
.-...+.+...|..++.+ +++.+|..++..|..++..... -.|+.++|..++.
T Consensus 199 ----~~~~~~~~~~~la~~~~g---~~g~dl~~l~~~a~~~a~~~~~--------~~i~~~~~~~a~~ 251 (268)
T 2r62_A 199 ----VKLANDVNLQEVAKLTAG---LAGADLANIINEAALLAGRNNQ--------KEVRQQHLKEAVE 251 (268)
T ss_dssp ----SCCCSSCCTTTTTSSSCS---SCHHHHHHHHHHHHHTTSSSCC--------CSCCHHHHHTSCT
T ss_pred ----CCCCCccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhcc--------CCcCHHHHHHHHH
Confidence 011245566777777777 8999999999999888764332 2388899988877
No 95
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.56 E-value=7e-14 Score=146.98 Aligned_cols=230 Identities=16% Similarity=0.191 Sum_probs=161.3
Q ss_pred CCccccccccccccccHHHHHHHHHHHHhhcccccc-cccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEee
Q 003231 63 GKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEI-SKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLD 141 (837)
Q Consensus 63 ~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld 141 (837)
.+.-.++|+++.++ ++.+..|...... +.++.. .... + ..+++|||+||+++++++|+||||+..++.++.++
T Consensus 8 ~~~~~~~~~~i~g~--~~~~~~l~~l~~~-~~~~~~~~~~~--~-~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 8 TEAPKVTFKDVAGA--EEAKEELKEIVEF-LKNPSRFHEMG--A-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp CCCCSCCGGGCCSC--HHHHHHHHHHHHH-HHCHHHHHHTT--C-CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCCCHHHhCCc--HHHHHHHHHHHHH-HHCHHHHHHcC--C-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 56678999999998 9999888876654 344332 2211 2 34567999999999999999999999998888887
Q ss_pred ccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCC
Q 003231 142 VNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNA 221 (837)
Q Consensus 142 ~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (837)
..++...+
T Consensus 82 ~~~~~~~~------------------------------------------------------------------------ 89 (254)
T 1ixz_A 82 GSDFVEMF------------------------------------------------------------------------ 89 (254)
T ss_dssp HHHHHHSC------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 76653211
Q ss_pred CCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhh--------cHHHHHHHHHH
Q 003231 222 SDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQ--------SQRFYNLLDKL 293 (837)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~--------~~~~~~~lk~~ 293 (837)
......-+..+|+-+. ...|.|+||||||.+... ..+....+..+
T Consensus 90 ------------------------~~~~~~~i~~~~~~~~---~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l 142 (254)
T 1ixz_A 90 ------------------------VGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 142 (254)
T ss_dssp ------------------------TTHHHHHHHHHHHHHT---TSSSEEEEEETHHHHHC---------CHHHHHHHHHH
T ss_pred ------------------------hhHHHHHHHHHHHHHH---hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH
Confidence 0000112333444443 347999999999986432 12233444555
Q ss_pred HHhccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 003231 294 LKKLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAE 366 (837)
Q Consensus 294 l~~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~ 366 (837)
+..++| .++++++ ++++..+|+++.| ||...|.|++|+.++|.+||+.++. .
T Consensus 143 l~~l~g~~~~~~~i~~a~-----t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~----~------------ 201 (254)
T 1ixz_A 143 LVEMDGFEKDTAIVVMAA-----TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR----G------------ 201 (254)
T ss_dssp HHHHHTCCTTCCEEEEEE-----ESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT----T------------
T ss_pred HHHHhCCCCCCCEEEEEc-----cCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc----C------------
Confidence 555544 2456665 5667789999998 9999999999999999999986431 0
Q ss_pred HhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHH
Q 003231 367 VLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGL 429 (837)
Q Consensus 367 vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l 429 (837)
.....+.+...|+..+.. +++.+|+.++..|+.++..... -.|+.++|+.++
T Consensus 202 ~~~~~~~~~~~la~~~~G---~~~~dl~~~~~~a~~~a~~~~~--------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 202 KPLAEDVDLALLAKRTPG---FVGADLENLLNEAALLAAREGR--------RKITMKDLEEAA 253 (254)
T ss_dssp SCBCTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHT
T ss_pred CCCCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhcC--------CCcCHHHHHHHh
Confidence 112345667778888888 8999999999999888875432 238899998875
No 96
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=4.8e-14 Score=155.07 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=127.9
Q ss_pred cccccccchHHHHHHHHHH-HcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------
Q 003231 523 TFADIGALNEIKESLQELV-MLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGA---------------- 585 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i-~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~---------------- 585 (837)
+|++++|++.+++.+..++ .. + +.+. ++|+||+|+|||++++++|.++..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 8999999999998887765 22 0 2333 999999999999999999996511
Q ss_pred -------------cEEEEeccccccccccccHHHHHHHHHHHH--------------hcCCeEEEecccccccCCCCCcc
Q 003231 586 -------------SFINVSMSTITSKWFGEDEKNVRALFTLAA--------------KVSPTIIFVDEVDSMLGQRTRVG 638 (837)
Q Consensus 586 -------------~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~--------------~~~psVLfIDEID~L~~~r~~~~ 638 (837)
+++.++.++.. ......++..+..+. ...|.||+|||++.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~------ 148 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK------ 148 (354)
T ss_dssp -------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH------
T ss_pred ccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH------
Confidence 12223222210 001112444444432 22567999999998621
Q ss_pred hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC--C-hh
Q 003231 639 EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV--E-DL 715 (837)
Q Consensus 639 ~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~--~-d~ 715 (837)
...+.++..++.. ..+..+|.+|+.+..+.+.+++|| ..+.|+.|+.+++..+++.++..+++ + +.
T Consensus 149 ------~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (354)
T 1sxj_E 149 ------DAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKD 217 (354)
T ss_dssp ------HHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSH
T ss_pred ------HHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHH
Confidence 2234444444432 224678888899999999999999 88999999999999999999988776 6 78
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 003231 716 DFKELAAMTEGYSGSDLKNLCVTAAYR 742 (837)
Q Consensus 716 dl~~LA~~t~G~sg~DL~~L~~~Aa~~ 742 (837)
.+..++..+.| +.+++.++++.++..
T Consensus 218 ~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 218 ILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 88999999876 556666666655543
No 97
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.53 E-value=2.4e-13 Score=145.18 Aligned_cols=230 Identities=16% Similarity=0.192 Sum_probs=161.8
Q ss_pred CccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeecc
Q 003231 64 KDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVN 143 (837)
Q Consensus 64 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~ 143 (837)
+.-.++|++|.++ ++.+..|...... +..+...+-. ++ ..+++|||+||+++++++|+||||+..+..++.++..
T Consensus 33 ~~~~~~~~~i~g~--~~~~~~l~~l~~~-~~~~~~l~~~-~~-~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~ 107 (278)
T 1iy2_A 33 EAPKVTFKDVAGA--EEAKEELKEIVEF-LKNPSRFHEM-GA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 107 (278)
T ss_dssp CCCCCCGGGSSSC--HHHHHHHHHHHHH-HHCHHHHHHT-TC-CCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCHHHhCCh--HHHHHHHHHHHHH-HHCHHHHHHc-CC-CCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHH
Confidence 3368999999998 9999888876654 3333221111 12 3456699999999999999999999999888888876
Q ss_pred ccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCC
Q 003231 144 DFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASD 223 (837)
Q Consensus 144 ~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (837)
++...+ .
T Consensus 108 ~~~~~~---~---------------------------------------------------------------------- 114 (278)
T 1iy2_A 108 DFVEMF---V---------------------------------------------------------------------- 114 (278)
T ss_dssp HHHHST---T----------------------------------------------------------------------
T ss_pred HHHHHH---h----------------------------------------------------------------------
Confidence 653211 0
Q ss_pred cccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhh--------cHHHHHHHHHHHH
Q 003231 224 MSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQ--------SQRFYNLLDKLLK 295 (837)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~--------~~~~~~~lk~~l~ 295 (837)
.....-+..+|+-+.. ..|.|+||||||.+... ..+....+..++.
T Consensus 115 -----------------------~~~~~~i~~~~~~~~~---~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 168 (278)
T 1iy2_A 115 -----------------------GVGAARVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 168 (278)
T ss_dssp -----------------------THHHHHHHHHHHHHHT---SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHH
T ss_pred -----------------------hHHHHHHHHHHHHHHh---cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHH
Confidence 0001123345554443 37999999999986432 1234455556666
Q ss_pred hccC-----CEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 003231 296 KLSG-----SVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVL 368 (837)
Q Consensus 296 ~l~g-----~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl 368 (837)
.++| .++++++ ++++..+|+++.| ||...|+|++|+.++|.+||+.++.. ..
T Consensus 169 ~lsgg~~~~~~i~~a~-----t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~----------------~~ 227 (278)
T 1iy2_A 169 EMDGFEKDTAIVVMAA-----TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG----------------KP 227 (278)
T ss_dssp HHTTCCTTCCEEEEEE-----ESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT----------------SC
T ss_pred HHhCCCCCCCEEEEEe-----cCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc----------------CC
Confidence 6665 2556665 5667789999998 99999999999999999999964311 11
Q ss_pred hcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHH
Q 003231 369 AANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGL 429 (837)
Q Consensus 369 ~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l 429 (837)
...+.++..|+..+.. +++.+|+.++..|+.++..... -.|+.++|+.++
T Consensus 228 ~~~~~~~~~la~~~~G---~~~~dl~~l~~~a~~~a~~~~~--------~~I~~~dl~~a~ 277 (278)
T 1iy2_A 228 LAEDVDLALLAKRTPG---FVGADLENLLNEAALLAAREGR--------RKITMKDLEEAA 277 (278)
T ss_dssp BCTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTTC--------CSBCHHHHHHHT
T ss_pred CCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhCC--------CCcCHHHHHHHh
Confidence 2345667788888888 8999999999999888865432 248899998876
No 98
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.52 E-value=1.1e-13 Score=146.34 Aligned_cols=193 Identities=15% Similarity=0.167 Sum_probs=112.5
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG---ASFINVSMSTITSK 598 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~~s~l~s~ 598 (837)
.+|++++|.+.....+.+.+.... ....++||+||||||||++|++++..+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 378999999999988887775521 2346899999999999999999999884 78999999887432
Q ss_pred -----cccccHHHH-------HHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------
Q 003231 599 -----WFGEDEKNV-------RALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT------- 659 (837)
Q Consensus 599 -----~~G~~e~~l-------~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~------- 659 (837)
.+|...... ...+.. ..+++||||||+.+.. .....|+..++....
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM------------MVQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH------------HHHHHHHHHHHHCEECCCCC--
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH------------HHHHHHHHHHHhCCeecCCCcc
Confidence 122211100 112222 2358999999998843 233444444443210
Q ss_pred cCCceEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHH----HHHHHHHHHHhh----cC------CChhhHH
Q 003231 660 RNGERILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAE----NREMILKTLLAK----EK------VEDLDFK 718 (837)
Q Consensus 660 ~~~~~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~e----er~~IL~~~l~~----~~------~~d~dl~ 718 (837)
....++.||+|||.+ ..+.+.+.+||. .+.+..|+.. +...+++.++.. .+ +++..+.
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 011347889999984 357899999994 2344445443 444555554432 22 2444444
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHH
Q 003231 719 ELAAMTEGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 719 ~LA~~t~G~sg~DL~~L~~~Aa~ 741 (837)
.|....-....++|.+++..++.
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHH
Confidence 45443212245677777766554
No 99
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.50 E-value=3e-14 Score=163.71 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=111.3
Q ss_pred HHHHHHHhhcCCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCC
Q 003231 256 LYKVLVSITETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLP 335 (837)
Q Consensus 256 L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P 335 (837)
+..++..+.+.+|.||||| +..++.++|++.|++ |.++|||+|+.+++++...+|++|.+||. .|.|++|
T Consensus 256 ~~~~~~~~~~~~~~iLfiD-------~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p 325 (468)
T 3pxg_A 256 LKKVMDEIRQAGNIILFID-------AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQP 325 (468)
T ss_dssp HHHHHHHHHTCCCCEEEEC-------C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCC
T ss_pred HHHHHHHHHhcCCeEEEEe-------CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCC
Confidence 4445555555689999999 678899999999996 89999999999998888889999999997 7999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccC
Q 003231 336 EDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRN 415 (837)
Q Consensus 336 ~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~ 415 (837)
+.+++..||+.++.++...+......+.+. .+..++..|+.|+++|+++|+.++.++...++.....|.
T Consensus 326 ~~e~~~~iL~~~~~~~~~~~~~~i~~~al~--------~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~--- 394 (468)
T 3pxg_A 326 SVDESIQILQGLRDRYEAHHRVSITDDAIE--------AAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPP--- 394 (468)
T ss_dssp CHHHHHHHHHHTTTTSGGGSSCSCCHHHHH--------HHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCS---
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHH--------HHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCch---
Confidence 999999999987655554443333333332 577788999999999999999999999888886655443
Q ss_pred CceeecHHhHHHHHHHhh
Q 003231 416 GKLVISSKSLSHGLSIFQ 433 (837)
Q Consensus 416 ~~~~i~~~~~~~~l~~~~ 433 (837)
..+.++..+..++
T Consensus 395 -----~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 395 -----NLKELEQKLDEVR 407 (468)
T ss_dssp -----STHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 1245555555443
No 100
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=4.4e-13 Score=147.28 Aligned_cols=188 Identities=23% Similarity=0.276 Sum_probs=134.2
Q ss_pred CchHHHhhCCCccCCCCCCccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 503 DNEFEKRIRPEVIPANEIGVTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 503 ~~e~~~~l~~~~i~~~~~~v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...|..+++|. +|++++|++.+++.|...+... +. .+++|+||||||||++|+++|..
T Consensus 12 ~~~~~~k~rp~---------~~~~~~g~~~~~~~L~~~i~~g------------~~-~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 12 NLPWVEKYRPE---------TLDEVYGQNEVITTVRKFVDEG------------KL-PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCHHHHTCCS---------SGGGCCSCHHHHHHHHHHHHTT------------CC-CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCchHHHhCCC---------cHHHhcCcHHHHHHHHHHHhcC------------CC-ceEEEECCCCCCHHHHHHHHHHH
Confidence 34688899888 8999999999999998888641 22 24999999999999999999998
Q ss_pred hC-----CcEEEEeccccccccccccHHHHHHHHHHHHh------cCCeEEEecccccccCCCCCcchHHHHHHHHHHHH
Q 003231 583 AG-----ASFINVSMSTITSKWFGEDEKNVRALFTLAAK------VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFM 651 (837)
Q Consensus 583 lg-----~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~------~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll 651 (837)
+. ..++.+++++..+ ...++..+..... ..+.|++|||+|.+.. ...+.|+
T Consensus 70 l~~~~~~~~~~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~ 131 (340)
T 1sxj_C 70 IYGKNYSNMVLELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------AAQNALR 131 (340)
T ss_dssp HHTTSHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------HHHHHHH
T ss_pred HcCCCccceEEEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------HHHHHHH
Confidence 73 3467777765321 2233333333221 1368999999998842 1234444
Q ss_pred HhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcC--CChhhHHHHHHHcCCCCH
Q 003231 652 THWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEK--VEDLDFKELAAMTEGYSG 729 (837)
Q Consensus 652 ~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~--~~d~dl~~LA~~t~G~sg 729 (837)
..++.. ...+.+|++||.+..+.+++++|| ..+.|..++.++...++..++...+ +++..+..++..+.|- .
T Consensus 132 ~~le~~----~~~~~~il~~n~~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~-~ 205 (340)
T 1sxj_C 132 RVIERY----TKNTRFCVLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGD-M 205 (340)
T ss_dssp HHHHHT----TTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTC-H
T ss_pred HHHhcC----CCCeEEEEEecCccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 444432 234567778899999999999999 4788999999999999999886555 3777788888887763 3
Q ss_pred HHHHHHH
Q 003231 730 SDLKNLC 736 (837)
Q Consensus 730 ~DL~~L~ 736 (837)
+.+.+++
T Consensus 206 r~~~~~l 212 (340)
T 1sxj_C 206 RRVLNVL 212 (340)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3443443
No 101
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=1.6e-14 Score=170.54 Aligned_cols=166 Identities=22% Similarity=0.297 Sum_probs=104.5
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE----eccccccccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINV----SMSTITSKWFGE 602 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v----~~s~l~s~~~G~ 602 (837)
|+|++++++.+..++.... +........+...++||+||||||||++|+++|..++..++.. ++..+.......
T Consensus 297 I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred hcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 8999999888754443211 0101112223445899999999999999999999997665542 223332221111
Q ss_pred cHH----HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccc---------ccCCceEEEEE
Q 003231 603 DEK----NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLL---------TRNGERILVLA 669 (837)
Q Consensus 603 ~e~----~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~---------~~~~~~vlVIa 669 (837)
... .....+..| ..+||||||||++.+ ...+.|+..|+... ...+.++.||+
T Consensus 375 ~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 375 KGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp GGTSSCSEEECHHHHH---SSSEECCTTTTCCCS------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred cccccccccCCeeEec---CCCcEEeehhhhCCH------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence 000 001122233 348999999999843 33445555555322 12234688999
Q ss_pred ecCCCC-------------CCcHHHHHHHHHh-hhcCCCCHHHHHHHHHHHHhhc
Q 003231 670 ATNRPF-------------DLDEAIIRRFERR-IMVGLPSAENREMILKTLLAKE 710 (837)
Q Consensus 670 TTN~~~-------------~Ld~aL~rRF~~~-I~~~~P~~eer~~IL~~~l~~~ 710 (837)
|||++. .+++++++||+.. +..+.|+.+ ...|+++++..+
T Consensus 440 atNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 440 AGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 999986 8999999999754 455777777 888888887654
No 102
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.46 E-value=1.1e-13 Score=159.60 Aligned_cols=193 Identities=16% Similarity=0.125 Sum_probs=121.1
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-----ccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG--ASFINVSMST-----ITSKW 599 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg--~~~i~v~~s~-----l~s~~ 599 (837)
|+|++++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+.+.- +.+.+
T Consensus 24 ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp CSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 89999999888776643 35899999999999999999999884 4666655532 22212
Q ss_pred ccccHHHHHHHHHHHHhc---CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccc-------cccCCceEEEEE
Q 003231 600 FGEDEKNVRALFTLAAKV---SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGL-------LTRNGERILVLA 669 (837)
Q Consensus 600 ~G~~e~~l~~lf~~A~~~---~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~-------~~~~~~~vlVIa 669 (837)
.+..... ...|..+... .++|||||||+++.+ .+.+.|+..|+.. ....+.+ ++|+
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~------------~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ 154 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP------------AILNTLLTAINERQFRNGAHVEKIPMR-LLVA 154 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGCCH------------HHHHHHHHHHHSSEEECSSSEEECCCC-EEEE
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH------------HHHHHHHHHHHHHhccCCCCcCCcchh-hhhh
Confidence 1111111 1222222111 367999999987632 4445566655422 1122233 4567
Q ss_pred ecCCCC---CCcHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHh-------------------------hcCCChhhHHHH
Q 003231 670 ATNRPF---DLDEAIIRRFERRIMVGLPSA-ENREMILKTLLA-------------------------KEKVEDLDFKEL 720 (837)
Q Consensus 670 TTN~~~---~Ld~aL~rRF~~~I~~~~P~~-eer~~IL~~~l~-------------------------~~~~~d~dl~~L 720 (837)
|||.+. .+.+++++||...+.+++|+. +++..|++.... ...+++..++.+
T Consensus 155 ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i 234 (500)
T 3nbx_X 155 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELI 234 (500)
T ss_dssp EESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred ccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHH
Confidence 777542 245799999988899999987 778888875432 112244445555
Q ss_pred HHHc---------CCCCHHHHHHHHHHHHHHHHHHHH
Q 003231 721 AAMT---------EGYSGSDLKNLCVTAAYRPVRELI 748 (837)
Q Consensus 721 A~~t---------~G~sg~DL~~L~~~Aa~~av~r~~ 748 (837)
+... .|.+.+.+..+++.|...|..+..
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr 271 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGR 271 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCC
Confidence 5554 377888888888877777665543
No 103
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.43 E-value=6e-13 Score=143.58 Aligned_cols=190 Identities=10% Similarity=0.100 Sum_probs=123.0
Q ss_pred cccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchhhhhhc
Q 003231 74 PYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLKMQNKY 153 (837)
Q Consensus 74 pyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~~~~~~ 153 (837)
-||+++.....+. +|+...-+.. . -...+++|||+||+++++++||||+|++.|++++.++.+++..++
T Consensus 8 ~~y~~~~~~~~~~----~~~~k~~l~~--~-~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~---- 76 (293)
T 3t15_A 8 GFYIAPAFMDKLV----VHITKNFLKL--P-NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGN---- 76 (293)
T ss_dssp TEECCHHHHHHHH----HHHHHTTSCC--T-TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC-----
T ss_pred cccCCHHHHHHHH----HHHHHHHHhc--C-CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhcc----
Confidence 3777775555443 3332221110 0 124567899999999999999999999999999999987774322
Q ss_pred CCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCcccccCCCCC
Q 003231 154 GCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSISSLGAS 233 (837)
Q Consensus 154 g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (837)
T Consensus 77 -------------------------------------------------------------------------------- 76 (293)
T 3t15_A 77 -------------------------------------------------------------------------------- 76 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCccccchHHHHHHHHHHHHHh-hcCCcEEEEEccchhHhhhcH----------HHHHHHHHHHHhc-----
Q 003231 234 PSPAPLKRISSWCFDEKLFLQSLYKVLVSI-TETSSVILYLRDVDKLLFQSQ----------RFYNLLDKLLKKL----- 297 (837)
Q Consensus 234 ~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~-~~~~p~Ilfi~di~~~l~~~~----------~~~~~lk~~l~~l----- 297 (837)
.++..-.+..+|+-+... .+..|+||||||||++..... +..+.|-..|+..
T Consensus 77 ------------~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 144 (293)
T 3t15_A 77 ------------AGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 144 (293)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC----
T ss_pred ------------CchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccccccc
Confidence 111111334445444322 356899999999999664221 2335555555411
Q ss_pred --------cCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 003231 298 --------SGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEV 367 (837)
Q Consensus 298 --------~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~v 367 (837)
..+|+||++ +|+...+|++|.| ||...|. +|+.++|..||+.++
T Consensus 145 ~~~~~~~~~~~v~vI~t-----tN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~------------------- 198 (293)
T 3t15_A 145 PGMYNKQENARVPIIVT-----GNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIF------------------- 198 (293)
T ss_dssp -------CCCCCCEEEE-----CSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHH-------------------
T ss_pred ccccccccCCCcEEEEe-----cCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhc-------------------
Confidence 247888887 7788899999997 8875565 799999999999643
Q ss_pred hhcCCCChhHHhhcccCCCCCChhhHHHH
Q 003231 368 LAANDLECDDLGSICQADTMVLSNYIEEI 396 (837)
Q Consensus 368 l~~~~~~~~dL~~~~~~d~~l~~~~Ie~i 396 (837)
...+++..++..++.. |++++|+.+
T Consensus 199 -~~~~~~~~~l~~~~~~---~~~~~l~~~ 223 (293)
T 3t15_A 199 -RTDNVPAEDVVKIVDN---FPGQSIDFF 223 (293)
T ss_dssp -GGGCCCHHHHHHHHHH---SCSCCHHHH
T ss_pred -cCCCCCHHHHHHHhCC---CCcccHHHH
Confidence 1346778888888888 888888754
No 104
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.41 E-value=6.5e-13 Score=144.15 Aligned_cols=191 Identities=15% Similarity=0.217 Sum_probs=123.1
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK---- 598 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~---- 598 (837)
+|+|.+...+.+.+.+.... ....++||+||||||||++|++++... +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 58999999888888876521 235689999999999999999999976 689999999886542
Q ss_pred -cccccH-------HHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------cCCc
Q 003231 599 -WFGEDE-------KNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-------RNGE 663 (837)
Q Consensus 599 -~~G~~e-------~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~ 663 (837)
.+|... ......|..+. .++||||||+.+.. .....|+..++.... ....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP------------LMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH------------HHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH------------HHHHHHHHHHhcCEeeecCCcccccC
Confidence 222210 01123344443 48999999998842 233445555543321 1123
Q ss_pred eEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCHH----HHHHHHHHHHhhc---------CCChhhHHHHHHH
Q 003231 664 RILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSAE----NREMILKTLLAKE---------KVEDLDFKELAAM 723 (837)
Q Consensus 664 ~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~e----er~~IL~~~l~~~---------~~~d~dl~~LA~~ 723 (837)
++.||+|||.. ..+++.+..||. .+.+..|+.. +...++++++... .+++..++.|...
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 57899999985 356788889994 5555555544 4445666655431 1255556666665
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 003231 724 TEGYSGSDLKNLCVTAAYRP 743 (837)
Q Consensus 724 t~G~sg~DL~~L~~~Aa~~a 743 (837)
.-.-..++|.+++..|+..+
T Consensus 216 ~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 41225578888887776543
No 105
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.38 E-value=1.3e-12 Score=125.94 Aligned_cols=131 Identities=10% Similarity=0.135 Sum_probs=90.6
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGE 602 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~ 602 (837)
+++|.+...+.+.+.+.... ....++||+||||||||++|++++... +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 47899998888888776521 234679999999999999999999987 78999 999887654
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC-------C
Q 003231 603 DEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP-------F 675 (837)
Q Consensus 603 ~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~-------~ 675 (837)
......+..+. .++|||||||.+.. .....++..+.. ...++.+|+|||.+ .
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~------------~~q~~Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTR------------EQQYHLVQLQSQ----EHRPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCH------------HHHHHHHHHHHS----SSCSSCEEEEESSCHHHHHHHS
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCH------------HHHHHHHHHHhh----cCCCEEEEEECCcCHHHHHHcC
Confidence 22344555553 48999999998842 223344444422 22346788888874 3
Q ss_pred CCcHHHHHHHHHhhhcCCC
Q 003231 676 DLDEAIIRRFERRIMVGLP 694 (837)
Q Consensus 676 ~Ld~aL~rRF~~~I~~~~P 694 (837)
.+.+.+..|+. .+.+..|
T Consensus 125 ~~~~~L~~rl~-~~~i~lP 142 (145)
T 3n70_A 125 HIIAELYYCFA-MTQIACL 142 (145)
T ss_dssp CCCHHHHHHHH-HHEEECC
T ss_pred CCCHHHHHHhc-CCEEeCC
Confidence 57788888874 3444444
No 106
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.33 E-value=1.3e-11 Score=135.49 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=123.1
Q ss_pred cchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 003231 529 ALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS---------------------- 586 (837)
Q Consensus 529 G~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~---------------------- 586 (837)
-++++.+.+...+... +.++.+||+||||+|||++|+++|+.+...
T Consensus 6 w~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3466677777766541 456779999999999999999999988532
Q ss_pred --EEEEeccccccccccccHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc
Q 003231 587 --FINVSMSTITSKWFGEDEKNVRALFTLAAKV----SPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR 660 (837)
Q Consensus 587 --~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~----~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~ 660 (837)
++.+++.+- + -......++.+++.+... .+.|++|||+|.|.. ...+.|+..++.
T Consensus 74 ~d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~------------~a~naLLk~lEe---- 134 (334)
T 1a5t_A 74 PDYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD------------AAANALLKTLEE---- 134 (334)
T ss_dssp TTEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH------------HHHHHHHHHHTS----
T ss_pred CCEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH------------HHHHHHHHHhcC----
Confidence 344433210 0 012234566777766543 368999999999842 234566666654
Q ss_pred CCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 003231 661 NGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVTA 739 (837)
Q Consensus 661 ~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~~d~dl~~LA~~t~G~sg~DL~~L~~~A 739 (837)
++.++++|.+||.+..+.+.+++|+ ..+.|+.|+.++...+++... .+++..+..++..+.| +.+.+.+++..+
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred CCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 3445788888888999999999999 679999999999999888765 4567777888888877 444555554433
No 107
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.32 E-value=4.3e-13 Score=129.09 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=83.5
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHH
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEK 605 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~ 605 (837)
+++|.+...+.+.+.+.... ....++||+||||||||++|++++...+ +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 47899999998888876521 2345799999999999999999999888 99999998875543
Q ss_pred HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC-CC----CcHH
Q 003231 606 NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP-FD----LDEA 680 (837)
Q Consensus 606 ~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~-~~----Ld~a 680 (837)
...++..+. .++|||||+|.+.. .....++..++... ..++.+|+|||.+ .. +++.
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~------------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSR------------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCH------------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHH
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCH------------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHH
Confidence 344555543 48999999998843 22233444444321 2346788888764 33 3444
Q ss_pred HHHHH
Q 003231 681 IIRRF 685 (837)
Q Consensus 681 L~rRF 685 (837)
+..||
T Consensus 128 L~~rl 132 (143)
T 3co5_A 128 LAGLF 132 (143)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 55554
No 108
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.23 E-value=6.7e-11 Score=140.03 Aligned_cols=47 Identities=30% Similarity=0.413 Sum_probs=41.8
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.|++++|++.+++.+...+.. ..+++|+||||||||++|+++|..+.
