Query 003235
Match_columns 837
No_of_seqs 326 out of 1902
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 18:09:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hve_A Gigaxonin; ubiquitin, c 100.0 2.2E-35 7.4E-40 303.7 9.4 230 46-283 15-251 (256)
2 3i3n_A Kelch-like protein 11; 100.0 3.6E-34 1.2E-38 298.5 13.1 228 49-280 19-255 (279)
3 3htm_A Speckle-type POZ protei 99.9 7.5E-26 2.6E-30 217.9 15.5 145 53-205 25-171 (172)
4 3hqi_A Speckle-type POZ protei 99.9 1.7E-23 5.7E-28 220.8 15.8 145 53-205 165-311 (312)
5 4eoz_A Speckle-type POZ protei 99.9 1.5E-23 5.1E-28 196.6 7.0 124 53-180 16-140 (145)
6 2vkp_A BTB/POZ domain-containi 99.8 3.6E-21 1.2E-25 173.1 12.0 104 55-163 1-109 (109)
7 2z8h_A Transcription regulator 99.8 2.8E-21 9.5E-26 182.4 11.2 118 46-168 20-138 (138)
8 2if5_A Zinc finger and BTB dom 99.8 6.7E-21 2.3E-25 174.7 13.0 104 52-159 15-119 (120)
9 1r29_A B-cell lymphoma 6 prote 99.8 9.4E-21 3.2E-25 175.6 13.4 107 51-162 18-126 (127)
10 2ppi_A Gigaxonin; BTB domain, 99.8 1.1E-20 3.6E-25 180.5 12.1 117 40-160 25-144 (144)
11 2yy9_A Zinc finger and BTB dom 99.8 1.3E-20 4.6E-25 177.5 9.2 108 51-166 14-122 (135)
12 3b84_A Zinc finger and BTB dom 99.8 2.6E-20 8.9E-25 171.6 9.5 102 52-161 14-116 (119)
13 1buo_A POZ domain, protein (pr 99.8 8.1E-20 2.8E-24 168.5 12.6 106 49-163 15-121 (121)
14 2vpk_A Myoneurin; transcriptio 99.8 8.5E-20 2.9E-24 166.7 11.7 103 52-160 12-115 (116)
15 3ohu_A Transcription regulator 99.8 1.9E-20 6.4E-25 173.1 3.7 105 49-159 19-125 (125)
16 2q81_A MIZ-1 protein; BTB/POZ 99.8 1.8E-19 6.2E-24 165.9 9.0 100 52-160 17-117 (119)
17 3ga1_A Nucleus accumbens-assoc 99.8 7.8E-20 2.7E-24 170.3 6.3 105 51-162 22-127 (129)
18 2ihc_A Transcription regulator 99.8 3.2E-20 1.1E-24 172.2 2.9 110 46-160 13-123 (124)
19 3m5b_A Zinc finger and BTB dom 99.7 2E-18 7E-23 160.3 7.6 92 57-161 25-117 (119)
20 3fkc_A Transcriptional regulat 99.7 1.3E-17 4.4E-22 153.6 11.1 100 45-153 14-115 (116)
21 2ast_A S-phase kinase-associat 99.3 7.5E-12 2.6E-16 122.0 11.2 106 65-174 3-137 (159)
22 2eqx_A Kelch repeat and BTB do 99.2 1.7E-12 5.8E-17 118.3 0.9 81 160-247 5-86 (105)
23 4ajy_C Transcription elongatio 98.9 2.4E-09 8.1E-14 96.4 9.3 80 65-148 4-97 (97)
24 1fs1_B SKP1, cyclin A/CDK2-ass 98.9 4E-09 1.4E-13 101.2 10.8 100 65-172 4-130 (141)
25 2p1m_A SKP1-like protein 1A; F 98.7 5.6E-09 1.9E-13 102.1 3.7 99 65-170 6-132 (160)
26 3v7d_A Suppressor of kinetocho 98.2 5.5E-06 1.9E-10 81.9 11.7 104 64-171 8-141 (169)
27 1hv2_A Elongin C, ELC1; protei 98.1 8.3E-06 2.8E-10 74.0 8.5 79 65-148 6-99 (99)
28 2fnj_C Transcription elongatio 98.0 9.3E-06 3.2E-10 73.2 7.2 80 65-148 3-96 (96)
29 3drz_A BTB/POZ domain-containi 98.0 4.2E-05 1.4E-09 70.0 11.7 93 64-161 7-106 (107)
30 1vcb_B Protein (elongin C); tu 97.6 0.00012 4E-09 68.0 6.9 80 65-148 19-112 (112)
31 3drx_A BTB/POZ domain-containi 97.0 0.0025 8.5E-08 65.0 9.8 92 65-161 14-112 (202)
32 3kvt_A Potassium channel prote 95.3 0.011 3.9E-07 54.9 4.1 92 65-161 7-104 (115)
33 1s1g_A Potassium voltage-gated 94.8 0.077 2.6E-06 50.0 8.2 90 64-160 14-110 (124)
34 1t1d_A Protein (potassium chan 94.7 0.057 1.9E-06 49.1 6.7 83 65-152 3-90 (100)
35 2foj_A Ubiquitin carboxyl-term 94.0 0.28 9.7E-06 46.3 10.2 124 696-836 17-147 (155)
36 2nz0_B Potassium voltage-gated 93.9 0.099 3.4E-06 50.3 6.8 83 64-151 36-121 (140)
37 1nn7_A Potassium channel KV4.2 93.7 0.06 2.1E-06 49.2 4.8 82 65-151 2-86 (105)
38 3ivv_A Speckle-type POZ protei 93.7 0.33 1.1E-05 45.5 9.9 120 699-837 12-143 (145)
39 3hqi_A Speckle-type POZ protei 91.2 0.73 2.5E-05 48.2 9.6 118 699-835 8-137 (312)
40 2f1z_A Ubiquitin carboxyl-term 84.3 2.5 8.7E-05 47.6 9.1 123 696-835 29-158 (522)
41 2r9r_B Paddle chimera voltage 77.7 4.7 0.00016 45.9 8.3 84 64-152 53-141 (514)
42 2eqx_A Kelch repeat and BTB do 71.7 4.8 0.00016 36.0 5.2 36 128-163 5-40 (105)
43 1ca9_A TRAF2, protein (TNF rec 71.6 7.5 0.00026 38.1 7.0 128 699-836 44-189 (192)
44 4gjh_A TNF receptor-associated 71.0 18 0.00063 35.0 9.6 127 700-836 26-172 (178)
45 4ghu_A TNF receptor-associated 70.8 15 0.00052 36.5 9.1 127 700-836 42-186 (198)
46 1d00_A Tumor necrosis factor r 67.7 5.1 0.00018 38.1 4.7 127 700-835 21-164 (168)
47 3i3n_A Kelch-like protein 11; 65.4 33 0.0011 35.1 10.6 99 130-228 138-254 (279)
48 2vkp_A BTB/POZ domain-containi 59.2 17 0.00058 31.6 6.1 33 162-198 76-108 (109)
49 3htm_A Speckle-type POZ protei 54.4 12 0.00041 35.1 4.6 34 130-163 131-164 (172)
50 1r29_A B-cell lymphoma 6 prote 49.4 29 0.00099 31.1 6.1 33 162-198 94-126 (127)
51 2gkw_A TNF receptor-associated 45.0 68 0.0023 31.5 8.5 128 697-835 39-185 (192)
52 2vpk_A Myoneurin; transcriptio 41.7 40 0.0014 29.7 5.7 32 162-197 85-116 (116)
53 2yy9_A Zinc finger and BTB dom 41.0 23 0.00079 32.5 4.2 34 162-199 86-119 (135)
54 1lb6_A TNF receptor-associated 38.1 89 0.003 29.3 7.9 33 805-837 122-156 (160)
55 2q81_A MIZ-1 protein; BTB/POZ 37.8 52 0.0018 29.3 5.9 40 153-196 75-117 (119)
56 3b84_A Zinc finger and BTB dom 37.6 32 0.0011 30.7 4.4 33 162-198 85-117 (119)
57 1buo_A POZ domain, protein (pr 36.6 60 0.002 28.9 6.1 32 162-197 88-119 (121)
58 2z8h_A Transcription regulator 32.7 38 0.0013 31.0 4.2 34 162-199 100-133 (138)
59 1flk_A TNF receptor associated 32.0 92 0.0031 31.4 7.2 131 696-835 74-221 (228)
60 2if5_A Zinc finger and BTB dom 31.4 81 0.0028 27.8 6.0 30 162-195 90-119 (120)
61 2ast_A S-phase kinase-associat 29.8 1.1E+02 0.0037 29.2 6.9 87 131-231 49-150 (159)
62 3hve_A Gigaxonin; ubiquitin, c 24.2 48 0.0016 33.3 3.5 34 130-163 130-163 (256)
63 2ppi_A Gigaxonin; BTB domain, 22.2 67 0.0023 29.8 3.8 30 162-195 114-143 (144)
64 2dko_A Caspase-3; low barrier 21.9 56 0.0019 31.2 3.3 36 450-487 42-77 (146)
No 1
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=100.00 E-value=2.2e-35 Score=303.67 Aligned_cols=230 Identities=22% Similarity=0.244 Sum_probs=182.7
Q ss_pred hhhhhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccc--cCCCCEEEeecCCCCCCHHHHHHHHH
Q 003235 46 TSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWK--EASAPVVTLHVDDKNVNGEAIAMALA 122 (837)
Q Consensus 46 ~sLl~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~k--ES~~~eI~L~I~d~dVs~eaF~~LLe 122 (837)
...+...+.++++++.+|||+|.++|++|+|||+|||+ |+||++||.+++. |+...+|+++ ++++++|+.+|+
T Consensus 15 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~----~v~~~~f~~ll~ 90 (256)
T 3hve_A 15 AARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE----GISVMVMREILD 90 (256)
T ss_dssp HHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS----SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC----CCCHHHHHHHHh
Confidence 33333457789999999999999999999999999996 9999999999887 6677889998 899999999999
Q ss_pred HHhcCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-cc
Q 003235 123 YLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AV 201 (837)
Q Consensus 123 FIYTGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV 201 (837)
|+|||++.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|++ ..|.+.|..||.+|| .+
T Consensus 91 ~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~----~~L~~~~~~~i~~~f~~v 166 (256)
T 3hve_A 91 YIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCL----HHVHYLATEYLETHFRDV 166 (256)
T ss_dssp HHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCc----HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999998 78
Q ss_pred ccccccCCCCHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhCccccccCCCCCC--CCCCCCcccccccchhhHHHHHH
Q 003235 202 ELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQGS--SSSKAGADDLEGQNAARTLLVEL 279 (837)
Q Consensus 202 ~~sEeFleLS~e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d~~~l~~~~~~~~s--~~~~L~~~~L~~q~a~~~lL~Ei 279 (837)
..+++|.+|+.+.+..||++|+|+|.+|.+||+++++|+++++..++.+...... +...+...+|.+....++++.+-
T Consensus 167 ~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~VRf~~l~~~~l~~~v~~~~l~~~~ 246 (256)
T 3hve_A 167 SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREI 246 (256)
T ss_dssp TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCSTTTHHHHHHHHHHHTTCC-CHHHHHHTSTTHHHH
T ss_pred hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhcChHHHhh
Confidence 8899999999999999999999999999999999999999987544332211111 11567788888888888888876
Q ss_pred -hhhc
Q 003235 280 -ADCV 283 (837)
Q Consensus 280 -~d~~ 283 (837)
.+|.
