BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003235
(837 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 62 FSDIIVHVMGSTYHLHRLILS-RSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMA 120
F+D + V G + H+ IL+ RS F M +E+ V ++ +V E
Sbjct: 174 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN----DVEPEVFKEM 229
Query: 121 LAYLY-GHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAE 176
+ ++Y G P L D A +LAAA L+ L +C D + S L N + A+
Sbjct: 230 MCFIYTGKAPNL-DKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILAD 285
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 60 GSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAM 119
G D V G + H+ +L+ S + ML K+ +H+D N G +
Sbjct: 23 GLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD------VVHLDISNAAG--LGQ 74
Query: 120 ALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAIC 155
L ++Y + L+ N VLA A+FL +QD+ C
Sbjct: 75 VLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITAC 110
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 60 GSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAM 119
G D V G + H+ +L+ S + ML K+ +H+D N G +
Sbjct: 25 GLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD------VVHLDISNAAG--LGQ 76
Query: 120 ALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAIC 155
L ++Y + L+ N VLA A+FL +QD+ C
Sbjct: 77 VLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITAC 112
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 37.4 bits (85), Expect = 0.033, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 57 FNSGSFSDIIVHVMGSTYHLHRLILS-RSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGE 115
+ + F+D + V G + H+ IL+ RS F M +E+ V ++ +V E
Sbjct: 20 WENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN----DVEPE 75
Query: 116 AIAMALAYLY-GHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVF 174
+ ++Y G P L D A +LAAA L+ L +C D + S L N +
Sbjct: 76 VFKEMMCFIYTGKAPNL-DKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 134
Query: 175 AE 176
A+
Sbjct: 135 AD 136
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 60 GSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNV------ 112
G D+++ V G + HR +L+ S YF+ + S VV D +NV
Sbjct: 33 GLLCDVVILVEGREFPTHRSVLAACSQYFKKLF------TSGAVV----DQQNVYEIDFV 82
Query: 113 NGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFI 159
+ EA+ + + Y ++ AN +L+AA L++ + +C D +
Sbjct: 83 SAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 129
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 60 GSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNV------ 112
G D+++ V G + HR +L+ S YF+ + S VV D +NV
Sbjct: 23 GLLCDVVILVEGREFPTHRSVLAACSQYFKKLF------TSGAVV----DQQNVYEIDFV 72
Query: 113 NGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFI 159
+ EA+ + + Y ++ AN +L+AA L++ + +C D +
Sbjct: 73 SAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
>pdb|4H53|A Chain A, Influenza N2-tyr406asp Neuraminidase In Complex With
Beta-neu5ac
pdb|4H53|B Chain B, Influenza N2-tyr406asp Neuraminidase In Complex With
Beta-neu5ac
pdb|4H53|C Chain C, Influenza N2-tyr406asp Neuraminidase In Complex With
Beta-neu5ac
pdb|4H53|D Chain D, Influenza N2-tyr406asp Neuraminidase In Complex With
Beta-neu5ac
Length = 388
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 66 IVHVM---GSTYHLHRL-ILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMAL 121
IVH+ GS H+ R R + D+WK ++ PVV ++++D +++ + L
Sbjct: 181 IVHISPLSGSAQHIEECSCYPRYPGVRCICRDNWKGSNRPVVDINMEDYSIDSSYVCSGL 240
Query: 122 AYLYGHRPKLNDANA 136
G P+ +D+++
Sbjct: 241 V---GDTPRNDDSSS 252
>pdb|4H52|A Chain A, Wild-type Influenza N2 Neuraminidase Covalent Complex With
3-fluoro- Neu5ac
pdb|4H52|B Chain B, Wild-type Influenza N2 Neuraminidase Covalent Complex With
3-fluoro- Neu5ac
Length = 388
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 66 IVHVM---GSTYHLHRL-ILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMAL 121
IVH+ GS H+ R R + D+WK ++ PVV ++++D +++ + L
Sbjct: 181 IVHISPLSGSAQHIEECSCYPRYPGVRCICRDNWKGSNRPVVDINMEDYSIDSSYVCSGL 240
Query: 122 AYLYGHRPKLNDANA 136
G P+ +D+++
Sbjct: 241 V---GDTPRNDDSSS 252
>pdb|2AEP|A Chain A, An Epidemiologically Significant Epitope Of A 1998
Influenza Virus Neuraminidase Forms A Highly Hydrated
Interface In The Na-Antibody Complex.