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 789999999999988887753 35899999999999999999999884
No 109
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=1e-10 Score=126.84 Aligned_cols=142 Identities=13% Similarity=0.147 Sum_probs=106.2
Q ss_pred cchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEeccccccccccc
Q 003231 529 ALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA------GASFINVSMSTITSKWFGE 602 (837)
Q Consensus 529 G~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el------g~~~i~v~~s~l~s~~~G~ 602 (837)
|++++.+.|...+... + .+++||+||||+|||++|+++|+.+ ...++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 6788888988888652 2 5689999999999999999999874 346777776421 12
Q ss_pred cHHHHHHHHHHHHhcC----CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCc
Q 003231 603 DEKNVRALFTLAAKVS----PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLD 678 (837)
Q Consensus 603 ~e~~l~~lf~~A~~~~----psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld 678 (837)
....++.+++.+...+ ..|+||||+|.|.. ...+.|+..++. ++.++++|.+|+.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~------------~a~naLLk~LEe----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ------------QAANAFLKALEE----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH------------HHHHHTHHHHHS----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH------------HHHHHHHHHHhC----CCCCeEEEEEECChHhCh
Confidence 3345777888876544 47999999999842 234566666654 334567777778889999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 003231 679 EAIIRRFERRIMVGLPSAENREMILKTLL 707 (837)
Q Consensus 679 ~aL~rRF~~~I~~~~P~~eer~~IL~~~l 707 (837)
+++++| .+.|+.|+.++...+++..+
T Consensus 127 ~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 999999 89999999999999998876
No 110
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.22 E-value=1.5e-10 Score=129.20 Aligned_cols=206 Identities=14% Similarity=0.071 Sum_probs=130.0
Q ss_pred cccccchHHHHHHHHHH-HcccCCchhhcCCCCCCCceEEE--EcCCCChHHHHHHHHHHHh---------CCcEEEEec
Q 003231 525 ADIGALNEIKESLQELV-MLPLRRPDLFKGGLLKPCRGILL--FGPPGTGKTMLAKAIANEA---------GASFINVSM 592 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i-~~~l~~~e~~~~~~~~p~~~iLL--~GPpGtGKT~LAralA~el---------g~~~i~v~~ 592 (837)
++++|.++..+.|..++ ......+. ..+..++| +||||+|||++++.+++.+ +..++.++|
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~-------~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAG-------LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSC-------BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCC-------CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 46899999999988887 54221100 13467899 9999999999999999876 567788887
Q ss_pred cccccc---------cc-------cccH-HHHHHHHHHHH-hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhh
Q 003231 593 STITSK---------WF-------GEDE-KNVRALFTLAA-KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHW 654 (837)
Q Consensus 593 s~l~s~---------~~-------G~~e-~~l~~lf~~A~-~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~l 654 (837)
...... .+ +... .....+..... ...+.||+|||++.+...+.. .. ..+..++..+
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~--~~----~~l~~l~~~~ 168 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI--AA----EDLYTLLRVH 168 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS--CH----HHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc--ch----HHHHHHHHHH
Confidence 432111 00 1111 11222322222 235789999999998542110 11 2233333333
Q ss_pred ccccccCC--ceEEEEEecCCCC---CCc---HHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhc----CCChhhHHHHHH
Q 003231 655 DGLLTRNG--ERILVLAATNRPF---DLD---EAIIRRFERRIMVGLPSAENREMILKTLLAKE----KVEDLDFKELAA 722 (837)
Q Consensus 655 d~~~~~~~--~~vlVIaTTN~~~---~Ld---~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~----~~~d~dl~~LA~ 722 (837)
.... ..+ .++.+|++||.+. .++ +.+.+||...+.++.++.++..+++...+... .+++..+..++.
T Consensus 169 ~~~~-~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 169 EEIP-SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HHSC-CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred Hhcc-cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 3221 112 5688888887654 233 55556665558999999999999998776532 236677888999
Q ss_pred HcC------CCCHHHHHHHHHHHHHHHHH
Q 003231 723 MTE------GYSGSDLKNLCVTAAYRPVR 745 (837)
Q Consensus 723 ~t~------G~sg~DL~~L~~~Aa~~av~ 745 (837)
.+. |. ++.+..+|..|+..+..
T Consensus 248 ~~~~~~~~~G~-p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 248 VYGEDKGGDGS-ARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHCGGGTSCCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCc-HHHHHHHHHHHHHHHHH
Confidence 988 74 56788888777665543
No 111
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.18 E-value=3.6e-11 Score=154.14 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=110.3
Q ss_pred CCCCccccccccchHHHHHHHHHHHcccCC----------chhhcC------------------CCCCCCceEEEEcCCC
Q 003231 518 NEIGVTFADIGALNEIKESLQELVMLPLRR----------PDLFKG------------------GLLKPCRGILLFGPPG 569 (837)
Q Consensus 518 ~~~~v~fddIiG~d~vk~~L~~~i~~~l~~----------~e~~~~------------------~~~~p~~~iLL~GPpG 569 (837)
..+.++|++|+|++++|+.+.+.+.+++.+ ++.|+. ++....+.+|+|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 345689999999999999999999888733 555644 2333445599999999
Q ss_pred ChHHHHHHHHHHHh---CCcEEEEeccccc------------cccccc----cHHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 570 TGKTMLAKAIANEA---GASFINVSMSTIT------------SKWFGE----DEKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 570 tGKT~LAralA~el---g~~~i~v~~s~l~------------s~~~G~----~e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
||||+||+++|.+. |-+.+.|+..+.. ++|+++ .+..++.+|..|+...|++||+|+++.|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999877 6677777776644 567777 7999999999999999999999999999
Q ss_pred cCCCC---Ccc--hHHHHHHHHHHHHHhhccccccCCceEEEEEecCCC
Q 003231 631 LGQRT---RVG--EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRP 674 (837)
Q Consensus 631 ~~~r~---~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~ 674 (837)
++.+. ..+ ......+++++++..+++.....+ |+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~--v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT--CEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCC--eEEE-Eeccc
Confidence 98732 111 225666788999999998755444 6666 66763
No 112
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.13 E-value=3.3e-09 Score=141.61 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=66.3
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHH
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEK 605 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~ 605 (837)
+++-.+++.+++.+..+. ++ .|.+++||+|++||||++|+|..|...|+.++.+..+.-.+ ..+-..
T Consensus 1587 ~LVlF~dai~Hi~RI~Ri-l~----------~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~~f~e 1653 (2695)
T 4akg_A 1587 PMVIHESMVDHILRIDRA-LK----------QVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LSDFDM 1653 (2695)
T ss_dssp CCCCCHHHHHHHHHHHHH-HH----------SSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HHHHHH
T ss_pred eeeeHHHHHHHHHHHHHH-Hc----------CCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HHHHHH
Confidence 466677777777766654 22 46689999999999999999999999999999988654221 122345
Q ss_pred HHHHHHHHHH-hcCCeEEEecccc
Q 003231 606 NVRALFTLAA-KVSPTIIFVDEVD 628 (837)
Q Consensus 606 ~l~~lf~~A~-~~~psVLfIDEID 628 (837)
.++.++..|. +..+.+++++|.+
T Consensus 1654 DLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1654 ILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp HHHHHHHHHHHSCCCEEEEEETTT
T ss_pred HHHHHHHHcCCCCCceEEEEeccc
Confidence 5778888774 4567777787764
No 113
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.10 E-value=9.4e-11 Score=126.18 Aligned_cols=180 Identities=12% Similarity=0.087 Sum_probs=121.3
Q ss_pred ccccc-cccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCC-------eEE
Q 003231 67 KTTFD-EFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFES-------KLL 138 (837)
Q Consensus 67 ~vsf~-~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a-------~ll 138 (837)
.-.++ ++.+. +..|..|.+.+...........++-.-...+..|||+||++.++++||||+|++++. +++
T Consensus 26 ~~~l~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~ 103 (309)
T 3syl_A 26 LEELDRELIGL--KPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLV 103 (309)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEE
T ss_pred HHHHHHHccCh--HHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEE
Confidence 33355 56776 888888887776554333334444333455667999999999999999999999843 555
Q ss_pred EeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccc
Q 003231 139 LLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHR 218 (837)
Q Consensus 139 ~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (837)
.++..++...
T Consensus 104 ~~~~~~l~~~---------------------------------------------------------------------- 113 (309)
T 3syl_A 104 SVTRDDLVGQ---------------------------------------------------------------------- 113 (309)
T ss_dssp EECGGGTCCS----------------------------------------------------------------------
T ss_pred EEcHHHhhhh----------------------------------------------------------------------
Confidence 5554443211
Q ss_pred cCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhh------cHHHHHHHHH
Q 003231 219 RNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQ------SQRFYNLLDK 292 (837)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~------~~~~~~~lk~ 292 (837)
|.+...-. +.+++... .+.||||||+|.++.. ..+..+.|..
T Consensus 114 --------------------------~~g~~~~~---~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~ 161 (309)
T 3syl_A 114 --------------------------YIGHTAPK---TKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQ 161 (309)
T ss_dssp --------------------------STTCHHHH---HHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHH
T ss_pred --------------------------cccccHHH---HHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHH
Confidence 11111111 22223232 5789999999996532 3457777778
Q ss_pred HHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHH
Q 003231 293 LLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEE 350 (837)
Q Consensus 293 ~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~ 350 (837)
.++....++++|+++.....+....++++|.+||+..|.+++|+.+++..||+.++.+
T Consensus 162 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 162 VMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp HHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8888777889888755443333344678999999889999999999999999987653
No 114
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.08 E-value=2e-09 Score=115.28 Aligned_cols=190 Identities=15% Similarity=0.225 Sum_probs=125.7
Q ss_pred CCChHHHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHH
Q 003231 46 GVSGEQIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQML 125 (837)
Q Consensus 46 ~~~~~~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~L 125 (837)
..++++++..|...|+ +. ++.+..|..++..|++...+..-.+ -...++.|||+||++.++++|
T Consensus 3 ~~~~~~l~~~l~~~i~-------------G~--~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 3 EMTPREIVSELDQHII-------------GQ--ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCHHHHHHHHHTTCC-------------SC--HHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTTSSHHHH
T ss_pred cCCHHHHHHHHhhhcC-------------Ch--HHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCCCCHHHH
Confidence 4566777777665544 22 7788888888887776655522211 123567899999999999999
Q ss_pred HHHHhhhhCCeEEEeeccccchhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCcccccc
Q 003231 126 AKALAHFFESKLLLLDVNDFSLKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKS 205 (837)
Q Consensus 126 akALA~~~~a~ll~ld~~~~~~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (837)
||++|+.++.+++.++..++... |- .|.
T Consensus 67 a~~la~~l~~~~~~i~~~~~~~~-----~~----------------------~~~------------------------- 94 (310)
T 1ofh_A 67 ARRLAKLANAPFIKVEATKFTEV-----GY----------------------VGK------------------------- 94 (310)
T ss_dssp HHHHHHHHTCCEEEEEGGGGSSC-----CS----------------------GGG-------------------------
T ss_pred HHHHHHHhCCCEEEEcchhcccC-----Cc----------------------cCc-------------------------
Confidence 99999999999999998877420 00 000
Q ss_pred ccccCCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHH-Hhhc-CCcEEEEEccchhHhhhc
Q 003231 206 RCMEGSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLV-SITE-TSSVILYLRDVDKLLFQS 283 (837)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~-~~~~-~~p~Ilfi~di~~~l~~~ 283 (837)
+..-.+..+++-.. .+.. ..+.||||||+|.+....
T Consensus 95 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~ 132 (310)
T 1ofh_A 95 ------------------------------------------EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG 132 (310)
T ss_dssp ------------------------------------------STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS
T ss_pred ------------------------------------------cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc
Confidence 00001222222110 0000 247899999999955332
Q ss_pred ----H-----HHHHHHHHHHHhc----------cCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHH
Q 003231 284 ----Q-----RFYNLLDKLLKKL----------SGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNW 344 (837)
Q Consensus 284 ----~-----~~~~~lk~~l~~l----------~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Il 344 (837)
. ...+.|.+.|+.. ..++++|+++..+ ++....++++|.+||+..|.+++|+.+++..||
T Consensus 133 ~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il 211 (310)
T 1ofh_A 133 EYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ-VARPSDLIPELQGRLPIRVELTALSAADFERIL 211 (310)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCS-SSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcc-cCCcccCCHHHHhhCCceEEcCCcCHHHHHHHH
Confidence 1 1245555666642 2367888876443 445678999999999988999999999999999
Q ss_pred HH
Q 003231 345 KA 346 (837)
Q Consensus 345 k~ 346 (837)
+.
T Consensus 212 ~~ 213 (310)
T 1ofh_A 212 TE 213 (310)
T ss_dssp HS
T ss_pred Hh
Confidence 94
No 115
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.01 E-value=3.5e-10 Score=111.32 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=60.0
Q ss_pred CCcEEEEEccchhHhhhc-----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHH
Q 003231 266 TSSVILYLRDVDKLLFQS-----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETH 340 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~-----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~r 340 (837)
.+|.||||||+|.+.... .++.+.|+.+++. +++.+|++++.........+|.+|.+||. .|.+.+|+.+++
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~ 190 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDT 190 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHH
Confidence 469999999999965332 3467788888876 78888888665544444578999999997 899999999999
Q ss_pred HHHHH
Q 003231 341 LVNWK 345 (837)
Q Consensus 341 l~Ilk 345 (837)
.+||+
T Consensus 191 ~~il~ 195 (195)
T 1jbk_A 191 IAILR 195 (195)
T ss_dssp HTTCC
T ss_pred HHHhC
Confidence 88763
No 116
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.01 E-value=5.3e-10 Score=98.82 Aligned_cols=86 Identities=16% Similarity=0.309 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhh
Q 003231 695 SAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDASE 773 (837)
Q Consensus 695 ~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (837)
+.++|.+||+.++++.++ ++++++.||..|+||||+||.++|++|++.|+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 567899999999999888 78999999999999999999999999999999862
Q ss_pred hHHHHHHhhhhccCCCCHHHHHHHHHHhhhcccccccchhhhHHHH
Q 003231 774 TKEEAKEERVITLRPLNMEDMRQAKNQVAASFASEGSVMNELKQWN 819 (837)
Q Consensus 774 ~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~~~~~~~~~~~~W~ 819 (837)
..+|+++||..|++++.++..+.. ....+..||
T Consensus 56 ------------~~~i~~~df~~Al~~v~~~~~~~~-~~~~y~~w~ 88 (88)
T 3vlf_B 56 ------------RKVATEKDFLKAVDKVISGYKKFS-STSRYMQYN 88 (88)
T ss_dssp ------------CSSBCHHHHHHHHHHHTC----------------
T ss_pred ------------cccCCHHHHHHHHHHHhcCccccc-chhHHhccC
Confidence 136999999999999999887653 234444775
No 117
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.00 E-value=4.7e-10 Score=98.74 Aligned_cols=76 Identities=26% Similarity=0.395 Sum_probs=68.7
Q ss_pred cCCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhccc
Q 003231 691 VGLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSE 769 (837)
Q Consensus 691 ~~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~ 769 (837)
-.+|+.++|.+||+.++++..+ .+++++.||..|+||||+||.++|++|++.|+++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~---------------------- 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER---------------------- 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc----------------------
Confidence 4679999999999999998877 78999999999999999999999999999998852
Q ss_pred chhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhhc
Q 003231 770 DASETKEEAKEERVITLRPLNMEDMRQAKNQVAAS 804 (837)
Q Consensus 770 ~~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps 804 (837)
..+|+++||..|++++.|.
T Consensus 66 ----------------~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ----------------RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ----------------CSEECHHHHHHHHHHHHCC
T ss_pred ----------------CCCCCHHHHHHHHHHHccC
Confidence 2579999999999999874
No 118
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.99 E-value=8.4e-10 Score=95.13 Aligned_cols=74 Identities=27% Similarity=0.403 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccc
Q 003231 692 GLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSED 770 (837)
Q Consensus 692 ~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~ 770 (837)
|+|+.++|.+||+.++++..+ .++++..||..|+||||+||.++|++|++.|+++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~----------------------- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER----------------------- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------------
Confidence 689999999999999999887 78999999999999999999999999999998751
Q ss_pred hhhhHHHHHHhhhhccCCCCHHHHHHHHHHhhh
Q 003231 771 ASETKEEAKEERVITLRPLNMEDMRQAKNQVAA 803 (837)
Q Consensus 771 ~~~~~~e~~~~~~~~~~~lt~eDf~~Al~~v~p 803 (837)
..+|+++||..|++++..
T Consensus 58 ---------------~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 58 ---------------RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp ---------------CSEECHHHHHHHHHHHHC
T ss_pred ---------------CCCCCHHHHHHHHHHHHh
Confidence 247999999999998864
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.94 E-value=1.4e-09 Score=107.92 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=61.4
Q ss_pred Ccccccccc----chHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 003231 521 GVTFADIGA----LNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSM 592 (837)
Q Consensus 521 ~v~fddIiG----~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~ 592 (837)
..+|+++++ +..+++.+.+++.. ....+..+++|+||||||||+|+++++..+ |..++.+++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 348888876 34445555555543 112345789999999999999999999887 667777887
Q ss_pred cccccccccccHHH-HHHHHHHHHhcCCeEEEecccccc
Q 003231 593 STITSKWFGEDEKN-VRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 593 s~l~s~~~G~~e~~-l~~lf~~A~~~~psVLfIDEID~L 630 (837)
.++...+....... ...++.. -..|.+|+|||++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 76 KDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 76654322110000 0011222 225789999999854
No 120
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.94 E-value=2.7e-09 Score=142.54 Aligned_cols=142 Identities=23% Similarity=0.391 Sum_probs=96.2
Q ss_pred CCceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEeccccccccccccHHHHHHHHHHHH---------------hcCCeE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAI-ANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAA---------------KVSPTI 621 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAral-A~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~---------------~~~psV 621 (837)
..+++||+||||||||++|+.+ +...+..++.++++...+. ..+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 3579999999999999999554 4444788888888765432 23334444321 112469
Q ss_pred EEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccC-C-----ceEEEEEecCCC-----CCCcHHHHHHHHHhhh
Q 003231 622 IFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRN-G-----ERILVLAATNRP-----FDLDEAIIRRFERRIM 690 (837)
Q Consensus 622 LfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~-~-----~~vlVIaTTN~~-----~~Ld~aL~rRF~~~I~ 690 (837)
|||||++.....+.+ .+. ...++.+++. ..+..... . .++.+|||||++ ..++++++||| .++.
T Consensus 1340 lFiDEinmp~~d~yg--~q~-~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~ 1414 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYG--SQN-VVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILY 1414 (2695)
T ss_dssp EEEETTTCSCCCSSS--CCH-HHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEE
T ss_pred EEecccccccccccC--chh-HHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEE
Confidence 999999965443322 221 2233344432 12222111 1 358999999999 48999999999 8899
Q ss_pred cCCCCHHHHHHHHHHHHhhc
Q 003231 691 VGLPSAENREMILKTLLAKE 710 (837)
Q Consensus 691 ~~~P~~eer~~IL~~~l~~~ 710 (837)
++.|+.+++..|+..++...
T Consensus 1415 i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999888653
No 121
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.89 E-value=2.8e-08 Score=109.51 Aligned_cols=134 Identities=11% Similarity=0.112 Sum_probs=88.1
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccc------cCCCCCCchhHHHHccCCceeeeCCCChHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRML------EPEDDCRDVDERLTILFPYNLEVKLPEDETHL 341 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~------~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl 341 (837)
|.||||||+|.+- .+..+.|...++....+++++++..- ..++....++++|.+||. .|.+++|+.+++.
T Consensus 190 ~~vl~IDEi~~l~---~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~-~i~~~~~~~~e~~ 265 (368)
T 3uk6_A 190 PGVLFIDEVHMLD---IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL-IVSTTPYSEKDTK 265 (368)
T ss_dssp BCEEEEESGGGSB---HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE-EEEECCCCHHHHH
T ss_pred CceEEEhhccccC---hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc-EEEecCCCHHHHH
Confidence 7899999999942 45566677777876667777765310 012345778999999997 6999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeec
Q 003231 342 VNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVIS 421 (837)
Q Consensus 342 ~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~ 421 (837)
.||+..+.+. ...-..+ ....|...+.+ -...++..+++.|+.++..+.. -.|+
T Consensus 266 ~il~~~~~~~----~~~~~~~-----------~l~~l~~~~~~---G~~r~~~~ll~~a~~~A~~~~~--------~~It 319 (368)
T 3uk6_A 266 QILRIRCEEE----DVEMSED-----------AYTVLTRIGLE---TSLRYAIQLITAASLVCRKRKG--------TEVQ 319 (368)
T ss_dssp HHHHHHHHHT----TCCBCHH-----------HHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHTTC--------SSBC
T ss_pred HHHHHHHHHc----CCCCCHH-----------HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCC--------CCCC
Confidence 9999765421 0111111 12233334431 2445666677777766654332 2489
Q ss_pred HHhHHHHHHH
Q 003231 422 SKSLSHGLSI 431 (837)
Q Consensus 422 ~~~~~~~l~~ 431 (837)
.++++.++..
T Consensus 320 ~~~v~~a~~~ 329 (368)
T 3uk6_A 320 VDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999985
No 122
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.88 E-value=5.3e-09 Score=115.79 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=64.9
Q ss_pred CChHHHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHH
Q 003231 47 VSGEQIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLA 126 (837)
Q Consensus 47 ~~~~~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~La 126 (837)
.+++++++.|...|+ + .+..+..|..++..|.+..............++.|||+||+++++++||
T Consensus 4 ~~~~~l~~~l~~~i~-------------G--~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 4 PTPHEIRNHLDDYVI-------------G--QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCHHHHHHHHHHHCC-------------S--CHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHHhhcc-------------C--HHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHH
Confidence 455666666655432 2 2778888988888887665443333445567889999999999999999
Q ss_pred HHHhhhhCCeEEEeeccccc
Q 003231 127 KALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 127 kALA~~~~a~ll~ld~~~~~ 146 (837)
||||+.++.+++.++.+++.
T Consensus 69 ~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 69 ETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHcCCCEEEechHHhc
Confidence 99999999999999987664
No 123
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.84 E-value=7e-08 Score=105.21 Aligned_cols=209 Identities=13% Similarity=0.144 Sum_probs=133.5
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchh
Q 003231 69 TFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLK 148 (837)
Q Consensus 69 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~ 148 (837)
+|++|-+. +..+..|..++-...+.. ...+.|||+||+++++++||+++|+..+.++..++...+..
T Consensus 27 ~~~~iiG~--~~~~~~l~~~l~~~~~~~----------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~- 93 (338)
T 3pfi_A 27 NFDGYIGQ--ESIKKNLNVFIAAAKKRN----------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK- 93 (338)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHHHHHTT----------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS-
T ss_pred CHHHhCCh--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc-
Confidence 59999886 888877777665443211 24556999999999999999999999999988776544310
Q ss_pred hhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccccc
Q 003231 149 MQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSIS 228 (837)
Q Consensus 149 ~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (837)
T Consensus 94 -------------------------------------------------------------------------------- 93 (338)
T 3pfi_A 94 -------------------------------------------------------------------------------- 93 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHHHHHHHHHHHHhccC---------
Q 003231 229 SLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSG--------- 299 (837)
Q Consensus 229 ~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g--------- 299 (837)
...+..++.. ...+.||||||||.+- .+..+.|...++....
T Consensus 94 ------------------------~~~~~~~~~~--~~~~~vl~lDEi~~l~---~~~~~~Ll~~l~~~~~~~~~~~~~~ 144 (338)
T 3pfi_A 94 ------------------------SGDLAAILTN--LSEGDILFIDEIHRLS---PAIEEVLYPAMEDYRLDIIIGSGPA 144 (338)
T ss_dssp ------------------------HHHHHHHHHT--CCTTCEEEEETGGGCC---HHHHHHHHHHHHTSCC---------
T ss_pred ------------------------hhHHHHHHHh--ccCCCEEEEechhhcC---HHHHHHHHHHHHhccchhhcccCcc
Confidence 0001112222 2468999999999953 2333344445554210
Q ss_pred ---------CEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhc
Q 003231 300 ---------SVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAA 370 (837)
Q Consensus 300 ---------~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~ 370 (837)
++++||+ +|+...++++|.+||...|.+++|+.+++..+++..+.+.. .....+
T Consensus 145 ~~~~~~~~~~~~~i~a-----tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~-------- 207 (338)
T 3pfi_A 145 AQTIKIDLPKFTLIGA-----TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEK-------- 207 (338)
T ss_dssp CCCCCCCCCCCEEEEE-----ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHH--------
T ss_pred ccceecCCCCeEEEEe-----CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHH--------
Confidence 2678887 45556689999999988999999999999999997543211 111111
Q ss_pred CCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHH
Q 003231 371 NDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSI 431 (837)
Q Consensus 371 ~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~ 431 (837)
....|...+.. ...++..+++.+..++..... -.|+.+++..++..
T Consensus 208 ---~~~~l~~~~~G----~~r~l~~~l~~~~~~a~~~~~--------~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 208 ---AALEIAKRSRS----TPRIALRLLKRVRDFADVNDE--------EIITEKRANEALNS 253 (338)
T ss_dssp ---HHHHHHHTTTT----CHHHHHHHHHHHHHHHHHTTC--------SEECHHHHHHHHHH
T ss_pred ---HHHHHHHHHCc----CHHHHHHHHHHHHHHHHhhcC--------CccCHHHHHHHHHH
Confidence 12223333322 224566666666655543222 23788888888873
No 124
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.84 E-value=2.7e-09 Score=92.99 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhh
Q 003231 695 SAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDASE 773 (837)
Q Consensus 695 ~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (837)
+.++|.+||+.++++.++ +++++..||..|+||||+||.++|++|++.|+++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--------------------------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 678999999999999887 78999999999999999999999999999887641
Q ss_pred hHHHHHHhhhhccCCCCHHHHHHHHHHhhhccc
Q 003231 774 TKEEAKEERVITLRPLNMEDMRQAKNQVAASFA 806 (837)
Q Consensus 774 ~~~e~~~~~~~~~~~lt~eDf~~Al~~v~ps~~ 806 (837)
..+|+++||..|+++++|+..
T Consensus 56 ------------~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 ------------RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp ------------CSSBCHHHHHHHHHHHCC---
T ss_pred ------------cCCcCHHHHHHHHHHHccCch
Confidence 257999999999999999986
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.82 E-value=2.4e-08 Score=108.37 Aligned_cols=156 Identities=14% Similarity=0.160 Sum_probs=110.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchh
Q 003231 69 TFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLK 148 (837)
Q Consensus 69 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~ 148 (837)
+|++|-+. ++.+..|..++- . ...++.+|++||+++++++||+|+|++.+.+++-++.+++...
T Consensus 24 ~~~~ivg~--~~~~~~l~~~l~----~----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~ 87 (324)
T 3u61_B 24 TIDECILP--AFDKETFKSITS----K----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKID 87 (324)
T ss_dssp STTTSCCC--HHHHHHHHHHHH----T----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHH
T ss_pred CHHHHhCc--HHHHHHHHHHHH----c----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHH
Confidence 59999886 888877776654 1 1233567888999999999999999999999888886553210
Q ss_pred hhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccccc
Q 003231 149 MQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSIS 228 (837)
Q Consensus 149 ~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (837)
.
T Consensus 88 ---------------------~---------------------------------------------------------- 88 (324)
T 3u61_B 88 ---------------------F---------------------------------------------------------- 88 (324)
T ss_dssp ---------------------H----------------------------------------------------------
T ss_pred ---------------------H----------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhh-cCCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecc
Q 003231 229 SLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSIT-ETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSR 307 (837)
Q Consensus 229 ~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~-~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~ 307 (837)
+-+.+.+++.... ...+.||||||+|.+- + .+..+.|...++..++++.+|++
T Consensus 89 -----------------------i~~~~~~~~~~~~~~~~~~vliiDEi~~l~-~-~~~~~~L~~~le~~~~~~~iI~~- 142 (324)
T 3u61_B 89 -----------------------VRGPLTNFASAASFDGRQKVIVIDEFDRSG-L-AESQRHLRSFMEAYSSNCSIIIT- 142 (324)
T ss_dssp -----------------------HHTHHHHHHHBCCCSSCEEEEEEESCCCGG-G-HHHHHHHHHHHHHHGGGCEEEEE-
T ss_pred -----------------------HHHHHHHHHhhcccCCCCeEEEEECCcccC-c-HHHHHHHHHHHHhCCCCcEEEEE-
Confidence 0001111111111 1167999999999953 1 33455566777777778887776
Q ss_pred cccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHH
Q 003231 308 MLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEE 350 (837)
Q Consensus 308 ~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~ 350 (837)
+|....++++|.+||. .|++++|+.+++..|++..+..