T Consensus 247 ~~~c~ 251 (256)
T 3hve_A 247 VKECS 251 (256)
T ss_dssp HCC--
T ss_pred HHHHH
Confidence 4554
No 2
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=100.00 E-value=3.6e-34 Score=298.47 Aligned_cols=228 Identities=20% Similarity=0.218 Sum_probs=189.9
Q ss_pred hhHHHHhcccCCCCCcEEEEEc---CeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecC--CCCCCHHHHHHHHH
Q 003235 49 CDHIQMEGFNSGSFSDIIVHVM---GSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVD--DKNVNGEAIAMALA 122 (837)
Q Consensus 49 l~~v~lklf~ng~fSDVtLvV~---G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~--d~dVs~eaF~~LLe 122 (837)
+...+.++++++.+|||+|+++ |++|+|||+|||+ |+||++||.++|+|+...+|+|+.. ++++++++|+.+|+
T Consensus 19 ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~ 98 (279)
T 3i3n_A 19 LSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIE 98 (279)
T ss_dssp HHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHH
Confidence 3334778899999999999998 9999999999996 9999999999999999999999611 12799999999999
Q ss_pred HHhcCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-cc
Q 003235 123 YLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AV 201 (837)
Q Consensus 123 FIYTGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV 201 (837)
|+|||++.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|++ ..|.+.|..||.+|| .+
T Consensus 99 ~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~----~~L~~~~~~~i~~~f~~v 174 (279)
T 3i3n_A 99 YMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTL----SQLALKAADMIRRNFHKV 174 (279)
T ss_dssp HHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTC----HHHHHHHHHHHHHTHHHH
T ss_pred hhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCc----HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999998 78
Q ss_pred ccccccCCCCHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhCccccccCCCCCC--CCCCCCcccccccchhhHHHHHH
Q 003235 202 ELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQGS--SSSKAGADDLEGQNAARTLLVEL 279 (837)
Q Consensus 202 ~~sEeFleLS~e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d~~~l~~~~~~~~s--~~~~L~~~~L~~q~a~~~lL~Ei 279 (837)
..+++|.+|+.+.+..||++|+|+|.+|.+||+++++|+++++..++.+...... +..++...+|.+....++++..-
T Consensus 175 ~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~VRf~l~~~~~L~~~v~~~~l~~~~ 254 (279)
T 3i3n_A 175 IQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANN 254 (279)
T ss_dssp TTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTTSCGGGSCHHHHHHTTTTSHHHHTC
T ss_pred hcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhccchhcCC
Confidence 9999999999999999999999999999999999999999997655433322221 22556677766655555555443
Q ss_pred h
Q 003235 280 A 280 (837)
Q Consensus 280 ~ 280 (837)
.
T Consensus 255 ~ 255 (279)
T 3i3n_A 255 E 255 (279)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.93 E-value=7.5e-26 Score=217.91 Aligned_cols=145 Identities=21% Similarity=0.311 Sum_probs=134.5
Q ss_pred HHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCC
Q 003235 53 QMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKL 131 (837)
Q Consensus 53 ~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~I 131 (837)
+.++++++.+|||+|.++|++|+|||.||++ |+||++||.++++|+...+|.|+ ++++++|+.+|+|+|+|++.+
T Consensus 25 l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~----~~~~~~f~~~l~~~Yt~~~~~ 100 (172)
T 3htm_A 25 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN----DVEPEVFKEMMCFIYTGKAPN 100 (172)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEEC----SSCHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEec----CCCHHHHHHHHHHHhCCCCCC
Confidence 5577889999999999999999999999986 99999999999999999999998 999999999999999999999
Q ss_pred CchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-cccccc
Q 003235 132 NDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKE 205 (837)
Q Consensus 132 s~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sE 205 (837)
+.+++.+|+.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|++ +.|++.|.+||.+|| +++.++
T Consensus 101 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~----~~L~~~~~~~i~~~~~~v~~s~ 171 (172)
T 3htm_A 101 LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSA----DQLKTQAVDFINYHATDVLETS 171 (172)
T ss_dssp GGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTC----HHHHHHHHHHHHHTC-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999998 999999999999997 565543
No 4
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.90 E-value=1.7e-23 Score=220.78 Aligned_cols=145 Identities=21% Similarity=0.311 Sum_probs=129.5
Q ss_pred HHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCC
Q 003235 53 QMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKL 131 (837)
Q Consensus 53 ~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~I 131 (837)
+.++++++.+|||+|.++|++|+|||.|||+ |+||++||.++++|+...+|.|+ ++++++|+.+|+|||||.+.+
T Consensus 165 l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~----~~~~~~f~~~L~~iYt~~~~~ 240 (312)
T 3hqi_A 165 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN----DVEPEVFKEMMCFIYTGKAPN 240 (312)
T ss_dssp HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEEC----SSCHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEec----CCCHHHHHHHHHhhcCCCCCC
Confidence 5567789999999999999999999999996 99999999999999999999998 999999999999999999999
Q ss_pred CchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-cccccc
Q 003235 132 NDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKE 205 (837)
Q Consensus 132 s~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sE 205 (837)
+.+++.+|+.+|++|+++.|+..|+++|.+.++.+||+.++.+|+.|++ ..|++.|.+||.+|+ .++.++
T Consensus 241 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~----~~L~~~~~~~i~~~~~~v~~s~ 311 (312)
T 3hqi_A 241 LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSA----DQLKTQAVDFINYHATDVLETS 311 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTC----HHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999998 999999999999997 565544
No 5
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.88 E-value=1.5e-23 Score=196.56 Aligned_cols=124 Identities=23% Similarity=0.338 Sum_probs=97.6
Q ss_pred HHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCC
Q 003235 53 QMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKL 131 (837)
Q Consensus 53 ~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~I 131 (837)
+.++++++.+|||+|.++|+.|+|||.||++ |+||++||.+++.|+...+|.++ ++++++|+.+|+|+|+|++.+
T Consensus 16 l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~----~~~~~~~~~~l~~~Y~~~~~~ 91 (145)
T 4eoz_A 16 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN----DVEPEVFKEMMCFIYTGKAPN 91 (145)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEEC----SSCHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEec----CCCHHHHHHHHHhhccCccCC
Confidence 4567889999999999999999999999985 99999999999999888999998 899999999999999999999
Q ss_pred CchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhccc
Q 003235 132 NDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDY 180 (837)
Q Consensus 132 s~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~l 180 (837)
+.+++.+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|+.|++
T Consensus 92 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~ 140 (145)
T 4eoz_A 92 LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSA 140 (145)
T ss_dssp GGGTHHHHHHHHHHTTCHHHHHHHHCC----------------------
T ss_pred cHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999999987
No 6
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=173.07 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=92.9
Q ss_pred hcccCCCCCcEEEEEcC----eEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCC
Q 003235 55 EGFNSGSFSDIIVHVMG----STYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRP 129 (837)
Q Consensus 55 klf~ng~fSDVtLvV~G----~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL 129 (837)
++++++.+|||+|.+++ +.|+|||.|||+ |+||++||.++|+|+. .+|.|+ ++++++|+.+|+|+|||++
T Consensus 1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~----~~~~~~f~~~l~~iYt~~~ 75 (109)
T 2vkp_A 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIP----DVEPAAFLILLKYMYSDEI 75 (109)
T ss_dssp CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEET----TSCHHHHHHHHHHHHHCCC
T ss_pred CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeC----CCCHHHHHHHHHHHcCCCc
Confidence 36789999999999988 899999999995 9999999999999988 899998 9999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhcc
Q 003235 130 KLNDANAFRVLAAASFLDLQDLCAICTDFIISEL 163 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~L 163 (837)
.++.+++.+++.+|++|+++.|++.|+++|.+.|
T Consensus 76 ~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 76 DLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998754
No 7
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.85 E-value=2.8e-21 Score=182.37 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=105.5
Q ss_pred hhhhhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHH
Q 003235 46 TSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYL 124 (837)
Q Consensus 46 ~sLl~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFI 124 (837)
...+...+.++++++.+|||+|.++|++|+|||+|||+ |+||++||.+++.+. .+|.++ .++++++|+.+|+||
T Consensus 20 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~---~~v~~~~~~~lL~~~ 94 (138)
T 2z8h_A 20 STNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLP---EEVTVKGFEPLIQFA 94 (138)
T ss_dssp HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECC---TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeC---CCCCHHHHHHHHHHh
Confidence 33333457788899999999999999999999999986 999999999988763 467773 289999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccH
Q 003235 125 YGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNL 168 (837)
Q Consensus 125 YTGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~ 168 (837)
|||++.++.+++.+|+.+|++|+++.|++.|++||.+.++.+|+
T Consensus 95 Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sna 138 (138)
T 2z8h_A 95 YTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTS 138 (138)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCCC
T ss_pred cCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999998873
No 8
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.84 E-value=6.7e-21 Score=174.68 Aligned_cols=104 Identities=23% Similarity=0.420 Sum_probs=95.2
Q ss_pred HHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCC
Q 003235 52 IQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPK 130 (837)
Q Consensus 52 v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~ 130 (837)
.+.++++++.+|||+|.++|++|+|||.||++ |+||++||.+++.|+...+|.|+ ++++++|+.+|+|+|||++.
T Consensus 15 ~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~----~~~~~~f~~ll~~~Yt~~~~ 90 (120)
T 2if5_A 15 GLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEID----FVSAEALTALMDFAYTATLT 90 (120)
T ss_dssp HHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECC----SSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeC----CCCHHHHHHHHHHHcCCCCc
Confidence 46678899999999999999999999999995 99999999999999999999998 89999999999999999999
Q ss_pred CCchhHHHHHHHHHhcChHHHHHHHHHHH
Q 003235 131 LNDANAFRVLAAASFLDLQDLCAICTDFI 159 (837)
Q Consensus 131 Is~dnVleLL~AAd~LqL~~Lk~lCeefL 159 (837)
++.+++.+++.+|++|+++.|++.|+++|
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999999999999997
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.84 E-value=9.4e-21 Score=175.61 Aligned_cols=107 Identities=22% Similarity=0.443 Sum_probs=100.6
Q ss_pred HHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEe-ecCCCCCCHHHHHHHHHHHhcCC
Q 003235 51 HIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTL-HVDDKNVNGEAIAMALAYLYGHR 128 (837)
Q Consensus 51 ~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L-~I~d~dVs~eaF~~LLeFIYTGe 128 (837)
..+.++++++.+|||+|.++|++|+|||+|||+ |+||++||.+++.| ...+|.| + ++++++|+.+|+|||||+
T Consensus 18 ~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~----~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 18 LNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDP----EINPEGFNILLDFMYTSR 92 (127)
T ss_dssp HHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCT----TSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCC----CCCHHHHHHHHHHHcCCC
Confidence 346788899999999999999999999999985 99999999999998 7789999 6 999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhc
Q 003235 129 PKLNDANAFRVLAAASFLDLQDLCAICTDFIISE 162 (837)
Q Consensus 129 L~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~ 162 (837)
+.++.+++.+|+.+|++|+++.|++.|+++|.++
T Consensus 93 ~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 93 LNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999753
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=180.54 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=99.7
Q ss_pred ccccchhhhhhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhcccccc--CCCCEEEeecCCCCCCHHH
Q 003235 40 ALDCNLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKE--ASAPVVTLHVDDKNVNGEA 116 (837)
Q Consensus 40 ~~~s~l~sLl~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kE--S~~~eI~L~I~d~dVs~ea 116 (837)
..+......+...+.++++++.+|||+|.++|++|+|||+|||+ |+||++||.+++.+ +...+|.|+ ++++++
T Consensus 25 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~----~v~~~~ 100 (144)
T 2ppi_A 25 VSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE----GISVMV 100 (144)
T ss_dssp CCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECC----SSCHHH
T ss_pred ecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeC----CCCHHH
Confidence 33444444444467789999999999999999999999999995 99999999998875 667889998 899999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHH
Q 003235 117 IAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFII 160 (837)
Q Consensus 117 F~~LLeFIYTGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~ 160 (837)
|+.+|+|||||++.++.+++.+|+.+|++|+++.|++.|++||+
T Consensus 101 f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 101 MREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp HHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999873
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.82 E-value=1.3e-20 Score=177.54 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=93.3
Q ss_pred HHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCC
Q 003235 51 HIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRP 129 (837)
Q Consensus 51 ~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL 129 (837)
..+.++++++.+|||+|.++|++|+|||+|||+ |+||++||.+++ ..+|+|+ ++++++|+.+|+|||||++
T Consensus 14 ~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~----~~~~~~f~~lL~fiYtg~~ 85 (135)
T 2yy9_A 14 QELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLP----AGFAEIFGLLLDFFYTGHL 85 (135)
T ss_dssp HHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEEC----GGGHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeC----CCCHHHHHHHHHHHhCCCC
Confidence 346788999999999999999999999999996 999999999876 4678998 8999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcc
Q 003235 130 KLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTS 166 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~e 166 (837)
.++.+++.+|+.+|++|+|+.|++.|++||.+.+...
