Query 003235
Match_columns 837
No_of_seqs 326 out of 1902
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 19:37:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 5.3E-32 1.1E-36 311.7 18.2 187 51-247 14-205 (557)
2 KOG4441 Proteins containing BT 100.0 3E-32 6.6E-37 314.6 15.1 223 44-274 18-244 (571)
3 PHA02790 Kelch-like protein; P 100.0 1.4E-31 3.1E-36 302.8 15.1 180 53-243 13-196 (480)
4 PHA03098 kelch-like protein; P 100.0 1.6E-30 3.4E-35 295.3 17.0 179 57-247 4-186 (534)
5 KOG4682 Uncharacterized conser 99.9 1.2E-22 2.6E-27 220.8 15.5 213 37-258 44-258 (488)
6 KOG4350 Uncharacterized conser 99.9 3.9E-23 8.5E-28 224.2 10.9 183 53-244 35-222 (620)
7 KOG2075 Topoisomerase TOP1-int 99.8 1.8E-18 4E-23 192.0 14.5 185 52-245 104-298 (521)
8 PF00651 BTB: BTB/POZ domain; 99.7 1.5E-16 3.3E-21 143.5 7.8 105 54-162 2-110 (111)
9 KOG4591 Uncharacterized conser 99.6 1.2E-14 2.6E-19 147.4 10.0 163 52-225 56-224 (280)
10 smart00225 BTB Broad-Complex, 99.5 2.6E-14 5.6E-19 121.3 8.3 89 64-156 1-90 (90)
11 KOG0783 Uncharacterized conser 99.4 1.1E-12 2.5E-17 152.3 8.5 150 60-217 708-866 (1267)
12 PF07707 BACK: BTB And C-termi 98.9 5.9E-10 1.3E-14 100.0 3.4 74 168-245 1-75 (103)
13 smart00875 BACK BTB And C-term 98.8 4.3E-09 9.3E-14 93.1 6.2 73 168-244 1-74 (101)
14 KOG0783 Uncharacterized conser 98.1 1.1E-05 2.3E-10 95.7 8.9 95 59-155 555-681 (1267)
15 KOG0511 Ankyrin repeat protein 98.0 9E-06 1.9E-10 89.9 6.9 131 72-210 301-442 (516)
16 PF02214 BTB_2: BTB/POZ domain 97.3 0.00056 1.2E-08 61.6 6.5 86 65-155 1-94 (94)
17 KOG2716 Polymerase delta-inter 97.2 0.0016 3.6E-08 68.9 10.2 93 65-162 7-104 (230)
18 KOG2838 Uncharacterized conser 96.9 0.00085 1.8E-08 72.2 3.8 95 73-170 262-395 (401)
19 PF11822 DUF3342: Domain of un 96.7 0.0018 3.9E-08 71.4 5.1 89 72-163 14-104 (317)
20 KOG2838 Uncharacterized conser 96.6 0.0023 4.9E-08 69.0 5.0 97 52-150 120-220 (401)
21 cd00121 MATH MATH (meprin and 96.5 0.045 9.7E-07 49.4 12.0 110 711-834 13-125 (126)
22 smart00512 Skp1 Found in Skp1 96.4 0.011 2.4E-07 54.7 7.2 80 65-148 4-104 (104)
23 KOG1987 Speckle-type POZ prote 96.3 0.0022 4.8E-08 68.7 2.6 119 71-197 109-231 (297)
24 KOG3473 RNA polymerase II tran 95.8 0.041 8.9E-07 51.5 7.9 80 65-148 19-112 (112)
25 KOG1724 SCF ubiquitin ligase, 95.7 0.05 1.1E-06 55.2 8.9 99 70-172 13-136 (162)
26 cd03772 MATH_HAUSP Herpesvirus 94.7 0.35 7.7E-06 46.5 11.0 124 698-835 3-131 (137)
27 PF03931 Skp1_POZ: Skp1 family 94.0 0.22 4.9E-06 42.3 7.2 56 65-126 3-59 (62)
28 cd03773 MATH_TRIM37 Tripartite 94.0 1.2 2.6E-05 42.2 12.8 121 696-835 2-130 (132)
29 KOG2714 SETA binding protein S 93.7 0.22 4.8E-06 57.0 8.3 84 65-153 13-102 (465)
30 PF00917 MATH: MATH domain; I 92.9 0.35 7.7E-06 43.9 7.1 115 704-835 1-118 (119)
31 KOG1665 AFH1-interacting prote 92.8 0.39 8.5E-06 51.2 8.0 88 65-157 11-105 (302)
32 COG5201 SKP1 SCF ubiquitin lig 92.1 0.68 1.5E-05 45.7 8.1 98 65-168 4-127 (158)
33 smart00061 MATH meprin and TRA 88.7 1.9 4E-05 37.5 7.3 44 702-752 4-47 (95)
34 PF01466 Skp1: Skp1 family, di 87.2 1.1 2.3E-05 39.9 4.9 43 130-172 10-52 (78)
35 KOG2715 Uncharacterized conser 85.2 5.9 0.00013 40.9 9.4 95 64-162 22-121 (210)
36 cd03774 MATH_SPOP Speckle-type 84.8 14 0.0003 35.6 11.6 123 696-836 3-136 (139)
37 cd03775 MATH_Ubp21p Ubiquitin- 79.8 29 0.00063 33.4 11.7 122 699-835 2-134 (134)
38 KOG0511 Ankyrin repeat protein 77.8 1.8 3.9E-05 49.3 3.1 87 62-154 149-237 (516)
39 cd00270 MATH_TRAF_C Tumor Necr 68.3 44 0.00095 32.3 9.9 31 804-834 116-148 (149)
40 KOG3840 Uncharaterized conserv 67.0 10 0.00022 42.5 5.6 88 59-149 92-185 (438)
41 KOG1778 CREB binding protein/P 66.9 2.3 4.9E-05 47.7 0.7 127 64-199 28-158 (319)
42 KOG2723 Uncharacterized conser 57.8 29 0.00063 37.3 6.9 94 61-159 6-106 (221)
43 cd03776 MATH_TRAF6 Tumor Necro 42.7 2.2E+02 0.0048 27.8 9.9 32 804-835 114-147 (147)
44 PHA03098 kelch-like protein; P 42.2 73 0.0016 37.3 7.7 90 130-219 104-211 (534)
45 PF11822 DUF3342: Domain of un 30.6 29 0.00063 39.1 1.8 59 162-224 71-134 (317)
46 cd01279 HTH_HspR-like Helix-Tu 30.0 99 0.0022 28.7 5.0 51 437-487 33-86 (98)
47 cd01524 RHOD_Pyr_redox Member 27.6 96 0.0021 27.3 4.3 57 415-472 27-85 (90)
48 PHA02790 Kelch-like protein; P 26.1 1.1E+02 0.0024 35.9 5.6 34 130-163 119-152 (480)
49 cd01444 GlpE_ST GlpE sulfurtra 24.2 1.1E+02 0.0024 26.7 4.1 65 407-472 18-91 (96)
50 KOG4350 Uncharacterized conser 22.6 78 0.0017 37.1 3.4 71 84-162 93-176 (620)
51 COG2221 DsrA Dissimilatory sul 22.6 1.4E+02 0.003 33.9 5.3 69 405-473 19-102 (317)
52 PF00651 BTB: BTB/POZ domain; 22.5 2E+02 0.0044 25.6 5.5 32 163-198 78-110 (111)
53 PF07707 BACK: BTB And C-termi 21.8 1.1E+02 0.0025 27.1 3.7 27 137-163 2-28 (103)
54 cd03771 MATH_Meprin Meprin fam 21.5 4.5E+02 0.0097 27.1 8.3 124 709-834 17-166 (167)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.98 E-value=5.3e-32 Score=311.71 Aligned_cols=187 Identities=16% Similarity=0.216 Sum_probs=174.9
Q ss_pred HHHHhcccCCCCCcEEEEEc-CeEEEEehhhhcc-CHHHHHhhccccccCC-CCEEEeecCCCCCCHHHHHHHHHHHhcC
Q 003235 51 HIQMEGFNSGSFSDIIVHVM-GSTYHLHRLILSR-SSYFRNMLHDHWKEAS-APVVTLHVDDKNVNGEAIAMALAYLYGH 127 (837)
Q Consensus 51 ~v~lklf~ng~fSDVtLvV~-G~~f~AHRvILAA-S~YFraMFss~~kES~-~~eI~L~I~d~dVs~eaF~~LLeFIYTG 127 (837)
..+.++++++.+|||+|.++ |++|+|||+|||+ |+||++||+++|+|+. .++|+|+ ++++++|+.+|+|+|||
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~----~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ----MFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec----cCCHHHHHHHHHHhcCC
Confidence 34678899999999999997 8999999999996 9999999999999874 7899998 99999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccccccc
Q 003235 128 RPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKEV 206 (837)
Q Consensus 128 eL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sEe 206 (837)
+ ++.+|+++||.+|++|+++.|++.|++||.++++++||+.++.+|..+.+ ..|.+.|.+||++|| ++.++++
T Consensus 90 ~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~----~~L~~~a~~~i~~~f~~v~~~~e 163 (557)
T PHA02713 90 H--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSH----IPIVKYIKRMLMSNIPTLITTDA 163 (557)
T ss_pred C--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHhCChh
Confidence 7 68999999999999999999999999999999999999999998888776 679999999999998 8999999
Q ss_pred cCCCCHHHHHHhccCCC-CCCCCHHHHHHHHHHHHHHhCccc
Q 003235 207 LPKLSPQTLHALLTSDE-LWVPSEEQRFELALYAFLAKGAFC 247 (837)
Q Consensus 207 FleLS~e~L~eLLSSD~-L~V~SEeeVFeAVlrWI~~d~~~l 247 (837)
|++|+.+.|.+||++|+ |+|.+|++||+|+++|++|+...+
T Consensus 164 f~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r 205 (557)
T PHA02713 164 FKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITE 205 (557)
T ss_pred hhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999988 799999999999999999986443
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=3e-32 Score=314.59 Aligned_cols=223 Identities=25% Similarity=0.277 Sum_probs=199.9
Q ss_pred chhhhhhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHH
Q 003235 44 NLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALA 122 (837)
Q Consensus 44 ~l~sLl~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLe 122 (837)
.+...+...+..+++.+.+|||++.+++++|+|||+|||+ |+||++||+++++|+.+.+|+|. ++++.+++.+|+
T Consensus 18 ~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~----~v~~~~l~~ll~ 93 (571)
T KOG4441|consen 18 SHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE----GVDPETLELLLD 93 (571)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe----cCCHHHHHHHHH
Confidence 3344444457788899999999999999999999999996 99999999999999999999999 899999999999
Q ss_pred HHhcCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-cc
Q 003235 123 YLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AV 201 (837)
Q Consensus 123 FIYTGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV 201 (837)
|+||+++.|+.+|+++|+.+|++|||+.+.+.|.+||.++++++||+.|..+|+.|++ .+|.+.+..||.+|| ++
T Consensus 94 y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~----~~L~~~a~~~i~~~F~~v 169 (571)
T KOG4441|consen 94 YAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSC----TELLEVADEYILQHFAEV 169 (571)
T ss_pred HhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999998 89
Q ss_pred ccccccCCCCHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhCccccccCCCCC--CCCCCCCcccccccchhhH
Q 003235 202 ELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQG--SSSSKAGADDLEGQNAART 274 (837)
Q Consensus 202 ~~sEeFleLS~e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d~~~l~~~~~~~~--s~~~~L~~~~L~~q~a~~~ 274 (837)
..+++|+.|+.+.|..||++|+|+|.+|++||+++++|++++...++.+..... .+..++.+.+|.+......