T Consensus 143 ----~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 143 ----ANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp ----ESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred ----eCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 4555678999999996 8999999999999999876543
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.81 E-value=8.1e-09 Score=101.35 Aligned_cols=68 Identities=16% Similarity=0.357 Sum_probs=53.1
Q ss_pred CCcEEEEEccchhHhh-----h-cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCC
Q 003231 266 TSSVILYLRDVDKLLF-----Q-SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPE 336 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~-----~-~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~ 336 (837)
.+|.||||||+|.+.. . ..++.+.|+..+++ +++++|++++..+......+|.+|.+||. .|.|.+|+
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 3789999999999651 1 25678888888886 78889998665544334568999999998 79999996
No 127
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.79 E-value=6.9e-09 Score=117.58 Aligned_cols=179 Identities=13% Similarity=0.194 Sum_probs=83.5
Q ss_pred CCChHHHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHH
Q 003231 46 GVSGEQIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQML 125 (837)
Q Consensus 46 ~~~~~~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~L 125 (837)
..|+.++.+.|.+.|+-- ++.|..|..|++-|.++..+....+ ....+++|||+||+++++++|
T Consensus 3 ~~tP~~i~~~Ld~~IvGq---------------e~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQ---------------ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCHHHHHHHHHTTCCSC---------------HHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTTSSHHHH
T ss_pred CCCHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCCCCHHHH
Confidence 467777877777666542 8899999999999988876643221 223567899999999999999
Q ss_pred HHHHhhhhCCeEEEeeccccch-hhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccc
Q 003231 126 AKALAHFFESKLLLLDVNDFSL-KMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLK 204 (837)
Q Consensus 126 akALA~~~~a~ll~ld~~~~~~-~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (837)
|||||+.++++++.+|.+.+.. +| +|.
T Consensus 67 ar~lA~~l~~~~~~v~~~~~~~~g~---vG~------------------------------------------------- 94 (444)
T 1g41_A 67 ARRLAKLANAPFIKVEATKFTEVGY---VGK------------------------------------------------- 94 (444)
T ss_dssp HHHHHHHTTCCEEEEEGGGGC-------CCC-------------------------------------------------
T ss_pred HHHHHHHcCCCceeecchhhcccce---eec-------------------------------------------------
Confidence 9999999999999999887753 11 111
Q ss_pred cccccCCCCCcccccCCCCcccccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhc-
Q 003231 205 SRCMEGSSFLPKHRRNASDMSSISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQS- 283 (837)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~- 283 (837)
+..-.+..+|+.+... +++||++......
T Consensus 95 -------------------------------------------d~e~~lr~lf~~a~~~-------~~~De~d~~~~~~~ 124 (444)
T 1g41_A 95 -------------------------------------------EVDSIIRDLTDSAMKL-------VRQQEIAKNRARAE 124 (444)
T ss_dssp -------------------------------------------CTHHHHHHHHHHHHHH-------HHHHHHHSCC----
T ss_pred -------------------------------------------cHHHHHHHHHHHHHhc-------chhhhhhhhhccch
Confidence 1223556677766664 2478887743222
Q ss_pred ----HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHc--cCCceeeeCCCChH-HHHHHHHH
Q 003231 284 ----QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTI--LFPYNLEVKLPEDE-THLVNWKA 346 (837)
Q Consensus 284 ----~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~r--rF~~~IeI~~P~~e-~rl~Ilk~ 346 (837)
.+..+.|.+.++.+.+.-.++ + .++|++..+|+||.| ||..+|+|++|+.. .|+.|+.+
T Consensus 125 ~~~e~rvl~~LL~~~dg~~~~~~v~-a---~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 125 DVAEERILDALLPPAKNQWGEVENH-D---SHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHhhccccccccc-c---ccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 234444444444443433332 2 128899999999997 99999999999998 88888864
No 128
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.78 E-value=2.2e-08 Score=112.13 Aligned_cols=188 Identities=19% Similarity=0.244 Sum_probs=112.5
Q ss_pred ccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----
Q 003231 526 DIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK---- 598 (837)
Q Consensus 526 dIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~---- 598 (837)
.++|.....+.+.+.+.. +. ....++||+|++||||+++|+++.... +.+|+.++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~-~a----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~ 206 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKK-IS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 206 (387)
T ss_dssp CCCCCSHHHHHHHHHHHH-HT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred hhhhccHHhhHHHHHHHH-hc----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHH
Confidence 467776666666666654 11 234568999999999999999999876 479999999886442
Q ss_pred -cccccHH-------HHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-------cCCc
Q 003231 599 -WFGEDEK-------NVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-------RNGE 663 (837)
Q Consensus 599 -~~G~~e~-------~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~ 663 (837)
.+|...+ .....|+.|.. ++||||||+.|.. .+...|+..++.... ....
T Consensus 207 elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSL------------EAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCH------------HHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCH------------HHHHHHHHHHhcCcEEeCCCCceeec
Confidence 2332111 01234454443 8999999999843 333344444432111 1112
Q ss_pred eEEEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCH----HHHHHHHHHHHhhc----CC-----ChhhHHHHHHH
Q 003231 664 RILVLAATNRP-------FDLDEAIIRRFERRIMVGLPSA----ENREMILKTLLAKE----KV-----EDLDFKELAAM 723 (837)
Q Consensus 664 ~vlVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~----eer~~IL~~~l~~~----~~-----~d~dl~~LA~~ 723 (837)
++.||+|||.. ..+.+.+..|+ ..+.+..|.. ++...++++++... +. ++..++.|...
T Consensus 272 ~~rii~at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~ 350 (387)
T 1ny5_A 272 NVRILAATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 350 (387)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred cEEEEEeCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 57899999973 45677777787 4445555654 44455555555432 21 33333333332
Q ss_pred cCCCC--HHHHHHHHHHHHHH
Q 003231 724 TEGYS--GSDLKNLCVTAAYR 742 (837)
Q Consensus 724 t~G~s--g~DL~~L~~~Aa~~ 742 (837)
.|. -++|++++..|+..
T Consensus 351 --~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 351 --PWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp --CCTTHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHh
Confidence 233 35777777766653
No 129
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.77 E-value=6.4e-08 Score=124.43 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=61.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----------------ccccccHHHHHHHHHHHH
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITS----------------KWFGEDEKNVRALFTLAA 615 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s----------------~~~G~~e~~l~~lf~~A~ 615 (837)
++...+.++++||+|+|||+||-.++.+. |-....++...-.. .+....+..+..+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 34456779999999999999998886544 77777777753221 133445777888888888
Q ss_pred hcCCeEEEecccccccCCCC
Q 003231 616 KVSPTIIFVDEVDSMLGQRT 635 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~~r~ 635 (837)
..++++|+||.+..|.+...
T Consensus 1507 s~~~~~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAE 1526 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTT
T ss_pred cCCCCEEEEccHHhCCcccc
Confidence 99999999999999987643
No 130
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=2.1e-08 Score=97.20 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=67.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r 634 (837)
+...++|+||+|+|||+|+++++..+ |...+.++..++... +....+.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 45679999999999999999999988 777888888876543 11235789999999876431
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecC-CCCCCc--HHHHHHHHHhhhcC
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATN-RPFDLD--EAIIRRFERRIMVG 692 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN-~~~~Ld--~aL~rRF~~~I~~~ 692 (837)
.. ..+...++..... +..++|| ||| .|..+. +.+++||..-+.+.
T Consensus 99 ----~~-------~~l~~li~~~~~~-g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 99 ----EQ-------ALLFSIFNRFRNS-GKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp ----HH-------HHHHHHHHHHHHH-TCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred ----HH-------HHHHHHHHHHHHc-CCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEE
Confidence 11 2222222222221 1222444 555 454333 89999996555443
No 131
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.75 E-value=1.2e-08 Score=119.22 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=82.5
Q ss_pred cCCcEEEEEccchhHhhhcH-HHHHHHHHHHHhcc---------------CCEEEEecccccCCCCCCchhHHHHccCCc
Q 003231 265 ETSSVILYLRDVDKLLFQSQ-RFYNLLDKLLKKLS---------------GSVLVLGSRMLEPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 265 ~~~p~Ilfi~di~~~l~~~~-~~~~~lk~~l~~l~---------------g~v~iiGs~~~~~~~~~~~~d~al~rrF~~ 328 (837)
..+| ||||||||++....+ +..+.|-..|+... .++++|++ +|....+|++|.+||.
T Consensus 174 ~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t-----tN~~~~l~~aL~~R~~- 246 (543)
T 3m6a_A 174 KLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT-----ANNLATIPGPLRDRME- 246 (543)
T ss_dssp SSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE-----CSSTTTSCHHHHHHEE-
T ss_pred ccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec-----cCccccCCHHHHhhcc-
Confidence 3456 999999999554321 22233333332111 46788876 6777889999999996
Q ss_pred eeeeCCCChHHHHHHHHHHHHHHH-HHhhcccchhHHHHHhhcCCCChhHHhhc---ccCC--CCCChhhHHHHHHHHHH
Q 003231 329 NLEVKLPEDETHLVNWKAKLEEDM-KVLQFQDNKNHIAEVLAANDLECDDLGSI---CQAD--TMVLSNYIEEIVVSAIS 402 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l~~d~-~~~~~~~n~~~i~~vl~~~~~~~~dL~~~---~~~d--~~l~~~~Ie~iv~~a~~ 402 (837)
.|.+++|+.+++..||+.++.+.. +.+..... .+ .++-..+..+ |-.+ ..-....|+.++..|..
T Consensus 247 vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~--~i-------~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~ 317 (543)
T 3m6a_A 247 IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKS--NL-------QLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAK 317 (543)
T ss_dssp EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGG--GC-------EECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcc--cc-------cCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHH
Confidence 899999999999999999874322 11111100 00 0111122221 1110 00011567777776666
Q ss_pred hhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 403 HHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 403 ~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
..+... .+.+.|+.++|+..+.
T Consensus 318 ~~~~~~------~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 318 AIVAEE------RKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHTTC------CSCCEECTTTTHHHHC
T ss_pred HHHhcC------CcceecCHHHHHHHhC
Confidence 555432 3456799999999887
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.73 E-value=1.3e-08 Score=102.73 Aligned_cols=113 Identities=20% Similarity=0.280 Sum_probs=68.7
Q ss_pred HHhhCCCccCCCCCCccccccccchH----HHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 507 EKRIRPEVIPANEIGVTFADIGALNE----IKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 507 ~~~l~~~~i~~~~~~v~fddIiG~d~----vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...++...+++.....+|+++++.+. +++.+..++... +. ..++.+++|+||||||||++|++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 7 ESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEY---EP------GKKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHEEEESSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHC---CS------SCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHh---hh------ccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444444454434568999887653 334444444321 10 012378999999999999999999998
Q ss_pred h---CCcEEEEecccccccccccc-HHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 583 A---GASFINVSMSTITSKWFGED-EKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 583 l---g~~~i~v~~s~l~s~~~G~~-e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
+ +.+++.++++++........ ...+..++..... +.+|||||++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 78 LAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 8 77888888877654322110 0011223333332 469999999765
No 133
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.71 E-value=3.9e-08 Score=109.20 Aligned_cols=85 Identities=20% Similarity=0.353 Sum_probs=63.5
Q ss_pred CChHHHHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccc---------------cccccCCCCCc
Q 003231 47 VSGEQIEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISK---------------HTRNLSPASRT 111 (837)
Q Consensus 47 ~~~~~~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~---------------~~~~l~~~~~~ 111 (837)
.+..++++.|...|+ +. ++.|..|..+++.|++...... --.......+.
T Consensus 10 ~~~~~l~~~L~~~vi-------------Gq--~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ 74 (376)
T 1um8_A 10 PAPKELKAVLDNYVI-------------GQ--EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSN 74 (376)
T ss_dssp CCHHHHHHHHHTTCC-------------SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHhhHcc-------------Cc--HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCC
Confidence 345566666665544 33 8899999999988877654211 00124456778
Q ss_pred eEeecChhHHHHHHHHHHhhhhCCeEEEeeccccc
Q 003231 112 ILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 112 ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~ 146 (837)
|||+||+++++++|||+||+.++.++..+|...+.
T Consensus 75 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 109 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLT 109 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhh
Confidence 99999999999999999999999999999887764
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.68 E-value=8.3e-07 Score=89.03 Aligned_cols=75 Identities=16% Similarity=0.071 Sum_probs=58.0
Q ss_pred CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 266 TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
..+.||||||+|.+-. +..+.|...++....++.+|.+ ++....+++++.+||. .|++.+|+.++...+++
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~l~~~l~~~~~~~~~i~~-----~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~ 171 (226)
T 2chg_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILS-----CNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLL 171 (226)
T ss_dssp CSCEEEEEETGGGSCH---HHHHHHHHHHHHTTTTEEEEEE-----ESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHH
T ss_pred cCceEEEEeChhhcCH---HHHHHHHHHHHhcCCCCeEEEE-----eCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHH
Confidence 5789999999999533 3344566667776677777765 3445678899999997 99999999999999998
Q ss_pred HHHH
Q 003231 346 AKLE 349 (837)
Q Consensus 346 ~~l~ 349 (837)
..+.
T Consensus 172 ~~~~ 175 (226)
T 2chg_A 172 EICE 175 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 135
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.67 E-value=1.1e-07 Score=103.29 Aligned_cols=185 Identities=18% Similarity=0.168 Sum_probs=111.9
Q ss_pred cccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-----c
Q 003231 523 TFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT-----S 597 (837)
Q Consensus 523 ~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~-----s 597 (837)
..+.++|.++..+.|.+ +. . ..++|+||+|+|||+|++.+++.++..++.+++.... +
T Consensus 11 ~~~~~~gR~~el~~L~~-l~--------------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR--------------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC--------------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hc--------------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34568999988888876 42 1 4799999999999999999999988778888876430 0
Q ss_pred --cc-------c-------------------------c-c------cHHHHHHHHHHHHhc--CCeEEEecccccccCCC
Q 003231 598 --KW-------F-------------------------G-E------DEKNVRALFTLAAKV--SPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 598 --~~-------~-------------------------G-~------~e~~l~~lf~~A~~~--~psVLfIDEID~L~~~r 634 (837)
.. + + . ....+..++...... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 00 0 0 0 011234455444432 38899999999885421
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCc---------HHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLD---------EAIIRRFERRIMVGLPSAENREMILKT 705 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld---------~aL~rRF~~~I~~~~P~~eer~~IL~~ 705 (837)
.. ... ..+..+ ++.. .++.+|+|++....+. ..+..|+...+.++..+.++..+++..
T Consensus 154 ~~-~~~----~~l~~~---~~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~ 220 (357)
T 2fna_A 154 GV-NLL----PALAYA---YDNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRR 220 (357)
T ss_dssp TC-CCH----HHHHHH---HHHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHH
T ss_pred ch-hHH----HHHHHH---HHcC-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHH
Confidence 11 111 111222 2211 1355666655421111 112223335678899999999999988
Q ss_pred HHhhcCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 706 LLAKEKVEDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 706 ~l~~~~~~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
.+...+....+...+...+.|+.. -+..++..
T Consensus 221 ~~~~~~~~~~~~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 221 GFQEADIDFKDYEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHTCCCCCHHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHcCCCCCcHHHHHHHhCCCHH-HHHHHHHH
Confidence 776544422234888899998654 56666544
No 136
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.65 E-value=3.9e-08 Score=111.20 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=82.9
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEec--c---ccccccc
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAI-ANEAGASFINVSM--S---TITSKWF 600 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAral-A~elg~~~i~v~~--s---~l~s~~~ 600 (837)
|.|++.+|..|.-++...... .+..-++||.|+||| ||++|+++ +..+.... .... + .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEE
Confidence 799999988887766543211 122347999999999 99999999 66553322 2211 1 1111100
Q ss_pred cccH-HHHHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccc-----cCCceEEEEEecCCC
Q 003231 601 GEDE-KNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLT-----RNGERILVLAATNRP 674 (837)
Q Consensus 601 G~~e-~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~-----~~~~~vlVIaTTN~~ 674 (837)
+.+. ..-...+..|. .+|+|||||+.+-+ .....|+..|+.... .-+.++.||||+|+.
T Consensus 285 ~~tG~~~~~G~l~LAd---gGvl~lDEIn~~~~------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 285 EDRGWALRAGAAVLAD---GGILAVDHLEGAPE------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp ESSSEEEEECHHHHTT---TSEEEEECCTTCCH------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred cCCCcccCCCeeEEcC---CCeeehHhhhhCCH------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 0000 00011222332 38999999998732 233334433332110 223568999999986
Q ss_pred C-----------CCcHHHHHHHHHhh-hcCCCCHHH
Q 003231 675 F-----------DLDEAIIRRFERRI-MVGLPSAEN 698 (837)
Q Consensus 675 ~-----------~Ld~aL~rRF~~~I-~~~~P~~ee 698 (837)
. .|++++++|||..+ .++.|+.+.
T Consensus 350 ~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred cccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 4 78999999997644 456666544
No 137
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.64 E-value=9.3e-08 Score=106.31 Aligned_cols=187 Identities=21% Similarity=0.304 Sum_probs=109.2
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEeccccccc-----c
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGAS--FINVSMSTITSK-----W 599 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~--~i~v~~s~l~s~-----~ 599 (837)
++|.......+.+.+.... .....+|++|++||||+.+|+++....+.. |+.++|..+... .
T Consensus 131 ~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~l 199 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESEL 199 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHH
T ss_pred ccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHh
Confidence 6777777666666554311 223469999999999999999999887543 999999976443 2
Q ss_pred ccccHHH-------HHHHHHHHHhcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc-------CCceE
Q 003231 600 FGEDEKN-------VRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR-------NGERI 665 (837)
Q Consensus 600 ~G~~e~~-------l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~-------~~~~v 665 (837)
+|...+. ....|+.|. .++||||||+.|.. .+...|+..++..... ..-.+
T Consensus 200 fg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 200 FGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQ------------RVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCH------------HHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred cCccccccCCcccccCChHhhcC---CCeEEecChhhCCH------------HHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 2221110 112455443 37999999999843 3344445444432111 11246
Q ss_pred EEEEecCCC-------CCCcHHHHHHHHHhhhcCCCCH----HHHHHHHHHHHhhc----C-----CChhhHHHHHHHc-
Q 003231 666 LVLAATNRP-------FDLDEAIIRRFERRIMVGLPSA----ENREMILKTLLAKE----K-----VEDLDFKELAAMT- 724 (837)
Q Consensus 666 lVIaTTN~~-------~~Ld~aL~rRF~~~I~~~~P~~----eer~~IL~~~l~~~----~-----~~d~dl~~LA~~t- 724 (837)
.+|++||.. ..+.+.+..|+ ..+.+..|.. ++...++++++.+. + +++..++.|....
T Consensus 265 rii~at~~~l~~~v~~g~fr~dL~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 343 (368)
T 3dzd_A 265 RVISATNKNLEEEIKKGNFREDLYYRL-SVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEW 343 (368)
T ss_dssp EEEEEESSCHHHHHHTTSSCHHHHHHH-TSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCC
T ss_pred EEEEecCCCHHHHHHcCCccHHHHHHh-CCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 789998863 35677888888 4444444443 44556666665432 1 1333333333322
Q ss_pred CCCCHHHHHHHHHHHHH
Q 003231 725 EGYSGSDLKNLCVTAAY 741 (837)
Q Consensus 725 ~G~sg~DL~~L~~~Aa~ 741 (837)
+| +-++|++++..|+.
T Consensus 344 pG-NvreL~n~i~~~~~ 359 (368)
T 3dzd_A 344 KG-NVRELKNLIERAVI 359 (368)
T ss_dssp TT-HHHHHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHH
Confidence 22 23566666665544
No 138
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.63 E-value=1.2e-06 Score=95.21 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=54.4
Q ss_pred EEEEEccchhHhhhcHHHHHHHHHHHHh-----------ccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCCh
Q 003231 269 VILYLRDVDKLLFQSQRFYNLLDKLLKK-----------LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPED 337 (837)
Q Consensus 269 ~Ilfi~di~~~l~~~~~~~~~lk~~l~~-----------l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~ 337 (837)
.||||||+|.+ +.+..+.|...++. ++.++++|+++.-.++.....++++|.+||..++.|++|+.
T Consensus 111 ~vl~iDEi~~~---~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~ 187 (331)
T 2r44_A 111 NFILADEVNRS---PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDK 187 (331)
T ss_dssp SEEEEETGGGS---CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCH
T ss_pred cEEEEEccccC---CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCH
Confidence 69999999983 23344445455553 23456666543322222334589999999988899999999
Q ss_pred HHHHHHHHHHHH
Q 003231 338 ETHLVNWKAKLE 349 (837)
Q Consensus 338 e~rl~Ilk~~l~ 349 (837)
+++.+||+..+.
T Consensus 188 ~~~~~il~~~~~ 199 (331)
T 2r44_A 188 ESELEVMRRVSN 199 (331)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhccc
Confidence 999999998653
No 139
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.62 E-value=3.8e-07 Score=98.81 Aligned_cols=187 Identities=19% Similarity=0.208 Sum_probs=111.0
Q ss_pred ccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc------c
Q 003231 524 FADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTIT------S 597 (837)
Q Consensus 524 fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~------s 597 (837)
-+.++|.+...+.|.+++.. ...++|+||+|+|||+|++.+++..+ ++.+++.... .
T Consensus 11 ~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred hHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 34689999999999887743 15799999999999999999999886 6666654321 0
Q ss_pred ---------ccccc---------------------cHHHHHHHHH----HHHhcCCeEEEecccccccCCCCCcchHHHH
Q 003231 598 ---------KWFGE---------------------DEKNVRALFT----LAAKVSPTIIFVDEVDSMLGQRTRVGEHEAM 643 (837)
Q Consensus 598 ---------~~~G~---------------------~e~~l~~lf~----~A~~~~psVLfIDEID~L~~~r~~~~~~~~~ 643 (837)
..++. ....+..++. .+....|.+|+|||++.+...... ...
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~-~~~--- 149 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR-GGK--- 149 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT-TTH---
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc-chh---
Confidence 00000 0011222222 222234899999999988531000 011
Q ss_pred HHHHHHHHHhhccccccCCceEEEEEecCCCCCCc---------HHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcC--C
Q 003231 644 RKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLD---------EAIIRRFERRIMVGLPSAENREMILKTLLAKEK--V 712 (837)
Q Consensus 644 ~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld---------~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~--~ 712 (837)
.+...+...++.. .++.+|.|++....+. ..+..|+...+.+++.+.++..+++...+...+ +
T Consensus 150 -~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~ 223 (350)
T 2qen_A 150 -ELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV 223 (350)
T ss_dssp -HHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred -hHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1222222222221 1355555554321111 112223334678899999999999988776544 3
Q ss_pred ChhhHHHHHHHcCCCCHHHHHHHHHH
Q 003231 713 EDLDFKELAAMTEGYSGSDLKNLCVT 738 (837)
Q Consensus 713 ~d~dl~~LA~~t~G~sg~DL~~L~~~ 738 (837)
++..+..+...+.|+. .-+..++..
T Consensus 224 ~~~~~~~i~~~tgG~P-~~l~~~~~~ 248 (350)
T 2qen_A 224 PENEIEEAVELLDGIP-GWLVVFGVE 248 (350)
T ss_dssp CHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 6667888899999865 456666543
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.62 E-value=1.7e-06 Score=95.07 Aligned_cols=94 Identities=15% Similarity=0.082 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhh--cHHHHHHHHHHHHhc--cCCEEEEecccccCCCCCCchhHHHHccCC
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQ--SQRFYNLLDKLLKKL--SGSVLVLGSRMLEPEDDCRDVDERLTILFP 327 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~--~~~~~~~lk~~l~~l--~g~v~iiGs~~~~~~~~~~~~d~al~rrF~ 327 (837)
+++.+++.+.. ...|+||||||+|.+... .++....+-..+..+ .+++.+||++..... ...+++++.+||.
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~--~~~l~~~l~~r~~ 192 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF--VENLEPRVKSSLG 192 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT--SSSSCHHHHTTTT
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch--HhhhCHHHHhcCC
Confidence 45556665543 345999999999996654 344433332333322 467888887543321 2467899999997
Q ss_pred c-eeeeCCCChHHHHHHHHHHHH
Q 003231 328 Y-NLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 328 ~-~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
. .|.+++|+.++...|++..+.
T Consensus 193 ~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 193 EVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp SEECCBCCCCHHHHHHHHHHHHH
T ss_pred CeEEeeCCCCHHHHHHHHHHHHH
Confidence 5 899999999999999998653
No 141
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=4.1e-07 Score=105.57 Aligned_cols=185 Identities=10% Similarity=0.094 Sum_probs=116.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhcc-c-ccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccc
Q 003231 69 TFDEFPYYLSERTRMLLTSAAYVHLK-H-SEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 69 sf~~fpyylse~tk~~L~~~~~~hL~-~-~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~ 146 (837)
+|+++-+. +..+..|...+-.... + ..+.+.+.+-.+.++.+||+||+++++++||+|||++++.+++.++.+++.
T Consensus 37 ~~~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 37 NLQQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CHHHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 69998885 8888888777653221 1 122333333334678999999999999999999999999999999987764
Q ss_pred hhhhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccc
Q 003231 147 LKMQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSS 226 (837)
Q Consensus 147 ~~~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (837)
.+.. ... .+....... .+
T Consensus 115 ~~~~----------------~~~---~i~~~~~~~-----------~~-------------------------------- 132 (516)
T 1sxj_A 115 SKTL----------------LNA---GVKNALDNM-----------SV-------------------------------- 132 (516)
T ss_dssp CHHH----------------HHH---TGGGGTTBC-----------CS--------------------------------
T ss_pred hHHH----------------HHH---HHHHHhccc-----------cH--------------------------------
Confidence 3210 000 000000000 00
Q ss_pred ccCCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEec
Q 003231 227 ISSLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGS 306 (837)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs 306 (837)
..+... ..+ .......+.||||||+|.+..+...+.+.|...+.....+|++|++
T Consensus 133 ----------------~~~~~~-------~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~ 187 (516)
T 1sxj_A 133 ----------------VGYFKH-------NEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICN 187 (516)
T ss_dssp ----------------TTTTTC-------------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEES
T ss_pred ----------------HHHHhh-------hhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEc
Confidence 000000 000 0113347899999999996665566667777778876667888887
Q ss_pred ccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHHH
Q 003231 307 RMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 307 ~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~ 349 (837)
++.. ..+ ..+.+|. ..|.+++|+.+++..+|+....
T Consensus 188 ~~~~-----~~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 188 ERNL-----PKM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp CTTS-----STT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCC-----ccc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHH
Confidence 4422 122 2354554 5999999999999999986543
No 142
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.59 E-value=4.3e-07 Score=98.58 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=55.6
Q ss_pred CcEEEEEccchhHhh--h-cHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHHH
Q 003231 267 SSVILYLRDVDKLLF--Q-SQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETHL 341 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~--~-~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~rl 341 (837)
.+.||||||||.+-. . ...+++.++...+. |..+|++++. . ......++++|.+||. ..|++++ +.+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~--~~~iii~~~~-~-~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~ 172 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL--EKQIILASDR-H-PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRF 172 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT--TCEEEEEESS-C-GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEecC-C-hHHHHHhhhHhhhcccCceEEEeCC-CHHHHH
Confidence 478999999999543 2 24577777766664 6666776521 1 1112368999999996 4789999 999999
Q ss_pred HHHHHHHH
Q 003231 342 VNWKAKLE 349 (837)
Q Consensus 342 ~Ilk~~l~ 349 (837)
.||+..+.
T Consensus 173 ~il~~~~~ 180 (324)
T 1l8q_A 173 KIIKEKLK 180 (324)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998653
No 143
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.59 E-value=2.1e-08 Score=108.67 Aligned_cols=120 Identities=16% Similarity=0.250 Sum_probs=67.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGAS--FINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQR 634 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~--~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r 634 (837)
.+...++|+||||||||+||.++|...|.+ |+.+...+..+.+....+..+..+++...+.. +||||+++.+....
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA 198 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence 445668999999999999999999876544 55552233333333344555555666665544 99999999986543
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHH
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAI 681 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL 681 (837)
..........+.+.+++..+.+..... ++.+|+++| +...++++
T Consensus 199 ~~~s~~G~v~~~lrqlL~~L~~~~k~~--gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GGNTTSGGISRGAFDLLSDIGAMAASR--GCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHHHH--TCEEEEECC-CSSCSSSH
T ss_pred ccccccchHHHHHHHHHHHHHHHHhhC--CCEEEEEeC-CcccchhH
Confidence 221110011122334444444332222 367788888 44555544
No 144
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.58 E-value=1.2e-07 Score=100.36 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccc
Q 003231 107 PASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVND 144 (837)
Q Consensus 107 ~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~ 144 (837)
..++.|||+||+++++++||+|+|++.+.+++.++..+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~ 99 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 99 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH
Confidence 56678999999999999999999999999998887643
No 145
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.57 E-value=1.2e-06 Score=95.52 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=53.3
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHh-------------ccCCEEEEecccccCCCCCCchhHHHHccCCceeeeC
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKK-------------LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVK 333 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~-------------l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~ 333 (837)
.+.||||||+|.+-. +..+.|-..++. .+.++++||++... ...++++|.+||..++.++
T Consensus 144 ~~~vl~iDEi~~l~~---~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~----~~~l~~~L~~R~~~~~~l~ 216 (350)
T 1g8p_A 144 NRGYLYIDECNLLED---HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPE----EGDLRPQLLDRFGLSVEVL 216 (350)
T ss_dssp TTEEEEETTGGGSCH---HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSC----SCCCCHHHHTTCSEEEECC
T ss_pred CCCEEEEeChhhCCH---HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCC----CCCCCHHHHhhcceEEEcC
Confidence 578999999999422 233334444553 12378888874321 2368999999998789999
Q ss_pred CC-ChHHHHHHHHHHHH
Q 003231 334 LP-EDETHLVNWKAKLE 349 (837)
Q Consensus 334 ~P-~~e~rl~Ilk~~l~ 349 (837)
+| +.+.+..|++..+.