T Consensus 86 ~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 86 ALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999998876543
No 12
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=171.57 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=94.4
Q ss_pred HHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCC
Q 003235 52 IQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPK 130 (837)
Q Consensus 52 v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~ 130 (837)
.+.++++++.+|||+|.++|++|+|||.|||+ |+||++||.+++ ..+|+|+ ++++++|+.+|+|||||++.
T Consensus 14 ~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~----~~~~~~f~~ll~~iYtg~~~ 85 (119)
T 3b84_A 14 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLP----AGFAEIFGLLLDFFYTGHLA 85 (119)
T ss_dssp HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEEC----GGGHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeC----CCCHHHHHHHHHHHcCCCCc
Confidence 46678899999999999999999999999996 999999998866 5679998 89999999999999999999
Q ss_pred CCchhHHHHHHHHHhcChHHHHHHHHHHHHh
Q 003235 131 LNDANAFRVLAAASFLDLQDLCAICTDFIIS 161 (837)
Q Consensus 131 Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s 161 (837)
++.+++.+++.+|++|+++.|++.|++||.+
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 13
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.81 E-value=8.1e-20 Score=168.48 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=96.9
Q ss_pred hhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcC
Q 003235 49 CDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGH 127 (837)
Q Consensus 49 l~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTG 127 (837)
+...+.++++++.+|||+|.++|++|+|||.|||+ |+||++||.++ ..+|+++ ++++++|+.+|+|+|||
T Consensus 15 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~----~~~~~~f~~ll~~~Ytg 85 (121)
T 1buo_A 15 LLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLD----FLSPKTFQQILEYAYTA 85 (121)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC----SSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeC----CCCHHHHHHHHHhhcCC
Confidence 33346788899999999999999999999999985 99999999863 5688998 99999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhcc
Q 003235 128 RPKLNDANAFRVLAAASFLDLQDLCAICTDFIISEL 163 (837)
Q Consensus 128 eL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~L 163 (837)
++.++.+++.+++.+|++|+++.|++.|+++|.+.|
T Consensus 86 ~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 86 TLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp CCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998643
No 14
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.81 E-value=8.5e-20 Score=166.66 Aligned_cols=103 Identities=19% Similarity=0.308 Sum_probs=94.3
Q ss_pred HHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCC
Q 003235 52 IQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPK 130 (837)
Q Consensus 52 v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~ 130 (837)
.+.++++++.+|||+|.++|++|+|||.|||+ |+||++||.++ ....|.|++ +++++++|+.+|+|+|||++.
T Consensus 12 ~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~--~~~~~~~f~~ll~~~Yt~~~~ 85 (116)
T 2vpk_A 12 RLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQ--SQVKADGFQKLLEFIYTGTLN 85 (116)
T ss_dssp HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCT--TTCCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeec--CCCCHHHHHHHHHHHcCCCcc
Confidence 46688899999999999999999999999985 99999999876 355677763 379999999999999999999
Q ss_pred CCchhHHHHHHHHHhcChHHHHHHHHHHHH
Q 003235 131 LNDANAFRVLAAASFLDLQDLCAICTDFII 160 (837)
Q Consensus 131 Is~dnVleLL~AAd~LqL~~Lk~lCeefL~ 160 (837)
++.+++.+++.+|++|+++.|++.|+++|.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999999999986
No 15
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.79 E-value=1.9e-20 Score=173.13 Aligned_cols=105 Identities=24% Similarity=0.339 Sum_probs=96.1
Q ss_pred hhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCC-CCHHHHHHHHHHHhc
Q 003235 49 CDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKN-VNGEAIAMALAYLYG 126 (837)
Q Consensus 49 l~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~d-Vs~eaF~~LLeFIYT 126 (837)
+...+.++++++.+|||+|.++|++|+|||.|||+ |+||++||.+++.+ ..+|.++ + +++++|+.+|+||||
T Consensus 19 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~----~~~~~~~f~~~l~~iYt 92 (125)
T 3ohu_A 19 ILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLP----EEVTARGFGPLLQFAYT 92 (125)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECC----TTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeC----CCCCHHHHHHHHHhHcC
Confidence 33346788899999999999999999999999996 99999999998876 6688887 6 999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHhcChHHHHHHHHHHH
Q 003235 127 HRPKLNDANAFRVLAAASFLDLQDLCAICTDFI 159 (837)
Q Consensus 127 GeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL 159 (837)
|++.++.+++.+++.+|++|+++.|++.|++||
T Consensus 93 g~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 93 AKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp SEEEECTTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred CceEECHHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 999999999999999999999999999998764
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.78 E-value=1.8e-19 Score=165.94 Aligned_cols=100 Identities=27% Similarity=0.438 Sum_probs=92.4
Q ss_pred HHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCC
Q 003235 52 IQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPK 130 (837)
Q Consensus 52 v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~ 130 (837)
.+.++++++.+|||+|.++|++|+|||.|||+ |+||++||.+. ..+|.++ ++++++|+.+|+|+|||++.
T Consensus 17 ~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~----~~~~~~f~~ll~~~Ytg~~~ 87 (119)
T 2q81_A 17 QLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLD----ISNAAGLGQVLEFMYTAKLS 87 (119)
T ss_dssp HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGG----GCCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC----CCCHHHHHHHHHHHcCCCCc
Confidence 46678899999999999999999999999996 99999999862 3467776 89999999999999999999
Q ss_pred CCchhHHHHHHHHHhcChHHHHHHHHHHHH
Q 003235 131 LNDANAFRVLAAASFLDLQDLCAICTDFII 160 (837)
Q Consensus 131 Is~dnVleLL~AAd~LqL~~Lk~lCeefL~ 160 (837)
++.+++.+++.+|++|+|+.|++.|++||.
T Consensus 88 i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999999999985
No 17
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.78 E-value=7.8e-20 Score=170.35 Aligned_cols=105 Identities=27% Similarity=0.452 Sum_probs=89.6
Q ss_pred HHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCC
Q 003235 51 HIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRP 129 (837)
Q Consensus 51 ~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL 129 (837)
..+.++++++.+|||+|.++|++|+|||.|||+ |+||++||.++ ...+|.|+ +++++++|+.+|+|||||++
T Consensus 22 ~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~---~~~~~~~f~~ll~~iYtg~~ 94 (129)
T 3ga1_A 22 ECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELP---AAVQPQSFQQILSFCYTGRL 94 (129)
T ss_dssp HHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECC---TTCCHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEEC---CCCCHHHHHHHHHHHhCCcc
Confidence 346678899999999999999999999999995 99999999876 56788884 27999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhc
Q 003235 130 KLNDANAFRVLAAASFLDLQDLCAICTDFIISE 162 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~ 162 (837)
.++.+++.+++.+|++|+++.|++.|++||.+.
T Consensus 95 ~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 95 SMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp ECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 18
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.78 E-value=3.2e-20 Score=172.16 Aligned_cols=110 Identities=19% Similarity=0.310 Sum_probs=95.2
Q ss_pred hhhhhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHH
Q 003235 46 TSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYL 124 (837)
Q Consensus 46 ~sLl~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFI 124 (837)
.+.+...+.++++++.+|||+|.++|++|+|||.|||+ |+||++||.+++.++ .+|.++ .++++++|+.+|+|+
T Consensus 13 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~---~~v~~~~f~~lL~~i 87 (124)
T 2ihc_A 13 STNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLP---EEVTVKGFEPLIQFA 87 (124)
T ss_dssp HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECC---TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeec---CCcCHHHHHHHHHHh
Confidence 33333457788999999999999999999999999996 999999999988764 467773 289999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHH
Q 003235 125 YGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFII 160 (837)
Q Consensus 125 YTGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~ 160 (837)
|||++.++.+++.+|+.+|++|+++.|++.|++||+
T Consensus 88 Ytg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 88 YTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred cCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999874
No 19
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.74 E-value=2e-18 Score=160.33 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=83.7
Q ss_pred ccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCchh
Q 003235 57 FNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDAN 135 (837)
Q Consensus 57 f~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~dn 135 (837)
+.++.+|||+|.++|++|+|||+|||+ |+||++ ...+|+|+ ++++++|+.+|+|+|||++.++.++
T Consensus 25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~----~v~~~~f~~ll~fiYtg~~~i~~~~ 91 (119)
T 3m5b_A 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGE----GISPSTFAQLLNFVYGESVELQPGE 91 (119)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCS----SCCHHHHHHHHHHHTTCCEEECGGG
T ss_pred HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeC----CCCHHHHHHHHHHHcCCCcCcCHHH
Confidence 457899999999999999999999996 999985 23567777 9999999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHh
Q 003235 136 AFRVLAAASFLDLQDLCAICTDFIIS 161 (837)
Q Consensus 136 VleLL~AAd~LqL~~Lk~lCeefL~s 161 (837)
+.+++.+|++|+++.|++.|++++.+
T Consensus 92 v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 92 LRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999999999875
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.73 E-value=1.3e-17 Score=153.60 Aligned_cols=100 Identities=23% Similarity=0.342 Sum_probs=89.3
Q ss_pred hhhhhhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHH
Q 003235 45 LTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAY 123 (837)
Q Consensus 45 l~sLl~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeF 123 (837)
+...+...+.++++++.+|||+|.++|+.|+|||.|||+ |+||++||.++ ..+|.++ ++++++|+.+|+|
T Consensus 14 ~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~----~~~~~~f~~~l~~ 84 (116)
T 3fkc_A 14 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELS----FIRAEIFAEILNY 84 (116)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC----SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC----CCCHHHHHHHHHh
Confidence 333333446788899999999999999999999999986 99999999874 5689998 9999999999999
Q ss_pred HhcCCC-CCCchhHHHHHHHHHhcChHHHHH
Q 003235 124 LYGHRP-KLNDANAFRVLAAASFLDLQDLCA 153 (837)
Q Consensus 124 IYTGeL-~Is~dnVleLL~AAd~LqL~~Lk~ 153 (837)
+|||++ .++.+++.+++.+|++|+++.|++
T Consensus 85 ~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 85 IYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred hcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 999999 799999999999999999999875
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.30 E-value=7.5e-12 Score=121.96 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=88.9
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhcc-ccc-cCCCCEEEeecCCCCCCHHHHHHHHHHHhcCC-------------
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHD-HWK-EASAPVVTLHVDDKNVNGEAIAMALAYLYGHR------------- 128 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss-~~k-ES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGe------------- 128 (837)
|+|+. +|+.|.+||.+.+.|.||++||.+ ++. |+....|.|+ +|+..+++.|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~----~V~~~iL~kViey~~~h~~~~~~~~~~~~~~ 78 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLP----NVNAAILKKVIQWCTHHKDDPPPPEDDENKE 78 (159)
T ss_dssp EEEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECT----TSCHHHHHHHHHHHHHTTTCCC---------
T ss_pred EEEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCC----CccHHHHHHHHHHHHHcCcCCCCcccccccc
Confidence 67765 899999999994469999999987 666 6777789888 999999999999999987
Q ss_pred -------------CCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHH
Q 003235 129 -------------PKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVF 174 (837)
Q Consensus 129 -------------L~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~f 174 (837)
+.++.+++.+|+.||++|++..|.++|++++...|...++-++..+
T Consensus 79 ~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~ 137 (159)
T 2ast_A 79 KRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKT 137 (159)
T ss_dssp --CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred cchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 7888999999999999999999999999999988877766554433
No 22
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.7e-12 Score=118.30 Aligned_cols=81 Identities=14% Similarity=0.027 Sum_probs=75.5
Q ss_pred HhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccccccccCCCCHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 003235 160 ISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALY 238 (837)
Q Consensus 160 ~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sEeFleLS~e~L~eLLSSD~L~V~SEeeVFeAVlr 238 (837)
.+.++++||+.++.+|+.|++ .+|.+.|.+||.+|| ++..+++|.+||.+.|..||++| |.+|++||+|+++
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~----~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sd---v~~E~~vf~av~~ 77 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSD----PELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG---VPCSQNPTEAIEA 77 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTC----HHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTC---EETTSCHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 457899999999999999998 999999999999998 89999999999999999999997 8899999999999
Q ss_pred HHHHhCccc
Q 003235 239 AFLAKGAFC 247 (837)
Q Consensus 239 WI~~d~~~l 247 (837)
|+++++..+
T Consensus 78 Wv~~d~~~R 86 (105)
T 2eqx_A 78 WINFNKEER 86 (105)
T ss_dssp HHHTTHHHH
T ss_pred HHHcCHHHH
Confidence 999986433
No 23
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.94 E-value=2.4e-09 Score=96.40 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=64.3
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhcc--ccccCCCCEEEeecCCCCCCHHHHHHHHHHHh-----c---CCCC---
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHD--HWKEASAPVVTLHVDDKNVNGEAIAMALAYLY-----G---HRPK--- 130 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss--~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIY-----T---GeL~--- 130 (837)
|+|+. +|++|.+||.+.+.|+||++||.+ .+.|+....|.|+ +++..+++.+++|+| + +.+.