T Consensus 170 ~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~ 244 (571)
T KOG4441|consen 170 SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEP 244 (571)
T ss_pred hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999766544443333 2336666666655554443
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1.4e-31 Score=302.75 Aligned_cols=180 Identities=18% Similarity=0.295 Sum_probs=165.1
Q ss_pred HHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCC
Q 003235 53 QMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKL 131 (837)
Q Consensus 53 ~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~I 131 (837)
.+.+..++.+|||++++ |++|+|||+|||+ |+||++||+++|+|+.. +|.+.. .++++++|+.+|+|+|||++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~--~~v~~~~l~~lldy~YTg~l~i 88 (480)
T PHA02790 13 ILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVC--LDLDIHSLTSIVIYSYTGKVYI 88 (480)
T ss_pred HHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEe--cCcCHHHHHHHHHhheeeeEEE
Confidence 44567789999999865 5699999999996 99999999999999954 566531 1799999999999999999999
Q ss_pred CchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccccc--cccC
Q 003235 132 NDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELK--EVLP 208 (837)
Q Consensus 132 s~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~s--EeFl 208 (837)
+.+|+++||.||++||++.+++.|++||.++|+++||+.++.+|+.|++ ++|.+.|.+||.+|| ++.++ ++|+
T Consensus 89 t~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~----~~L~~~a~~fi~~nF~~v~~~~~~ef~ 164 (480)
T PHA02790 89 DSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGL----SNLLCHTKDFIAKHFLELEDDIIDNFD 164 (480)
T ss_pred ecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCH----HHHHHHHHHHHHHhHHHHhcccchhhh
Confidence 9999999999999999999999999999999999999999999999998 999999999999998 67765 8999
Q ss_pred CCCHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHh
Q 003235 209 KLSPQTLHALLTSDELWVPSEEQRFELALYAFLAK 243 (837)
Q Consensus 209 eLS~e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d 243 (837)
.|+. .+||++|+|+|.+|++||+++++|++++
T Consensus 165 ~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 165 YLSM---KLILESDELNVPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred hCCH---HHhcccccCCCccHHHHHHHHHHHHHhh
Confidence 9996 6899999999999999999999999985
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=295.27 Aligned_cols=179 Identities=22% Similarity=0.358 Sum_probs=170.4
Q ss_pred ccCCCCCcEEEEE--cCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCc
Q 003235 57 FNSGSFSDIIVHV--MGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLND 133 (837)
Q Consensus 57 f~ng~fSDVtLvV--~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~ 133 (837)
|.++.+|||+|++ +|++|+|||.|||+ |+||++||.++|+ ..+|+|+ + ++++|+.+|+|||||++.++.
T Consensus 4 ~~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~----~-~~~~~~~~l~y~Ytg~~~i~~ 75 (534)
T PHA03098 4 FELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN----I-DYDSFNEVIKYIYTGKINITS 75 (534)
T ss_pred cccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec----C-CHHHHHHHHHHhcCCceEEcH
Confidence 4489999999998 99999999999996 9999999999987 5789998 6 999999999999999999999
Q ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccccccccCCCCH
Q 003235 134 ANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKEVLPKLSP 212 (837)
Q Consensus 134 dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sEeFleLS~ 212 (837)
+++.+||.+|++|+++.|++.|++||.+.++.+||+.++.+|+.|++ ..|.+.|.+||.+|| .+..+++|.+|+.
T Consensus 76 ~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~----~~L~~~~~~~i~~nf~~v~~~~~f~~l~~ 151 (534)
T PHA03098 76 NNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGC----KKLYSAAYNYIRNNIELIYNDPDFIYLSK 151 (534)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCc----HHHHHHHHHHHHHHHHHHhcCchhhcCCH
Confidence 99999999999999999999999999999999999999999999998 999999999999998 7899999999999
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHHHHhCccc
Q 003235 213 QTLHALLTSDELWVPSEEQRFELALYAFLAKGAFC 247 (837)
Q Consensus 213 e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d~~~l 247 (837)
+.|..||++|+|+|.+|++||+++++|++++...+
T Consensus 152 ~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r 186 (534)
T PHA03098 152 NELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNK 186 (534)
T ss_pred HHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhh
Confidence 99999999999999999999999999999986443
No 5
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=220.81 Aligned_cols=213 Identities=26% Similarity=0.364 Sum_probs=198.9
Q ss_pred cccccccchhhhhhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhccCHHHHHhhccccccCCCCEEEeecCCCCCCHHH
Q 003235 37 ELRALDCNLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEA 116 (837)
Q Consensus 37 el~~~~s~l~sLl~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAAS~YFraMFss~~kES~~~eI~L~I~d~dVs~ea 116 (837)
+.....-.+..+.++++.++|+++..+||++.+-|++.+.||..|..|+||++||.+.|+|++...|.|.|+|+.|+..+
T Consensus 44 e~qpkr~~ll~t~kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~a 123 (488)
T KOG4682|consen 44 EAQPKRKKLLQTQKYIYQNLFLQGENSDVILEALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVA 123 (488)
T ss_pred hhchhHHHHHHHHHHHHHHHHhcCCCcceehhhccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCCcccHHH
Confidence 34455666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHH
Q 003235 117 IAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLC 196 (837)
Q Consensus 117 F~~LLeFIYTGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~ 196 (837)
|..++.-+|.++++|+.+.+..++++|.+++++.|.+.|.+.|++.|++++++.+|..+..|+. +.+++.|.+++.
T Consensus 124 l~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgl----e~vk~kc~ewl~ 199 (488)
T KOG4682|consen 124 LQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGL----ESVKKKCLEWLL 199 (488)
T ss_pred HHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhh----HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred hcc-ccccccccCCCCHHHHHHhccCCCCCCCC-HHHHHHHHHHHHHHhCccccccCCCCCCCC
Q 003235 197 QSG-AVELKEVLPKLSPQTLHALLTSDELWVPS-EEQRFELALYAFLAKGAFCKTECFEQGSSS 258 (837)
Q Consensus 197 kNF-eV~~sEeFleLS~e~L~eLLSSD~L~V~S-EeeVFeAVlrWI~~d~~~l~~~~~~~~s~~ 258 (837)
.|+ .+....-+.+++.+.+.+||.|++|.|.+ |.++|..+..|+ +++++|+.+.+-.
T Consensus 200 ~nl~~i~~~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm-----fLql~pd~~~~lk 258 (488)
T KOG4682|consen 200 NNLMTIQNVQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM-----FLQLVPDWNGSLK 258 (488)
T ss_pred HhhHhhhhHHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH-----Hhhhcccccchhc
Confidence 996 66666689999999999999999999988 999999999985 6778887777433
No 6
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.89 E-value=3.9e-23 Score=224.17 Aligned_cols=183 Identities=22% Similarity=0.296 Sum_probs=172.8
Q ss_pred HHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCC
Q 003235 53 QMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKL 131 (837)
Q Consensus 53 ~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~I 131 (837)
+.+++.+.+++||+|++++++|+|||+|||+ |.|||+|+.++|.|+.+..|.|+ .-+.++|+.+|+|||||++.+
T Consensus 35 ~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq----~t~~eAF~~lLrYiYtg~~~l 110 (620)
T KOG4350|consen 35 FDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ----ETNSEAFRALLRYIYTGKIDL 110 (620)
T ss_pred HHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc----cccHHHHHHHHHHHhhcceec
Confidence 4577889999999999999999999999996 99999999999999999999998 778999999999999999965
Q ss_pred ---CchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-cccccccc
Q 003235 132 ---NDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKEVL 207 (837)
Q Consensus 132 ---s~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sEeF 207 (837)
..+.+++.|.+|++|++++|.....+||++.+..+|++-++..|..|++ ++|...|..|+.+|. +++..+.|
T Consensus 111 ~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l----~~Lt~~C~mfmDrnA~~lL~~~sF 186 (620)
T KOG4350|consen 111 AGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQL----TDLTDYCMMFMDRNADQLLEDPSF 186 (620)
T ss_pred ccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcc----hHHHHHHHHHHhcCHHhhhcCcch
Confidence 5577999999999999999999999999999999999999999999998 999999999999995 89999999
Q ss_pred CCCCHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhC
Q 003235 208 PKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKG 244 (837)
Q Consensus 208 leLS~e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d~ 244 (837)
..|+.+.|+++|.+|.... -|.++|.|+..|-+++.