T Consensus 217 ~~~~~~~~~~il~~~~~ 233 (350)
T 1g8p_A 217 SPRDVETRVEVIRRRDT 233 (350)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh
Confidence 99 67788899987543
No 146
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.56 E-value=1.6e-07 Score=107.11 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=57.1
Q ss_pred CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 266 TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
..+.||||||||.+-...+ +.|-+.++. |.|++||+||.+. ...++++|.+|+. .+.+.+|+.++...+++
T Consensus 105 ~~~~iLfIDEI~~l~~~~q---~~LL~~le~--~~v~lI~att~n~---~~~l~~aL~sR~~-v~~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQ---DAFLPHIED--GTITFIGATTENP---SFELNSALLSRAR-VYLLKSLSTEDIEQVLT 175 (447)
T ss_dssp TCCEEEEEETTTCC---------CCHHHHHT--TSCEEEEEESSCG---GGSSCHHHHTTEE-EEECCCCCHHHHHHHHH
T ss_pred CCCcEEEEeChhhhCHHHH---HHHHHHHhc--CceEEEecCCCCc---ccccCHHHhCcee-EEeeCCcCHHHHHHHHH
Confidence 4789999999999533222 334456665 8999999976543 3678999999997 99999999999999999
Q ss_pred HHHH
Q 003231 346 AKLE 349 (837)
Q Consensus 346 ~~l~ 349 (837)
..+.
T Consensus 176 ~~l~ 179 (447)
T 3pvs_A 176 QAME 179 (447)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 147
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.55 E-value=4.3e-07 Score=103.35 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=85.2
Q ss_pred CcEEEEEccchhHhh--hc-HHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHHH
Q 003231 267 SSVILYLRDVDKLLF--QS-QRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETHL 341 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~--~~-~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~rl 341 (837)
+|.||||||+|.+.. .. ..+++.+....+. |..+||+++. .......++++|.+||. ..+++++|+.++|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~--~~~iIitt~~--~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~ 269 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDR--EPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT--TCEEEEEESS--CGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEECC--CHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHH
Confidence 688999999999653 22 4477777776664 6777776521 11112337899999995 58999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceeec
Q 003231 342 VNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVIS 421 (837)
Q Consensus 342 ~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~ 421 (837)
.||+..+... . +. .. +-....|...+-. ..-+++.+++.+..++...+. .|+
T Consensus 270 ~iL~~~~~~~--~--~~----------i~-~e~l~~la~~~~g----n~R~l~~~L~~~~~~a~~~~~---------~It 321 (440)
T 2z4s_A 270 SIARKMLEIE--H--GE----------LP-EEVLNFVAENVDD----NLRRLRGAIIKLLVYKETTGK---------EVD 321 (440)
T ss_dssp HHHHHHHHHH--T--CC----------CC-TTHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHSSS---------CCC
T ss_pred HHHHHHHHHc--C--CC----------CC-HHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCC---------CCC
Confidence 9999765421 1 11 11 1112334444433 445677777777777643321 278
Q ss_pred HHhHHHHHH
Q 003231 422 SKSLSHGLS 430 (837)
Q Consensus 422 ~~~~~~~l~ 430 (837)
.++++.++.
T Consensus 322 ~~~~~~~l~ 330 (440)
T 2z4s_A 322 LKEAILLLK 330 (440)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHH
Confidence 888888887
No 148
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.51 E-value=6.4e-07 Score=91.61 Aligned_cols=132 Identities=9% Similarity=0.065 Sum_probs=78.3
Q ss_pred CcEEEEEccchhHhhhc---HHHHHHHHHHHHhccCCE-EEEecccccCCCCCCchhHHHHccCC--ceeeeCCCChHHH
Q 003231 267 SSVILYLRDVDKLLFQS---QRFYNLLDKLLKKLSGSV-LVLGSRMLEPEDDCRDVDERLTILFP--YNLEVKLPEDETH 340 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~---~~~~~~lk~~l~~l~g~v-~iiGs~~~~~~~~~~~~d~al~rrF~--~~IeI~~P~~e~r 340 (837)
+|.||||||+|.+-... ..++..++..... +.+ +|+.++... ......++++.+||. ..|++++|+.+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~--~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~ 179 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ--KRGSLIVSASASP--MEAGFVLPDLVSRMHWGLTYQLQPMMDDEK 179 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH--CSCEEEEEESSCT--TTTTCCCHHHHHHHHHSEEEECCCCCGGGH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHc--CCCeEEEEcCCCH--HHHHHhhhhhhhHhhcCceEEeCCCCHHHH
Confidence 57899999999954322 2355666555554 554 555443221 112245688999995 6999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCceee
Q 003231 341 LVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVI 420 (837)
Q Consensus 341 l~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i 420 (837)
..+|+..+.+. ...-..+ ....|...+-. ...++..++..+..++..... .|
T Consensus 180 ~~~l~~~~~~~----~~~~~~~-----------~~~~l~~~~~g----~~r~l~~~l~~~~~~a~~~~~---------~I 231 (242)
T 3bos_A 180 LAALQRRAAMR----GLQLPED-----------VGRFLLNRMAR----DLRTLFDVLDRLDKASMVHQR---------KL 231 (242)
T ss_dssp HHHHHHHHHHT----TCCCCHH-----------HHHHHHHHTTT----CHHHHHHHHHHHHHHHHHHTC---------CC
T ss_pred HHHHHHHHHHc----CCCCCHH-----------HHHHHHHHccC----CHHHHHHHHHHHHHHHHHhCC---------CC
Confidence 99999865421 1111111 11223333322 234566666666666643221 27
Q ss_pred cHHhHHHHHH
Q 003231 421 SSKSLSHGLS 430 (837)
Q Consensus 421 ~~~~~~~~l~ 430 (837)
+.++++.++.
T Consensus 232 t~~~v~~~l~ 241 (242)
T 3bos_A 232 TIPFVKEMLR 241 (242)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHhh
Confidence 8888888775
No 149
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.49 E-value=1.2e-06 Score=93.93 Aligned_cols=85 Identities=8% Similarity=0.072 Sum_probs=58.5
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhcc-----------CCEEEEeccccc------------CCCC---------
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLS-----------GSVLVLGSRMLE------------PEDD--------- 314 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~-----------g~v~iiGs~~~~------------~~~~--------- 314 (837)
...||||||+|++ ..+..+.|-..|+.-. .++++|+++... .+.+
T Consensus 119 ~~~vl~lDEi~~l---~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~ 195 (311)
T 4fcw_A 119 PYSVILFDAIEKA---HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVL 195 (311)
T ss_dssp SSEEEEEETGGGS---CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHH
T ss_pred CCeEEEEeChhhc---CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHH
Confidence 5689999999994 2345555666666422 145566664431 0000
Q ss_pred CCchhHHHHccCCceeeeCCCChHHHHHHHHHHHHHHHHH
Q 003231 315 CRDVDERLTILFPYNLEVKLPEDETHLVNWKAKLEEDMKV 354 (837)
Q Consensus 315 ~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l~~d~~~ 354 (837)
....+++|..||+..+.+.+|+.++...|++.++.+....
T Consensus 196 ~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~ 235 (311)
T 4fcw_A 196 QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRAR 235 (311)
T ss_dssp HHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 2245778889999899999999999999999988776654
No 150
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.49 E-value=4.3e-07 Score=98.00 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=101.8
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccchh
Q 003231 69 TFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFSLK 148 (837)
Q Consensus 69 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~~~ 148 (837)
+|++|-+. +..+..|..++-..... ....+.|||+||++.++++||+++|+.++.++..++...+..
T Consensus 10 ~~~~~ig~--~~~~~~l~~~l~~~~~~----------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 10 TLDEYIGQ--ERLKQKLRVYLEAAKAR----------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp STTTCCSC--HHHHHHHHHHHHHHHHH----------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred cHHHhhCH--HHHHHHHHHHHHHHHcc----------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 58888775 66666666554322110 124578999999999999999999999998877665433310
Q ss_pred hhhhcCCCCCCccccccchhhhhhhhhccccccccCCCCccccccccccCCccccccccccCCCCCcccccCCCCccccc
Q 003231 149 MQNKYGCARKEPSFKRSISEMTLERMSGLLGSFSKLPPREENKGTLHRQSSNVDLKSRCMEGSSFLPKHRRNASDMSSIS 228 (837)
Q Consensus 149 ~~~~~g~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (837)
T Consensus 77 -------------------------------------------------------------------------------- 76 (324)
T 1hqc_A 77 -------------------------------------------------------------------------------- 76 (324)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccCCccccchHHHHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHHHHHHHHHHHHhcc----------
Q 003231 229 SLGASPSPAPLKRISSWCFDEKLFLQSLYKVLVSITETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLS---------- 298 (837)
Q Consensus 229 ~~~~~~~~~~~~~~~~w~~~~k~~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~---------- 298 (837)
...++..+.. +-..+.+|||||||.+-...+ +.|...++...
T Consensus 77 ------------------------~~~l~~~l~~-~~~~~~~l~lDEi~~l~~~~~---~~L~~~l~~~~~~~v~~~~~~ 128 (324)
T 1hqc_A 77 ------------------------PGDLAAILAN-SLEEGDILFIDEIHRLSRQAE---EHLYPAMEDFVMDIVIGQGPA 128 (324)
T ss_dssp ------------------------HHHHHHHHTT-TCCTTCEEEETTTTSCCHHHH---HHHHHHHHHSEEEECCSSSSS
T ss_pred ------------------------hHHHHHHHHH-hccCCCEEEEECCcccccchH---HHHHHHHHhhhhHHhcccccc
Confidence 0012222222 113678999999998543222 33334444321
Q ss_pred --------CCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHHH
Q 003231 299 --------GSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 299 --------g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
.++++|++ +++...++++|.+||...+.+.+|+.+++..+++..+
T Consensus 129 ~~~~~~~~~~~~~i~~-----t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~ 181 (324)
T 1hqc_A 129 ARTIRLELPRFTLIGA-----TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDA 181 (324)
T ss_dssp CCCEEEECCCCEEEEE-----ESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHH
T ss_pred ccccccCCCCEEEEEe-----CCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHH
Confidence 24677777 3444567888999997799999999999988888653
No 151
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.44 E-value=1.6e-07 Score=101.77 Aligned_cols=113 Identities=20% Similarity=0.341 Sum_probs=66.5
Q ss_pred HHHhhCCCccCCCCCCccccccccch----HHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003231 506 FEKRIRPEVIPANEIGVTFADIGALN----EIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 506 ~~~~l~~~~i~~~~~~v~fddIiG~d----~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~ 581 (837)
....++..-++......+|+++.+.+ .+.+.+..++... +. .+..+++|+||||||||+||+++|.
T Consensus 105 ~~~~~~~~~l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~~-------~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 105 ISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQY---PS-------AEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHTEEEESSCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHC---SC-------SSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhc---cc-------cCCceEEEECCCCCCHHHHHHHHHH
Confidence 44444444444433345899988644 2333444444321 10 1357899999999999999999998
Q ss_pred Hh----CCcEEEEeccccccccccc-cHHHHHHHHHHHHhcCCeEEEecccccc
Q 003231 582 EA----GASFINVSMSTITSKWFGE-DEKNVRALFTLAAKVSPTIIFVDEVDSM 630 (837)
Q Consensus 582 el----g~~~i~v~~s~l~s~~~G~-~e~~l~~lf~~A~~~~psVLfIDEID~L 630 (837)
++ |.+++.++++++...+... .......++.... .+.+|||||++..
T Consensus 175 ~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 175 ELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 65 4788888887765543221 1111112222222 3469999999754
No 152
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.44 E-value=3.9e-08 Score=85.57 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHhhcccchhhhH
Q 003231 697 ENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDLKNLCVTAAYRPVRELIQEERKKDMEKKKREEAAKSSEDASETK 775 (837)
Q Consensus 697 eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL~~L~~~Aa~~av~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (837)
++|.+||+.++++.++ +++++..||..|+||||+||.++|++|++.|+++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~---------------------------- 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN---------------------------- 52 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT----------------------------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----------------------------
Confidence 4689999999988776 78999999999999999999999999999998751
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHHHhh
Q 003231 776 EEAKEERVITLRPLNMEDMRQAKNQVA 802 (837)
Q Consensus 776 ~e~~~~~~~~~~~lt~eDf~~Al~~v~ 802 (837)
..+|+++||..|+.++.
T Consensus 53 ----------~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 53 ----------RYVILQSDLEEAYATQV 69 (82)
T ss_dssp ----------CSEECHHHHHHHHHTTC
T ss_pred ----------cCCcCHHHHHHHHHHHH
Confidence 14699999999999984
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.38 E-value=5.8e-06 Score=83.72 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=57.9
Q ss_pred cCCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHH
Q 003231 265 ETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNW 344 (837)
Q Consensus 265 ~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Il 344 (837)
..+|.||+|||+|.+- .+..+.|...+++.+.++.+|.++ ++...++.++.+|+ ..|++++|+.++...++
T Consensus 124 ~~~~~vlviDe~~~l~---~~~~~~l~~~l~~~~~~~~~i~~t-----~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l 194 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLS---RHSFNALLKTLEEPPEHVKFLLAT-----TDPQKLPVTILSRC-LQFHLKALDVEQIRHQL 194 (250)
T ss_dssp SSSSEEEEEETGGGSC---HHHHHHHHHHHHSCCTTEEEEEEE-----SCGGGSCHHHHTTS-EEEECCCCCHHHHHHHH
T ss_pred cCCceEEEEECccccc---HHHHHHHHHHHhcCCCceEEEEEe-----CChHhCCHHHHHHh-hhccCCCCCHHHHHHHH
Confidence 3468999999999942 344555666777766788877763 34456788999998 59999999999999999
Q ss_pred HHHHH
Q 003231 345 KAKLE 349 (837)
Q Consensus 345 k~~l~ 349 (837)
+..+.
T Consensus 195 ~~~~~ 199 (250)
T 1njg_A 195 EHILN 199 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 154
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.31 E-value=1.1e-07 Score=96.76 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=76.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH--------hC-CcEEEEeccccccccc----------cc-----cHHHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANE--------AG-ASFINVSMSTITSKWF----------GE-----DEKNVRALFTLAA 615 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~e--------lg-~~~i~v~~s~l~s~~~----------G~-----~e~~l~~lf~~A~ 615 (837)
...|++|+||+|||++|.+.+.. .| .+++..++.++..... .. ....+...+.. .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-P 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-G
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-c
Confidence 46899999999999999887543 34 6666666665543222 11 11122222111 2
Q ss_pred hcCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCC
Q 003231 616 KVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPS 695 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~ 695 (837)
....+||+|||++.+.+.+....+ . ..++..+... ....+-||.+|+.+..++.++++|+...+++..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e--~-----~rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSK--I-----PENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCC--C-----CHHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccch--h-----HHHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcc
Confidence 234689999999999765422111 0 0133333322 23345677778889999999999998888877654
No 155
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.31 E-value=5.7e-06 Score=91.14 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhhc-HHH-HHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCce
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQS-QRF-YNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYN 329 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-~~~-~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~ 329 (837)
+++.+++.+.. ..+ ||||||+|.+.... .+. ...+ +.-. .++.+|+++..... ...+++++.+||...
T Consensus 122 ~~~~l~~~l~~---~~~-vlilDEi~~l~~~~~~~~~l~~l---~~~~-~~~~iI~~t~~~~~--~~~l~~~l~sr~~~~ 191 (384)
T 2qby_B 122 YIDKIKNGTRN---IRA-IIYLDEVDTLVKRRGGDIVLYQL---LRSD-ANISVIMISNDINV--RDYMEPRVLSSLGPS 191 (384)
T ss_dssp HHHHHHHHHSS---SCE-EEEEETTHHHHHSTTSHHHHHHH---HTSS-SCEEEEEECSSTTT--TTTSCHHHHHTCCCE
T ss_pred HHHHHHHHhcc---CCC-EEEEECHHHhccCCCCceeHHHH---hcCC-cceEEEEEECCCch--HhhhCHHHHhcCCCe
Confidence 45555554433 344 99999999965432 333 3222 3322 68888887433211 156789999998779
Q ss_pred eeeCCCChHHHHHHHHHHHH
Q 003231 330 LEVKLPEDETHLVNWKAKLE 349 (837)
Q Consensus 330 IeI~~P~~e~rl~Ilk~~l~ 349 (837)
|.+++|+.++...||+..+.
T Consensus 192 i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 192 VIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp EEECCCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 99999999999999997653
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=5.9e-06 Score=88.58 Aligned_cols=74 Identities=16% Similarity=0.096 Sum_probs=58.0
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.+.||+|||+|.+-. +..+.|...++..++++.+|.++ ++...++++|.+|+. .|.+.+|+.++...+++.
T Consensus 107 ~~~viiiDe~~~l~~---~~~~~L~~~le~~~~~~~~il~~-----~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~ 177 (323)
T 1sxj_B 107 KHKIVILDEADSMTA---GAQQALRRTMELYSNSTRFAFAC-----NQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQ 177 (323)
T ss_dssp CCEEEEEESGGGSCH---HHHHTTHHHHHHTTTTEEEEEEE-----SCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHH
T ss_pred CceEEEEECcccCCH---HHHHHHHHHHhccCCCceEEEEe-----CChhhchhHHHhhce-EEeecCCCHHHHHHHHHH
Confidence 489999999999433 34455667777777778877763 445678899999996 999999999999999987
Q ss_pred HHH
Q 003231 347 KLE 349 (837)
Q Consensus 347 ~l~ 349 (837)
.+.
T Consensus 178 ~~~ 180 (323)
T 1sxj_B 178 IIK 180 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=1.1e-05 Score=86.57 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=56.8
Q ss_pred CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 266 TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
..+.||+|||+|.+- .+..+.|...++..+.++++|.+ ++....+++++.+|+. .+.+++|+.++...+++
T Consensus 109 ~~~~vliiDe~~~l~---~~~~~~L~~~le~~~~~~~~i~~-----~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~ 179 (327)
T 1iqp_A 109 ASFKIIFLDEADALT---QDAQQALRRTMEMFSSNVRFILS-----CNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLR 179 (327)
T ss_dssp CSCEEEEEETGGGSC---HHHHHHHHHHHHHTTTTEEEEEE-----ESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHH
T ss_pred CCCeEEEEeCCCcCC---HHHHHHHHHHHHhcCCCCeEEEE-----eCCccccCHHHHhhCc-EEEecCCCHHHHHHHHH
Confidence 468899999999942 23455566777777778887775 3445668899999997 99999999999988887
Q ss_pred HH
Q 003231 346 AK 347 (837)
Q Consensus 346 ~~ 347 (837)
..
T Consensus 180 ~~ 181 (327)
T 1iqp_A 180 YI 181 (327)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 158
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.19 E-value=3.1e-05 Score=84.78 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhhc-HHHHHHHHHHHHhc-cCCEEEEecccccCCCCCCchhHHHHccCC-c
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQS-QRFYNLLDKLLKKL-SGSVLVLGSRMLEPEDDCRDVDERLTILFP-Y 328 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~-~~~~~~lk~~l~~l-~g~v~iiGs~~~~~~~~~~~~d~al~rrF~-~ 328 (837)
+++.+++.+.. ...|+||+|||+|.+.... .+....+...++.+ ..++.+|+++..... ...++.++.+||. .
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~--~~~~~~~~~~r~~~~ 190 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF--VDLLDPRVKSSLSEE 190 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG--GGGCTTHHHHTTTTE
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh--HhhhCHHHhccCCCe
Confidence 45566666654 2349999999999976553 45555555555432 357777776432211 1345677777775 3
Q ss_pred eeeeCCCChHHHHHHHHHHH
Q 003231 329 NLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l 348 (837)
.|.+++|+.++...+|+..+
T Consensus 191 ~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 191 EIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp EEEECCCCHHHHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHH
Confidence 89999999999999999755
No 159
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.18 E-value=2.9e-06 Score=114.42 Aligned_cols=140 Identities=20% Similarity=0.324 Sum_probs=90.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccccccccccHHHHHHHHHHH----Hh------------cCCeE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA-GASFINVSMSTITSKWFGEDEKNVRALFTLA----AK------------VSPTI 621 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el-g~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A----~~------------~~psV 621 (837)
.+++||+||||||||++++.+...+ +.+++.++++.-.+ ...+...++.. .. ....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4679999999999998876655444 67788888876543 22333333321 00 11259
Q ss_pred EEecccccccCCCCCcchHHHHHHHHHHHHHhhcccccc-C-----CceEEEEEecCCC-----CCCcHHHHHHHHHhhh
Q 003231 622 IFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTR-N-----GERILVLAATNRP-----FDLDEAIIRRFERRIM 690 (837)
Q Consensus 622 LfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~-~-----~~~vlVIaTTN~~-----~~Ld~aL~rRF~~~I~ 690 (837)
+||||++.-.....+ .+. .-.++.+++..- ++... . -.++.+|||+|+| ..++++++||| .++.
T Consensus 1378 lFiDDiNmp~~D~yG--tQ~-~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~ 1452 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKYG--TQR-VITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILL 1452 (3245)
T ss_dssp EEETTTTCCCCCTTS--CCH-HHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEE
T ss_pred EEecccCCCCccccc--ccc-HHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEE
Confidence 999999964333222 221 123333343321 11111 1 1357899999987 46999999999 7799
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 003231 691 VGLPSAENREMILKTLLAK 709 (837)
Q Consensus 691 ~~~P~~eer~~IL~~~l~~ 709 (837)
++.|+.+....|+..++..
T Consensus 1453 i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999998877654
No 160
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.15 E-value=2.2e-06 Score=87.04 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=60.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVG 638 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~ 638 (837)
.+++||+||||||||++|.++|+.+...++.+..+.. ..+ +..+ ....||+|||++.-
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l--~~~kIiiLDEad~~-------- 115 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPL--TDTKVAMLDDATTT-------- 115 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGG--TTCSSEEEEEECHH--------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hccc--CCCCEEEEECCCch--------
Confidence 4579999999999999999999998765543221110 000 0111 12359999999832
Q ss_pred hHHHHHHHHHHHHHhhcccc---ccCC------ceEEEEEecCCC---CCCcHHHHHHHHHhhhcCC
Q 003231 639 EHEAMRKIKNEFMTHWDGLL---TRNG------ERILVLAATNRP---FDLDEAIIRRFERRIMVGL 693 (837)
Q Consensus 639 ~~~~~~~i~~~Ll~~ld~~~---~~~~------~~vlVIaTTN~~---~~Ld~aL~rRF~~~I~~~~ 693 (837)
..+.+...+...+++.. .... ....+|.|||.. +.--+.+.+|+ ..+.|+.
T Consensus 116 ---~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~ 178 (212)
T 1tue_A 116 ---CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPN 178 (212)
T ss_dssp ---HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCS
T ss_pred ---hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCC
Confidence 11112223344455531 0000 124677888874 22235677787 4555553
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.15 E-value=2.3e-06 Score=91.66 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=57.9
Q ss_pred CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 266 TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
..+.||+|||+|.+-. +..+.|...++..+.++++|.+ ++....++++|.+|+. .|.+.+|+.++...+++
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~L~~~le~~~~~~~~i~~-----~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILS-----CNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLL 171 (319)
T ss_dssp CCCEEEEEETGGGSCH---HHHHTTGGGTSSSSSSEEEEEE-----ESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCH---HHHHHHHHHHHhcCCCCeEEEE-----eCChhhcchHHHhhCe-EEEecCCCHHHHHHHHH
Confidence 4689999999999432 3445566677777778888876 3445678999999996 99999999999998888
Q ss_pred HHH
Q 003231 346 AKL 348 (837)
Q Consensus 346 ~~l 348 (837)
..+
T Consensus 172 ~~~ 174 (319)
T 2chq_A 172 EIC 174 (319)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 162
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.09 E-value=6.1e-06 Score=107.47 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=79.1
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----ccc------------ccHHHHHHHHHHH
Q 003231 554 GLLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK----WFG------------EDEKNVRALFTLA 614 (837)
Q Consensus 554 ~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~----~~G------------~~e~~l~~lf~~A 614 (837)
+++.+..+++|+||||||||+||.+++.++ |.....++..+.... ..| ..+..++.++..+
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 356788899999999999999999998776 667777777654321 112 3356677777788
Q ss_pred HhcCCeEEEecccccccCCCC---Ccc--hHHHHHHHHHHHHHhhccccccCCceEEEEEecCC
Q 003231 615 AKVSPTIIFVDEVDSMLGQRT---RVG--EHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR 673 (837)
Q Consensus 615 ~~~~psVLfIDEID~L~~~r~---~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~ 673 (837)
+..+|++||||+++.+.+... ..+ ......+++.+++..+.+.....+ ++|| +||.
T Consensus 1502 r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~--v~VI-~tNq 1562 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLI-FINQ 1562 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT--CEEE-EEEC
T ss_pred hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC--cEEE-EEcc
Confidence 888999999999998876321 001 111134566777777777655544 4444 4454
No 163
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.08 E-value=5.2e-05 Score=83.39 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhhcHHHHHHHHHHHHhcc----CCEEEEecccccCCCCCCchhHHHHccCC
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLS----GSVLVLGSRMLEPEDDCRDVDERLTILFP 327 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~----g~v~iiGs~~~~~~~~~~~~d~al~rrF~ 327 (837)
+++.+...+.. ..+|.||+|||+|.+ ..+..+.|...+..+. .++.+|+++..... ...++..+.+||.
T Consensus 112 ~~~~l~~~l~~--~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~--~~~l~~~~~~r~~ 184 (389)
T 1fnn_A 112 FLALLVEHLRE--RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV--LNNLDPSTRGIMG 184 (389)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH--HHTSCHHHHHHHT
T ss_pred HHHHHHHHHhh--cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH--HHHhCHHhhhcCC
Confidence 55666666654 346999999999995 4556666666666554 37777776322111 1346778888886
Q ss_pred c-eeeeCCCChHHHHHHHHHHH
Q 003231 328 Y-NLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 328 ~-~IeI~~P~~e~rl~Ilk~~l 348 (837)
. .|.+++++.++...+++..+
T Consensus 185 ~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 185 KYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp TCEEECCCCBHHHHHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHH
Confidence 5 79999999999999998754
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.08 E-value=2.5e-05 Score=85.60 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 266 TSSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
..+.||+|||+|.+ . .+..+.|...++..++++++|++++ +...+++++.+|+ ..|++.+|+.++...+++
T Consensus 118 ~~~~vliiDe~~~l-~--~~~~~~Ll~~le~~~~~~~~Il~~~-----~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~ 188 (373)
T 1jr3_A 118 GRFKVYLIDEVHML-S--RHSFNALLKTLEEPPEHVKFLLATT-----DPQKLPVTILSRC-LQFHLKALDVEQIRHQLE 188 (373)
T ss_dssp SSSEEEEEECGGGS-C--HHHHHHHHHHHHSCCSSEEEEEEES-----CGGGSCHHHHTTS-EEEECCCCCHHHHHHHHH
T ss_pred CCeEEEEEECcchh-c--HHHHHHHHHHHhcCCCceEEEEEeC-----ChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHH
Confidence 35799999999994 2 3455667778888888888888743 4456788999998 599999999999999998
Q ss_pred HHHH
Q 003231 346 AKLE 349 (837)
Q Consensus 346 ~~l~ 349 (837)
..+.
T Consensus 189 ~~~~ 192 (373)
T 1jr3_A 189 HILN 192 (373)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=2.7e-05 Score=84.72 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=54.6
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
.+.||||||+|.+-.. ..+.|...++..+.+..+|-+ ++....++++|.+|+. .|.+.+|+.++...+++.