T Consensus 4 v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~----~V~~~iL~kViey~~~h~~~~~~~~~i~~~~ 79 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR----EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 79 (97)
T ss_dssp EEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECT----TSCHHHHHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECC----CCCHHHHHHHHHHHHHhcccCCCcCCCCcCc
Confidence 55554 789999999993359999999987 6778788899998 999999999999999 5 6776
Q ss_pred CCchhHHHHHHHHHhcCh
Q 003235 131 LNDANAFRVLAAASFLDL 148 (837)
Q Consensus 131 Is~dnVleLL~AAd~LqL 148 (837)
++.+++.+|+.||++|++
T Consensus 80 i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 80 IAPEIALELLMAANFLDC 97 (97)
T ss_dssp CCGGGHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhhhCC
Confidence 899999999999999974
No 24
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.92 E-value=4e-09 Score=101.16 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=85.9
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCC---------------
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHR--------------- 128 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGe--------------- 128 (837)
|+|+. +|+.|.+|+.+...|.+|++||...- ...|.|+ +|+..+++.+++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~----~~~Ipl~----~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~ 75 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG----MDPVPLP----NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKR 75 (141)
T ss_dssp EEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC----CSSEECT----TCCHHHHHHHHHHHHHHTTCC------------
T ss_pred EEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC----CCceecC----CcCHHHHHHHHHHHHHhccCCCccccccccccc
Confidence 66766 88999999999546999999997631 4568887 999999999999999765
Q ss_pred -----------CCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHH
Q 003235 129 -----------PKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQ 172 (837)
Q Consensus 129 -----------L~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il 172 (837)
+.++.+++.+|+.||++|++..|.++|++++...+...+.-++.
T Consensus 76 ~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR 130 (141)
T 1fs1_B 76 TDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIR 130 (141)
T ss_dssp -----HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 67888999999999999999999999999999988777765544
No 25
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.70 E-value=5.6e-09 Score=102.11 Aligned_cols=99 Identities=19% Similarity=0.327 Sum_probs=54.2
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCC---------------
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHR--------------- 128 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGe--------------- 128 (837)
|+|+. +|+.|.+|+.+...|.+|++||.... ....|.|+ +|+..+++.|++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~---~~~~Ipl~----~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~ 78 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAVALESQTIAHMVEDDC---VDNGVPLP----NVTSKILAKVIEYCKRHVEAAASKAEAVEGAAT 78 (160)
T ss_dssp --CCC---------CHHHHTCTTTC---------------CCT----TSCHHHHHHHHHC--------------------
T ss_pred EEEEcCCCCEEEECHHHHHHhHHHHHHHHccC---CCCceeCC----cCcHHHHHHHHHHHHHcccCCCccccccccccc
Confidence 66664 79999999999546999999997643 23467777 999999999999999875
Q ss_pred ------------CCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHH
Q 003235 129 ------------PKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLA 170 (837)
Q Consensus 129 ------------L~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~ 170 (837)
+.++.+++.+|+.||++|++..|.++|++++...|...+.-+
T Consensus 79 ~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ee 132 (160)
T 2p1m_A 79 SDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEE 132 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHH
T ss_pred ccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH
Confidence 457788999999999999999999999999999885444433
No 26
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.25 E-value=5.5e-06 Score=81.90 Aligned_cols=104 Identities=16% Similarity=0.311 Sum_probs=80.4
Q ss_pred cEEEEE-cCeEEEEehhhhccCHHHHHhhccccc----cCCCCEEEeecCCCCCCHHHHHHHHHHHhcCC----------
Q 003235 64 DIIVHV-MGSTYHLHRLILSRSSYFRNMLHDHWK----EASAPVVTLHVDDKNVNGEAIAMALAYLYGHR---------- 128 (837)
Q Consensus 64 DVtLvV-~G~~f~AHRvILAAS~YFraMFss~~k----ES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGe---------- 128 (837)
-|+|+. +|+.|.+++.+...|.+++.|+..... +.....|.|+ +|+..+++.|++|++...
T Consensus 8 ~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~Iplp----nV~s~iL~kVieyc~~h~~~~~~~~~~~ 83 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVP----NVRSSVLQKVIEWAEHHRDSNFPDEDDD 83 (169)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECT----TCCHHHHHHHHHHHHHTTTCCCCC----
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeC----CCCHHHHHHHHHHHHHcccCCCcccccc
Confidence 466655 789999999996679999999975322 1233678887 999999999999997542
Q ss_pred ---------------CCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHH
Q 003235 129 ---------------PKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAY 171 (837)
Q Consensus 129 ---------------L~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~I 171 (837)
+.++...+.+|+.||+||++..|.++|++.+...+.-.+.-+|
T Consensus 84 ~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeei 141 (169)
T 3v7d_A 84 DSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEI 141 (169)
T ss_dssp ----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHH
Confidence 2456678999999999999999999999999876655554333
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.09 E-value=8.3e-06 Score=73.98 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=66.8
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCC--------------C
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHR--------------P 129 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGe--------------L 129 (837)
|+|.. +|+.|.+++.+...|.++++||..++ +.....|.|+ +|+..+++.+++|+|... .
T Consensus 6 v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~-e~~~~~Iplp----~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPF-RESKGRIELK----QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEETTTEEEEEEHHHHTTCHHHHHHHHSST-TTCTTEEEET----TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEecCCCEEEECHHHHHHhHHHHHHHhccc-ccCCCceecC----CcCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 66766 89999999998556999999998765 5556789998 999999999999998532 2
Q ss_pred CCCchhHHHHHHHHHhcCh
Q 003235 130 KLNDANAFRVLAAASFLDL 148 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL 148 (837)
.++.+.+.+|+.||+||++
T Consensus 81 ~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 5778899999999999975
No 28
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.01 E-value=9.3e-06 Score=73.19 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=62.6
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhcc--ccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCC-----------CC
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHD--HWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHR-----------PK 130 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss--~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGe-----------L~ 130 (837)
|+|+. +|+.|.+++.+...|.++++||.. .+.|+....|.|+ +|+..+++.+++|+|... ..
T Consensus 3 v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~----~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~ 78 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR----EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 78 (96)
T ss_dssp EEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECS----SCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC
T ss_pred EEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCC----CCCHHHHHHHHHHHHHccccCCCcccCCCcc
Confidence 56665 899999999985569999999975 2356666788888 999999999999998532 25
Q ss_pred CCchhHHHHHHHHHhcCh
Q 003235 131 LNDANAFRVLAAASFLDL 148 (837)
Q Consensus 131 Is~dnVleLL~AAd~LqL 148 (837)
++.+.+.+|+.||++|++
T Consensus 79 vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 IAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCTTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 788899999999999975
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.01 E-value=4.2e-05 Score=70.04 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=75.9
Q ss_pred cEEEEEcCeEEEEehhhhcc--CHHHHHhhccccc----cCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCch-hH
Q 003235 64 DIIVHVMGSTYHLHRLILSR--SSYFRNMLHDHWK----EASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDA-NA 136 (837)
Q Consensus 64 DVtLvV~G~~f~AHRvILAA--S~YFraMFss~~k----ES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~d-nV 136 (837)
-|+|.|+|+.|...+..|++ -.+|.+||.+... .....++-+ +-++..|+.||+|+.+|++.+..+ ..
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-----DRdp~~F~~IL~~lr~g~l~~p~~~~~ 81 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-----DRDPTYFGPVLNYLRHGKLVINKDLAE 81 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-----CSCHHHHHHHHHHHHHSCCCCCTTSCH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-----cCChHHHHHHHHHhCCCeeCCCCCCCH
Confidence 37789999999999999985 4689999976421 123445655 689999999999999999987554 35
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHh
Q 003235 137 FRVLAAASFLDLQDLCAICTDFIIS 161 (837)
Q Consensus 137 leLL~AAd~LqL~~Lk~lCeefL~s 161 (837)
..++.-|.+|+|+.|++.|.+.|.+
T Consensus 82 ~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 82 EGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7899999999999999999998764
No 30
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.55 E-value=0.00012 Score=68.02 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=62.1
Q ss_pred EEEEE-cCeEEEEehhhhccCHHHHHhhcc--ccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCC-----------CC
Q 003235 65 IIVHV-MGSTYHLHRLILSRSSYFRNMLHD--HWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHR-----------PK 130 (837)
Q Consensus 65 VtLvV-~G~~f~AHRvILAAS~YFraMFss--~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGe-----------L~ 130 (837)
|+|+. +|+.|.+++.+...|..++.||.. .+.|.....|.|+ +|+..+++.|++|++... ..