T Consensus 187 n~LSk~sL~e~l~RDsFfA-pE~~IFlAv~~W~~~Ns 222 (620)
T KOG4350|consen 187 NRLSKDSLKELLARDSFFA-PELKIFLAVRSWHQNNS 222 (620)
T ss_pred hhhhHHHHHHHHhhhcccc-hHHHHHHHHHHHHhcCc
Confidence 9999999999999999874 69999999999999876
No 7
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.77 E-value=1.8e-18 Score=191.96 Aligned_cols=185 Identities=23% Similarity=0.213 Sum_probs=170.9
Q ss_pred HHHhcccCCCCCcEEEEEcC-----eEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHh
Q 003235 52 IQMEGFNSGSFSDIIVHVMG-----STYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLY 125 (837)
Q Consensus 52 v~lklf~ng~fSDVtLvV~G-----~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIY 125 (837)
-+.-++++...+||.|+|++ +.++|||.|||. |+.|.+||.+++.+....+|.++ ++.+.+|..+|+|||
T Consensus 104 r~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp----dvepaaFl~~L~flY 179 (521)
T KOG2075|consen 104 RQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP----DVEPAAFLAFLRFLY 179 (521)
T ss_pred hhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC----CcChhHhHHHHHHHh
Confidence 35567899999999999973 579999999995 99999999999999978899998 999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHH-HhhcccCCchHHHHHHHHHHHHhcc-cccc
Q 003235 126 GHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVF-AENQDYGIHGERVRNACWGYLCQSG-AVEL 203 (837)
Q Consensus 126 TGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~f-Ae~y~lgl~seeLk~aCl~FI~kNF-eV~~ 203 (837)
++.+.+..++++.+|.+|++|.++.|.+.|.+||...+...|.+..+-. |..++- ++|.+.|++-|..++ +.+.
T Consensus 180 sdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~e----p~Li~~c~e~id~~~~~al~ 255 (521)
T KOG2075|consen 180 SDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDE----PSLISICLEVIDKSFEDALT 255 (521)
T ss_pred cchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcC----HHHHHHHHHHhhhHHHhhhC
Confidence 9999999999999999999999999999999999999998888776666 888776 999999999999997 7888
Q ss_pred ccccCCCC--HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhCc
Q 003235 204 KEVLPKLS--PQTLHALLTSDELWVPSEEQRFELALYAFLAKGA 245 (837)
Q Consensus 204 sEeFleLS--~e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d~~ 245 (837)
.|.|.++. .+.++++|+++.|.+. |..+|+|+++|+...+.
T Consensus 256 ~EGf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~ 298 (521)
T KOG2075|consen 256 PEGFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQ 298 (521)
T ss_pred ccceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcch
Confidence 99999998 9999999999999986 99999999999998875
No 8
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.66 E-value=1.5e-16 Score=143.52 Aligned_cols=105 Identities=34% Similarity=0.601 Sum_probs=92.8
Q ss_pred HhcccCCCCCcEEEEEc-CeEEEEehhhhcc-CHHHHHhhccc-cccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCC
Q 003235 54 MEGFNSGSFSDIIVHVM-GSTYHLHRLILSR-SSYFRNMLHDH-WKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPK 130 (837)
Q Consensus 54 lklf~ng~fSDVtLvV~-G~~f~AHRvILAA-S~YFraMFss~-~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~ 130 (837)
.++++++.++|++|.++ +++|+|||.||++ |+||++||.+. +.+....+|.++ ++++++|+.+|+|+|++++.
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~l~~~Y~~~~~ 77 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP----DVSPEAFEAFLEYMYTGEIE 77 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET----TSCHHHHHHHHHHHHHSEEE
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc----cccccccccccccccCCccc
Confidence 46778999999999999 8999999999985 99999999987 566555677777 99999999999999999999
Q ss_pred CC-chhHHHHHHHHHhcChHHHHHHHHHHHHhc
Q 003235 131 LN-DANAFRVLAAASFLDLQDLCAICTDFIISE 162 (837)
Q Consensus 131 Is-~dnVleLL~AAd~LqL~~Lk~lCeefL~s~ 162 (837)
++ .+++.+++.+|++|+++.|++.|.++|.+.
T Consensus 78 ~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 98 999999999999999999999999999864
No 9
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.55 E-value=1.2e-14 Score=147.37 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=141.0
Q ss_pred HHHhcccCCCCCcEEEEEc---CeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcC
Q 003235 52 IQMEGFNSGSFSDIIVHVM---GSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGH 127 (837)
Q Consensus 52 v~lklf~ng~fSDVtLvV~---G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTG 127 (837)
+...++..++|+|++|.++ ++.++|||.|||+ |++++ |.++-.| ...+..+. ++++++|..+++||||+
T Consensus 56 itadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~d----Dad~Ea~~t~iRWIYTD 128 (280)
T KOG4591|consen 56 ITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLD----DADFEAFHTAIRWIYTD 128 (280)
T ss_pred HHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhccc----ccCHHHHHHhheeeecc
Confidence 4567889999999999997 5779999999996 98875 3332222 22334444 99999999999999999
Q ss_pred CCCCCc--hhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcccccccc
Q 003235 128 RPKLND--ANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAVELKE 205 (837)
Q Consensus 128 eL~Is~--dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNFeV~~sE 205 (837)
++++.. ..+.++.+.|+.|++.-|++.|++-+...++.+||+.+|.+|+..+. ..|...|...|+.+..-+..+
T Consensus 129 Eidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~----~qL~n~~~eiIA~~W~dL~~a 204 (280)
T KOG4591|consen 129 EIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNA----RQLMNVAAEIIAGAWDDLGKA 204 (280)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhH----HHHHHHHHHHHHhhccccChH
Confidence 998654 55899999999999999999999999999999999999999999887 899999999999998888999
Q ss_pred ccCCCCHHHHHHhccCCCCC
Q 003235 206 VLPKLSPQTLHALLTSDELW 225 (837)
Q Consensus 206 eFleLS~e~L~eLLSSD~L~ 225 (837)
+|.+++...|..++.++.-+
T Consensus 205 ~FaqMs~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 205 DFAQMSAALLYKLIDGKTEN 224 (280)
T ss_pred HHHhccHHHHHHHHcCCCcc
Confidence 99999999999999887644
No 10
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.53 E-value=2.6e-14 Score=121.32 Aligned_cols=89 Identities=26% Similarity=0.540 Sum_probs=83.8
Q ss_pred cEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 003235 64 DIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAA 142 (837)
Q Consensus 64 DVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~dnVleLL~A 142 (837)
||+|.++++.|++||.+|++ |+||++||.+.+.+.....|.++ ++++.+|+.+|+|+|++++.++..++.+++.+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~----~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD----DVSPEDFRALLEFLYTGKLDLPEENVEELLEL 76 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec----CCCHHHHHHHHHeecCceeecCHHHHHHHHHH
Confidence 78999999999999999995 99999999998887777888888 89999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHH
Q 003235 143 ASFLDLQDLCAICT 156 (837)
Q Consensus 143 Ad~LqL~~Lk~lCe 156 (837)
|++|+++.|++.|+
T Consensus 77 a~~~~~~~l~~~c~ 90 (90)
T smart00225 77 ADYLQIPGLVELCE 90 (90)
T ss_pred HHHHCcHHHHhhhC
Confidence 99999999999884
No 11
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.35 E-value=1.1e-12 Score=152.33 Aligned_cols=150 Identities=22% Similarity=0.374 Sum_probs=123.5
Q ss_pred CCCCcEEEEE-cCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhc-CCCCC-----
Q 003235 60 GSFSDIIVHV-MGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYG-HRPKL----- 131 (837)
Q Consensus 60 g~fSDVtLvV-~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYT-GeL~I----- 131 (837)
+..-|+.|++ +|+.++|||++|++ .+||..||..-|.|++.-.+.+- .+..+.|+.+|+|+|+ .+..+
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~----p~~~e~m~ivLdylYs~d~~~~~k~~~ 783 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS----PLTVEHMSIVLDYLYSDDKVELFKDLK 783 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC----cchHHHHHHHHHHHHccchHHHHhccc
Confidence 4555777766 77889999999986 99999999999999887555554 7789999999999994 44422
Q ss_pred CchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccccccccCCC
Q 003235 132 NDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKEVLPKL 210 (837)
Q Consensus 132 s~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sEeFleL 210 (837)
..+.+.+++.+||.|.+.+|+..|+..|.+.|+..+|..++.||..|++ ++|+..|++||+.|. .++......++
T Consensus 784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~a----k~L~~~C~dfic~N~~~~Learsi~~~ 859 (1267)
T KOG0783|consen 784 ESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHA----KELYSRCIDFICHNIEFFLEARSISEW 859 (1267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhH----HHHHHHHHHHHHHhHHHHHHhccHhhh
Confidence 3466899999999999999999999999999999999999999999988 999999999999994 44444444444
Q ss_pred CHHHHHH
Q 003235 211 SPQTLHA 217 (837)
Q Consensus 211 S~e~L~e 217 (837)
+-..|+.
T Consensus 860 dg~~LK~ 866 (1267)
T KOG0783|consen 860 DGFHLKK 866 (1267)
T ss_pred cchHHHH
Confidence 4444444
No 12
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.92 E-value=5.9e-10 Score=99.98 Aligned_cols=74 Identities=26% Similarity=0.329 Sum_probs=67.0
Q ss_pred HHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccccccccCCCCHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhCc
Q 003235 168 LLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGA 245 (837)
Q Consensus 168 ~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sEeFleLS~e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d~~ 245 (837)
|+.++.+|..|++ .+|.+.|.+||.+|| .+..+++|.+||.+.+..||++++|+|.+|.+||+++++|+.+++.
T Consensus 1 C~~i~~~A~~~~~----~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 1 CLSIYRLAEKYGL----EELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHHTT-----HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHcCh----HHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 7899999999988 999999999999998 7888999999999999999999999999999999999999999864
No 13
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=98.85 E-value=4.3e-09 Score=93.14 Aligned_cols=73 Identities=32% Similarity=0.338 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccccccccCCCCHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhC
Q 003235 168 LLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKG 244 (837)
Q Consensus 168 ~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sEeFleLS~e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d~ 244 (837)
|+.++.+|..|++ ..|.+.|..||.+|| .+..+++|.+||.+.+..+|++|+|+|.+|.++|+++++|++++.