T Consensus 133 ~~~vliiDE~~~l~~~---~~~~Ll~~le~~~~~~~~il~-----~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~ 203 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD---AQSALRRTMETYSGVTRFCLI-----CNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRF 203 (353)
T ss_dssp SCEEEEETTGGGSCHH---HHHHHHHHHHHTTTTEEEEEE-----ESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHH
T ss_pred CceEEEEECCCccCHH---HHHHHHHHHHhcCCCceEEEE-----eCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHH
Confidence 5679999999995332 334456667776666665544 2445678999999997 999999999999999986
Q ss_pred HH
Q 003231 347 KL 348 (837)
Q Consensus 347 ~l 348 (837)
.+
T Consensus 204 ~~ 205 (353)
T 1sxj_D 204 IS 205 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 166
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.03 E-value=3.2e-05 Score=84.02 Aligned_cols=81 Identities=5% Similarity=0.091 Sum_probs=54.5
Q ss_pred hcCCcEEEEEccchhHhhhcHH-HHHHHHHHHHhccCCEEEEecc-cccCCCCCCchhHHHHccCC-ceeeeCCCChHHH
Q 003231 264 TETSSVILYLRDVDKLLFQSQR-FYNLLDKLLKKLSGSVLVLGSR-MLEPEDDCRDVDERLTILFP-YNLEVKLPEDETH 340 (837)
Q Consensus 264 ~~~~p~Ilfi~di~~~l~~~~~-~~~~lk~~l~~l~g~v~iiGs~-~~~~~~~~~~~d~al~rrF~-~~IeI~~P~~e~r 340 (837)
.+..|+||||||+|.+. .++ +|+++. .-..-.+++.+||-. +.+ .....+++++..||. ..|.+++++.++-
T Consensus 129 ~~~~~~ii~lDE~d~l~--~q~~L~~l~~-~~~~~~s~~~vI~i~n~~d--~~~~~L~~~v~SR~~~~~i~F~pYt~~el 203 (318)
T 3te6_A 129 AKKRKTLILIQNPENLL--SEKILQYFEK-WISSKNSKLSIICVGGHNV--TIREQINIMPSLKAHFTEIKLNKVDKNEL 203 (318)
T ss_dssp GGSCEEEEEEECCSSSC--CTHHHHHHHH-HHHCSSCCEEEEEECCSSC--CCHHHHHTCHHHHTTEEEEECCCCCHHHH
T ss_pred ccCCceEEEEecHHHhh--cchHHHHHHh-cccccCCcEEEEEEecCcc--cchhhcchhhhccCCceEEEeCCCCHHHH
Confidence 35679999999999976 444 666554 222223567766541 111 111235667777885 5899999999999
Q ss_pred HHHHHHHHH
Q 003231 341 LVNWKAKLE 349 (837)
Q Consensus 341 l~Ilk~~l~ 349 (837)
..|++..+.
T Consensus 204 ~~Il~~Rl~ 212 (318)
T 3te6_A 204 QQMIITRLK 212 (318)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998654
No 167
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.00 E-value=2.2e-05 Score=106.07 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=92.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccCCCCCcch
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGE 639 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~~r~~~~~ 639 (837)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-.. ...+..+|.-+... .+..++|||+++-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~-------- 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLE-------- 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSC--------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCC--------
Confidence 46679999999999999999999999999999987433 23456666666554 4788999999873
Q ss_pred HHHHHHHHHHHH---Hhhc----------cccccCCceEEEEEecCC----CCCCcHHHHHHHHHhhhcCCCCHHHHHHH
Q 003231 640 HEAMRKIKNEFM---THWD----------GLLTRNGERILVLAATNR----PFDLDEAIIRRFERRIMVGLPSAENREMI 702 (837)
Q Consensus 640 ~~~~~~i~~~Ll---~~ld----------~~~~~~~~~vlVIaTTN~----~~~Ld~aL~rRF~~~I~~~~P~~eer~~I 702 (837)
.+.+.-+.+++. ..+. |-...-+..+.|++|.|+ ...|++.++.|| +.+.+..||.+...+|
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei 748 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQV 748 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHH
Confidence 222222222221 1111 111112234678889885 468999999999 7899999999877777
Q ss_pred HHHHHhhcCC
Q 003231 703 LKTLLAKEKV 712 (837)
Q Consensus 703 L~~~l~~~~~ 712 (837)
+ +...++
T Consensus 749 ~---L~s~Gf 755 (3245)
T 3vkg_A 749 M---LYSQGF 755 (3245)
T ss_dssp H---HHTTTC
T ss_pred H---HHHccc
Confidence 5 334444
No 168
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.99 E-value=3.8e-06 Score=80.24 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=32.4
Q ss_pred CCCCceEeecChhHHHHHHHHHHhhhhCCeEEEeeccccc
Q 003231 107 PASRTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDFS 146 (837)
Q Consensus 107 ~~~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~~ 146 (837)
.....|||+||++.++++||||++++.+ +++.++...+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~ 63 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYL 63 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHH
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCC
Confidence 3456799999999999999999999988 77777665543
No 169
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.97 E-value=6.2e-05 Score=78.95 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=41.2
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhhhhC---CeEEEeecc
Q 003231 67 KTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAHFFE---SKLLLLDVN 143 (837)
Q Consensus 67 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~~~~---a~ll~ld~~ 143 (837)
+.||++|-+. |+..+.++..+..+ ......|||+||++.++++||||++++.. .+++.++.+
T Consensus 2 ~~~f~~~ig~-~~~~~~~~~~~~~~--------------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 2 AEYKDNLLGE-ANSFLEVLEQVSHL--------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp --------CC-CHHHHHHHHHHHHH--------------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CcccccceeC-CHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 3579998774 55544444333221 12346899999999999999999999985 679999988
Q ss_pred ccc
Q 003231 144 DFS 146 (837)
Q Consensus 144 ~~~ 146 (837)
.+.
T Consensus 67 ~~~ 69 (265)
T 2bjv_A 67 ALN 69 (265)
T ss_dssp GSC
T ss_pred CCC
Confidence 774
No 170
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.96 E-value=4.5e-05 Score=83.27 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEeccccccccccccHHHHHHHHHHHHh----cCCeEEEeccccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GA-SFINVSMSTITSKWFGEDEKNVRALFTLAAK----VSPTIIFVDEVDS 629 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~-~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~----~~psVLfIDEID~ 629 (837)
..+.+||+||+|.||++.++.+++.+ +. ++..+... + ...++.+++.+.. ....|++|||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45689999999999999999998876 32 22222111 1 1224455554432 3467999999997
Q ss_pred -ccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCC-----CCCCcHHHHHHHHHhhhcCCCCHHHHHHHH
Q 003231 630 -MLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNR-----PFDLDEAIIRRFERRIMVGLPSAENREMIL 703 (837)
Q Consensus 630 -L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~-----~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL 703 (837)
+.. ...+.|+..++.. +...++|+++++. ...+.+++.+|+ .++.+..++..+....+
T Consensus 88 kl~~------------~~~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 88 GPNA------------AINEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp CCCT------------THHHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHH
T ss_pred CCCh------------HHHHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHH
Confidence 632 2334455555432 2233455555432 234667888888 67899999999999999
Q ss_pred HHHHhhcCC--ChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 003231 704 KTLLAKEKV--EDLDFKELAAMTEGYSGSDLKNLCVTAA 740 (837)
Q Consensus 704 ~~~l~~~~~--~d~dl~~LA~~t~G~sg~DL~~L~~~Aa 740 (837)
+..+...++ ++..+..|+..+.| +.+++.+.+...+
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 999988886 77778888887765 4455555444433
No 171
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.86 E-value=9.9e-06 Score=85.67 Aligned_cols=27 Identities=48% Similarity=0.615 Sum_probs=24.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGA 585 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~ 585 (837)
.++++|+||||||||++|++||+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999998654
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.00015 Score=79.13 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=55.5
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
+|-||+|||++. +. .+..+.|...|+..+.+..+|-+ +++...+.+.|..|+ ..+++++|+.++...+|+.
T Consensus 134 ~~~vlilDE~~~-L~--~~~~~~L~~~le~~~~~~~~Il~-----t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~ 204 (354)
T 1sxj_E 134 RYKCVIINEANS-LT--KDAQAALRRTMEKYSKNIRLIMV-----CDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSD 204 (354)
T ss_dssp CCEEEEEECTTS-SC--HHHHHHHHHHHHHSTTTEEEEEE-----ESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHH
T ss_pred CCeEEEEeCccc-cC--HHHHHHHHHHHHhhcCCCEEEEE-----eCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHH
Confidence 677999999999 53 34455566677776666665554 334556889999999 5999999999999999987
Q ss_pred HH
Q 003231 347 KL 348 (837)
Q Consensus 347 ~l 348 (837)
.+
T Consensus 205 ~~ 206 (354)
T 1sxj_E 205 VV 206 (354)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 173
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.77 E-value=0.0004 Score=75.74 Aligned_cols=131 Identities=8% Similarity=0.089 Sum_probs=79.5
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhc------------------cCCEEEEecccccCCCCCCchhHHHHccCCc
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKL------------------SGSVLVLGSRMLEPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l------------------~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~ 328 (837)
.+.|+||||+|.+.....+. +-..++.. ...+.++|+ +++...++..+.+||..
T Consensus 102 ~~~v~~iDE~~~l~~~~~e~---L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a-----t~~~~~Ls~~l~sR~~l 173 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKAVEEL---LYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA-----TTRSGLLSSPLRSRFGI 173 (334)
T ss_dssp TTCEEEEETGGGCCHHHHHH---HHHHHHTSCCCC---------------CCCEEEEE-----ESCGGGSCHHHHTTCSE
T ss_pred CCCEEEEcchhhcCHHHHHH---HHHHHHhcccceeeccCcccccccccCCCeEEEEe-----cCCcccCCHHHHHhcCc
Confidence 45799999999854422222 22223221 013566665 44567889999999987
Q ss_pred eeeeCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcC
Q 003231 329 NLEVKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDN 408 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~ 408 (837)
.+.+.+|+.++...|++..... ..+... .-.+..|...+.. +.-.+..+++.+..++...+
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~-----------~~~~~~ia~~~~G----~~R~a~~ll~~~~~~a~~~~ 234 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASL----MDVEIE-----------DAAAEMIAKRSRG----TPRIAIRLTKRVRDMLTVVK 234 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHH----TTCCBC-----------HHHHHHHHHTSTT----CHHHHHHHHHHHHHHHHHHT
T ss_pred eeeCCCCCHHHHHHHHHHHHHH----cCCCcC-----------HHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999864321 111100 1123444555544 23455566666666665432
Q ss_pred CCccccCCceeecHHhHHHHHHHh
Q 003231 409 EDPEYRNGKLVISSKSLSHGLSIF 432 (837)
Q Consensus 409 ~~~~~~~~~~~i~~~~~~~~l~~~ 432 (837)
. -.|+.+.++.++..+
T Consensus 235 ~--------~~It~~~v~~al~~~ 250 (334)
T 1in4_A 235 A--------DRINTDIVLKTMEVL 250 (334)
T ss_dssp C--------SSBCHHHHHHHHHHH
T ss_pred C--------CCcCHHHHHHHHHHh
Confidence 2 137888999998854
No 174
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.76 E-value=4e-05 Score=76.27 Aligned_cols=28 Identities=43% Similarity=0.680 Sum_probs=24.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFI 588 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i 588 (837)
.+.|.||+|+|||||++.++..+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998875543
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.75 E-value=1.5e-05 Score=76.24 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=32.8
Q ss_pred CCCCCceEeecChhHHHHHHHHHHhhhh---CCeEEEeeccccc
Q 003231 106 SPASRTILLSGPAELYQQMLAKALAHFF---ESKLLLLDVNDFS 146 (837)
Q Consensus 106 ~~~~~~ILL~gP~e~yq~~LakALA~~~---~a~ll~ld~~~~~ 146 (837)
.....-|||+||++.++++||||++++. +.+++ ++...+.
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 3455679999999999999999999987 67777 7776553
No 176
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.63 E-value=0.00012 Score=62.55 Aligned_cols=74 Identities=8% Similarity=0.131 Sum_probs=61.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCcc
Q 003231 333 KLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPE 412 (837)
Q Consensus 333 ~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~ 412 (837)
++|+.++|.+||+.++.+ .....+++...|+..|.+ |||++|..++..|+.+++.+..
T Consensus 1 plPd~~~R~~Il~~~l~~----------------~~~~~~~dl~~la~~t~G---~SGADi~~l~~eA~~~a~~~~~--- 58 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK----------------MNLTRGINLRKIAELMPG---ASGAEVKGVCTEAGMYALRERR--- 58 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT----------------SEECTTCCHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHTTC---
T ss_pred CcCCHHHHHHHHHHHhcC----------------CCCCCccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhCC---
Confidence 589999999999987532 112357889999999999 9999999999999999987643
Q ss_pred ccCCceeecHHhHHHHHHHhh
Q 003231 413 YRNGKLVISSKSLSHGLSIFQ 433 (837)
Q Consensus 413 ~~~~~~~i~~~~~~~~l~~~~ 433 (837)
..|+.+||+.|+..+.
T Consensus 59 -----~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 59 -----VHVTQEDFEMAVAKVM 74 (78)
T ss_dssp -----SEECHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHH
Confidence 3599999999998543
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.63 E-value=0.00029 Score=76.80 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=57.3
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
..-|++|||+|.+ . .++.|.|-+.|+.-+.++++|.. +++...+.+.|..|.+ .|++.+|++++..++++.
T Consensus 108 ~~kvviIdead~l-~--~~a~naLLk~lEep~~~~~~Il~-----t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~ 178 (334)
T 1a5t_A 108 GAKVVWVTDAALL-T--DAAANALLKTLEEPPAETWFFLA-----TREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSR 178 (334)
T ss_dssp SCEEEEESCGGGB-C--HHHHHHHHHHHTSCCTTEEEEEE-----ESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHH
T ss_pred CcEEEEECchhhc-C--HHHHHHHHHHhcCCCCCeEEEEE-----eCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHH
Confidence 4789999999994 2 34566677788887777887766 3445678999999996 999999999999988876
Q ss_pred H
Q 003231 347 K 347 (837)
Q Consensus 347 ~ 347 (837)
+
T Consensus 179 ~ 179 (334)
T 1a5t_A 179 E 179 (334)
T ss_dssp H
T ss_pred h
Confidence 3
No 178
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.58 E-value=8.3e-05 Score=87.64 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=25.4
Q ss_pred ceEeecChhHHHHHHHHHHhhhhCCeEE
Q 003231 111 TILLSGPAELYQQMLAKALAHFFESKLL 138 (837)
Q Consensus 111 ~ILL~gP~e~yq~~LakALA~~~~a~ll 138 (837)
.|||.||++.++++||||+|+.++....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~ 356 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVY 356 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCcee
Confidence 7999999999999999999999976643
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=0.00061 Score=74.17 Aligned_cols=72 Identities=8% Similarity=0.057 Sum_probs=55.9
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKA 346 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~ 346 (837)
++-|++|||+|.+ . .+..+.|...++..+....+|.. ++....+.++|..|++ .+.+.+|+.++..++++.
T Consensus 110 ~~~viiiDe~~~l-~--~~~~~~L~~~le~~~~~~~~il~-----~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~ 180 (340)
T 1sxj_C 110 GFKLIILDEADAM-T--NAAQNALRRVIERYTKNTRFCVL-----ANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIAN 180 (340)
T ss_dssp SCEEEEETTGGGS-C--HHHHHHHHHHHHHTTTTEEEEEE-----ESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHH
T ss_pred CceEEEEeCCCCC-C--HHHHHHHHHHHhcCCCCeEEEEE-----ecCccccchhHHhhce-eEeccCCCHHHHHHHHHH
Confidence 4789999999984 2 24455577778888888877765 3456678999999997 999999999888877775
Q ss_pred H
Q 003231 347 K 347 (837)
Q Consensus 347 ~ 347 (837)
.
T Consensus 181 ~ 181 (340)
T 1sxj_C 181 V 181 (340)
T ss_dssp H
T ss_pred H
Confidence 4
No 180
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.53 E-value=0.00031 Score=77.42 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=52.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-------------cc---cccHHHHHHHHHHHH
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK-------------WF---GEDEKNVRALFTLAA 615 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~-------------~~---G~~e~~l~~lf~~A~ 615 (837)
++.+..-++|+||||+|||+|+..+|..+ +..+++++....... ++ ...+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45566789999999999999999998775 667778887653221 00 111222222222333
Q ss_pred hcCCeEEEecccccccC
Q 003231 616 KVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~ 632 (837)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999998875
No 181
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.52 E-value=0.00017 Score=63.16 Aligned_cols=76 Identities=8% Similarity=0.131 Sum_probs=62.4
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCc
Q 003231 332 VKLPEDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDP 411 (837)
Q Consensus 332 I~~P~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~ 411 (837)
-.+|+.++|.+||+.++.+ +....+++...|+..|.+ |||++|..++..|+-.++.+..
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~----------------~~l~~dvdl~~LA~~T~G---~SGADL~~l~~eAa~~alr~~~-- 66 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRK----------------MNLTRGINLRKIAELMPG---ASGAEVKGVCTEAGMYALRERR-- 66 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTT----------------SEECTTCCCHHHHHTCSS---CCHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCcCHHHHHHHHHHHHcC----------------CCCCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHcC--
Confidence 4689999999999997532 112357889999999999 9999999999999999987553
Q ss_pred cccCCceeecHHhHHHHHHHhhh
Q 003231 412 EYRNGKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 412 ~~~~~~~~i~~~~~~~~l~~~~~ 434 (837)
..|+.+||+.|+..+++
T Consensus 67 ------~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 67 ------VHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp ------SEECHHHHHHHHHHHHC
T ss_pred ------CCCCHHHHHHHHHHHcc
Confidence 45999999999986654
No 182
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.50 E-value=0.00029 Score=81.14 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=47.3
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHh-----------ccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCC
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKK-----------LSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPE 336 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~-----------l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~ 336 (837)
+.|||||||+. + ..+..+.|-..++. ++.+++|++++...+ .....+++.+||..+|.|+.|+
T Consensus 110 ~~IL~IDEI~r-~--~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe---~~~~~~aLldRF~~~i~v~~p~ 183 (500)
T 3nbx_X 110 AEIVFLDEIWK-A--GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPE---ADSSLEALYDRMLIRLWLDKVQ 183 (500)
T ss_dssp CSEEEEESGGG-C--CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCC---TTCTTHHHHTTCCEEEECCSCC
T ss_pred ceeeeHHhHhh-h--cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCC---ccccHHHHHHHHHHHHHHHHhh
Confidence 56999999987 2 34444445555542 222343443322111 1224579999999899999999
Q ss_pred h-HHHHHHHHHH
Q 003231 337 D-ETHLVNWKAK 347 (837)
Q Consensus 337 ~-e~rl~Ilk~~ 347 (837)
+ +++..|++.+
T Consensus 184 ~~ee~~~IL~~~ 195 (500)
T 3nbx_X 184 DKANFRSMLTSQ 195 (500)
T ss_dssp CHHHHHHHHTCC
T ss_pred hhhhHHHHHhcc
Confidence 8 7788998864
No 183
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.45 E-value=0.00033 Score=70.91 Aligned_cols=37 Identities=32% Similarity=0.437 Sum_probs=29.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 003231 556 LKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSM 592 (837)
Q Consensus 556 ~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~ 592 (837)
+.+...++|.||+|+|||+|++.+|..+ +..++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4556679999999999999999999654 556655554
No 184
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.45 E-value=5.3e-05 Score=81.74 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=34.8
Q ss_pred CCCCceEeecChhHHHHHHHHHHhhhh---CCeEEEeeccccch
Q 003231 107 PASRTILLSGPAELYQQMLAKALAHFF---ESKLLLLDVNDFSL 147 (837)
Q Consensus 107 ~~~~~ILL~gP~e~yq~~LakALA~~~---~a~ll~ld~~~~~~ 147 (837)
.....|||+||++.++++||||+++.. +.+++.++...+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~ 66 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE 66 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh
Confidence 456789999999999999999999965 67888888877653
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.41 E-value=0.00067 Score=75.11 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=52.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----cc------------ccHHHHHHHHHHHH
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW----FG------------EDEKNVRALFTLAA 615 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~----~G------------~~e~~l~~lf~~A~ 615 (837)
++.+...++|+||||+|||+||..+|..+ +.+++.++...-.... .| ..+..+..+-...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 44566789999999999999999998765 6788888876432211 11 11222222222233
Q ss_pred hcCCeEEEecccccccC
Q 003231 616 KVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~ 632 (837)
...+.+|+||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45689999999999875
No 186
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.41 E-value=0.00055 Score=68.91 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=33.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMST 594 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~ 594 (837)
++.+..-++|+||||+|||++++.+|...+.+.+.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566778999999999999999999986677888887654
No 187
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.39 E-value=0.00048 Score=80.60 Aligned_cols=170 Identities=13% Similarity=0.126 Sum_probs=93.9
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CC--cEEEEeccccc-
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA-----GA--SFINVSMSTIT- 596 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el-----g~--~~i~v~~s~l~- 596 (837)
..++|.+...+.|.+.+... . ...+-++|+||+|+|||+||+.++... .+ ..+.++.+...
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~----~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL----K-------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS----T-------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CeecccHHHHHHHHHHHhcc----c-------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 45899999999998887531 0 234679999999999999999997432 11 23333332210
Q ss_pred ----ccc------cc----------ccHHHHHHHHH-HHHh-cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhh
Q 003231 597 ----SKW------FG----------EDEKNVRALFT-LAAK-VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHW 654 (837)
Q Consensus 597 ----s~~------~G----------~~e~~l~~lf~-~A~~-~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~l 654 (837)
... .+ .....+...+. .... ..+.+|+|||++.. . .+..
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--------------~----~l~~- 253 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--------------W----VLKA- 253 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--------------H----HHHT-
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--------------H----HHHH-
Confidence 000 00 11111222222 2222 25799999999742 1 1111
Q ss_pred ccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhc---CCCCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHH
Q 003231 655 DGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMV---GLPSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGS 730 (837)
Q Consensus 655 d~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~---~~P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~ 730 (837)
+ +.+..||.||........ .. ...+.+ +..+.++-.+++...+..... .......|++.+.|+. -
T Consensus 254 --l----~~~~~ilvTsR~~~~~~~-~~---~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P-L 322 (591)
T 1z6t_A 254 --F----DSQCQILLTTRDKSVTDS-VM---GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP-L 322 (591)
T ss_dssp --T----CSSCEEEEEESCGGGGTT-CC---SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH-H
T ss_pred --h----cCCCeEEEECCCcHHHHh-cC---CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc-H
Confidence 1 123466677765431110 00 122233 357888888888877653211 2445778999998864 3
Q ss_pred HHHHH
Q 003231 731 DLKNL 735 (837)
Q Consensus 731 DL~~L 735 (837)
-|..+
T Consensus 323 al~~~ 327 (591)
T 1z6t_A 323 VVSLI 327 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 188
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.36 E-value=0.00059 Score=69.83 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=51.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHH--h-------CCcEEEEeccccccc--------cccc---------------
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANE--A-------GASFINVSMSTITSK--------WFGE--------------- 602 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~e--l-------g~~~i~v~~s~l~s~--------~~G~--------------- 602 (837)
++.+...++|+||||+|||+|++.+|.. + +...+.++....... .+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4456678999999999999999999985 3 456777776552100 0110
Q ss_pred cHH----HHHHHHHHHHhcCCeEEEecccccccCC
Q 003231 603 DEK----NVRALFTLAAKVSPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 603 ~e~----~l~~lf~~A~~~~psVLfIDEID~L~~~ 633 (837)
... .+..+...+....|.+|+||++..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 111 1222334444567899999999988653
No 189
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.35 E-value=0.00026 Score=78.70 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=59.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCeEEEecccccccC-CC
Q 003231 556 LKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLG-QR 634 (837)
Q Consensus 556 ~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l~s~~~G~~e~~l~~lf~~A~~~~psVLfIDEID~L~~-~r 634 (837)
+.+...++|+||||+|||+++++++...+..++.+....- . . -|......+..++|+||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~--------~--~~~lg~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R--------L--NFELGVAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T--------H--HHHHGGGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h--------H--HHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 3566789999999999999999999998877665433220 0 0 01111222446789999998865 22
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCC
Q 003231 635 TRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDL 677 (837)
Q Consensus 635 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~L 677 (837)
.-....... ....+...+++. +.|+++||+++.+
T Consensus 234 ~l~~~~~~~--~~~~l~~~ldG~-------v~v~~~tn~~~~l 267 (377)
T 1svm_A 234 DLPSGQGIN--NLDNLRDYLDGS-------VKVNLEKKHLNKR 267 (377)
T ss_dssp TCCCCSHHH--HHHTTHHHHHCS-------SCEEECCSSSCCE
T ss_pred hccccCcch--HHHHHHHHhcCC-------CeEeeccCchhhH
Confidence 111111110 122333444442 4567778777766
No 190
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.31 E-value=0.00043 Score=76.19 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=51.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----ccc------------ccHHHHHHHHHHHH
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK----WFG------------EDEKNVRALFTLAA 615 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~----~~G------------~~e~~l~~lf~~A~ 615 (837)
++.+..-++|+||||+|||+||..+|..+ +..++.++...-... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 44567789999999999999999998665 667777776542211 111 11222222222334
Q ss_pred hcCCeEEEecccccccC
Q 003231 616 KVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~ 632 (837)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 191
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.28 E-value=0.0016 Score=72.02 Aligned_cols=93 Identities=10% Similarity=0.085 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEccchhHhhh---cHHHHHHHHHHHHhcc-----CCEEEEecccccCCCCCCchh---H
Q 003231 252 FLQSLYKVLVSITETSSVILYLRDVDKLLFQ---SQRFYNLLDKLLKKLS-----GSVLVLGSRMLEPEDDCRDVD---E 320 (837)
Q Consensus 252 ~~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~---~~~~~~~lk~~l~~l~-----g~v~iiGs~~~~~~~~~~~~d---~ 320 (837)
+++.|.+.+.. ...|+||+|||+|.+... ..+....+-..+..+. .++.+|+++..... ...++ .
T Consensus 125 ~~~~l~~~l~~--~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~--~~~l~~~~~ 200 (412)
T 1w5s_A 125 ILKALVDNLYV--ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRA--LSYMREKIP 200 (412)
T ss_dssp HHHHHHHHHHH--HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHH--HHHHHHHCH
T ss_pred HHHHHHHHHHh--cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccH--HHHHhhhcc
Confidence 55666666652 357999999999996542 3454443434555544 57777765321100 11234 5
Q ss_pred HHHccCCceeeeCCCChHHHHHHHHHHH
Q 003231 321 RLTILFPYNLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 321 al~rrF~~~IeI~~P~~e~rl~Ilk~~l 348 (837)
.+.++|...|.+++++.++...+++..+
T Consensus 201 ~~~~~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 201 QVESQIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence 6667777679999999999999998654
No 192
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.26 E-value=0.00044 Score=78.79 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=39.5
Q ss_pred cccccc-cchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEec
Q 003231 523 TFADIG-ALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---GA-SFINVSM 592 (837)
Q Consensus 523 ~fddIi-G~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g~-~~i~v~~ 592 (837)
+|+++- +|..+...+...+.. ....++|.||||||||+++.+++..+ +. .++.+..
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred ccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 777775 566666666555543 12389999999999999999999877 43 4444443
No 193
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=0.0017 Score=70.12 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=56.3
Q ss_pred cEEEEEccchhHhhhcHHHHHHHHHHHHhccCCEEEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHHHH
Q 003231 268 SVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSVLVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWKAK 347 (837)
Q Consensus 268 p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk~~ 347 (837)
.-|++|||+|.+ +..+.|.|-+.|+.-++++++|..+ +++..+.+.|..| .+++.+|++++-.+.++..
T Consensus 83 ~kvviIdead~l---t~~a~naLLk~LEep~~~t~fIl~t-----~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 83 RKYVIVHDCERM---TQQAANAFLKALEEPPEYAVIVLNT-----RRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp SEEEEETTGGGB---CHHHHHHTHHHHHSCCTTEEEEEEE-----SCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHH
T ss_pred ceEEEeccHHHh---CHHHHHHHHHHHhCCCCCeEEEEEE-----CChHhChHHHHce---eEeCCCCCHHHHHHHHHHH
Confidence 369999999994 2345677888999988888877764 3456788999988 8999999999999988865
Q ss_pred H
Q 003231 348 L 348 (837)
Q Consensus 348 l 348 (837)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 3
No 194
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.24 E-value=0.00045 Score=67.42 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
..|+|.||||+||||+++.++..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4689999999999999999999999998876654
No 195
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.19 E-value=0.00073 Score=88.40 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=72.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----cc--------ccHHHHHHHHHHHHh---
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW----FG--------EDEKNVRALFTLAAK--- 616 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~----~G--------~~e~~l~~lf~~A~~--- 616 (837)
++.+...++|.|+||+|||+||..+|..+ +.++++++..+..... +| ..+..+..++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 67788899999999999999999999877 5579999887655443 22 112224444554443
Q ss_pred -cCCeEEEecccccccC-C----CCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEec
Q 003231 617 -VSPTIIFVDEVDSMLG-Q----RTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAAT 671 (837)
Q Consensus 617 -~~psVLfIDEID~L~~-~----r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTT 671 (837)
..|++||||.+..+.. . +.....+....+.+..++..+..+....+ +.||++.