T Consensus 19 v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~Iplp----nV~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR----EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECS----SCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCC----CCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 66663 899999999976679999999975 2345555688888 999999999999997532 25
Q ss_pred CCchhHHHHHHHHHhcCh
Q 003235 131 LNDANAFRVLAAASFLDL 148 (837)
Q Consensus 131 Is~dnVleLL~AAd~LqL 148 (837)
++.+.+.+|+.||+||++
T Consensus 95 vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 IAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 778899999999999975
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.98 E-value=0.0025 Score=65.01 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=74.3
Q ss_pred EEEEEcCeEEEEehhhhcc--CHHHHHhhccccc----cCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCch-hHH
Q 003235 65 IIVHVMGSTYHLHRLILSR--SSYFRNMLHDHWK----EASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDA-NAF 137 (837)
Q Consensus 65 VtLvV~G~~f~AHRvILAA--S~YFraMFss~~k----ES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~d-nVl 137 (837)
|+|.|+|..|...+..|.+ -.+|.+||.+... .....++-+ +-++..|+.||+|+-+|++.+..+ ...
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-----DRDP~~F~~ILnyLRtG~L~lP~~~~~~ 88 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-----DRDPTYFGPVLNYLRHGKLVINKDLAEE 88 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-----CSCSTTHHHHHHHHHHSCCCCCTTSCHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-----cCChHHHHHHHHHhcCCccCCCCCCCHH
Confidence 6778999999999999985 4688999875421 112345555 578999999999999999987554 357
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHh
Q 003235 138 RVLAAASFLDLQDLCAICTDFIIS 161 (837)
Q Consensus 138 eLL~AAd~LqL~~Lk~lCeefL~s 161 (837)
.++.-|.+|+|+.|++.|.+.|.+
T Consensus 89 ~l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 89 GVLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHH
Confidence 799999999999999999998865
No 32
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.34 E-value=0.011 Score=54.94 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=68.9
Q ss_pred EEEEEcCeEEEEehhhhcc--CHHHHHhhcccc-ccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCch-hHHHHH
Q 003235 65 IIVHVMGSTYHLHRLILSR--SSYFRNMLHDHW-KEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDA-NAFRVL 140 (837)
Q Consensus 65 VtLvV~G~~f~AHRvILAA--S~YFraMFss~~-kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~d-nVleLL 140 (837)
|+|.|+|+.|...+..|.. ...+.+||.... ......++-+ +-++..|+.||+|+-+|++.+..+ .+..++
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-----DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~ 81 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-----DRHPGVFAQIINYYRSGKLHYPTDVCGPLFE 81 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-----CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-----ecChHHHHHHHHHhcCCCCCCCCcccHHHHH
Confidence 7889999999999999984 556777776421 1234456666 578999999999999999977653 478899
Q ss_pred HHHHhcChHHHH--HHHHHHHHh
Q 003235 141 AAASFLDLQDLC--AICTDFIIS 161 (837)
Q Consensus 141 ~AAd~LqL~~Lk--~lCeefL~s 161 (837)
.-|.+|+|+... ..|...+.+
T Consensus 82 ~Ea~fy~i~~~~l~~CC~~~~~~ 104 (115)
T 3kvt_A 82 EELEFWGLDSNQVEPCCWMTYTA 104 (115)
T ss_dssp HHHHHHTCCGGGBCGGGSHHHHS
T ss_pred HHHHHhCCChHHHHHHHHHHHHh
Confidence 999999997743 234444443
No 33
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=94.82 E-value=0.077 Score=50.02 Aligned_cols=90 Identities=11% Similarity=0.143 Sum_probs=64.0
Q ss_pred cEEEEEcCeEEEEehhhhcc--CHHHHHhhccc--cccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCch-hHHH
Q 003235 64 DIIVHVMGSTYHLHRLILSR--SSYFRNMLHDH--WKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDA-NAFR 138 (837)
Q Consensus 64 DVtLvV~G~~f~AHRvILAA--S~YFraMFss~--~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~d-nVle 138 (837)
=|+|.|+|+.|..-+..|.+ -..+.. ... .......++-+ +=++..|+.||+|+-+|++.+..+ .+..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~S~L~~--~~~~~~~~~~~g~~Fi-----DRdp~~F~~ILnflR~G~l~~p~~~~~~~ 86 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFF-----DRDPEVFRCVLNFYRTGKLHYPRYECISA 86 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSSTTS--SGGGGTBCSSSCSEEE-----CSCHHHHHHHHHHHHHSCBCCCTTSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCCceecc--cCCcccccCCCCcEEE-----cCChHHHHHHHHHHhcCCCCCCCCcCHHH
Confidence 37889999999999999974 222222 111 11223455655 579999999999999999987654 4788
Q ss_pred HHHHHHhcChHHHH--HHHHHHHH
Q 003235 139 VLAAASFLDLQDLC--AICTDFII 160 (837)
Q Consensus 139 LL~AAd~LqL~~Lk--~lCeefL~ 160 (837)
++.-|++|+|+.+. ..|.+-+.
T Consensus 87 l~~Ea~fy~i~~l~l~~cC~~~~~ 110 (124)
T 1s1g_A 87 YDDELAFYGILPEIIGDCCYEEYK 110 (124)
T ss_dssp HHHHHHHTTCCGGGBCHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHH
Confidence 99999999998873 34444433
No 34
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=94.72 E-value=0.057 Score=49.12 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=63.2
Q ss_pred EEEEEcCeEEEEehhhhcc--CHHHHHhhcc-ccccCCCCEEEeecCCCCCCHHHHHHHHHHHhc-CCCCCCch-hHHHH
Q 003235 65 IIVHVMGSTYHLHRLILSR--SSYFRNMLHD-HWKEASAPVVTLHVDDKNVNGEAIAMALAYLYG-HRPKLNDA-NAFRV 139 (837)
Q Consensus 65 VtLvV~G~~f~AHRvILAA--S~YFraMFss-~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYT-GeL~Is~d-nVleL 139 (837)
|+|.|+|..|...+..|.+ ...+.+|+.. ........++-+ +-++..|+.||+|+-+ |++.+..+ .+..+
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-----DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~ 77 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-----DRNRPSFDAILYFYQSGGRLRRPVNVPLDVF 77 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-----CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-----cCChHHHHHHHHHHhcCCcccCCCCCCHHHH
Confidence 7889999999999999974 4455556643 112234556666 5789999999999998 89876543 47889
Q ss_pred HHHHHhcChHHHH
Q 003235 140 LAAASFLDLQDLC 152 (837)
Q Consensus 140 L~AAd~LqL~~Lk 152 (837)
+.-|++|+|+.+.
T Consensus 78 ~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 78 SEEIKFYELGENA 90 (100)
T ss_dssp HHHHHHTTCCHHH
T ss_pred HHHHHHcCCCHHH
Confidence 9999999998754
No 35
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=93.98 E-value=0.28 Score=46.34 Aligned_cols=124 Identities=20% Similarity=0.311 Sum_probs=73.4
Q ss_pred CCceeEEEeccccccCCCCcccCcceeecccceEEEEEeecCCCCCccceeeeeEEeecCcCCCCccccceeecCccceE
Q 003235 696 PPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVT 775 (837)
Q Consensus 696 ppfRF~vef~~v~~l~~~~~~~s~~~~yaGs~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R~~v~ 775 (837)
+.-.|.-++.|+.+|+ +.++|++....|-.|.+.+..--........-|+|||+=.+. ..+. --.+.
T Consensus 17 ~~~~~~w~I~nfS~~~--~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~--~~~~---------~w~v~ 83 (155)
T 2foj_A 17 SEATFQFTVERFSRLS--ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE--SDST---------SWSCH 83 (155)
T ss_dssp SEEEEEEEESSGGGCC--SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT--CCCS---------SCEEE
T ss_pred CCcEEEEEECChhhcC--CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC--CCCC---------CCEEE
Confidence 5578889999999995 789999988889999987765422110011569999995322 1111 11244
Q ss_pred EEEE--EEccCCCce-EEeeeccccCCCCCCCCCccchhhhhhhHHH----HhhhcccceEEEEEEee
Q 003235 776 ARYQ--LICPSKREV-MVFGSFKQRGTLLPKAPKGWGWRTALLFDEL----ADILQNGTLRVAAVVQL 836 (837)
Q Consensus 776 a~f~--~~c~s~~~~-~~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~----~~~~~~~~l~~~~v~~~ 836 (837)
|.|+ |.-+..... +.- ..... +.+...+|||..-+-.++| ..-+.+++|.|-|-|..
T Consensus 84 a~~~l~l~~~~~~~~~~~~-~~~~~---F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V 147 (155)
T 2foj_A 84 AQAVLKIINYRDDEKSFSR-RISHL---FFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQA 147 (155)
T ss_dssp EEEEEEECCSSCGGGCEEE-EEEEE---EETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEE
T ss_pred EEEEEEEEcCCCCcceEEe-ccEEE---eCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEE
Confidence 4444 444433221 110 01111 2233579999876666666 34568999988877653
No 36
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=93.87 E-value=0.099 Score=50.31 Aligned_cols=83 Identities=11% Similarity=0.130 Sum_probs=60.9
Q ss_pred cEEEEEcCeEEEEehhhhcc--CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCch-hHHHHH
Q 003235 64 DIIVHVMGSTYHLHRLILSR--SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDA-NAFRVL 140 (837)
Q Consensus 64 DVtLvV~G~~f~AHRvILAA--S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~d-nVleLL 140 (837)
=|+|.|+|+.|...+..|.. -..+...-..........++-+ +=++..|+.||+|+-+|++.+..+ .+..++
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yFi-----DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~ 110 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFF-----DRDPEVFRCVLNFYRTGKLHYPRYECISAYD 110 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEEE-----CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCCCeeecccCCcccccCCCCeEEE-----eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHH
Confidence 48889999999999999974 2222221000111234456666 579999999999999999986554 478899
Q ss_pred HHHHhcChHHH
Q 003235 141 AAASFLDLQDL 151 (837)
Q Consensus 141 ~AAd~LqL~~L 151 (837)
.-|++|+|+.+
T Consensus 111 eEa~fy~i~~l 121 (140)
T 2nz0_B 111 DELAFYGILPE 121 (140)
T ss_dssp HHHHHHTCCGG
T ss_pred HHHHHcCCChH
Confidence 99999999886
No 37
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=93.72 E-value=0.06 Score=49.18 Aligned_cols=82 Identities=11% Similarity=0.148 Sum_probs=59.8
Q ss_pred EEEEEcCeEEEEehhhhcc--CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHhcCCCCCCch-hHHHHHH
Q 003235 65 IIVHVMGSTYHLHRLILSR--SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDA-NAFRVLA 141 (837)
Q Consensus 65 VtLvV~G~~f~AHRvILAA--S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYTGeL~Is~d-nVleLL~ 141 (837)
|+|.|+|+.|...+..|.+ -..+.++-..........++-+ +=++..|+.||+|+-+|++.+..+ .+..++.
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~~Fi-----DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~ 76 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFF-----DRDPDIFRHILNFYRTGKLHYPRHECISAYDE 76 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEE-----CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCccccccCCcccccCCCCcEEE-----eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 7899999999999999974 2222221111111223456666 579999999999999999876554 4788999
Q ss_pred HHHhcChHHH
Q 003235 142 AASFLDLQDL 151 (837)
Q Consensus 142 AAd~LqL~~L 151 (837)
-|++|+|+.+
T Consensus 77 Ea~fy~i~~l 86 (105)
T 1nn7_A 77 ELAFFGLIPE 86 (105)
T ss_dssp HHHHHTCCSC
T ss_pred HHHHcCCCHH
Confidence 9999999886
No 38
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=93.67 E-value=0.33 Score=45.47 Aligned_cols=120 Identities=19% Similarity=0.333 Sum_probs=69.6
Q ss_pred eeEEEeccccccCC--CCcccCcceeeccc----ceEEEEEeecCCCCCccceeeeeEEeecCcCCCCccccceeecCcc
Q 003235 699 RFGIEFEDVHRLSD--GQVKHSPEYFYAGS----LWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSRE 772 (837)
Q Consensus 699 RF~vef~~v~~l~~--~~~~~s~~~~yaGs----~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R~ 772 (837)
.|.-+..|..+|++ ++.++|++ ||+|- .|.+.+----+.... ..-|++||+=.+.. + .