T Consensus 1 c~~i~~~a~~~~~----~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 1 CLGIRRFAELYGL----EELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred CHhHHHHHHHhCh----HHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCH
Confidence 5678899999887 999999999999997 777889999999999999999999999999999999999999985
No 14
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.05 E-value=1.1e-05 Score=95.73 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=70.0
Q ss_pred CCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEee----------cCCCCCCHHHHHHHHHHHhcC
Q 003235 59 SGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLH----------VDDKNVNGEAIAMALAYLYGH 127 (837)
Q Consensus 59 ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~----------I~d~dVs~eaF~~LLeFIYTG 127 (837)
...+.||+|.|+++.|+|||.||++ |+||+.+|....+.+....|.+. ++ ++.+..|+.+|+||||+
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve--~i~p~mfe~lL~~iYtd 632 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE--DIPPLMFEILLHYIYTD 632 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec--cCCHHHHHHHHHHHhcc
Confidence 4577899999999999999999985 99999999775544433333333 22 89999999999999998
Q ss_pred CCC--------------CCchhHH-------HHHHHHHhcChHHHHHHH
Q 003235 128 RPK--------------LNDANAF-------RVLAAASFLDLQDLCAIC 155 (837)
Q Consensus 128 eL~--------------Is~dnVl-------eLL~AAd~LqL~~Lk~lC 155 (837)
.+- +-.+|.. .+...+.+|++.+|....
T Consensus 633 t~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 633 TLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred cccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 541 1123333 377777888877776544
No 15
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.02 E-value=9e-06 Score=89.93 Aligned_cols=131 Identities=17% Similarity=0.097 Sum_probs=104.7
Q ss_pred eEEEEehhhhccCHHHHHhhccccccCCCC----EEEeecCCCCCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhcC
Q 003235 72 STYHLHRLILSRSSYFRNMLHDHWKEASAP----VVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLD 147 (837)
Q Consensus 72 ~~f~AHRvILAAS~YFraMFss~~kES~~~----eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~dnVleLL~AAd~Lq 147 (837)
.+++||+.++.+.+||+.||.+++.|++.+ ...|+ .....+.+.+++|+|+.+.++..+-+.+++..|+++-
T Consensus 301 ~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp----~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~la 376 (516)
T KOG0511|consen 301 DRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP----SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLA 376 (516)
T ss_pred ccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc----hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhh
Confidence 459999999999999999999999996532 23333 7888999999999999999999999999999999997
Q ss_pred hH--H-HHHHHHHHHHh---ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccccccccCCC
Q 003235 148 LQ--D-LCAICTDFIIS---ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKEVLPKL 210 (837)
Q Consensus 148 L~--~-Lk~lCeefL~s---~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sEeFleL 210 (837)
+. . |+.+....|.+ .++.-+++.++.++-.... .+|...+..|+..|. .+...+++.++
T Consensus 377 l~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~----~rlEqfa~~~~a~hl~~l~~dPe~~~~ 442 (516)
T KOG0511|consen 377 LADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVA----CRLEQFAETHEARHLLLLLPDPEGDSS 442 (516)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 65 2 55555555554 3555678888888877655 889999999999995 66777777543
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.30 E-value=0.00056 Score=61.61 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=67.4
Q ss_pred EEEEEcCeEEEEehhhhc-c-CHHHHHhhccc---cccCCCCEEEeecCCCCCCHHHHHHHHHHHhc-CCCCCC-chhHH
Q 003235 65 IIVHVMGSTYHLHRLILS-R-SSYFRNMLHDH---WKEASAPVVTLHVDDKNVNGEAIAMALAYLYG-HRPKLN-DANAF 137 (837)
Q Consensus 65 VtLvV~G~~f~AHRvILA-A-S~YFraMFss~---~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYT-GeL~Is-~dnVl 137 (837)
|.|.|+|+.|.+-+..|. . ..+|.+|+... .......++-+ +-++..|+.||+|+-+ +.+... ...+.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-----DRdp~~F~~IL~ylr~~~~l~~~~~~~~~ 75 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-----DRDPELFEYILNYLRTGGKLPIPDEICLE 75 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-----SS-HHHHHHHHHHHHHTSSB---TTS-HH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-----ccChhhhhHHHHHHhhcCccCCCCchhHH
Confidence 688999999999999998 4 77999999864 44455677777 6799999999999999 666653 56788
Q ss_pred HHHHHHHhcChHHH-HHHH
Q 003235 138 RVLAAASFLDLQDL-CAIC 155 (837)
Q Consensus 138 eLL~AAd~LqL~~L-k~lC 155 (837)
.++.-|.+|+++.| ++.|
T Consensus 76 ~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 76 ELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHHHT-HHHHBHHC
T ss_pred HHHHHHHHcCCCccccCCC
Confidence 99999999999998 6665
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0016 Score=68.94 Aligned_cols=93 Identities=16% Similarity=0.330 Sum_probs=78.6
Q ss_pred EEEEEcCeEEEEehhhhcc-CHHHHHhhccccc--cCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCC--chhHHHH
Q 003235 65 IIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWK--EASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLN--DANAFRV 139 (837)
Q Consensus 65 VtLvV~G~~f~AHRvILAA-S~YFraMFss~~k--ES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is--~dnVleL 139 (837)
|.+.|+|..|..++.-|.. ..||++||..++. ......|-+ +=+|.-|..||+||-.|.+.+. ...+.+|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-----DRSpKHF~~ILNfmRdGdv~LPe~~kel~El 81 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-----DRSPKHFDTILNFMRDGDVDLPESEKELKEL 81 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-----cCChhHHHHHHHhhhcccccCccchHHHHHH
Confidence 5688999999999999996 9999999998763 223344555 6789999999999998888764 4668899
Q ss_pred HHHHHhcChHHHHHHHHHHHHhc
Q 003235 140 LAAASFLDLQDLCAICTDFIISE 162 (837)
Q Consensus 140 L~AAd~LqL~~Lk~lCeefL~s~ 162 (837)
+.=|.+|.|+.|++.|...|...
T Consensus 82 ~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 82 LREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhc
Confidence 99999999999999999988764
No 18
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.86 E-value=0.00085 Score=72.19 Aligned_cols=95 Identities=23% Similarity=0.360 Sum_probs=65.7
Q ss_pred EEEEehhhhcc-CHHHHHhhccccccC---------CCCEEEeecCCCCCCHHHH-HHHHHHHhcCCCCCC---------
Q 003235 73 TYHLHRLILSR-SSYFRNMLHDHWKEA---------SAPVVTLHVDDKNVNGEAI-AMALAYLYGHRPKLN--------- 132 (837)
Q Consensus 73 ~f~AHRvILAA-S~YFraMFss~~kES---------~~~eI~L~I~d~dVs~eaF-~~LLeFIYTGeL~Is--------- 132 (837)
+++||+.|.|+ |++||.++....++. ...+|.+. ..|-|.+| -.+|.+|||+.++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifd---E~I~PkafA~i~lhclYTD~lDlSl~hkce~Si 338 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFD---ELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSI 338 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeech---hhhcchhhhhhhhhhheecccchhhcccCCccc
Confidence 59999999986 999999996644432 22445543 34555555 467899999987543
Q ss_pred -------------------chhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHH
Q 003235 133 -------------------DANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLA 170 (837)
Q Consensus 133 -------------------~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~ 170 (837)
...+++|+.+|-+|.+.-|.+.|+..+......++...
T Consensus 339 gSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~ 395 (401)
T KOG2838|consen 339 GSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNG 395 (401)
T ss_pred ccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 12356777888888888888888888877665554433
No 19
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.72 E-value=0.0018 Score=71.37 Aligned_cols=89 Identities=18% Similarity=0.372 Sum_probs=73.7
Q ss_pred eEEEEehhhhcc-CHHHHHhhccccc-cCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhcChH
Q 003235 72 STYHLHRLILSR-SSYFRNMLHDHWK-EASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQ 149 (837)
Q Consensus 72 ~~f~AHRvILAA-S~YFraMFss~~k-ES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~dnVleLL~AAd~LqL~ 149 (837)
+.|.|.+-+|-. -.||+..+..... .....+|.|.| .-+..+|+-+++|+......+++.|+..||.-|++|+|+
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV---hCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~ 90 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV---HCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQME 90 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE---ecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccH
Confidence 469999999986 8999999965211 12233455543 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 003235 150 DLCAICTDFIISEL 163 (837)
Q Consensus 150 ~Lk~lCeefL~s~L 163 (837)
.|++.|..|+.+++
T Consensus 91 ~Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 91 SLVEECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHHHHhH
Confidence 99999999997654
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.63 E-value=0.0023 Score=69.03 Aligned_cols=97 Identities=10% Similarity=0.073 Sum_probs=71.6
Q ss_pred HHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCC
Q 003235 52 IQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPK 130 (837)
Q Consensus 52 v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~ 130 (837)
.+..++......|+-|+....-|+|||++||+ |++|+.+.+++..- ..++...+.-.+++..+|+.+|.|+|+|+..
T Consensus 120 D~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~--~ae~i~dik~ag~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 120 DFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEP--EAEDICDIKFAGFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred HHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCc--chhhhhhhhhhccChHHHHHHHHHHHhcccc
Confidence 45566677788899999999999999999996 99999988764322 2222222222389999999999999999884
Q ss_pred C---CchhHHHHHHHHHhcChHH
Q 003235 131 L---NDANAFRVLAAASFLDLQD 150 (837)
Q Consensus 131 I---s~dnVleLL~AAd~LqL~~ 150 (837)
. .-.|+.-|.++..-|+.+.
T Consensus 198 mEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 198 MEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred hhhcCCchHHHHHHHHHhhCCch
Confidence 3 4456666777777777653
No 21
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=96.51 E-value=0.045 Score=49.44 Aligned_cols=110 Identities=23% Similarity=0.373 Sum_probs=70.5
Q ss_pred CCCCcccCcceeecccceEEEEEeecCCCCCccceeeeeEEeecCcCCCCccccceeecCccceEEEEEEEccCCC-ceE
Q 003235 711 SDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLICPSKR-EVM 789 (837)
Q Consensus 711 ~~~~~~~s~~~~yaGs~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R~~v~a~f~~~c~s~~-~~~ 789 (837)
..+...+|+..-+.|-.|.+.++.-.... ...-|+|||+-...... .....+.|.|++.--.+. +..