pdb|2AEQ|A Chain A, An Epidemiologically Significant Epitope Of A 1998
Influenza Virus Neuraminidase Forms A Highly Hydrated
Interface In The Na-Antibody Complex
Length = 395
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 66 IVHVM---GSTYHLHRL-ILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMAL 121
IVH+ GS H+ R R + D+WK ++ P+V ++V D ++ + L
Sbjct: 188 IVHISPLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINVKDYSIVSSYVCSGL 247
Query: 122 AYLYGHRPKLNDANA 136
G P+ ND+++
Sbjct: 248 V---GDTPRKNDSSS 259
>pdb|3TIA|A Chain A, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir
pdb|3TIA|B Chain B, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir
pdb|3TIA|C Chain C, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir
pdb|3TIA|D Chain D, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir
pdb|3TIB|A Chain A, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TIB|B Chain B, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TIB|C Chain C, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TIB|D Chain D, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TIC|A Chain A, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Zanamivir
pdb|3TIC|B Chain B, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Zanamivir
pdb|3TIC|C Chain C, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Zanamivir
pdb|3TIC|D Chain D, Crystal Structure Of 1957 Pandemic H2n2 Neuraminidase
Complexed With Zanamivir
Length = 469
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 66 IVHVM---GSTYHLHRL-ILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMAL 121
IVH+ GS H+ R R + D+WK ++ PVV ++++D +++ + L
Sbjct: 262 IVHISPLSGSAQHIEECSCYPRYPGVRCICRDNWKGSNRPVVDINMEDYSIDSSYVCSGL 321
Query: 122 AYLYGHRPKLNDANA 136
G P+ +D+++
Sbjct: 322 V---GDTPRNDDSSS 333
>pdb|4GZS|A Chain A, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Hepes
pdb|4GZS|B Chain B, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Hepes
pdb|4GZS|C Chain C, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Hepes
pdb|4GZS|D Chain D, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Hepes
pdb|4GZT|A Chain A, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Oseltamivir Carboxylate
pdb|4GZT|B Chain B, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Oseltamivir Carboxylate
pdb|4GZT|C Chain C, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Oseltamivir Carboxylate
pdb|4GZT|D Chain D, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Oseltamivir Carboxylate
pdb|4GZW|A Chain A, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Avian Sialic Acid Receptor
pdb|4GZW|B Chain B, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Avian Sialic Acid Receptor
pdb|4GZW|C Chain C, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Avian Sialic Acid Receptor
pdb|4GZW|D Chain D, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Avian Sialic Acid Receptor
pdb|4GZX|A Chain A, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Human Sialic Acid Receptor
pdb|4GZX|B Chain B, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Human Sialic Acid Receptor
pdb|4GZX|C Chain C, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Human Sialic Acid Receptor
pdb|4GZX|D Chain D, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Human Sialic Acid Receptor
Length = 393
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 66 IVH---VMGSTYHLHRL-ILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMAL 121
IVH + GS H+ R R + D+WK ++ P+V +++ D ++ + L
Sbjct: 186 IVHTSTLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINIKDHSIVSSYVCSGL 245
Query: 122 AYLYGHRPKLNDANA 136
G P+ ND+++
Sbjct: 246 V---GDTPRKNDSSS 257
>pdb|4GZO|A Chain A, N2 Neuraminidase Of ATANZANIA2052010 H3N2 IN COMPLEX WITH
HEPES
pdb|4GZP|A Chain A, N2 Neuraminidase Of ATANZANIA2052010 H3N2 IN COMPLEX WITH
Oseltamivir Carboxylate
pdb|4GZQ|A Chain A, N2 Neuraminidase Of ATANZANIA2052010 H3N2 IN COMPLEX WITH
SIALIC Acid
Length = 393
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 66 IVH---VMGSTYHLHRL-ILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMAL 121
IVH + GS H+ R R + D+WK ++ P+V +++ D ++ + L
Sbjct: 186 IVHTSTLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINIKDHSIVSSYVCSGL 245
Query: 122 AYLYGHRPKLNDANA 136
G P+ ND+++
Sbjct: 246 V---GDTPRKNDSSS 257
>pdb|1INH|A Chain A, Influenza A Subtype N2 Neuraminidase Complexed With
Aromatic Bana111 Inhibitor
pdb|1INH|B Chain B, Influenza A Subtype N2 Neuraminidase Complexed With
Aromatic Bana111 Inhibitor
pdb|1ING|A Chain A, Influenza A Subtype N2 Neuraminidase Complexed With
Aromatic Bana109 Inhibitor
pdb|1ING|B Chain B, Influenza A Subtype N2 Neuraminidase Complexed With
Aromatic Bana109 Inhibitor
pdb|1INW|A Chain A, A Sialic Acid Derived Phosphonate Analog Inhibits
Different Strains Of Influenza Virus Neuraminidase With
Different Efficiencies
pdb|1INX|A Chain A, A Sialic Acid Derived Phosphonate Analog Inhibits
Different Strains Of Influenza Virus Neuraminidase With
Different Efficiencies
pdb|1IVC|A Chain A, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1IVC|B Chain B, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1IVD|A Chain A, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1IVD|B Chain B, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1IVE|A Chain A, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1IVE|B Chain B, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1IVF|A Chain A, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1IVF|B Chain B, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1IVG|A Chain A, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1IVG|B Chain B, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
pdb|1NN2|A Chain A, Three-Dimensional Structure Of The Neuraminidase Of
Influenza Virus A(Slash)tokyo(Slash)3(Slash)67 At 2.2
Angstroms Resolution
Length = 388
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 66 IVHV---MGSTYHLHRL-ILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMAL 121
IVH+ GS H+ R R + D+WK ++ PVV ++++D +++ + L
Sbjct: 181 IVHISPLAGSAQHVEECSCYPRYPGVRCICRDNWKGSNRPVVDINMEDYSIDSSYVCSGL 240
Query: 122 AYLYGHRPKLNDANA 136
G P+ +D ++
Sbjct: 241 V---GDTPRNDDRSS 252
>pdb|2BAT|A Chain A, The Structure Of The Complex Between Influenza Virus
Neuraminidase And Sialic Acid, The Viral Receptor
Length = 388
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 66 IVHV---MGSTYHLHRL-ILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMAL 121
IVH+ GS H+ R R + D+WK ++ PVV ++++D +++ + L
Sbjct: 181 IVHISPLAGSAQHVEECSCYPRYPGVRCICRDNWKGSNRPVVDINMEDYSIDSSYVCSGL 240
Query: 122 AYLYGHRPKLNDANA 136
G P+ +D ++
Sbjct: 241 V---GDTPRNDDRSS 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,620,517
Number of Sequences: 62578
Number of extensions: 1012452
Number of successful extensions: 2102
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2093
Number of HSP's gapped (non-prelim): 20
length of query: 837
length of database: 14,973,337
effective HSP length: 107
effective length of query: 730
effective length of database: 8,277,491
effective search space: 6042568430
effective search space used: 6042568430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)