T Consensus 12 ~~~w~I~~fs~~~~~~g~~~~S~~-F~~gg~~g~~W~i~~yP~G~~~~~-~~~lSlyL~l~~~~------------~--w 75 (145)
T 3ivv_A 12 SYMWTINNFSFCREEMGEVIKSST-FSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLVSCP------------K--S 75 (145)
T ss_dssp EEEEEESSGGGCCCCTTCCEECCC-EEESGGGCEEEEEEEETTCSSGGG-TTEEEEEEEEEECS------------S--S
T ss_pred EEEEEEcCchHHhhcCCCEEECCC-cCCCCcCCceEEEEEEcCCCCCCC-CCeEEEEEEEcCCC------------C--C
Confidence 45556677777764 67788876 67776 688776432221111 25699999976531 1 2
Q ss_pred ceEEE--EEEEccCCCceEEeeeccccCCCCCCCCCccchhhhhhhHHH----HhhhcccceEEEEEEeeC
Q 003235 773 KVTAR--YQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDEL----ADILQNGTLRVAAVVQLV 837 (837)
Q Consensus 773 ~v~a~--f~~~c~s~~~~~~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~----~~~~~~~~l~~~~v~~~~ 837 (837)
.|.|. |.|..+.........+ .....|....+|||..-+-.++| ...+.+.+|.|-+-|..+
T Consensus 76 ~v~a~f~l~llnq~~~~~~~~~~---~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~ 143 (145)
T 3ivv_A 76 EVRAKFKFSILNAKGEETKAMES---QRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVV 143 (145)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEC---SSCEEEETTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEEC
T ss_pred cEEEEEEEEEEecCCCceeeecc---cceEEecCCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEE
Confidence 34444 4455554432221111 11111224589999877666777 456789999888877653
No 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=91.15 E-value=0.73 Score=48.18 Aligned_cols=118 Identities=18% Similarity=0.298 Sum_probs=66.5
Q ss_pred eeEEEeccccccCC--CCcccCcceeeccc----ceEEEEEeecCCCCCccceeeeeEEeecCcCCCCccccceeecCcc
Q 003235 699 RFGIEFEDVHRLSD--GQVKHSPEYFYAGS----LWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSRE 772 (837)
Q Consensus 699 RF~vef~~v~~l~~--~~~~~s~~~~yaGs----~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R~ 772 (837)
.|.-+..|...|++ |+.++|++ |+.|- .|.+.+----+.+..+ .-|++||+=.+.+ ..
T Consensus 8 ~~~w~I~nfs~~~~~~~~~i~S~~-F~~gg~~~~~W~i~~yP~G~~~~~~-~~lslyL~~~~~~--------------~~ 71 (312)
T 3hqi_A 8 SYMWTINNFSFCREEMGEVIKSST-FSSGANDKLKWCLRVNPKGLDEESK-DYLSLYLLLVSCP--------------KS 71 (312)
T ss_dssp EEEEEETTGGGCCCCTTCCEECCC-BCC--CCCCEEEEEEETTCCC--CT-TEEEEEEEEEECC--------------C-
T ss_pred EEEEEEcCcchhhhcCCCeEeeCC-cccCCCCCceEEEEEECCCCCccCC-CcEEEEEEEcCCC--------------CC
Confidence 45556677887763 67778875 66665 7888775322211112 4699999876432 11
Q ss_pred ceEEEEEEEccCCCc--eEEeeeccccCCCCCCCCCccchhhhhhhHHHHh----hhcccceEEEEEEe
Q 003235 773 KVTARYQLICPSKRE--VMVFGSFKQRGTLLPKAPKGWGWRTALLFDELAD----ILQNGTLRVAAVVQ 835 (837)
Q Consensus 773 ~v~a~f~~~c~s~~~--~~~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~~~----~~~~~~l~~~~v~~ 835 (837)
.|.|.|++.=-+..+ .....+ .....+..+++|||..-.-.++|-+ .+.+++|.|-+-|.
T Consensus 72 ~v~a~~~~~l~~~~~~~~~~~~~---~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~ 137 (312)
T 3hqi_A 72 EVRAKFKFSILNAKGEETKAMES---QRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVS 137 (312)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEC---SSCEEECTTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEE
T ss_pred cEEEEEEEEEEeCCCCccccccc---CCceeCCCCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEE
Confidence 255555544333333 222111 1122234457999987777777743 57899988877654
No 40
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=84.31 E-value=2.5 Score=47.63 Aligned_cols=123 Identities=21% Similarity=0.356 Sum_probs=72.6
Q ss_pred CCceeEEEeccccccCCCCcccCcceeecccceEEEEEeec-CCCCCccceeeeeEEeecCcCCCCccccceeecCccce
Q 003235 696 PPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFN-DEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKV 774 (837)
Q Consensus 696 ppfRF~vef~~v~~l~~~~~~~s~~~~yaGs~~~~~~q~~~-~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R~~v 774 (837)
+...|.-++.+.++|++ .++|++....|-.|.+.+---- ..+..+ .-|++||+-.... .+. + -.|
T Consensus 29 ~~~~~~w~I~nfS~~~~--~~~S~~F~vgg~~W~i~~yP~G~~~~~~~-~~lSlyL~~~~~~--~~~-------~--w~v 94 (522)
T 2f1z_A 29 SEATFQFTVERFSRLSE--SVLSPPCFVRNLPWKIMVMPRFYPDRPHQ-KSVGFFLQCNAES--DST-------S--WSC 94 (522)
T ss_dssp SEEEEEEEESSCTTCCS--CEECCCEEETTEEEEEEECBC---------CBBCEEEEESTTC--CCS-------S--CBE
T ss_pred CCcEEEEEECChhhcCC--ceeCCCEEECCEeeEEEEEeCCCCCCCCC-CeEEEEEEecCCC--CCC-------C--ceE
Confidence 56788889999999986 8899999989999998774321 111011 4599999865431 111 1 134
Q ss_pred EEEE--EEEccCCCceEEeeeccccCCCCCCCCCccchhhhhhhHHH----HhhhcccceEEEEEEe
Q 003235 775 TARY--QLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDEL----ADILQNGTLRVAAVVQ 835 (837)
Q Consensus 775 ~a~f--~~~c~s~~~~~~f~s~~~~~~~~~~~~~~wgwrs~~l~~e~----~~~~~~~~l~~~~v~~ 835 (837)
.|.| .|..+...+...-.... ..+....++|||..-+-.++| ...+.+++|.|.|-|.
T Consensus 95 ~a~f~l~l~n~~~~~~~~~~~~~---~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~ 158 (522)
T 2f1z_A 95 HAQAVLKIINYRDDEKSFSRRIS---HLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQ 158 (522)
T ss_dssp EEEEEEEECCTTCGGGCEEEECC---EEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEE
T ss_pred EEEEEEEEEcCCCCccceeccce---eEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEee
Confidence 4555 44444432211100111 112233578999876666666 3355888888877664
No 41
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=77.74 E-value=4.7 Score=45.94 Aligned_cols=84 Identities=10% Similarity=0.126 Sum_probs=62.0
Q ss_pred cEEEEEcCeEEEEehhhhcc--CHHHHHhhcc-ccccCCCCEEEeecCCCCCCHHHHHHHHHHHhc-CCCCCCch-hHHH
Q 003235 64 DIIVHVMGSTYHLHRLILSR--SSYFRNMLHD-HWKEASAPVVTLHVDDKNVNGEAIAMALAYLYG-HRPKLNDA-NAFR 138 (837)
Q Consensus 64 DVtLvV~G~~f~AHRvILAA--S~YFraMFss-~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIYT-GeL~Is~d-nVle 138 (837)
=|+|.|+|+.|...+..|.+ -..+..++.. ........++-+ +=++..|+.+|+|+.+ |++.+..+ .+..
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-----DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~ 127 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-----DRNRPSFDAILYYYQSGGRLRRPVNVPLDI 127 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-----CSCHHHHHHHHHHHHHTSCCCCCTTSCHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-----cCChHHHHHHHHHHhcCCccccCCcccHHH
Confidence 37778999999999999974 3333344432 222234456666 6799999999999999 99976554 4667
Q ss_pred HHHHHHhcChHHHH
Q 003235 139 VLAAASFLDLQDLC 152 (837)
Q Consensus 139 LL~AAd~LqL~~Lk 152 (837)
+++-|++|+++++.
T Consensus 128 ~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 128 FSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHTTCCHHH
T ss_pred HHHHHHhcCCCHHH
Confidence 88999999998754
No 42
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.72 E-value=4.8 Score=35.98 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=32.5
Q ss_pred CCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhcc
Q 003235 128 RPKLNDANAFRVLAAASFLDLQDLCAICTDFIISEL 163 (837)
Q Consensus 128 eL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~L 163 (837)
.-.++++|...++.+|+.|+++.|.+.|.+|+.+++
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF 40 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL 40 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999998754
No 43
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=71.58 E-value=7.5 Score=38.13 Aligned_cols=128 Identities=17% Similarity=0.183 Sum_probs=67.3
Q ss_pred eeEEEeccccccCC----CC--cccCcceee--cccceEEEEEeecCCCCCccceeeeeEEeecCcCCC-Cccccceeec
Q 003235 699 RFGIEFEDVHRLSD----GQ--VKHSPEYFY--AGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITD-SYRKVHMYVD 769 (837)
Q Consensus 699 RF~vef~~v~~l~~----~~--~~~s~~~~y--aGs~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~-~~~~v~~y~D 769 (837)
.|--++.|...+++ |+ .++|++..- .|-.|.+.+----+....+ .-|++|||=.+.+... ..-+
T Consensus 44 ~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~-~~lSlyL~l~~~~~~~~~~W~------ 116 (192)
T 1ca9_A 44 VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRG-THLSLFFVVMKGPNDALLRWP------ 116 (192)
T ss_dssp EEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTT-TEEEEEEEEECCTTGGGSCSS------
T ss_pred eEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCC-CEEEEEEEEccCCCCCcCCCc------
Confidence 45556667776653 33 578875444 4888887654322111112 4699999976543211 1000
Q ss_pred CccceEEEEEEEccCCCceE--Eeeecc--ccCCCCC--CCCCccchhhhhhhHHHH---hhhcccceEEEEEEee
Q 003235 770 SREKVTARYQLICPSKREVM--VFGSFK--QRGTLLP--KAPKGWGWRTALLFDELA---DILQNGTLRVAAVVQL 836 (837)
Q Consensus 770 ~R~~v~a~f~~~c~s~~~~~--~f~s~~--~~~~~~~--~~~~~wgwrs~~l~~e~~---~~~~~~~l~~~~v~~~ 836 (837)
-.+...|.|.-+.....+ .+...+ ..|. -| ..+.+|||..-.-.++|. .-+.+++|.|-+-|..