T Consensus 13 ~~~~~~~S~~f~~~g~~W~l~~~p~~~~~--~~~~lsv~L~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 13 LEGESIYSPPFEVGGYKWRIRIYPNGDGE--SGDYLSLYLELDKGESD----------LEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred CCCcEEECCCEEEcCEeEEEEEEcCCCCC--CCCEEEEEEEecCCCCC----------CCCCcEEEEEEEEEECCCCCcc
Confidence 37999999999999999999886644333 23689999987654433 122344555555444443 221
Q ss_pred EeeeccccCCCCCCCCCccchhhhhhhHHHHhh--hcccceEEEEEE
Q 003235 790 VFGSFKQRGTLLPKAPKGWGWRTALLFDELADI--LQNGTLRVAAVV 834 (837)
Q Consensus 790 ~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~~~~--~~~~~l~~~~v~ 834 (837)
.--+....+. .....+|||+.-.-.++|.+. +.++.|.|-+-|
T Consensus 81 ~~~~~~~~~~--~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v 125 (126)
T cd00121 81 LSKSFTHVFF--SEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEV 125 (126)
T ss_pred ceEeccCCcC--CCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEE
Confidence 1111111110 255799999988888888887 489999887755
No 22
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.36 E-value=0.011 Score=54.71 Aligned_cols=80 Identities=21% Similarity=0.388 Sum_probs=59.5
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhccccccC-CCCEEEeecCCCCCCHHHHHHHHHHHhcCCC-------------
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHDHWKEA-SAPVVTLHVDDKNVNGEAIAMALAYLYGHRP------------- 129 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss~~kES-~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL------------- 129 (837)
|+|+. +|.+|.+.+.+...|..++.|+.....+. ....|.|+ +|+..+|+.+++|++...-
T Consensus 4 v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~----~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 4 IKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP----NVTSKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred EEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC----CcCHHHHHHHHHHHHHcccCCCCccccccccH
Confidence 55554 78999999998888999999997533222 22467776 9999999999999974321
Q ss_pred ------CCCchhHHHHHHHHHhcCh
Q 003235 130 ------KLNDANAFRVLAAASFLDL 148 (837)
Q Consensus 130 ------~Is~dnVleLL~AAd~LqL 148 (837)
.++.+.+.+|+.||++|++
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1445568888888888864
No 23
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0022 Score=68.67 Aligned_cols=119 Identities=20% Similarity=0.134 Sum_probs=99.9
Q ss_pred CeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCchhHH---HHHHHHHhc
Q 003235 71 GSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAF---RVLAAASFL 146 (837)
Q Consensus 71 G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~dnVl---eLL~AAd~L 146 (837)
+..+.+|++++++ ++.|+.|+..+..+.....+++. +.++..++.+..|.|+..-....+.+. .++.+|..+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~----d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~ 184 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL----EEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKY 184 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhcccccccc----ccchhhHhhhceEEEeccchHHHHHhhcCChhhhhcccc
Confidence 4569999999986 99999999887766666666776 889999999999999976655555554 888899999
Q ss_pred ChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHh
Q 003235 147 DLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQ 197 (837)
Q Consensus 147 qL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~k 197 (837)
+...|+..|...+...+...++..++..+..+.. ..+...+..++..
T Consensus 185 ~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 185 KNRHLKLACMPVLLSLIETLNVSQSLQEASNYDL----KEAKSALTYVIAA 231 (297)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHH----HHHHHHHHHHHhc
Confidence 9999999999999999999998888888888765 6677777777776
No 24
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.79 E-value=0.041 Score=51.54 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=63.4
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhcccc--ccCCCCEEEeecCCCCCCHHHHHHHHHHH-----hcCC------CC
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHDHW--KEASAPVVTLHVDDKNVNGEAIAMALAYL-----YGHR------PK 130 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss~~--kES~~~eI~L~I~d~dVs~eaF~~LLeFI-----YTGe------L~ 130 (837)
|+++. +|.+|-.-|-+-.-|.-.|+||.+.. .+...++|.+. ++....++.+.+|+ |++. .+
T Consensus 19 VkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~----di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~ 94 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR----DIPSHILEKVCEYLAYKVRYTNSSTEIPEFD 94 (112)
T ss_pred eEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec----cchHHHHHHHHHHhhheeeeccccccCCCCC
Confidence 55554 66777777766556999999999754 45567889998 99999999999998 4443 36
Q ss_pred CCchhHHHHHHHHHhcCh
Q 003235 131 LNDANAFRVLAAASFLDL 148 (837)
Q Consensus 131 Is~dnVleLL~AAd~LqL 148 (837)
|.++.+++||.+|++|.+
T Consensus 95 IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 95 IPPEMALELLMAANYLEC 112 (112)
T ss_pred CCHHHHHHHHHHhhhhcC
Confidence 788999999999999863
No 25
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.05 Score=55.15 Aligned_cols=99 Identities=13% Similarity=0.241 Sum_probs=74.9
Q ss_pred cCeEEEEehhhhccCHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCC--------------------
Q 003235 70 MGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRP-------------------- 129 (837)
Q Consensus 70 ~G~~f~AHRvILAAS~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL-------------------- 129 (837)
+|+.|.+-..++..|..+++++...--......|.|+ +|+...|..||+|++.-+-
T Consensus 13 DG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~~~IPl~----nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 13 DGEIFEVEEEVARQSQTISAHMIEDGCADENDPIPLP----NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred CCceeehhHHHHHHhHHHHHHHHHcCCCccCCccccC----ccCHHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 7889999999888899988888642211121457776 8999999999999987331
Q ss_pred -----CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHH
Q 003235 130 -----KLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQ 172 (837)
Q Consensus 130 -----~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il 172 (837)
.++..++.+|+.||++|.++.|.+.|++.+...+.-.+--++.
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir 136 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIR 136 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHH
Confidence 1334579999999999999999999999988766444443333
No 26
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=94.69 E-value=0.35 Score=46.51 Aligned_cols=124 Identities=21% Similarity=0.343 Sum_probs=76.6
Q ss_pred ceeEEEeccccccCCCCcccCcceeecccceEEEEEeecCCCC-CccceeeeeEEeecCcCCCCccccceeecCccceEE
Q 003235 698 FRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDP-QGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTA 776 (837)
Q Consensus 698 fRF~vef~~v~~l~~~~~~~s~~~~yaGs~~~~~~q~~~~~~~-~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R~~v~a 776 (837)
-.|..+|.++.+| ++..+|++.-.+|--|.+.+..-...+. ....-|+|||+-.+..... +-.-.+.-
T Consensus 3 ~~~~~~I~~~S~l--~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~---------~w~i~a~~ 71 (137)
T cd03772 3 ATFSFTVERFSRL--SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDST---------SWSCHAQA 71 (137)
T ss_pred cEEEEEECCcccC--CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCC---------CCeEEEEE
Confidence 3577889999999 6789999999999999997764332211 1114699999975432110 22233334
Q ss_pred EEEEEccCCCceEEeeeccccCCCCCCCCCccchhhhhhhHHH----HhhhcccceEEEEEEe
Q 003235 777 RYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDEL----ADILQNGTLRVAAVVQ 835 (837)
Q Consensus 777 ~f~~~c~s~~~~~~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~----~~~~~~~~l~~~~v~~ 835 (837)
.|+|.-+...+. .+..... ..+.+....|||..-+..++| ..-+.+++|.|-+.|.
T Consensus 72 ~~~l~~~~~~~~-~~~~~~~--~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~ 131 (137)
T cd03772 72 VLRIINYKDDEP-SFSRRIS--HLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQ 131 (137)
T ss_pred EEEEEcCCCCcc-cEEEeee--eEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEE
Confidence 455665552111 1111100 112344579999998888888 4567899888777664
No 27
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.04 E-value=0.22 Score=42.30 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=44.6
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhc
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYG 126 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYT 126 (837)
|+|+. +|+.|.+.+.++..|..++.||.....+.. .|.|+ +++...|+.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~~~--~Ipl~----~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDEDE--PIPLP----NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCCGT--EEEET----TS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccccc--ccccC----ccCHHHHHHHHHHHHh
Confidence 45555 889999999999999999999975333222 67787 9999999999999963
No 28
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=93.97 E-value=1.2 Score=42.25 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=67.5
Q ss_pred CCce-eEEEeccccccC-CCCcccCcceeecccceEEEEEee-cCCCCCccceeeeeEEeecCcCCCCccccceeecCcc
Q 003235 696 PPFR-FGIEFEDVHRLS-DGQVKHSPEYFYAGSLWKVSVQAF-NDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSRE 772 (837)
Q Consensus 696 ppfR-F~vef~~v~~l~-~~~~~~s~~~~yaGs~~~~~~q~~-~~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R~ 772 (837)
|||+ |..+..+.++|+ .++..+|++.--.|-.|.+.+--- +.+.. + .-|++||+-.+.. ..+ -
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~-~-~~lSl~L~l~~~~----~~~--------~ 67 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVR-G-NFLSVFLELCSGL----GEA--------S 67 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCC-C-CEEEEEEEeecCC----CCc--------e
Confidence 4443 333444555554 577899999777888999776321 11111 1 3599999864321 001 1
Q ss_pred ceEEEEEEEccC-CCceEEeeeccccCCCCCCCCCccchhhhhhhHHHHh--hhcc--cceEEEEEEe
Q 003235 773 KVTARYQLICPS-KREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELAD--ILQN--GTLRVAAVVQ 835 (837)
Q Consensus 773 ~v~a~f~~~c~s-~~~~~~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~~~--~~~~--~~l~~~~v~~ 835 (837)
++...|+|..+. +...+.. .. ...+.+..+|||..-.-.++|.+ -+.+ .+|.|-+.|+
T Consensus 68 ~~~~~l~llnq~~~~~~~~~-~~----~~~f~~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 68 KYEYRVEMVHQANPTKNIKR-EF----ASDFEVGECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred eEEEEEEEEcCCCCccceEE-ec----cccccCCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 223335566663 2211211 11 12234457899998777777765 3466 8888877664
No 29
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=93.65 E-value=0.22 Score=57.03 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=68.6
Q ss_pred EEEEEcCeEEEEehhhhc-c--CHHHHHhhccccccCCCCE--EEeecCCCCCCHHHHHHHHHHHhcCCCCCCchhHHHH
Q 003235 65 IIVHVMGSTYHLHRLILS-R--SSYFRNMLHDHWKEASAPV--VTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRV 139 (837)
Q Consensus 65 VtLvV~G~~f~AHRvILA-A--S~YFraMFss~~kES~~~e--I~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~dnVleL 139 (837)
|.|.|+|+.|.-.+.-|+ + =.||.++|++.|.-..... |-+ +=+|+.|..+|+|+-||++.+.......+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-----DRDPdlFaviLn~LRTg~L~~~g~~~~~l 87 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-----DRDPDLFAVILNLLRTGDLDASGVFPERL 87 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-----cCCchHHHHHHHHHhcCCCCCccCchhhh
Confidence 778899999999999997 3 5799999998776554433 444 67899999999999999999976665555
Q ss_pred HH-HHHhcChHHHHH
Q 003235 140 LA-AASFLDLQDLCA 153 (837)
Q Consensus 140 L~-AAd~LqL~~Lk~ 153 (837)
+. =|.||++..|..