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~--v~VI~l~ 866 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLIFIN 866 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT--CEEEEEE
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhC--CEEEEec
Confidence 6789999999999875 2 11111111222334555555555544444 4444443
No 196
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.19 E-value=0.00088 Score=72.74 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=52.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccc-cc-------cccc---------------
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---------GASFINVSMSTIT-SK-------WFGE--------------- 602 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---------g~~~i~v~~s~l~-s~-------~~G~--------------- 602 (837)
++.+..-++|+||||+|||++|..+|... +.+.++++...-. .. .+|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 44566789999999999999999999875 5677888776521 00 0110
Q ss_pred -cH---HHHHHHHHHHHh-cCCeEEEecccccccC
Q 003231 603 -DE---KNVRALFTLAAK-VSPTIIFVDEVDSMLG 632 (837)
Q Consensus 603 -~e---~~l~~lf~~A~~-~~psVLfIDEID~L~~ 632 (837)
.+ ..+..+...... ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11 122333344445 6789999999998864
No 197
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.17 E-value=0.00084 Score=74.05 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=52.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----cc-----------ccHHHHHHHHH-HHH
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSKW----FG-----------EDEKNVRALFT-LAA 615 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~~----~G-----------~~e~~l~~lf~-~A~ 615 (837)
++.+...++|+||||+|||+||..+|..+ |.+++.++...-.... .| .....+..++. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 34566789999999999999999998765 6788888875422110 11 01122233333 233
Q ss_pred hcCCeEEEecccccccC
Q 003231 616 KVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 616 ~~~psVLfIDEID~L~~ 632 (837)
...+.+|+||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999874
No 198
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.13 E-value=0.0018 Score=69.99 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccc----cccc-----------cHHHH-HHHHHH
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA-----GASFINVSMSTITSK----WFGE-----------DEKNV-RALFTL 613 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v~~s~l~s~----~~G~-----------~e~~l-~~lf~~ 613 (837)
++.+. .++|+||||+|||+|+..++..+ +..+++++...-... .+|- ....+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 44444 68999999999999998887654 667888887653221 0110 11111 122222
Q ss_pred ---HHhcCCeEEEecccccccC
Q 003231 614 ---AAKVSPTIIFVDEVDSMLG 632 (837)
Q Consensus 614 ---A~~~~psVLfIDEID~L~~ 632 (837)
.+...|.+|+||-|..|.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2455799999999999975
No 199
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.11 E-value=0.00025 Score=69.83 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=29.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
...|+|.||||||||++++.+|..+|++++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999999987543
No 200
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.10 E-value=0.0014 Score=71.91 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=51.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccccc--------cccc---------------
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---------GASFINVSMSTITSK--------WFGE--------------- 602 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---------g~~~i~v~~s~l~s~--------~~G~--------------- 602 (837)
++.+..-++|+||||+|||++|..+|... +...++++....... .+|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45666779999999999999999999863 567788877652110 0110
Q ss_pred -cH---HHHHHHHHHHHh--cCCeEEEecccccccC
Q 003231 603 -DE---KNVRALFTLAAK--VSPTIIFVDEVDSMLG 632 (837)
Q Consensus 603 -~e---~~l~~lf~~A~~--~~psVLfIDEID~L~~ 632 (837)
.+ ..+..+...+.. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 11 112223344444 6789999999998874
No 201
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.09 E-value=0.00021 Score=71.37 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=23.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA---GASFINV 590 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el---g~~~i~v 590 (837)
.-++++||+|+|||+++..++..+ |..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999997776654 5555544
No 202
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.07 E-value=0.0038 Score=64.34 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA---GASFINVSM 592 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~ 592 (837)
..+++.|+||||||+++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998776 777665554
No 203
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.01 E-value=0.002 Score=72.15 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=50.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccccc--------cccc---------------
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---------GASFINVSMSTITSK--------WFGE--------------- 602 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---------g~~~i~v~~s~l~s~--------~~G~--------------- 602 (837)
++.+..-++|+||||+|||+|++.+|... +...++++..+.... .+|.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 45667789999999999999999877443 244777776542110 0110
Q ss_pred -c---HHHHHHHHHHHHhcCCeEEEecccccccCC
Q 003231 603 -D---EKNVRALFTLAAKVSPTIIFVDEVDSMLGQ 633 (837)
Q Consensus 603 -~---e~~l~~lf~~A~~~~psVLfIDEID~L~~~ 633 (837)
. ...+..+...+....|.+|+||++-.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0 112223333444567899999999988753
No 204
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.00036 Score=69.94 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=30.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
.+...++|.||||+||||+++.+|..+|.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 35568999999999999999999999999987543
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.00 E-value=0.0017 Score=65.79 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=30.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---------GASFINVSMST 594 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---------g~~~i~v~~s~ 594 (837)
++.+..-+.|.||+|+|||+|++.++... +...+.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 44566779999999999999999999854 23366666543
No 206
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.99 E-value=0.0072 Score=76.28 Aligned_cols=170 Identities=12% Similarity=0.091 Sum_probs=96.3
Q ss_pred cccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C----CcEEEEecccccc
Q 003231 525 ADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEA---G----ASFINVSMSTITS 597 (837)
Q Consensus 525 ddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~el---g----~~~i~v~~s~l~s 597 (837)
..++|.++.++.|.+.+... . ...+-+.|+|+.|+|||+||+.++... . ..++.++.+....
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~---~--------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL---N--------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT---T--------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred ceeccHHHHHHHHHHHHhhc---c--------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 35899999999999888531 0 234568899999999999999998652 1 2233444333100
Q ss_pred c---------------------cccccHHHHHHHHHHHHh--cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhh
Q 003231 598 K---------------------WFGEDEKNVRALFTLAAK--VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHW 654 (837)
Q Consensus 598 ~---------------------~~G~~e~~l~~lf~~A~~--~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~l 654 (837)
. ........+...+..... .++.+|+||+++... .+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------------------~~ 251 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------------------VL 251 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------HH
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------HH
Confidence 0 001112222222332222 237899999998430 11
Q ss_pred ccccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHhhcCC-ChhhHHHHHHHcCCCCHHHH
Q 003231 655 DGLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGL-PSAENREMILKTLLAKEKV-EDLDFKELAAMTEGYSGSDL 732 (837)
Q Consensus 655 d~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~-P~~eer~~IL~~~l~~~~~-~d~dl~~LA~~t~G~sg~DL 732 (837)
..+ +....||.||..+...... ......+.++. ++.++-.+++......... ......+|++.+.|.. -.|
T Consensus 252 ~~~----~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal 324 (1249)
T 3sfz_A 252 KAF----DNQCQILLTTRDKSVTDSV--MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP-LVV 324 (1249)
T ss_dssp TTT----CSSCEEEEEESSTTTTTTC--CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH-HHH
T ss_pred Hhh----cCCCEEEEEcCCHHHHHhh--cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH-HHH
Confidence 111 1224677777765322100 00123456664 7888888888876643322 2345678889888764 344
Q ss_pred H
Q 003231 733 K 733 (837)
Q Consensus 733 ~ 733 (837)
+
T Consensus 325 ~ 325 (1249)
T 3sfz_A 325 S 325 (1249)
T ss_dssp H
T ss_pred H
Confidence 4
No 207
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.93 E-value=0.00051 Score=67.78 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
..+.-|+|.|+||+||||+++.++..++.+++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3456799999999999999999999999887653
No 208
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.90 E-value=0.0034 Score=64.33 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=28.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHH--HH--hCCcEEEEec
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIA--NE--AGASFINVSM 592 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA--~e--lg~~~i~v~~ 592 (837)
++.+..-+.|.||+|+|||||++.++ .. .+...+.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 34566789999999999999999998 33 2444444443
No 209
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.86 E-value=0.0018 Score=71.32 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec-ccccc---------ccccccHHHHHHHHHHHHhcCCeEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSM-STITS---------KWFGEDEKNVRALFTLAAKVSPTIIF 623 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~-s~l~s---------~~~G~~e~~l~~lf~~A~~~~psVLf 623 (837)
+...+++.||+|+||||+.++++..+ +..++.+.- .++.. ..++.........+..+-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 44579999999999999999998876 334443321 11111 01121112344567777788999999
Q ss_pred ecccc
Q 003231 624 VDEVD 628 (837)
Q Consensus 624 IDEID 628 (837)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99994
No 210
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.84 E-value=0.0055 Score=62.57 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
++.+...++|.||||+|||+++..+|... +.+.+.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 44566789999999999999999887654 5666666553
No 211
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.83 E-value=0.00067 Score=65.48 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
-|+|.||||+||||+++.++..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999999887554
No 212
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.83 E-value=0.013 Score=63.08 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=46.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-------c------------c-cccHHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK-------W------------F-GEDEKNVRALFTL 613 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~-------~------------~-G~~e~~l~~lf~~ 613 (837)
.++..++|.||+|+||||++..+|..+ +..+..+++..+... | . +.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456779999999999999999999876 555555554322110 0 0 1111122233445
Q ss_pred HHhcCCeEEEeccccc
Q 003231 614 AAKVSPTIIFVDEVDS 629 (837)
Q Consensus 614 A~~~~psVLfIDEID~ 629 (837)
+....+.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5566789999998854
No 213
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.82 E-value=0.0025 Score=65.62 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc-------ccccccccc-----HHHHHHHHHHHHh----cC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMST-------ITSKWFGED-----EKNVRALFTLAAK----VS 618 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~-------l~s~~~G~~-----e~~l~~lf~~A~~----~~ 618 (837)
+..-++++||+|+|||+++..++..+ |..++.+.... +.+. .|-. ......++..+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 34568889999999999999988776 55666653221 1111 1110 0112345555544 34
Q ss_pred CeEEEecccccc
Q 003231 619 PTIIFVDEVDSM 630 (837)
Q Consensus 619 psVLfIDEID~L 630 (837)
+.+|+|||+..+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999875
No 214
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.80 E-value=0.00073 Score=66.26 Aligned_cols=33 Identities=48% Similarity=0.768 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
....|+|+|+||+|||++++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345799999999999999999999999888754
No 215
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.76 E-value=0.0036 Score=72.84 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=89.8
Q ss_pred ccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH----HhCCcE---EEEeccccc----
Q 003231 528 GALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN----EAGASF---INVSMSTIT---- 596 (837)
Q Consensus 528 iG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~----elg~~~---i~v~~s~l~---- 596 (837)
+|.+..++.|.+++... . ....+.+.|+|++|+|||+||+.+++ .....| +.++.+.-.
T Consensus 131 ~GR~~~~~~l~~~L~~~-~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-C---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-T---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc-c---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 59999999998888531 0 02346789999999999999999997 332222 223433311
Q ss_pred ----cc---cccc-------------cHHHHHHHHHHHHhcC-CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhc
Q 003231 597 ----SK---WFGE-------------DEKNVRALFTLAAKVS-PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWD 655 (837)
Q Consensus 597 ----s~---~~G~-------------~e~~l~~lf~~A~~~~-psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld 655 (837)
.. .++. ....+...+...-... +.+|+||+++... .+ .+ .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~-------------~~--~~----~ 261 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE-------------TI--RW----A 261 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH-------------HH--HH----H
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch-------------hh--cc----c
Confidence 00 0010 1112223333333343 7899999998531 11 11 1
Q ss_pred cccccCCceEEEEEecCCCCCCcHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhcCC-C--hhhHHHHHHHcCCCC
Q 003231 656 GLLTRNGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKV-E--DLDFKELAAMTEGYS 728 (837)
Q Consensus 656 ~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~~~I~~~~P~~eer~~IL~~~l~~~~~-~--d~dl~~LA~~t~G~s 728 (837)
.. .+ ..||.||........ . ......+.++..+.++-.+++......... . ......+++.+.|..
T Consensus 262 ~~---~g--s~ilvTTR~~~v~~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 262 QE---LR--LRCLVTTRDVEISNA-A-SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp HH---TT--CEEEEEESBGGGGGG-C-CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred cc---CC--CEEEEEcCCHHHHHH-c-CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 11 22 366777765321110 0 001134677888888888888776432221 1 113456777777653
No 216
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.74 E-value=0.00069 Score=66.21 Aligned_cols=29 Identities=34% Similarity=0.659 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
.++|.||||+|||++++.||..++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988875
No 217
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.72 E-value=0.003 Score=65.84 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=32.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI 595 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l 595 (837)
..+..++|.||||+||||+|+.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345679999999999999999999999866666776654
No 218
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.72 E-value=0.00077 Score=66.28 Aligned_cols=31 Identities=26% Similarity=0.640 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
.|+|.|+||+|||++|+.||..+|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999887543
No 219
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.72 E-value=0.00081 Score=65.15 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
...++|.|+|||||||+++.||..+|++++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35799999999999999999999999998754
No 220
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.69 E-value=0.0026 Score=68.67 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=50.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---------------C----CcEEEEeccccc-cc-------cccc-----
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---------------G----ASFINVSMSTIT-SK-------WFGE----- 602 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---------------g----~~~i~v~~s~l~-s~-------~~G~----- 602 (837)
++.+..-++|+||||+|||++|..+|... | .++++++...-. .. .+|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34566779999999999999999999753 3 567777766531 00 0010
Q ss_pred ----------c-H---HHHHHHHHHHHh-cCCeEEEecccccccC
Q 003231 603 ----------D-E---KNVRALFTLAAK-VSPTIIFVDEVDSMLG 632 (837)
Q Consensus 603 ----------~-e---~~l~~lf~~A~~-~~psVLfIDEID~L~~ 632 (837)
. + ..+..+...... ..+.+|+||.+..+..
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 1 1 112223334444 5678999999998864
No 221
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.69 E-value=0.0044 Score=68.07 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=31.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---------GASFINVSMST 594 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---------g~~~i~v~~s~ 594 (837)
++.+..-+.|+||||+|||+|++.+|... +...++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 34566779999999999999999999876 24567777654
No 222
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.68 E-value=0.00088 Score=66.28 Aligned_cols=33 Identities=45% Similarity=0.666 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH-hCCcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANE-AGASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~e-lg~~~i~v~ 591 (837)
+..++|+|+||||||++++.+|.. +|++++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 456999999999999999999999 787776543
No 223
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.67 E-value=0.0012 Score=63.90 Aligned_cols=30 Identities=33% Similarity=0.728 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
..+.|.||+|+||||+++.+|..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999986653
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.64 E-value=0.015 Score=65.80 Aligned_cols=73 Identities=21% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-------------------cc-cccHHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK-------------------WF-GEDEKNVRALFTLA 614 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~-------------------~~-G~~e~~l~~lf~~A 614 (837)
++..+++.||+|+||||++..+|..+ |..+..+++..+... .. ......+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999999776 667766665432110 01 12233445667777
Q ss_pred HhcCCeEEEecccccc
Q 003231 615 AKVSPTIIFVDEVDSM 630 (837)
Q Consensus 615 ~~~~psVLfIDEID~L 630 (837)
....+.+|+||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999988654
No 225
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.63 E-value=0.0011 Score=65.47 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
++..|+|.|+||+||||+++.+|..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345799999999999999999999999887654
No 226
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.60 E-value=0.0045 Score=53.26 Aligned_cols=72 Identities=7% Similarity=0.116 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccC
Q 003231 336 EDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRN 415 (837)
Q Consensus 336 ~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~ 415 (837)
+.++|.+||+.++.+ .-...+++...|+..+.+ |||++|..++..|+..++.+..
T Consensus 2 d~~~R~~Il~~~l~~----------------~~~~~~vdl~~la~~t~G---~SGADi~~l~~eA~~~a~~~~~------ 56 (83)
T 3aji_B 2 DRRQKRLIFSTITSK----------------MNLSEEVDLEDYVARPDK---ISGADINSICQESGMLAVRENR------ 56 (83)
T ss_dssp CHHHHHHHHHHHHTT----------------SCBCTTCCTHHHHTSSCC---CCHHHHHHHHHHHHHGGGTSCC------
T ss_pred CHHHHHHHHHHHhCC----------------CCCCcccCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhcc------
Confidence 578999999987532 112356889999999999 9999999999999999987553
Q ss_pred CceeecHHhHHHHHHHhhh
Q 003231 416 GKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 416 ~~~~i~~~~~~~~l~~~~~ 434 (837)
..|+++||+.|+..+++
T Consensus 57 --~~i~~~df~~Al~~~~p 73 (83)
T 3aji_B 57 --YIVLAKDFEKAYKTVIK 73 (83)
T ss_dssp --SSBCHHHHHHHHHHHCC
T ss_pred --CCcCHHHHHHHHHHHcc
Confidence 34999999999996655
No 227
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.59 E-value=0.0012 Score=65.89 Aligned_cols=32 Identities=38% Similarity=0.620 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
+..|+|.|+||+||||+|+.|+..++++++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34699999999999999999999999887654
No 228
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.58 E-value=0.011 Score=60.45 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANE----AGASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~e----lg~~~i~v~~s 593 (837)
|+.+..-++|+|+||+|||++|..+|.. .+.+++.++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4567778999999999999999987644 26677776653
No 229
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.58 E-value=0.0043 Score=66.23 Aligned_cols=38 Identities=37% Similarity=0.482 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI 595 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l 595 (837)
.+.-++|.||||+||||+|+.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45679999999999999999999998545566665433
No 230
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.57 E-value=0.0012 Score=64.97 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
+.-|+|.|+||+||||+|+.++..++++++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3568999999999999999999999987754
No 231
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.56 E-value=0.0013 Score=64.85 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=32.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI 595 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l 595 (837)
.+...+.|.||||+||||+++.++...+...+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 455679999999999999999999987777777776543
No 232
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.56 E-value=0.0034 Score=65.80 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANE---AGASFINVSMSTI 595 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~e---lg~~~i~v~~s~l 595 (837)
+.-|+|.|+||+||||+|+.++.. .|.+++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 456999999999999999999998 6888886665544
No 233
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.56 E-value=0.0011 Score=63.74 Aligned_cols=29 Identities=45% Similarity=0.691 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
-|+|.||||+||||+|+.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887754
No 234
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.55 E-value=0.0045 Score=60.62 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=43.4
Q ss_pred ccccccccccccHHHHHHHHHHHHhhcccccccccccccC-CCCCceEeecChhHHHHHHHHHHhhhh----CCeEEEee
Q 003231 67 KTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLS-PASRTILLSGPAELYQQMLAKALAHFF----ESKLLLLD 141 (837)
Q Consensus 67 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~-~~~~~ILL~gP~e~yq~~LakALA~~~----~a~ll~ld 141 (837)
..||++|-.. ++..+.++..+ --.+ .++. ...+.|+|+||++.++++|+|++|+.. |.+.+.++
T Consensus 6 ~~~f~~~~~~-~~~~~~~~~~~-~~~~---------~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 6 NANLDTYHPK-NVSQNRALLTI-RVFV---------HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TCCSSSCCCC-SHHHHHHHHHH-HHHH---------HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hCccccccCC-CHHHHHHHHHH-HHHH---------HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4689998553 34444443322 2112 1222 236789999999999999999999877 55555555
Q ss_pred ccccc
Q 003231 142 VNDFS 146 (837)
Q Consensus 142 ~~~~~ 146 (837)
..++.
T Consensus 75 ~~~~~ 79 (180)
T 3ec2_A 75 TKDLI 79 (180)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 235
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.55 E-value=0.0017 Score=65.96 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
++..|+|.|+||+||||+|+.||..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 346799999999999999999999999877654
No 236
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.54 E-value=0.0012 Score=64.02 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
.|+|.|+||+|||++|+.++..+|++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999887653
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.53 E-value=0.0014 Score=68.69 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSM 592 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~ 592 (837)
-++|.||||+|||++|+.||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887664
No 238
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.52 E-value=0.0081 Score=69.84 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=50.6
Q ss_pred CeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC--CCcHHHHHHHHHhhhcCCCCH
Q 003231 619 PTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF--DLDEAIIRRFERRIMVGLPSA 696 (837)
Q Consensus 619 psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~--~Ld~aL~rRF~~~I~~~~P~~ 696 (837)
+-+|+|||+..++.... ......+..+.. .. ..-.+-+|.+|.+|. .++..++.-|..+|.+...+.
T Consensus 344 ~ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar---~G---Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~ 412 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----KKVEELIARIAQ---KA---RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----HHHHHHHHHHHH---HC---TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCH
T ss_pred cEEEEEeCHHHHhhhhh-----HHHHHHHHHHHH---HH---hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCH
Confidence 35899999998864211 111122222222 11 223488888888887 899999998888899999998
Q ss_pred HHHHHHHH
Q 003231 697 ENREMILK 704 (837)
Q Consensus 697 eer~~IL~ 704 (837)
.+...|+.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88888874
No 239
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.51 E-value=0.0042 Score=54.28 Aligned_cols=72 Identities=7% Similarity=0.121 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccC
Q 003231 336 EDETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRN 415 (837)
Q Consensus 336 ~~e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~ 415 (837)
+.++|.+||+.++.+ .....+++...|+..|.+ |||++|..++..|+-+++.+...
T Consensus 2 d~~~R~~Il~~~~~~----------------~~~~~dvdl~~lA~~t~G---~SGADl~~l~~eAa~~a~r~~~~----- 57 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS----------------MSVERGIRWELISRLCPN---STGAELRSVCTEAGMFAIRARRK----- 57 (88)
T ss_dssp CSSHHHHHHHHHHTT----------------SCBCSCCCHHHHHHTCSS---CCHHHHHHHHHHHHHHHHHHSCS-----
T ss_pred CHHHHHHHHHHHHCC----------------CCCCCccCHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhccc-----
Confidence 568999999987532 122357889999999999 99999999999999999876542
Q ss_pred CceeecHHhHHHHHHHhhh
Q 003231 416 GKLVISSKSLSHGLSIFQE 434 (837)
Q Consensus 416 ~~~~i~~~~~~~~l~~~~~ 434 (837)
.|+.+||+.|+..+..
T Consensus 58 ---~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 58 ---VATEKDFLKAVDKVIS 73 (88)
T ss_dssp ---SBCHHHHHHHHHHHTC
T ss_pred ---cCCHHHHHHHHHHHhc
Confidence 3899999999996654
No 240
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.51 E-value=0.0015 Score=64.21 Aligned_cols=31 Identities=32% Similarity=0.671 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
..++|.||||+||||+++.+|..+|.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4689999999999999999999999876543
No 241
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.48 E-value=0.013 Score=68.91 Aligned_cols=140 Identities=10% Similarity=0.066 Sum_probs=74.6
Q ss_pred CCcEEEEEccchhHhhhcHHHHHHHHHHHHh---------------------ccCCEEEEecccccCCCCCCchhHHHHc
Q 003231 266 TSSVILYLRDVDKLLFQSQRFYNLLDKLLKK---------------------LSGSVLVLGSRMLEPEDDCRDVDERLTI 324 (837)
Q Consensus 266 ~~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~---------------------l~g~v~iiGs~~~~~~~~~~~~d~al~r 324 (837)
..+-+|||||+|. + .....+.|...|+. ++-++++|++++.+. ...++++|.+
T Consensus 200 a~~gvL~LDEi~~-l--~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~---~~~l~~~l~~ 273 (604)
T 3k1j_A 200 AHKGVLFIDEIAT-L--SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT---VDKMHPALRS 273 (604)
T ss_dssp TTTSEEEETTGGG-S--CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH---HHHSCHHHHH
T ss_pred cCCCEEEEechhh-C--CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH---HhhcCHHHHH
Confidence 3667999999999 4 35566667777763 123556777644331 1358999999
Q ss_pred cCCc-eeeeCCCC-----hHHHHHHHHHHHHHHHHHh-hcccchhHHHHHhhcCCCChhHHhhcc---cCCCC---CChh
Q 003231 325 LFPY-NLEVKLPE-----DETHLVNWKAKLEEDMKVL-QFQDNKNHIAEVLAANDLECDDLGSIC---QADTM---VLSN 391 (837)
Q Consensus 325 rF~~-~IeI~~P~-----~e~rl~Ilk~~l~~d~~~~-~~~~n~~~i~~vl~~~~~~~~dL~~~~---~~d~~---l~~~ 391 (837)
||.. .+.|.+|+ .+....+++....+..+.. ...-..+.+. .|...+ -.|+. +..-
T Consensus 274 R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~-----------~Li~~~~r~~g~r~~l~~~~R 342 (604)
T 3k1j_A 274 RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVE-----------EIVREAQKRAGRKGHLTLRLR 342 (604)
T ss_dssp HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHH-----------HHHHHHHHTTCSTTEEECCHH
T ss_pred HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHH-----------HHHHHHhhhhccccccccCHH
Confidence 9951 14555543 2223333332111111100 0011111111 122212 23332 3456
Q ss_pred hHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHH
Q 003231 392 YIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLS 430 (837)
Q Consensus 392 ~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 430 (837)
++..+++.|..++-.... -.|+.+++..++.
T Consensus 343 ~l~~llr~A~~~A~~~~~--------~~I~~edv~~A~~ 373 (604)
T 3k1j_A 343 DLGGIVRAAGDIAVKKGK--------KYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHHHTTC--------SSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCc--------ccccHHHHHHHHH
Confidence 788888888776644332 2488899999986
No 242
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.48 E-value=0.027 Score=60.77 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=31.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
++.+..-++|.|+||+|||++|..+|... +.+++.++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 45677789999999999999999998665 5677777653
No 243
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.46 E-value=0.0014 Score=66.63 Aligned_cols=32 Identities=28% Similarity=0.555 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
...|+|.|+||+||||+|+.||..++++++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35699999999999999999999999887754
No 244
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.45 E-value=0.015 Score=65.71 Aligned_cols=73 Identities=22% Similarity=0.131 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------cc---c-ccHHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK----------------WF---G-EDEKNVRALFTLA 614 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~----------------~~---G-~~e~~l~~lf~~A 614 (837)
++.-+++.||+|+||||++..+|..+ |..+..+++..+... +. + .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999999776 666666664422110 00 1 1112233444555
Q ss_pred HhcCCeEEEecccccc
Q 003231 615 AKVSPTIIFVDEVDSM 630 (837)
Q Consensus 615 ~~~~psVLfIDEID~L 630 (837)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5557899999988654
No 245
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.45 E-value=0.0021 Score=65.99 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI 595 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l 595 (837)
+.++-|+|.||||+||+|.|+.||+.+|++.+ +..++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdl 63 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDL 63 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHH
Confidence 45677899999999999999999999988765 44444
No 246
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.45 E-value=0.0015 Score=66.77 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
.+..|+|.||||+||||+++.||..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 346799999999999999999999999877654
No 247
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.43 E-value=0.0016 Score=64.43 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
+.-|+|.|+||+||||+|+.++..++++++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35699999999999999999999999776643
No 248
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.42 E-value=0.0018 Score=75.87 Aligned_cols=33 Identities=39% Similarity=0.491 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA---GASFINVSM 592 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~ 592 (837)
..++|.||||||||+++++++..+ +.+++.+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 579999999999999999998765 666665544
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.41 E-value=0.0019 Score=64.55 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
+.-|+|.||+|+||||+|+.|+..+|..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45699999999999999999999999877653
No 250
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.39 E-value=0.0018 Score=63.61 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
+..|+|.|+||+||||+|+.++..++++++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35699999999999999999999999877654
No 251
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.39 E-value=0.0044 Score=65.24 Aligned_cols=72 Identities=25% Similarity=0.405 Sum_probs=44.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec--ccccc--------ccccccHHHHHHHHHHHHhcCCeEE
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG----ASFINVSM--STITS--------KWFGEDEKNVRALFTLAAKVSPTII 622 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg----~~~i~v~~--s~l~s--------~~~G~~e~~l~~lf~~A~~~~psVL 622 (837)
.+...++|.||+|+||||++++++..+. ..++.... ..+.. ..+|.....++..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 4566799999999999999999998652 22222211 11100 0111111234556666666789999
Q ss_pred Eecccc
Q 003231 623 FVDEVD 628 (837)
Q Consensus 623 fIDEID 628 (837)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 252
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.38 E-value=0.0017 Score=62.67 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
.|+|.|+||+|||++|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999888753
No 253
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.37 E-value=0.0016 Score=65.74 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
.|+|.||||+||||+|+.|+..+|++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999999887654
No 254
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.35 E-value=0.0017 Score=65.48 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
.|+|.||||+||||+|+.++..+|++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999887654
No 255
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.35 E-value=0.002 Score=64.28 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
+.-|+|.|+||+||||+++.+++.+|++++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 456899999999999999999999998776543
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.35 E-value=0.0018 Score=62.88 Aligned_cols=29 Identities=34% Similarity=0.513 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhCCcEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIAN-EAGASFI 588 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~-elg~~~i 588 (837)
.-|+|.||||+||||+|+.++. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4589999999999999999998 4555444
No 257
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.35 E-value=0.0021 Score=66.80 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
++..|+|.||||+||||+|+.|+..++++++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 556799999999999999999999998877654
No 258
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.34 E-value=0.0017 Score=63.45 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFI 588 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i 588 (837)
+.-|+|.|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 346999999999999999999999999887
No 259
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.31 E-value=0.011 Score=67.10 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=31.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s 593 (837)
++.+..-++|.|+||+|||+++..+|..+ |.+++.++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34667789999999999999999998754 5677777653
No 260
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.31 E-value=0.003 Score=61.48 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
+...++|.||+|+||||+++.++..+|..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34568999999999999999999998876654
No 261
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.30 E-value=0.024 Score=64.16 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s 593 (837)
|+.+..-++|.|+||+|||++|..+|... |.+++.++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44667789999999999999999998654 5677777653
No 262
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.30 E-value=0.0071 Score=65.04 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhcCCcEEEEEccchhHhhh-cHHHHHHHHHHHHhcc-CCEEEEecccc--cCCCCCCchhHHHHccCCc
Q 003231 253 LQSLYKVLVSITETSSVILYLRDVDKLLFQ-SQRFYNLLDKLLKKLS-GSVLVLGSRML--EPEDDCRDVDERLTILFPY 328 (837)
Q Consensus 253 ~~~L~~v~~~~~~~~p~Ilfi~di~~~l~~-~~~~~~~lk~~l~~l~-g~v~iiGs~~~--~~~~~~~~~d~al~rrF~~ 328 (837)
++.+++.+.+..+ +|++|+|||+|.+... +.++...++...+... ..++++|+... ...-+.......+..|+..