T Consensus 117 --~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~-rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V 189 (192)
T 1ca9_A 117 --FNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQ-RPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDL 189 (192)
T ss_dssp --CCCCEEEEECCTTSSCCEEEEECCCTTSGGGS-CCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECC
T ss_pred --eEEEEEEEEECCCCCceeeEeeccCCchhhhc-CCccCCCCCcChhheeEHHHhhhccCCEeCCEEEEEEEEEe
Confidence 123344455544433222 121100 0110 01 135699999877777776 2568899888777653
No 44
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=71.05 E-value=18 Score=35.00 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=67.3
Q ss_pred eEEEeccccccC------CCCcccCcceeec--ccceEEEEEeecCCCCCccceeeeeEEeecCcCCCCccccceeecCc
Q 003235 700 FGIEFEDVHRLS------DGQVKHSPEYFYA--GSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSR 771 (837)
Q Consensus 700 F~vef~~v~~l~------~~~~~~s~~~~ya--Gs~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~~~~~v~~y~D~R 771 (837)
|--+..|..+++ ++..++|++.+=. |-.|.+.+----+....+ .-|++|||=.+.+...+. +-.
T Consensus 26 ~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~-~~lSlyL~l~~~~~d~~l-------~W~ 97 (178)
T 4gjh_A 26 LIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKG-THLSLYFVVMRGEFDSLL-------QWP 97 (178)
T ss_dssp EEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTT-TEEEEEEEEBCCTTGGGS-------CSS
T ss_pred EEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCC-CEEEEEEEEecCCCCccc-------CCc
Confidence 344445555554 2347888764444 456876553222111112 579999998654321100 000
Q ss_pred cceEEEEEEEccCCCce-E--EeeeccccCCCCC-----CCCCccchhhhhhhHHHHh----hhcccceEEEEEEee
Q 003235 772 EKVTARYQLICPSKREV-M--VFGSFKQRGTLLP-----KAPKGWGWRTALLFDELAD----ILQNGTLRVAAVVQL 836 (837)
Q Consensus 772 ~~v~a~f~~~c~s~~~~-~--~f~s~~~~~~~~~-----~~~~~wgwrs~~l~~e~~~----~~~~~~l~~~~v~~~ 836 (837)
-.+...|.|.-+..... + .|.+.+. ...+ ....+|||..-.-.++|-+ -+.+.+|.|-+-|.+
T Consensus 98 v~a~~~l~Lldq~~~~~~~~~~~~~~~~--~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 98 FRQRVTLMLLDQSGKKNHIVETFKADPN--SSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp CCCEEEEEECCTTSSCCCEEEEEECCTT--CGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred eEEEEEEEEEcCCCCcceeEEeeccCCc--cccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence 11344455555543221 2 2222111 1122 2356899998888888875 669999998887754
No 45
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=70.76 E-value=15 Score=36.55 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=67.3
Q ss_pred eEEEeccccccCC------CCcccCcceeec--ccceEEEEEeecCCCCCc-cceeeeeEEeecCcCCCC-ccccceeec
Q 003235 700 FGIEFEDVHRLSD------GQVKHSPEYFYA--GSLWKVSVQAFNDEDPQG-RRTLGLFLHRRKAEITDS-YRKVHMYVD 769 (837)
Q Consensus 700 F~vef~~v~~l~~------~~~~~s~~~~ya--Gs~~~~~~q~~~~~~~~~-~~~lg~~lhr~~~~~~~~-~~~v~~y~D 769 (837)
|--+..|..+++. |..++|++++=. |-.|.+.+ .-+.+..+ ..-|++||+-.+.+..+. ..+|
T Consensus 42 ~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~--yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~----- 114 (198)
T 4ghu_A 42 LIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARV--YLNGDGMGKGTHLSLFFVIMRGEYDALLPWPF----- 114 (198)
T ss_dssp EEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEE--ETTCCGGGTTTEEEEEEEEECCTTGGGSCSSC-----
T ss_pred EEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEE--EeCCCCCCCCCeEEEEEEecCCccCCCCCceE-----
Confidence 4445556565543 578888774444 45577544 22221111 146999999765432111 1111
Q ss_pred CccceEEEEEEEccCCCce---EEeeeccc--cCCC-CCCCCCccchhhhhhhHHHHh--hhcccceEEEEEEee
Q 003235 770 SREKVTARYQLICPSKREV---MVFGSFKQ--RGTL-LPKAPKGWGWRTALLFDELAD--ILQNGTLRVAAVVQL 836 (837)
Q Consensus 770 ~R~~v~a~f~~~c~s~~~~---~~f~s~~~--~~~~-~~~~~~~wgwrs~~l~~e~~~--~~~~~~l~~~~v~~~ 836 (837)
.++..|.|.-+..... ..|.+.|. .+.. +-....+|||..-+-.++|.+ -+.+.+|.|-+.|..
T Consensus 115 ---~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v 186 (198)
T 4ghu_A 115 ---KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 186 (198)
T ss_dssp ---CCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECC
T ss_pred ---EEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhhcCCeeCCEEEEEEEEEe
Confidence 2444556666553221 12222111 1110 112356999998888888765 458999988877754
No 46
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=67.71 E-value=5.1 Score=38.12 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=65.4
Q ss_pred eEEEeccccccCC----CCc--ccCccee--ecccceEEEEEeecCCCCCccceeeeeEEeecCcCCC-CccccceeecC
Q 003235 700 FGIEFEDVHRLSD----GQV--KHSPEYF--YAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITD-SYRKVHMYVDS 770 (837)
Q Consensus 700 F~vef~~v~~l~~----~~~--~~s~~~~--yaGs~~~~~~q~~~~~~~~~~~~lg~~lhr~~~~~~~-~~~~v~~y~D~ 770 (837)
|--++.|..++++ |+. ++|++.+ -.|-.|.+.+---.+....+ .-|++|||=.+.+... ..-+
T Consensus 21 ~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~-~~lSlyL~l~~~~~~~~~~w~------- 92 (168)
T 1d00_A 21 FIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRG-THLSLFFVVMKGPNDALLRWP------- 92 (168)
T ss_dssp EEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTT-TEEEEEEEEECCTTGGGSCSS-------
T ss_pred EEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCC-cEEEEEEEEecCCCCccCCCc-------
Confidence 4455566666643 343 7787654 24888987765332211112 5699999976533211 1000
Q ss_pred ccceEEEEEEEccCCCceEEeeeccccCC-CCC----CCCCccchhhhhhhHHHHh---hhcccceEEEEEEe
Q 003235 771 REKVTARYQLICPSKREVMVFGSFKQRGT-LLP----KAPKGWGWRTALLFDELAD---ILQNGTLRVAAVVQ 835 (837)
Q Consensus 771 R~~v~a~f~~~c~s~~~~~~f~s~~~~~~-~~~----~~~~~wgwrs~~l~~e~~~---~~~~~~l~~~~v~~ 835 (837)
-.+...|.|.-+..+..+.-...++... .+. ..+.+|||..-.-.++|.+ -+.+++|.|-+-|.
T Consensus 93 -~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~ 164 (168)
T 1d00_A 93 -FNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVD 164 (168)
T ss_dssp -CCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEEC
T ss_pred -eEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhcccCCceeCCEEEEEEEEE
Confidence 1233345555444433221110011000 111 2357899987666666654 56889888877664
No 47
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=65.44 E-value=33 Score=35.05 Aligned_cols=99 Identities=13% Similarity=0.187 Sum_probs=68.4
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccC----ccc-----HHHHHHHHhhcccCCch-HHHHHHHHHHHHhcc
Q 003235 130 KLNDANAFRVLAAASFLDLQDLCAICTDFIISELW----TSN-----LLAYQVFAENQDYGIHG-ERVRNACWGYLCQSG 199 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls----~eN-----~L~Il~fAe~y~lgl~s-eeLk~aCl~FI~kNF 199 (837)
.++.+|+..++..|+.++++.|.+.|.+||..++. .+. .-.+..+-..-.+.+.+ ..+.+++..|+..+.
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~ 217 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNA 217 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTH
T ss_pred cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCH
Confidence 47788999999999999999999999999987532 111 11222222222222222 578888899987651
Q ss_pred --------ccccccccCCCCHHHHHHhccCCCCCCCC
Q 003235 200 --------AVELKEVLPKLSPQTLHALLTSDELWVPS 228 (837)
Q Consensus 200 --------eV~~sEeFleLS~e~L~eLLSSD~L~V~S 228 (837)
.++..=.|.-|+.+.|..++..+.+-..+
T Consensus 218 ~~r~~~~~~ll~~VRf~l~~~~~L~~~v~~~~l~~~~ 254 (279)
T 3i3n_A 218 EERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANN 254 (279)
T ss_dssp HHHTTTHHHHHTTSCGGGSCHHHHHHTTTTSHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHhhccchhcCC
Confidence 35556678889999999988877664443
No 48
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=59.16 E-value=17 Score=31.55 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=30.1
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhc
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQS 198 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kN 198 (837)
.++.+|+..++..|..+++ +.|++.|.+||.++
T Consensus 76 ~~~~~~~~~ll~~A~~~~~----~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 76 DLEADTVLATLYAAKKYIV----PALAKACVNFLETS 108 (109)
T ss_dssp CCCTTTHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc----HHHHHHHHHHHHhh
Confidence 4678899999999999998 99999999999875
No 49
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=54.42 E-value=12 Score=35.09 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=31.3
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhcc
Q 003235 130 KLNDANAFRVLAAASFLDLQDLCAICTDFIISEL 163 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~L 163 (837)
.++.+|+..++.+|+.++++.|++.|.+||.+++
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~ 164 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAVDFINYHA 164 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999865
No 50
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=49.39 E-value=29 Score=31.13 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=29.9
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhc
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQS 198 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kN 198 (837)
.++.+|+..++..|..+.+ +.|++.|.+||.++
T Consensus 94 ~~~~~~~~~ll~~A~~~~i----~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 94 NLREGNIMAVMATAMYLQM----EHVVDTCRKFIKAS 126 (127)
T ss_dssp CCCTTTHHHHHHHHHHTTC----HHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHhCC----HHHHHHHHHHHHhc
Confidence 4678899999999999998 99999999999875
No 51
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=44.99 E-value=68 Score=31.45 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=67.1
Q ss_pred CceeEEEeccccccCC----CC--cccCcceeeccc-ceEEEEEeecCCCCC-ccceeeeeEEeecCcCCCC-cccccee
Q 003235 697 PFRFGIEFEDVHRLSD----GQ--VKHSPEYFYAGS-LWKVSVQAFNDEDPQ-GRRTLGLFLHRRKAEITDS-YRKVHMY 767 (837)
Q Consensus 697 pfRF~vef~~v~~l~~----~~--~~~s~~~~yaGs-~~~~~~q~~~~~~~~-~~~~lg~~lhr~~~~~~~~-~~~v~~y 767 (837)
.-.|.-+..|..++++ |. .++|++ ||.|- =|+.+|...-+.+.. ...-|++|||=.+.+.... .-+
T Consensus 39 ~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~-F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp---- 113 (192)
T 2gkw_A 39 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQP-FYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWP---- 113 (192)
T ss_dssp SSEEEEEEECHHHHHHHHHHTSCSCEECCC-EESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSS----
T ss_pred CcEEEEEECCHHHHHHHhhcCCCceEEccc-EEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCc----
Confidence 3456666777776653 44 478875 77764 244444443322211 1146999998764432110 000
Q ss_pred ecCccceEEEEEEEccCCCce-E--EeeeccccCCCCCC-----CCCccchhhhhhhHHHHh--hhcccceEEEEEEe
Q 003235 768 VDSREKVTARYQLICPSKREV-M--VFGSFKQRGTLLPK-----APKGWGWRTALLFDELAD--ILQNGTLRVAAVVQ 835 (837)
Q Consensus 768 ~D~R~~v~a~f~~~c~s~~~~-~--~f~s~~~~~~~~~~-----~~~~wgwrs~~l~~e~~~--~~~~~~l~~~~v~~ 835 (837)
-.++..|.|.-+..... + .|...+. ...|. .+.+|||..-.-.++|-+ -+++.+|.|-+-|.
