BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003233
         (837 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
            (isolate 3D7) GN=PF11_0240 PE=3 SV=1
          Length = 5251

 Score = 36.6 bits (83), Expect = 0.78,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 10/158 (6%)

Query: 14   ENGDAGEPEESKIASEESKSRNAEAEFGKSQTVETPDQVPTDNDDHAASENPGLDE---- 69
            +N +  +  E     E++  +N E E    +  E    V  + +D  A E    DE    
Sbjct: 4123 KNTEDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEKNTEDEKAIEKNTEDEKAVE 4182

Query: 70   --IEETKMLANEVNEVKEVSDSVYESR--EQVTEEAEVEESQTVEKPNQVPPNHGDNDDA 125
               E+ K +     + K V ++  + +  E+ TE+ +  E  T ++  +V     +++  
Sbjct: 4183 KNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTEDEKAVEKNTEDE--KVVEEKIEDEKG 4240

Query: 126  ERQRATLENTGSDEAEETKIVSNAVDETKDQVSKETAE 163
            E Q+A  EN G +E E+ +I    V E K +    T E
Sbjct: 4241 EEQKAEEENVGIEEVEKVQIDDYKVSEKKGENKNCTYE 4278



 Score = 35.8 bits (81), Expect = 1.5,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 15/178 (8%)

Query: 180  NFEHAQKESVAVENRNADEVNEIKEASDATYESNERDIGESAGEIPTVEKLDQAPPANSV 239
            N E  +   +  E+  A E N   E +      +E+ I ++  +   VEK  +   A   
Sbjct: 4104 NTEDEKAIEINTEDEKAVEKNTEDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEK 4163

Query: 240  PMQYSNAEEVGESKIESVLAS----KSKDQSTEDIDVTGKNTTEEKPDAENTEEACKAAS 295
              +   A E      ++V  +    K+ +Q+TED  V  +NT +EK   +NTE+      
Sbjct: 4164 NTEDEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTED------ 4217

Query: 296  DYRAQAIEPVTENEITTDQTPSAEKTSAPMAPKHETTVTVEEIEEEKQQKVEKLEDEG 353
                +A+E  TE+E   ++    EK     A   E  V +EE+E+ +    +  E +G
Sbjct: 4218 ---EKAVEKNTEDEKVVEEKIEDEKGEEQKA--EEENVGIEEVEKVQIDDYKVSEKKG 4270


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.297    0.118    0.305 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,073,149
Number of Sequences: 539616
Number of extensions: 13409460
Number of successful extensions: 46649
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 2544
Number of HSP's that attempted gapping in prelim test: 37416
Number of HSP's gapped (non-prelim): 8328
length of query: 837
length of database: 191,569,459
effective HSP length: 126
effective length of query: 711
effective length of database: 123,577,843
effective search space: 87863846373
effective search space used: 87863846373
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 66 (30.0 bits)