T Consensus 88 lhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 88 LHDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhhcCcHHHHH
Confidence 55 899999998765
No 30
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=92.94 E-value=0.35 Score=43.91 Aligned_cols=115 Identities=21% Similarity=0.452 Sum_probs=75.9
Q ss_pred eccccccCCCCcccCcceee-cccceEEEEEeecCCCCCccceeeeeEEeecCcCCCCccccceeecCccceEEEEEEEc
Q 003235 704 FEDVHRLSDGQVKHSPEYFY-AGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLIC 782 (837)
Q Consensus 704 f~~v~~l~~~~~~~s~~~~y-aGs~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R~~v~a~f~~~c 782 (837)
+.|+.+|+++..+++..+|- .|=-|.+.+..-.. + ..|++|||=...+.... .+-+-.++-.|.|.-
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~-~~l~~~L~~~~~~~~~~-------~~w~~~~~~~~~~~~ 68 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----G-KYLSVYLHCDKGENDSD-------LEWSIEAEFRFRLLN 68 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----T-TEEEEEEEEECSTTGGG-------SSSSEEEEEEEEEE-
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----c-CcEEEEEEEeecccccc-------cceeeeEEEEEEEec
Confidence 46888999888888866666 67678777665444 2 57999999777655430 122234455666666
Q ss_pred cCCCceEEeeeccccCCCCCCCCCccchhhhhhhHHHHh--hhcccceEEEEEEe
Q 003235 783 PSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELAD--ILQNGTLRVAAVVQ 835 (837)
Q Consensus 783 ~s~~~~~~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~~~--~~~~~~l~~~~v~~ 835 (837)
+.......-.. ...+..+.+|||..-.-.+++.+ .+.+++|-|.|=|.
T Consensus 69 ~~~~~~~~~~~-----~~~F~~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~ 118 (119)
T PF00917_consen 69 QNGKSISKRIK-----SHSFNNPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVK 118 (119)
T ss_dssp TTSCEEEEEEE-----CEEECTTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEE
T ss_pred CCCCcceeeee-----eeEEeeecccchhheeEHHHhCccCCeECCEEEEEEEEE
Confidence 65554322211 12335559999999888889988 47999998887664
No 31
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=92.79 E-value=0.39 Score=51.20 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=69.7
Q ss_pred EEEEEcCeEEEEehhhhc-c--CHHHHHhhccc--cc-cCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCC-CCchhHH
Q 003235 65 IIVHVMGSTYHLHRLILS-R--SSYFRNMLHDH--WK-EASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPK-LNDANAF 137 (837)
Q Consensus 65 VtLvV~G~~f~AHRvILA-A--S~YFraMFss~--~k-ES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~-Is~dnVl 137 (837)
|.+.++|+.|.--+--|. + -.-..+||.+. +. ++...-+-+ +-++.-|+.||+|+-.|++. .+.-++.
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-----DRsp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-----DRSPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-----ccCchhhHHHHHHHhcCceeecCCccHH
Confidence 778889999988777775 3 55788899763 22 223333444 68899999999999999986 5667899
Q ss_pred HHHHHHHhcChHHHHHHHHH
Q 003235 138 RVLAAASFLDLQDLCAICTD 157 (837)
Q Consensus 138 eLL~AAd~LqL~~Lk~lCee 157 (837)
.+|+.|++|++-.|++..++
T Consensus 86 gvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 86 GVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHhhHHhhHhHHhHHhh
Confidence 99999999999999998887
No 32
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.68 Score=45.66 Aligned_cols=98 Identities=16% Similarity=0.295 Sum_probs=71.4
Q ss_pred EEEE-EcCeEEEEehhhhccCHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCC--------------
Q 003235 65 IIVH-VMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRP-------------- 129 (837)
Q Consensus 65 VtLv-V~G~~f~AHRvILAAS~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL-------------- 129 (837)
|.+. .+|..|.+.+.+--+|-..+.|+.. +.+ ..++++-+++...+|..+++|+-...-
T Consensus 4 i~l~s~dge~F~vd~~iAerSiLikN~l~d-~~~-----~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 4 IELESIDGEIFRVDENIAERSILIKNMLCD-STA-----CNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred eEEEecCCcEEEehHHHHHHHHHHHHHhcc-ccc-----cCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 4443 4788899988887779888888853 222 223333449999999999999964321
Q ss_pred -----------CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccH
Q 003235 130 -----------KLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNL 168 (837)
Q Consensus 130 -----------~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~ 168 (837)
.++.+.+.++..+|+||.++.|.++|+..+.+.+....-
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSp 127 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSP 127 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCH
Confidence 112345788999999999999999999998876655443
No 33
>smart00061 MATH meprin and TRAF homology.
Probab=88.71 E-value=1.9 Score=37.49 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=36.1
Q ss_pred EEeccccccCCCCcccCcceeecccceEEEEEeecCCCCCccceeeeeEEe
Q 003235 702 IEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHR 752 (837)
Q Consensus 702 vef~~v~~l~~~~~~~s~~~~yaGs~~~~~~q~~~~~~~~~~~~lg~~lhr 752 (837)
=.|.|+..|++++..+|++.-..|=.|.+.+..- + .-|++||+=
T Consensus 4 ~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~-~~lsl~L~~ 47 (95)
T smart00061 4 HTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------N-GFLSLYLHC 47 (95)
T ss_pred eEEEchhhcccCceEeCChhEEcCceeEEEEEEc------C-CEEEEEEEe
Confidence 3688999999999999999999999999887643 1 359999974
No 34
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.24 E-value=1.1 Score=39.91 Aligned_cols=43 Identities=21% Similarity=0.472 Sum_probs=32.7
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHH
Q 003235 130 KLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQ 172 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il 172 (837)
.++.+.+.+|+.||++|+++.|.+.|+..+...+...+.-++.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir 52 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIR 52 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3467789999999999999999999999999877655544433
No 35
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=85.21 E-value=5.9 Score=40.94 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=72.2
Q ss_pred cEEEEEcCeEEEEehhhhcc-C-HHHHHhhccccc---cCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCchhHHH
Q 003235 64 DIIVHVMGSTYHLHRLILSR-S-SYFRNMLHDHWK---EASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFR 138 (837)
Q Consensus 64 DVtLvV~G~~f~AHRvILAA-S-~YFraMFss~~k---ES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~dnVle 138 (837)
=|.+.|+|..|---|.-|.. + .|...+....+. .+...--.|- +-+|.-|..+|+|+-.|++.++.-.-..
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI----DRDP~~FgpvLNylRhgklvl~~l~eeG 97 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI----DRDPFYFGPVLNYLRHGKLVLNKLSEEG 97 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe----ccCcchHHHHHHHHhcchhhhhhhhhhc
Confidence 36778899999999999986 5 555555544321 1111112232 5688999999999999999999866677
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhc
Q 003235 139 VLAAASFLDLQDLCAICTDFIISE 162 (837)
Q Consensus 139 LL~AAd~LqL~~Lk~lCeefL~s~ 162 (837)
+|.-|++|.++.|.++..+.|.+.
T Consensus 98 vL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 98 VLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred cchhhhccCChHHHHHHHHHHHHH
Confidence 999999999999999999988874
No 36
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=84.76 E-value=14 Score=35.55 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=68.0
Q ss_pred CCceeEEEeccccccC--CCCcccCcceeeccc----ceEEEEEe-ecCCCCCccceeeeeEEeecCcCCCCccccceee
Q 003235 696 PPFRFGIEFEDVHRLS--DGQVKHSPEYFYAGS----LWKVSVQA-FNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYV 768 (837)
Q Consensus 696 ppfRF~vef~~v~~l~--~~~~~~s~~~~yaGs----~~~~~~q~-~~~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~ 768 (837)
++|-|..++.+-..++ .++.++| ..|.+|. .|.+.+-- =++++ ...-|.+||+-.+.+
T Consensus 3 ~~~~~~w~I~~fS~~~~~~~~~i~S-~~F~vgg~~~~~W~l~~yP~G~~~~--~~~~iSlyL~l~~~~------------ 67 (139)
T cd03774 3 VKFCYMWTISNFSFCREEMGEVIKS-STFSSGANDKLKWCLRVNPKGLDEE--SKDYLSLYLLLVSCP------------ 67 (139)
T ss_pred eEEEEEEEECCchhhhhcCCCEEEC-CCeecCCcCCceEEEEEeCCCCCCC--CCCeEEEEEEEccCC------------
Confidence 5777888888888765 4556667 5566665 69876531 11111 124589999874321
Q ss_pred cCccceEEEEEEEccCCCceEEeeeccccCCCCCCCCCccchhhhhhhHHHH----hhhcccceEEEEEEee
Q 003235 769 DSREKVTARYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELA----DILQNGTLRVAAVVQL 836 (837)
Q Consensus 769 D~R~~v~a~f~~~c~s~~~~~~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~~----~~~~~~~l~~~~v~~~ 836 (837)
...|+|.|++.=-.+.+.-......+. ...+...+.|||..-.-.++|. ..+.+.+|.|-+-|..