T Consensus 124 ~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~ 202 (357)
T 2fna_A 124 FANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFS 202 (357)
T ss_dssp HHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCE
T ss_pred HHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccc
Confidence 4556666666544 5999999999995442 3456666766666532 23445554211 0000001111223445556
Q ss_pred eeeeCCCChHHHHHHHHHHH
Q 003231 329 NLEVKLPEDETHLVNWKAKL 348 (837)
Q Consensus 329 ~IeI~~P~~e~rl~Ilk~~l 348 (837)
.|++.+-+.++...+++..+
T Consensus 203 ~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 203 TVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp EEEECCCCHHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHH
Confidence 89999999999999888654
No 263
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.30 E-value=0.0023 Score=62.78 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAG-----ASFI 588 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg-----~~~i 588 (837)
.-|+|.||||+||||+++.|+..++ ++++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i 37 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEE
Confidence 4689999999999999999999887 5555
No 264
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.29 E-value=0.003 Score=64.81 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
+..|+|.|+||+||||+|+.||..++++++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999877654
No 265
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.28 E-value=0.012 Score=61.91 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
++.+..-++|+||+|+|||+|++.+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998644
No 266
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.28 E-value=0.017 Score=59.55 Aligned_cols=33 Identities=30% Similarity=0.292 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
.++++||+|+|||.++.+++..++.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999999887777766554
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.27 E-value=0.0027 Score=64.56 Aligned_cols=33 Identities=42% Similarity=0.677 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVSMSTI 595 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~l 595 (837)
.++|.||||+||+|.|+.||+.+|++.+ +..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHH
Confidence 4789999999999999999999998775 44444
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.23 E-value=0.0034 Score=62.84 Aligned_cols=32 Identities=38% Similarity=0.777 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
++..+.|.||+|+||||+++.++..+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 45679999999999999999999999775543
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.22 E-value=0.0017 Score=71.32 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=38.0
Q ss_pred ccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 528 GALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 528 iG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
+..+.+.+.+...+...+.. ....+++|.||||+|||++++++|..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 34556666666655442221 123469999999999999999999999888854
No 270
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.19 E-value=0.0027 Score=64.50 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
+..|+|.||||+||||+++.||..++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3569999999999999999999999986654
No 271
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.10 E-value=0.0049 Score=60.27 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
++..+.|.|++|+||||+++.++..+ |++++.++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 44568899999999999999999988 9999888753
No 272
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.10 E-value=0.0042 Score=61.74 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA-GASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el-g~~~i~v~ 591 (837)
+.-|.|.|++|+||||+++.++..+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4569999999999999999999998 68887665
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.09 E-value=0.013 Score=57.13 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.3
Q ss_pred CCceEEEEcCCCChHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKA 578 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAra 578 (837)
+..-+.|.||+|+|||||++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 455689999999999999994
No 274
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.07 E-value=0.0044 Score=60.83 Aligned_cols=31 Identities=29% Similarity=0.178 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA---GASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el---g~~~i~v~ 591 (837)
-+.|.|+||+||||+++.++..+ |++++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 89888765
No 275
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.04 E-value=0.004 Score=62.93 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
.|+|.||||+||||+|+.|+..+|++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887655
No 276
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.04 E-value=0.029 Score=64.57 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=48.3
Q ss_pred eEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCC--CCcHHHHHHHHHhhhcCCCCHH
Q 003231 620 TIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPF--DLDEAIIRRFERRIMVGLPSAE 697 (837)
Q Consensus 620 sVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~--~Ld~aL~rRF~~~I~~~~P~~e 697 (837)
-+|+|||+..++.. ........+..+... . ..-.+-+|.+|.+|. .++..++.-|..+|.|...+..
T Consensus 299 ivlvIDE~~~ll~~-----~~~~~~~~l~~Lar~---g---Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 299 IVVLVDEFADLMMT-----VGKKVEELIARLAQK---A---RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 367 (512)
T ss_dssp EEEEEETHHHHHHH-----HHHHHHHHHHHHHHH---C---GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHH
T ss_pred EEEEEeCHHHHHhh-----hhHHHHHHHHHHHHH---h---hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHH
Confidence 38899999877531 011111222222211 1 112367777888876 6888999999888999999999
Q ss_pred HHHHHHHH
Q 003231 698 NREMILKT 705 (837)
Q Consensus 698 er~~IL~~ 705 (837)
+...|+..
T Consensus 368 dsr~ilg~ 375 (512)
T 2ius_A 368 DSRTILDQ 375 (512)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCC
Confidence 98888753
No 277
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.98 E-value=0.0059 Score=67.64 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=45.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-ccc-cc---cc-----cccHHHHHHHHHHHHhcCCeEE
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG----ASFINVSMS-TIT-SK---WF-----GEDEKNVRALFTLAAKVSPTII 622 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg----~~~i~v~~s-~l~-s~---~~-----G~~e~~l~~lf~~A~~~~psVL 622 (837)
.+...++|.||+|+||||++++++..+. ..++.+... ++. .. ++ |.....+...+..+-...|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 4556799999999999999999998762 333333211 110 00 11 1111223445566666789999
Q ss_pred Eecccc
Q 003231 623 FVDEVD 628 (837)
Q Consensus 623 fIDEID 628 (837)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999994
No 278
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.97 E-value=0.0054 Score=62.14 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
..+.|.||+|+||||+++.++..+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999987764
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.95 E-value=0.0043 Score=61.42 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
.|.|.|++|+||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987764
No 280
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.94 E-value=0.0044 Score=67.29 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
..++|.||+|+|||++++.+|..++..++.++.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4689999999999999999999999888888654
No 281
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.90 E-value=0.0049 Score=62.91 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
-|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999999766543
No 282
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.89 E-value=0.0033 Score=61.66 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAG---ASFINVSMS 593 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg---~~~i~v~~s 593 (837)
-|+|.||||+||||+++.|+..++ .++..++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 589999999999999999999885 335555433
No 283
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.87 E-value=0.0039 Score=62.20 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
.+.|.||+|+||||+++.++. +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 888776544
No 284
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.84 E-value=0.0064 Score=59.93 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 003231 562 ILLFGPPGTGKTMLAKAIANEA---GASFINVS 591 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~el---g~~~i~v~ 591 (837)
|.|.|++|+||||+++.+++.+ |++++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999999 99887654
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.83 E-value=0.006 Score=60.96 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMST 594 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~ 594 (837)
++..+.|.||+|+||||+++.+|..+ |...+.++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 45679999999999999999999988 55544555433
No 286
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.79 E-value=0.0065 Score=60.73 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg 584 (837)
+.|+|.||+|+|||+|++.|..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3489999999999999999988763
No 287
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.78 E-value=0.062 Score=60.85 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=31.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
|+.+..-++|.|+||+|||++|..+|... |.+++.++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45667789999999999999999998765 6778777654
No 288
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.76 E-value=0.006 Score=63.07 Aligned_cols=30 Identities=30% Similarity=0.626 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFI 588 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i 588 (837)
+..+.|.||+|+||||+++.|++.+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999987654
No 289
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.76 E-value=0.019 Score=57.86 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=65.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc---------ccccc-----------c--cc----cHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA---GASFINVSMST---------ITSKW-----------F--GE----DEKNVRAL 610 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~---------l~s~~-----------~--G~----~e~~l~~l 610 (837)
..+++++++|.|||++|-.+|-.+ |..+..+..-. +.... . .. ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999998766 77776663211 22221 0 00 12334445
Q ss_pred HHHHHh----cCCeEEEecccccccCCCCCcchHHHHHHHHHHHHHhhccccccCCceEEEEEecCCCCCCcHHHHHHHH
Q 003231 611 FTLAAK----VSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNGERILVLAATNRPFDLDEAIIRRFE 686 (837)
Q Consensus 611 f~~A~~----~~psVLfIDEID~L~~~r~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~~vlVIaTTN~~~~Ld~aL~rRF~ 686 (837)
+..+++ ..+.+|+|||+.....-+.-+ ...++..+.. .+.+.-||.|+|.+ +++++..-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~---------~~ev~~~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP---------LEEVISALNA----RPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC---------HHHHHHHHHT----SCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC---------HHHHHHHHHh----CcCCCEEEEECCCC---cHHHHHhCc
Confidence 555544 347899999996543211111 1223333322 33456788888874 566766554
Q ss_pred Hh
Q 003231 687 RR 688 (837)
Q Consensus 687 ~~ 688 (837)
.+
T Consensus 173 ~V 174 (196)
T 1g5t_A 173 TV 174 (196)
T ss_dssp EE
T ss_pred ce
Confidence 43
No 290
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.75 E-value=0.059 Score=61.81 Aligned_cols=39 Identities=10% Similarity=-0.004 Sum_probs=31.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s 593 (837)
++.+..-++|.|+||+|||++|..+|..+ |.+++.++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34667789999999999999999998765 5577777654
No 291
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.66 E-value=0.024 Score=70.01 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 527 IGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 527 IiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
.+|.+..++.|.+++... ...+-+.|+||.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 389999999998887531 12467899999999999999999863
No 292
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.64 E-value=0.0075 Score=59.98 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
.+.|.|++|+|||++++.+|..+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998887543
No 293
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.63 E-value=0.0082 Score=62.16 Aligned_cols=31 Identities=29% Similarity=0.609 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
+..+.|.||+|+|||++++.||..+|++++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3579999999999999999999999987754
No 294
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.63 E-value=0.047 Score=58.42 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMS 593 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s 593 (837)
++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45679999999999999999998755 5566666654
No 295
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.58 E-value=0.0058 Score=66.64 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=30.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
+.-|+|.||+|+|||+|+..||+.++..+|..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34699999999999999999999999888776543
No 296
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.58 E-value=0.0084 Score=62.75 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
...+.|.||+|+||||+++.+|..+|.+|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 457999999999999999999999999887643
No 297
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.57 E-value=0.0064 Score=61.02 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
.+.|+|++||||||+++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4889999999999999999999898886543
No 298
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.56 E-value=0.007 Score=59.95 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
+..|.|.|++|+|||++++.||.. |++++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 456999999999999999999998 8777643
No 299
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.53 E-value=0.0038 Score=62.47 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGAS 586 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~ 586 (837)
.+.-|+|.|+||+||||+++.+++.++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 34579999999999999999999987544
No 300
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.53 E-value=0.0071 Score=60.45 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=25.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
.+.|.||+|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 578999999999999999988 8888764
No 301
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.47 E-value=0.0085 Score=59.67 Aligned_cols=32 Identities=19% Similarity=0.081 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc--EEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGAS--FINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~--~i~v 590 (837)
+.-|+|.|+||+||||+|+.|+..++.. ++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 3568999999999999999999998763 5443
No 302
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.43 E-value=0.0046 Score=61.92 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+.-|+|.|+||+||||+++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999874
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.42 E-value=0.048 Score=61.25 Aligned_cols=93 Identities=17% Similarity=0.309 Sum_probs=53.4
Q ss_pred ccccccccchHHHHHHHHHHHcccCCchhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cccc
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAG---ASFINVSMS-TITS 597 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~~s-~l~s 597 (837)
.++++++-....+..+..++. .+...++|.||+|+||||++++++..+. ..++.+.-. ++..
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~--------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 456666544444445554421 2445689999999999999999998874 233333211 1110
Q ss_pred c-----ccccc-HHHHHHHHHHHHhcCCeEEEecccc
Q 003231 598 K-----WFGED-EKNVRALFTLAAKVSPTIIFVDEVD 628 (837)
Q Consensus 598 ~-----~~G~~-e~~l~~lf~~A~~~~psVLfIDEID 628 (837)
. .+... .-.....+..+....|.++++.|+.
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 01110 0112334455556788999999874
No 304
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.41 E-value=0.027 Score=53.94 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=37.8
Q ss_pred CcEEEEEccchhHhhhc--HHHHHHHHHHHHhccCCE-EEEecccccCCCCCCchhHHHHccCCceeeeCC
Q 003231 267 SSVILYLRDVDKLLFQS--QRFYNLLDKLLKKLSGSV-LVLGSRMLEPEDDCRDVDERLTILFPYNLEVKL 334 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~--~~~~~~lk~~l~~l~g~v-~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~ 334 (837)
+|-||+|||++. +... ..+++++....++ |.. +||.++.. ....... ++|..||.+-..+.+
T Consensus 83 ~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~--g~~~iiits~~~--p~~l~~~-~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 83 EAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS--GKGFLLLGSEYT--PQQLVIR-EDLRTRMAYCLVYEV 147 (149)
T ss_dssp GCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH--TCCEEEEEESSC--TTTSSCC-HHHHHHGGGSEECCC
T ss_pred CCCEEEEeCccc-cChHHHHHHHHHHHHHHHc--CCcEEEEECCCC--HHHcccc-HHHHHHHhcCeeEEe
Confidence 577899999998 4332 3477777777665 543 66654321 1222334 788878766655544
No 305
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.39 E-value=0.012 Score=61.37 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
+...+.|.||+|+||||+++.||..+|+.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34568999999999999999999999987763
No 306
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.39 E-value=0.2 Score=57.26 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.++..++|.||+|+||||+++.||..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 456679999999999999999999876
No 307
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.36 E-value=0.011 Score=64.21 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-cc----cc---cccccHHHHHHHHHHHHhcCCeEEEeccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG--ASFINVSMST-IT----SK---WFGEDEKNVRALFTLAAKVSPTIIFVDEV 627 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg--~~~i~v~~s~-l~----s~---~~G~~e~~l~~lf~~A~~~~psVLfIDEI 627 (837)
+...++|.||+|+|||||+++++.... ...+.++... +. .. ++.......+..+..|....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 345799999999999999999998873 2344444321 11 01 22001223445666677788999999998
Q ss_pred cc
Q 003231 628 DS 629 (837)
Q Consensus 628 D~ 629 (837)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 53
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.35 E-value=0.014 Score=60.56 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=31.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecccccc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGAS--------FINVSMSTITS 597 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~--------~i~v~~s~l~s 597 (837)
+..|.|.|++|+||||+|+.|+..+|++ ++.+++.++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4569999999999999999999999976 34567766643
No 309
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.29 E-value=0.013 Score=59.09 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
+.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 35689999999999999999998 88877654
No 310
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.28 E-value=0.052 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
+.+++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999998887654
No 311
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=95.28 E-value=0.016 Score=49.80 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHhhcCCCChhHHhhcccCCCCCChhhHHHHHHHHHHhhhhcCCCccccCCc
Q 003231 338 ETHLVNWKAKLEEDMKVLQFQDNKNHIAEVLAANDLECDDLGSICQADTMVLSNYIEEIVVSAISHHLMDNEDPEYRNGK 417 (837)
Q Consensus 338 e~rl~Ilk~~l~~d~~~~~~~~n~~~i~~vl~~~~~~~~dL~~~~~~d~~l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~ 417 (837)
++|.+||+.++.+ .-...+++...|+..|.+ |||++|..++..|+-.++.+..
T Consensus 1 ~~R~~Il~~~l~~----------------~~~~~~vdl~~lA~~t~G---~SGADi~~l~~eAa~~ai~~~~-------- 53 (82)
T 2dzn_B 1 MERRLIFGTIASK----------------MSLAPEADLDSLIIRNDS---LSGAVIAAIMQEAGLRAVRKNR-------- 53 (82)
T ss_dssp -----------------------------CEECTTCCSTTTTTSSCC---CCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHcC----------------CCCCCcCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhcc--------
Confidence 4788999987632 112346888899999999 9999999999999999987643
Q ss_pred eeecHHhHHHHHHHh
Q 003231 418 LVISSKSLSHGLSIF 432 (837)
Q Consensus 418 ~~i~~~~~~~~l~~~ 432 (837)
..|+.+||+.|+..+
T Consensus 54 ~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 54 YVILQSDLEEAYATQ 68 (82)
T ss_dssp SEECHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHH
Confidence 349999999999844
No 312
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.19 E-value=0.011 Score=59.17 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.++.-++|.||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3556799999999999999999999884
No 313
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.18 E-value=0.013 Score=63.20 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=30.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
+.-++|.||+|+|||+||..+|..++..++..+.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 45688999999999999999999999888776653
No 314
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.17 E-value=0.019 Score=56.38 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
++..++|.|+||+||||+++.+|..+ |.++..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 45678999999999999999999887 4455555543
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.17 E-value=0.0094 Score=59.69 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=26.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA-GASFIN 589 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el-g~~~i~ 589 (837)
.+..-+.|.||+|+||||+++.++..+ ++.++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 344568899999999999999999987 555544
No 316
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.16 E-value=0.016 Score=59.46 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
.++..+.|.|++|+|||++++.+|..+|++++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 345579999999999999999999999988764
No 317
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.12 E-value=0.037 Score=60.43 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=31.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 555 LLKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 555 ~~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
++.+..-++|.|+||+|||++|..+|..+ +.++..++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 45677789999999999999999998764 6777776653
No 318
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.10 E-value=0.062 Score=57.45 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=49.4
Q ss_pred CcEEEEEccchhHhh----hcHHHHHHHHHHHHhcc-CCEEEEecccc--cCCCCCCchhHHHHccCCceeeeCCCChHH
Q 003231 267 SSVILYLRDVDKLLF----QSQRFYNLLDKLLKKLS-GSVLVLGSRML--EPEDDCRDVDERLTILFPYNLEVKLPEDET 339 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~----~~~~~~~~lk~~l~~l~-g~v~iiGs~~~--~~~~~~~~~d~al~rrF~~~IeI~~P~~e~ 339 (837)
+|++|+|||+|.+.. ...++...|+..+.... ..++++|+... .+.-+.......+..++...|.+.+-+.++
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 599999999999554 34678888888777642 23344554221 100000011122344555689999999999
Q ss_pred HHHHHHHH
Q 003231 340 HLVNWKAK 347 (837)
Q Consensus 340 rl~Ilk~~ 347 (837)
...+++..
T Consensus 208 ~~~~l~~~ 215 (350)
T 2qen_A 208 SVEFLKRG 215 (350)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888753
No 319
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.03 E-value=0.037 Score=65.27 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 569999999999999988876554
No 320
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.01 E-value=0.017 Score=58.25 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
..+.|.|++|+|||++++.++..+|++++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4589999999999999999999999887653
No 321
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.99 E-value=0.02 Score=64.24 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
.+.-|+|+|+||+||||+|+.++..+++.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 35668999999999999999999999876654
No 322
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.92 E-value=0.016 Score=56.97 Aligned_cols=26 Identities=15% Similarity=0.454 Sum_probs=22.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
..-+.|.||+|+|||||++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998763
No 323
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.90 E-value=0.014 Score=61.90 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
+.-|.|.|++|+||||+|+.++ .+|++++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4569999999999999999999 688877544
No 324
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.84 E-value=0.015 Score=57.71 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
++.-+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999876
No 325
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.84 E-value=0.042 Score=54.37 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.0
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKA 578 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAra 578 (837)
+.+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999987443
No 326
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.82 E-value=0.014 Score=63.67 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSM 592 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~ 592 (837)
.-|+|.||+|+|||++|+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468999999999999999999999976665543
No 327
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.81 E-value=0.098 Score=60.14 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSM 592 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~ 592 (837)
++..|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46679999999999999999999766 666766665
No 328
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.79 E-value=0.41 Score=51.63 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSM 592 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~ 592 (837)
.++..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456779999999999999999999776 566665554
No 329
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.76 E-value=0.021 Score=57.47 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMST 594 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s~ 594 (837)
++.-++|.|++|+||||+++.++..+ |.+++.++...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45678999999999999999999876 45677776443
No 330
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.75 E-value=0.016 Score=62.56 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
.-++|.||+|+|||+||..+|..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3588999999999999999999998777665543
No 331
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.73 E-value=0.1 Score=58.93 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=48.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccccc----------------c---cc-cHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSMSTITSKW----------------F---GE-DEKNVRALFT 612 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s~l~s~~----------------~---G~-~e~~l~~lf~ 612 (837)
.+++.+++.|++|+||||++..+|..+ |..+.-+++....... . +. ....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356789999999999999999998665 7777777775422110 0 01 1222345566
Q ss_pred HHHhcCCeEEEeccccc
Q 003231 613 LAAKVSPTIIFVDEVDS 629 (837)
Q Consensus 613 ~A~~~~psVLfIDEID~ 629 (837)
.+......++|||=.-.
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 66555678999987543
No 332
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.72 E-value=0.019 Score=57.79 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
..|.|.||+|||||++++.||..+|++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 368999999999999999999999999984
No 333
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.70 E-value=0.017 Score=58.17 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455689999999999999999999874
No 334
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.70 E-value=0.017 Score=61.26 Aligned_cols=31 Identities=35% Similarity=0.497 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA-GASFINV 590 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el-g~~~i~v 590 (837)
.-|+|.|+||+||||+|+.++..+ ++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 458999999999999999999974 6655533
No 335
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.65 E-value=0.072 Score=64.58 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=35.1
Q ss_pred ccccccccchHHHHHHHHHHHcccCC--chhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 522 VTFADIGALNEIKESLQELVMLPLRR--PDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 522 v~fddIiG~d~vk~~L~~~i~~~l~~--~e~~~~~~~~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
.+|+++.-.+...+.+...-..|... ..+.. .+.....+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~--~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLK--LYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH--HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHH--HHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 36777766666666665544333211 11111 0122357999999999999987777554
No 336
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.60 E-value=0.026 Score=65.09 Aligned_cols=70 Identities=27% Similarity=0.382 Sum_probs=45.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-cccc---c--------ccccHHHHHHHHHHHHhcCCeEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAG--ASFINVSMST-ITSK---W--------FGEDEKNVRALFTLAAKVSPTIIFV 624 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg--~~~i~v~~s~-l~s~---~--------~G~~e~~l~~lf~~A~~~~psVLfI 624 (837)
..+++|.||+|+||||++++++..+. ...+.+.... +... + ++.....+..++..+.++.|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45699999999999999999998773 3455544322 2110 0 0111122445556666778999999
Q ss_pred cccc
Q 003231 625 DEVD 628 (837)
Q Consensus 625 DEID 628 (837)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9984
No 337
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.60 E-value=0.023 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGA 585 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~ 585 (837)
-++|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 338
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.59 E-value=0.028 Score=56.46 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=42.7
Q ss_pred CCceEEEEcCCCChHH-HHHHHHHHHh--CCcEEEEecc---ccccccc---cc-----cHHHHHHHHHHHHhcCCeEEE
Q 003231 558 PCRGILLFGPPGTGKT-MLAKAIANEA--GASFINVSMS---TITSKWF---GE-----DEKNVRALFTLAAKVSPTIIF 623 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT-~LAralA~el--g~~~i~v~~s---~l~s~~~---G~-----~e~~l~~lf~~A~~~~psVLf 623 (837)
...-.+++||.|+||| .|.+++.+.. +..++.+++. .+..... |. .......++... ....+|+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIl 96 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIG 96 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEE
Confidence 3455889999999999 8888887654 6777777644 1111100 00 001112223322 2357999
Q ss_pred ecccccc
Q 003231 624 VDEVDSM 630 (837)
Q Consensus 624 IDEID~L 630 (837)
|||+.-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999977
No 339
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.56 E-value=0.047 Score=54.52 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMST 594 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~ 594 (837)
++.-+.|.||+|+||||+++.++..+ +.+++.++...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 44568999999999999999999876 66666665443
No 340
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.55 E-value=0.022 Score=56.53 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
+..-+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999998763
No 341
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.47 E-value=0.021 Score=63.66 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
..-++|.||+|+|||+||..+|..++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 346889999999999999999999988776654
No 342
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.40 E-value=0.022 Score=56.93 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
++.-+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999887
No 343
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.34 E-value=0.2 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~ 581 (837)
...+++.||+|||||++...+.-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 36799999999999987766543
No 344
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.30 E-value=0.022 Score=57.00 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
+...+.|.||+|+|||||++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999998763
No 345
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.24 E-value=0.17 Score=56.11 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=37.1
Q ss_pred ccCCCCCceEeecChhHHHHHHHHHHhhhhC---CeEEEeeccccch
Q 003231 104 NLSPASRTILLSGPAELYQQMLAKALAHFFE---SKLLLLDVNDFSL 147 (837)
Q Consensus 104 ~l~~~~~~ILL~gP~e~yq~~LakALA~~~~---a~ll~ld~~~~~~ 147 (837)
.++...-.||++|+++.+++++|+++.+... .+|+.+|...++.
T Consensus 155 ~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~ 201 (387)
T 1ny5_A 155 KISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR 201 (387)
T ss_dssp HHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH
T ss_pred HhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH
Confidence 3556677799999999999999999998875 6899999887754
No 346
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.04 E-value=0.024 Score=57.27 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFINVSM 592 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~ 592 (837)
...++|.||+|+|||+||..++.... .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 46799999999999999999998865 6655443
No 347
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.04 E-value=0.11 Score=52.05 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=42.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc--------cccccccccc-----HHHHHHHHHHHHhcCCeE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS--------TITSKWFGED-----EKNVRALFTLAAKVSPTI 621 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s--------~l~s~~~G~~-----e~~l~~lf~~A~~~~psV 621 (837)
+..-.+++||+|+|||+.+..++..+ |..++.+... .+.+ ..|.. ......+++.+.. ...+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~~-~~dv 84 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFEE-DTEV 84 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCCT-TCSE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHhc-cCCE
Confidence 34568899999999999999888776 6666555321 1111 11100 0001234443332 4689
Q ss_pred EEecccccc
Q 003231 622 IFVDEVDSM 630 (837)
Q Consensus 622 LfIDEID~L 630 (837)
|+|||+..+
T Consensus 85 ViIDEaqfl 93 (191)
T 1xx6_A 85 IAIDEVQFF 93 (191)
T ss_dssp EEECSGGGS
T ss_pred EEEECCCCC
Confidence 999999875
No 348
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.93 E-value=0.076 Score=61.37 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=29.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTI 595 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l 595 (837)
+.-|+|+|.||+|||++|+.+|..+ +.....++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 4568999999999999999999988 445555565443
No 349
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.93 E-value=0.083 Score=59.61 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
++..++|+|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35679999999999999999999876 5666666654
No 350
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.92 E-value=0.15 Score=60.46 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=23.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
-.|++||||||||+++-.+...+ +..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 47999999999998766655444 5566555543
No 351
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.91 E-value=0.043 Score=54.38 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=56.5
Q ss_pred HHHHHHhcccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCCCCCceEeecChhHHHHHHHHHHhh
Q 003231 52 IEKELMRQVLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSPASRTILLSGPAELYQQMLAKALAH 131 (837)
Q Consensus 52 ~~~~~~~~vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gP~e~yq~~LakALA~ 131 (837)
++..+...-++++--..||++|-+. +.+.+.++. .+-..+... ... ..++.|||+||++.++++||+|+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~-~~~~~~~~~-----~~~--~~~~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 6 QESLIQSMFMPREILRASLSDVDLN-DDGRIKAIR-FAERFVAEY-----EPG--KKMKGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp HHHHEEEESSCGGGGCCCTTSSCCS-SHHHHHHHH-HHHHHHHHC-----CSS--CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHcCCHhhccCC-ChhHHHHHH-HHHHHHHHh-----hhc--cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4455555666665567799999775 323332222 222222111 000 1237899999999999999999999
Q ss_pred hh---CCeEEEeeccccchhh
Q 003231 132 FF---ESKLLLLDVNDFSLKM 149 (837)
Q Consensus 132 ~~---~a~ll~ld~~~~~~~~ 149 (837)
++ +.+++.++..++...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 77 ELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp HHHTTTCCEEEEEHHHHHHHH
T ss_pred HHHHcCCeEEEEEhHHHHHHH
Confidence 88 6677777777665544
No 352
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.89 E-value=0.03 Score=55.14 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg 584 (837)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998764
No 353
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.89 E-value=0.18 Score=53.92 Aligned_cols=72 Identities=22% Similarity=0.068 Sum_probs=46.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---------------c-cc----ccHHHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK---------------W-FG----EDEKNVRALFTLAA 615 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~---------------~-~G----~~e~~l~~lf~~A~ 615 (837)
+..+++.||+|+|||+++..+|..+ |..+..+++.-.... . .+ .....+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999776 666666665422110 0 00 11222345556665
Q ss_pred hcCCeEEEecccccc
Q 003231 616 KVSPTIIFVDEVDSM 630 (837)
Q Consensus 616 ~~~psVLfIDEID~L 630 (837)
.....+|+||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 456789999986543
No 354
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.88 E-value=0.03 Score=56.19 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+..-+.|.||+|+|||||++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456788999999999999999998874
No 355
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.84 E-value=0.061 Score=56.94 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=29.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 003231 556 LKPCRGILLFGPPGTGKTMLAKAIANEA----GASFINVSM 592 (837)
Q Consensus 556 ~~p~~~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~ 592 (837)
+.+..-++|.||||+|||+|++.+|..+ |.+++.++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4566779999999999999999998765 445655554
No 356
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.83 E-value=1.1 Score=48.26 Aligned_cols=79 Identities=15% Similarity=0.029 Sum_probs=56.8
Q ss_pred CcEEEEEccchhHhhhcHHHHHHHHHHHHhccCCE-EEEecccccCCCCCCchhHHHHccCCceeeeCCCChHHHHHHHH
Q 003231 267 SSVILYLRDVDKLLFQSQRFYNLLDKLLKKLSGSV-LVLGSRMLEPEDDCRDVDERLTILFPYNLEVKLPEDETHLVNWK 345 (837)
Q Consensus 267 ~p~Ilfi~di~~~l~~~~~~~~~lk~~l~~l~g~v-~iiGs~~~~~~~~~~~~d~al~rrF~~~IeI~~P~~e~rl~Ilk 345 (837)
..=|++|||+|.-+ +.+..+.|.+.++..+..+ +|+.++..+...+...+-++|..|-. .++..+|+.++....++
T Consensus 76 ~~kvvii~~~~~kl--~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 76 SRQTLLLLLPENGP--NAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp SCEEEEEECCSSCC--CTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCTTHHHHHHH
T ss_pred CCeEEEEECCCCCC--ChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCHHHHHHHHH
Confidence 45688999998722 2345666778888776554 47776555544445677888888885 99999999988887777
Q ss_pred HHH
Q 003231 346 AKL 348 (837)
Q Consensus 346 ~~l 348 (837)
..+
T Consensus 153 ~~~ 155 (343)
T 1jr3_D 153 ARA 155 (343)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 357
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.81 E-value=0.12 Score=55.99 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356679999999999999999999876
No 358
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.80 E-value=0.19 Score=55.24 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=36.1
Q ss_pred cCCCCCceEeecChhHHHHHHHHHHhhhhCCe--EEEeeccccch
Q 003231 105 LSPASRTILLSGPAELYQQMLAKALAHFFESK--LLLLDVNDFSL 147 (837)
Q Consensus 105 l~~~~~~ILL~gP~e~yq~~LakALA~~~~a~--ll~ld~~~~~~ 147 (837)
++.....||++|+++.+++.+|+++.++.+.+ |+.+|...++.