T Consensus 114 ----~~a~~~l~lldq~~~~~~~~~~~~~~~~--~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~ 185 (192)
T 2gkw_A 114 ----FKQKVTLMLMDQGSSRRHLGDAFKPDPN--SSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 185 (192)
T ss_dssp ----CCCCEEEEECCCSTTCCCEEEEECCCTT--CTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEEC
T ss_pred ----EEEEEEEEEECCCCCccceEEEEecCCC--cccccCCCCCCcCCCChHHEeEHHHhCcCCCeeCCEEEEEEEEE
Confidence 11334455554443321 1 2222111 11122 247899998777777754 45899988777664
No 52
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=41.67 E-value=40 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=28.2
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHh
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQ 197 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~k 197 (837)
.++.+|+..++..|..+++ +.|++.|.+||.+
T Consensus 85 ~~~~~~v~~ll~~A~~~~i----~~L~~~C~~~l~~ 116 (116)
T 2vpk_A 85 NLDSWNVKEIHQAADYLKV----EEVVTKCKIKMED 116 (116)
T ss_dssp CCCTTTHHHHHHHHHHTTC----HHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHHHhCC----HHHHHHHHHHHhC
Confidence 4678899999999999998 9999999999853
No 53
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=40.97 E-value=23 Score=32.46 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=28.9
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG 199 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF 199 (837)
.++.+|+..++..|..+.+ +.|++.|.+||.++.
T Consensus 86 ~i~~~~v~~ll~~A~~l~i----~~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 86 ALTSGNRDQVLLAAKELRV----PEAVELCQSFQPQTS 119 (135)
T ss_dssp CCCTTTHHHHHHHHHHTTC----HHHHHHHHHCCC---
T ss_pred CCCHHHHHHHHHHHHHhCc----HHHHHHHHHHHHHhc
Confidence 4678999999999999998 999999999998874
No 54
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=38.14 E-value=89 Score=29.28 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=22.6
Q ss_pred CCccchhhhhhhHHHH--hhhcccceEEEEEEeeC
Q 003235 805 PKGWGWRTALLFDELA--DILQNGTLRVAAVVQLV 837 (837)
Q Consensus 805 ~~~wgwrs~~l~~e~~--~~~~~~~l~~~~v~~~~ 837 (837)
.++|||..-.-.++|. ..+++.+|.|-+-|..|
T Consensus 122 ~~~~G~~~Fi~~~~L~~~~yl~dD~l~I~~~V~v~ 156 (160)
T 1lb6_A 122 PKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTR 156 (160)
T ss_dssp SEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEEC-
T ss_pred CCCcCEeeEeEHHHhhhCCCccCCEEEEEEEEEEe
Confidence 4589998765556554 34588998887776543
No 55
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=37.77 E-value=52 Score=29.26 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=32.1
Q ss_pred HHHHHHHHh---ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHH
Q 003235 153 AICTDFIIS---ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLC 196 (837)
Q Consensus 153 ~lCeefL~s---~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~ 196 (837)
+...+||=. .++.+|+..++..|..+.+ +.|++.|.+||.
T Consensus 75 ~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i----~~L~~~C~~~l~ 117 (119)
T 2q81_A 75 GQVLEFMYTAKLSLSPENVDDVLAVATFLQM----QDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHSCCCCCTTTHHHHHHHHHHTTC----HHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHhCC----HHHHHHHHHHHh
Confidence 334444443 4678899999999999998 999999999985
No 56
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=37.63 E-value=32 Score=30.70 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=27.6
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhc
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQS 198 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kN 198 (837)
.++.+|+..++..|..+++ +.|++.|.+||.++
T Consensus 85 ~~~~~~v~~ll~~A~~~~i----~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 85 ALTSGNRDQVLLAARELRV----PEAVELCQSFKPKT 117 (119)
T ss_dssp CCCTTTHHHHHHHHHHTTC----HHHHHHHHHCC---
T ss_pred ccCHHHHHHHHHHHHHhCc----HHHHHHHHHHHHHc
Confidence 4678899999999999998 99999999998765
No 57
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=36.62 E-value=60 Score=28.90 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=29.0
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHh
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQ 197 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~k 197 (837)
.++.+|+..++..|+.+.+ +.|++.|.+||.+
T Consensus 88 ~~~~~~~~~ll~~A~~~~i----~~L~~~c~~~l~~ 119 (121)
T 1buo_A 88 QAKAEDLDDLLYAAEILEI----EYLEEQCLKMLET 119 (121)
T ss_dssp CCCGGGHHHHHHHHHHHTC----HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC----HHHHHHHHHHHHH
Confidence 4677899999999999998 9999999999876
No 58
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=32.66 E-value=38 Score=31.00 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=30.8
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG 199 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF 199 (837)
.++.+|+..++..|..+++ +.|++.|.+||.++.
T Consensus 100 ~i~~~~v~~ll~~A~~~~i----~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 100 ILSKDNVDEVCRCVEFLSV----HNIEESCFQFLKFKF 133 (138)
T ss_dssp CCCTTTHHHHHHHHHHHTC----GGGHHHHHHHTTCCC
T ss_pred ccCHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHhc
Confidence 4778999999999999998 999999999998873
No 59
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=31.96 E-value=92 Score=31.43 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=67.1
Q ss_pred CCceeEEEeccccccCC----C--CcccCcceeeccc-ceEEEEEeecCCCCC-ccceeeeeEEeecCcCCCC-ccccce
Q 003235 696 PPFRFGIEFEDVHRLSD----G--QVKHSPEYFYAGS-LWKVSVQAFNDEDPQ-GRRTLGLFLHRRKAEITDS-YRKVHM 766 (837)
Q Consensus 696 ppfRF~vef~~v~~l~~----~--~~~~s~~~~yaGs-~~~~~~q~~~~~~~~-~~~~lg~~lhr~~~~~~~~-~~~v~~ 766 (837)
....|.-+..|..+++. | ..++|++ ||.|. =|+.+|...-+.+.. ...-|++|||=.+.+.... .-+
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~-F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp--- 149 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQP-FYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWP--- 149 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCC-EESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSS---
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECce-EEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCc---
Confidence 34566667777777653 3 3677875 78763 134444444322211 1146999998654332111 000
Q ss_pred eecCccceEEEEEEEccCCCce-E--Eeeeccc--cCCC-CCCCCCccchhhhhhhHHHH--hhhcccceEEEEEEe
Q 003235 767 YVDSREKVTARYQLICPSKREV-M--VFGSFKQ--RGTL-LPKAPKGWGWRTALLFDELA--DILQNGTLRVAAVVQ 835 (837)
Q Consensus 767 y~D~R~~v~a~f~~~c~s~~~~-~--~f~s~~~--~~~~-~~~~~~~wgwrs~~l~~e~~--~~~~~~~l~~~~v~~ 835 (837)
-.++..|.|.-+..... + .|...+. .|.- .-..+++|||..-.-.++|- .-+.+.+|.|-+-|.
T Consensus 150 -----~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~ 221 (228)
T 1flk_A 150 -----FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 221 (228)
T ss_dssp -----CCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECC
T ss_pred -----EEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHccCCCccCCEEEEEEEEE
Confidence 11344555555443321 1 1221111 1100 00235799999877777774 356889988777654
No 60
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=31.35 E-value=81 Score=27.75 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=27.3
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHH
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYL 195 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI 195 (837)
.++.+|+..++..|..+++ +.|++.|.+||
T Consensus 90 ~~~~~~~~~ll~~A~~~~i----~~L~~~C~~~L 119 (120)
T 2if5_A 90 TVSTANVGDILSAARLLEI----PAVSHVCADLL 119 (120)
T ss_dssp CCCGGGHHHHHHHHHHTTC----HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCC----HHHHHHHHHHh
Confidence 3677899999999999998 99999999987
No 61
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=29.83 E-value=1.1e+02 Score=29.19 Aligned_cols=87 Identities=13% Similarity=0.157 Sum_probs=58.8
Q ss_pred CCchhHHHHHHHHHhcCh---------------HHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHH
Q 003235 131 LNDANAFRVLAAASFLDL---------------QDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYL 195 (837)
Q Consensus 131 Is~dnVleLL~AAd~LqL---------------~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI 195 (837)
++...+..|+..+.+-.- ..+.+...+|+ .++.++++.++..|...+. ..|.+.|.+|+
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id~~~l~eLl~AAnyL~I----~~Lld~~c~~v 122 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAANYLDI----KGLLDVTCKTV 122 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSCHHHHHHHHHHHHHHTC----HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCCHHHHHHHHHHHHHHhH----HHHHHHHHHHH
Confidence 445556777777766541 12333445566 4888999999999999888 99999999999
Q ss_pred HhccccccccccCCCCHHHHHHhccCCCCCCCCHHH
Q 003235 196 CQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQ 231 (837)
Q Consensus 196 ~kNFeV~~sEeFleLS~e~L~eLLSSD~L~V~SEee 231 (837)
+.. +..-+.+.+.+++.-.+=.-+.|++
T Consensus 123 a~~--------i~gkt~eeir~~f~I~~d~t~eEe~ 150 (159)
T 2ast_A 123 ANM--------IKGKTPEEIRKTFNIKNDFTEEEEA 150 (159)
T ss_dssp HHH--------HSSCCHHHHHHHTTCCCCSCTTHHH
T ss_pred HHH--------HcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 875 3334677777777643322244443
No 62
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=24.17 E-value=48 Score=33.32 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=30.4
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHHHHHHHHhcc
Q 003235 130 KLNDANAFRVLAAASFLDLQDLCAICTDFIISEL 163 (837)
Q Consensus 130 ~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~L 163 (837)
.++.+|+..++..|+.++++.|.+.|.+||.+++
T Consensus 130 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f 163 (256)
T 3hve_A 130 CIAAENCIGIRDFALHYCLHHVHYLATEYLETHF 163 (256)
T ss_dssp TCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999997643
No 63
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=22.21 E-value=67 Score=29.78 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=27.0
Q ss_pred ccCcccHHHHHHHHhhcccCCchHHHHHHHHHHH
Q 003235 162 ELWTSNLLAYQVFAENQDYGIHGERVRNACWGYL 195 (837)
Q Consensus 162 ~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI 195 (837)
.++.+|+..++..|..+.+ +.|++.|.+||
T Consensus 114 ~i~~~~v~~ll~~A~~l~i----~~L~~~C~~~L 143 (144)
T 2ppi_A 114 RLNEDTIQDVVQAADLLLL----TDLKTLCCEFL 143 (144)
T ss_dssp CCCTTTHHHHHHHHHHTTC----HHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCc----HHHHHHHHHHh
Confidence 4678899999999999998 99999999876
No 64
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=21.94 E-value=56 Score=31.22 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=28.4
Q ss_pred HHHHHHHHhHHhCCcchhhhhhhHHHHHHHHHHHHHhh
Q 003235 450 ALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVA 487 (837)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~lw~~~~l~~~v~~i~a 487 (837)
+.-++++-+++|||-+..-+|-=..||. +-+++++.
T Consensus 42 D~~~L~~~f~~LgF~V~~~~dlt~~em~--~~l~~~~~ 77 (146)
T 2dko_A 42 DAANLRETFRNLKYEVRNKNDLTREEIV--ELMRDVSK 77 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCHHHHH--HHHHHHHH
Confidence 6778999999999999999987666664 55666655
Done!