T Consensus 68 --~~~v~a~f~~~l~n~~~~~~~~~~~~~-~~~f~~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V 136 (139)
T cd03774 68 --KSEVRAKFKFSILNAKGEETKAMESQR-AYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 136 (139)
T ss_pred --CCcEEEEEEEEEEecCCCeeeeecccC-cEeCCCCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence 123566665543333322111111111 1222345799999855555553 3568888877666543
No 37
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=79.79 E-value=29 Score=33.37 Aligned_cols=122 Identities=19% Similarity=0.374 Sum_probs=70.0
Q ss_pred eeEEEeccccccCCCCcccCcceeecccceEEEEEeecCCCCCccceeeeeEEeecCcCCCCccccceeecCccceEEEE
Q 003235 699 RFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTARY 778 (837)
Q Consensus 699 RF~vef~~v~~l~~~~~~~s~~~~yaGs~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R~~v~a~f 778 (837)
+|..+..+...+ ++..+|++.-=+|-.|.+.+----..+ ..-|.+||.=.+.+.... +..+-..|+|.|
T Consensus 2 ~f~w~I~~fS~~--~~~~~S~~F~vGG~~W~l~~yP~G~~~---~~~iSlyL~l~~~~~~~~------~~~~~~~v~a~f 70 (134)
T cd03775 2 SFTWRIKNWSEL--EKKVHSPKFKCGGFEWRILLFPQGNSQ---TGGVSIYLEPHPEEEEKA------PLDEDWSVCAQF 70 (134)
T ss_pred cEEEEECCcccC--CcceeCCCEEECCeeEEEEEeCCCCCC---CCeEEEEEEecCcccccc------cCCCCCeEEEEE
Confidence 467777777776 467889988888899998764321111 246999996543222111 111111255555
Q ss_pred --EEEccCCCce-EEeeeccccCCCCCCCCCccchhhhhhhHHHHh--------hhcccceEEEEEEe
Q 003235 779 --QLICPSKREV-MVFGSFKQRGTLLPKAPKGWGWRTALLFDELAD--------ILQNGTLRVAAVVQ 835 (837)
Q Consensus 779 --~~~c~s~~~~-~~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~~~--------~~~~~~l~~~~v~~ 835 (837)
.|..+..... +.- ... ..+-...++|||..-+-.++|.+ .+.+++|.|-|.|+
T Consensus 71 ~~~l~n~~~~~~~~~~-~~~---~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 71 ALVISNPGDPSIQLSN-VAH---HRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEEEEcCCCCccceEc-cce---eEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 5566642211 110 111 11112347899998887888763 45788888777653
No 38
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=77.83 E-value=1.8 Score=49.31 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCcEEEEE-cCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCchhHHHH
Q 003235 62 FSDIIVHV-MGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRV 139 (837)
Q Consensus 62 fSDVtLvV-~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~dnVleL 139 (837)
..|+++.. .|+.|-|||+.|++ |++|...+..-+. ...+|+-. .+-+.+|..+|+|+|-..-.+-.+.-.++
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~----~v~~~~f~~flk~lyl~~na~~~~qynal 222 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAH----RVILSAFSPFLKQLYLNTNAEWKDQYNAL 222 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhh----hhhHhhhhHHHHHHHHhhhhhhhhHHHHH
Confidence 34888866 67889999999985 7666544433221 22344333 57789999999999977444444555778
Q ss_pred HHHHHhcChHHHHHH
Q 003235 140 LAAASFLDLQDLCAI 154 (837)
Q Consensus 140 L~AAd~LqL~~Lk~l 154 (837)
+.+..+|++..|...
T Consensus 223 lsi~~kF~~e~l~~~ 237 (516)
T KOG0511|consen 223 LSIEVKFSKEKLSLE 237 (516)
T ss_pred HhhhhhccHHHhHHH
Confidence 888888888776543
No 39
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=68.28 E-value=44 Score=32.34 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=24.1
Q ss_pred CCCccchhhhhhhHHHHh--hhcccceEEEEEE
Q 003235 804 APKGWGWRTALLFDELAD--ILQNGTLRVAAVV 834 (837)
Q Consensus 804 ~~~~wgwrs~~l~~e~~~--~~~~~~l~~~~v~ 834 (837)
..++|||+.-.-.++|.+ .+++.+|.|-+.|
T Consensus 116 ~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 116 NNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred CCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 458999999888888865 5688888776654
No 40
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=67.03 E-value=10 Score=42.50 Aligned_cols=88 Identities=9% Similarity=0.128 Sum_probs=65.5
Q ss_pred CCCCCcEEEEEcCeEEEEehhhhcc--CHHHHHhhccccccC---CCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCc
Q 003235 59 SGSFSDIIVHVMGSTYHLHRLILSR--SSYFRNMLHDHWKEA---SAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLND 133 (837)
Q Consensus 59 ng~fSDVtLvV~G~~f~AHRvILAA--S~YFraMFss~~kES---~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~ 133 (837)
.+.---++..+++..|-+.+.+|.+ -.-.-+||.+++.-. ...+.++. ++++..+|+.||+|.-+|.+....
T Consensus 92 pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA---dGi~s~vFRAILdYYksG~iRCP~ 168 (438)
T KOG3840|consen 92 PGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA---DGMTSSCFRAILDYYQSGTMRCPS 168 (438)
T ss_pred CCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh---cchhHHHHHHHHHHHhcCceeCCC
Confidence 3444457788899999999999975 445667776643221 22345554 589999999999999999997644
Q ss_pred -hhHHHHHHHHHhcChH
Q 003235 134 -ANAFRVLAAASFLDLQ 149 (837)
Q Consensus 134 -dnVleLL~AAd~LqL~ 149 (837)
-.+.+|-+|+|||.++
T Consensus 169 ~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 169 SVSVSELREACDYLLVP 185 (438)
T ss_pred CCchHHHHhhcceEEee
Confidence 5688999999998776
No 41
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=66.88 E-value=2.3 Score=47.69 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=93.4
Q ss_pred cEEEEEcCeEEEEehhhhc-cCHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCch--hHHHHH
Q 003235 64 DIIVHVMGSTYHLHRLILS-RSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDA--NAFRVL 140 (837)
Q Consensus 64 DVtLvV~G~~f~AHRvILA-AS~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~d--nVleLL 140 (837)
|.++......+.+|+.+|+ +|+.|..+....-..+....+... .++..++..+..++|.. ++-.+. ....++
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll 102 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL----GVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLL 102 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceee----cccccccchhhhhhccc-hhhhHHHHHHHHHH
Confidence 3444455667999999998 577776665443222233445554 67788999999999988 433332 356677
Q ss_pred HHHHhcChHHHHHHHHHHHHh-ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc
Q 003235 141 AAASFLDLQDLCAICTDFIIS-ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG 199 (837)
Q Consensus 141 ~AAd~LqL~~Lk~lCeefL~s-~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF 199 (837)
.+...+.++.++.-|...+.. .++..+++..+..+..+.. ..|..++...|...+
T Consensus 103 ~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~----~~lr~a~hss~~~~~ 158 (319)
T KOG1778|consen 103 ALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDF----SDLRRAKHSSIMLLF 158 (319)
T ss_pred hhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhccc----chHHHHHHHHHHHHH
Confidence 777788899999888888876 6788899999999999988 788888888877765
No 42
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=57.81 E-value=29 Score=37.31 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=63.0
Q ss_pred CCCcEE-EEEcCeEEEEehhhhcc--CHHHHHhhccccccCC--CCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCc--
Q 003235 61 SFSDII-VHVMGSTYHLHRLILSR--SSYFRNMLHDHWKEAS--APVVTLHVDDKNVNGEAIAMALAYLYGHRPKLND-- 133 (837)
Q Consensus 61 ~fSDVt-LvV~G~~f~AHRvILAA--S~YFraMFss~~kES~--~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~-- 133 (837)
.+.|++ +.++|.-|..-..-|.+ -....+||.+...-.. ....-| +=+-..|+.||+|+-+..+.+..
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-----DRDG~lFRyvL~~LRt~~l~lpe~f 80 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-----DRDGFLFRYVLDYLRTKALLLPEDF 80 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-----cCCcchHHHHHHHhcccccccchhh
Confidence 445544 45666655554444653 6677888876332222 223333 45667899999999997766665
Q ss_pred hhHHHHHHHHHhcChHHHHHHHHHHH
Q 003235 134 ANAFRVLAAASFLDLQDLCAICTDFI 159 (837)
Q Consensus 134 dnVleLL~AAd~LqL~~Lk~lCeefL 159 (837)
.++..|..-|++|+++.+...+.+-.
T Consensus 81 ~e~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 81 AEVERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred hhHHHHHHHHHHHccccHHHHHhccc
Confidence 67899999999999998877665543
No 43
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=42.68 E-value=2.2e+02 Score=27.79 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=25.3
Q ss_pred CCCccchhhhhhhHHHHh--hhcccceEEEEEEe
Q 003235 804 APKGWGWRTALLFDELAD--ILQNGTLRVAAVVQ 835 (837)
Q Consensus 804 ~~~~wgwrs~~l~~e~~~--~~~~~~l~~~~v~~ 835 (837)
.+++|||..-.-.++|.+ -+++.+|.|-+.|+
T Consensus 114 ~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 114 NPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred CCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 457899998888887765 56899998887764
No 44
>PHA03098 kelch-like protein; Provisional
Probab=42.20 E-value=73 Score=37.29 Aligned_cols=90 Identities=11% Similarity=0.157 Sum_probs=55.8
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccC---c-ccH-----HHHHHHHhhcccCCch-HHHHHHHHHHHHhcc
Q 003235 130 KLNDANAFRVLAAASFLDLQDLCAICTDFIISELW---T-SNL-----LAYQVFAENQDYGIHG-ERVRNACWGYLCQSG 199 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls---~-eN~-----L~Il~fAe~y~lgl~s-eeLk~aCl~FI~kNF 199 (837)
.++.+|+.+++.+|+.+.+..|++.|.+||.+++. . +.. -.+..+...-.+.+.+ ..+.+++..++..+.
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~ 183 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKK 183 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcCh
Confidence 47889999999999999999999999999987542 1 111 1111221111121211 567778888885541
Q ss_pred --------ccccccccCCCCHHHHHHhc
Q 003235 200 --------AVELKEVLPKLSPQTLHALL 219 (837)
Q Consensus 200 --------eV~~sEeFleLS~e~L~eLL 219 (837)
+++..=.|.-|+.+.+..+.