T Consensus 148 ~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~ 192 (368)
T 3dzd_A 148 IAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQ 192 (368)
T ss_dssp HHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCT
T ss_pred hhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCCh
Confidence 44556679999999999999999999988765 99999887753
No 359
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.72 E-value=0.091 Score=60.66 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=50.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc----------------------ccH
Q 003231 556 LKPCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK------WFG----------------------EDE 604 (837)
Q Consensus 556 ~~p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~------~~G----------------------~~e 604 (837)
+.+...++|.||+|+|||+|++.++... |.+.+.+...+-... .+| ...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 4566779999999999999999998765 445555554321000 000 123
Q ss_pred HHHHHHHHHHHhcCCeEEEeccccccc
Q 003231 605 KNVRALFTLAAKVSPTIIFVDEVDSML 631 (837)
Q Consensus 605 ~~l~~lf~~A~~~~psVLfIDEID~L~ 631 (837)
...+.++..+....|.+|+||=+..|.
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 345556666777889999999666554
No 360
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.58 E-value=0.044 Score=56.52 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAGASFINV 590 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg~~~i~v 590 (837)
.+-|.||||+||||+|+.|+..++++++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 477999999999999999999999887643
No 361
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.53 E-value=0.082 Score=56.71 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.++..+.|.||+|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999999876
No 362
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.47 E-value=0.047 Score=56.04 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFIN 589 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~ 589 (837)
..|.|.|++|||||++++.||..+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999999864
No 363
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.43 E-value=0.045 Score=55.10 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
+.+-+.|.||+|+|||+|++.|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345689999999999999999998764
No 364
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.41 E-value=0.15 Score=54.31 Aligned_cols=73 Identities=25% Similarity=0.217 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---------------cc----c-ccHHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK---------------WF----G-EDEKNVRALFTLA 614 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~---------------~~----G-~~e~~l~~lf~~A 614 (837)
++..+.+.||+|+|||++++.+|..+ +..+..+++.-.... .+ + ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999766 555655554211100 01 0 1112234455666
Q ss_pred HhcCCeEEEecccccc
Q 003231 615 AKVSPTIIFVDEVDSM 630 (837)
Q Consensus 615 ~~~~psVLfIDEID~L 630 (837)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567899999997544
No 365
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.39 E-value=0.052 Score=52.57 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345568999999999999999999987
No 366
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.37 E-value=0.36 Score=54.25 Aligned_cols=73 Identities=25% Similarity=0.192 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---------------cc--c--cc-HHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTITSK---------------WF--G--ED-EKNVRALFTLA 614 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l~s~---------------~~--G--~~-e~~l~~lf~~A 614 (837)
++..+++.||+|+||||++..+|..+ +..+..+++.-.... .+ + .. .......+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 55678899999999999999999876 556666655321110 00 0 11 12224555665
Q ss_pred HhcCCeEEEecccccc
Q 003231 615 AKVSPTIIFVDEVDSM 630 (837)
Q Consensus 615 ~~~~psVLfIDEID~L 630 (837)
+.....+++||=.-.+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5456689999865443
No 367
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.36 E-value=0.048 Score=54.67 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+..-+.|.||+|+|||||++.++..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4556788999999999999999998874
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.35 E-value=0.023 Score=56.72 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg 584 (837)
-|.|.||+|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 369
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.34 E-value=0.045 Score=55.60 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||+|+|||||++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345668999999999999999999876
No 370
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.19 E-value=0.25 Score=60.69 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~ 581 (837)
+..-++|.||.|+||||+.|.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345689999999999999999874
No 371
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.18 E-value=0.062 Score=63.31 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMS 593 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s 593 (837)
+.-|+|.|+||+||||+|++|+..+ |.+++.++..
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 4569999999999999999999999 9999988743
No 372
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.13 E-value=0.1 Score=57.47 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.++..+.|.||+|+||||+++.+|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 456679999999999999999999876
No 373
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.09 E-value=0.083 Score=56.35 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
++.-+.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 455688999999999999999998885
No 374
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.08 E-value=0.056 Score=53.61 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 003231 562 ILLFGPPGTGKTMLAKAIANEAGASFINVSMST 594 (837)
Q Consensus 562 iLL~GPpGtGKT~LAralA~elg~~~i~v~~s~ 594 (837)
+|++|++|+|||++|..+|.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 375
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.06 E-value=0.061 Score=55.20 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG--ASFINV 590 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg--~~~i~v 590 (837)
...-+.|.||||+||||+++.++..++ ..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 445688999999999999999999986 455433
No 376
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.98 E-value=0.11 Score=52.71 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.9
Q ss_pred CceEEEEcCCCChHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAK 577 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAr 577 (837)
.+.+++.+|+|+|||..+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 3579999999999998644
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.90 E-value=0.06 Score=54.95 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+..-+.|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456789999999999999999998764
No 378
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.88 E-value=0.24 Score=59.33 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCChHHHHHHHH-HHH---hCCcEEEEec
Q 003231 558 PCRGILLFGPPGTGKTMLAKAI-ANE---AGASFINVSM 592 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAral-A~e---lg~~~i~v~~ 592 (837)
...++++.||+|+|||..+... ... -+...+.+.+
T Consensus 38 ~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 3578999999999999987433 222 2555555543
No 379
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.84 E-value=0.19 Score=50.62 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=15.9
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKA 578 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAra 578 (837)
+.+++.+|+|+|||..+-.
T Consensus 58 ~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999986543
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.83 E-value=0.065 Score=55.22 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGAS 586 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~ 586 (837)
++.-+-|.||+|+||||+++.++..+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 44568899999999999999999988754
No 381
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.77 E-value=0.12 Score=56.65 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=45.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEec-ccccc----c---ccc-c-------cHHHHHHHHHHHHhcCC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG--ASFINVSM-STITS----K---WFG-E-------DEKNVRALFTLAAKVSP 619 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg--~~~i~v~~-s~l~s----~---~~G-~-------~e~~l~~lf~~A~~~~p 619 (837)
+...++|.||+|+|||||+++++.... ...+.++. .++.. . ++- + ....++..+..+....|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 456799999999999999999998773 23444442 12110 0 111 1 11124556666667788
Q ss_pred eEEEecccc
Q 003231 620 TIIFVDEVD 628 (837)
Q Consensus 620 sVLfIDEID 628 (837)
.+++++|+.
T Consensus 254 d~~l~~e~r 262 (361)
T 2gza_A 254 TRILLAELR 262 (361)
T ss_dssp SEEEESCCC
T ss_pred CEEEEcCch
Confidence 999999985
No 382
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.50 E-value=0.075 Score=57.14 Aligned_cols=31 Identities=32% Similarity=0.572 Sum_probs=26.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAGASF 587 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg~~~ 587 (837)
.+...+.|+||+|+|||||++.|+..+...+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 5667799999999999999999999874333
No 383
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.45 E-value=0.29 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...|+|.|+||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 456999999999999999999754
No 384
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.41 E-value=0.13 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
....+++.|++|+|||+|+.+++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998754
No 385
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.37 E-value=0.25 Score=53.99 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVS 591 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~ 591 (837)
....+.|.|+||+|||+++..++..+ |..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34569999999999999999998876 55544443
No 386
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.33 E-value=0.054 Score=57.75 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAG---ASFINVSMSTIT 596 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~~s~l~ 596 (837)
.-|.|.||+|+||||+|+.++..++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999999875 445556665553
No 387
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.22 E-value=0.44 Score=58.75 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~ 581 (837)
.-++|.||.|+||||+.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999953
No 388
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.02 E-value=0.049 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=16.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHH-HHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIA-NEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA-~el 583 (837)
+..-+.|.||+|+||||+++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45568899999999999999999 765
No 389
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.01 E-value=0.27 Score=50.06 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el 583 (837)
...|+|.|++|+|||+|+.++....
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4569999999999999999998643
No 390
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.00 E-value=0.3 Score=58.29 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH-H---hCCcEEEEec
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIAN-E---AGASFINVSM 592 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~-e---lg~~~i~v~~ 592 (837)
...++++.||+|+|||+.+-..+- . -+...+.+.+
T Consensus 45 ~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 357899999999999999854432 1 2445555443
No 391
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.91 E-value=0.26 Score=50.20 Aligned_cols=33 Identities=12% Similarity=-0.061 Sum_probs=25.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~ 591 (837)
..-.+++||.|+|||+.+-.++..+ |..++.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3446789999999999998887665 66666665
No 392
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=91.86 E-value=4.2 Score=46.21 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=33.3
Q ss_pred CChhhHHHHHHHHHHhhhhcCCCccccCCceeecHHhHHHHHHHhhhh
Q 003231 388 VLSNYIEEIVVSAISHHLMDNEDPEYRNGKLVISSKSLSHGLSIFQEC 435 (837)
Q Consensus 388 l~~~~Ie~iv~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 435 (837)
.|.-..+.+++.|-.++.++..+ .|+.+|+..|+.+++..
T Consensus 447 iSpR~leaLiRlA~A~A~L~gR~--------~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 447 VTRRQLESVERLAKAHARMRLSD--------DVEPEDVDIAAELVDWY 486 (506)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCS--------EECHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCcC--------CCCHHHHHHHHHHHHHH
Confidence 78889999999998888776553 38889999999999763
No 393
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.79 E-value=0.087 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el 583 (837)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 394
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.77 E-value=0.17 Score=57.54 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 468999999999999999887654
No 395
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.70 E-value=0.18 Score=49.46 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~ 591 (837)
..-+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3468999999999999999999876 45544443
No 396
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.61 E-value=0.053 Score=56.49 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA-GASFI 588 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el-g~~~i 588 (837)
.+.-|.|.|++|+||||+++.|+..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 44568999999999999999999998 44443
No 397
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.56 E-value=0.11 Score=55.95 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.++.-+.|.||+|+|||||++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 455678899999999999999999877
No 398
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.52 E-value=0.9 Score=51.54 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=25.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA--------GASFINVSMS 593 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el--------g~~~i~v~~s 593 (837)
+.+++.+|+|+|||..+-..+... +...+.+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 469999999999998877766554 5555655543
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.51 E-value=0.12 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
...-+.|.||+|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568999999999999999998875
No 400
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.51 E-value=0.15 Score=50.34 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFI 588 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg~~~i 588 (837)
...++||.|++|+|||++|.++... |..++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 3578999999999999999999874 55443
No 401
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.45 E-value=0.13 Score=52.56 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=24.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcE
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA-GASF 587 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el-g~~~ 587 (837)
.-|.|.|++|+||||+++.++..+ +..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 468999999999999999999998 4433
No 402
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.40 E-value=0.13 Score=60.23 Aligned_cols=37 Identities=24% Similarity=0.176 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEeccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG----ASFINVSMST 594 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg----~~~i~v~~s~ 594 (837)
.+..|+|.|++|+||||+|++|+..++ .+++.++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345689999999999999999999985 7787777443
No 403
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.38 E-value=0.35 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||||+|||||.+.++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 345568899999999999999999765
No 404
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.32 E-value=0.27 Score=54.28 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=17.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~ 581 (837)
+.+++.+|+|+|||..+-..+.
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 4799999999999995544433
No 405
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.28 E-value=0.23 Score=53.68 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
..+.-+.|.||+|+||||+++.++..++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445688999999999999999998875
No 406
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.26 E-value=0.12 Score=55.33 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+.-+.|.||+|+|||||++.|+..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445688999999999999999999775
No 407
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.22 E-value=0.12 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 408
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.15 E-value=0.25 Score=55.37 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=15.5
Q ss_pred ceEEEEcCCCChHHHHH
Q 003231 560 RGILLFGPPGTGKTMLA 576 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LA 576 (837)
+.+|+.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 57999999999999976
No 409
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.08 E-value=0.65 Score=56.37 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
+...++|.||.|+||||+.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999999864
No 410
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.98 E-value=0.18 Score=51.13 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINV 590 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v 590 (837)
..-|.|.||+|+||||+++.++..+ |.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3458899999999999999999887 4566544
No 411
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=90.87 E-value=0.19 Score=56.68 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 593 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~~s 593 (837)
..+++.+|+|+|||.++-.++...+.+.+.+.+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999999888888777776655
No 412
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.85 E-value=0.11 Score=53.66 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||.|+|||||++.++...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455678999999999999999998654
No 413
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.84 E-value=0.27 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...+.|.|+||+|||+|..++...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999754
No 414
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.76 E-value=0.31 Score=54.05 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA-----GASFINV 590 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el-----g~~~i~v 590 (837)
....++|+||+|+|||+|++.||+.. ++.++.+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 45679999999999999999998865 4445544
No 415
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.60 E-value=0.11 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||+|+|||||++.++...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455679999999999999999998765
No 416
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.56 E-value=0.15 Score=51.89 Aligned_cols=31 Identities=39% Similarity=0.509 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEAGASFINVS 591 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~elg~~~i~v~ 591 (837)
-.|-|+|..|||||++++.++. +|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3588999999999999999998 999987654
No 417
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.55 E-value=0.22 Score=57.23 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=24.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGA 585 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~ 585 (837)
...|+|.|++||||||++++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999999975
No 418
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.47 E-value=0.1 Score=53.37 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||.|+|||||++.++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999998654
No 419
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.44 E-value=0.15 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 003231 561 GILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~elg 584 (837)
-.+|+||.|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998775
No 420
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.40 E-value=0.19 Score=50.19 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
...++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998763
No 421
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.21 E-value=0.14 Score=52.89 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+ ..+.|.||.|+|||||.+.++...
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 678899999999999999999765
No 422
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.16 E-value=0.27 Score=58.70 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-Hh--CCcEEEEec
Q 003231 559 CRGILLFGPPGTGKTMLAKAIAN-EA--GASFINVSM 592 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~-el--g~~~i~v~~ 592 (837)
..++++.||+|+|||+.+-..+- .+ +...+.+.+
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 56899999999999998854332 22 444444443
No 423
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.12 E-value=0.3 Score=49.75 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=26.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGASFI 588 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~~i 588 (837)
..-|.|.|++|+||||+++.++..++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 456899999999999999999999987443
No 424
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.06 E-value=0.13 Score=53.82 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+...+.|.||.|+|||||++.++....
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4556688999999999999999997653
No 425
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.96 E-value=0.66 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
....+.|.|+||+|||+++..++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998765
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.92 E-value=0.32 Score=48.64 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
....++|.|++|+|||+|+..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999875
No 427
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.89 E-value=0.23 Score=50.93 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=19.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el 583 (837)
..-|.|.||+|+||||+++.++..+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4558899999999999999999887
No 428
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.86 E-value=0.14 Score=52.98 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||.|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999999765
No 429
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.74 E-value=0.17 Score=53.16 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
.+...+.|.||.|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45567899999999999999999975
No 430
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.69 E-value=0.17 Score=49.65 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
..+.|.||+|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999754
No 431
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.68 E-value=0.17 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~e 582 (837)
..+.|.||+|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999975
No 432
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.64 E-value=0.21 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
....++|.|++|+|||+|+.+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998764
No 433
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.58 E-value=0.46 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=17.2
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIA 580 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA 580 (837)
.+.+++.+|+|+|||..+-..+
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHHH
Confidence 3569999999999998754443
No 434
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.58 E-value=0.1 Score=59.32 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAG---ASFINVS 591 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg---~~~i~v~ 591 (837)
+..|+|.|.||+|||++++.+|..++ .+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45699999999999999999999874 3444444
No 435
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.57 E-value=0.16 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||.|+|||||++.++...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455679999999999999999999765
No 436
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.43 E-value=0.16 Score=53.33 Aligned_cols=28 Identities=18% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+..-+.|.||.|+|||||++.++....
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4556788999999999999999997653
No 437
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.41 E-value=0.16 Score=53.49 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+...+.|.||.|+|||||++.|+..+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4556789999999999999999997663
No 438
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.39 E-value=0.16 Score=52.70 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
.+...+.|.||.|+|||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999974
No 439
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.35 E-value=0.18 Score=55.33 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||+|||||||.+.||...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345568899999999999999999866
No 440
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.35 E-value=0.29 Score=57.73 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el 583 (837)
.+++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999888776554
No 441
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.33 E-value=0.21 Score=46.65 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
..+++.|++|+|||+|+.+++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998653
No 442
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.33 E-value=0.14 Score=53.40 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+...+.|.||.|+|||||.+.++....
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455688999999999999999987653
No 443
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.31 E-value=0.14 Score=52.18 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||.|+|||||++.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999998754
No 444
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.27 E-value=0.14 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
..+.|.||+|+|||||++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999887
No 445
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.26 E-value=0.5 Score=49.03 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.3
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAI 579 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAral 579 (837)
+.+++.+|+|+|||..+-..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l~ 111 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLIP 111 (262)
T ss_dssp CCCEECCCTTSCHHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHHH
Confidence 46999999999999875443
No 446
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.25 E-value=0.31 Score=54.98 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
..+-.++.|+||||||++...++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 4456889999999999999888753
No 447
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=89.24 E-value=0.64 Score=58.54 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA---GASFINVSM 592 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~ 592 (837)
..+|+.||+|+|||..+...+... +...+.+.+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 579999999999999876655444 555555544
No 448
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.21 E-value=0.15 Score=52.31 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||.|+|||||.+.++..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999999866
No 449
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.20 E-value=0.51 Score=54.75 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA---GASFINVSMSTI 595 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~s~l 595 (837)
+..|+|.|++|+|||++|+.++..+ |.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4568999999999999999999887 456666665443
No 450
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.20 E-value=0.15 Score=52.99 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||+|+|||||++.++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355678999999999999999998765
No 451
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.18 E-value=0.25 Score=52.97 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=49.8
Q ss_pred ccCCCccccccccccccccHHHHHHHHHHHHhhcccccccccccccCC-CCCceEeecChhHHHHHHHHHHhhhhC----
Q 003231 60 VLDGKDIKTTFDEFPYYLSERTRMLLTSAAYVHLKHSEISKHTRNLSP-ASRTILLSGPAELYQQMLAKALAHFFE---- 134 (837)
Q Consensus 60 vv~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~-~~~~ILL~gP~e~yq~~LakALA~~~~---- 134 (837)
-++..--..||++|-+- ...+.....++.-.+. +... ..+.|||+||++.+++.||+|+|++..
T Consensus 113 ~l~~~~~~~tfd~f~~~--~~~~~~~~~~~~~~i~---------~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g 181 (308)
T 2qgz_A 113 SLPKSYRHIHLSDIDVN--NASRMEAFSAILDFVE---------QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG 181 (308)
T ss_dssp SSCGGGGSCCGGGSCCC--SHHHHHHHHHHHHHHH---------HCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHhCCHhhCcCC--ChHHHHHHHHHHHHHH---------hccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 34433345799999764 2122222223222221 1111 257899999999999999999999665
Q ss_pred CeEEEeeccccchhh
Q 003231 135 SKLLLLDVNDFSLKM 149 (837)
Q Consensus 135 a~ll~ld~~~~~~~~ 149 (837)
.+.+.+...+|...+
T Consensus 182 ~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 182 VSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEEHHHHHHHH
T ss_pred CcEEEEEHHHHHHHH
Confidence 677777777766544
No 452
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.10 E-value=0.15 Score=52.60 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+..-+.|.||.|+|||||.+.++....
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455688999999999999999997653
No 453
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.09 E-value=0.18 Score=52.78 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||.|+|||||++.++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999999765
No 454
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.07 E-value=0.36 Score=53.23 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA---GASFINVSM 592 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el---g~~~i~v~~ 592 (837)
...++++.||+|+|||++++.++..+ |..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45689999999999999999998765 667777765
No 455
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.03 E-value=0.18 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||.|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455678899999999999999999765
No 456
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.02 E-value=0.15 Score=53.87 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||.|+|||||++.++...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345568999999999999999999765
No 457
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.99 E-value=0.15 Score=51.63 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...+.|.||.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 458
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.90 E-value=0.17 Score=58.85 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccc
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEAG----ASFINVSMSTI 595 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~elg----~~~i~v~~s~l 595 (837)
+...+.|.|++|+|||||+++||..++ ..+..++...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 456799999999999999999999884 34544555443
No 459
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.90 E-value=0.23 Score=54.44 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGAS 586 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~~ 586 (837)
...+.|.||+|+|||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987654
No 460
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.89 E-value=0.22 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el 583 (837)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999866
No 461
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.81 E-value=0.16 Score=52.82 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+...+.|.||.|+|||||.+.++..+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3456689999999999999999997653
No 462
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.77 E-value=0.16 Score=53.34 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||.|+|||||++.++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678999999999999999999765
No 463
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.75 E-value=0.23 Score=46.62 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
-.+++.|++|+|||+|+.++....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
No 464
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.72 E-value=0.29 Score=46.07 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
+....+++.|++|+|||+|+.++...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999764
No 465
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.65 E-value=0.54 Score=48.86 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~e 582 (837)
+.++|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999764
No 466
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.65 E-value=0.22 Score=54.70 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||+|||||||.+.||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 345568899999999999999999765
No 467
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.61 E-value=0.22 Score=54.75 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||+|||||||.+.||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345568899999999999999999765
No 468
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.59 E-value=0.25 Score=48.47 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~e 582 (837)
.....|++.|++|+|||+|+.++...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999764
No 469
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.55 E-value=0.24 Score=46.09 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el 583 (837)
.+++.|++|+|||+|+.+++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 470
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.52 E-value=0.23 Score=55.04 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||+|||||||.+.||...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 345568899999999999999999766
No 471
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.45 E-value=0.23 Score=47.23 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~e 582 (837)
..+.|.|++|+|||+|.++++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 472
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.45 E-value=0.25 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
-.+++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 473
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.44 E-value=0.18 Score=53.47 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
.+...+.|.||.|+|||||++.++..+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3455688999999999999999997653
No 474
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.41 E-value=0.2 Score=54.90 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||+|||||||.+.||...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 345568899999999999999999765
No 475
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.39 E-value=0.19 Score=48.71 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 003231 561 GILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~ 581 (837)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 476
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.38 E-value=1 Score=49.59 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 003231 561 GILLFGPPGTGKTMLAKAIANEA----GASFINVSMS 593 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~el----g~~~i~v~~s 593 (837)
++++.+|+|+|||..+-.++... +..++.+.+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999998887665 5666666554
No 477
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.37 E-value=0.24 Score=54.77 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||+|||||||.+.||...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345568899999999999999999765
No 478
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.30 E-value=0.25 Score=46.15 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
..+++.|++|+|||+|+.++...-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999998643
No 479
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.28 E-value=0.21 Score=54.81 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
+..-+.|.||+|||||||.+.||...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45568899999999999999999765
No 480
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.26 E-value=0.18 Score=52.52 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+...+.|.||.|+|||||.+.++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999765
No 481
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.19 E-value=1 Score=57.74 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEAG 584 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~elg 584 (837)
++...+.|+||+|+|||||++.+...+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 5677899999999999999999998873
No 482
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.13 E-value=0.25 Score=46.81 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~e 582 (837)
..+++.|++|+|||+|++++...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999753
No 483
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.09 E-value=0.31 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el 583 (837)
+.-|.|.||+|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999887
No 484
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.02 E-value=0.29 Score=45.91 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
-.+++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 485
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.95 E-value=0.21 Score=48.43 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=30.5
Q ss_pred CCceEeecChhHHHHHHHHHHhhhhCCeEEEeec
Q 003231 109 SRTILLSGPAELYQQMLAKALAHFFESKLLLLDV 142 (837)
Q Consensus 109 ~~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~ 142 (837)
.+.|+|.||++.++.+++|+||+.+|.+++-.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 5679999999999999999999999999876664
No 486
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=87.92 E-value=0.67 Score=55.94 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...++|.||.|+||||+.|.+|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 356899999999999999999864
No 487
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.83 E-value=0.27 Score=46.74 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
+...+++.|++|+|||+|+.++....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34579999999999999999998643
No 488
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.79 E-value=0.28 Score=46.05 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~e 582 (837)
..+++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
No 489
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.78 E-value=0.28 Score=46.04 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003231 560 RGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~el 583 (837)
-.+++.|++|+|||+|++++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 490
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.74 E-value=0.24 Score=54.76 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
+..-+.|.||+|||||||.+.||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45568899999999999999999765
No 491
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.68 E-value=0.35 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 003231 558 PCRGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 558 p~~~iLL~GPpGtGKT~LAralA~ 581 (837)
....|++.|++|+|||+|+.++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455799999999999999999975
No 492
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.66 E-value=2.1 Score=44.16 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~el 583 (837)
...|++.|++|+|||+|+.++...-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998643
No 493
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.62 E-value=0.3 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~e 582 (837)
...++|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 494
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.62 E-value=0.31 Score=46.29 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~e 582 (837)
..+++.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 495
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.54 E-value=0.24 Score=47.61 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=31.9
Q ss_pred CceEeecChhHHHHHHHHHHhhhhCCeEEEeecccc
Q 003231 110 RTILLSGPAELYQQMLAKALAHFFESKLLLLDVNDF 145 (837)
Q Consensus 110 ~~ILL~gP~e~yq~~LakALA~~~~a~ll~ld~~~~ 145 (837)
.-|+|+||++.++.+++|+||+.++.+++.+|...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 569999999999999999999999999888776554
No 496
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.52 E-value=0.36 Score=49.39 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 003231 559 CRGILLFGPPGTGKTMLAKAIANEAGA 585 (837)
Q Consensus 559 ~~~iLL~GPpGtGKT~LAralA~elg~ 585 (837)
+.-|.|.|++|+|||++++.++..++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456889999999999999999987644
No 497
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.52 E-value=0.28 Score=54.46 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 003231 557 KPCRGILLFGPPGTGKTMLAKAIANEA 583 (837)
Q Consensus 557 ~p~~~iLL~GPpGtGKT~LAralA~el 583 (837)
.+..-+.|.||+|||||||.+.||...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 455679999999999999999999754
No 498
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.48 E-value=0.3 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIANE 582 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~e 582 (837)
-.+++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 499
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.47 E-value=0.29 Score=46.11 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 003231 561 GILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 561 ~iLL~GPpGtGKT~LAralA~ 581 (837)
.+++.|++|+|||+|+.++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999963
No 500
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=87.43 E-value=0.67 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 003231 560 RGILLFGPPGTGKTMLAKAIAN 581 (837)
Q Consensus 560 ~~iLL~GPpGtGKT~LAralA~ 581 (837)
..++|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4599999999999999999975
Done!