Query 003233
Match_columns 837
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 18:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kjf_A Carnocyclin-A; circular 5.0 1.7E+02 0.0058 24.2 0.3 19 806-824 38-58 (60)
2 2cu1_A Mitogen-activated prote 3.9 1.8E+02 0.0062 26.5 -0.4 27 700-726 12-38 (103)
3 4gif_A Polycystic kidney disea 2.9 2.2E+02 0.0075 22.8 -0.7 18 804-821 21-38 (45)
4 3hrn_A Transient receptor pote 2.5 2.9E+02 0.01 23.4 -0.5 19 803-821 19-37 (64)
5 1dum_A Magainin 2; antibiotic, 2.5 4.8E+02 0.016 18.8 0.7 19 808-827 1-19 (26)
6 3te3_A Polycystic kidney disea 2.4 1.8E+02 0.0061 22.6 -1.7 18 804-821 21-38 (39)
7 3l4h_A E3 ubiquitin-protein li 2.2 5.9E+02 0.02 23.0 1.0 13 810-822 33-45 (109)
8 3l4f_A RHO guanine nucleotide 1.8 7.9E+02 0.027 20.7 1.1 17 84-100 3-19 (61)
9 2kfe_A Meucin-24; alpha-helix, 1.8 6.9E+02 0.024 18.2 0.6 16 809-824 6-21 (26)
10 1uhu_A Product of riken cDNA 3 1.8 1.2E+03 0.043 21.2 2.4 24 810-833 55-80 (105)
No 1
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=4.97 E-value=1.7e+02 Score=24.16 Aligned_cols=19 Identities=63% Similarity=0.758 Sum_probs=14.1
Q ss_pred cccccchhhhhHHh--hhhhh
Q 003233 806 LSGVGSKVKHSISK--VKKAI 824 (837)
Q Consensus 806 LSGVGSKVKhsiaK--VKKai 824 (837)
||||=..||..|+| +||||
T Consensus 38 lsgvftavkaaiakqgikkai 58 (60)
T 2kjf_A 38 LSGVFTAVKAAIAKQGIKKAI 58 (60)
T ss_dssp THHHHHHHHHHHHHTCHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHh
Confidence 56666778888887 67776
No 2
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=3.89 E-value=1.8e+02 Score=26.54 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=24.4
Q ss_pred cccccccchhccccccccccchhhhhh
Q 003233 700 SGERKTEKSALMDSATASLTDPLQSSR 726 (837)
Q Consensus 700 ~~e~k~Eksm~~~sa~~SL~D~mQ~S~ 726 (837)
.+||++||-+..+.-.+++.|++|.-.
T Consensus 12 KfE~~GEkRIi~f~RPv~f~eL~~Kv~ 38 (103)
T 2cu1_A 12 KFEHRGEKRILQFPRPVKLEDLRSKAK 38 (103)
T ss_dssp EEEETTEEEEEEEESSCCHHHHHHHHH
T ss_pred EEEecCeEEEEeccCCccHHHHHHHHH
Confidence 799999999999999999999988643
No 3
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=2.95 E-value=2.2e+02 Score=22.75 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=15.2
Q ss_pred cccccccchhhhhHHhhh
Q 003233 804 NILSGVGSKVKHSISKVK 821 (837)
Q Consensus 804 niLSGVGSKVKhsiaKVK 821 (837)
+.|+||.|+|-+-.+|++
T Consensus 21 ~~l~gI~S~idav~~Kl~ 38 (45)
T 4gif_A 21 TVLEGVVSQIDAVGSKLK 38 (45)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568899999999888886
No 4
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=2.50 E-value=2.9e+02 Score=23.44 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.7
Q ss_pred ccccccccchhhhhHHhhh
Q 003233 803 HNILSGVGSKVKHSISKVK 821 (837)
Q Consensus 803 hniLSGVGSKVKhsiaKVK 821 (837)
-+.|+||.|+|-+-++|++
T Consensus 19 E~sl~gI~SqIDaV~~KL~ 37 (64)
T 3hrn_A 19 EHSIGSIVSKIDAVIVKLE 37 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3568899999999888875
No 5
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=2.49 E-value=4.8e+02 Score=18.78 Aligned_cols=19 Identities=47% Similarity=0.660 Sum_probs=13.9
Q ss_pred cccchhhhhHHhhhhhhcCC
Q 003233 808 GVGSKVKHSISKVKKAITGK 827 (837)
Q Consensus 808 GVGSKVKhsiaKVKKai~GK 827 (837)
|+| |--||-.|.-||.+|.