T Consensus 184 ~~r~~~~~~ll~~vR~~~~~~~~l~~~~ 211 (534)
T PHA03098 184 NNKYKDICLILKVLRITFLSEEGIKKLK 211 (534)
T ss_pred hhhHhHHHHHHhhccccccCHHHHHHHH
Confidence 34444455566666666554
No 45
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=30.60 E-value=29 Score=39.13 Aligned_cols=59 Identities=24% Similarity=0.257 Sum_probs=48.3
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccc-cccccCCCCHHHHHHh---ccCCCC
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVE-LKEVLPKLSPQTLHAL---LTSDEL 224 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~-~sEeFleLS~e~L~eL---LSSD~L 224 (837)
.++++|++.|+--++...+ +.|.+.|+.|+..|. +|+ ..-.+..|+.+.+..| +...+|
T Consensus 71 ~l~~~NvvsIliSS~FL~M----~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el 134 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQM----ESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEEL 134 (317)
T ss_pred cCCcCcEEEeEehhhhhcc----HHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccH
Confidence 6899999999999998877 999999999999995 554 4667778999888877 544444
No 46
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.05 E-value=99 Score=28.65 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=37.5
Q ss_pred cCCcEEEeeccHHHHHHHHHHhHHhCCcchhhhhh--hHHHHH-HHHHHHHHhh
Q 003235 437 EGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDG--LWLQML-LSQRVQQIVA 487 (837)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--lw~~~~-l~~~v~~i~a 487 (837)
++|.-+|..+..+.|..+++-.+++|||.+.+..- |.-|.. |.+|++++++
T Consensus 33 ~~g~R~Ys~~dv~~l~~I~~L~~~~G~~l~~i~~~l~l~~~~~~l~~~~~~~~~ 86 (98)
T cd01279 33 NGGGRRYSNNDLELLRQVQRLSQDEGFNLAGIKRIIELYPQVLLLQCRSCEHAT 86 (98)
T ss_pred CCCCeeECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46778888888888888877666799999988764 344544 6677776654
No 47
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=27.63 E-value=96 Score=27.34 Aligned_cols=57 Identities=21% Similarity=0.465 Sum_probs=38.6
Q ss_pred cCCCCCCCCCCchhhHHHHhhhcCC--cEEEeeccHHHHHHHHHHhHHhCCcchhhhhhh
Q 003235 415 NGNAKGNPGVSGEEYDAFVNIFEGG--SLLYCNMSFEALLNVRKQLEELGFPCKAVNDGL 472 (837)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 472 (837)
.+|..|+..+..++.++..+.+..+ -++||...-.+-... +.|.++||-++.+++|+
T Consensus 27 ~~hipgA~~ip~~~~~~~~~~~~~~~~vvl~c~~g~~a~~~a-~~L~~~G~~v~~l~GG~ 85 (90)
T cd01524 27 KGHIKGAINIPLDELRDRLNELPKDKEIIVYCAVGLRGYIAA-RILTQNGFKVKNLDGGY 85 (90)
T ss_pred cCCCCCCEeCCHHHHHHHHHhcCCCCcEEEEcCCChhHHHHH-HHHHHCCCCEEEecCCH
Confidence 3567777777766666655544433 489998765555444 47899999777787774
No 48
>PHA02790 Kelch-like protein; Provisional
Probab=26.10 E-value=1.1e+02 Score=35.89 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=31.5
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhcc
Q 003235 130 KLNDANAFRVLAAASFLDLQDLCAICTDFIISEL 163 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~L 163 (837)
.++.+|.+.++.+|+.|.+++|.+.+.+|+.+++
T Consensus 119 ~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 119 DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 6889999999999999999999999999998854
No 49
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=24.21 E-value=1.1e+02 Score=26.74 Aligned_cols=65 Identities=17% Similarity=0.398 Sum_probs=45.7
Q ss_pred eeeeeeee----c--CCCCCCCCCCchhhHHHHhhhcCCc--EEEeeccHHHHHHHHHHhHHhCCc-chhhhhhh
Q 003235 407 RVVDRRQV----N--GNAKGNPGVSGEEYDAFVNIFEGGS--LLYCNMSFEALLNVRKQLEELGFP-CKAVNDGL 472 (837)
Q Consensus 407 ~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 472 (837)
.||+-|-. + +|..|+..+.-++...+.+-...+. ++||+--..+-. +-+.|.++|++ .+.+.+|+
T Consensus 18 ~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~~~~~~~ivv~c~~g~~s~~-a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 18 VLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGDLDRDRPVVVYCYHGNSSAQ-LAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred EEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhhcCCCCCEEEEeCCCChHHH-HHHHHHHcCCceEEEcCCCH
Confidence 46664432 3 7888888888777777776665554 899996655443 55688899995 77777775
No 50
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=22.61 E-value=78 Score=37.06 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=45.9
Q ss_pred CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhc-CCC------------CCCchhHHHHHHHHHhcChHH
Q 003235 84 SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYG-HRP------------KLNDANAFRVLAAASFLDLQD 150 (837)
Q Consensus 84 S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYT-GeL------------~Is~dnVleLL~AAd~LqL~~ 150 (837)
++-|++++..-. ..++.|. ++..+.+-.+|..... |-+ .+..+|+..++.+|.+|++++
T Consensus 93 ~eAF~~lLrYiY----tg~~~l~----~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~ 164 (620)
T KOG4350|consen 93 SEAFRALLRYIY----TGKIDLA----GVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTD 164 (620)
T ss_pred HHHHHHHHHHHh----hcceecc----cchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchH
Confidence 778888775422 2345555 5555544333332211 111 245678888999999999999
Q ss_pred HHHHHHHHHHhc
Q 003235 151 LCAICTDFIISE 162 (837)
Q Consensus 151 Lk~lCeefL~s~ 162 (837)
|.+.|..|+.++
T Consensus 165 Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 165 LTDYCMMFMDRN 176 (620)
T ss_pred HHHHHHHHHhcC
Confidence 999999999763
No 51
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=22.60 E-value=1.4e+02 Score=33.88 Aligned_cols=69 Identities=25% Similarity=0.280 Sum_probs=53.3
Q ss_pred Cceeeeeeeec----CCCCCCCCCCchhhHHHHhhhcC---C--------cEEEeeccHHHHHHHHHHhHHhCCcchhhh
Q 003235 405 GGRVVDRRQVN----GNAKGNPGVSGEEYDAFVNIFEG---G--------SLLYCNMSFEALLNVRKQLEELGFPCKAVN 469 (837)
Q Consensus 405 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (837)
|+.|..||... =...++..+++|..-++..|.|- | ++-.=.-++|.+..+-.+|+|.|||+-..-
T Consensus 19 ~~Gvi~r~~~t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~iG~~~G~~G 98 (317)
T COG2221 19 GYGVIKRRDGTYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGLPVGSTG 98 (317)
T ss_pred CCceeeeccCcEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHHHHcCCCCCCcc
Confidence 45778887655 22334557899999999999872 2 233444799999999999999999999999
Q ss_pred hhhH
Q 003235 470 DGLW 473 (837)
Q Consensus 470 ~~lw 473 (837)
|.+|
T Consensus 99 ~~vr 102 (317)
T COG2221 99 PAVR 102 (317)
T ss_pred hhhh
Confidence 9888
No 52
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=22.51 E-value=2e+02 Score=25.62 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=28.9
Q ss_pred cC-cccHHHHHHHHhhcccCCchHHHHHHHHHHHHhc
Q 003235 163 LW-TSNLLAYQVFAENQDYGIHGERVRNACWGYLCQS 198 (837)
Q Consensus 163 Ls-~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kN 198 (837)
+. .+++..++.+|..+++ +.|.+.|..+|.++
T Consensus 78 ~~~~~~~~~ll~lA~~~~~----~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADKLQI----PELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHHTTB----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCc----HHHHHHHHHHHHhC
Confidence 44 8899999999999998 99999999999875
No 53
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=21.77 E-value=1.1e+02 Score=27.08 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=23.4
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHhcc
Q 003235 137 FRVLAAASFLDLQDLCAICTDFIISEL 163 (837)
Q Consensus 137 leLL~AAd~LqL~~Lk~lCeefL~s~L 163 (837)
.+++.+|..++++.|.+.|.+||..++
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf 28 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNF 28 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 578899999999999999999999754
No 54
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=21.51 E-value=4.5e+02 Score=27.12 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=60.4
Q ss_pred ccCCCCcccCcceee-cccceEEEEEeecCCCCCccceeeeeEEeecCcCCC----C--ccccce-eecCccceEEEEEE
Q 003235 709 RLSDGQVKHSPEYFY-AGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITD----S--YRKVHM-YVDSREKVTARYQL 780 (837)
Q Consensus 709 ~l~~~~~~~s~~~~y-aGs~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~----~--~~~v~~-y~D~R~~v~a~f~~ 780 (837)
.+..+..++|++.|= .|=.|.|.+=---+.+ .+ .-|+||||=.+.+... | .+++.+ -+|..+.+..+-.+
T Consensus 17 ~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~-~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~LlDQ~~~~~~r~~~ 94 (167)
T cd03771 17 TTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YP-GYTGLYFHLCSGENDDVLEWPCPNRQATMTLLDQDPDIQQRMSN 94 (167)
T ss_pred cCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CC-CcceEEEEEecCCccccccCcceeEEEEEEEECCCCcccccCcc
Confidence 345677899987422 3556775543222222 22 4699999987644321 1 223322 23443322222221
Q ss_pred E---ccCC------CceEEeeeccccCCCCC-------CCCCccchhhhhhhHHHHh--hhcccceEEEEEE
Q 003235 781 I---CPSK------REVMVFGSFKQRGTLLP-------KAPKGWGWRTALLFDELAD--ILQNGTLRVAAVV 834 (837)
Q Consensus 781 ~---c~s~------~~~~~f~s~~~~~~~~~-------~~~~~wgwrs~~l~~e~~~--~~~~~~l~~~~v~ 834 (837)
. -|.+ ++.+.|..-..-|+-.. -.+.+|||..-.--++|-. -+++.+|-|-+-+
T Consensus 95 ~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~dtl~i~~~~ 166 (167)
T cd03771 95 QRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGDDLIILLDF 166 (167)
T ss_pred eEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCCEEEEEEEe
Confidence 1 1111 12222322111111111 2457999998887777744 3577777665543
Done!