T Consensus 1 gig-kylhsakkfgkawvge 19 (26)
T 1dum_A 1 GIG-KYLHSAKKFGKAWVGE 19 (26)
T ss_dssp CCS-STTTTHHHHHHHHHHH
T ss_pred Chh-HHHHHHHHHhHHHHHH
Confidence 444 4568989999988773
No 6
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=2.42 E-value=1.8e+02 Score=22.64 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=11.4
Q ss_pred cccccccchhhhhHHhhh
Q 003233 804 NILSGVGSKVKHSISKVK 821 (837)
Q Consensus 804 niLSGVGSKVKhsiaKVK 821 (837)
+.|+||.|+|-+-.+|++
T Consensus 21 ~~l~gI~S~idav~~Kl~ 38 (39)
T 3te3_A 21 TVLEGVVSQIDAVGSKLK 38 (39)
T ss_dssp HHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 567788888877777764
No 7
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=2.21 E-value=5.9e+02 Score=23.04 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=10.8
Q ss_pred cchhhhhHHhhhh
Q 003233 810 GSKVKHSISKVKK 822 (837)
Q Consensus 810 GSKVKhsiaKVKK 822 (837)
-|-|||-|+||++
T Consensus 33 ~~~~k~~i~~irr 45 (109)
T 3l4h_A 33 STCLKHMILKVRR 45 (109)
T ss_dssp CSHHHHHHHHHHH
T ss_pred chHHHHHHHHHhc
Confidence 3678999999986
No 8
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=1.81 E-value=7.9e+02 Score=20.66 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=13.1
Q ss_pred hhchhhHhhhhhhhhhh
Q 003233 84 KEVSDSVYESREQVTEE 100 (837)
Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (837)
|-+.|.||..|.+|.+-
T Consensus 3 kSLVDtVYalkDev~eL 19 (61)
T 3l4f_A 3 KSLVDTVYALKDEVQEL 19 (61)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34678999999988764
No 9
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=1.78 E-value=6.9e+02 Score=18.21 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=10.7
Q ss_pred ccchhhhhHHhhhhhh
Q 003233 809 VGSKVKHSISKVKKAI 824 (837)
Q Consensus 809 VGSKVKhsiaKVKKai 824 (837)
|+.|||.-|++||.-|
T Consensus 6 i~~kiK~kl~~akdK~ 21 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKM 21 (26)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567777777776544
No 10
>1uhu_A Product of riken cDNA 3110009E22; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.61.1.6
Probab=1.76 E-value=1.2e+03 Score=21.20 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=19.3
Q ss_pred cchhhhhHHhhhhhh--cCCCCCCCC
Q 003233 810 GSKVKHSISKVKKAI--TGKSSHPKQ 833 (837)
Q Consensus 810 GSKVKhsiaKVKKai--~GK~~h~K~ 833 (837)
|+-=..-|..||..| .|..|||-+
T Consensus 55 GTfn~~iI~qV~~~VF~~gp~gHPDQ 80 (105)
T 1uhu_A 55 GTFDLTVIFEVKAIVFQDGPGSHPDQ 80 (105)
T ss_dssp CCCCHHHHHHHHHHHTCSSTTSCTTT
T ss_pred CcccHHHHHHHHHHhccCCCCCCCcc
Confidence 777777889999888 588889865
Done!